Query 046751
Match_columns 155
No_of_seqs 141 out of 1171
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 04:10:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046751.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046751hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0613 Predicted metal-depend 99.6 6.5E-15 1.4E-19 121.7 9.2 122 4-128 110-251 (258)
2 PRK09248 putative hydrolase; V 98.8 1.4E-08 2.9E-13 82.7 6.8 79 60-144 114-211 (246)
3 TIGR00375 conserved hypothetic 98.3 1.1E-06 2.3E-11 76.6 6.3 81 59-139 114-206 (374)
4 PF13263 PHP_C: PHP-associated 97.5 1.3E-05 2.8E-10 51.7 -1.0 29 111-139 12-40 (56)
5 PRK08392 hypothetical protein; 97.1 0.0015 3.1E-08 52.3 6.5 83 63-152 108-207 (215)
6 PRK07328 histidinol-phosphatas 97.0 0.001 2.2E-08 54.8 5.1 70 63-134 145-241 (269)
7 TIGR01856 hisJ_fam histidinol 96.8 0.0015 3.2E-08 53.5 4.2 71 63-134 146-249 (253)
8 PRK08123 histidinol-phosphatas 96.6 0.0038 8.2E-08 51.6 5.1 71 63-134 157-262 (270)
9 PRK05588 histidinol-phosphatas 96.2 0.0077 1.7E-07 49.2 4.5 70 63-133 128-229 (255)
10 PRK07945 hypothetical protein; 96.1 0.016 3.4E-07 49.8 6.3 67 63-131 212-301 (335)
11 PRK06361 hypothetical protein; 96.1 0.0094 2E-07 47.1 4.6 62 65-130 106-177 (212)
12 PRK06740 histidinol-phosphatas 96.0 0.011 2.3E-07 50.7 4.9 69 63-133 206-303 (331)
13 PRK08609 hypothetical protein; 95.5 0.036 7.8E-07 50.8 6.4 71 68-143 454-543 (570)
14 PRK07329 hypothetical protein; 95.4 0.015 3.3E-07 47.4 3.4 71 62-133 128-228 (246)
15 PRK00912 ribonuclease P protei 94.9 0.063 1.4E-06 43.4 5.5 69 61-130 91-183 (237)
16 COG1379 PHP family phosphoeste 93.6 0.045 9.8E-07 47.5 2.2 79 59-137 119-210 (403)
17 COG1387 HIS2 Histidinol phosph 89.6 1.2 2.6E-05 36.3 6.3 73 61-134 113-206 (237)
18 COG4464 CapC Capsular polysacc 88.2 0.81 1.7E-05 37.8 4.3 69 60-130 117-202 (254)
19 COG0613 Predicted metal-depend 84.2 0.31 6.6E-06 40.4 -0.1 76 59-136 98-188 (258)
20 PRK00448 polC DNA polymerase I 80.1 1.5 3.2E-05 44.7 2.9 64 55-118 480-561 (1437)
21 PF07722 Peptidase_C26: Peptid 79.1 4.9 0.00011 32.2 5.3 45 62-124 27-72 (217)
22 PF02811 PHP: PHP domain; Int 75.6 10 0.00022 27.9 5.8 48 63-110 109-169 (175)
23 COG2071 Predicted glutamine am 71.8 9 0.00019 31.9 5.0 46 61-124 28-73 (243)
24 cd02930 DCR_FMN 2,4-dienoyl-Co 66.8 20 0.00043 30.7 6.3 24 59-82 77-102 (353)
25 PF10566 Glyco_hydro_97: Glyco 66.7 9 0.0002 32.3 4.1 66 59-128 73-160 (273)
26 COG0826 Collagenase and relate 66.0 11 0.00024 32.8 4.6 49 59-107 49-102 (347)
27 COG1902 NemA NADH:flavin oxido 61.1 24 0.00052 30.8 5.8 23 59-81 83-107 (363)
28 cd04733 OYE_like_2_FMN Old yel 55.9 41 0.00089 28.6 6.3 19 59-77 82-100 (338)
29 PRK09997 hydroxypyruvate isome 54.7 22 0.00048 28.6 4.3 34 86-119 17-58 (258)
30 cd08580 GDPD_Rv2277c_like Glyc 54.5 16 0.00034 30.3 3.5 44 60-106 217-260 (263)
31 cd03309 CmuC_like CmuC_like. P 53.0 28 0.00061 29.7 4.9 62 59-122 198-265 (321)
32 TIGR03234 OH-pyruv-isom hydrox 52.4 21 0.00045 28.5 3.8 35 86-120 16-58 (254)
33 PRK13523 NADPH dehydrogenase N 51.4 50 0.0011 28.3 6.2 24 59-82 81-106 (337)
34 cd08582 GDPD_like_2 Glyceropho 51.2 35 0.00076 27.0 4.9 42 62-107 191-232 (233)
35 cd04734 OYE_like_3_FMN Old yel 50.8 50 0.0011 28.3 6.1 24 59-82 77-102 (343)
36 COG0735 Fur Fe2+/Zn2+ uptake r 49.6 89 0.0019 23.4 6.7 63 19-81 13-78 (145)
37 TIGR02336 1,3-beta-galactosyl- 48.7 14 0.00031 35.1 2.6 65 34-101 258-332 (719)
38 cd08562 GDPD_EcUgpQ_like Glyce 48.4 41 0.00089 26.2 4.9 40 63-106 190-229 (229)
39 cd08579 GDPD_memb_like Glycero 46.9 43 0.00092 26.2 4.7 42 61-106 179-220 (220)
40 cd08556 GDPD Glycerophosphodie 46.3 45 0.00098 24.8 4.6 38 62-103 150-187 (189)
41 PRK08569 rpl18p 50S ribosomal 45.5 36 0.00078 27.4 4.1 57 4-65 122-178 (193)
42 cd08563 GDPD_TtGDE_like Glycer 45.5 46 0.00099 26.3 4.8 41 62-106 190-230 (230)
43 PRK09989 hypothetical protein; 45.5 29 0.00064 27.8 3.7 19 87-105 18-36 (258)
44 PF01726 LexA_DNA_bind: LexA D 45.1 11 0.00025 24.7 1.0 39 4-42 18-56 (65)
45 PF13653 GDPD_2: Glycerophosph 45.0 24 0.00052 19.9 2.2 17 87-103 10-26 (30)
46 PRK11366 puuD gamma-glutamyl-g 44.9 62 0.0013 26.5 5.6 35 64-101 31-65 (254)
47 cd08567 GDPD_SpGDE_like Glycer 44.8 57 0.0012 26.0 5.3 42 62-107 221-262 (263)
48 KOG1036 Mitotic spindle checkp 43.8 11 0.00024 32.5 0.9 26 98-123 226-254 (323)
49 COG0159 TrpA Tryptophan syntha 43.3 49 0.0011 27.9 4.7 57 45-103 64-128 (265)
50 TIGR00262 trpA tryptophan synt 41.0 57 0.0012 26.9 4.8 53 45-101 57-119 (256)
51 cd08555 PI-PLCc_GDPD_SF Cataly 39.8 57 0.0012 24.8 4.3 39 61-102 138-176 (179)
52 cd08564 GDPD_GsGDE_like Glycer 39.6 83 0.0018 25.5 5.5 45 61-106 212-257 (265)
53 PRK08508 biotin synthase; Prov 39.2 76 0.0016 26.3 5.3 38 62-101 78-116 (279)
54 PF02679 ComA: (2R)-phospho-3- 38.8 49 0.0011 27.5 4.0 46 61-109 56-109 (244)
55 cd04747 OYE_like_5_FMN Old yel 38.3 88 0.0019 27.2 5.7 24 59-82 78-103 (361)
56 TIGR03849 arch_ComA phosphosul 38.1 81 0.0018 26.1 5.2 49 61-109 43-96 (237)
57 PRK13111 trpA tryptophan synth 37.5 95 0.0021 25.7 5.6 48 60-108 105-153 (258)
58 PF11848 DUF3368: Domain of un 36.9 97 0.0021 18.9 4.3 39 32-72 8-48 (48)
59 COG0214 SNZ1 Pyridoxine biosyn 35.7 1.2E+02 0.0025 25.8 5.7 47 59-106 192-239 (296)
60 PRK15108 biotin synthase; Prov 35.2 1.2E+02 0.0026 26.1 6.0 37 62-101 114-150 (345)
61 COG0800 Eda 2-keto-3-deoxy-6-p 35.1 99 0.0021 25.2 5.1 49 60-109 2-50 (211)
62 PRK15447 putative protease; Pr 34.7 96 0.0021 26.1 5.3 49 59-107 48-98 (301)
63 cd08601 GDPD_SaGlpQ_like Glyce 34.5 81 0.0017 25.3 4.6 41 62-106 208-248 (256)
64 PF09508 Lact_bio_phlase: Lact 34.0 14 0.0003 35.1 0.1 65 34-101 255-329 (716)
65 cd08574 GDPD_GDE_2_3_6 Glycero 33.8 61 0.0013 26.3 3.8 37 62-102 213-249 (252)
66 cd08612 GDPD_GDE4 Glycerophosp 32.6 67 0.0014 26.8 3.9 43 61-107 250-292 (300)
67 COG5016 Pyruvate/oxaloacetate 32.0 2E+02 0.0043 26.2 6.9 86 13-105 64-176 (472)
68 PLN02417 dihydrodipicolinate s 31.6 2.1E+02 0.0046 23.5 6.8 38 72-109 69-108 (280)
69 cd08575 GDPD_GDE4_like Glycero 31.5 61 0.0013 26.5 3.5 43 61-107 220-262 (264)
70 COG0200 RplO Ribosomal protein 30.7 46 0.001 25.7 2.5 60 12-78 80-151 (152)
71 cd00951 KDGDH 5-dehydro-4-deox 30.7 2.3E+02 0.0049 23.4 6.8 51 59-110 50-107 (289)
72 cd08605 GDPD_GDE5_like_1_plant 30.5 67 0.0015 26.3 3.6 38 63-103 241-279 (282)
73 PRK05718 keto-hydroxyglutarate 30.3 1.1E+02 0.0023 24.7 4.6 48 61-109 5-52 (212)
74 PRK04147 N-acetylneuraminate l 30.0 2.8E+02 0.0061 22.8 7.3 52 59-110 54-112 (293)
75 PRK10358 putative rRNA methyla 29.6 90 0.0019 23.8 3.9 26 76-101 5-30 (157)
76 cd08570 GDPD_YPL206cp_fungi Gl 29.5 95 0.0021 24.6 4.2 41 62-106 194-234 (234)
77 cd08561 GDPD_cytoplasmic_ScUgp 29.3 1E+02 0.0022 24.6 4.4 41 62-106 202-242 (249)
78 cd08583 PI-PLCc_GDPD_SF_unchar 29.1 1E+02 0.0023 24.4 4.4 40 63-106 196-235 (237)
79 PRK06256 biotin synthase; Vali 28.9 1.3E+02 0.0028 25.2 5.2 40 62-103 129-168 (336)
80 cd00717 URO-D Uroporphyrinogen 28.9 97 0.0021 26.0 4.4 61 59-122 215-281 (335)
81 PRK00170 azoreductase; Reviewe 28.9 1.1E+02 0.0024 23.3 4.4 64 60-124 76-146 (201)
82 PF08513 LisH: LisH; InterPro 28.6 31 0.00068 18.6 0.9 14 31-44 6-19 (27)
83 CHL00200 trpA tryptophan synth 28.5 1.2E+02 0.0026 25.2 4.8 55 45-101 62-123 (263)
84 cd08607 GDPD_GDE5 Glycerophosp 27.6 87 0.0019 25.6 3.8 38 63-103 249-287 (290)
85 PLN02591 tryptophan synthase 27.5 1.2E+02 0.0025 25.1 4.5 55 45-101 49-110 (250)
86 cd06589 GH31 The enzymes of gl 27.4 73 0.0016 26.0 3.3 43 59-101 66-110 (265)
87 cd00530 PTE Phosphotriesterase 26.9 1.2E+02 0.0026 24.5 4.5 37 60-97 162-201 (293)
88 PF13405 EF-hand_6: EF-hand do 26.6 1E+02 0.0022 16.4 2.9 28 45-72 2-31 (31)
89 COG1212 KdsB CMP-2-keto-3-deox 26.3 3.8E+02 0.0083 22.4 7.2 45 59-103 50-94 (247)
90 PRK11639 zinc uptake transcrip 26.2 2.9E+02 0.0062 21.1 6.3 47 26-72 25-74 (169)
91 PRK10569 NAD(P)H-dependent FMN 26.2 77 0.0017 24.8 3.1 60 59-125 55-114 (191)
92 PRK15452 putative protease; Pr 26.1 92 0.002 28.0 3.9 48 60-107 47-99 (443)
93 PRK08255 salicylyl-CoA 5-hydro 25.3 2E+02 0.0043 27.4 6.2 23 59-81 475-500 (765)
94 COG4668 MtlA Mannitol/fructose 25.3 2.1E+02 0.0045 22.0 5.1 47 32-81 24-82 (142)
95 COG2260 Predicted Zn-ribbon RN 25.2 36 0.00078 22.4 0.8 17 68-84 20-36 (59)
96 PRK09462 fur ferric uptake reg 24.9 2.6E+02 0.0056 20.6 5.7 13 26-38 16-28 (148)
97 TIGR00683 nanA N-acetylneurami 24.8 2.3E+02 0.005 23.5 5.9 52 59-110 51-109 (290)
98 COG2876 AroA 3-deoxy-D-arabino 24.5 2E+02 0.0043 24.6 5.3 46 59-105 201-252 (286)
99 TIGR00433 bioB biotin syntheta 24.2 1.9E+02 0.0041 23.5 5.2 36 63-101 102-137 (296)
100 COG2861 Uncharacterized protei 24.1 1.8E+02 0.0038 24.4 4.9 47 59-107 194-241 (250)
101 cd08565 GDPD_pAtGDE_like Glyce 24.0 1.6E+02 0.0034 23.6 4.6 41 62-107 192-232 (235)
102 COG5064 SRP1 Karyopherin (impo 23.9 1.1E+02 0.0023 27.6 3.7 36 9-45 382-419 (526)
103 PRK13125 trpA tryptophan synth 23.7 1.6E+02 0.0035 23.7 4.7 52 59-110 88-142 (244)
104 COG0529 CysC Adenylylsulfate k 23.7 2.1E+02 0.0045 23.2 5.1 76 27-107 34-129 (197)
105 PF03009 GDPD: Glycerophosphor 23.3 1.7E+02 0.0036 22.4 4.5 41 62-106 212-254 (256)
106 PF01208 URO-D: Uroporphyrinog 23.3 68 0.0015 26.8 2.4 64 59-124 220-288 (343)
107 cd08604 GDPD_SHV3_repeat_2 Gly 23.3 1.1E+02 0.0024 25.6 3.7 42 63-107 241-295 (300)
108 PRK08446 coproporphyrinogen II 23.2 2.2E+02 0.0048 24.2 5.6 46 55-102 57-113 (350)
109 cd00952 CHBPH_aldolase Trans-o 22.8 3.5E+02 0.0075 22.7 6.6 38 72-109 76-115 (309)
110 PRK07565 dihydroorotate dehydr 22.7 2.1E+02 0.0045 24.2 5.3 46 61-107 153-200 (334)
111 cd08609 GDPD_GDE3 Glycerophosp 22.5 1.2E+02 0.0025 25.9 3.7 42 62-107 235-276 (315)
112 PF04309 G3P_antiterm: Glycero 22.4 3.1E+02 0.0066 21.6 5.8 42 59-101 31-76 (175)
113 PRK07094 biotin synthase; Prov 22.3 2E+02 0.0043 23.9 5.1 39 61-101 105-143 (323)
114 cd08606 GDPD_YPL110cp_fungi Gl 22.3 1.4E+02 0.0031 24.3 4.1 41 63-106 236-277 (286)
115 TIGR01463 mtaA_cmuA methyltran 21.9 1.1E+02 0.0024 25.6 3.5 61 59-123 220-286 (340)
116 PLN02389 biotin synthase 21.9 3E+02 0.0065 24.1 6.2 39 62-103 156-194 (379)
117 PF07499 RuvA_C: RuvA, C-termi 21.8 1.9E+02 0.0042 17.3 4.0 37 30-68 4-42 (47)
118 PF09868 DUF2095: Uncharacteri 21.8 2.2E+02 0.0048 21.3 4.6 10 59-68 75-84 (128)
119 PRK07259 dihydroorotate dehydr 21.6 2.5E+02 0.0054 23.2 5.5 47 61-107 145-192 (301)
120 PF13720 Acetyltransf_11: Udp 21.6 1.2E+02 0.0027 20.6 3.1 34 36-71 23-60 (83)
121 cd08602 GDPD_ScGlpQ1_like Glyc 21.3 1.1E+02 0.0023 25.9 3.2 41 63-106 257-309 (309)
122 KOG3040 Predicted sugar phosph 21.0 1.1E+02 0.0025 25.4 3.2 17 2-18 57-73 (262)
123 PF04135 Nop10p: Nucleolar RNA 20.8 58 0.0012 20.9 1.1 15 70-84 22-36 (53)
124 PRK09856 fructoselysine 3-epim 20.8 1.5E+02 0.0033 23.7 3.9 19 86-104 15-33 (275)
125 cd08610 GDPD_GDE6 Glycerophosp 20.8 1.5E+02 0.0032 25.3 4.0 42 62-107 235-276 (316)
126 PRK06582 coproporphyrinogen II 20.8 2.3E+02 0.005 24.7 5.3 40 62-103 82-127 (390)
127 COG0856 Orotate phosphoribosyl 20.7 75 0.0016 25.6 2.0 20 59-78 155-174 (203)
128 PRK13209 L-xylulose 5-phosphat 20.7 1.4E+02 0.0031 24.0 3.8 17 88-104 25-41 (283)
129 COG0502 BioB Biotin synthase a 20.4 1.3E+02 0.0028 26.3 3.5 42 60-103 119-160 (335)
130 PRK03620 5-dehydro-4-deoxygluc 20.1 4.9E+02 0.011 21.6 7.0 49 59-109 57-113 (303)
131 cd04724 Tryptophan_synthase_al 20.1 2.2E+02 0.0048 23.0 4.7 55 45-101 47-108 (242)
No 1
>COG0613 Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]
Probab=99.58 E-value=6.5e-15 Score=121.73 Aligned_cols=122 Identities=27% Similarity=0.359 Sum_probs=105.5
Q ss_pred HHHhCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC---------CCHHHHHHHHHhcCCe
Q 046751 4 KLNKLKLPLKWENVAKIAGKGVAPGRLHVARAMVEAGHVENLKHAFADISMMGDM---------HTPQVVVELIHRTSGL 74 (155)
Q Consensus 4 ~L~~~G~~I~~e~v~~~a~~~~~i~r~Hia~~Lv~~g~~~~~~~af~~~~~l~~g---------~~~~e~I~~I~~aGGv 74 (155)
++...+++-.++.+...++.+ .+.|+|+++.+++.+++++....|++| +..+ .+.+..|..++.+||+
T Consensus 110 ~~~~~~~~h~~~~~~~~~~~~-~~~~~h~~~~~ve~~~~~~~~~~fn~~--~~~~~~~~~~~~~~~~~~~i~~~~ga~g~ 186 (258)
T COG0613 110 RLGKAIIPHPFEGARKLAGLG-AITRAHIARDAVEVGNASTRQGVFNKY--LKRGAPKYVPPEWADSEAHVGAIHGAGGT 186 (258)
T ss_pred hCCccccCcchHHHHhcCCcc-cchhhhhhhhhhccccccchHHHHHHH--HhccCcccCcccccCHHHHHHHHhhceeE
Confidence 344457788888887777654 478999999999999999999999999 7665 7999999999999999
Q ss_pred EEecCCCCcCCh-HHHHHHHHHcCCCEEEEecCCCCc----------ccccceeeecCCCCCCCc
Q 046751 75 AVLAHPWALKNP-AAIIRKLKDVGLHRLEVYRSDGKL----------VGVIFTLQDGSHYESKKE 128 (155)
Q Consensus 75 ~VlAHP~~~~~~-~~~l~~l~~~GldGIEv~~~~~~~----------~~~~L~~tgGSD~H~~~~ 128 (155)
+|+|||.+++.. ..++..+++.|.||+|++++..++ +.++++.|+|||||.+..
T Consensus 187 ~v~ahp~r~~~~~~~lv~~~~~~~~~~ie~~~~~~~~~~~~~~~~~~k~~~~l~s~gs~fh~~~~ 251 (258)
T COG0613 187 AVLAHPGRYDLSLKRLVEAFADHGGDGIEVIYGAISPNPREVLALLAKEFGLLASVGSDFHTPGD 251 (258)
T ss_pred EEeccccccccchhHHHHHHHhcCCCceEEecccCCcchHHHHHHHHHHhhhhhcccccccCCCc
Confidence 999999987643 678899999999999999999887 368999999999998764
No 2
>PRK09248 putative hydrolase; Validated
Probab=98.79 E-value=1.4e-08 Score=82.70 Aligned_cols=79 Identities=18% Similarity=0.175 Sum_probs=60.4
Q ss_pred CHHHHHHHHHhcCCeEEecCCCCcC---ChHHHHHHHHHcCCCEEEEecCCC------C--c--------ccccceeeec
Q 046751 60 TPQVVVELIHRTSGLAVLAHPWALK---NPAAIIRKLKDVGLHRLEVYRSDG------K--L--------VGVIFTLQDG 120 (155)
Q Consensus 60 ~~~e~I~~I~~aGGv~VlAHP~~~~---~~~~~l~~l~~~GldGIEv~~~~~------~--~--------~~~~L~~tgG 120 (155)
.++++++++ ++|++.|||||.+.. ...++++.+++.|+ +||+.+++. + + .++|++.|.|
T Consensus 114 ~~~~~i~~l-~~g~~~vLAHP~~~~~~~~~~~~~~~~~~~g~-~lEvN~~~l~~~~~g~~~~~~~~~~~~~~~g~~~~~g 191 (246)
T PRK09248 114 NTQALINAI-KNGRVDIIGHPGNPKYPIDIEAVVKAAKEHNV-ALEINNSSFGHSRKGSEDNCRAIAALCKKAGVWVALG 191 (246)
T ss_pred HHHHHHHHH-hcCCCCEEECcCCCCCcccHHHHHHHHHHhCC-EEEEECCCCccCCCCCcChHHHHHHHHHHcCCeEEEe
Confidence 356778888 899999999998643 23567788888888 999988754 1 1 3789999999
Q ss_pred CCCCCCCcccceeeEeeehhhhhh
Q 046751 121 SHYESKKEIESIVLEILCSIIYLM 144 (155)
Q Consensus 121 SD~H~~~~~~~~~~~~~~~~~~~~ 144 (155)
||+|.+.+++ + +..++-++.
