Query 046755
Match_columns 155
No_of_seqs 228 out of 1073
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 04:11:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046755.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046755hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0700 Protein phosphatase 2C 99.9 1.2E-27 2.6E-32 195.7 8.2 103 1-103 281-388 (390)
2 KOG0698 Serine/threonine prote 99.9 2.6E-22 5.7E-27 164.1 8.8 94 1-135 214-312 (330)
3 PLN03145 Protein phosphatase 2 99.9 9.4E-22 2E-26 162.6 10.3 103 1-138 234-341 (365)
4 KOG0697 Protein phosphatase 1B 99.9 1.2E-21 2.7E-26 154.2 8.4 98 1-131 193-295 (379)
5 PTZ00224 protein phosphatase 2 99.8 2.7E-20 6E-25 154.6 9.8 96 1-130 173-274 (381)
6 PF00481 PP2C: Protein phospha 99.8 5.4E-20 1.2E-24 144.8 3.3 74 1-91 169-247 (254)
7 KOG0699 Serine/threonine prote 99.8 2E-19 4.4E-24 146.1 3.9 107 1-134 399-510 (542)
8 COG0631 PTC1 Serine/threonine 99.7 7.2E-17 1.6E-21 128.3 8.8 72 37-130 183-255 (262)
9 cd00143 PP2Cc Serine/threonine 99.6 3.2E-15 7E-20 115.8 8.8 72 33-126 178-254 (254)
10 KOG1323 Serine/threonine phosp 99.6 8.9E-15 1.9E-19 118.2 9.0 109 1-129 367-489 (493)
11 smart00332 PP2Cc Serine/threon 99.6 6.2E-15 1.3E-19 114.7 7.9 70 33-124 181-255 (255)
12 PRK14559 putative protein seri 99.5 2.7E-13 5.7E-18 119.1 9.6 73 37-131 561-639 (645)
13 KOG1379 Serine/threonine prote 99.3 1.3E-11 2.8E-16 99.1 7.8 92 34-126 228-330 (330)
14 KOG0618 Serine/threonine phosp 99.2 3.8E-11 8.3E-16 107.5 7.2 77 33-130 698-775 (1081)
15 TIGR02865 spore_II_E stage II 98.3 1.7E-06 3.6E-11 78.2 7.6 70 38-126 686-763 (764)
16 PF07228 SpoIIE: Stage II spor 98.2 5.5E-06 1.2E-10 61.9 7.4 72 37-127 112-193 (193)
17 smart00331 PP2C_SIG Sigma fact 97.9 3.5E-05 7.6E-10 57.7 5.9 51 38-89 138-191 (193)
18 COG2208 RsbU Serine phosphatas 97.3 0.00086 1.9E-08 55.6 7.6 70 40-127 287-366 (367)
19 PF13672 PP2C_2: Protein phosp 96.6 0.0021 4.6E-08 48.7 3.3 36 40-76 158-194 (212)
20 PF09436 DUF2016: Domain of un 68.3 3.8 8.2E-05 26.4 1.6 26 45-70 22-47 (72)
21 PRK06369 nac nascent polypepti 51.2 83 0.0018 22.1 6.4 44 32-75 36-86 (115)
22 COG2168 DsrH Uncharacterized c 48.2 18 0.00039 24.6 2.3 35 42-77 18-52 (96)
23 PF14014 DUF4230: Protein of u 35.4 1.6E+02 0.0035 20.8 6.3 41 35-75 74-114 (157)
24 PRK03072 heat shock protein Ht 34.8 48 0.001 26.7 3.3 41 34-75 91-133 (288)
25 PF07394 DUF1501: Protein of u 30.8 3E+02 0.0064 22.8 7.5 23 113-135 287-310 (392)
26 TIGR03735 PRTRC_A PRTRC system 29.1 38 0.00082 25.9 1.7 25 48-73 25-49 (192)
27 PRK05457 heat shock protein Ht 28.2 86 0.0019 25.2 3.7 24 52-75 117-140 (284)
28 PRK02391 heat shock protein Ht 26.4 46 0.00099 27.0 1.9 24 52-75 116-139 (296)
29 PRK03982 heat shock protein Ht 25.9 49 0.0011 26.5 2.0 24 52-75 108-131 (288)
30 PRK02870 heat shock protein Ht 24.4 94 0.002 25.8 3.4 24 52-75 156-179 (336)
31 PRK01345 heat shock protein Ht 23.7 1E+02 0.0023 25.2 3.5 24 52-75 107-130 (317)
32 COG3484 Predicted proteasome-t 23.3 78 0.0017 24.7 2.5 28 47-76 39-66 (255)
33 PRK03001 M48 family peptidase; 21.5 60 0.0013 25.9 1.7 23 53-75 108-130 (283)
34 COG0501 HtpX Zn-dependent prot 21.5 61 0.0013 25.5 1.7 41 34-75 121-163 (302)
35 PF13986 DUF4224: Domain of un 21.4 1.1E+02 0.0023 17.8 2.3 24 62-85 1-24 (47)
36 PF13649 Methyltransf_25: Meth 20.8 1.3E+02 0.0028 19.4 3.0 23 53-75 70-92 (101)
37 COG2144 Selenophosphate synthe 20.6 91 0.002 25.7 2.5 25 42-68 47-71 (324)
No 1
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=99.94 E-value=1.2e-27 Score=195.70 Aligned_cols=103 Identities=56% Similarity=0.877 Sum_probs=97.4
Q ss_pred CccccccccccccccCCCCCCCCCCCCCCCCCCceeccceeEEEeCCCCCeEEEEecccccccCChHHHHHHHHc-----
Q 046755 1 ISRSIGDAYLKKVEFNREPLLPKFRLPEPFHKPILLAEPTVSVQRLYPEDQFLIFASDGLWEHLSNQEAVDIVHN----- 75 (155)
Q Consensus 1 vSRa~GD~~~K~~~~~~~~~~~~~~~~~~~~~p~v~~~Pdv~~~~l~~~d~fliLaSDGLwd~l~~~ei~~~v~~----- 75 (155)
+||||||.++|++..+++|++.+|+.+.+.+||||+|+|+|++|+|+++|+|||||||||||+|++||++.+|..
T Consensus 281 vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t~PyltaeP~i~~HrL~p~DkFLIlASDGLwE~lsNeeaV~lV~~~i~~~ 360 (390)
T KOG0700|consen 281 VSRAFGDGYLKWPEFNQEPLLEKFRIPYIGTPPYLTAEPSITHHKLTPNDKFLILASDGLWEYLSNEEAVSLVHEFISGK 360 (390)
T ss_pred eeeeccceeecchhhccchhHhhcCCCCCCCCCceeccceEEEEEcCCCCeEEEEeccchhhhcChHHHHHHHHHhhccC
Confidence 699999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcchHHHHHHHHHHHHHHHhhhhhhhh
Q 046755 76 CPRNGVARKLVKAALHEAAKKREMRYSD 103 (155)
Q Consensus 76 ~~~~~~a~~L~~~a~~~~~~~~~~~~~~ 103 (155)
.+..++|++|+++|+.++++.+.++++.
