BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046757
(445 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 78/407 (19%), Positives = 143/407 (35%), Gaps = 60/407 (14%)
Query: 66 IEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAG 125
+ +P+Q D TG+++ ++ TP ++ ++VD W++C
Sbjct: 10 VVLPVQ--NDGSTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYS----------- 56
Query: 126 SRRRVFKADLSSSFKTIPCSSDMCKSEFARLFSLTFCPTPTSPCAYDYRYADGSAAK--- 182
S +++ C S C A CP + P + S
Sbjct: 57 ----------SKTYQAPFCHSTQCSR--ANTHQCLSCPAASRPGCHKNTCGLMSTNPITQ 104
Query: 183 ----GIFGKERVTIGLENGGKTR------IEEVVMGCSDT--IQGQIFAEADGVLGLSYD 230
G G++ + I G + + + + C+ + +Q + GV GL +
Sbjct: 105 QTGLGELGEDVLAIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGHA 164
Query: 231 KYSFAQKVTNGSTFARGKFAYCLVDHLSHKNVSNYLIFGEESKRMRM------------- 277
S ++ + R +F CL + + K +IFG+ MR
Sbjct: 165 PISLPNQLASHFGLQR-QFTTCLSRYPTSKGA---IIFGDAPNNMRQFQNQDIFHDLAFT 220
Query: 278 RMRYTLLGLIGPDYXXXXXXXXXXXXMLNIPSQVWDFNRGGGTAFDSGTTLTFLAEPAYK 337
+ TL G + I S + + GGT + T L + Y+
Sbjct: 221 PLTITLQGEYNVRVNSIRINQHSVFPLNKISSTIVG-STSGGTMISTSTPHMVLQQSVYQ 279
Query: 338 PVVAALEMSLSRYQRLKRDAPFEYCFNSTGFDESSVPKLVFHFADGARFEPHTKSYIIRV 397
L + ++K APF CFNS + LV +G + + +++
Sbjct: 280 AFTQVFAQQLPKQAQVKSVAPFGLCFNSNKINAYPSVDLVMDKPNGPVWRISGEDLMVQA 339
Query: 398 AHGIRCLGFVS-ATWPGAS-AIGNIMQQNYFWEFDLLKDRLGFAPST 442
G+ CLG ++ P A +G + FDL + R+GF+ S+
Sbjct: 340 QPGVTCLGVMNGGMQPRAEITLGARQLEENLVVFDLARSRVGFSTSS 386
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor I
pdb|1T6G|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
pdb|1T6G|B Chain B, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
Length = 381
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 82/402 (20%), Positives = 138/402 (34%), Gaps = 76/402 (18%)
Query: 74 RDYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKA 133
+D T +Y + G L++D W +C
Sbjct: 9 KDPATSLYTIPFHDGA-----SLVLDVAGPLVWSTC------------------------ 39
Query: 134 DLSSSFKTIPCSSDMCKSEFARLFSLTFCPTPT-------SPC-AYDYRYADGSAAKGIF 185
D IPCSS C A + CP P+ PC AY Y G+ A G
Sbjct: 40 DGGQPPAEIPCSSPTCL--LANAYPAPGCPAPSCGSDKHDKPCTAYPYNPVSGACAAGSL 97
Query: 186 GKERVTIGLENGGK--TRIE-EVVMGCSDT-IQGQIFAEADGVLGLSYDKYSFAQKVTNG 241
R +G K +++ V+ C+ + + + + GV GL+ + +V +
Sbjct: 98 SHTRFVANTTDGSKPVSKVNVGVLAACAPSKLLASLPRGSTGVAGLANSGLALPAQVASA 157
Query: 242 STFARGKFAYCLVDHLSHKNVSNYLIFGEES---KRMRMRMRYTLLGLIG--PDYXXXXX 296
A +F CL IFG + M YT L G P +
Sbjct: 158 QKVAN-RFLLCL-----PTGGPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISAR 211
Query: 297 XXXXXXXMLNIPSQVWDFNRGGGTAFDSGTTLTFLAEPAYKPVVAALEMSLSRY------ 350
+ +P GG + L Y+P++ A +L+
Sbjct: 212 SIVVGDTRVPVPEGALAT---GGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAP 268
Query: 351 --QRLKRDAPFEYCFNSTGFDES----SVPKLVFHFADGARFEPHTKSYIIRVAHGIRCL 404
+ ++ APF C+++ + +VP + G+ + K+ ++ V G C+
Sbjct: 269 VARAVEAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSDWTMTGKNSMVDVKQGTACV 328
Query: 405 GFVS----ATWPG---ASAIGNIMQQNYFWEFDLLKDRLGFA 439
FV A G A +G +++ +FD+ K RLGF+
Sbjct: 329 AFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFS 370
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
pdb|3HD8|C Chain C, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
Length = 389
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 82/400 (20%), Positives = 131/400 (32%), Gaps = 74/400 (18%)
Query: 74 RDYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKA 133
+D T +Y + G L++D W +C P+
Sbjct: 11 KDTATSLYTIPFHDGA-----SLVLDVAGLLVWSTCEGGQSPA----------------- 48
Query: 134 DLSSSFKTIPCSSDMCKSEFARLFSLTFCPTPT-------SPC-AYDYRYADGSAAKGIF 185
I CSS C A + CP P+ PC AY G+ A G
Sbjct: 49 -------EIACSSPTCL--LANAYPAPGCPAPSCGSDRHDKPCTAYPSNPVTGACAAGSL 99
Query: 186 GKERVTIGLENGGKTRIE---EVVMGCSDT-IQGQIFAEADGVLGLSYDKYSFAQKVTNG 241
R +G K E V+ C+ + + + + GV GL+ + +V +
Sbjct: 100 FHTRFAANTTDGNKPVSEVNVRVLAACAPSKLLASLPRGSTGVAGLAGSGLALPSQVASA 159