T Consensus 192 SDAH~~~~vg-~---~~~~~~~~~ 211 (246)
T PRK09248 192 SDAHIAFDIG-N---FEEALKILD 211 (246)
T ss_pred CCCCChhhhc-c---HHHHHHHHH
Confidence 9999999998 4 444444443
No 3
>TIGR00375 conserved hypothetical protein TIGR00375. The member of this family from Methanococcus jannaschii, MJ0043, is considerably longer and appears to contain an intein N-terminal to the region of homology.
Probab=98.33 E-value=1.1e-06 Score=76.60 Aligned_cols=81 Identities=11% Similarity=-0.052 Sum_probs=61.4
Q ss_pred CCHHHHHHHHHhcCCeEEecCCCCcCC----hHHHHHHHHHcCCCEEEEecCCCCc------ccccceeeecCCCCCCC-
Q 046751 59 HTPQVVVELIHRTSGLAVLAHPWALKN----PAAIIRKLKDVGLHRLEVYRSDGKL------VGVIFTLQDGSHYESKK- 127 (155)
Q Consensus 59 ~~~~e~I~~I~~aGGv~VlAHP~~~~~----~~~~l~~l~~~GldGIEv~~~~~~~------~~~~L~~tgGSD~H~~~- 127 (155)
++..+.++.+++.||++|.||+++... ...-+.+.....-|+||+.++..+. +..++...++||+|.+.
T Consensus 114 ~~~~~~~~~v~~~gGi~iPAHiftP~~Sl~g~~~~~~~~~g~~p~avElglS~d~~ma~~~s~L~~~~~ISnSDAHsl~p 193 (374)
T TIGR00375 114 YETGLNLEKVQDYGGLFGPAHIFTPWTSLYKSGDSSSDCYVFDPDFVELGLSADTDMADHISELNDYPFLTNSDAHSLGP 193 (374)
T ss_pred ecHHHHHHHhhcCCeEEEeCCCCCCcccccccccchhhhhcCCCceEEEeccCCHHHHHHhHHhcCCCeEeecCCCCCCh
Confidence 678889999999999999999997431 0011111111122999999998775 35788999999999988
Q ss_pred -cccceeeEeeeh
Q 046751 128 -EIESIVLEILCS 139 (155)
Q Consensus 128 -~~~~~~~~~~~~ 139 (155)
++|+-++.|+..
T Consensus 194 ~~IGre~n~~~~~ 206 (374)
T TIGR00375 194 HRLGREFNQLEVQ 206 (374)
T ss_pred hHhCCceEEEecC
Confidence 999999999653
No 4
>PF13263 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3DCP_B.
Probab=97.51 E-value=1.3e-05 Score=51.68 Aligned_cols=29 Identities=14% Similarity=-0.017 Sum_probs=20.8
Q ss_pred ccccceeeecCCCCCCCcccceeeEeeeh
Q 046751 111 VGVIFTLQDGSHYESKKEIESIVLEILCS 139 (155)
Q Consensus 111 ~~~~L~~tgGSD~H~~~~~~~~~~~~~~~ 139 (155)
+++++++++|||+|.+..+|+.++.|+..
T Consensus 12 ~~~~lp~~~gSDAH~~~~vG~~~t~~~~~ 40 (56)
T PF13263_consen 12 EKYGLPFTGGSDAHFLEEVGRGYTEFEGP 40 (56)
T ss_dssp HHTT--EEEE--BSSGGGTTTTHHHH---
T ss_pred HHcCCCeEeEEcccChhhcCCEeeecccc
Confidence 48999999999999999999999999543
No 5
>PRK08392 hypothetical protein; Provisional
Probab=97.12 E-value=0.0015 Score=52.33 Aligned_cols=83 Identities=10% Similarity=0.083 Sum_probs=54.3
Q ss_pred HHHHHHHhcCCeEEecCCCCcC---------ChHHHHHHHHHcCCCEEEEecCCCCc--------ccccceeeecCCCCC
Q 046751 63 VVVELIHRTSGLAVLAHPWALK---------NPAAIIRKLKDVGLHRLEVYRSDGKL--------VGVIFTLQDGSHYES 125 (155)
Q Consensus 63 e~I~~I~~aGGv~VlAHP~~~~---------~~~~~l~~l~~~GldGIEv~~~~~~~--------~~~~L~~tgGSD~H~ 125 (155)
..++++ +.+.+-|+|||.... ...+.++.+++.| -.+|+-.....+ .+.|..+|-|||+|.
T Consensus 108 ~~~~~~-~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g-~~lEiNt~~~~p~~~~l~~~~~~G~~~~igSDAH~ 185 (215)
T PRK08392 108 LVKLAL-MDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYG-KAFEISSRYRVPDLEFIRECIKRGIKLTFASDAHR 185 (215)
T ss_pred HHHHHH-hcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhC-CEEEEeCCCCCCCHHHHHHHHHcCCEEEEeCCCCC
Confidence 344555 568999999996321 1234556666665 789987532222 377999999999999
Q ss_pred CCcccceeeEeeehhhhhhhhhhhhhc
Q 046751 126 KKEIESIVLEILCSIIYLMRESEFESQ 152 (155)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (155)
+.++|. |+.++- +.|+--|+.|
T Consensus 186 ~~~vg~----~~~a~~-~~~~~g~~~~ 207 (215)
T PRK08392 186 PEDVGN----VSWSLK-VFKKAGGKKE 207 (215)
T ss_pred hHHCCc----HHHHHH-HHHHcCCCHH
Confidence 999995 555544 3444455443
No 6
>PRK07328 histidinol-phosphatase; Provisional
Probab=97.05 E-value=0.001 Score=54.85 Aligned_cols=70 Identities=16% Similarity=0.121 Sum_probs=48.5
Q ss_pred HHHHHHHhcCCeEEecCCCCcC-----C-------hHHHHHHHHHcCCCEEEEecCCCCc---------------ccccc
Q 046751 63 VVVELIHRTSGLAVLAHPWALK-----N-------PAAIIRKLKDVGLHRLEVYRSDGKL---------------VGVIF 115 (155)
Q Consensus 63 e~I~~I~~aGGv~VlAHP~~~~-----~-------~~~~l~~l~~~GldGIEv~~~~~~~---------------~~~~L 115 (155)
.+++++. .+.+-|+|||.... . .+++++.+++.| -++|+-.+..+. .++|.
T Consensus 145 ~~~~~~~-~~~~dvlgH~d~i~~~~~~~~~~~~~~~~~il~~~~~~g-~~lEiNt~~~r~~~~~~yp~~~il~~~~~~g~ 222 (269)
T PRK07328 145 LVEQAAR-SGLFDIIGHPDLIKKFGHRPREDLTELYEEALDVIAAAG-LALEVNTAGLRKPVGEIYPSPALLRACRERGI 222 (269)
T ss_pred HHHHHHH-cCCCCEeeCccHHHHcCCCCchhHHHHHHHHHHHHHHcC-CEEEEEchhhcCCCCCCCCCHHHHHHHHHcCC
Confidence 3455554 67899999997421 0 134556666655 589988753221 37899
Q ss_pred eeeecCCCCCCCcccceee
Q 046751 116 TLQDGSHYESKKEIESIVL 134 (155)
Q Consensus 116 ~~tgGSD~H~~~~~~~~~~ 134 (155)
.+|-|||+|.+.++|.++.
T Consensus 223 ~itigSDAH~~~~vg~~~~ 241 (269)
T PRK07328 223 PVVLGSDAHRPEEVGFGFA 241 (269)
T ss_pred CEEEeCCCCCHHHHhccHH
Confidence 9999999999999997543
No 7
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=96.82 E-value=0.0015 Score=53.53 Aligned_cols=71 Identities=17% Similarity=0.079 Sum_probs=47.6
Q ss_pred HHHHHHHhcCCeEEecCCCCcC----C--------------hHHHHHHHHHcCCCEEEEecCCCCc--------------
Q 046751 63 VVVELIHRTSGLAVLAHPWALK----N--------------PAAIIRKLKDVGLHRLEVYRSDGKL-------------- 110 (155)
Q Consensus 63 e~I~~I~~aGGv~VlAHP~~~~----~--------------~~~~l~~l~~~GldGIEv~~~~~~~-------------- 110 (155)
.+.++++...-.-|+|||.... . .+++++.+++.| -+||+-.+..+.
T Consensus 146 ~~~~~i~~~~~~dvlgH~Dli~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~g-~~lEiNt~g~r~~~~~~yP~~~il~~ 224 (253)
T TIGR01856 146 SVYDSIQALFKPLVIGHIDLVQKFGPLFTDVSSFSDEVYELLQRILKLVASQG-KALEFNTSGLRKPLEEAYPSKELLNL 224 (253)
T ss_pred HHHHHHHcCCCCCCcccHhHHHHhCccccccccccHHHHHHHHHHHHHHHHcC-CEEEEEcHhhcCCCCCCCCCHHHHHH
Confidence 3445566543357999995311 1 134555555655 689998764321
Q ss_pred -ccccceeeecCCCCCCCcccceee
Q 046751 111 -VGVIFTLQDGSHYESKKEIESIVL 134 (155)
Q Consensus 111 -~~~~L~~tgGSD~H~~~~~~~~~~ 134 (155)
.++|..+|-|||+|.+.++|.++.
T Consensus 225 ~~~~g~~itlgSDAH~~~~vg~~~~ 249 (253)
T TIGR01856 225 AKELGIPLVLGSDAHGPGDVGLSYH 249 (253)
T ss_pred HHHcCCCEEecCCCCCHHHHhhhHH
Confidence 377999999999999999998654
No 8
>PRK08123 histidinol-phosphatase; Reviewed
Probab=96.60 E-value=0.0038 Score=51.64 Aligned_cols=71 Identities=17% Similarity=0.101 Sum_probs=46.6
Q ss_pred HHHHHHHhcCC---eEEecCCCC---c----C---------ChHHHHHHHHHcCCCEEEEecCCCC--------c-----
Q 046751 63 VVVELIHRTSG---LAVLAHPWA---L----K---------NPAAIIRKLKDVGLHRLEVYRSDGK--------L----- 110 (155)
Q Consensus 63 e~I~~I~~aGG---v~VlAHP~~---~----~---------~~~~~l~~l~~~GldGIEv~~~~~~--------~----- 110 (155)
...+++....+ +-|+|||.. + . ..+++++.+++.| -+||+-.++.+ |
T Consensus 157 ~~~~~~~~~~~~~~~dvlgH~Dli~r~~~~~~~~~~~~~~~~~~~il~~~~~~g-~~lEINtsgl~~~~~~~~yP~~~il 235 (270)
T PRK08123 157 TVLQSIEADLGPYKPKRIGHITLVRKFQKLFPPDFDEKNKELIEDILALIKKRG-YELDFNTAGLRKPYCGEPYPPGEII 235 (270)
T ss_pred HHHHHHHhcccccCCCEeecchHHHHhCccCCcccCHHHHHHHHHHHHHHHHcC-CEEEEEchhhcCCCCCCCCCcHHHH
Confidence 34444444322 569999961 1 1 0134566666665 58998875322 1
Q ss_pred ---ccccceeeecCCCCCCCcccceee
Q 046751 111 ---VGVIFTLQDGSHYESKKEIESIVL 134 (155)
Q Consensus 111 ---~~~~L~~tgGSD~H~~~~~~~~~~ 134 (155)
.++|.++|-|||+|.+.++|.++-
T Consensus 236 ~~~~e~g~~itlgSDAH~~~~vg~~f~ 262 (270)
T PRK08123 236 TLAKKLGIPLVYGSDAHSAADVGRGYD 262 (270)
T ss_pred HHHHHcCCCEEEeCCCCCHHHHHhhHH
Confidence 377999999999999999998654
No 9
>PRK05588 histidinol-phosphatase; Provisional
Probab=96.16 E-value=0.0077 Score=49.17 Aligned_cols=70 Identities=13% Similarity=0.058 Sum_probs=46.5
Q ss_pred HHHHHHHhcCCeEEecCCCCcC-------------Ch----HHHHHHHHHcCCCEEEEecCCCCc--------------c
Q 046751 63 VVVELIHRTSGLAVLAHPWALK-------------NP----AAIIRKLKDVGLHRLEVYRSDGKL--------------V 111 (155)
Q Consensus 63 e~I~~I~~aGGv~VlAHP~~~~-------------~~----~~~l~~l~~~GldGIEv~~~~~~~--------------~ 111 (155)
..++++...+-+-|+|||.... .. .++++.+++.| -++|+-.++... .
T Consensus 128 ~~~~~v~~~~~~dvlgH~Dl~~r~~~~~~~~~~~~~~~~~~~~il~~~~~~g-~~lEINt~~l~~~~~~~~~~~~l~~~~ 206 (255)
T PRK05588 128 NMLKCLEKYDFIDSLGHIDYISRYAKYEDKEIYYDEFKEIIDEILKVLIEKE-KVLEINTRRLDDKRSVENLVKIYKRFY 206 (255)
T ss_pred HHHHHHHhcCCCCCccCHhHHHHcCccccccccHHHHHHHHHHHHHHHHHcC-CEEEEECcccCCCCCCCCHHHHHHHHH
Confidence 4556666677799999996321 01 34455555555 588987754321 2
Q ss_pred cccce-eeecCCCCCCCccccee
Q 046751 112 GVIFT-LQDGSHYESKKEIESIV 133 (155)
Q Consensus 112 ~~~L~-~tgGSD~H~~~~~~~~~ 133 (155)
+.|.. +|-|||+|.+.+++.++
T Consensus 207 ~~g~~~i~lgSDAH~~~~vg~~~ 229 (255)
T PRK05588 207 ELGGKYITLGSDAHNIEDIGNNF 229 (255)
T ss_pred HcCCcEEEEECCCCCHHHHHhhH
Confidence 45555 79999999999998754
No 10
>PRK07945 hypothetical protein; Provisional
Probab=96.10 E-value=0.016 Score=49.77 Aligned_cols=67 Identities=9% Similarity=0.126 Sum_probs=46.7
Q ss_pred HHHHHHHhcCCeEEecCCCC---c------C----ChHHHHHHHHHcCCCEEEEecCCCCc----------ccccceeee
Q 046751 63 VVVELIHRTSGLAVLAHPWA---L------K----NPAAIIRKLKDVGLHRLEVYRSDGKL----------VGVIFTLQD 119 (155)
Q Consensus 63 e~I~~I~~aGGv~VlAHP~~---~------~----~~~~~l~~l~~~GldGIEv~~~~~~~----------~~~~L~~tg 119 (155)
..++++. .+.+-|+|||.. + . ...++++.+++.| -+||+-.+..+. .++|..+|-
T Consensus 212 ~l~~ai~-~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~~e~g-~~lEINt~~~r~~P~~~il~~a~e~G~~vti 289 (335)
T PRK07945 212 RMLAAVA-NPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAACREHG-TAVEINSRPERRDPPTRLLRLALDAGCLFSI 289 (335)
T ss_pred HHHHHhc-CCCCeEEecCchhhhccccCCCChhhcCHHHHHHHHHHhC-CEEEEeCCCCCCCChHHHHHHHHHcCCeEEe
Confidence 3444554 677999999941 1 0 1245666666665 589998765432 478999999
Q ss_pred cCCCCCCCcccc
Q 046751 120 GSHYESKKEIES 131 (155)
Q Consensus 120 GSD~H~~~~~~~ 131 (155)
|||+|.+.+++.