T Consensus 361 ~pd~~~A~hLIr~aL~~aakk~~~r~s~ 388 (390)
T KOG0700|consen 361 FPDGNPATHLIRHALGRAAKKRGMRLSD 388 (390)
T ss_pred CCCCCHHHHHHHHHHhhhhhhccccHhh
Confidence 6778899999999999999877766654
No 2
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.87 E-value=2.6e-22 Score=164.10 Aligned_cols=94 Identities=43% Similarity=0.615 Sum_probs=78.9
Q ss_pred CccccccccccccccCCCCCCCCCCCCCCCCCCceeccceeEEEeCCCCCeEEEEecccccccCChHHHHHHHHcCC---
Q 046755 1 ISRSIGDAYLKKVEFNREPLLPKFRLPEPFHKPILLAEPTVSVQRLYPEDQFLIFASDGLWEHLSNQEAVDIVHNCP--- 77 (155)
Q Consensus 1 vSRa~GD~~~K~~~~~~~~~~~~~~~~~~~~~p~v~~~Pdv~~~~l~~~d~fliLaSDGLwd~l~~~ei~~~v~~~~--- 77 (155)
|||||||+.+|. ++|+++||+....+...|+|||||||||||+|++||++++|+...
T Consensus 214 vsRa~GD~~~k~--------------------~~v~a~Pei~~~~~~~~deFLiLasDGiwDv~s~qeav~~V~~~~~~~ 273 (330)
T KOG0698|consen 214 VSRAFGDVELKS--------------------QGVIAEPEIQQVKINSDDEFLILASDGIWDVVSNQEAVDLVRDELASI 273 (330)
T ss_pred EeeecCCHHhcC--------------------CcEecCCceEEEEcCCCCcEEEEeCCchhcccChHHHHHHHHHHhhcc
Confidence 699999999995 359999999999999999999999999999999999999999842
Q ss_pred --cchHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCccCCceEEEEEEcCCcccccCC
Q 046755 78 --RNGVARKLVKAALHEAAKKREMRYSDLKKIDRGVRRHFHDDITVIILFLDSYLISRSS 135 (155)
Q Consensus 78 --~~~~a~~L~~~a~~~~~~~~~~~~~~~~~~~~~~~rg~~DNiTvivv~l~~~~~~~~~ 135 (155)
...++..+...|+ .|++.||||||||.|.+.......
T Consensus 274 ~~~~~a~~~l~~~a~---------------------~~~s~DnitvvvV~l~~~~~~~~~ 312 (330)
T KOG0698|consen 274 SSPLAAAKLLATEAL---------------------SRGSKDNITVVVVRLKSSPKSPSS 312 (330)
T ss_pred ccHHHHHHHHHHHHh---------------------hcCCCCCeEEEEEEecCccccccC
Confidence 2345556666665 478999999999999887654443
No 3
>PLN03145 Protein phosphatase 2c; Provisional
Probab=99.86 E-value=9.4e-22 Score=162.63 Aligned_cols=103 Identities=27% Similarity=0.414 Sum_probs=81.6
Q ss_pred CccccccccccccccCCCCCCCCCCCCCCCCCCceeccceeEEEeCCCCCeEEEEecccccccCChHHHHHHHHcC----
Q 046755 1 ISRSIGDAYLKKVEFNREPLLPKFRLPEPFHKPILLAEPTVSVQRLYPEDQFLIFASDGLWEHLSNQEAVDIVHNC---- 76 (155)
Q Consensus 1 vSRa~GD~~~K~~~~~~~~~~~~~~~~~~~~~p~v~~~Pdv~~~~l~~~d~fliLaSDGLwd~l~~~ei~~~v~~~---- 76 (155)
|||||||+.+|.... ...+.++++||+..+++.++|+|||||||||||+|+++++++++.+.
T Consensus 234 vTRalGD~~~k~~k~--------------~~~~~vs~ePdv~~~~l~~~D~fLILaSDGLwdvls~ee~v~~i~~~l~~~ 299 (365)
T PLN03145 234 VARALGDWHMEGMKG--------------SDGGPLSAEPELMTTQLTEEDEFLIIGCDGIWDVFRSQNAVDFARRRLQEH 299 (365)
T ss_pred ccccccccccccccc--------------ccCCCcceEEEEEEEECCCCCEEEEEeCCccccCcCHHHHHHHHHHHHhcC
Confidence 699999998874320 01123789999999999999999999999999999999998877542
Q ss_pred -CcchHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCccCCceEEEEEEcCCcccccCCCCC
Q 046755 77 -PRNGVARKLVKAALHEAAKKREMRYSDLKKIDRGVRRHFHDDITVIILFLDSYLISRSSWDG 138 (155)
Q Consensus 77 -~~~~~a~~L~~~a~~~~~~~~~~~~~~~~~~~~~~~rg~~DNiTvivv~l~~~~~~~~~~~~ 138 (155)
..+.+|+.|++.|+. |++.||||||||+|+.........+.
T Consensus 300 ~~p~~aa~~Lv~~Al~---------------------rgs~DNITvIVV~l~~~~~~~~~~~~ 341 (365)
T PLN03145 300 NDPVMCSKELVDEALK---------------------RKSGDNLAVVVVCFQSQPPPNLVAPR 341 (365)
T ss_pred CCHHHHHHHHHHHHHh---------------------CCCCCCEEEEEEEeecCCCccccccc
Confidence 345678999999984 68899999999999986555444443
No 4
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=99.86 E-value=1.2e-21 Score=154.22 Aligned_cols=98 Identities=24% Similarity=0.470 Sum_probs=82.7
Q ss_pred CccccccccccccccCCCCCCCCCCCCCCCCCCceeccceeEEEeCCCCCeEEEEecccccccCChHHHHHHHHcCC---
Q 046755 1 ISRSIGDAYLKKVEFNREPLLPKFRLPEPFHKPILLAEPTVSVQRLYPEDQFLIFASDGLWEHLSNQEAVDIVHNCP--- 77 (155)
Q Consensus 1 vSRa~GD~~~K~~~~~~~~~~~~~~~~~~~~~p~v~~~Pdv~~~~l~~~d~fliLaSDGLwd~l~~~ei~~~v~~~~--- 77 (155)
|||||||+.||.... -.+..|+|+++|||........|+||||||||+||+|+++|++++++...
T Consensus 193 VSRAlGDydyK~v~~------------kgp~eQlVSPEPev~~~~R~eedeFivlACDGIwDVMtneelcefv~sRl~Vt 260 (379)
T KOG0697|consen 193 VSRALGDYDYKNVPG------------KGPTEQLVSPEPEVYIIERSEEDEFIVLACDGIWDVMTNEELCEFVKSRLEVT 260 (379)
T ss_pred eehhccCcccccCCC------------CCchhcccCCCCceEEeeccccCcEEEEEccchhhhcccHHHHHHHHhhheec
Confidence 699999999996531 23567889999999999999888899999999999999999999998753
Q ss_pred --cchHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCccCCceEEEEEEcCCccc
Q 046755 78 --RNGVARKLVKAALHEAAKKREMRYSDLKKIDRGVRRHFHDDITVIILFLDSYLI 131 (155)
Q Consensus 78 --~~~~a~~L~~~a~~~~~~~~~~~~~~~~~~~~~~~rg~~DNiTvivv~l~~~~~ 131 (155)
.+.+|...++.++. +|++||+|+++|-|...+.