Query: 242 STFARGKFAYCLVDHLSHKNVSNYLIFGEES---KRMRMRMRYTLLGLIGPDYXXXXXXX 298
KF CL IFG + M YT L G
Sbjct: 160 QKVPN-KFLLCL-----PTGGPGVAIFGGGPLPWPQFTQSMDYTPLVAKGGSPAHYISAR 213
Query: 299 XXXXXMLNIPSQVWDFNRGGGTAFDSGTTLTFLAEPAYKPVVAALEMSLSRY-------- 350
+P GG + L Y+P+V A +L+
Sbjct: 214 SIKVENTRVPISERALATGG-VMLSTRLPYVLLRRDVYRPLVDAFTKALAAQPANGAPVA 272
Query: 351 QRLKRDAPFEYCFNSTGFDESS----VPKLVFHFADGARFEPHTKSYIIRVAHGIRCLGF 406
+ +K APFE C+++ + VP ++ G+ + K+ ++ V G C+ F
Sbjct: 273 RAVKPVAPFELCYDTKTLGNNPGGYWVPNVLLELDGGSDWAMTGKNSMVDVKPGTACVAF 332
Query: 407 V--------SATWPGASAIGNIMQQNYFWEFDLLKDRLGF 438
V + P A +G +++ +FD+ K RLGF
Sbjct: 333 VEMKGVDAGDGSAP-AVILGGAQMEDFVLDFDMEKKRLGF 371
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 92/412 (22%), Positives = 146/412 (35%), Gaps = 58/412 (14%)
Query: 64 SAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTI 123
SA+ +P++ +D T Y I TP L+VD G F W+ C + S T
Sbjct: 7 SALVVPVK--KDASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQNYVSS-----TY 59
Query: 124 AGSRRRVFKADLSSSFKTIPCSSDM---CKSEFARLFSLTFCPTPTSPCAYDYRYADGSA 180
R R + LS S C + C + +F P +P G
Sbjct: 60 RPVRCRTSQCSLSGSIACGDCFNGPRPGCNNNTCGVF-------PENPVI--NTATGGEV 110
Query: 181 AKGIFGKERVTIGLENGGKTRIEEVVMGCSDTIQGQIFAE-ADGVLGLSYDKYSFAQKVT 239
A+ + E T G +G + + C+ T Q A G+ GL + + +
Sbjct: 111 AEDVVSVES-TDGSSSGRVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFA 169
Query: 240 NGSTFARGKFAYCLVDHLSHKNVSNYLIFGEESKRM-------RMRMRYTLLGLIGPDYX 292
+ +F R KFA CL S +V +IFG + + YT L L P
Sbjct: 170 SAFSFKR-KFAMCLSGSTSSNSV---IIFGNDPYTFLPNIIVSDKTLTYTPL-LTNPVST 224
Query: 293 XXXXXXXXXXX-------MLNIPSQVWDFNRG---------GGTAFDSGTTLTFLAEPAY 336
+ I S++ N GGT + T L Y
Sbjct: 225 SATSTQGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIY 284
Query: 337 KPVVAAL--EMSLSRYQRLKRDAPFEYCFNSTGFDES----SVPKLVFHF-ADGARFEPH 389
K V A E + R+ APF CF++ + SVP + ++ +
Sbjct: 285 KAVTEAFIKESAARNITRVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTIT 344
Query: 390 TKSYIIRVAHGIRCLGFVS--ATWPGASAIGNIMQQNYFWEFDLLKDRLGFA 439
+ ++ + + CLG V + + IG ++ +FDL R+GF+
Sbjct: 345 GSNSMVYINDNVVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFS 396
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 94/412 (22%), Positives = 145/412 (35%), Gaps = 58/412 (14%)
Query: 64 SAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTI 123
SA+ +P++ +D T Y I TP L+VD G F W+ C + S T
Sbjct: 7 SALVVPVK--KDASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQNYVSS-----TY 59
Query: 124 AGSRRRVFKADLSSSFKTIPCSSDM---CKSEFARLFSLTFCPTPTSPCAYDYRYADGSA 180
R R + LS S C + C + +F P +P G
Sbjct: 60 RPVRCRTSQCSLSGSIACGDCFNGPRPGCNNNTCGVF-------PENPVI--NTATGGEV 110
Query: 181 AKGIFGKERVTIGLENGGKTRIEEVVMGCSDTIQGQIFAE-ADGVLGLSYDKYSFAQKVT 239
A+ + E T G +G + + C+ T Q A G+ GL + + +
Sbjct: 111 AEDVVSVES-TDGSSSGRVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFA 169
Query: 240 NGSTFARGKFAYCLVDHLSHKNVSNYLIFGEESKRM-------RMRMRYTLLGLIGPDYX 292
+ +F R KFA CL S +V +IFG + + YT L L P
Sbjct: 170 SAFSFKR-KFAMCLSGSTSSNSV---IIFGNDPYTFLPNIIVSDKTLTYTPL-LTNPVST 224
Query: 293 XXXXXXXXXXX-------MLNIPSQVWDFNRG---------GGTAFDSGTTLTFLAEPAY 336
+ I S++ N GGT + T L Y
Sbjct: 225 SATSTQGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIY 284
Query: 337 KPVVAAL--EMSLSRYQRLKRDAPFEYCFNSTGFDES----SVPKLVFHFADGARFEPHT 390
K V A E + R+ APF CF++ + SVP + + T
Sbjct: 285 KAVTEAFIKESAARNITRVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTIT 344
Query: 391 KS-YIIRVAHGIRCLGFVS--ATWPGASAIGNIMQQNYFWEFDLLKDRLGFA 439
S ++ + + CLG V + + IG ++ +FDL R+GF+
Sbjct: 345 GSNSMVYINDNVVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFS 396
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In
Complex With Bacillus Subtilis Xylanase
Length = 381
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 82/402 (20%), Positives = 138/402 (34%), Gaps = 76/402 (18%)