T Consensus 290 gSDAH~p~~v~~ 301 (335)
T PRK07945 290 DTDAHAPGQLDW 301 (335)
T ss_pred cCCCCChhhcch
Confidence 999999998864
No 11
>PRK06361 hypothetical protein; Provisional
Probab=96.09 E-value=0.0094 Score=47.15 Aligned_cols=62 Identities=15% Similarity=0.115 Sum_probs=44.4
Q ss_pred HHHHHhcCCeEEecCCCCcCChHHHHHHHHHcCCCEEEEecCCCCc----------ccccceeeecCCCCCCCccc
Q 046751 65 VELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVYRSDGKL----------VGVIFTLQDGSHYESKKEIE 130 (155)
Q Consensus 65 I~~I~~aGGv~VlAHP~~~~~~~~~l~~l~~~GldGIEv~~~~~~~----------~~~~L~~tgGSD~H~~~~~~ 130 (155)
++++ +.|-+-|+|||.... .+.++.+++ .--.||+..+.... +++|+.+|.|||+|.+.+++
T Consensus 106 ~~a~-~~~~~dvlaHpd~~~--~~~~~~~~~-~~~~lEin~~~~~~~~~~~~l~~a~~~gi~vv~~SDaH~~~d~~ 177 (212)
T PRK06361 106 LAAI-ECEDVDILAHPGLIT--EEEAELAAE-NGVFLEITARKGHSLTNGHVARIAREAGAPLVINTDTHAPSDLI 177 (212)
T ss_pred HHHH-hCCCCcEecCcchhh--HHHHHHHHH-cCeEEEEECCCCcccchHHHHHHHHHhCCcEEEECCCCCHHHHH
Confidence 4444 678899999997543 355555554 46789997643222 37899999999999888876
No 12
>PRK06740 histidinol-phosphatase; Validated
Probab=96.03 E-value=0.011 Score=50.75 Aligned_cols=69 Identities=17% Similarity=0.104 Sum_probs=47.0
Q ss_pred HHHHHHHhcCCeEEecCCCCcC-------------ChHHHHHHHHHcCCCEEEEecCC-CC-------c--------ccc
Q 046751 63 VVVELIHRTSGLAVLAHPWALK-------------NPAAIIRKLKDVGLHRLEVYRSD-GK-------L--------VGV 113 (155)
Q Consensus 63 e~I~~I~~aGGv~VlAHP~~~~-------------~~~~~l~~l~~~GldGIEv~~~~-~~-------~--------~~~ 113 (155)
..++++ +.|-+-|+|||...+ ...++++.+++.| -++|+-.+. .+ + .++
T Consensus 206 ~~~~~i-~~~~fdvIgHpDlik~f~~~~~~~~~~~~~~~I~~a~~~~g-~~lEINt~~~~r~~~~e~yP~~~il~~~~e~ 283 (331)
T PRK06740 206 TVECAI-RSELFDIIAHLDNIKVFNYRLDENEQLSYYKEIARALVETN-TATEINAGLYYRYPVREMCPSPLFLQVLAKH 283 (331)
T ss_pred HHHHHH-HcCCCCEeeCccHHHhcCCCcchhhhHHHHHHHHHHHHHcC-CEEEEECccccCCCCCCCCcCHHHHHHHHHC
Confidence 345555 578999999996221 0123444444544 588988752 21 1 378
Q ss_pred cceeeecCCCCCCCccccee
Q 046751 114 IFTLQDGSHYESKKEIESIV 133 (155)
Q Consensus 114 ~L~~tgGSD~H~~~~~~~~~ 133 (155)
|..+|-|||+|.+.++|..+
T Consensus 284 Gv~~tlgSDAH~p~~VG~~~ 303 (331)
T PRK06740 284 EVPITLSSDAHYPNDLGKYV 303 (331)
T ss_pred CCeEEEeeCCCCHHHHHhHH
Confidence 99999999999999999865
No 13
>PRK08609 hypothetical protein; Provisional
Probab=95.49 E-value=0.036 Score=50.82 Aligned_cols=71 Identities=14% Similarity=0.184 Sum_probs=47.8
Q ss_pred HHhcCCeEEecCCCC-----cCC----hHHHHHHHHHcCCCEEEEecCCCCc----------ccccceeeecCCCCCCCc
Q 046751 68 IHRTSGLAVLAHPWA-----LKN----PAAIIRKLKDVGLHRLEVYRSDGKL----------VGVIFTLQDGSHYESKKE 128 (155)
Q Consensus 68 I~~aGGv~VlAHP~~-----~~~----~~~~l~~l~~~GldGIEv~~~~~~~----------~~~~L~~tgGSD~H~~~~ 128 (155)
+-+.|.+.|+|||.+ +.. .+++++.+++.| -.+|+-.+..+. .++|..+|-|||+|.+.+
T Consensus 454 a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G-~~lEINa~~~r~~~~~~~~~~~~e~Gv~i~igSDAH~~~~ 532 (570)
T PRK08609 454 ACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETN-TALELNANPNRLDLSAEHLKKAQEAGVKLAINTDAHHTEM 532 (570)
T ss_pred HhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhC-CEEEEcCCccccCccHHHHHHHHHcCCEEEEECCCCChhh
Confidence 345789999999983 111 134444445554 689988764331 378999999999999998
Q ss_pred ccceeeEeeehhhhh
Q 046751 129 IESIVLEILCSIIYL 143 (155)
Q Consensus 129 ~~~~~~~~~~~~~~~ 143 (155)
++ -++.++..+
T Consensus 533 l~----~~~~~v~~a 543 (570)
T PRK08609 533 LD----DMKYGVATA 543 (570)
T ss_pred hC----cHHHHHHHH
Confidence 84 355555433
No 14
>PRK07329 hypothetical protein; Provisional
Probab=95.41 E-value=0.015 Score=47.45 Aligned_cols=71 Identities=20% Similarity=0.054 Sum_probs=47.6
Q ss_pred HHHHHHHHhcCCeEEecCCCCc-C-------C-------hHHHHHHHHHcCCCEEEEecCCCCc--------------cc
Q 046751 62 QVVVELIHRTSGLAVLAHPWAL-K-------N-------PAAIIRKLKDVGLHRLEVYRSDGKL--------------VG 112 (155)
Q Consensus 62 ~e~I~~I~~aGGv~VlAHP~~~-~-------~-------~~~~l~~l~~~GldGIEv~~~~~~~--------------~~ 112 (155)
+..++++...|=+-|+|||... + . .+++++.+++.| -.+|+-.+.... .+
T Consensus 128 ~~~~~~v~~~~~fdvlgHpDl~~r~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~lEiNt~~~~~~~~~~~~~~~l~~~~~ 206 (246)
T PRK07329 128 EKMEEAIGRVHDADVLAHFDYGLRLFDLTVEELKAFEPQLTRIFAKMIDND-LAFELNTKSMYLYGNEGLYRYAIELYKQ 206 (246)
T ss_pred HHHHHHHHccCCCCEeeeccHHHHhCCCCCcChHHHHHHHHHHHHHHHHcC-CeEEEECcccccCCCCcchHHHHHHHHH
Confidence 4456666666689999999731 0 1 024455555654 588988764321 26
Q ss_pred ccc-eeeecCCCCCCCccccee
Q 046751 113 VIF-TLQDGSHYESKKEIESIV 133 (155)
Q Consensus 113 ~~L-~~tgGSD~H~~~~~~~~~ 133 (155)
+|. .+|-|||+|.+.+++.++
T Consensus 207 ~g~~~i~~gSDAH~~~~vg~~~ 228 (246)
T PRK07329 207 LGGKLFSIGSDAHKLEHYRYNF 228 (246)
T ss_pred cCCeEEEecCCCCCHHHHHHHH
Confidence 775 489999999999998754
No 15
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=94.89 E-value=0.063 Score=43.43 Aligned_cols=69 Identities=14% Similarity=0.106 Sum_probs=48.1
Q ss_pred HHHHHHHHHhcCCeEEecCCCCcC----ChHHHHHHHHHcCCCEEEEecCCC-------C-------c------ccccce
Q 046751 61 PQVVVELIHRTSGLAVLAHPWALK----NPAAIIRKLKDVGLHRLEVYRSDG-------K-------L------VGVIFT 116 (155)
Q Consensus 61 ~~e~I~~I~~aGGv~VlAHP~~~~----~~~~~l~~l~~~GldGIEv~~~~~-------~-------~------~~~~L~ 116 (155)
.+.+.+.+.+.+++-|++||+... .....++..++.| -++|+-++.- + . +++|.+
T Consensus 91 ~~~~~~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~g-v~lEIn~s~~~~~~~~~r~~~~~~~~~~~~~~~~~g~p 169 (237)
T PRK00912 91 DEKVNRAACENPRVDILSHPYTKRKDSGINHVLAKEAARNN-VAIEFNLRDILKSRGGRRARTLSNFRDNLALARKYDFP 169 (237)
T ss_pred CHHHHHHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHCC-eEEEEEchHhhhhcccHHHHHHHHHHHHHHHHHhcCCC
Confidence 344446788899999999998521 1234555555554 4778766521 0 0 378999
Q ss_pred eeecCCCCCCCccc
Q 046751 117 LQDGSHYESKKEIE 130 (155)
Q Consensus 117 ~tgGSD~H~~~~~~ 130 (155)
++.|||+|.+.+++
T Consensus 170 iiisSdAh~~~~l~ 183 (237)
T PRK00912 170 LVLTSGAMSCYDLR 183 (237)
T ss_pred EEEeCCCCcccccC
Confidence 99999999999885
No 16
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=93.62 E-value=0.045 Score=47.46 Aligned_cols=79 Identities=14% Similarity=0.045 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHhcCCeEEecCCCCcC----ChHHHHHHHH-HcCCCEEEEecCCCCc------ccccceeeecCCCCC--
Q 046751 59 HTPQVVVELIHRTSGLAVLAHPWALK----NPAAIIRKLK-DVGLHRLEVYRSDGKL------VGVIFTLQDGSHYES-- 125 (155)
Q Consensus 59 ~~~~e~I~~I~~aGGv~VlAHP~~~~----~~~~~l~~l~-~~GldGIEv~~~~~~~------~~~~L~~tgGSD~H~-- 125 (155)
++-.+..+++++.||+...||-|... ...+-+.+.- ..-+|.||.==|..+. +-+.++....||+|+
T Consensus 119 ~tg~el~e~v~dlggL~gPaHaFtPwtslYk~~dSl~e~yg~a~iDfvELGLSADtdmAD~I~el~~~pFLtNSDAHSp~ 198 (403)
T COG1379 119 LTGAELAEIVKDLGGLIGPAHAFTPWTSLYKKYDSLKECYGDAMIDFVELGLSADTDMADMIEELHRLPFLTNSDAHSPY 198 (403)
T ss_pred ccHHHHHHHHHHcccceecccccCccHHhhhhhchHHHHhCccchhHHHhccccCchHHHHHHHhccCCcccccccCCCc
Confidence 78889999999999999999966421 0112223322 2336777765555553 456788888999999
Q ss_pred CCcccceeeEee
Q 046751 126 KKEIESIVLEIL 137 (155)
Q Consensus 126 ~~~~~~~~~~~~ 137 (155)
++++|+-+.+|+
T Consensus 199 phrLgREfn~f~ 210 (403)
T COG1379 199 PHRLGREFNQFE 210 (403)
T ss_pred hhhhhhhhheee
Confidence 889999999993
No 17
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=89.61 E-value=1.2 Score=36.35 Aligned_cols=73 Identities=15% Similarity=0.174 Sum_probs=50.4
Q ss_pred HHHHHHHHHhcCCeEEecCCCCcC-----------ChHHHHHHHHHcCCCEEEEecCCCCc----------ccccceeee
Q 046751 61 PQVVVELIHRTSGLAVLAHPWALK-----------NPAAIIRKLKDVGLHRLEVYRSDGKL----------VGVIFTLQD 119 (155)
Q Consensus 61 ~~e~I~~I~~aGGv~VlAHP~~~~-----------~~~~~l~~l~~~GldGIEv~~~~~~~----------~~~~L~~tg 119 (155)
..+.+...-..+-+-|+|||+... ...+.++-+.+ ---++|.-.+.... +++|..+|=
T Consensus 113 ~~~~~~~a~~~~~v~il~H~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~aleins~~~~~~~~~~~~~~~~e~G~~~~i 191 (237)
T COG1387 113 YTERLIAAMSNGAVDILAHPGGRLLGRIDRGAYKEDIEELIELAEK-NGKALEINSRPGRLDPNSEILRLARELGVKLAI 191 (237)
T ss_pred HHHHHHHHHcCCCccEEecCCccccccccccccHHHHHHHHHHHHH-hCcEEeecCCcCccCchHHHHHHHHHhCCeEEe
Confidence 345666667778899999998521 11234443333 45688877663332 478999999
Q ss_pred cCCCCCCCcccceee
Q 046751 120 GSHYESKKEIESIVL 134 (155)
Q Consensus 120 GSD~H~~~~~~~~~~ 134 (155)
|||.|.+..+|....
T Consensus 192 ~tDaH~~~~lg~~~~ 206 (237)
T COG1387 192 GTDAHRPGDLGDMYF 206 (237)
T ss_pred ecCcCChhhcccchH
Confidence 999999999987654
No 18
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=88.22 E-value=0.81 Score=37.84 Aligned_cols=69 Identities=12% Similarity=0.062 Sum_probs=46.5
Q ss_pred CHHHHHHHHHhcCCeEEecCCCCcCC---hHHHHHHHHHcCCCEEEEecCCCCc--------------ccccceeeecCC
Q 046751 60 TPQVVVELIHRTSGLAVLAHPWALKN---PAAIIRKLKDVGLHRLEVYRSDGKL--------------VGVIFTLQDGSH 122 (155)
Q Consensus 60 ~~~e~I~~I~~aGGv~VlAHP~~~~~---~~~~l~~l~~~GldGIEv~~~~~~~--------------~~~~L~~tgGSD 122 (155)
...++.--|...|=+||+|||-|+.. ....+.+|++.|.- =-.++++-. -+-||.---+||
T Consensus 117 ya~~lf~elq~kGi~PIIAHPERn~~i~kn~~~lyeLid~ga~--sQvts~Sl~GlfGK~ikK~a~~~iE~~L~hFiASD 194 (254)
T COG4464 117 YADQLFFELQSKGIIPIIAHPERNRAIQKNPYLLYELIDKGAY--SQVTSSSLAGLFGKKIKKFALQLIEANLVHFIASD 194 (254)
T ss_pred hHHHHHHHHHHCCceeeeechhhHHHHHhChHHHHHHHhcccc--eeechHhHHhhhhHHHHHHHHHHHHcccceeeecc
Confidence 45667777889999999999998642 24678888876621 011111111 166899899999
Q ss_pred CCCCCccc
Q 046751 123 YESKKEIE 130 (155)
Q Consensus 123 ~H~~~~~~ 130 (155)
+|....--
T Consensus 195 AHn~~~R~ 202 (254)
T COG4464 195 AHNVDKRP 202 (254)
T ss_pred ccccCCCC
Confidence 99977543
No 19
>COG0613 Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]
Probab=84.16 E-value=0.31 Score=40.40 Aligned_cols=76 Identities=16% Similarity=0.049 Sum_probs=58.0
Q ss_pred CCHHHHHHHHHhcCCeEEecCCCCcCC----hHHHHHHHHHcCCCEEEEecCCCCc-----------ccccceeeecCCC
Q 046751 59 HTPQVVVELIHRTSGLAVLAHPWALKN----PAAIIRKLKDVGLHRLEVYRSDGKL-----------VGVIFTLQDGSHY 123 (155)
Q Consensus 59 ~~~~e~I~~I~~aGGv~VlAHP~~~~~----~~~~l~~l~~~GldGIEv~~~~~~~-----------~~~~L~~tgGSD~ 123 (155)
.+.++.++.|++.++.+...||+.... .....+... -.+.+|++|++... .+|+....++||.
T Consensus 98 ~~~~~~~~~i~~~~~~~~~~h~~~~~~~~~~~~~~~~~h~--~~~~ve~~~~~~~~~~fn~~~~~~~~~~~~~~~~~~~~ 175 (258)
T COG0613 98 LYREERLEEIKERLGKAIIPHPFEGARKLAGLGAITRAHI--ARDAVEVGNASTRQGVFNKYLKRGAPKYVPPEWADSEA 175 (258)
T ss_pred ccHHHHHHHHHHhCCccccCcchHHHHhcCCcccchhhhh--hhhhhccccccchHHHHHHHHhccCcccCcccccCHHH
Confidence 789999999999999999999984211 001112222 27899999997664 3778899999999
Q ss_pred CCCCcccceeeEe
Q 046751 124 ESKKEIESIVLEI 136 (155)
Q Consensus 124 H~~~~~~~~~~~~ 136 (155)
|-...++..++.+
T Consensus 176 ~i~~~~ga~g~~v 188 (258)
T COG0613 176 HVGAIHGAGGTAV 188 (258)
T ss_pred HHHHHhhceeEEE
Confidence 9988888888877
No 20
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=80.07 E-value=1.5 Score=44.71 Aligned_cols=64 Identities=16% Similarity=0.076 Sum_probs=42.8
Q ss_pred cCCCCCHHHHHHHHHh-cCCeEEecCCCCcCCh--HHHHH-----HHHHcCCCEEEEecCCCCc----------ccccce
Q 046751 55 MGDMHTPQVVVELIHR-TSGLAVLAHPWALKNP--AAIIR-----KLKDVGLHRLEVYRSDGKL----------VGVIFT 116 (155)
Q Consensus 55 l~~g~~~~e~I~~I~~-aGGv~VlAHP~~~~~~--~~~l~-----~l~~~GldGIEv~~~~~~~----------~~~~L~ 116 (155)
+..+++++++++.+++ .||.+++|||..++.. ...+. .+...++|++|+.+..+.. +.+|+.
T Consensus 480 L~~aps~~EaL~~f~~figg~vLVAHNa~FD~~fL~~~l~rlgl~~l~~~~IDTLelar~l~p~~k~~kL~~LAk~lGL~ 559 (1437)
T PRK00448 480 VKDAPSIEEVLPKFKEFCGDSILVAHNASFDVGFINTNYEKLGLEKIKNPVIDTLELSRFLYPELKSHRLNTLAKKFGVE 559 (1437)
T ss_pred HcCCCCHHHHHHHHHHHhCCCEEEEeCccccHHHHHHHHHHcCCccccccceeHHHHHHHHcCccccccHHHHHHHcCCC
Confidence 3444899999999999 8999999999865421 11111 2233567899988765532 356776
Q ss_pred ee
Q 046751 117 LQ 118 (155)
Q Consensus 117 ~t 118 (155)
.+
T Consensus 560 ~~ 561 (1437)
T PRK00448 560 LE 561 (1437)
T ss_pred CC
Confidence 64
No 21
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=79.14 E-value=4.9 Score=32.17 Aligned_cols=45 Identities=22% Similarity=0.207 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCCeEEecCCCCcCChHHHHHHHHHcCCCEEEEecCCCCcccccceeeecC-CCC
Q 046751 62 QVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVYRSDGKLVGVIFTLQDGS-HYE 124 (155)
Q Consensus 62 ~e~I~~I~~aGGv~VlAHP~~~~~~~~~l~~l~~~GldGIEv~~~~~~~~~~~L~~tgGS-D~H 124 (155)
..-+++|.++||++|+-.+.. ..+.++++++ -+||| +.|||. |.|
T Consensus 27 ~~Yv~~i~~aG~~pv~ip~~~---~~~~~~~~l~-~idGl--------------ll~GG~~Di~ 72 (217)
T PF07722_consen 27 ASYVKAIEAAGGRPVPIPYDA---DDEELDELLD-RIDGL--------------LLPGGGSDID 72 (217)
T ss_dssp HHHHHHHHHTT-EEEEE-SS-----HHHHHHHHH-CSSEE--------------EE---SS-T-
T ss_pred HHHHHHHHHcCCEEEEEccCC---CHHHHHHHHh-hcCEE--------------EEcCCccchh
Confidence 345899999999999885542 2456677766 58887 788888 874
No 22
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=75.59 E-value=10 Score=27.89 Aligned_cols=48 Identities=25% Similarity=0.186 Sum_probs=34.7
Q ss_pred HHHHHHHhcCCeEEecCCCCcCC----------hHHHHHHH---HHcCCCEEEEecCCCCc
Q 046751 63 VVVELIHRTSGLAVLAHPWALKN----------PAAIIRKL---KDVGLHRLEVYRSDGKL 110 (155)
Q Consensus 63 e~I~~I~~aGGv~VlAHP~~~~~----------~~~~l~~l---~~~GldGIEv~~~~~~~ 110 (155)
+.++.+++.|++.++|||..... .+++++.+ ....-..+|+..++.+.
T Consensus 109 ~~l~~~~~~~~~~i~ah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ein~~~~~k 169 (175)
T PF02811_consen 109 ELLEEYKDSGLLIILAHPDGYKFTGIEQKEYEEVEKIIDAFLEAIKKKGFALEINTSGLRK 169 (175)
T ss_dssp HHHHHHHHTTEEEEECSTTGTCTTCHHCTHHHHHHHHHHHHHHHHHHTTEEEEEEHSCCTC
T ss_pred HHHHHHHHCCCEEEEeCCCchHHHHHhcCCHHHHHHHHHHHHHHhCcCCEEEEEECCCCCC
Confidence 89999999999999999985432 13344444 34467888888876654
No 23
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=71.77 E-value=9 Score=31.91 Aligned_cols=46 Identities=26% Similarity=0.382 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCeEEecCCCCcCChHHHHHHHHHcCCCEEEEecCCCCcccccceeeecCCCC
Q 046751 61 PQVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVYRSDGKLVGVIFTLQDGSHYE 124 (155)
Q Consensus 61 ~~e~I~~I~~aGGv~VlAHP~~~~~~~~~l~~l~~~GldGIEv~~~~~~~~~~~L~~tgGSD~H 124 (155)
...-+++|..+||++++= |.. . ..+.+..+++ .+||+ +.|||||.|
T Consensus 28 ~~~yv~ai~~aGg~pill-P~~-~-d~~~~~~~l~-~iDgl--------------iltGg~nV~ 73 (243)
T COG2071 28 PYDYVDAIIKAGGIPILL-PAL-E-DPEDARQYLD-LIDGL--------------ILTGGSNVD 73 (243)
T ss_pred HHHHHHHHHHcCCceEEe-cCC-C-CHHHHHHHHh-hccEE--------------EecCCCcCC
Confidence 334567777799999987 432 1 2344555554 48887 777777775
No 24
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=66.85 E-value=20 Score=30.73 Aligned_cols=24 Identities=13% Similarity=0.290 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHhcCCeEE--ecCCCC
Q 046751 59 HTPQVVVELIHRTSGLAV--LAHPWA 82 (155)
Q Consensus 59 ~~~~e~I~~I~~aGGv~V--lAHP~~ 82 (155)
+.+.+.++.+|+.|+.++ |.|+++
T Consensus 77 ~~~~~l~~~vh~~g~~~~~QL~h~G~ 102 (353)
T cd02930 77 AGHRLITDAVHAEGGKIALQILHAGR 102 (353)
T ss_pred HHHHHHHHHHHHcCCEEEeeccCCCC
Confidence 567788999999998864 567664
No 25
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=66.66 E-value=9 Score=32.29 Aligned_cols=66 Identities=9% Similarity=0.140 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHhcC-CeEEecCCCC------cC-ChHHHHHHHHHcCCCEEEEecCCCCc--------------ccccce
Q 046751 59 HTPQVVVELIHRTS-GLAVLAHPWA------LK-NPAAIIRKLKDVGLHRLEVYRSDGKL--------------VGVIFT 116 (155)
Q Consensus 59 ~~~~e~I~~I~~aG-Gv~VlAHP~~------~~-~~~~~l~~l~~~GldGIEv~~~~~~~--------------~~~~L~ 116 (155)
.+++|+++..++-| ||.++.|=-. +. ..++.++.+.+.|+.||=+=.=.... ++|.|+
T Consensus 73 ~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~~Lm 152 (273)
T PF10566_consen 73 FDLPELVDYAKEKGVGIWLWYHSETGGNVANLEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEYKLM 152 (273)
T ss_dssp --HHHHHHHHHHTT-EEEEEEECCHTTBHHHHHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHTT-E
T ss_pred cCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHcCcE
Confidence 79999999999999 7888888543 21 24678899999999999876644332 389999
Q ss_pred eeecCCCCCCCc
Q 046751 117 LQDGSHYESKKE 128 (155)
Q Consensus 117 ~tgGSD~H~~~~ 128 (155)
+ |||+...
T Consensus 153 v----nfHg~~k 160 (273)
T PF10566_consen 153 V----NFHGATK 160 (273)
T ss_dssp E----EETTS--
T ss_pred E----EecCCcC
Confidence 9 9999754
No 26
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=66.01 E-value=11 Score=32.75 Aligned_cols=49 Identities=20% Similarity=0.242 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHhcCC-eEEe----cCCCCcCChHHHHHHHHHcCCCEEEEecCC
Q 046751 59 HTPQVVVELIHRTSG-LAVL----AHPWALKNPAAIIRKLKDVGLHRLEVYRSD 107 (155)
Q Consensus 59 ~~~~e~I~~I~~aGG-v~Vl----AHP~~~~~~~~~l~~l~~~GldGIEv~~~~ 107 (155)
..++++|+..|++|- +-|. .|+.......+.++.+.+.|+|+|++--|.