T Consensus 261 ~dL~~vcn~VvDtCLh---------------------KGSRDNMsivlvcfp~APk 295 (379)
T KOG0697|consen 261 SDLEEVCNDVVDTCLH---------------------KGSRDNMSIVLVCFPGAPK 295 (379)
T ss_pred ccHHHHHHHHHHHHHh---------------------ccCccCceEEEEecCCCCC
Confidence 35678888888874 6899999999999965443
No 5
>PTZ00224 protein phosphatase 2C; Provisional
Probab=99.83 E-value=2.7e-20 Score=154.59 Aligned_cols=96 Identities=29% Similarity=0.435 Sum_probs=79.6
Q ss_pred CccccccccccccccCCCCCCCCCCCCCCCCCCceeccceeEEEeCCCCCeEEEEecccccc-cCChHHHHHHHHcC---
Q 046755 1 ISRSIGDAYLKKVEFNREPLLPKFRLPEPFHKPILLAEPTVSVQRLYPEDQFLIFASDGLWE-HLSNQEAVDIVHNC--- 76 (155)
Q Consensus 1 vSRa~GD~~~K~~~~~~~~~~~~~~~~~~~~~p~v~~~Pdv~~~~l~~~d~fliLaSDGLwd-~l~~~ei~~~v~~~--- 76 (155)
|||||||..+|..+. .....+.|+++|||..+++.++| ||||||||||| +++++|+++++.+.
T Consensus 173 vTRalGd~~~K~~~~------------~~~~~~~v~~~Pdi~~~~l~~~D-~llLaSDGL~d~~ls~eEi~~iv~~~l~~ 239 (381)
T PTZ00224 173 VSRAFGDRSFKVKGT------------GDYLEQKVIAVPDVTHLTCQSND-FIILACDGVFEGNFSNEEVVAFVKEQLET 239 (381)
T ss_pred eecccCCcccccccc------------cccccCcceeeeEEEEEECCCCC-EEEEECCCcCcCccCHHHHHHHHHHHHhc
Confidence 699999999997642 12234568999999999999888 99999999999 89999999999742
Q ss_pred --CcchHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCccCCceEEEEEEcCCcc
Q 046755 77 --PRNGVARKLVKAALHEAAKKREMRYSDLKKIDRGVRRHFHDDITVIILFLDSYL 130 (155)
Q Consensus 77 --~~~~~a~~L~~~a~~~~~~~~~~~~~~~~~~~~~~~rg~~DNiTvivv~l~~~~ 130 (155)
..+.+|+.|++.|+. ||+.||||||||++....
T Consensus 240 ~~~~~~aA~~Lv~~A~~---------------------rGs~DNITvIvV~~~~~~ 274 (381)
T PTZ00224 240 CDDLAVVAGRVCDEAIR---------------------RGSKDNISCLIVQLKDGA 274 (381)
T ss_pred CCCHHHHHHHHHHHHHh---------------------cCCCCCEEEEEEEeeCCC
Confidence 335688999999984 788999999999997654
No 6
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=99.78 E-value=5.4e-20 Score=144.83 Aligned_cols=74 Identities=49% Similarity=0.750 Sum_probs=59.7
Q ss_pred CccccccccccccccCCCCCCCCCCCCCCCCCCceeccceeEEEeCCCCCeEEEEecccccccCChHHHHHHHHcCC---
Q 046755 1 ISRSIGDAYLKKVEFNREPLLPKFRLPEPFHKPILLAEPTVSVQRLYPEDQFLIFASDGLWEHLSNQEAVDIVHNCP--- 77 (155)
Q Consensus 1 vSRa~GD~~~K~~~~~~~~~~~~~~~~~~~~~p~v~~~Pdv~~~~l~~~d~fliLaSDGLwd~l~~~ei~~~v~~~~--- 77 (155)
+||||||..+|.++ +++|+++|+|..+++.++|+|||||||||||+|+++|++++++...
T Consensus 169 ~sRalGd~~~k~~~-----------------~~~v~~~P~i~~~~l~~~d~flvlaSDGlwd~l~~~ei~~~v~~~~~~~ 231 (254)
T PF00481_consen 169 VSRALGDFDLKPPG-----------------KPGVIAEPDISEVDLTPDDEFLVLASDGLWDVLSNEEIVDIVRESLNSG 231 (254)
T ss_dssp SSB-EE-GGGTTCT-----------------SSSSB---EEEEEEEBTTEEEEEEE-HHHHTTSHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccc-----------------cceeeeecccccccccccceEEEEEcccccccCCHHHHHHHHHHHHhcC
Confidence 69999999999632 4579999999999999999999999999999999999999998753
Q ss_pred --cchHHHHHHHHHHH
Q 046755 78 --RNGVARKLVKAALH 91 (155)
Q Consensus 78 --~~~~a~~L~~~a~~ 91 (155)
++.+|+.|++.|++
T Consensus 232 ~~~~~~a~~L~~~A~~ 247 (254)
T PF00481_consen 232 RSPQEAAEKLVDEAIA 247 (254)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHh
Confidence 35689999999985
No 7
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.77 E-value=2e-19 Score=146.15 Aligned_cols=107 Identities=31% Similarity=0.504 Sum_probs=84.6
Q ss_pred CccccccccccccccCCCCCCCCCCCCCCCCCCceeccceeEEEeCCCCCeEEEEecccccccCChHHHHHHHHcCCc--
Q 046755 1 ISRSIGDAYLKKVEFNREPLLPKFRLPEPFHKPILLAEPTVSVQRLYPEDQFLIFASDGLWEHLSNQEAVDIVHNCPR-- 78 (155)
Q Consensus 1 vSRa~GD~~~K~~~~~~~~~~~~~~~~~~~~~p~v~~~Pdv~~~~l~~~d~fliLaSDGLwd~l~~~ei~~~v~~~~~-- 78 (155)
+||||||..||+... .++..|+|++-|||....|++.|+|+||||||||++|+.|+++++|+....
T Consensus 399 LSRA~GDHaYK~N~~------------Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~MsSqeVVdFvr~~l~~n 466 (542)
T KOG0699|consen 399 LSRAFGDHAYKKNQE------------LPLEEQMISALPDIKILALTPEDEFMVVACDGIWNSMSSQEVVDFVRDLLAKN 466 (542)
T ss_pred hhhhhhhhhhhcccC------------CChHHHHhhhcccceeEeecCcccEEEEEccchhhhccHHHHHHHHHHHHhcC
Confidence 589999999997652 256778999999999999999999999999999999999999999986432
Q ss_pred ---chHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCccCCceEEEEEEcCCcccccC
Q 046755 79 ---NGVARKLVKAALHEAAKKREMRYSDLKKIDRGVRRHFHDDITVIILFLDSYLISRS 134 (155)
Q Consensus 79 ---~~~a~~L~~~a~~~~~~~~~~~~~~~~~~~~~~~rg~~DNiTvivv~l~~~~~~~~ 134 (155)
..+|..|++++++-.. .+ ..-.+||+|||++.|++......
T Consensus 467 ~~ls~iceeL~D~CLAp~T--------------~G-DGTGCDNMT~ii~~Fkrk~~elq 510 (542)
T KOG0699|consen 467 SSLSEICEELCDACLAPST--------------DG-DGTGCDNMTVIITTFKRKSKELQ 510 (542)
T ss_pred chHHHHHHHHHHhhcCCCC--------------CC-CCcCCCcceEEEEEeccchhhcC
Confidence 3577777777764110 00 13458999999999986554333
No 8
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.69 E-value=7.2e-17 Score=128.27 Aligned_cols=72 Identities=39% Similarity=0.596 Sum_probs=64.8
Q ss_pred ccceeEEEeCCCCCeEEEEecccccccCChHHHHHHHHc-CCcchHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCcc
Q 046755 37 AEPTVSVQRLYPEDQFLIFASDGLWEHLSNQEAVDIVHN-CPRNGVARKLVKAALHEAAKKREMRYSDLKKIDRGVRRHF 115 (155)
Q Consensus 37 ~~Pdv~~~~l~~~d~fliLaSDGLwd~l~~~ei~~~v~~-~~~~~~a~~L~~~a~~~~~~~~~~~~~~~~~~~~~~~rg~ 115 (155)
.+|++....+.++| |||||||||||.++++++++++.. ...+.+++.|++.|++ +++
T Consensus 183 ~~p~~~~~~~~~~d-~llL~SDGl~d~v~~~~i~~il~~~~~~~~~~~~li~~a~~---------------------~g~ 240 (262)
T COG0631 183 LEPDITELELEPGD-FLLLCSDGLWDVVSDDEIVDILKNSETPQEAADKLIELALE---------------------GGG 240 (262)
T ss_pred cceeEEEEEcCCCC-EEEEECCCCccCcCHHHHHHHHhcCCCHHHHHHHHHHHHHh---------------------cCC
Confidence 67999999999996 999999999999999999999995 5567899999999985 578
Q ss_pred CCceEEEEEEcCCcc
Q 046755 116 HDDITVIILFLDSYL 130 (155)
Q Consensus 116 ~DNiTvivv~l~~~~ 130 (155)
.||||+++|.+....