Query: 74 RDYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKA 133
+D T +Y + G L++D W +C+ P+
Sbjct: 9 KDPATSLYTIPFHDGA-----SLVLDVAGPLVWSTCKGGQPPA----------------- 46
Query: 134 DLSSSFKTIPCSSDMCKSEFARLFSLTFCPTPT-------SPC-AYDYRYADGSAAKGIF 185
IPCSS C A + CP P+ PC AY Y G+ A G
Sbjct: 47 -------EIPCSSPTCL--LANAYPAPGCPAPSCGSDKHDKPCTAYPYNPVSGACAAGSL 97
Query: 186 GKERVTIGLENGGK--TRIE-EVVMGCSDT-IQGQIFAEADGVLGLSYDKYSFAQKVTNG 241
R +G K +++ V+ C+ + + + + GV GL+ + +V +
Sbjct: 98 SHTRFVANTTDGSKPVSKVNVGVLAACAPSKLLASLPRGSTGVAGLANSGLALPAQVASA 157
Query: 242 STFARGKFAYCLVDHLSHKNVSNYLIFGEES---KRMRMRMRYTLLGLIG--PDYXXXXX 296
A +F CL IFG + M YT L G P +
Sbjct: 158 QKVAN-RFLLCL-----PTGGPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISAR 211
Query: 297 XXXXXXXMLNIPSQVWDFNRGGGTAFDSGTTLTFLAEPAYKPVVAALEMSLSRYQ----- 351
+ +P GG + L Y+P++ A +L+
Sbjct: 212 SIVVGDTRVPVPEGALAT---GGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAP 268
Query: 352 ---RLKRDAPFEYCFNSTGFDES----SVPKLVFHFADGARFEPHTKSYIIRVAHGIRCL 404
+ APF C+++ + +VP + G+ + K+ ++ V G C+
Sbjct: 269 VARAVVAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSDWTMTGKNSMVDVKQGTACV 328
Query: 405 GFVS----ATWPG---ASAIGNIMQQNYFWEFDLLKDRLGFA 439
FV A G A +G +++ +FD+ K RLGF+
Sbjct: 329 AFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFS 370
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 78/340 (22%), Positives = 128/340 (37%), Gaps = 76/340 (22%)
Query: 81 YFVEIKVGTPSQKLRLIVDTGSEFSWI-SCRYHCGP--SCTKKGTIAGSRRRVFKADLSS 137
Y ++ VG+ Q+ +I+DTGS W+ CG C GT F SS
Sbjct: 14 YASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDCKSSGT--------FTPSSSS 65
Query: 138 SFKTIPCSSDMCKSEFARLFSLTFCPTPTSPCAYDYRYADGSAAKGIFGKERVTIG---- 193
S+K + A+ RY DGS ++G +GK+ VTI
Sbjct: 66 SYKNLGA-------------------------AFTIRYGDGSTSQGTWGKDTVTINGVSI 100
Query: 194 ----LENGGKTRIEEVVMGCSDTIQGQIFAEADGVLGLSYDKYSFAQKVTNGSTFARGKF 249
+ + +T +++ ++G T ++ + +YD K +GK
Sbjct: 101 TGQQIADVTQTSVDQGILGIGYTSNEAVYDTSGRQTTPNYDNVPVTLK-------KQGKI 153
Query: 250 ---AYCLVDHLSHKNV-SNYLIFGEESKRMRMRMRYTLLGLIGPDYXXXXXXXXXXXXML 305
AY L +L+ + + +IFG +Y+ G + + +
Sbjct: 154 RTNAYSL--YLNSPSAETGTIIFGGVD-----NAKYS--GKLVAEQVTSSQALTISLASV 204
Query: 306 NIPSQVWDFNRGGGTAFDSGTTLTFLAEPAYKPVVAALEMSLSRYQRLKRDAPFEYC-FN 364
N+ + F G G DSGTTLT+ P A +++ RL + A +Y F
Sbjct: 205 NLKGSSFSF--GDGALLDSGTTLTYF------PSDFAAQLADKAGARLVQVARDQYLYFI 256
Query: 365 STGFDESSVPKLVFHFADGARFEPHTKSYIIRVAHGIRCL 404
D S VF+F +GA+ Y+ + G CL
Sbjct: 257 DCNTDTSGTT--VFNFGNGAKITVPNTEYVYQNGDG-TCL 293
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 66/152 (43%), Gaps = 43/152 (28%)
Query: 81 YFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKADLSSSFK 140
YF I +G+P Q +I DTGS W+ Y P+C SR F+ SS++
Sbjct: 25 YFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACKTH-----SR---FQPSQSSTY- 75
Query: 141 TIPCSSDMCKSEFARLFSLTFCPTPTSPCAYDYRYADGSAAKGIFGKERVTI-GLENGGK 199
S+ + FS+ +Y GS + GI G ++V++ GL G+
Sbjct: 76 ----------SQPGQSFSI--------------QYGTGSLS-GIIGADQVSVEGLTVVGQ 110
Query: 200 TRIEEVVMGCSDTIQGQIF--AEADGVLGLSY 229
E V T GQ F AE DG+LGL Y
Sbjct: 111 QFGESV------TEPGQTFVDAEFDGILGLGY 136
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 72/166 (43%), Gaps = 41/166 (24%)
Query: 75 DYGTGM-YFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKA 133
DYG + Y+ ++ +GTP +K L DTGS WI+ CT GSR+ +
Sbjct: 10 DYGNDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTL-----CTN----CGSRQTKYDP 60
Query: 134 DLSSSFKTIPCSSDMCKSEFARLFSLTFCPTPTSPCAYDYRYADGSAAKGIFGKERVTI- 192
+ SS+++ R +S++ Y DGS+A GI K+ V +
Sbjct: 61 NQSSTYQAD-----------GRTWSIS--------------YGDGSSASGILAKDNVNLG 95
Query: 193 GLENGGKTRIEEVVMGCSDTIQGQIFAEADGVLGLSYDKYSFAQKV 238
GL G+T IE + G DG+LGL +D + + V
Sbjct: 96 GLLIKGQT-IELAKREAASFASG----PNDGLLGLGFDTITTVRGV 136
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 88/375 (23%), Positives = 141/375 (37%), Gaps = 79/375 (21%)