T Consensus 49 ~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDaviv~Dpg 102 (347)
T COG0826 49 EDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVELGVDAVIVADPG 102 (347)
T ss_pred HHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHcCCCEEEEcCHH
Confidence 457899999999998 3333 233322223578899999999999997765
No 27
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=61.10 E-value=24 Score=30.84 Aligned_cols=23 Identities=17% Similarity=0.121 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHhcCCeEE--ecCCC
Q 046751 59 HTPQVVVELIHRTSGLAV--LAHPW 81 (155)
Q Consensus 59 ~~~~e~I~~I~~aGGv~V--lAHP~ 81 (155)
..+..+.+.+|+.|+.++ |+|++
T Consensus 83 ~~~~~vt~avH~~G~~i~iQL~H~G 107 (363)
T COG1902 83 PGLKRLTEAVHAHGAKIFIQLWHAG 107 (363)
T ss_pred HHHHHHHHHHHhcCCeEEEEeccCc
Confidence 556788999999999876 57887
No 28
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=55.95 E-value=41 Score=28.55 Aligned_cols=19 Identities=5% Similarity=-0.118 Sum_probs=15.6
Q ss_pred CCHHHHHHHHHhcCCeEEe
Q 046751 59 HTPQVVVELIHRTSGLAVL 77 (155)
Q Consensus 59 ~~~~e~I~~I~~aGGv~Vl 77 (155)
+.+..+++.+|+.|+.+++
T Consensus 82 ~~~~~l~~~vh~~G~~~~~ 100 (338)
T cd04733 82 EAFREWAAAAKANGALIWA 100 (338)
T ss_pred HHHHHHHHHHHhcCCEEEE
Confidence 5567889999999998765
No 29
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=54.67 E-value=22 Score=28.56 Aligned_cols=34 Identities=12% Similarity=-0.066 Sum_probs=24.9
Q ss_pred hHHHHHHHHHcCCCEEEEecCCCCc--------ccccceeee
Q 046751 86 PAAIIRKLKDVGLHRLEVYRSDGKL--------VGVIFTLQD 119 (155)
Q Consensus 86 ~~~~l~~l~~~GldGIEv~~~~~~~--------~~~~L~~tg 119 (155)
..+.++.+++.|+||||...+.... +++||-+|+
T Consensus 17 l~~~l~~~a~~Gf~~VEl~~~~~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFMFPYDYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCCHHHHHHHHHHcCCcEEE
Confidence 3567888889999999987654322 378888875
No 30
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=54.52 E-value=16 Score=30.34 Aligned_cols=44 Identities=18% Similarity=0.213 Sum_probs=32.0
Q ss_pred CHHHHHHHHHhcCCeEEecCCCCcCChHHHHHHHHHcCCCEEEEecC
Q 046751 60 TPQVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVYRS 106 (155)
Q Consensus 60 ~~~e~I~~I~~aGGv~VlAHP~~~~~~~~~l~~l~~~GldGIEv~~~ 106 (155)
..++.|+.+|++-|+.|. ||..+. .+.+++|+++|+|||=.-+|
T Consensus 217 ~t~~~V~~~h~~~gl~V~--~WTVN~-~~~~~~l~~~GVDgIiTD~P 260 (263)
T cd08580 217 WTPAAVDCFRRNSKVKIV--LFGINT-ADDYRLAKCLGADAVMVDSP 260 (263)
T ss_pred CCHHHHHHHHhcCCcEEE--EEEeCC-HHHHHHHHHcCCCEEEeCCc
Confidence 346789999998446564 676544 56788999999999955444
No 31
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=53.05 E-value=28 Score=29.69 Aligned_cols=62 Identities=10% Similarity=0.201 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHhcCCeEEecCCCCcCChHHHHHHHHHcCCCEEEEecCCCCc----cccc--ceeeecCC
Q 046751 59 HTPQVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVYRSDGKL----VGVI--FTLQDGSH 122 (155)
Q Consensus 59 ~~~~e~I~~I~~aGGv~VlAHP~~~~~~~~~l~~l~~~GldGIEv~~~~~~~----~~~~--L~~tgGSD 122 (155)
+...++++.+++.||.++.-|+... ....++.+++.|.|++-+.+...+. +.++ +.+.|+=|
T Consensus 198 P~~krIi~~ik~~~g~piilH~cG~--~~~~l~~~~e~g~dvl~~d~~~~dl~eak~~~g~k~~l~GNlD 265 (321)
T cd03309 198 PRMQRIFDFLRSNTSALIVHHSCGA--AASLVPSMAEMGVDSWNVVMTANNTAELRRLLGDKVVLAGAID 265 (321)
T ss_pred HHHHHHHHHHHhccCCceEEEeCCC--cHHHHHHHHHcCCCEEEecCCCCCHHHHHHHhCCCeEEEcCCC
Confidence 5678899999999888888898753 2467889999999999887654343 2333 56666655
No 32
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=52.41 E-value=21 Score=28.48 Aligned_cols=35 Identities=6% Similarity=-0.221 Sum_probs=24.1
Q ss_pred hHHHHHHHHHcCCCEEEEecCCCCc--------ccccceeeec
Q 046751 86 PAAIIRKLKDVGLHRLEVYRSDGKL--------VGVIFTLQDG 120 (155)
Q Consensus 86 ~~~~l~~l~~~GldGIEv~~~~~~~--------~~~~L~~tgG 120 (155)
..+.++.+++.|+||||...+.... +++||-+++-
T Consensus 16 l~e~~~~~~e~G~~~vEl~~~~~~~~~~l~~~l~~~gl~v~~~ 58 (254)
T TIGR03234 16 FLERFAAAAQAGFTGVEYLFPYDWDAEALKARLAAAGLEQVLF 58 (254)
T ss_pred HHHHHHHHHHcCCCEEEecCCccCCHHHHHHHHHHcCCeEEEE
Confidence 3567788888888888887654322 3677777664
No 33
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=51.43 E-value=50 Score=28.34 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHhcCCeEE--ecCCCC
Q 046751 59 HTPQVVVELIHRTSGLAV--LAHPWA 82 (155)
Q Consensus 59 ~~~~e~I~~I~~aGGv~V--lAHP~~ 82 (155)
+.+.++++.+|+.|+.++ |.|+++
T Consensus 81 ~~~r~l~d~vh~~G~~i~~QL~H~G~ 106 (337)
T PRK13523 81 EGLHKLVTFIHDHGAKAAIQLAHAGR 106 (337)
T ss_pred HHHHHHHHHHHhcCCEEEEEccCCCC
Confidence 566788999999998874 468765
No 34
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=51.25 E-value=35 Score=26.98 Aligned_cols=42 Identities=12% Similarity=0.286 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCeEEecCCCCcCChHHHHHHHHHcCCCEEEEecCC
Q 046751 62 QVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVYRSD 107 (155)
Q Consensus 62 ~e~I~~I~~aGGv~VlAHP~~~~~~~~~l~~l~~~GldGIEv~~~~ 107 (155)
.+.++.+|++| +.|.+. ..+ ..+.+..+.+.|+|||..-+|.
T Consensus 191 ~~~v~~~~~~G-~~v~~w--Tvn-~~~~~~~l~~~GVdgi~TD~p~ 232 (233)
T cd08582 191 PAFIKALRDAG-LKLNVW--TVD-DAEDAKRLIELGVDSITTNRPG 232 (233)
T ss_pred HHHHHHHHHCC-CEEEEE--eCC-CHHHHHHHHHCCCCEEEcCCCC
Confidence 46677777774 555543 222 3467788899999999877764
No 35
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=50.79 E-value=50 Score=28.29 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=17.5
Q ss_pred CCHHHHHHHHHhcCCeEE--ecCCCC
Q 046751 59 HTPQVVVELIHRTSGLAV--LAHPWA 82 (155)
Q Consensus 59 ~~~~e~I~~I~~aGGv~V--lAHP~~ 82 (155)
+.+.+.++.+|+.|+.++ |.|+++
T Consensus 77 ~~~~~l~~~vh~~g~~~~~Ql~H~G~ 102 (343)
T cd04734 77 PGFRRLAEAVHAHGAVIMIQLTHLGR 102 (343)
T ss_pred HHHHHHHHHHHhcCCeEEEeccCCCc
Confidence 456678999999998755 467653
No 36
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=49.55 E-value=89 Score=23.44 Aligned_cols=63 Identities=21% Similarity=0.213 Sum_probs=39.4
Q ss_pred HHhCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC---CCHHHHHHHHHhcCCeEEecCCC
Q 046751 19 KIAGKGVAPGRLHVARAMVEAGHVENLKHAFADISMMGDM---HTPQVVVELIHRTSGLAVLAHPW 81 (155)
Q Consensus 19 ~~a~~~~~i~r~Hia~~Lv~~g~~~~~~~af~~~~~l~~g---~~~~e~I~~I~~aGGv~VlAHP~ 81 (155)
+.++-..++.|.-|+++|.+.+-.-+..+.|+...+-+++ .|+..++++..++|=|-.++-..
T Consensus 13 k~~glr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~~~~~~~ 78 (145)
T COG0735 13 KEAGLRLTPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVHRLEFEG 78 (145)
T ss_pred HHcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEEEEEeCC
Confidence 3343334567778888888865446667777766221222 56777778888877666665443
No 37
>TIGR02336 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase. Members of this family are found in phylogenetically diverse bacteria, including Clostridium perfringens (in the Firmicutes), Bifidobacterium longum and Propionibacterium acnes (in the Actinobacteria), and Vibrio vulnificus (in the Proteobacteria), most of which occur as mammalian pathogens or commensals. The nominal activity, 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase (EC 2.4.1.211), varies somewhat from instance to instance in relative rates for closely related substrates.
Probab=48.71 E-value=14 Score=35.06 Aligned_cols=65 Identities=14% Similarity=0.195 Sum_probs=41.6
Q ss_pred HHHHHcCCCCC----HHHHHHHHHhcCCC---CCHHHHHHHHHhcCCeEEecCCCCcC-C--hHHHHHHHHHcCCCEE
Q 046751 34 RAMVEAGHVEN----LKHAFADISMMGDM---HTPQVVVELIHRTSGLAVLAHPWALK-N--PAAIIRKLKDVGLHRL 101 (155)
Q Consensus 34 ~~Lv~~g~~~~----~~~af~~~~~l~~g---~~~~e~I~~I~~aGGv~VlAHP~~~~-~--~~~~l~~l~~~GldGI 101 (155)
+.+|+.||..+ ....|++|++|-+. --..+.++++|++|=-+.+- ..+ + .+...+.++..||||+
T Consensus 258 Ed~vd~GyyN~~~rvPsk~~~D~~~F~~~fV~~~ak~lvd~~H~~GkeAmmF---lgD~WIGtEPy~~~F~~iGlDav 332 (719)
T TIGR02336 258 EDFVDAGYYNSTWRVPRKQYRDWIDFLSGFVRENAKELVDMSHAAGKEAMMF---LGDQWIGTEPYKDGFDEIGLDAV 332 (719)
T ss_pred HHhhccccccCcccCCcHHHhHHHHHHHHHHHHHHHHHHHHHHhcCceEEEe---ccCceeccccchhhhhhcCcceE
Confidence 34555665544 13456666443333 34678999999999877762 212 1 3467788999999998
No 38
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=48.45 E-value=41 Score=26.24 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=22.8
Q ss_pred HHHHHHHhcCCeEEecCCCCcCChHHHHHHHHHcCCCEEEEecC
Q 046751 63 VVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVYRS 106 (155)
Q Consensus 63 e~I~~I~~aGGv~VlAHP~~~~~~~~~l~~l~~~GldGIEv~~~ 106 (155)
+.|+.+|++| +.|.+ |..+ ..+.+..+.++|+|||-.-+|
T Consensus 190 ~~v~~~~~~g-~~v~~--wTvn-~~~~~~~~~~~gVdgiiTD~p 229 (229)
T cd08562 190 EQVKALKDAG-YKLLV--YTVN-DPARAAELLEWGVDAIFTDRP 229 (229)
T ss_pred HHHHHHHHCC-CEEEE--EeCC-CHHHHHHHHHCCCCEEEcCCC
Confidence 4555555553 44443 2222 245677788888888865443
No 39
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=46.89 E-value=43 Score=26.25 Aligned_cols=42 Identities=10% Similarity=0.169 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCCeEEecCCCCcCChHHHHHHHHHcCCCEEEEecC
Q 046751 61 PQVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVYRS 106 (155)
Q Consensus 61 ~~e~I~~I~~aGGv~VlAHP~~~~~~~~~l~~l~~~GldGIEv~~~ 106 (155)
..+.++.+|++ |+.|.+.-. +. .+.+..+.+.|+|||..-+|
T Consensus 179 ~~~~v~~~~~~-G~~v~~wtv--n~-~~~~~~~~~~Gvd~i~TD~P 220 (220)
T cd08579 179 NKEFIRQAHQN-GKKVYVWTV--ND-PDDMQRYLAMGVDGIITDYP 220 (220)
T ss_pred CHHHHHHHHHC-CCEEEEEcC--CC-HHHHHHHHHcCCCEEeCCCC
Confidence 34678999986 477766532 33 56678889999999976543
No 40
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=46.27 E-value=45 Score=24.76 Aligned_cols=38 Identities=21% Similarity=0.311 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCeEEecCCCCcCChHHHHHHHHHcCCCEEEE
Q 046751 62 QVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEV 103 (155)
Q Consensus 62 ~e~I~~I~~aGGv~VlAHP~~~~~~~~~l~~l~~~GldGIEv 103 (155)
.+.++.+|+. |+.|.+... +. .+.+..+...|+|||..
T Consensus 150 ~~~i~~~~~~-g~~v~~wtv--n~-~~~~~~~~~~GVdgI~T 187 (189)
T cd08556 150 PELVRAAHAA-GLKVYVWTV--ND-PEDARRLLALGVDGIIT 187 (189)
T ss_pred HHHHHHHHHc-CCEEEEEcC--CC-HHHHHHHHHCCCCEEec
Confidence 5678899985 688877543 33 56778888999999854
No 41
>PRK08569 rpl18p 50S ribosomal protein L18P; Reviewed
Probab=45.53 E-value=36 Score=27.40 Aligned_cols=57 Identities=11% Similarity=0.043 Sum_probs=34.7
Q ss_pred HHHhCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCHHHHH
Q 046751 4 KLNKLKLPLKWENVAKIAGKGVAPGRLHVARAMVEAGHVENLKHAFADISMMGDMHTPQVVV 65 (155)
Q Consensus 4 ~L~~~G~~I~~e~v~~~a~~~~~i~r~Hia~~Lv~~g~~~~~~~af~~~~~l~~g~~~~e~I 65 (155)
-.++.|+.+.-.+ +..++...+-..|||+++-...-.+ .+.-|.+| +..|+++++.-
T Consensus 122 gArd~GL~fPh~~--~~~p~~~ri~G~Hia~y~~~l~~e~-y~~~Fs~y--~~~g~~~~~l~ 178 (193)
T PRK08569 122 GAIDAGLEIPHGE--EVLPDEDRIRGEHIAEYAESLKEEN-YKKQFSKY--LERGLDPEDLP 178 (193)
T ss_pred HHHHcCCcCCCCC--CcCCCccccccchHHHHHHHHhhhH-HHHHHHHH--HhcCCCHHHHH
Confidence 3455677766543 2233323577889999866522222 67779999 88886655543
No 42
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=45.52 E-value=46 Score=26.26 Aligned_cols=41 Identities=27% Similarity=0.536 Sum_probs=24.2
Q ss_pred HHHHHHHHhcCCeEEecCCCCcCChHHHHHHHHHcCCCEEEEecC
Q 046751 62 QVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVYRS 106 (155)
Q Consensus 62 ~e~I~~I~~aGGv~VlAHP~~~~~~~~~l~~l~~~GldGIEv~~~ 106 (155)
++.++.+|++ |+.|.+ |.. +..+.+..+.+.|+|||..-+|
T Consensus 190 ~~~i~~~~~~-g~~v~~--Wtv-n~~~~~~~~~~~GVdgi~TD~P 230 (230)
T cd08563 190 EEVVEELKKR-GIPVRL--WTV-NEEEDMKRLKDLGVDGIITNYP 230 (230)
T ss_pred HHHHHHHHHC-CCEEEE--Eec-CCHHHHHHHHHCCCCEEeCCCC
Confidence 3455666655 344442 222 2356678888889999876543
No 43
>PRK09989 hypothetical protein; Provisional
Probab=45.48 E-value=29 Score=27.83 Aligned_cols=19 Identities=11% Similarity=0.170 Sum_probs=11.0
Q ss_pred HHHHHHHHHcCCCEEEEec
Q 046751 87 AAIIRKLKDVGLHRLEVYR 105 (155)
Q Consensus 87 ~~~l~~l~~~GldGIEv~~ 105 (155)
.+.++.+++.|+||||...
T Consensus 18 ~~~l~~~~~~Gfd~VEl~~ 36 (258)
T PRK09989 18 IERFAAARKAGFDAVEFLF 36 (258)
T ss_pred HHHHHHHHHcCCCEEEECC
Confidence 3455556666666666543
No 44
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=45.06 E-value=11 Score=24.70 Aligned_cols=39 Identities=13% Similarity=0.148 Sum_probs=18.8
Q ss_pred HHHhCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHcCCC
Q 046751 4 KLNKLKLPLKWENVAKIAGKGVAPGRLHVARAMVEAGHV 42 (155)
Q Consensus 4 ~L~~~G~~I~~e~v~~~a~~~~~i~r~Hia~~Lv~~g~~ 42 (155)
.+.+.|++-+..|+.+..+-..+-+=.+..++|.++||.
T Consensus 18 ~~~~~G~~Pt~rEIa~~~g~~S~~tv~~~L~~Le~kG~I 56 (65)
T PF01726_consen 18 YIEENGYPPTVREIAEALGLKSTSTVQRHLKALERKGYI 56 (65)
T ss_dssp HHHHHSS---HHHHHHHHTSSSHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHHHHHhCCCChHHHHHHHHHHHHCcCc
Confidence 344567777777776665422111223345566667765
No 45
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=45.03 E-value=24 Score=19.89 Aligned_cols=17 Identities=29% Similarity=0.433 Sum_probs=13.3
Q ss_pred HHHHHHHHHcCCCEEEE
Q 046751 87 AAIIRKLKDVGLHRLEV 103 (155)
Q Consensus 87 ~~~l~~l~~~GldGIEv 103 (155)
.+.++++.+.|+|||=.
T Consensus 10 ~~~~~~~l~~GVDgI~T 26 (30)
T PF13653_consen 10 PASWRELLDLGVDGIMT 26 (30)
T ss_dssp HHHHHHHHHHT-SEEEE
T ss_pred HHHHHHHHHcCCCEeeC
Confidence 56789999999999944
No 46
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=44.87 E-value=62 Score=26.50 Aligned_cols=35 Identities=14% Similarity=0.231 Sum_probs=21.1
Q ss_pred HHHHHHhcCCeEEecCCCCcCChHHHHHHHHHcCCCEE
Q 046751 64 VVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRL 101 (155)
Q Consensus 64 ~I~~I~~aGGv~VlAHP~~~~~~~~~l~~l~~~GldGI 101 (155)
-+++|.++||++|+--+.. .. .+.++++.+ .+|||
T Consensus 31 y~~~i~~aGg~pv~lp~~~-~~-~~~~~~~l~-~~DGl 65 (254)
T PRK11366 31 YLNAIIHAGGLPIALPHAL-AE-PSLLEQLLP-KLDGI 65 (254)
T ss_pred HHHHHHHCCCEEEEecCCC-CC-HHHHHHHHH-hCCEE
Confidence 3688889999988763321 11 234444443 37887
No 47
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=44.78 E-value=57 Score=26.00 Aligned_cols=42 Identities=19% Similarity=0.315 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCCeEEecCCCCcCChHHHHHHHHHcCCCEEEEecCC
Q 046751 62 QVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVYRSD 107 (155)
Q Consensus 62 ~e~I~~I~~aGGv~VlAHP~~~~~~~~~l~~l~~~GldGIEv~~~~ 107 (155)
.+.++.+|++| +.|.+.- .+. .+.+..+.+.|+|||.+-+|.