T Consensus 241 ~DNiT~ilv~~~~~~ 255 (262)
T COG0631 241 PDNITVVLVRLNGEG 255 (262)
T ss_pred CCceEEEEEEeeccc
Confidence 999999999997655
No 9
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.60 E-value=3.2e-15 Score=115.80 Aligned_cols=72 Identities=54% Similarity=0.763 Sum_probs=61.8
Q ss_pred CceeccceeEEEeC-CCCCeEEEEecccccccCChHHHHHHHHcCC----cchHHHHHHHHHHHHHHHhhhhhhhhhhhc
Q 046755 33 PILLAEPTVSVQRL-YPEDQFLIFASDGLWEHLSNQEAVDIVHNCP----RNGVARKLVKAALHEAAKKREMRYSDLKKI 107 (155)
Q Consensus 33 p~v~~~Pdv~~~~l-~~~d~fliLaSDGLwd~l~~~ei~~~v~~~~----~~~~a~~L~~~a~~~~~~~~~~~~~~~~~~ 107 (155)
+++.++|++....+ .++| +||||||||||.++.+++.+++.... .+++|+.|++.|..
T Consensus 178 ~~~~~~~~~~~~~l~~~~d-~ill~SDG~~~~l~~~~i~~~~~~~~~~~~~~~~a~~l~~~a~~---------------- 240 (254)
T cd00143 178 PGVSAEPDVTVVKLTEDDD-FLILASDGLWDVLSNQEAVDIVRSELAKEDLQEAAQELVDLALR---------------- 240 (254)
T ss_pred CCEEcCCeEEEEEeCCCCc-EEEEECCCCeeccChHHHHHHHHHHhcccCHHHHHHHHHHHHHh----------------
Confidence 34789999999999 6777 89999999999999999999998754 56788888888874
Q ss_pred cccCCCccCCceEEEEEEc
Q 046755 108 DRGVRRHFHDDITVIILFL 126 (155)
Q Consensus 108 ~~~~~rg~~DNiTvivv~l 126 (155)
+++.||+|++++++
T Consensus 241 -----~~~~Dn~t~i~~~~ 254 (254)
T cd00143 241 -----RGSHDNITVVVVRL 254 (254)
T ss_pred -----CCCCCCEEEEEEeC
Confidence 46799999999975
No 10
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.58 E-value=8.9e-15 Score=118.22 Aligned_cols=109 Identities=36% Similarity=0.480 Sum_probs=78.6
Q ss_pred CccccccccccccccCCCCCCCCCCCCCCCCCCceeccceeEEEeCCC----CCeEEEEecccccccCChHHHHHHHHcC
Q 046755 1 ISRSIGDAYLKKVEFNREPLLPKFRLPEPFHKPILLAEPTVSVQRLYP----EDQFLIFASDGLWEHLSNQEAVDIVHNC 76 (155)
Q Consensus 1 vSRa~GD~~~K~~~~~~~~~~~~~~~~~~~~~p~v~~~Pdv~~~~l~~----~d~fliLaSDGLwd~l~~~ei~~~v~~~ 76 (155)
|||.|||..+|... .+...+||+++.|+|.+++|.+ .|+++|||||||||+++++|++.+++..
T Consensus 367 VsRGlGDH~Lkv~d------------snl~iKPFLssvPeV~V~dl~q~e~~~DdVvilatDGLWDVlSneeva~~Vrs~ 434 (493)
T KOG1323|consen 367 VSRGLGDHHLKVVD------------SNLSIKPFLSSVPEVRVYDLRQYEHLTDDVVILATDGLWDVLSNEEVALIVRSF 434 (493)
T ss_pred eccccCcceeeeec------------CCcccchhhhcCCeeEEEehhhhccCCCcEEEEecCchhhhcccHHHHHHHHHh
Confidence 69999999999654 2345679999999999999873 3559999999999999999999999874
Q ss_pred Cc----c------hHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCccCCceEEEEEEcCCc
Q 046755 77 PR----N------GVARKLVKAALHEAAKKREMRYSDLKKIDRGVRRHFHDDITVIILFLDSY 129 (155)
Q Consensus 77 ~~----~------~~a~~L~~~a~~~~~~~~~~~~~~~~~~~~~~~rg~~DNiTvivv~l~~~ 129 (155)
.. . .+|+.|+..|..... .+ .+.++++ +-|+.|||||.||-+...
T Consensus 435 L~~~dp~Dp~RYt~aaqdlva~arg~~k-~r------gWr~~n~-~lgSgDDIsVfVIPL~~~ 489 (493)
T KOG1323|consen 435 LPSTDPADPSRYTQAAQDLVAAARGQQK-DR------GWRMNNG-GLGSGDDISVFVIPLKYC 489 (493)
T ss_pred cCCCCCCChhHHHHHHHHHHHHhcCccC-CC------ceeccCC-CcCCCCceEEEEEeccCC
Confidence 22 1 245555555543211 11 1222222 347789999999998754
No 11
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.57 E-value=6.2e-15 Score=114.70 Aligned_cols=70 Identities=51% Similarity=0.776 Sum_probs=59.7
Q ss_pred CceeccceeEEEeC-CCCCeEEEEecccccccCChHHHHHHHHcCC----cchHHHHHHHHHHHHHHHhhhhhhhhhhhc
Q 046755 33 PILLAEPTVSVQRL-YPEDQFLIFASDGLWEHLSNQEAVDIVHNCP----RNGVARKLVKAALHEAAKKREMRYSDLKKI 107 (155)
Q Consensus 33 p~v~~~Pdv~~~~l-~~~d~fliLaSDGLwd~l~~~ei~~~v~~~~----~~~~a~~L~~~a~~~~~~~~~~~~~~~~~~ 107 (155)
|+++++|++...++ .++| +||||||||||+++++++.+++.... ...+++.|++.|..