Query: 81 YFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKADLSSSFK 140
YF I +GTP+Q +I DTGS W+ Y +C S F D SS+F+
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLAC--------SDHNQFNPDDSSTFE 65
Query: 141 TIPCSSDMCKSEFARLFSLTFCPTPTSPCAYDYRYADGSAAKGIFGKERVTIGLENGGKT 200
++ S+T Y GS GI G + V + GG +
Sbjct: 66 AT-----------SQELSIT--------------YGTGS-MTGILGYDTVQV----GGIS 95
Query: 201 RIEEVVMGCSDTIQGQI--FAEADGVLGLSYDKYSFAQKVTNGSTFARGKFAYCLVDHLS 258
+ + G S+T G +A DG+LGL+Y S A G A + D+L
Sbjct: 96 DTNQ-IFGLSETEPGSFLYYAPFDGILGLAYPSIS-----------ASG--ATPVFDNLW 141
Query: 259 HKNVSNYLIFGEESKRMRMRMRYTLLGLIGPDYXXXXXXXXXXXX----MLNIPSQVWDF 314
+ + + +F LLG I Y + + S D
Sbjct: 142 DQGLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDG 201
Query: 315 N----RGGGTAF-DSGTTLTFLAEPAYKPVVAALEMSLSRYQRLKRDAPFEYCFNSTGFD 369
GG A D+GT+L L P +A ++ + ++ E + + D
Sbjct: 202 ETIACSGGCQAIVDTGTSL--LTGP--TSAIANIQSDIGA----SENSDGEMVISCSSID 253
Query: 370 ESSVPKLVFHFADGARFEPHTKSYIIRVAHGIRCLGFVSATWPGASA----IGNIMQQNY 425
S+P +VF DG ++ +YI++ GF P +S +G++ + Y
Sbjct: 254 --SLPDIVFTI-DGVQYPLSPSAYILQDDDSCTS-GFEGMDVPTSSGELWILGDVFIRQY 309
Query: 426 FWEFDLLKDRLGFAP 440
+ FD +++G AP
Sbjct: 310 YTVFDRANNKVGLAP 324
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 65/161 (40%), Gaps = 41/161 (25%)
Query: 81 YFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKADLSSSFK 140
YF EI +GTP Q ++ DTGS W+ Y +CT S R F SS++
Sbjct: 14 YFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQACT-------SHSR-FNPSESSTYS 65
Query: 141 TIPCSSDMCKSEFARLFSLTFCPTPTSPCAYDYRYADGSAAKGIFGKERVTIGLENGGKT 200
T + FSL +Y GS G FG + +T+
Sbjct: 66 TN-----------GQTFSL--------------QYGSGS-LTGFFGYDTLTV-----QSI 94
Query: 201 RIEEVVMGCSDTIQGQ--IFAEADGVLGLSYDKYSFAQKVT 239
++ G S+ G ++A+ DG++GL+Y S + T
Sbjct: 95 QVPNQEFGLSENEPGTNFVYAQFDGIMGLAYPALSVDEATT 135
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 89/375 (23%), Positives = 144/375 (38%), Gaps = 79/375 (21%)
Query: 81 YFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKADLSSSFK 140
YF I +GTP+Q +I DTGS W+ Y C+ ++A S F D SS+F+
Sbjct: 58 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVY-----CS---SLACSDHNQFNPDDSSTFE 109
Query: 141 TIPCSSDMCKSEFARLFSLTFCPTPTSPCAYDYRYADGSAAKGIFGKERVTIGLENGGKT 200
++ S+T Y GS GI G + V + GG +
Sbjct: 110 AT-----------SQELSIT--------------YGTGSMT-GILGYDTVQV----GGIS 139
Query: 201 RIEEVVMGCSDTIQGQI--FAEADGVLGLSYDKYSFAQKVTNGSTFARGKFAYCLVDHLS 258
+ + G S+T G +A DG+LGL+Y S A G A + D+L
Sbjct: 140 DTNQ-IFGLSETEPGSFLYYAPFDGILGLAYPSIS-----------ASG--ATPVFDNLW 185
Query: 259 HKNVSNYLIFGEESKRMRMRMRYTLLGLIGPDYXXXXXXXXXXXX----MLNIPSQVWDF 314
+ + + +F LLG I Y + + S D
Sbjct: 186 DQGLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDG 245
Query: 315 N----RGGGTAF-DSGTTLTFLAEPAYKPVVAALEMSLSRYQRLKRDAPFEYCFNSTGFD 369
GG A D+GT+L L P +A ++ + ++ E + + D
Sbjct: 246 ETIACSGGCQAIVDTGTSL--LTGPT--SAIANIQSDIGA----SENSDGEMVISCSSID 297
Query: 370 ESSVPKLVFHFADGARFEPHTKSYIIRVAHGIRCLGFVSATWPGASA----IGNIMQQNY 425
S+P +VF DG ++ +YI++ GF P +S +G++ + Y
Sbjct: 298 --SLPDIVFTI-DGVQYPLSPSAYILQDDDSCTS-GFEGMDVPTSSGELWILGDVFIRQY 353
Query: 426 FWEFDLLKDRLGFAP 440
+ FD +++G AP
Sbjct: 354 YTVFDRANNKVGLAP 368
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 66/160 (41%), Gaps = 41/160 (25%)
Query: 81 YFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKADLSSSFK 140
Y+ I +GTP + ++I DTGS W+S + +C S FK SS++
Sbjct: 14 YYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQAC--------SNHNKFKPRQSSTYV 65
Query: 141 TIPCSSDMCKSEFARLFSLTFCPTPTSPCAYDYRYADGSAAKGIFGKERVTIGLENGGKT 200
E + LT Y G +GI G++ V++G GG
Sbjct: 66 -----------ETGKTVDLT--------------YGTG-GMRGILGQDTVSVG---GGSD 96
Query: 201 RIEEVVMGCSDTIQGQIFAEA--DGVLGLSYDKYSFAQKV 238
+E +G S T G A A DG+LGL+Y + A V
Sbjct: 97 PNQE--LGESQTEPGPFQAAAPFDGILGLAYPSIAAAGAV 134
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 88/375 (23%), Positives = 140/375 (37%), Gaps = 79/375 (21%)