T Consensus 221 ~~~i~~~~~~G-~~v~vwt--vn~-~~~~~~~~~~Gvdgi~TD~P~ 262 (263)
T cd08567 221 KELVDEAHALG-LKVVPWT--VND-PEDMARLIDLGVDGIITDYPD 262 (263)
T ss_pred HHHHHHHHHCC-CEEEEec--CCC-HHHHHHHHHcCCCEEEcCCCC
Confidence 35666666665 4444432 222 456678888899998876653
No 48
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=43.82 E-value=11 Score=32.54 Aligned_cols=26 Identities=12% Similarity=-0.132 Sum_probs=20.1
Q ss_pred CCEEEEecCCCCcc---cccceeeecCCC
Q 046751 98 LHRLEVYRSDGKLV---GVIFTLQDGSHY 123 (155)
Q Consensus 98 ldGIEv~~~~~~~~---~~~L~~tgGSD~ 123 (155)
-++.|.+||-|+-+ .|+.++|||||-
T Consensus 226 ~~~~~~~yPVNai~Fhp~~~tfaTgGsDG 254 (323)
T KOG1036|consen 226 EKDTEIIYPVNAIAFHPIHGTFATGGSDG 254 (323)
T ss_pred cCCceEEEEeceeEeccccceEEecCCCc
Confidence 46777777776653 689999999995
No 49
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=43.34 E-value=49 Score=27.87 Aligned_cols=57 Identities=18% Similarity=0.216 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHhcC----CeE----EecCCCCcCChHHHHHHHHHcCCCEEEE
Q 046751 45 LKHAFADISMMGDMHTPQVVVELIHRTS----GLA----VLAHPWALKNPAAIIRKLKDVGLHRLEV 103 (155)
Q Consensus 45 ~~~af~~~~~l~~g~~~~e~I~~I~~aG----Gv~----VlAHP~~~~~~~~~l~~l~~~GldGIEv 103 (155)
++.+-.+= |..|.+++++.+++++.. .++ ..+.|-.....+..++++++.|+||+=+
T Consensus 64 Iq~A~~rA--L~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGliv 128 (265)
T COG0159 64 IQAAHLRA--LAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLV 128 (265)
T ss_pred HHHHHHHH--HHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEe
Confidence 45566666 777777777666665544 222 2233321112456778888889999844
No 50
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=40.96 E-value=57 Score=26.87 Aligned_cols=53 Identities=19% Similarity=0.249 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHhcC----CeEEecCCCCcCCh------HHHHHHHHHcCCCEE
Q 046751 45 LKHAFADISMMGDMHTPQVVVELIHRTS----GLAVLAHPWALKNP------AAIIRKLKDVGLHRL 101 (155)
Q Consensus 45 ~~~af~~~~~l~~g~~~~e~I~~I~~aG----Gv~VlAHP~~~~~~------~~~l~~l~~~GldGI 101 (155)
++++..+- |.+|.+++++.+.+++.- .+++. | ..|.+. ++.++++++.|+||+
T Consensus 57 Iq~a~~~a--l~~G~~~~~~~~~v~~ir~~~~~~plv-~-m~Y~Npi~~~G~e~f~~~~~~aGvdgv 119 (256)
T TIGR00262 57 IQAADLRA--LRAGMTPEKCFELLKKVRQKHPNIPIG-L-LTYYNLIFRKGVEEFYAKCKEVGVDGV 119 (256)
T ss_pred HHHHHHHH--HHcCCCHHHHHHHHHHHHhcCCCCCEE-E-EEeccHHhhhhHHHHHHHHHHcCCCEE
No 51
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=39.80 E-value=57 Score=24.84 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCCeEEecCCCCcCChHHHHHHHHHcCCCEEE
Q 046751 61 PQVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLE 102 (155)
Q Consensus 61 ~~e~I~~I~~aGGv~VlAHP~~~~~~~~~l~~l~~~GldGIE 102 (155)
.++.|+.+|++ |+.|.+.+. +...+.+..+.+.|+|||-
T Consensus 138 ~~~~v~~~~~~-g~~v~~wtv--n~~~~~~~~l~~~Gvd~i~ 176 (179)
T cd08555 138 DTELIASANKL-GLLSRIWTV--NDNNEIINKFLNLGVDGLI 176 (179)
T ss_pred CHHHHHHHHHC-CCEEEEEee--CChHHHHHHHHHcCCCEEe
Confidence 46788999986 567776554 2215677889999999984
No 52
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=39.56 E-value=83 Score=25.53 Aligned_cols=45 Identities=11% Similarity=0.140 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCCeEEecC-CCCcCChHHHHHHHHHcCCCEEEEecC
Q 046751 61 PQVVVELIHRTSGLAVLAH-PWALKNPAAIIRKLKDVGLHRLEVYRS 106 (155)
Q Consensus 61 ~~e~I~~I~~aGGv~VlAH-P~~~~~~~~~l~~l~~~GldGIEv~~~ 106 (155)
.++.|+.+|++| +.|.+- |....+..+.+..+.+.|+|||-.-+|
T Consensus 212 ~~~~v~~~~~~G-l~v~~wT~~~~~n~~~~~~~l~~~GvdgiiTD~p 257 (265)
T cd08564 212 TEEFVKKAHENG-LKVMTYFDEPVNDNEEDYKVYLELGVDCICPNDP 257 (265)
T ss_pred hHHHHHHHHHcC-CEEEEecCCCCCCCHHHHHHHHHcCCCEEEcCCH
Confidence 356778888885 444321 211113356777888889999876655
No 53
>PRK08508 biotin synthase; Provisional
Probab=39.16 E-value=76 Score=26.26 Aligned_cols=38 Identities=16% Similarity=0.314 Sum_probs=27.4
Q ss_pred HHHHHHHHhcC-CeEEecCCCCcCChHHHHHHHHHcCCCEE
Q 046751 62 QVVVELIHRTS-GLAVLAHPWALKNPAAIIRKLKDVGLHRL 101 (155)
Q Consensus 62 ~e~I~~I~~aG-Gv~VlAHP~~~~~~~~~l~~l~~~GldGI 101 (155)
.++++.|++.+ ++.+.+=.+.. ..+.+.+|++.|+|.+
T Consensus 78 ~ei~~~ik~~~p~l~i~~s~G~~--~~e~l~~Lk~aGld~~ 116 (279)
T PRK08508 78 AEAAKAVKKEVPGLHLIACNGTA--SVEQLKELKKAGIFSY 116 (279)
T ss_pred HHHHHHHHhhCCCcEEEecCCCC--CHHHHHHHHHcCCCEE
Confidence 47788888876 67665543332 3678899999998876
No 54
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=38.79 E-value=49 Score=27.53 Aligned_cols=46 Identities=13% Similarity=0.192 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCeEEecCCCC--------cCChHHHHHHHHHcCCCEEEEecCCCC
Q 046751 61 PQVVVELIHRTSGLAVLAHPWA--------LKNPAAIIRKLKDVGLHRLEVYRSDGK 109 (155)
Q Consensus 61 ~~e~I~~I~~aGGv~VlAHP~~--------~~~~~~~l~~l~~~GldGIEv~~~~~~ 109 (155)
+.+-|++.|++|=-+. |+. .+..+++++++++.|++.||+-.+..+
T Consensus 56 l~eki~l~~~~gV~v~---~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEiSdGti~ 109 (244)
T PF02679_consen 56 LKEKIDLAHSHGVYVY---PGGTLFEVAYQQGKFDEYLEECKELGFDAIEISDGTID 109 (244)
T ss_dssp HHHHHHHHHCTT-EEE---E-HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE--SSS-
T ss_pred HHHHHHHHHHcCCeEe---CCcHHHHHHHhcChHHHHHHHHHHcCCCEEEecCCcee
Confidence 8899999999984444 442 123468999999999999999998766
No 55
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=38.31 E-value=88 Score=27.21 Aligned_cols=24 Identities=29% Similarity=0.223 Sum_probs=18.3
Q ss_pred CCHHHHHHHHHhcCCeEE--ecCCCC
Q 046751 59 HTPQVVVELIHRTSGLAV--LAHPWA 82 (155)
Q Consensus 59 ~~~~e~I~~I~~aGGv~V--lAHP~~ 82 (155)
+.+.+.++.+|+.|+.++ |.|+++
T Consensus 78 ~~~~~l~d~vh~~Ga~i~~QL~H~Gr 103 (361)
T cd04747 78 AGWKKVVDEVHAAGGKIAPQLWHVGA 103 (361)
T ss_pred HHHHHHHHHHHhcCCEEEEeccCCCC
Confidence 556788999999998764 467664
No 56
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=38.15 E-value=81 Score=26.13 Aligned_cols=49 Identities=6% Similarity=0.029 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCCeEEecCCCC-----cCChHHHHHHHHHcCCCEEEEecCCCC
Q 046751 61 PQVVVELIHRTSGLAVLAHPWA-----LKNPAAIIRKLKDVGLHRLEVYRSDGK 109 (155)
Q Consensus 61 ~~e~I~~I~~aGGv~VlAHP~~-----~~~~~~~l~~l~~~GldGIEv~~~~~~ 109 (155)
+.+-|++.|++|=-+..-..+. ....+++++++++.|+|.||+-.+.-+
T Consensus 43 l~eki~la~~~~V~v~~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~~~ 96 (237)
T TIGR03849 43 VKEKIEMYKDYGIKVYPGGTLFEIAHSKGKFDEYLNECDELGFEAVEISDGSME 96 (237)
T ss_pred HHHHHHHHHHcCCeEeCCccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcCCccC
Confidence 7788888888884444322110 012357888999999999999998655
No 57
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=37.51 E-value=95 Score=25.71 Aligned_cols=48 Identities=8% Similarity=-0.011 Sum_probs=22.7
Q ss_pred CHHHHHHHHHhcCCeEEecCCCCc-CChHHHHHHHHHcCCCEEEEecCCC
Q 046751 60 TPQVVVELIHRTSGLAVLAHPWAL-KNPAAIIRKLKDVGLHRLEVYRSDG 108 (155)
Q Consensus 60 ~~~e~I~~I~~aGGv~VlAHP~~~-~~~~~~l~~l~~~GldGIEv~~~~~ 108 (155)
.++..++..+++|---++- |-.. ....+..+.+.+.|++=|=...|..
T Consensus 105 G~e~f~~~~~~aGvdGvii-pDLp~ee~~~~~~~~~~~gl~~I~lvap~t 153 (258)
T PRK13111 105 GVERFAADAAEAGVDGLII-PDLPPEEAEELRAAAKKHGLDLIFLVAPTT 153 (258)
T ss_pred CHHHHHHHHHHcCCcEEEE-CCCCHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 4555566666665433333 3211 1123445555566666664344444
No 58
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=36.94 E-value=97 Score=18.85 Aligned_cols=39 Identities=13% Similarity=0.282 Sum_probs=22.9
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHhcCCC--CCHHHHHHHHHhcC
Q 046751 32 VARAMVEAGHVENLKHAFADISMMGDM--HTPQVVVELIHRTS 72 (155)
Q Consensus 32 ia~~Lv~~g~~~~~~~af~~~~~l~~g--~~~~e~I~~I~~aG 72 (155)
|.....++|..+++.+++++. ...| .+.+..-++++.+|
T Consensus 8 iL~~Ak~~GlI~~~~~~l~~l--~~~g~~is~~l~~~~L~~~g 48 (48)
T PF11848_consen 8 ILLLAKRRGLISEVKPLLDRL--QQAGFRISPKLIEEILRRAG 48 (48)
T ss_pred HHHHHHHcCChhhHHHHHHHH--HHcCcccCHHHHHHHHHHcC
Confidence 444556677777777777666 5555 55554444444443
No 59
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=35.68 E-value=1.2e+02 Score=25.76 Aligned_cols=47 Identities=17% Similarity=0.238 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHhcCCeEEecCCCC-cCChHHHHHHHHHcCCCEEEEecC
Q 046751 59 HTPQVVVELIHRTSGLAVLAHPWA-LKNPAAIIRKLKDVGLHRLEVYRS 106 (155)
Q Consensus 59 ~~~~e~I~~I~~aGGv~VlAHP~~-~~~~~~~l~~l~~~GldGIEv~~~ 106 (155)
-.+.|.+..+++.|-+||.----. ...+.+ ..-+...|.||+=|=++
T Consensus 192 ~~p~elv~~~~~~grLPVvnFAAGGvATPAD-AALMM~LGadGVFVGSG 239 (296)
T COG0214 192 QAPYELVKEVAKLGRLPVVNFAAGGVATPAD-AALMMQLGADGVFVGSG 239 (296)
T ss_pred CChHHHHHHHHHhCCCCeEeecccCcCChhH-HHHHHHhCCCeEEeccc
Confidence 467789999999999988742211 001111 12356789999876444
No 60
>PRK15108 biotin synthase; Provisional
Probab=35.22 E-value=1.2e+02 Score=26.06 Aligned_cols=37 Identities=16% Similarity=0.212 Sum_probs=24.9
Q ss_pred HHHHHHHHhcCCeEEecCCCCcCChHHHHHHHHHcCCCEE
Q 046751 62 QVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRL 101 (155)
Q Consensus 62 ~e~I~~I~~aGGv~VlAHP~~~~~~~~~l~~l~~~GldGI 101 (155)
.++++.|++.| +.+.++.+.. ..+.+++|++.|+|++
T Consensus 114 ~~~i~~ik~~~-i~v~~s~G~l--s~e~l~~LkeAGld~~ 150 (345)
T PRK15108 114 EQMVQGVKAMG-LETCMTLGTL--SESQAQRLANAGLDYY 150 (345)
T ss_pred HHHHHHHHhCC-CEEEEeCCcC--CHHHHHHHHHcCCCEE
Confidence 46677777654 5555665532 3678888889998864
No 61
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=35.12 E-value=99 Score=25.24 Aligned_cols=49 Identities=8% Similarity=0.121 Sum_probs=36.7
Q ss_pred CHHHHHHHHHhcCCeEEecCCCCcCChHHHHHHHHHcCCCEEEEecCCCC
Q 046751 60 TPQVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVYRSDGK 109 (155)
Q Consensus 60 ~~~e~I~~I~~aGGv~VlAHP~~~~~~~~~l~~l~~~GldGIEv~~~~~~ 109 (155)
+..+.....++.+=++|+.++-- .....+..-+++.|++.||+=++...
T Consensus 2 ~~~~~~~~l~~~~vI~Vlr~~~~-e~a~~~a~Ali~gGi~~IEITl~sp~ 50 (211)
T COG0800 2 MKMKILSKLKAQPVVPVIRGDDV-EEALPLAKALIEGGIPAIEITLRTPA 50 (211)
T ss_pred chhHHHHHHHHCCeeEEEEeCCH-HHHHHHHHHHHHcCCCeEEEecCCCC
Confidence 34567888999999999987632 12235677888999999999876554
No 62
>PRK15447 putative protease; Provisional
Probab=34.67 E-value=96 Score=26.06 Aligned_cols=49 Identities=14% Similarity=0.048 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHhcCCeEEecCCCCc--CChHHHHHHHHHcCCCEEEEecCC
Q 046751 59 HTPQVVVELIHRTSGLAVLAHPWAL--KNPAAIIRKLKDVGLHRLEVYRSD 107 (155)
Q Consensus 59 ~~~~e~I~~I~~aGGv~VlAHP~~~--~~~~~~l~~l~~~GldGIEv~~~~ 107 (155)
-++.++++.+|++|--+++|=|... ....+.+.++++.|.|+|.|-+..
T Consensus 48 ~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~~~~~v~v~d~g 98 (301)
T PRK15447 48 GDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVENGEFLVEANDLG 98 (301)
T ss_pred HHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhcCCCEEEEeCHH
Confidence 4567899999999999999888743 222345677788899999987765
No 63
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=34.50 E-value=81 Score=25.32 Aligned_cols=41 Identities=22% Similarity=0.256 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCCeEEecCCCCcCChHHHHHHHHHcCCCEEEEecC
Q 046751 62 QVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVYRS 106 (155)
Q Consensus 62 ~e~I~~I~~aGGv~VlAHP~~~~~~~~~l~~l~~~GldGIEv~~~ 106 (155)
.+.++.+|++| +.|.+. ..+ ..+.+..+++.|+|||-.-+|
T Consensus 208 ~~~v~~~~~~g-~~v~~w--Tvn-~~~~~~~l~~~Gvd~IiTD~p 248 (256)
T cd08601 208 PWMVHLIHKKG-LLVHPY--TVN-EKADMIRLINWGVDGMFTNYP 248 (256)
T ss_pred HHHHHHHHHCC-CEEEEE--ecC-CHHHHHHHHhcCCCEEEeCCH
Confidence 35566666664 444432 222 246677888889999876665
No 64
>PF09508 Lact_bio_phlase: Lacto-N-biose phosphorylase; InterPro: IPR012711 The gene which codes for this protein in gut-bacteria is located in a novel putative operon for galactose metabolism. The protein appears to be a carbohydrate-processing phosphorolytic enzyme (2.4.1.211 from EC), unlike either glycoside hydrolases or glycoside lyase. Intestinal colonisation by Bifidobacteria is important for human health, especially in paediatrics, because colonisation seems to prevent infection by some pathogenic bacteria that cause diarrhoea or other illnesses. The operon seems to be involved in intestinal colonisation by Bifidobacteria mediated by metabolism of mucin sugars. In addition, it may also resolve the question of the nature of the bifidus factor in human milk as the lacto-N-biose structure found in milk oligosaccharides. ; GO: 0016758 transferase activity, transferring hexosyl groups; PDB: 2ZUW_A 2ZUU_C 2ZUT_D 2ZUV_A 2ZUS_B.
Probab=33.97 E-value=14 Score=35.06 Aligned_cols=65 Identities=14% Similarity=0.233 Sum_probs=34.7
Q ss_pred HHHHHcCCCCC----HHHHHHHHHhcCCC---CCHHHHHHHHHhcCCeEEecCCCCcC---ChHHHHHHHHHcCCCEE
Q 046751 34 RAMVEAGHVEN----LKHAFADISMMGDM---HTPQVVVELIHRTSGLAVLAHPWALK---NPAAIIRKLKDVGLHRL 101 (155)
Q Consensus 34 ~~Lv~~g~~~~----~~~af~~~~~l~~g---~~~~e~I~~I~~aGGv~VlAHP~~~~---~~~~~l~~l~~~GldGI 101 (155)
+.+++.||..+ ....|++|++|.+. --..+.|+++|++|=-|.+- ..+ ..+...+++...||||+
T Consensus 255 Edfid~GyyNstfrvPsk~~~D~~~F~~~fV~~~akelVDivH~~GKeAmMF---lGD~WIGtEPyg~~F~~iGlDaV 329 (716)
T PF09508_consen 255 EDFIDQGYYNSTFRVPSKEFRDWMDFQQRFVAEFAKELVDIVHEYGKEAMMF---LGDHWIGTEPYGKYFKSIGLDAV 329 (716)
T ss_dssp HHHHGGGTTT-TTS---HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEEEE---SSSSBTTT-TTSTTGGGG---EE
T ss_pred HHhhccccccCcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEe---cCCceeecccchhhhhhcCcceE
Confidence 34555555543 23456666433222 34678999999999887762 211 12455667788888887
No 65
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=33.84 E-value=61 Score=26.29 Aligned_cols=37 Identities=8% Similarity=0.128 Sum_probs=23.7
Q ss_pred HHHHHHHHhcCCeEEecCCCCcCChHHHHHHHHHcCCCEEE
Q 046751 62 QVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLE 102 (155)
Q Consensus 62 ~e~I~~I~~aGGv~VlAHP~~~~~~~~~l~~l~~~GldGIE 102 (155)
++.|+.+|++| +.|. +|..+. .+.+..+.++|+|||.
T Consensus 213 ~~~v~~~~~~g-~~v~--~WTVn~-~~~~~~l~~~GVdgIi 249 (252)
T cd08574 213 AQEIREYSKAN-ISVN--LYVVNE-PWLYSLLWCSGVQSVT 249 (252)
T ss_pred HHHHHHHHHCC-CEEE--EEccCC-HHHHHHHHHcCCCEEe
Confidence 45667777764 4444 344333 4667788889999985
No 66
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=32.57 E-value=67 Score=26.78 Aligned_cols=43 Identities=9% Similarity=0.255 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCeEEecCCCCcCChHHHHHHHHHcCCCEEEEecCC
Q 046751 61 PQVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVYRSD 107 (155)
Q Consensus 61 ~~e~I~~I~~aGGv~VlAHP~~~~~~~~~l~~l~~~GldGIEv~~~~ 107 (155)
.++.|+.+|++| +.|. +|..+. .+.+..+.+.|+|||-.-+|.
T Consensus 250 ~~~~v~~~~~~G-~~v~--vWTVNd-~~~~~~l~~~GVdgIiTD~P~ 292 (300)
T cd08612 250 RPSLFRHLQKRG-IQVY--GWVLND-EEEFERAFELGADGVMTDYPT 292 (300)
T ss_pred CHHHHHHHHHCC-CEEE--EeecCC-HHHHHHHHhcCCCEEEeCCHH
Confidence 456788888886 4343 444433 567889999999999877663
No 67
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=31.95 E-value=2e+02 Score=26.19 Aligned_cols=86 Identities=7% Similarity=0.201 Sum_probs=50.9
Q ss_pred CHHHHHHHhCCCCCCCHHHHHHHHHH-------cCCCCCHHHHH-HHHHhcCCC-------------CCHHHHHHHHHhc
Q 046751 13 KWENVAKIAGKGVAPGRLHVARAMVE-------AGHVENLKHAF-ADISMMGDM-------------HTPQVVVELIHRT 71 (155)
Q Consensus 13 ~~e~v~~~a~~~~~i~r~Hia~~Lv~-------~g~~~~~~~af-~~~~~l~~g-------------~~~~e~I~~I~~a 71 (155)
.|+.+.+... .+.+.- .+.|++ +.|.+++-+.| .+. ..+| ..++.+++.+++.
T Consensus 64 PWeRLr~lk~---~~~nT~-LQMLlRGQNlvGYrhyaDDvVe~Fv~ka--~~nGidvfRiFDAlND~RNl~~ai~a~kk~ 137 (472)
T COG5016 64 PWERLRELKK---AVPNTK-LQMLLRGQNLVGYRHYADDVVEKFVEKA--AENGIDVFRIFDALNDVRNLKTAIKAAKKH 137 (472)
T ss_pred HHHHHHHHHH---hCCCcH-HHHHHccCccccccCCchHHHHHHHHHH--HhcCCcEEEechhccchhHHHHHHHHHHhc
Confidence 5777654432 122222 667776 23455555544 333 3444 5788999999999
Q ss_pred CCeEEecCCCCcC------ChHHHHHHHHHcCCCEEEEec
Q 046751 72 SGLAVLAHPWALK------NPAAIIRKLKDVGLHRLEVYR 105 (155)
Q Consensus 72 GGv~VlAHP~~~~------~~~~~l~~l~~~GldGIEv~~ 105 (155)
|+-+-.+=-+... ...++.+++.++|+|-| |+-
T Consensus 138 G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g~DSI-ciK 176 (472)
T COG5016 138 GAHVQGTISYTTSPVHTLEYYVELAKELLEMGVDSI-CIK 176 (472)
T ss_pred CceeEEEEEeccCCcccHHHHHHHHHHHHHcCCCEE-Eee
Confidence 9865554322211 12467888899999888 544
No 68
>PLN02417 dihydrodipicolinate synthase
Probab=31.56 E-value=2.1e+02 Score=23.53 Aligned_cols=38 Identities=11% Similarity=0.002 Sum_probs=19.6
Q ss_pred CCeEEecCCCCcCC--hHHHHHHHHHcCCCEEEEecCCCC
Q 046751 72 SGLAVLAHPWALKN--PAAIIRKLKDVGLHRLEVYRSDGK 109 (155)
Q Consensus 72 GGv~VlAHP~~~~~--~~~~l~~l~~~GldGIEv~~~~~~ 109 (155)
|.++|+++-....- .-++.+...+.|.||+=+..|++.
T Consensus 69 ~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P~y~ 108 (280)
T PLN02417 69 GKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYG 108 (280)
T ss_pred CCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCCccC
Confidence 44666666553221 122334444667777766666443
No 69
>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.