T Consensus 181 ~~i~~~p~~~~~~~~~~~d-~ill~SDGv~~~l~~~~i~~~~~~~~~~~~~~~~~~~l~~~a~~---------------- 243 (255)
T smart00332 181 PYVSAEPDVTVVELTEKDD-FLILASDGLWDVLSNQEVVDIVRKHLSKSDPEEAAKRLIDLALA---------------- 243 (255)
T ss_pred CCeEeeeEEEEEEecCCCc-EEEEECCccccCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH----------------
Confidence 56999999999996 6767 99999999999999999999998753 45678888887764
Q ss_pred cccCCCccCCceEEEEE
Q 046755 108 DRGVRRHFHDDITVIIL 124 (155)
Q Consensus 108 ~~~~~rg~~DNiTvivv 124 (155)
++..||+|++||
T Consensus 244 -----~~~~Dn~T~ivv 255 (255)
T smart00332 244 -----RGSKDNITVIVV 255 (255)
T ss_pred -----cCCCCCeEEEEC
Confidence 567999999985
No 12
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=99.46 E-value=2.7e-13 Score=119.12 Aligned_cols=73 Identities=22% Similarity=0.323 Sum_probs=57.0
Q ss_pred ccceeEEEeCCCCCeEEEEecccccc--cCCh---HHHHHHHHcC-CcchHHHHHHHHHHHHHHHhhhhhhhhhhhcccc
Q 046755 37 AEPTVSVQRLYPEDQFLIFASDGLWE--HLSN---QEAVDIVHNC-PRNGVARKLVKAALHEAAKKREMRYSDLKKIDRG 110 (155)
Q Consensus 37 ~~Pdv~~~~l~~~d~fliLaSDGLwd--~l~~---~ei~~~v~~~-~~~~~a~~L~~~a~~~~~~~~~~~~~~~~~~~~~ 110 (155)
.+|++..+.+.++| +|||||||||| .+++ +++..++... ..+.++++|++.|+.
T Consensus 561 l~Pdi~~~~L~~gD-~lLLCSDGL~D~~~ve~~~~~~l~~il~~~~~l~~aa~~Li~~Al~------------------- 620 (645)
T PRK14559 561 IQPDIQFLEIEEDT-LLLLCSDGLSDNDLLETHWQTHLLPLLSSSANLDQGLNKLIDLANQ------------------- 620 (645)
T ss_pred ccceEEEEEcCCCC-EEEEECCCCCCCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-------------------
Confidence 47999999999887 89999999999 4554 3455666543 345688999999874
Q ss_pred CCCccCCceEEEEEEcCCccc
Q 046755 111 VRRHFHDDITVIILFLDSYLI 131 (155)
Q Consensus 111 ~~rg~~DNiTvivv~l~~~~~ 131 (155)
+|++||||+|||+++..+.
T Consensus 621 --~gg~DNITvIvV~l~~~p~ 639 (645)
T PRK14559 621 --YNGHDNITAILVRLKVRPQ 639 (645)
T ss_pred --cCCCCcEEEEEEEeccCCC
Confidence 6789999999999976543
No 13
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.27 E-value=1.3e-11 Score=99.12 Aligned_cols=92 Identities=21% Similarity=0.236 Sum_probs=68.5
Q ss_pred ceeccce---eEEEeCCCCCeEEEEecccccccCChHHHHHHHHcCC------cchHHHHHHHHHHHHHHHhhhhhhhhh
Q 046755 34 ILLAEPT---VSVQRLYPEDQFLIFASDGLWEHLSNQEAVDIVHNCP------RNGVARKLVKAALHEAAKKREMRYSDL 104 (155)
Q Consensus 34 ~v~~~Pd---v~~~~l~~~d~fliLaSDGLwd~l~~~ei~~~v~~~~------~~~~a~~L~~~a~~~~~~~~~~~~~~~ 104 (155)
|+.-.|+ +..++++++| +||||||||||+|.+++|+.++.... .+..|+.+++.|...+.+....+....
T Consensus 228 ~~~d~p~~ad~~~~~v~~GD-vIilATDGlfDNl~e~~Il~il~~~~~~~~~~lq~~A~~ia~~Ar~ls~d~~~~SPFA~ 306 (330)
T KOG1379|consen 228 YISDVPDSADVTSFDVQKGD-VIILATDGLFDNLPEKEILSILKGLDARGNLDLQVTAQKIAEKARELSRDPKFQSPFAQ 306 (330)
T ss_pred cccCCccccceEEEeccCCC-EEEEecccccccccHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhccCcCcCChHHH
Confidence 4555565 5688999999 99999999999999999999997642 256889999999888766544444333
Q ss_pred hhcc--ccCCCccCCceEEEEEEc
Q 046755 105 KKID--RGVRRHFHDDITVIILFL 126 (155)
Q Consensus 105 ~~~~--~~~~rg~~DNiTvivv~l 126 (155)
...+ -....|..||||+++..+
T Consensus 307 ~Ar~~g~~~~gGK~DdITvvls~v 330 (330)
T KOG1379|consen 307 AAREHGFKAYGGKPDDITVVLSSV 330 (330)
T ss_pred HHHHhCcccCCCCcccEEEEEecC
Confidence 3222 223466789999999753
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.19 E-value=3.8e-11 Score=107.46 Aligned_cols=77 Identities=34% Similarity=0.484 Sum_probs=68.5
Q ss_pred CceeccceeEEEeCCCCCeEEEEecccccccCChHHHHHHHHcCCcc-hHHHHHHHHHHHHHHHhhhhhhhhhhhccccC
Q 046755 33 PILLAEPTVSVQRLYPEDQFLIFASDGLWEHLSNQEAVDIVHNCPRN-GVARKLVKAALHEAAKKREMRYSDLKKIDRGV 111 (155)
Q Consensus 33 p~v~~~Pdv~~~~l~~~d~fliLaSDGLwd~l~~~ei~~~v~~~~~~-~~a~~L~~~a~~~~~~~~~~~~~~~~~~~~~~ 111 (155)
|.|.+.|+|....|++.|+|||+|+-+||++|+-+++++.++..... .+|++|++.|..+
T Consensus 698 P~v~p~Phv~~~~Lt~qdE~LIvgn~~lW~~Lsid~a~~~vRn~~dpL~AAkKL~d~AqSY------------------- 758 (1081)
T KOG0618|consen 698 PHVLPDPHVSVVILTEQDEFLIVGNKQLWSVLSIDTAVDAVRNVEDPLLAAKKLCDLAQSY------------------- 758 (1081)
T ss_pred ccccCCCceeeEecccCceEEEEcchHHhhhccHHHHHHHHhcCCchHHHHHHHHHHHHhc-------------------
Confidence 68999999999999999999999999999999999999999965433 4889999999875
Q ss_pred CCccCCceEEEEEEcCCcc
Q 046755 112 RRHFHDDITVIILFLDSYL 130 (155)
Q Consensus 112 ~rg~~DNiTvivv~l~~~~ 130 (155)
|+.|||+|+||++....
T Consensus 759 --gc~~nv~vlVv~l~~~~ 775 (1081)
T KOG0618|consen 759 --GCAENVSVLVVRLNHLE 775 (1081)
T ss_pred --ccccCeeEEEEEeecch
Confidence 56999999999997643
No 15
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=98.32 E-value=1.7e-06 Score=78.18 Aligned_cols=70 Identities=23% Similarity=0.329 Sum_probs=50.7
Q ss_pred cceeEEEeCCCCCeEEEEecccccccCChHH-----HHHHHHcC---CcchHHHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 046755 38 EPTVSVQRLYPEDQFLIFASDGLWEHLSNQE-----AVDIVHNC---PRNGVARKLVKAALHEAAKKREMRYSDLKKIDR 109 (155)
Q Consensus 38 ~Pdv~~~~l~~~d~fliLaSDGLwd~l~~~e-----i~~~v~~~---~~~~~a~~L~~~a~~~~~~~~~~~~~~~~~~~~ 109 (155)
+++....++.++| +|+|+||||||..++++ +.+++... .+++.++.+++++.+...