Query: 81 YFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKADLSSSFK 140
YF I +GTP+Q +I DTGS W+ Y +C S F D SS+F+
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLAC--------SDHNQFNPDDSSTFE 65
Query: 141 TIPCSSDMCKSEFARLFSLTFCPTPTSPCAYDYRYADGSAAKGIFGKERVTIGLENGGKT 200
+ S+T Y GS GI G + V + GG +
Sbjct: 66 AT-----------XQELSIT--------------YGTGS-MTGILGYDTVQV----GGIS 95
Query: 201 RIEEVVMGCSDTIQGQI--FAEADGVLGLSYDKYSFAQKVTNGSTFARGKFAYCLVDHLS 258
+ + G S+T G +A DG+LGL+Y S A G A + D+L
Sbjct: 96 DTNQ-IFGLSETEPGSFLYYAPFDGILGLAYPSIS-----------ASG--ATPVFDNLW 141
Query: 259 HKNVSNYLIFGEESKRMRMRMRYTLLGLIGPDYXXXXXXXXXXXX----MLNIPSQVWDF 314
+ + + +F LLG I Y + + S D
Sbjct: 142 DQGLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDG 201
Query: 315 N----RGGGTAF-DSGTTLTFLAEPAYKPVVAALEMSLSRYQRLKRDAPFEYCFNSTGFD 369
GG A D+GT+L L P +A ++ + ++ E + + D
Sbjct: 202 ETIACSGGCQAIVDTGTSL--LTGP--TSAIANIQSDIGA----SENSDGEMVISCSSID 253
Query: 370 ESSVPKLVFHFADGARFEPHTKSYIIRVAHGIRCLGFVSATWPGASA----IGNIMQQNY 425
S+P +VF DG ++ +YI++ GF P +S +G++ + Y
Sbjct: 254 --SLPDIVFTI-DGVQYPLSPSAYILQDDDSCTS-GFEGMDVPTSSGELWILGDVFIRQY 309
Query: 426 FWEFDLLKDRLGFAP 440
+ FD +++G AP
Sbjct: 310 YTVFDRANNKVGLAP 324
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 71/172 (41%), Gaps = 36/172 (20%)
Query: 67 EMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGS 126
E + A ++Y YF EI VGTP QK +I DTGS W+ PS +IA
Sbjct: 40 EGDIVALKNYMNAQYFGEIGVGTPPQKFTVIFDTGSSNLWV-------PSAKCYFSIACY 92
Query: 127 RRRVFKADLSSSFKTIPCSSDMCKSEFARLFSLTFCPTPTSPCAYDYRYADGSAAKGIFG 186
+KA SS++K P A +Y GS A G F
Sbjct: 93 LHSRYKAGASSTYK-----------------------KNGKPAA--IQYGTGSIA-GYFS 126
Query: 187 KERVTIGLENGGKTRIEEVVMGCSDTIQGQIFAEADGVLGLSYDKYSFAQKV 238
++ VT+G + +E + + + A+ DG+LGL + + S + V
Sbjct: 127 EDSVTVG---DLVVKDQEFIEATKEPGITFLVAKFDGILGLGFKEISVGKAV 175
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 89/375 (23%), Positives = 143/375 (38%), Gaps = 79/375 (21%)
Query: 81 YFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKADLSSSFK 140
YF I +GTP+Q +I DTGS W+ Y C+ ++A S F D SS+F+
Sbjct: 58 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVY-----CS---SLACSDHNQFNPDDSSTFE 109
Query: 141 TIPCSSDMCKSEFARLFSLTFCPTPTSPCAYDYRYADGSAAKGIFGKERVTIGLENGGKT 200
+ S+T Y GS GI G + V + GG +
Sbjct: 110 AT-----------XQELSIT--------------YGTGSMT-GILGYDTVQV----GGIS 139
Query: 201 RIEEVVMGCSDTIQGQI--FAEADGVLGLSYDKYSFAQKVTNGSTFARGKFAYCLVDHLS 258
+ + G S+T G +A DG+LGL+Y S A G A + D+L
Sbjct: 140 DTNQ-IFGLSETEPGSFLYYAPFDGILGLAYPSIS-----------ASG--ATPVFDNLW 185
Query: 259 HKNVSNYLIFGEESKRMRMRMRYTLLGLIGPDYXXXXXXXXXXXX----MLNIPSQVWDF 314
+ + + +F LLG I Y + + S D
Sbjct: 186 DQGLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDG 245
Query: 315 N----RGGGTAF-DSGTTLTFLAEPAYKPVVAALEMSLSRYQRLKRDAPFEYCFNSTGFD 369
GG A D+GT+L L P +A ++ + ++ E + + D
Sbjct: 246 ETIACSGGCQAIVDTGTSL--LTGPT--SAIANIQSDIGA----SENSDGEMVISCSSID 297
Query: 370 ESSVPKLVFHFADGARFEPHTKSYIIRVAHGIRCLGFVSATWPGASA----IGNIMQQNY 425
S+P +VF DG ++ +YI++ GF P +S +G++ + Y
Sbjct: 298 --SLPDIVFTI-DGVQYPLSPSAYILQDDDSCTS-GFEGMDVPTSSGELWILGDVFIRQY 353
Query: 426 FWEFDLLKDRLGFAP 440
+ FD +++G AP
Sbjct: 354 YTVFDRANNKVGLAP 368
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure Of
Porcine Pepsin
Length = 326
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 87/375 (23%), Positives = 141/375 (37%), Gaps = 79/375 (21%)
Query: 81 YFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKADLSSSFK 140
YF I +GTP+Q +I DTGS W+ Y +C S F D SS+F+
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLAC--------SDHNQFNPDDSSTFE 65
Query: 141 TIPCSSDMCKSEFARLFSLTFCPTPTSPCAYDYRYADGSAAKGIFGKERVTIGLENGGKT 200
++ S+T Y GS GI G + V + GG +
Sbjct: 66 AT-----------SQELSIT--------------YGTGS-MTGILGYDTVQV----GGIS 95
Query: 201 RIEEVVMGCSDTIQGQI--FAEADGVLGLSYDKYSFAQKVTNGSTFARGKFAYCLVDHLS 258
+ + G S+T G +A DG+LGL+Y S A G A + D+L