Probab=31.51 E-value=61 Score=26.45 Aligned_cols=43 Identities=12% Similarity=0.230 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCCeEEecCCCCcCChHHHHHHHHHcCCCEEEEecCC
Q 046751 61 PQVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVYRSD 107 (155)
Q Consensus 61 ~~e~I~~I~~aGGv~VlAHP~~~~~~~~~l~~l~~~GldGIEv~~~~ 107 (155)
.++.|+.+|++| +.|. +|..+. .+.++.+.+.|+|||-.-+|.
T Consensus 220 ~~~~v~~~~~~G-~~v~--vWTVNd-~~~~~~l~~~GVdgIiTD~P~ 262 (264)
T cd08575 220 WPNLFDHLRKRG-IQVY--LWVLND-EEDFEEAFDLGADGVMTDSPT 262 (264)
T ss_pred CHHHHHHHHhcC-CcEE--EEEECC-HHHHHHHHhcCCCEEEeCCcc
Confidence 356888888875 5554 354433 567889999999999876663
No 70
>COG0200 RplO Ribosomal protein L15 [Translation, ribosomal structure and biogenesis]
Probab=30.72 E-value=46 Score=25.72 Aligned_cols=60 Identities=18% Similarity=0.308 Sum_probs=39.1
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC-C-----------CHHHHHHHHHhcCCeEEec
Q 046751 12 LKWENVAKIAGKGVAPGRLHVARAMVEAGHVENLKHAFADISMMGDM-H-----------TPQVVVELIHRTSGLAVLA 78 (155)
Q Consensus 12 I~~e~v~~~a~~~~~i~r~Hia~~Lv~~g~~~~~~~af~~~~~l~~g-~-----------~~~e~I~~I~~aGGv~VlA 78 (155)
|+..++.........++ ...|.+.+++.+..+. .+. |++| + ...-|++.|.++||-+.+.
T Consensus 80 vn~~~l~~~~~~~~~v~----~~~l~~~~~i~~~~~~-vKv--Lg~G~l~~~~~~~v~a~~S~~A~ekIe~aGG~v~~~ 151 (152)
T COG0200 80 VNLGKLAELLPEGEEVT----LASLKAAGVIRKLKDL-VKV--LGNGKLTKAVPVKVKAKASKSAIEKIEAAGGKVELI 151 (152)
T ss_pred EEHHHhhhhcccccccc----HHHHhhCCeEeccccc-cEE--eccCeeccceeEEEEeeeCHHHHHHHHHcCCEEEec
Confidence 45555555543332344 3467778888776554 677 7888 2 2357999999999987764
No 71
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=30.67 E-value=2.3e+02 Score=23.45 Aligned_cols=51 Identities=14% Similarity=0.107 Sum_probs=32.6
Q ss_pred CCHHHHHHHHH----h-cCCeEEecCCCCcCC--hHHHHHHHHHcCCCEEEEecCCCCc
Q 046751 59 HTPQVVVELIH----R-TSGLAVLAHPWALKN--PAAIIRKLKDVGLHRLEVYRSDGKL 110 (155)
Q Consensus 59 ~~~~e~I~~I~----~-aGGv~VlAHP~~~~~--~~~~l~~l~~~GldGIEv~~~~~~~ 110 (155)
+|.+|-.++++ . .|.++|+||-.. .. .-++.+...+.|.||+-+..|.+..
T Consensus 50 Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~~pP~y~~ 107 (289)
T cd00951 50 LTPDEYAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAAEKAGADGILLLPPYLTE 107 (289)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCCCC
Confidence 56555444433 2 466899998763 21 1245566668999999998887653
No 72
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=30.52 E-value=67 Score=26.28 Aligned_cols=38 Identities=21% Similarity=0.380 Sum_probs=22.5
Q ss_pred HHHHHHHhcCCeEEecCCCCc-CChHHHHHHHHHcCCCEEEE
Q 046751 63 VVVELIHRTSGLAVLAHPWAL-KNPAAIIRKLKDVGLHRLEV 103 (155)
Q Consensus 63 e~I~~I~~aGGv~VlAHP~~~-~~~~~~l~~l~~~GldGIEv 103 (155)
+.++.+|++| +.|. +|.. .+..+.+..+.++|+|||-.
T Consensus 241 ~~v~~~~~~G-l~v~--vWTv~~n~~~~~~~l~~~GVdgIiT 279 (282)
T cd08605 241 TAVSLVKASG-LELG--TYGKLNNDAEAVERQADLGVDGVIV 279 (282)
T ss_pred HHHHHHHHcC-cEEE--EeCCCCCCHHHHHHHHHcCCCEEEe
Confidence 4566666654 4343 3432 12346677788888888854
No 73
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=30.29 E-value=1.1e+02 Score=24.72 Aligned_cols=48 Identities=17% Similarity=0.174 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcCCeEEecCCCCcCChHHHHHHHHHcCCCEEEEecCCCC
Q 046751 61 PQVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVYRSDGK 109 (155)
Q Consensus 61 ~~e~I~~I~~aGGv~VlAHP~~~~~~~~~l~~l~~~GldGIEv~~~~~~ 109 (155)
..+..+.+.+.+=++|+-.+.. ....+..+.+.+.|++-||+=.....
T Consensus 5 ~~~~~~~l~~~~~iaV~r~~~~-~~a~~i~~al~~~Gi~~iEitl~~~~ 52 (212)
T PRK05718 5 KTSIEEILRAGPVVPVIVINKL-EDAVPLAKALVAGGLPVLEVTLRTPA 52 (212)
T ss_pred HHHHHHHHHHCCEEEEEEcCCH-HHHHHHHHHHHHcCCCEEEEecCCcc
Confidence 4466788899999999976532 12245777888899999999865544
No 74
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=30.02 E-value=2.8e+02 Score=22.85 Aligned_cols=52 Identities=4% Similarity=0.082 Sum_probs=32.2
Q ss_pred CCHHHHHHHHH----h-cCCeEEecCCCCcCC--hHHHHHHHHHcCCCEEEEecCCCCc
Q 046751 59 HTPQVVVELIH----R-TSGLAVLAHPWALKN--PAAIIRKLKDVGLHRLEVYRSDGKL 110 (155)
Q Consensus 59 ~~~~e~I~~I~----~-aGGv~VlAHP~~~~~--~~~~l~~l~~~GldGIEv~~~~~~~ 110 (155)
+|.+|-.++++ . .|.++|+|+-+.... .-++.+...+.|.||+=+..|.+.+
T Consensus 54 Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~ 112 (293)
T PRK04147 54 LSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVTPFYYP 112 (293)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcCCC
Confidence 55555443332 2 345888988764321 2245566678899999988887643
No 75
>PRK10358 putative rRNA methylase; Provisional
Probab=29.64 E-value=90 Score=23.79 Aligned_cols=26 Identities=31% Similarity=0.325 Sum_probs=13.1
Q ss_pred EecCCCCcCChHHHHHHHHHcCCCEE
Q 046751 76 VLAHPWALKNPAAIIRKLKDVGLHRL 101 (155)
Q Consensus 76 VlAHP~~~~~~~~~l~~l~~~GldGI 101 (155)
||-+|....+...+++-....|++++
T Consensus 5 vL~~~~dPgNlGti~Rta~a~G~~~v 30 (157)
T PRK10358 5 VLFEPEIPPNTGNIIRLCANTGFRLH 30 (157)
T ss_pred EEeCCCCcChHHHHHHHHHHhCCEEE
Confidence 44455443344445555555555554
No 76
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip
Probab=29.52 E-value=95 Score=24.59 Aligned_cols=41 Identities=12% Similarity=0.255 Sum_probs=24.3
Q ss_pred HHHHHHHHhcCCeEEecCCCCcCChHHHHHHHHHcCCCEEEEecC
Q 046751 62 QVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVYRS 106 (155)
Q Consensus 62 ~e~I~~I~~aGGv~VlAHP~~~~~~~~~l~~l~~~GldGIEv~~~ 106 (155)
.+.++..|+.| +.|. +|..+. .+.+..+.++|+|||-.-+|
T Consensus 194 ~~~v~~~~~~g-l~v~--~wTvn~-~~~~~~l~~~gvdgiiTD~P 234 (234)
T cd08570 194 QAFLPELKKNG-KKVF--VWTVNT-EEDMRYAIRLGVDGVITDDP 234 (234)
T ss_pred HHHHHHHHHCC-CEEE--EEecCC-HHHHHHHHHCCCCEEEeCCC
Confidence 34555555553 4443 233333 46678888899999866543
No 77
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=29.34 E-value=1e+02 Score=24.61 Aligned_cols=41 Identities=27% Similarity=0.464 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCCeEEecCCCCcCChHHHHHHHHHcCCCEEEEecC
Q 046751 62 QVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVYRS 106 (155)
Q Consensus 62 ~e~I~~I~~aGGv~VlAHP~~~~~~~~~l~~l~~~GldGIEv~~~ 106 (155)
++.++..|++| +.|.+ |..+ ..+.+..+.+.|+|||..-+|
T Consensus 202 ~~~v~~~~~~G-~~v~v--WTVN-~~~~~~~l~~~gVdgIiTD~p 242 (249)
T cd08561 202 PRFVRAAHAAG-LEVHV--WTVN-DPAEMRRLLDLGVDGIITDRP 242 (249)
T ss_pred HHHHHHHHHCC-CEEEE--EecC-CHHHHHHHHhcCCCEEEcCCH
Confidence 45667777764 44543 3333 356778888999999988766
No 78
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=29.15 E-value=1e+02 Score=24.40 Aligned_cols=40 Identities=10% Similarity=0.180 Sum_probs=23.6
Q ss_pred HHHHHHHhcCCeEEecCCCCcCChHHHHHHHHHcCCCEEEEecC
Q 046751 63 VVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVYRS 106 (155)
Q Consensus 63 e~I~~I~~aGGv~VlAHP~~~~~~~~~l~~l~~~GldGIEv~~~ 106 (155)
+.++.+|++| +.|. +|..+ ....+..+.+.|+|||..-+.
T Consensus 196 ~~v~~~~~~G-l~v~--vwTVn-~~~~~~~l~~~GVdgiiTD~~ 235 (237)
T cd08583 196 KLIEKLNKAG-IYVY--VYTIN-DLKDAQEYKKLGVYGIYTDFL 235 (237)
T ss_pred HHHHHHHHCC-CEEE--EEeCC-CHHHHHHHHHcCCCEEEeCCC
Confidence 4555555553 3333 22222 245678888899999876554
No 79
>PRK06256 biotin synthase; Validated
Probab=28.94 E-value=1.3e+02 Score=25.20 Aligned_cols=40 Identities=20% Similarity=0.216 Sum_probs=25.7
Q ss_pred HHHHHHHHhcCCeEEecCCCCcCChHHHHHHHHHcCCCEEEE
Q 046751 62 QVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEV 103 (155)
Q Consensus 62 ~e~I~~I~~aGGv~VlAHP~~~~~~~~~l~~l~~~GldGIEv 103 (155)
.++++.|++.-++.+.++.+. ...+.+..|++.|++.+-+
T Consensus 129 ~e~i~~i~~~~~i~~~~~~g~--l~~e~l~~LkeaG~~~v~~ 168 (336)
T PRK06256 129 VEAVKAIKEETDLEICACLGL--LTEEQAERLKEAGVDRYNH 168 (336)
T ss_pred HHHHHHHHhcCCCcEEecCCc--CCHHHHHHHHHhCCCEEec
Confidence 355666665555556666543 2357788888999887743
No 80
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=28.91 E-value=97 Score=25.97 Aligned_cols=61 Identities=11% Similarity=0.131 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHhcC-CeEEecCCCCcCChHHHHHHHHHcCCCEEEEecCCCCc---cccc--ceeeecCC
Q 046751 59 HTPQVVVELIHRTS-GLAVLAHPWALKNPAAIIRKLKDVGLHRLEVYRSDGKL---VGVI--FTLQDGSH 122 (155)
Q Consensus 59 ~~~~e~I~~I~~aG-Gv~VlAHP~~~~~~~~~l~~l~~~GldGIEv~~~~~~~---~~~~--L~~tgGSD 122 (155)
+...++++.+++.| |++++=|.+. . ...++.+++.|.+++-+-+...-. +.++ ..+.|+-|
T Consensus 215 P~~k~i~~~i~~~~~~~~ilh~cg~--~-~~~~~~~~~~~~~~~s~d~~~dl~e~k~~~g~~~~i~Gni~ 281 (335)
T cd00717 215 PYLKRIIEEVKKRLPGVPVILFAKG--A-GGLLEDLAQLGADVVGLDWRVDLDEARKRLGPKVALQGNLD 281 (335)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEcCC--C-HHHHHHHHhcCCCEEEeCCCCCHHHHHHHhCCCeEEEeCCC
Confidence 56788999999987 7778777663 2 478899999999998665542221 2343 56666655
No 81
>PRK00170 azoreductase; Reviewed
Probab=28.90 E-value=1.1e+02 Score=23.30 Aligned_cols=64 Identities=11% Similarity=0.064 Sum_probs=35.0
Q ss_pred CHHHHHHHHHhcCCeEEecCCCCcCChHHHHHHHHHcCCCEEEEecCC-------CCcccccceeeecCCCC
Q 046751 60 TPQVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVYRSD-------GKLVGVIFTLQDGSHYE 124 (155)
Q Consensus 60 ~~~e~I~~I~~aGGv~VlAHP~~~~~~~~~l~~l~~~GldGIEv~~~~-------~~~~~~~L~~tgGSD~H 124 (155)
+..+.++.|.++.++ |++-|-........++.+++.=+..-+.|... ...++..++.|+|+++.
T Consensus 76 ~~~~l~~~i~~AD~i-V~~sP~y~~~~pa~LK~~iDrv~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~ 146 (201)
T PRK00170 76 LSDELLEEFLAADKI-VIAAPMYNFSIPTQLKAYIDLIARAGKTFRYTENGPVGLVTGKKALLITSRGGIHK 146 (201)
T ss_pred HHHHHHHHHHHCCEE-EEeecccccCCcHHHHHHHHhheeCCceEEecCCCCccCcCCcEEEEEEeCCCCCC
Confidence 345678999999988 55668532222344455544323222233211 12246677788777643
No 82
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=28.60 E-value=31 Score=18.63 Aligned_cols=14 Identities=29% Similarity=0.306 Sum_probs=10.8
Q ss_pred HHHHHHHHcCCCCC
Q 046751 31 HVARAMVEAGHVEN 44 (155)
Q Consensus 31 Hia~~Lv~~g~~~~ 44 (155)
.|.++|++.||..+
T Consensus 6 lI~~YL~~~Gy~~t 19 (27)
T PF08513_consen 6 LIYDYLVENGYKET 19 (27)
T ss_dssp HHHHHHHHCT-HHH
T ss_pred HHHHHHHHCCcHHH
Confidence 48899999999765
No 83
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=28.47 E-value=1.2e+02 Score=25.20 Aligned_cols=55 Identities=11% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHhcC-------CeEEecCCCCcCChHHHHHHHHHcCCCEE
Q 046751 45 LKHAFADISMMGDMHTPQVVVELIHRTS-------GLAVLAHPWALKNPAAIIRKLKDVGLHRL 101 (155)
Q Consensus 45 ~~~af~~~~~l~~g~~~~e~I~~I~~aG-------Gv~VlAHP~~~~~~~~~l~~l~~~GldGI 101 (155)
++++..+- |..|.+++++.+++++.- -+..-..|......++.++++++.|+||+
T Consensus 62 Iq~a~~rA--L~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgv 123 (263)
T CHL00200 62 IQEASNRA--LKQGINLNKILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGL 123 (263)
T ss_pred HHHHHHHH--HHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEE
No 84
>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism.
Probab=27.64 E-value=87 Score=25.63 Aligned_cols=38 Identities=29% Similarity=0.402 Sum_probs=20.9
Q ss_pred HHHHHHHhcCCeEEecCCCCc-CChHHHHHHHHHcCCCEEEE
Q 046751 63 VVVELIHRTSGLAVLAHPWAL-KNPAAIIRKLKDVGLHRLEV 103 (155)
Q Consensus 63 e~I~~I~~aGGv~VlAHP~~~-~~~~~~l~~l~~~GldGIEv 103 (155)
+.++.+|++| +.|. +|.. ++..+.+..+.++|+|||-.
T Consensus 249 ~~v~~~~~~G-l~v~--~wTv~~n~~~~~~~l~~~GVdgIiT 287 (290)
T cd08607 249 SQIELAKSLG-LVVF--CWGDDLNDPENRKKLKELGVDGLIY 287 (290)
T ss_pred HHHHHHHHcC-CEEE--EECCCCCCHHHHHHHHHcCCCEEEe
Confidence 4556666654 3332 3433 12345667777888888743
No 85
>PLN02591 tryptophan synthase
Probab=27.54 E-value=1.2e+02 Score=25.14 Aligned_cols=55 Identities=16% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHhcC-------CeEEecCCCCcCChHHHHHHHHHcCCCEE
Q 046751 45 LKHAFADISMMGDMHTPQVVVELIHRTS-------GLAVLAHPWALKNPAAIIRKLKDVGLHRL 101 (155)
Q Consensus 45 ~~~af~~~~~l~~g~~~~e~I~~I~~aG-------Gv~VlAHP~~~~~~~~~l~~l~~~GldGI 101 (155)
++++..+- |.+|.+++++.+++++.. -+..-+.|......++.++++++.|+||+
T Consensus 49 Iq~a~~rA--L~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~Gv 110 (250)
T PLN02591 49 IQAAATRA--LEKGTTLDSVISMLKEVAPQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGL 110 (250)
T ss_pred HHHHHHHH--HHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEE
No 86
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=27.42 E-value=73 Score=25.97 Aligned_cols=43 Identities=19% Similarity=0.414 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHhcCC-eEEecCCCCcCChHHHHHHH-HHcCCCEE
Q 046751 59 HTPQVVVELIHRTSG-LAVLAHPWALKNPAAIIRKL-KDVGLHRL 101 (155)
Q Consensus 59 ~~~~e~I~~I~~aGG-v~VlAHP~~~~~~~~~l~~l-~~~GldGI 101 (155)
+++.+.|+.+|+.|= +++..||+....-.+.++.+ .+.|+||+
T Consensus 66 pdp~~~i~~l~~~g~~~~~~~~P~v~~w~~~~~~~~~~~~Gvdg~ 110 (265)
T cd06589 66 PNPKSMIDELHDNGVKLVLWIDPYIREWWAEVVKKLLVSLGVDGF 110 (265)
T ss_pred CCHHHHHHHHHHCCCEEEEEeChhHHHHHHHHHHHhhccCCCCEE
Confidence 899999999999874 44567787522223444444 67898886
No 87
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=26.92 E-value=1.2e+02 Score=24.55 Aligned_cols=37 Identities=11% Similarity=0.116 Sum_probs=27.9
Q ss_pred CHHHHHHHHHhcCCeE---EecCCCCcCChHHHHHHHHHcC
Q 046751 60 TPQVVVELIHRTSGLA---VLAHPWALKNPAAIIRKLKDVG 97 (155)
Q Consensus 60 ~~~e~I~~I~~aGGv~---VlAHP~~~~~~~~~l~~l~~~G 97 (155)
..++.++.+++.|-.+ +++|+++... .+.+.++++.|
T Consensus 162 ~~~~~l~~l~~~g~~~~~~vi~H~~~~~~-~~~~~~~~~~G 201 (293)
T cd00530 162 MGLEQLRILEEEGVDPSKVVIGHLDRNDD-PDYLLKIAALG 201 (293)
T ss_pred ccHHHHHHHHHcCCChhheEEeCCCCCCC-HHHHHHHHhCC
Confidence 6788999999886543 8999986443 46678888877
No 88
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=26.61 E-value=1e+02 Score=16.41 Aligned_cols=28 Identities=18% Similarity=0.201 Sum_probs=17.5
Q ss_pred HHHHHHHHHhcCCC-CCHHHHHHHHH-hcC
Q 046751 45 LKHAFADISMMGDM-HTPQVVVELIH-RTS 72 (155)
Q Consensus 45 ~~~af~~~~~l~~g-~~~~e~I~~I~-~aG 72 (155)
++.+|+.|..=++| ++.+|...+++ +.|
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 35677777322233 88888888887 444
No 89
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=26.34 E-value=3.8e+02 Score=22.43 Aligned_cols=45 Identities=16% Similarity=0.212 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHhcCCeEEecCCCCcCChHHHHHHHHHcCCCEEEE
Q 046751 59 HTPQVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEV 103 (155)
Q Consensus 59 ~~~~e~I~~I~~aGGv~VlAHP~~~~~~~~~l~~l~~~GldGIEv 103 (155)
.+-+++.+.+.+.||-+|+--+-.....+.+.+-+..+++.-.|+
T Consensus 50 TDde~I~~av~~~G~~avmT~~~h~SGTdR~~Ev~~~l~~~~~~i 94 (247)
T COG1212 50 TDDERIAEAVQAFGGEAVMTSKDHQSGTDRLAEVVEKLGLPDDEI 94 (247)
T ss_pred cCCHHHHHHHHHhCCEEEecCCCCCCccHHHHHHHHhcCCCcceE
Confidence 677889999999999999975544333345555566677775553
No 90
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=26.23 E-value=2.9e+02 Score=21.13 Aligned_cols=47 Identities=15% Similarity=0.093 Sum_probs=20.3
Q ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC---CCHHHHHHHHHhcC
Q 046751 26 APGRLHVARAMVEAGHVENLKHAFADISMMGDM---HTPQVVVELIHRTS 72 (155)
Q Consensus 26 ~i~r~Hia~~Lv~~g~~~~~~~af~~~~~l~~g---~~~~e~I~~I~~aG 72 (155)
+..|.-|+++|.+..-.-+..+.|+...+-+++ .|+...+++..+.|
T Consensus 25 T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 25 TPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 445555666665533222334444443111111 34444555444444
No 91
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=26.23 E-value=77 Score=24.82 Aligned_cols=60 Identities=17% Similarity=0.119 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHhcCCeEEecCCCCcCChHHHHHHHHHcCCCEEEEecCCCCcccccceeeecCCCCC
Q 046751 59 HTPQVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVYRSDGKLVGVIFTLQDGSHYES 125 (155)
Q Consensus 59 ~~~~e~I~~I~~aGGv~VlAHP~~~~~~~~~l~~l~~~GldGIEv~~~~~~~~~~~L~~tgGSD~H~ 125 (155)
+.+.+.++.|+++.|+ |++-|-........++.+++.- .......+...+++|||+.-|.