T Consensus 686 ~~~~~~~~L~~GD-~Lll~SDGv~E~~~~~~~~~~~l~~~l~~~~~~~p~ela~~Il~~a~~~~~--------------- 749 (764)
T TIGR02865 686 DVELVRKKLKNGD-LIVMVSDGVLEGEKEVEGKVLWLVRKLKETNTNDPEEIAEYLLEKAKELRS--------------- 749 (764)
T ss_pred ccceEEEEeCCCC-EEEEECCCCCcCCcccccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC---------------
Confidence 3555678899999 89999999999887533 66777642 345677788877764311
Q ss_pred cCCCccCCceEEEEEEc
Q 046755 110 GVRRHFHDDITVIILFL 126 (155)
Q Consensus 110 ~~~rg~~DNiTvivv~l 126 (155)
....||+|++++++
T Consensus 750 ---~~~~DD~Tvlvirv 763 (764)
T TIGR02865 750 ---GKIKDDMTVIVAKV 763 (764)
T ss_pred ---CCCCCCeEEEEEEe
Confidence 12489999999986
No 16
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=98.22 E-value=5.5e-06 Score=61.87 Aligned_cols=72 Identities=22% Similarity=0.357 Sum_probs=43.9
Q ss_pred ccceeEEEeCCCCCeEEEEecccccccCChH-------HHHHHHHcCC---cchHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 046755 37 AEPTVSVQRLYPEDQFLIFASDGLWEHLSNQ-------EAVDIVHNCP---RNGVARKLVKAALHEAAKKREMRYSDLKK 106 (155)
Q Consensus 37 ~~Pdv~~~~l~~~d~fliLaSDGLwd~l~~~-------ei~~~v~~~~---~~~~a~~L~~~a~~~~~~~~~~~~~~~~~ 106 (155)
.+.....+++.++| .|+|+||||+|....+ .+.+++.+.. .++.++.+++.+....
T Consensus 112 ~~~~~~~~~l~~gd-~l~l~TDGl~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~------------- 177 (193)
T PF07228_consen 112 IDYQEQEIQLEPGD-RLLLYTDGLFEALNEDGEFFGEERLLELLDENRGLSPQEIIDALLEAIDRFG------------- 177 (193)
T ss_dssp TCEEEEEEE--TTE-EEEEECHHHCTTTCHHCHHCCCHHHHHHHHCHTTS-HHHHHHHHHHHHHHHT-------------
T ss_pred ccccceEEEecccc-EEEEeCCChhhccCCccchhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHhc-------------
Confidence 33445677888998 8999999999998543 3456666432 2334444444443310
Q ss_pred ccccCCCccCCceEEEEEEcC
Q 046755 107 IDRGVRRHFHDDITVIILFLD 127 (155)
Q Consensus 107 ~~~~~~rg~~DNiTvivv~l~ 127 (155)
.....||+|+++++++
T Consensus 178 -----~~~~~DD~tvl~~~~~ 193 (193)
T PF07228_consen 178 -----KGPLRDDITVLVIRRQ 193 (193)
T ss_dssp -----TSSTSS-EEEEEEEE-
T ss_pred -----CCCCCCceEEEEEEEC
Confidence 2356899999999874
No 17
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=97.87 E-value=3.5e-05 Score=57.69 Aligned_cols=51 Identities=22% Similarity=0.346 Sum_probs=39.1
Q ss_pred cceeEEEeCCCCCeEEEEecccccccCChHHHHHHHHcCC---cchHHHHHHHHH
Q 046755 38 EPTVSVQRLYPEDQFLIFASDGLWEHLSNQEAVDIVHNCP---RNGVARKLVKAA 89 (155)
Q Consensus 38 ~Pdv~~~~l~~~d~fliLaSDGLwd~l~~~ei~~~v~~~~---~~~~a~~L~~~a 89 (155)
++++..+++.++| .|+|+||||||.++.+++.+++.+.. .++.++++++++
T Consensus 138 ~~~~~~~~l~~gd-~l~l~TDGl~e~~~~~~l~~~l~~~~~~~~~~~~~~i~~~~ 191 (193)
T smart00331 138 EVDVRELTLEPGD-LLLLYTDGLTEARNPERLEELLEELLGSPPAEIAQRILEEL 191 (193)
T ss_pred cceeEEEeeCCCC-EEEEECCCccccCChHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 4667788899999 88899999999999999999998754 233444444443
No 18
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=97.35 E-value=0.00086 Score=55.61 Aligned_cols=70 Identities=21% Similarity=0.376 Sum_probs=45.9
Q ss_pred eeEEEeCCCCCeEEEEecccccc-------cCChHHHHHHHHcC---CcchHHHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 046755 40 TVSVQRLYPEDQFLIFASDGLWE-------HLSNQEAVDIVHNC---PRNGVARKLVKAALHEAAKKREMRYSDLKKIDR 109 (155)
Q Consensus 40 dv~~~~l~~~d~fliLaSDGLwd-------~l~~~ei~~~v~~~---~~~~~a~~L~~~a~~~~~~~~~~~~~~~~~~~~ 109 (155)
.+...++.++| +++|.|||+.| .+..+...+++... ..++.++.+.+...+...
T Consensus 287 ~~~~~~l~~gd-~lvl~tDGv~Ea~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~~l~~~~~--------------- 350 (367)
T COG2208 287 EVASLQLEPGD-LLVLYTDGVTEARNSDGEFFGLERLLKILGRLLGQPAEEILEAILESLEELQG--------------- 350 (367)
T ss_pred hheeEEecCCC-EEEEEcCCeeeeecCCccEecHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhC---------------
Confidence 34567778888 99999999999 55566677777642 223444454444443221
Q ss_pred cCCCccCCceEEEEEEcC
Q 046755 110 GVRRHFHDDITVIILFLD 127 (155)
Q Consensus 110 ~~~rg~~DNiTvivv~l~ 127 (155)
.....||||++++++.
T Consensus 351 --~~~~~DDiTll~lk~~ 366 (367)
T COG2208 351 --DQIQDDDITLLVLKVK 366 (367)
T ss_pred --CccccCceEEEEEEec
Confidence 1234788999999875
No 19
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=96.60 E-value=0.0021 Score=48.69 Aligned_cols=36 Identities=22% Similarity=0.467 Sum_probs=21.3
Q ss_pred eeEEEeCCCCCeEEEEecccccccCChHH-HHHHHHcC
Q 046755 40 TVSVQRLYPEDQFLIFASDGLWEHLSNQE-AVDIVHNC 76 (155)
Q Consensus 40 dv~~~~l~~~d~fliLaSDGLwd~l~~~e-i~~~v~~~ 76 (155)
++..+++.++| .|+|||||||+.+...+ +..++.+.
T Consensus 158 ~~~~~~~~~~d-~ilL~SDG~~~~l~~~~~~~~~l~~~ 194 (212)
T PF13672_consen 158 QYGSIPLEEGD-VILLCSDGVWDNLRSYEDLEQFLKDL 194 (212)
T ss_dssp EEEEEE--TT--EEEEE-HHHHTTS-HHHHHHHH----
T ss_pred eEEEEEcCCCC-EEEEECcCccccCCCHHHHHHHhhhc
Confidence 56667777888 78899999999998665 55666543
No 20
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=68.29 E-value=3.8 Score=26.38 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=17.6
Q ss_pred eCCCCCeEEEEecccccccCChHHHH
Q 046755 45 RLYPEDQFLIFASDGLWEHLSNQEAV 70 (155)
Q Consensus 45 ~l~~~d~fliLaSDGLwd~l~~~ei~ 70 (155)
++....+-+++|+||+|=.+....+.