Sbjct: 96 DTNQ-IFGLSETEPGSFLYYAPFDGILGLAYPSIS-----------ASG--ATPVFDNLW 141
Query: 259 HKNVSNYLIFGEESKRMRMRMRYTLLGLIGPDYXXXXXXXXXXXX----MLNIPSQVWDF 314
+ + + +F LLG I Y + + S D
Sbjct: 142 DQGLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDG 201
Query: 315 N----RGGGTAF-DSGTTLTFLAEPAYKPVVAALEMSLSRYQRLKRDAPFEYCFNSTGFD 369
GG A D+GT+L L P +A ++ + ++ E + + D
Sbjct: 202 ETIACSGGCQAIVDTGTSL--LTGP--TSAIANIQSDIGA----SENSDGEMVISCSSID 253
Query: 370 ESSVPKLVFHFADGARFEPHTKSYIIRVAHGIRCLGFVSATWPGASA----IGNIMQQNY 425
S+P +VF +G ++ +YI++ GF P +S +G++ + Y
Sbjct: 254 --SLPDIVFTI-NGVQYPLSPSAYILQDDDSCTS-GFEGMDVPTSSGELWILGDVFIRQY 309
Query: 426 FWEFDLLKDRLGFAP 440
+ FD +++G AP
Sbjct: 310 YTVFDRANNKVGLAP 324
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 63/155 (40%), Gaps = 41/155 (26%)
Query: 81 YFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKADLSSSFK 140
YF I +GTP+Q +I DTGS W+ Y +C S F D SS+F+
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLAC--------SDHNQFNPDDSSTFE 65
Query: 141 TIPCSSDMCKSEFARLFSLTFCPTPTSPCAYDYRYADGSAAKGIFGKERVTIGLENGGKT 200
++ S+T Y GS GI G + V + GG +
Sbjct: 66 AT-----------SQELSIT--------------YGTGS-MTGILGYDTVQV----GGIS 95
Query: 201 RIEEVVMGCSDTIQGQI--FAEADGVLGLSYDKYS 233
+ + G S+T G +A DG+LGL+Y S
Sbjct: 96 DTNQ-IFGLSETEPGSFLYYAPFDGILGLAYPSIS 129
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 87/375 (23%), Positives = 140/375 (37%), Gaps = 79/375 (21%)
Query: 81 YFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKADLSSSFK 140
YF I +GTP+Q +I DTGS W+ Y +C S F D SS+F+
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLAC--------SDHNQFNPDDSSTFE 65
Query: 141 TIPCSSDMCKSEFARLFSLTFCPTPTSPCAYDYRYADGSAAKGIFGKERVTIGLENGGKT 200
+ S+T Y GS GI G + V + GG +
Sbjct: 66 AT-----------XQELSIT--------------YGTGS-MTGILGYDTVQV----GGIS 95
Query: 201 RIEEVVMGCSDTIQGQI--FAEADGVLGLSYDKYSFAQKVTNGSTFARGKFAYCLVDHLS 258
+ + G S+T G +A DG+LGL+Y S A G A + D+L
Sbjct: 96 DTNQ-IFGLSETEPGSFLYYAPFDGILGLAYPSIS-----------ASG--ATPVFDNLW 141
Query: 259 HKNVSNYLIFGEESKRMRMRMRYTLLGLIGPDYXXXXXXXXXXXX----MLNIPSQVWDF 314
+ + + +F LLG I Y + + S D
Sbjct: 142 DQGLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDG 201
Query: 315 N----RGGGTAF-DSGTTLTFLAEPAYKPVVAALEMSLSRYQRLKRDAPFEYCFNSTGFD 369
GG A D+GT+L L P +A ++ + ++ E + + D
Sbjct: 202 ETIACSGGCQAIVDTGTSL--LTGP--TSAIANIQSDIGA----SENSDGEMVISCSSID 253
Query: 370 ESSVPKLVFHFADGARFEPHTKSYIIRVAHGIRCLGFVSATWPGASA----IGNIMQQNY 425
S+P +VF +G ++ +YI++ GF P +S +G++ + Y
Sbjct: 254 --SLPDIVFTI-NGVQYPLSPSAYILQDDDSCTS-GFEGMDVPTSSGELWILGDVFIRQY 309
Query: 426 FWEFDLLKDRLGFAP 440
+ FD +++G AP
Sbjct: 310 YTVFDRANNKVGLAP 324
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 83/388 (21%), Positives = 147/388 (37%), Gaps = 80/388 (20%)
Query: 67 EMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGS 126
E PL+ +Y YF I +GTP+Q ++ DTGS W+ Y +CT
Sbjct: 3 EQPLE---NYLDMEYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACT-------- 51
Query: 127 RRRVFKADLSSSFKTIPCSSDMCKSEFARLFSLTFCPTPTSPCAYDYRYADGSAAKGIFG 186
F + SS++++ + S+T Y GS GI G
Sbjct: 52 NHNRFNPEDSSTYQST-----------SETVSIT--------------YGTGS-MTGILG 85
Query: 187 KERVTIGLENGGKTRIEEVVMGCSDTIQGQI--FAEADGVLGLSYDKYSFA------QKV 238
+ V + GG + + + G S+T G +A DG+LGL+Y S + +
Sbjct: 86 YDTVQV----GGISDTNQ-IFGLSETEPGSFLYYAPFDGILGLAYPSISSSGATPVFDNI 140
Query: 239 TNGSTFARGKFAYCLVDHLSHKNVSNYLIF--GEESKRMRMRMRYTLLGLIGPDYXXXXX 296
N ++ F+ +LS + S ++ G +S + + + + G
Sbjct: 141 WNQGLVSQDLFSV----YLSADDQSGSVVIFGGIDSSYYTGSLNWVPVTVEG-------- 188
Query: 297 XXXXXXXMLNIPSQVWDFNRGGGTAFDSGTTLTFLAEPAYKPVVAALEMSLSRYQRLKRD 356
+ + + G D+GT+L L P +A ++ + + D
Sbjct: 189 YWQITVDSITMNGEAIACAEGCQAIVDTGTSL--LTGPTSP--IANIQSDIGASENSDGD 244
Query: 357 APFEYCFNSTGFDESSVPKLVFHFADGARFEPHTKSYIIRVAHGIRCLGFVSATWPGASA 416
S S+P +VF +G ++ +YI++ + G GF P S
Sbjct: 245 MVVSCSAIS------SLPDIVFTI-NGVQYPVPPSAYILQ-SEGSCISGFQGMNLPTESG 296
Query: 417 ----IGNIMQQNYFWEFDLLKDRLGFAP 440