T Consensus 55 ~~~~~~~~~i~~AD~i-Ii~tP~Y~~s~pg~LKn~iD~l------~~~~l~~K~v~iiat~G~~~~~ 114 (191)
T PRK10569 55 PALKTFTEQLAQADGL-IVATPVYKASFSGALKTLLDLL------PERALEHKVVLPLATGGSVAHM 114 (191)
T ss_pred HHHHHHHHHHHHCCEE-EEECCccCCCCCHHHHHHHHhC------ChhhhCCCEEEEEEecCCchhH
Confidence 5788899999999998 5556853222234556555531 1111222356778888887663
No 92
>PRK15452 putative protease; Provisional
Probab=26.09 E-value=92 Score=27.97 Aligned_cols=48 Identities=8% Similarity=-0.076 Sum_probs=35.1
Q ss_pred CHHHHHHHHHhcCCeEEecCCCCcCC-----hHHHHHHHHHcCCCEEEEecCC
Q 046751 60 TPQVVVELIHRTSGLAVLAHPWALKN-----PAAIIRKLKDVGLHRLEVYRSD 107 (155)
Q Consensus 60 ~~~e~I~~I~~aGGv~VlAHP~~~~~-----~~~~l~~l~~~GldGIEv~~~~ 107 (155)
+++++++..|+.|.-..++=|..... ..+.++.+.+.|+|||=|-++.
T Consensus 47 dl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~gvDgvIV~d~G 99 (443)
T PRK15452 47 NLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPVIAMKPDALIMSDPG 99 (443)
T ss_pred HHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHHHhCCCCEEEEcCHH
Confidence 46779999999998888876643221 2345777788999999887664
No 93
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=25.34 E-value=2e+02 Score=27.39 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHhcC-CeEE--ecCCC
Q 046751 59 HTPQVVVELIHRTS-GLAV--LAHPW 81 (155)
Q Consensus 59 ~~~~e~I~~I~~aG-Gv~V--lAHP~ 81 (155)
..+.++++.||+.| +++. |.|++
T Consensus 475 ~~~~~~~~~vh~~gg~~i~~QL~h~G 500 (765)
T PRK08255 475 AAWKRIVDFVHANSDAKIGIQLGHSG 500 (765)
T ss_pred HHHHHHHHHHHhcCCceEEEEccCCc
Confidence 45677899999995 5543 45644
No 94
>COG4668 MtlA Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]
Probab=25.31 E-value=2.1e+02 Score=22.02 Aligned_cols=47 Identities=28% Similarity=0.372 Sum_probs=32.2
Q ss_pred HHHHHHHcCCCCC--HH------HHHHHHHhcCCC----CCHHHHHHHHHhcCCeEEecCCC
Q 046751 32 VARAMVEAGHVEN--LK------HAFADISMMGDM----HTPQVVVELIHRTSGLAVLAHPW 81 (155)
Q Consensus 32 ia~~Lv~~g~~~~--~~------~af~~~~~l~~g----~~~~e~I~~I~~aGGv~VlAHP~ 81 (155)
..+.|++.||+.. ++ ..-..| ||+| ..+.|+.+.+.+.|=+.+.. |-
T Consensus 24 ~g~~Lv~~G~V~~~Yl~~m~eRE~~~STy--LGngIAIPHgt~e~k~~V~kTgv~i~q~-p~ 82 (142)
T COG4668 24 AGEALVEGGYVEPGYLDAMLEREKQVSTY--LGNGIAIPHGTGEAKDLVLKTGVVIVQF-PE 82 (142)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHh--hcCceecCCCChHHHHHHHHcCeEEEEC-CC
Confidence 4677888999866 11 234577 8999 45677889999888544443 53
No 95
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=25.17 E-value=36 Score=22.35 Aligned_cols=17 Identities=18% Similarity=0.186 Sum_probs=14.1
Q ss_pred HHhcCCeEEecCCCCcC
Q 046751 68 IHRTSGLAVLAHPWALK 84 (155)
Q Consensus 68 I~~aGGv~VlAHP~~~~ 84 (155)
.-..||.++.|||-++.
T Consensus 20 Cp~CG~~t~~~~PprFS 36 (59)
T COG2260 20 CPVCGGDTKVPHPPRFS 36 (59)
T ss_pred CCCCCCccccCCCCCCC
Confidence 34689999999998764
No 96
>PRK09462 fur ferric uptake regulator; Provisional
Probab=24.90 E-value=2.6e+02 Score=20.63 Aligned_cols=13 Identities=23% Similarity=0.342 Sum_probs=6.7
Q ss_pred CCCHHHHHHHHHH
Q 046751 26 APGRLHVARAMVE 38 (155)
Q Consensus 26 ~i~r~Hia~~Lv~ 38 (155)
+..|.-|.++|.+
T Consensus 16 T~qR~~Il~~l~~ 28 (148)
T PRK09462 16 TLPRLKILEVLQE 28 (148)
T ss_pred CHHHHHHHHHHHh
Confidence 3455555555554
No 97
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=24.79 E-value=2.3e+02 Score=23.51 Aligned_cols=52 Identities=10% Similarity=0.064 Sum_probs=30.8
Q ss_pred CCHHHHHHHHH-----hcCCeEEecCCCCcCC--hHHHHHHHHHcCCCEEEEecCCCCc
Q 046751 59 HTPQVVVELIH-----RTSGLAVLAHPWALKN--PAAIIRKLKDVGLHRLEVYRSDGKL 110 (155)
Q Consensus 59 ~~~~e~I~~I~-----~aGGv~VlAHP~~~~~--~~~~l~~l~~~GldGIEv~~~~~~~ 110 (155)
+|.+|-.++++ .+|-++|+++-+.... .-++.+...+.|.||+=+..|++.+
T Consensus 51 Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P~y~~ 109 (290)
T TIGR00683 51 LSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYK 109 (290)
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCC
Confidence 55555444433 2345788887654321 2244555667888888888876554
No 98
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=24.47 E-value=2e+02 Score=24.61 Aligned_cols=46 Identities=17% Similarity=0.237 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHhcCCeEEecCCCCcCChH----HHHHHHHHcCCCEE--EEec
Q 046751 59 HTPQVVVELIHRTSGLAVLAHPWALKNPA----AIIRKLKDVGLHRL--EVYR 105 (155)
Q Consensus 59 ~~~~e~I~~I~~aGGv~VlAHP~~~~~~~----~~l~~l~~~GldGI--Ev~~ 105 (155)
+++. +|.++++--=+||++-|......+ .+-...++.|-||| ||+.
T Consensus 201 LDi~-aV~~~kq~THLPVivDpSH~~Grr~lv~pla~AA~AaGAdglmiEVHp 252 (286)
T COG2876 201 LDIS-AVPILKQETHLPVIVDPSHATGRRDLVEPLAKAAIAAGADGLMIEVHP 252 (286)
T ss_pred echH-HHHHHHhhcCCCEEECCCCcccchhhHHHHHHHHHhccCCeeEEEecC
Confidence 5554 788899999999999886433222 23334457899998 5543
No 99
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=24.24 E-value=1.9e+02 Score=23.50 Aligned_cols=36 Identities=28% Similarity=0.406 Sum_probs=23.6
Q ss_pred HHHHHHHhcCCeEEecCCCCcCChHHHHHHHHHcCCCEE
Q 046751 63 VVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRL 101 (155)
Q Consensus 63 e~I~~I~~aGGv~VlAHP~~~~~~~~~l~~l~~~GldGI 101 (155)
+..+.+++. |+.+.++++.. ..+.++.|++.|++.+
T Consensus 102 ~i~~~~~~~-~i~~~~~~g~~--~~e~l~~Lk~aG~~~v 137 (296)
T TIGR00433 102 AMVQIVEEM-GLKTCATLGLL--DPEQAKRLKDAGLDYY 137 (296)
T ss_pred HHHHHHHhC-CCeEEecCCCC--CHHHHHHHHHcCCCEE
Confidence 344444444 56777777633 3678888889998873
No 100
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.12 E-value=1.8e+02 Score=24.44 Aligned_cols=47 Identities=13% Similarity=0.260 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHhcCCeEEecCCCCcCChHHHHHHHH-HcCCCEEEEecCC
Q 046751 59 HTPQVVVELIHRTSGLAVLAHPWALKNPAAIIRKLK-DVGLHRLEVYRSD 107 (155)
Q Consensus 59 ~~~~e~I~~I~~aGGv~VlAHP~~~~~~~~~l~~l~-~~GldGIEv~~~~ 107 (155)
--++.++++.++.|-...+.||+. +.-..+..++ +.+-+|||....+
T Consensus 194 kql~~~~~~Ark~G~ai~IGh~~~--~Tv~vl~~~~~~l~~~gIelV~~s 241 (250)
T COG2861 194 KQLDAAEKLARKNGSAIGIGHPHK--NTVAVLQQWLDELPARGIELVPVS 241 (250)
T ss_pred HHHHHHHHHHHhcCceEEecCCch--hHHHHHHHHHHhCCCCCeEEecHH
Confidence 446788889999999999999963 3334444444 4566799987754
No 101
>cd08565 GDPD_pAtGDE_like Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (pAtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=23.99 E-value=1.6e+02 Score=23.59 Aligned_cols=41 Identities=24% Similarity=0.398 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCCeEEecCCCCcCChHHHHHHHHHcCCCEEEEecCC
Q 046751 62 QVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVYRSD 107 (155)
Q Consensus 62 ~e~I~~I~~aGGv~VlAHP~~~~~~~~~l~~l~~~GldGIEv~~~~ 107 (155)
.+.++.++. |+.|.+ |..+ ..+.+..+.++|+|||-.-+|.
T Consensus 192 ~~~v~~~~~--g~~v~~--WTVn-~~~~~~~l~~~GVdgIiTD~P~ 232 (235)
T cd08565 192 WELVRAAVP--GLRLGV--WTVN-DDSLIRYWLACGVRQLTTDRPD 232 (235)
T ss_pred HHHHHHHhC--CCEEEE--EccC-CHHHHHHHHHcCCCEEEeCCcc
Confidence 344555542 666653 4333 3567788999999999877664
No 102
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=23.89 E-value=1.1e+02 Score=27.58 Aligned_cols=36 Identities=25% Similarity=0.366 Sum_probs=23.7
Q ss_pred CCCCCHHHHHHHh--CCCCCCCHHHHHHHHHHcCCCCCH
Q 046751 9 KLPLKWENVAKIA--GKGVAPGRLHVARAMVEAGHVENL 45 (155)
Q Consensus 9 G~~I~~e~v~~~a--~~~~~i~r~Hia~~Lv~~g~~~~~ 45 (155)
-|.+.-|.-++.. ..+ -..||.+.++|+..|..+-+
T Consensus 382 e~k~kKEACWAisNatsg-g~~~PD~iryLv~qG~IkpL 419 (526)
T COG5064 382 EYKIKKEACWAISNATSG-GLNRPDIIRYLVSQGFIKPL 419 (526)
T ss_pred HHHHHHHHHHHHHhhhcc-ccCCchHHHHHHHccchhHH
Confidence 4445445544442 223 37999999999999987653
No 103
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=23.71 E-value=1.6e+02 Score=23.71 Aligned_cols=52 Identities=10% Similarity=0.019 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHhcCCeEEecC--CCC-cCChHHHHHHHHHcCCCEEEEecCCCCc
Q 046751 59 HTPQVVVELIHRTSGLAVLAH--PWA-LKNPAAIIRKLKDVGLHRLEVYRSDGKL 110 (155)
Q Consensus 59 ~~~~e~I~~I~~aGGv~VlAH--P~~-~~~~~~~l~~l~~~GldGIEv~~~~~~~ 110 (155)
..+++.++...++|.-.++-| |.. .....++++.+++.|++.+=+.+|..+.
T Consensus 88 ~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~ 142 (244)
T PRK13125 88 DSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPD 142 (244)
T ss_pred hCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCH
Confidence 367777888888888777777 332 1234567788888999999888886654
No 104
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=23.70 E-value=2.1e+02 Score=23.19 Aligned_cols=76 Identities=21% Similarity=0.303 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHH----cCCCCCH--HHHHHHHHhcCCC------------CCHHHHHHHHHhcCCeEEecC--CCCcCCh
Q 046751 27 PGRLHVARAMVE----AGHVENL--KHAFADISMMGDM------------HTPQVVVELIHRTSGLAVLAH--PWALKNP 86 (155)
Q Consensus 27 i~r~Hia~~Lv~----~g~~~~~--~~af~~~~~l~~g------------~~~~e~I~~I~~aGGv~VlAH--P~~~~~~ 86 (155)
-|+..||++|-+ +|+-.-+ .+-.+.- |.++ .-+.++.+++.++|-+++.|= |++ ..
T Consensus 34 sGKSTiA~ale~~L~~~G~~~y~LDGDnvR~g--L~~dLgFs~edR~eniRRvaevAkll~daG~iviva~ISP~r--~~ 109 (197)
T COG0529 34 SGKSTIANALEEKLFAKGYHVYLLDGDNVRHG--LNRDLGFSREDRIENIRRVAEVAKLLADAGLIVIVAFISPYR--ED 109 (197)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEecChhHhhc--ccCCCCCChHHHHHHHHHHHHHHHHHHHCCeEEEEEeeCccH--HH
Confidence 488889888776 4543111 1112222 3333 456778889999998877764 553 34
Q ss_pred HHHHHHHHHcCCCEEEEecCC
Q 046751 87 AAIIRKLKDVGLHRLEVYRSD 107 (155)
Q Consensus 87 ~~~l~~l~~~GldGIEv~~~~ 107 (155)
+++..++...| +=+|||-..
T Consensus 110 R~~aR~~~~~~-~FiEVyV~~ 129 (197)
T COG0529 110 RQMARELLGEG-EFIEVYVDT 129 (197)
T ss_pred HHHHHHHhCcC-ceEEEEeCC
Confidence 56777777665 789999753
No 105
>PF03009 GDPD: Glycerophosphoryl diester phosphodiesterase family; InterPro: IPR004129 Glycerophosphoryl diester phosphodiesterases display broad specificity for glycerophosphodiesters; glycerophosphocholine, glycerophosphoethanolamine, glycerophosphoglycerol, and bis(glycerophosphoglycerol) all of which are are hydrolysed by this enzyme.; GO: 0008889 glycerophosphodiester phosphodiesterase activity, 0006071 glycerol metabolic process; PDB: 3I10_A 2P76_H 2OOG_F 3KS6_D 3KS5_A 2PZ0_B 1YDY_B 1T8Q_A 1O1Z_A 3L12_B ....
Probab=23.33 E-value=1.7e+02 Score=22.42 Aligned_cols=41 Identities=17% Similarity=0.307 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCCeEEecCCCCcCChH--HHHHHHHHcCCCEEEEecC
Q 046751 62 QVVVELIHRTSGLAVLAHPWALKNPA--AIIRKLKDVGLHRLEVYRS 106 (155)
Q Consensus 62 ~e~I~~I~~aGGv~VlAHP~~~~~~~--~~l~~l~~~GldGIEv~~~ 106 (155)
.+.|+.+|++| +.|.+. ..+. . +.+..+.+.|+|||-.-+|
T Consensus 212 ~~~v~~~~~~g-~~v~~w--tvn~-~~~~~~~~l~~~gvdgIiTD~P 254 (256)
T PF03009_consen 212 PRLVQEAHKAG-LKVYVW--TVND-PDVEDMKRLLDLGVDGIITDFP 254 (256)
T ss_dssp HHHHHHHHHTT--EEEEB--SB-S-HSHHHHHHHHHHT-SEEEES-H
T ss_pred HHHHHHHHHCC-CEEEEE--ecCC-cHHHHHHHHHhCCCCEEEEcCC
Confidence 36899999998 667654 3333 4 6778889999999965443
No 106
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=23.32 E-value=68 Score=26.77 Aligned_cols=64 Identities=16% Similarity=0.103 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHhcCCeEEecCCCCcCChHHHHHHHHHcCCCEEEEecCCCCc---cc--ccceeeecCCCC
Q 046751 59 HTPQVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVYRSDGKL---VG--VIFTLQDGSHYE 124 (155)
Q Consensus 59 ~~~~e~I~~I~~aGGv~VlAHP~~~~~~~~~l~~l~~~GldGIEv~~~~~~~---~~--~~L~~tgGSD~H 124 (155)
+...+.++.||+.|+-.+.-|.... ....++.+++.|+|++.+-+...-. ++ -+..+.||=|-.
T Consensus 220 P~~k~i~~~i~~~g~~~~~lH~cG~--~~~~~~~l~~~g~d~~~~~~~~~~~~~~~~~~~~~~l~Gni~~~ 288 (343)
T PF01208_consen 220 PYLKKIIDAIKEAGKDPVILHICGN--TTPILDDLADLGADVLSVDEKVDLAEAKRKLGDKIVLMGNIDPV 288 (343)
T ss_dssp HHHHHHHHHHHHHETE-EEEEETTH--G-GGHHHHHTSS-SEEEE-TTS-HHHHHHHHTTSSEEEEEB-G-
T ss_pred HHHHHHHHHHHHhCCCceEEEECCc--hHHHHHHHHhcCCCEEEEcCCCCHHHHHHHhCCCeEEECCCCcc
Confidence 5678899999999984566787743 2357888999999999986544321 22 366777777664
No 107
>cd08604 GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 2 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play important an role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP
Probab=23.28 E-value=1.1e+02 Score=25.64 Aligned_cols=42 Identities=21% Similarity=0.218 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCeEEecCCCCcCCh-------------HHHHHHHHHcCCCEEEEecCC
Q 046751 63 VVVELIHRTSGLAVLAHPWALKNP-------------AAIIRKLKDVGLHRLEVYRSD 107 (155)
Q Consensus 63 e~I~~I~~aGGv~VlAHP~~~~~~-------------~~~l~~l~~~GldGIEv~~~~ 107 (155)
+.|+.+|++| +.|. +|..+.. .+....+.+.|+|||-.-+|.
T Consensus 241 ~~v~~a~~~G-l~v~--vwTvn~~~~~~~~~~~~~~~~~~~~~~~~~GVdgIiTD~P~ 295 (300)
T cd08604 241 NVVEKLQSAN-LTVY--VEVLRNEFVSLAFDFFADPTVEINSYVQGAGVDGFITEFPA 295 (300)
T ss_pred HHHHHHHHCC-CEEE--EEEecCCccccchhccCCHHHHHHHHHHHcCCCEEEecCch
Confidence 5667777765 4443 4433321 234566778899999877764
No 108
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=23.20 E-value=2.2e+02 Score=24.22 Aligned_cols=46 Identities=20% Similarity=0.385 Sum_probs=32.3
Q ss_pred cCCC-CC------HHHHHHHHHhc----CCeEEecCCCCcCChHHHHHHHHHcCCCEEE
Q 046751 55 MGDM-HT------PQVVVELIHRT----SGLAVLAHPWALKNPAAIIRKLKDVGLHRLE 102 (155)
Q Consensus 55 l~~g-~~------~~e~I~~I~~a----GGv~VlAHP~~~~~~~~~l~~l~~~GldGIE 102 (155)
|+.| |+ +++.++.|++. --+++-++|.... .+.++.+++.|+.-|.
T Consensus 57 fGGGTPs~l~~~~l~~ll~~i~~~~~~~~eitiE~nP~~~~--~e~l~~l~~~GvnRiS 113 (350)
T PRK08446 57 IGGGTPSTVSAKFYEPIFEIISPYLSKDCEITTEANPNSAT--KAWLKGMKNLGVNRIS 113 (350)
T ss_pred ECCCccccCCHHHHHHHHHHHHHhcCCCceEEEEeCCCCCC--HHHHHHHHHcCCCEEE
Confidence 6667 44 46667777653 2477889997543 5788899999987664
No 109
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=22.78 E-value=3.5e+02 Score=22.69 Aligned_cols=38 Identities=21% Similarity=0.134 Sum_probs=22.8
Q ss_pred CCeEEecCCCCcCC--hHHHHHHHHHcCCCEEEEecCCCC
Q 046751 72 SGLAVLAHPWALKN--PAAIIRKLKDVGLHRLEVYRSDGK 109 (155)
Q Consensus 72 GGv~VlAHP~~~~~--~~~~l~~l~~~GldGIEv~~~~~~ 109 (155)
|.++|++|-..... .-++.+...+.|.||+=+..|.+.
T Consensus 76 grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~ 115 (309)
T cd00952 76 GRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMWL 115 (309)
T ss_pred CCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcCC
Confidence 44778877654221 223445555678888877777543
No 110
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=22.69 E-value=2.1e+02 Score=24.22 Aligned_cols=46 Identities=15% Similarity=0.291 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcCCeEEecC--CCCcCChHHHHHHHHHcCCCEEEEecCC
Q 046751 61 PQVVVELIHRTSGLAVLAH--PWALKNPAAIIRKLKDVGLHRLEVYRSD 107 (155)
Q Consensus 61 ~~e~I~~I~~aGGv~VlAH--P~~~~~~~~~l~~l~~~GldGIEv~~~~ 107 (155)
+.+.++.++++=.++|++- |.. ....+....+.+.|+|||-+.+..