T Consensus 22 ~l~~~G~Rllva~nGv~lEv~r~WL~ 47 (72)
T PF09436_consen 22 PLERPGHRLLVASNGVFLEVRRPWLH 47 (72)
T ss_pred ccccCCcEEEEecCcEEEEEechHHH
Confidence 44434446789999999877655443
No 21
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=51.25 E-value=83 Score=22.06 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=32.9
Q ss_pred CCceeccceeEEEeCCCCCeEEEEecccccc-------cCChHHHHHHHHc
Q 046755 32 KPILLAEPTVSVQRLYPEDQFLIFASDGLWE-------HLSNQEAVDIVHN 75 (155)
Q Consensus 32 ~p~v~~~Pdv~~~~l~~~d~fliLaSDGLwd-------~l~~~ei~~~v~~ 75 (155)
.-+|+..|+|.......++-|.|++..-.-| .+++++|--++.+
T Consensus 36 ~~~Vi~~P~V~~m~~~g~~tY~I~Ge~~~e~~~~~~~~~i~~edI~lv~~q 86 (115)
T PRK06369 36 KEIVFENPQVTVMDAQGQKTYQIVGEPEEVEKEAEKEVEIPEEDIELVAEQ 86 (115)
T ss_pred EEEEEcCCeEEEEecCCCcEEEEEeccEEeeccccccCCCCHHHHHHHHHH
Confidence 4579999999988888778899999877754 3566666555544
No 22
>COG2168 DsrH Uncharacterized conserved protein involved in oxidation of intracellular sulfur [Inorganic ion transport and metabolism]
Probab=48.19 E-value=18 Score=24.57 Aligned_cols=35 Identities=17% Similarity=0.366 Sum_probs=27.7
Q ss_pred EEEeCCCCCeEEEEecccccccCChHHHHHHHHcCC
Q 046755 42 SVQRLYPEDQFLIFASDGLWEHLSNQEAVDIVHNCP 77 (155)
Q Consensus 42 ~~~~l~~~d~fliLaSDGLwd~l~~~ei~~~v~~~~ 77 (155)
...-++++| -++|..||++=.+...+..+.++..+
T Consensus 18 ~l~~l~~~D-~vlL~qdGV~aAl~~~~~~~sl~~~p 52 (96)
T COG2168 18 LLRLLTEGD-AVLLLQDGVYAALKGNRYLASLRESP 52 (96)
T ss_pred HHHHhcccC-eEEEEcccchhhhcCcHHHHHHhcCc
Confidence 344567888 67799999999998888888887664
No 23
>PF14014 DUF4230: Protein of unknown function (DUF4230)
Probab=35.43 E-value=1.6e+02 Score=20.83 Aligned_cols=41 Identities=7% Similarity=0.163 Sum_probs=27.8
Q ss_pred eeccceeEEEeCCCCCeEEEEecccccccCChHHHHHHHHc
Q 046755 35 LLAEPTVSVQRLYPEDQFLIFASDGLWEHLSNQEAVDIVHN 75 (155)
Q Consensus 35 v~~~Pdv~~~~l~~~d~fliLaSDGLwd~l~~~ei~~~v~~ 75 (155)
..+.|.+..+.++.+.--++-...|+|..++.++..++...
T Consensus 74 ~LP~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (157)
T PF14014_consen 74 TLPPPEILSVEIDEDSIKVYDEKGGWFNPITPEDQNEAQKE 114 (157)
T ss_pred ECCCcEEeeeecCccceEEEEccCCccCCCCHHHHHHHHHH
Confidence 44566677677776553444677888888888877666654
No 24
>PRK03072 heat shock protein HtpX; Provisional
Probab=34.84 E-value=48 Score=26.70 Aligned_cols=41 Identities=10% Similarity=0.215 Sum_probs=27.5
Q ss_pred ceeccceeEEEeCC--CCCeEEEEecccccccCChHHHHHHHHc
Q 046755 34 ILLAEPTVSVQRLY--PEDQFLIFASDGLWEHLSNQEAVDIVHN 75 (155)
Q Consensus 34 ~v~~~Pdv~~~~l~--~~d~fliLaSDGLwd~l~~~ei~~~v~~ 75 (155)
||...+...-+-.. +.. .+|..||||.+.++.+|+..++.+
T Consensus 91 yv~~~~~~NAFa~G~~~~~-~~v~vt~gLl~~l~~~El~aVlAH 133 (288)
T PRK03072 91 YISPTAAPNAFATGRNPRN-AAVCCTEGILQILNERELRGVLGH 133 (288)
T ss_pred EEecCCCCceEEecCCCCC-cEEEecHHHHHhCCHHHHHHHHHH
Confidence 44444444433332 223 567889999999999999888865
No 25
>PF07394 DUF1501: Protein of unknown function (DUF1501); InterPro: IPR010869 This family contains a number of hypothetical bacterial proteins of unknown function approximately 400 residues long.
Probab=30.76 E-value=3e+02 Score=22.80 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=17.8
Q ss_pred CccCCceEEEEE-EcCCcccccCC
Q 046755 113 RHFHDDITVIIL-FLDSYLISRSS 135 (155)
Q Consensus 113 rg~~DNiTvivv-~l~~~~~~~~~ 135 (155)
+|..|+++|++. .|...+..+.+
T Consensus 287 ~g~~d~t~vv~~SEFGRt~~~N~~ 310 (392)
T PF07394_consen 287 RGLLDDTLVVTMSEFGRTPRENGS 310 (392)
T ss_pred cCCcCceEEEEeeecCCCcccCCC
Confidence 567899888887 68887777666
No 26
>TIGR03735 PRTRC_A PRTRC system protein A. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated protein A.
Probab=29.08 E-value=38 Score=25.94 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=17.9
Q ss_pred CCCeEEEEecccccccCChHHHHHHH
Q 046755 48 PEDQFLIFASDGLWEHLSNQEAVDIV 73 (155)
Q Consensus 48 ~~d~fliLaSDGLwd~l~~~ei~~~v 73 (155)
.+. -+++|+||||=.+.-..+.-+.