+G++ + YF FD +++G AP
Sbjct: 297 ELWILGDVFIRQYFTVFDRANNQVGLAP 324
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 86/393 (21%), Positives = 139/393 (35%), Gaps = 89/393 (22%)
Query: 63 GSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGT 122
G +PL +Y YF +I +GTP Q+ ++ DTGS W+ PS K
Sbjct: 1 GEVASVPL---TNYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWV-------PSIYCKSN 50
Query: 123 IAGSRRRVFKADLSSSFKTIPCSSDMCKSEFARLFSLTFCPTPTSPCAYDYRYADGSAAK 182
+ +R F SS+F+ + + S+ Y GS +
Sbjct: 51 ACKNHQR-FDPRKSSTFQNL-----------GKPLSI--------------HYGTGS-MQ 83
Query: 183 GIFGKERVTIGLENGGKTRIEEVVMGCSDTIQGQIF--AEADGVLGLSYDKYSFAQKVTN 240
GI G + VT+ I++ V G S G +F AE DG+LG++Y +
Sbjct: 84 GILGYDTVTV----SNIVDIQQTV-GLSTQEPGDVFTYAEFDGILGMAYPSLA------- 131
Query: 241 GSTFARGKFAYCLVDHLSHKNVSNYLIFGEESKRMRMRMRYTLLGLIGPDYXXXXXXXXX 300
+++ + D++ ++++ +F R T LG I P Y
Sbjct: 132 ------SEYSIPVFDNMMNRHLVAQDLFSVYMDRNGQESMLT-LGAIDPSYYTGSLHWVP 184
Query: 301 XXXMLNIPSQVWDFN-------------RGGGTA-FDSGTTLTFLAEPAYKPVVAALEMS 346
Q W F GG A D+GT+ + A+ +
Sbjct: 185 VTVQ-----QYWQFTVDSVTISGVVVACEGGCQAILDTGTSKLVGPSSDILNIQQAIGAT 239
Query: 347 LSRYQRLKRDAPFEYCFNSTGFDESSVPKLVFHFADGARFEPHTKSYIIRVAHGIRCLGF 406
++Y D C N S +P +VF + P T S G GF
Sbjct: 240 QNQYGEFDID-----CDN-----LSYMPTVVFEI--NGKMYPLTPSAYTSQDQGFCTSGF 287
Query: 407 VSATWPGASAIGNIMQQNYFWEFDLLKDRLGFA 439
S +G++ + Y+ FD + +G A
Sbjct: 288 QSENHSQKWILGDVFIREYYSVFDRANNLVGLA 320
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 71/166 (42%), Gaps = 41/166 (24%)
Query: 75 DYGTGM-YFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKA 133
DYG + Y+ ++ +GTP +K L DTGS WI+ CT GS + +
Sbjct: 10 DYGNDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTL-----CTN----CGSGQTKYDP 60
Query: 134 DLSSSFKTIPCSSDMCKSEFARLFSLTFCPTPTSPCAYDYRYADGSAAKGIFGKERVTI- 192
+ SS+++ R +S++ Y DGS+A GI K+ V +
Sbjct: 61 NQSSTYQAD-----------GRTWSIS--------------YGDGSSASGILAKDNVNLG 95
Query: 193 GLENGGKTRIEEVVMGCSDTIQGQIFAEADGVLGLSYDKYSFAQKV 238
GL G+T IE + G DG+LGL +D + + V
Sbjct: 96 GLLIKGQT-IELAKREAASFASG----PNDGLLGLGFDTITTVRGV 136
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 83/388 (21%), Positives = 147/388 (37%), Gaps = 80/388 (20%)
Query: 67 EMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGS 126
E PL+ +Y YF I +GTP+Q ++ DTGS W+ Y +CT
Sbjct: 3 EQPLE---NYLDMEYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACT-------- 51
Query: 127 RRRVFKADLSSSFKTIPCSSDMCKSEFARLFSLTFCPTPTSPCAYDYRYADGSAAKGIFG 186
F + SS++++ + S+T Y GS GI G
Sbjct: 52 NHNRFNPEDSSTYQST-----------SETVSIT--------------YGTGS-MTGILG 85
Query: 187 KERVTIGLENGGKTRIEEVVMGCSDTIQGQI--FAEADGVLGLSYDKYSFA------QKV 238
+ V + GG + + + G S+T G +A DG+LGL+Y S + +
Sbjct: 86 YDTVQV----GGISDTNQ-IFGLSETEPGSFLYYAPFDGILGLAYPSISSSGATPVFDNI 140
Query: 239 TNGSTFARGKFAYCLVDHLSHKNVSNYLIF--GEESKRMRMRMRYTLLGLIGPDYXXXXX 296
N ++ F+ +LS + S ++ G +S + + + + G
Sbjct: 141 WNQGLVSQDLFSV----YLSADDQSGSVVIFGGIDSSYYTGSLNWVPVTVEG-------- 188
Query: 297 XXXXXXXMLNIPSQVWDFNRGGGTAFDSGTTLTFLAEPAYKPVVAALEMSLSRYQRLKRD 356
+ + + G D+GT+L L P +A ++ + + D
Sbjct: 189 YWQITVDSITMNGEAIACAEGCQAIVDTGTSL--LTGPTSP--IANIQSDIGASENSDGD 244
Query: 357 APFEYCFNSTGFDESSVPKLVFHFADGARFEPHTKSYIIRVAHGIRCLGFVSATWPGASA 416
S S+P +VF +G ++ +YI++ + G GF P S
Sbjct: 245 MVVSCSAIS------SLPDIVFTI-NGVQYPVPPSAYILQ-SEGSCISGFQGMNVPTESG 296
Query: 417 ----IGNIMQQNYFWEFDLLKDRLGFAP 440
+G++ + YF FD +++G AP
Sbjct: 297 ELWILGDVFIRQYFTVFDRANNQVGLAP 324
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 86/397 (21%), Positives = 144/397 (36%), Gaps = 98/397 (24%)
Query: 67 EMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGS 126
++PL +Y Y+ +I +GTP Q ++I+DTGS W+ C G++A
Sbjct: 4 DVPL---TNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSN-EC-------GSLACF 52
Query: 127 RRRVFKADLSSSFKTIPCSSDMCKSEFARLFSLTFCPTPTSPCAYDYRYADGSAAKGIFG 186
+ + SSS+K +EFA +Y GS +G
Sbjct: 53 LHSKYDHEASSSYKA-------NGTEFA------------------IQYGTGS-LEGYIS 86