T Consensus 153 ~~eil~~v~~~~~iPV~vKl~p~~-~~~~~~a~~l~~~G~dgI~~~n~~ 200 (334)
T PRK07565 153 YLDILRAVKSAVSIPVAVKLSPYF-SNLANMAKRLDAAGADGLVLFNRF 200 (334)
T ss_pred HHHHHHHHHhccCCcEEEEeCCCc-hhHHHHHHHHHHcCCCeEEEECCc
Confidence 4567788887767888876 321 123456677778999999998864
No 111
>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia
Probab=22.50 E-value=1.2e+02 Score=25.92 Aligned_cols=42 Identities=10% Similarity=0.230 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCeEEecCCCCcCChHHHHHHHHHcCCCEEEEecCC
Q 046751 62 QVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVYRSD 107 (155)
Q Consensus 62 ~e~I~~I~~aGGv~VlAHP~~~~~~~~~l~~l~~~GldGIEv~~~~ 107 (155)
.+.++.+|++| +.|. +|..+ ..+.+..+.+.|+|||-.-+|.
T Consensus 235 ~~~v~~~~~~G-~~v~--vWTVN-d~~~~~~l~~~GVDgIiTD~P~ 276 (315)
T cd08609 235 ALEIKELRKDN-VSVN--LWVVN-EPWLFSLLWCSGVSSVTTNACQ 276 (315)
T ss_pred HHHHHHHHHCC-CEEE--EECCC-CHHHHHHHHhcCCCEEEcCCHH
Confidence 45667777764 4443 34443 3567888999999999887764
No 112
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=22.39 E-value=3.1e+02 Score=21.61 Aligned_cols=42 Identities=19% Similarity=0.145 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHhcCCeEEecCCCC---cCChHHHHHHHHHcC-CCEE
Q 046751 59 HTPQVVVELIHRTSGLAVLAHPWA---LKNPAAIIRKLKDVG-LHRL 101 (155)
Q Consensus 59 ~~~~e~I~~I~~aGGv~VlAHP~~---~~~~~~~l~~l~~~G-ldGI 101 (155)
.++.+.++.+|++|=.++ -|--. ...++.-++.+++.+ .|||
T Consensus 31 ~~l~~~v~~~~~~gK~vf-VHiDli~Gl~~D~~~i~~L~~~~~~dGI 76 (175)
T PF04309_consen 31 GNLKDIVKRLKAAGKKVF-VHIDLIEGLSRDEAGIEYLKEYGKPDGI 76 (175)
T ss_dssp CCHHHHHHHHHHTT-EEE-EECCGEETB-SSHHHHHHHHHTT--SEE
T ss_pred HHHHHHHHHHHHcCCEEE-EEehhcCCCCCCHHHHHHHHHcCCCcEE
Confidence 789999999999986654 45432 234567788888877 9998
No 113
>PRK07094 biotin synthase; Provisional
Probab=22.29 E-value=2e+02 Score=23.88 Aligned_cols=39 Identities=13% Similarity=0.114 Sum_probs=27.1
Q ss_pred HHHHHHHHHhcCCeEEecCCCCcCChHHHHHHHHHcCCCEE
Q 046751 61 PQVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRL 101 (155)
Q Consensus 61 ~~e~I~~I~~aGGv~VlAHP~~~~~~~~~l~~l~~~GldGI 101 (155)
+.++++.|++..++.+-.+++.. ..+.++.|++.|++.+
T Consensus 105 l~~l~~~i~~~~~l~i~~~~g~~--~~e~l~~Lk~aG~~~v 143 (323)
T PRK07094 105 IADIIKEIKKELDVAITLSLGER--SYEEYKAWKEAGADRY 143 (323)
T ss_pred HHHHHHHHHccCCceEEEecCCC--CHHHHHHHHHcCCCEE
Confidence 45677777776667666666532 3578889999998854
No 114
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=22.26 E-value=1.4e+02 Score=24.30 Aligned_cols=41 Identities=12% Similarity=0.301 Sum_probs=25.9
Q ss_pred HHHHHHHhcCCeEEecCCCCc-CChHHHHHHHHHcCCCEEEEecC
Q 046751 63 VVVELIHRTSGLAVLAHPWAL-KNPAAIIRKLKDVGLHRLEVYRS 106 (155)
Q Consensus 63 e~I~~I~~aGGv~VlAHP~~~-~~~~~~l~~l~~~GldGIEv~~~ 106 (155)
+.|+.+|++| +.|. +|.. .+..+.++.+.++|+|||-.-+|
T Consensus 236 ~~v~~~~~~G-l~v~--~WTv~~n~~~~~~~l~~~GVdgIiTD~p 277 (286)
T cd08606 236 RLIQVVKRSG-LVCV--SYGVLNNDPENAKTQVKAGVDAVIVDSV 277 (286)
T ss_pred HHHHHHHHCC-cEEE--EECCccCCHHHHHHHHHcCCCEEEECCH
Confidence 5667777765 4443 4543 13356678888899999876554
No 115
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=21.94 E-value=1.1e+02 Score=25.60 Aligned_cols=61 Identities=16% Similarity=0.167 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHhcCCeEEecCCCCcCChHHHHHHHHHcCCCEEEEecCCCCc----cccc--ceeeecCCC
Q 046751 59 HTPQVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVYRSDGKL----VGVI--FTLQDGSHY 123 (155)
Q Consensus 59 ~~~~e~I~~I~~aGGv~VlAHP~~~~~~~~~l~~l~~~GldGIEv~~~~~~~----~~~~--L~~tgGSD~ 123 (155)
+...++++.|++.|+.+++ |-.. +....++.+++.|+|++-+-+. .+. +.++ ..+.||=|-
T Consensus 220 p~~k~i~~~i~~~g~~~il-H~CG--~~~~~~~~l~~~g~d~ls~d~~-~~l~~~~~~~g~~~~i~Gnidp 286 (340)
T TIGR01463 220 PYQKRLFAYIKEIGGITVL-HICG--FTQPILRDIANNGCFGFSVDMK-PGMDHAKRVIGGQASLVGNLSP 286 (340)
T ss_pred HHHHHHHHHHHhcCCceEE-EECC--CchhhHHHHHHhCCCEEeecCC-CCHHHHHHHcCCceEEEecCCh
Confidence 4567888899988887776 6443 2245778889999999864443 232 2333 555788765
No 116
>PLN02389 biotin synthase
Probab=21.93 E-value=3e+02 Score=24.07 Aligned_cols=39 Identities=21% Similarity=0.152 Sum_probs=26.1
Q ss_pred HHHHHHHHhcCCeEEecCCCCcCChHHHHHHHHHcCCCEEEE
Q 046751 62 QVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEV 103 (155)
Q Consensus 62 ~e~I~~I~~aGGv~VlAHP~~~~~~~~~l~~l~~~GldGIEv 103 (155)
.++++.|++. |+.+.+..+. ...+.+.+|++.|+|.+-.
T Consensus 156 ~eiir~ik~~-~l~i~~s~G~--l~~E~l~~LkeAGld~~~~ 194 (379)
T PLN02389 156 LEYVKEIRGM-GMEVCCTLGM--LEKEQAAQLKEAGLTAYNH 194 (379)
T ss_pred HHHHHHHhcC-CcEEEECCCC--CCHHHHHHHHHcCCCEEEe
Confidence 3667777754 4656655543 2367889999999998644
No 117
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=21.81 E-value=1.9e+02 Score=17.30 Aligned_cols=37 Identities=8% Similarity=0.130 Sum_probs=23.2
Q ss_pred HHHHHHHHHcCCCCC-HHHHHHHHHhc-CCCCCHHHHHHHH
Q 046751 30 LHVARAMVEAGHVEN-LKHAFADISMM-GDMHTPQVVVELI 68 (155)
Q Consensus 30 ~Hia~~Lv~~g~~~~-~~~af~~~~~l-~~g~~~~e~I~~I 68 (155)
.....+|+..||-+. ...+.++. . .++.++++.|+..
T Consensus 4 ~d~~~AL~~LGy~~~e~~~av~~~--~~~~~~~~e~~ik~a 42 (47)
T PF07499_consen 4 EDALEALISLGYSKAEAQKAVSKL--LEKPGMDVEELIKQA 42 (47)
T ss_dssp HHHHHHHHHTTS-HHHHHHHHHHH--HHSTTS-HHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh--hcCCCCCHHHHHHHH
Confidence 346778899998644 34455666 4 5558888877654
No 118
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=21.75 E-value=2.2e+02 Score=21.34 Aligned_cols=10 Identities=30% Similarity=0.451 Sum_probs=5.2
Q ss_pred CCHHHHHHHH
Q 046751 59 HTPQVVVELI 68 (155)
Q Consensus 59 ~~~~e~I~~I 68 (155)
-|.++|++.|
T Consensus 75 ~T~EEALEVI 84 (128)
T PF09868_consen 75 KTDEEALEVI 84 (128)
T ss_pred CcHHHHHHHH
Confidence 4555555544
No 119
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=21.64 E-value=2.5e+02 Score=23.18 Aligned_cols=47 Identities=13% Similarity=0.188 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCCeEEecCCC-CcCChHHHHHHHHHcCCCEEEEecCC
Q 046751 61 PQVVVELIHRTSGLAVLAHPW-ALKNPAAIIRKLKDVGLHRLEVYRSD 107 (155)
Q Consensus 61 ~~e~I~~I~~aGGv~VlAHP~-~~~~~~~~l~~l~~~GldGIEv~~~~ 107 (155)
+.++++.|+++-.++|...=. ......++.+.+.+.|+|||.+.|..
T Consensus 145 ~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~nt~ 192 (301)
T PRK07259 145 AYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEEAGADGLSLINTL 192 (301)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHHcCCCEEEEEccc
Confidence 577888888886677766411 11122356667778999999987753
No 120
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=21.59 E-value=1.2e+02 Score=20.60 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=23.5
Q ss_pred HHHcCCCCC----HHHHHHHHHhcCCCCCHHHHHHHHHhc
Q 046751 36 MVEAGHVEN----LKHAFADISMMGDMHTPQVVVELIHRT 71 (155)
Q Consensus 36 Lv~~g~~~~----~~~af~~~~~l~~g~~~~e~I~~I~~a 71 (155)
|-++|+-+. ++.+|+.+ +..+.+++++++.+.+.
T Consensus 23 LrR~Gfs~~~i~~l~~ayr~l--~~~~~~~~~a~~~l~~~ 60 (83)
T PF13720_consen 23 LRRRGFSKEEISALRRAYRIL--FRSGLTLEEALEELEEE 60 (83)
T ss_dssp HHHTTS-HHHHHHHHHHHHHH--HTSSS-HHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHH--HhCCCCHHHHHHHHHHh
Confidence 334555433 56788888 77779999999999883
No 121
>cd08602 GDPD_ScGlpQ1_like Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively.
Probab=21.31 E-value=1.1e+02 Score=25.85 Aligned_cols=41 Identities=32% Similarity=0.402 Sum_probs=25.6
Q ss_pred HHHHHHHhcCCeEEecCCCCcCC------------hHHHHHHHHHcCCCEEEEecC
Q 046751 63 VVVELIHRTSGLAVLAHPWALKN------------PAAIIRKLKDVGLHRLEVYRS 106 (155)
Q Consensus 63 e~I~~I~~aGGv~VlAHP~~~~~------------~~~~l~~l~~~GldGIEv~~~ 106 (155)
+.++.+|++| +.|. ||..+. ..+.+..|.+.|+|||-.-+|
T Consensus 257 ~~v~~a~~~g-l~v~--~wTvn~~~~~~~~~~~~~~~~~~~~l~~~GVdgiiTD~P 309 (309)
T cd08602 257 DLVEDAHAAG-LQVH--PYTFRNENTFLPPDFFGDPYAEYRAFLDAGVDGLFTDFP 309 (309)
T ss_pred HHHHHHHHcC-CEEE--EEEecCCCcccCcccCCCHHHHHHHHHHhCCCEEeCCCC
Confidence 6677777775 4444 343322 125677888899999865443
No 122
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=20.98 E-value=1.1e+02 Score=25.42 Aligned_cols=17 Identities=18% Similarity=0.241 Sum_probs=15.1
Q ss_pred hHHHHhCCCCCCHHHHH
Q 046751 2 ILKLNKLKLPLKWENVA 18 (155)
Q Consensus 2 i~~L~~~G~~I~~e~v~ 18 (155)
.++|+.+|++|+.+++.
T Consensus 57 ~~rL~rlgf~v~eeei~ 73 (262)
T KOG3040|consen 57 HERLQRLGFDVSEEEIF 73 (262)
T ss_pred HHHHHHhCCCccHHHhc
Confidence 57899999999999984
No 123
>PF04135 Nop10p: Nucleolar RNA-binding protein, Nop10p family; InterPro: IPR007264 H/ACA ribonucleoprotein particles (RNPs) are a family of RNA pseudouridine synthases that specify modification sites through guide RNAs. More than 100 mammalian H/ACA RNAs form an equal number of ribonucleoproteins (RNPs) by associating with the same four core proteins: Cbf5, Gar1, Nhp2 and Nop10. The function of these H/ACA RNPs is essential for biogenesis of the ribosome, splicing of precursor mRNAs (pre-mRNAs), maintenance of telomeres and probably for additional cellular processes []. Recent crystal structures of archaeal H/ACA protein complexes show how the same four proteins accommodate >100 distinct but related H/ACA RNAs []. The complex contains a stable core composed of Cbf5 and Nop10, to which Gar1 and Nhp2 subsequently bind, the complex interacts with snoRNAs []. In eukaryotes Nop10 is a nucleolar protein that is specifically associated with H/ACA snoRNAs. It is essential for normal 18S rRNA production and rRNA pseudouridylation by the ribonucleoprotein particles containing H/ACA snoRNAs (H/ACA snoRNPs). Nop10 is probably necessary for the stability of these RNPs [].; PDB: 2RFK_B 3LWR_B 2HVY_C 3HAX_C 3MQK_B 3LWO_B 3LWV_B 3HAY_C 3HJY_B 2EY4_E ....
Probab=20.84 E-value=58 Score=20.85 Aligned_cols=15 Identities=27% Similarity=0.308 Sum_probs=12.2
Q ss_pred hcCCeEEecCCCCcC
Q 046751 70 RTSGLAVLAHPWALK 84 (155)
Q Consensus 70 ~aGGv~VlAHP~~~~ 84 (155)
..|+.+..|||-++.
T Consensus 22 ~cG~~T~~ahPaRFS 36 (53)
T PF04135_consen 22 PCGGPTESAHPARFS 36 (53)
T ss_dssp TTSSBSEESSSSSS-
T ss_pred CCCCCCcCCcCCCCC
Confidence 479999999998764
No 124
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=20.79 E-value=1.5e+02 Score=23.66 Aligned_cols=19 Identities=16% Similarity=0.440 Sum_probs=13.9
Q ss_pred hHHHHHHHHHcCCCEEEEe
Q 046751 86 PAAIIRKLKDVGLHRLEVY 104 (155)
Q Consensus 86 ~~~~l~~l~~~GldGIEv~ 104 (155)
..+.++.+++.|++|||++
T Consensus 15 l~~~l~~~~~~G~~~vEl~ 33 (275)
T PRK09856 15 IEHAFRDASELGYDGIEIW 33 (275)
T ss_pred HHHHHHHHHHcCCCEEEEc
Confidence 3567777777888888875
No 125
>cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation.
Probab=20.77 E-value=1.5e+02 Score=25.34 Aligned_cols=42 Identities=5% Similarity=0.075 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCeEEecCCCCcCChHHHHHHHHHcCCCEEEEecCC
Q 046751 62 QVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVYRSD 107 (155)
Q Consensus 62 ~e~I~~I~~aGGv~VlAHP~~~~~~~~~l~~l~~~GldGIEv~~~~ 107 (155)
++.++.+|++| +.| |+|..+. .+.+..+.+.|+|||-.-+|.
T Consensus 235 ~~~v~~a~~~G-l~V--~vWTVNd-~~~~~~l~~~GVDgIiTD~P~ 276 (316)
T cd08610 235 SNDIRDYKAAN-IHT--NVYVINE-PWLFSLAWCSGIHSVTTNNIH 276 (316)
T ss_pred HHHHHHHHHCC-CEE--EEECCCC-HHHHHHHHhCCcCEEEeCCHH
Confidence 35666666665 333 2444333 466788899999999888774
No 126
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=20.76 E-value=2.3e+02 Score=24.69 Aligned_cols=40 Identities=13% Similarity=0.356 Sum_probs=29.3
Q ss_pred HHHHHHHHhcC------CeEEecCCCCcCChHHHHHHHHHcCCCEEEE
Q 046751 62 QVVVELIHRTS------GLAVLAHPWALKNPAAIIRKLKDVGLHRLEV 103 (155)
Q Consensus 62 ~e~I~~I~~aG------Gv~VlAHP~~~~~~~~~l~~l~~~GldGIEv 103 (155)
++.++.|++.. -+++-++|.... .+.++.|++.|+.-|.+
T Consensus 82 ~~ll~~i~~~~~~~~~~eitiE~nP~~~~--~e~l~~l~~~GvnRiSi 127 (390)
T PRK06582 82 EGIINKISNLAIIDNQTEITLETNPTSFE--TEKFKAFKLAGINRVSI 127 (390)
T ss_pred HHHHHHHHHhCCCCCCCEEEEEeCCCcCC--HHHHHHHHHCCCCEEEE
Confidence 45666777643 589999997643 57889999999876653
No 127
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=20.73 E-value=75 Score=25.63 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=17.4
Q ss_pred CCHHHHHHHHHhcCCeEEec
Q 046751 59 HTPQVVVELIHRTSGLAVLA 78 (155)
Q Consensus 59 ~~~~e~I~~I~~aGGv~VlA 78 (155)
-+..|+|+.+++.||.|+++
T Consensus 155 ~Ti~E~Ie~lke~g~kpv~v 174 (203)
T COG0856 155 STIKETIEQLKEEGGKPVLV 174 (203)
T ss_pred hhHHHHHHHHHHcCCCcEEE
Confidence 78999999999999966654
No 128
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=20.69 E-value=1.4e+02 Score=23.96 Aligned_cols=17 Identities=18% Similarity=0.217 Sum_probs=8.5
Q ss_pred HHHHHHHHcCCCEEEEe
Q 046751 88 AIIRKLKDVGLHRLEVY 104 (155)
Q Consensus 88 ~~l~~l~~~GldGIEv~ 104 (155)
+.++.+++.|++|||..
T Consensus 25 e~~~~~~~~G~~~iEl~ 41 (283)
T PRK13209 25 EKLAIAKTAGFDFVEMS 41 (283)
T ss_pred HHHHHHHHcCCCeEEEe
Confidence 44444455555555554
No 129
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=20.36 E-value=1.3e+02 Score=26.28 Aligned_cols=42 Identities=24% Similarity=0.266 Sum_probs=27.4
Q ss_pred CHHHHHHHHHhcCCeEEecCCCCcCChHHHHHHHHHcCCCEEEE
Q 046751 60 TPQVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEV 103 (155)
Q Consensus 60 ~~~e~I~~I~~aGGv~VlAHP~~~~~~~~~l~~l~~~GldGIEv 103 (155)
.+.++|+.|++.-|+.+.+-.+.. ..+..++|++.|+|....
T Consensus 119 ~i~~~v~~Vk~~~~le~c~slG~l--~~eq~~~L~~aGvd~ynh 160 (335)
T COG0502 119 EVVEAIKAVKEELGLEVCASLGML--TEEQAEKLADAGVDRYNH 160 (335)
T ss_pred HHHHHHHHHHHhcCcHHhhccCCC--CHHHHHHHHHcChhheec
Confidence 345566666655557777666632 357778888888887643
No 130
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=20.09 E-value=4.9e+02 Score=21.64 Aligned_cols=49 Identities=12% Similarity=0.135 Sum_probs=31.3
Q ss_pred CCHHHHHHHHH-----hcCCeEEecCCCCcCChH---HHHHHHHHcCCCEEEEecCCCC
Q 046751 59 HTPQVVVELIH-----RTSGLAVLAHPWALKNPA---AIIRKLKDVGLHRLEVYRSDGK 109 (155)
Q Consensus 59 ~~~~e~I~~I~-----~aGGv~VlAHP~~~~~~~---~~l~~l~~~GldGIEv~~~~~~ 109 (155)
+|.+|-.++++ ..|.++|+|+=.. ... +..+...+.|.||+-+..|.+.
T Consensus 57 Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~--~t~~~i~~~~~a~~~Gadav~~~pP~y~ 113 (303)
T PRK03620 57 LTPDEYSQVVRAAVETTAGRVPVIAGAGG--GTAQAIEYAQAAERAGADGILLLPPYLT 113 (303)
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEecCC--CHHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 56665444443 2455888887653 222 3455566789999999888765
No 131
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=20.07 E-value=2.2e+02 Score=22.99 Aligned_cols=55 Identities=18% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHhcCC---eEEec----CCCCcCChHHHHHHHHHcCCCEE
Q 046751 45 LKHAFADISMMGDMHTPQVVVELIHRTSG---LAVLA----HPWALKNPAAIIRKLKDVGLHRL 101 (155)
Q Consensus 45 ~~~af~~~~~l~~g~~~~e~I~~I~~aGG---v~VlA----HP~~~~~~~~~l~~l~~~GldGI 101 (155)
++++-.+- |.+|.+++...+.+++... +++.- .|......++.++.+++.|.||+
T Consensus 47 I~~a~~~a--l~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~gi 108 (242)
T cd04724 47 IQAASERA--LANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGL 108 (242)
T ss_pred HHHHHHHH--HHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEE
Done!