T Consensus 25 ~g~-r~~~a~~G~~lev~r~wl~~~~ 49 (192)
T TIGR03735 25 PGH-RFIVAADGVWREVRRPWLHAIQ 49 (192)
T ss_pred CCc-EEEEecCcEEEEEecHHHHHHH
Confidence 455 6679999999887776654433
No 27
>PRK05457 heat shock protein HtpX; Provisional
Probab=28.16 E-value=86 Score=25.23 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.7
Q ss_pred EEEEecccccccCChHHHHHHHHc
Q 046755 52 FLIFASDGLWEHLSNQEAVDIVHN 75 (155)
Q Consensus 52 fliLaSDGLwd~l~~~ei~~~v~~ 75 (155)
-+|+-|+||++.|+++|+..++.+
T Consensus 117 ~~V~vt~gLl~~L~~~El~aVlAH 140 (284)
T PRK05457 117 SLVAVSTGLLQNMSRDEVEAVLAH 140 (284)
T ss_pred eEEEeehHHhhhCCHHHHHHHHHH
Confidence 678999999999999999988865
No 28
>PRK02391 heat shock protein HtpX; Provisional
Probab=26.36 E-value=46 Score=26.99 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=20.9
Q ss_pred EEEEecccccccCChHHHHHHHHc
Q 046755 52 FLIFASDGLWEHLSNQEAVDIVHN 75 (155)
Q Consensus 52 fliLaSDGLwd~l~~~ei~~~v~~ 75 (155)
-+|+-||||.+.++++|+..++.+
T Consensus 116 ~~V~vt~gLl~~L~~~El~aVlaH 139 (296)
T PRK02391 116 AVVCVTTGLMRRLDPDELEAVLAH 139 (296)
T ss_pred cEEEecHHHHhhCCHHHHHHHHHH
Confidence 567899999999999999888765
No 29
>PRK03982 heat shock protein HtpX; Provisional
Probab=25.92 E-value=49 Score=26.49 Aligned_cols=24 Identities=13% Similarity=0.365 Sum_probs=20.6
Q ss_pred EEEEecccccccCChHHHHHHHHc
Q 046755 52 FLIFASDGLWEHLSNQEAVDIVHN 75 (155)
Q Consensus 52 fliLaSDGLwd~l~~~ei~~~v~~ 75 (155)
-.|.-||||.+.++++|+..++.+
T Consensus 108 ~~V~vt~gLl~~l~~~El~AVlAH 131 (288)
T PRK03982 108 AVVAVTEGILNLLNEDELEGVIAH 131 (288)
T ss_pred eEEEeehHHHhhCCHHHHHHHHHH
Confidence 456789999999999999888865
No 30
>PRK02870 heat shock protein HtpX; Provisional
Probab=24.41 E-value=94 Score=25.81 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=20.8
Q ss_pred EEEEecccccccCChHHHHHHHHc
Q 046755 52 FLIFASDGLWEHLSNQEAVDIVHN 75 (155)
Q Consensus 52 fliLaSDGLwd~l~~~ei~~~v~~ 75 (155)
-.|..||||.+.++++|+..++.+
T Consensus 156 ~~Ivvt~GLL~~L~~dEL~aVlAH 179 (336)
T PRK02870 156 AMVAITTGLLEKLDRDELQAVMAH 179 (336)
T ss_pred cEEEEehHHhhhCCHHHHHHHHHH
Confidence 467899999999999999888765
No 31
>PRK01345 heat shock protein HtpX; Provisional
Probab=23.74 E-value=1e+02 Score=25.18 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=20.8
Q ss_pred EEEEecccccccCChHHHHHHHHc
Q 046755 52 FLIFASDGLWEHLSNQEAVDIVHN 75 (155)
Q Consensus 52 fliLaSDGLwd~l~~~ei~~~v~~ 75 (155)
-.|+-||||.+.++++|+..++.+
T Consensus 107 ~~V~vt~gLL~~L~~dEL~aVlAH 130 (317)
T PRK01345 107 AAVAATTGLLQRLSPEEVAGVMAH 130 (317)
T ss_pred eEEEechHHHhhCCHHHHHHHHHH
Confidence 467899999999999999888765
No 32
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=23.30 E-value=78 Score=24.68 Aligned_cols=28 Identities=18% Similarity=0.426 Sum_probs=20.6
Q ss_pred CCCCeEEEEecccccccCChHHHHHHHHcC
Q 046755 47 YPEDQFLIFASDGLWEHLSNQEAVDIVHNC 76 (155)
Q Consensus 47 ~~~d~fliLaSDGLwd~l~~~ei~~~v~~~ 76 (155)
.++|++|||||-| +.-..|.+.+++.+.
T Consensus 39 ~pGdRvlvl~taG--NLA~tQaV~~ll~e~ 66 (255)
T COG3484 39 LPGDRVLVLCTAG--NLAITQAVLHLLDER 66 (255)
T ss_pred CCCceEEEEEecC--ccHHHHHHHHHHHHH
Confidence 4788999999999 444566677776553
No 33
>PRK03001 M48 family peptidase; Provisional
Probab=21.51 E-value=60 Score=25.92 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.3
Q ss_pred EEEecccccccCChHHHHHHHHc
Q 046755 53 LIFASDGLWEHLSNQEAVDIVHN 75 (155)
Q Consensus 53 liLaSDGLwd~l~~~ei~~~v~~ 75 (155)
-|+-||||.+.++++|+..++.+
T Consensus 108 ~Ivvt~gLl~~l~~~El~aVlAH 130 (283)
T PRK03001 108 AVAATTGILRVLSEREIRGVMAH 130 (283)
T ss_pred EEEecHHHHhhCCHHHHHHHHHH
Confidence 56889999999999999888865
No 34
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]
Probab=21.50 E-value=61 Score=25.52 Aligned_cols=41 Identities=17% Similarity=0.270 Sum_probs=28.4
Q ss_pred ceeccceeEEEeCCC--CCeEEEEecccccccCChHHHHHHHHc
Q 046755 34 ILLAEPTVSVQRLYP--EDQFLIFASDGLWEHLSNQEAVDIVHN 75 (155)
Q Consensus 34 ~v~~~Pdv~~~~l~~--~d~fliLaSDGLwd~l~~~ei~~~v~~ 75 (155)
+|...|...-+.+.. .. =.|.-|+||.+.++++|+..++.+
T Consensus 121 ~i~~~~~~NAFa~g~~~~~-~~V~vt~gLl~~l~~dEl~aVlaH 163 (302)
T COG0501 121 YILETPQPNAFALGGGPKN-GRVVVTTGLLDLLNDDELEAVLAH 163 (302)
T ss_pred EEecCCCccceecCCCCCC-eeEEecHHHHhhCCHHHHHHHHHH
Confidence 344455555444443 23 356889999999999999988865
No 35
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=21.36 E-value=1.1e+02 Score=17.77 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=15.9
Q ss_pred ccCChHHHHHHHHcCCcchHHHHH
Q 046755 62 EHLSNQEAVDIVHNCPRNGVARKL 85 (155)
Q Consensus 62 d~l~~~ei~~~v~~~~~~~~a~~L 85 (155)
++|+.+|+.++-........++.|
T Consensus 1 ~fLT~~El~elTG~k~~~~Q~~~L 24 (47)
T PF13986_consen 1 EFLTDEELQELTGYKRPSKQIRWL 24 (47)
T ss_pred CCCCHHHHHHHHCCCCHHHHHHHH
Confidence 478999999998765433334333
No 36
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=20.82 E-value=1.3e+02 Score=19.40 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=18.2
Q ss_pred EEEecccccccCChHHHHHHHHc
Q 046755 53 LIFASDGLWEHLSNQEAVDIVHN 75 (155)
Q Consensus 53 liLaSDGLwd~l~~~ei~~~v~~ 75 (155)
+|+++-+.+.+++++++..++++
T Consensus 70 ~v~~~~~~~~~~~~~~~~~ll~~ 92 (101)
T PF13649_consen 70 LVVCSGLSLHHLSPEELEALLRR 92 (101)
T ss_dssp EEEE-TTGGGGSSHHHHHHHHHH
T ss_pred EEEEcCCccCCCCHHHHHHHHHH
Confidence 66787887899999998888764
No 37
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=20.61 E-value=91 Score=25.68 Aligned_cols=25 Identities=36% Similarity=0.691 Sum_probs=17.1
Q ss_pred EEEeCCCCCeEEEEecccccccCChHH
Q 046755 42 SVQRLYPEDQFLIFASDGLWEHLSNQE 68 (155)
Q Consensus 42 ~~~~l~~~d~fliLaSDGLwd~l~~~e 68 (155)
..+.+. |..|+|+.||+|..|=+++
T Consensus 47 avI~v~--~~~lliaadGi~g~l~~~d 71 (324)
T COG2144 47 AVIRVG--DGKLLIAADGIWGKLIDAD 71 (324)
T ss_pred EEEeeC--CcEEEEecCCccccccccC
Confidence 344444 4589999999996655443
Done!