Query: 187 KERVTIGLENGGKTRIEEVVMGCSDTIQGQIFAEADGVLGLSYDKYSFAQKV------TN 240
++ ++IG K E T F + DG+LGL YD S + V
Sbjct: 87 QDTLSIGDLTIPKQDFAEATSEPGLTFA---FGKFDGILGLGYDTISVDKVVPPFYNAIQ 143
Query: 241 GSTFARGKFAYCLVDHLSHKNVSNYLIFG--EESK------------RMRMRMRYTLLGL 286
+FA+ L D FG +ESK + +++ +GL
Sbjct: 144 QDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGL 203
Query: 287 IGPDYXXXXXXXXXXXXMLNIPSQVWDFNRGGGTAFDSGTTLTFLAEPAYKPVVAALEMS 346
G +Y G A D+GT+L L + L
Sbjct: 204 -GDEYAELESH---------------------GAAIDTGTSLITLP--------SGLAEM 233
Query: 347 LSRYQRLKRDAPFEYCFNSTGFDESSVPKLVFHFADGARFEPHTKSYIIRVA----HGIR 402
++ K+ + +Y + D ++P L+F+F +G F Y + V+ I
Sbjct: 234 INAEIGAKKGSTGQYTLDCNTRD--NLPDLIFNF-NGYNFTIGPYDYTLEVSGSCISAIT 290
Query: 403 CLGFVSATWPGASAIGNIMQQNYFWEFDLLKDRLGFA 439
+ F P A +G+ + Y+ +DL + +G A
Sbjct: 291 PMDFPEPVGPLA-IVGDAFLRKYYSIYDLGNNAVGLA 326
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 83/381 (21%), Positives = 139/381 (36%), Gaps = 88/381 (23%)
Query: 76 YGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKADL 135
Y YF +I +GTP Q+ ++ DTGS W+ PS K + + R F
Sbjct: 8 YLDSQYFGKIYIGTPPQEFTVVFDTGSSDLWV-------PSIYCKSNVCKNHHR-FDPRK 59
Query: 136 SSSFKTIPCSSDMCKSEFARLFSLTFCPTPTSPCAYDYRYADGSAAKGIFGKERVTI-GL 194
SS+F+ + + S+ Y GS +G G + VT+ +
Sbjct: 60 SSTFRNL-----------GKPLSI--------------HYGTGS-MEGFLGYDTVTVSNI 93
Query: 195 ENGGKTRIEEVVMGCSDTIQGQIF--AEADGVLGLSYDKYSFAQKVTNGSTFARGKFAYC 252
+ +T +G S G++F +E DG+LGL+Y + S ++ F
Sbjct: 94 VDPNQT------VGLSTEQPGEVFTYSEFDGILGLAYPSLA--------SEYSVPVFDNM 139
Query: 253 LVDHLSHKNVSNYLIFGEESKRMRMRMRYTLLGLIGPDYXXXXXXXXXXXXMLNIPSQVW 312
+ HL +++ + ++ + + + M LG I P Y Q W
Sbjct: 140 MDRHLVARDL--FSVYMDRNGQGSMLT----LGAIDPSYYTGSLHWVPVTLQ-----QYW 188
Query: 313 DFN-------------RGGGTA-FDSGTTLTFLAEPAYKPVVAALEMSLSRYQRLKRDAP 358
F GG A D+GT++ F + A+ + +RY +
Sbjct: 189 QFTVDSVTINGVAVACVGGCQAILDTGTSVLFGPSSDILKIQMAIGATENRYGEFDVN-- 246
Query: 359 FEYCFNSTGFDESSVPKLVFHFADGARFEPHTKSYIIRVAHGIRCLGFVSATWPGASAIG 418
C N S+P +VF R P + S G GF +G
Sbjct: 247 ---CGN-----LRSMPTVVFEI--NGRDYPLSPSAYTSKDQGFCTSGFQGDNNSELWILG 296
Query: 419 NIMQQNYFWEFDLLKDRLGFA 439
++ + Y+ FD +R+G A
Sbjct: 297 DVFIREYYSVFDRANNRVGLA 317
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 86/393 (21%), Positives = 138/393 (35%), Gaps = 89/393 (22%)
Query: 63 GSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGT 122
G +PL +Y YF +I +GTP Q+ ++ DTGS W+ PS K
Sbjct: 1 GEVASVPL---TNYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWV-------PSIYCKSN 50
Query: 123 IAGSRRRVFKADLSSSFKTIPCSSDMCKSEFARLFSLTFCPTPTSPCAYDYRYADGSAAK 182
+ +R F SS+F+ + + S+ Y GS +
Sbjct: 51 ACKNHQR-FDPRKSSTFQNL-----------GKPLSI--------------HYGTGS-MQ 83
Query: 183 GIFGKERVTIGLENGGKTRIEEVVMGCSDTIQGQIF--AEADGVLGLSYDKYSFAQKVTN 240
GI G + VT+ I++ V G S G F AE DG+LG++Y +
Sbjct: 84 GILGYDTVTV----SNIVDIQQTV-GLSTQEPGDFFTYAEFDGILGMAYPSLA------- 131
Query: 241 GSTFARGKFAYCLVDHLSHKNVSNYLIFGEESKRMRMRMRYTLLGLIGPDYXXXXXXXXX 300
+++ + D++ ++++ +F R T LG I P Y
Sbjct: 132 ------SEYSIPVFDNMMNRHLVAQDLFSVYMDRNGQESMLT-LGAIDPSYYTGSLHWVP 184
Query: 301 XXXMLNIPSQVWDFN-------------RGGGTA-FDSGTTLTFLAEPAYKPVVAALEMS 346
Q W F GG A D+GT+ + A+ +
Sbjct: 185 VTVQ-----QYWQFTVDSVTISGVVVACEGGCQAILDTGTSKLVGPSSDILNIQQAIGAT 239
Query: 347 LSRYQRLKRDAPFEYCFNSTGFDESSVPKLVFHFADGARFEPHTKSYIIRVAHGIRCLGF 406
++Y D C N S +P +VF + P T S G GF
Sbjct: 240 QNQYGEFDID-----CDN-----LSYMPTVVFEI--NGKMYPLTPSAYTSQDQGFCTSGF 287
Query: 407 VSATWPGASAIGNIMQQNYFWEFDLLKDRLGFA 439
S +G++ + Y+ FD + +G A
Sbjct: 288 QSENHSQKWILGDVFIREYYSVFDRANNLVGLA 320
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 86/397 (21%), Positives = 143/397 (36%), Gaps = 98/397 (24%)
Query: 67 EMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGS 126
++PL +Y Y+ +I +GTP Q ++I+DTGS W+ C G++A
Sbjct: 4 DVPL---TNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSN-EC-------GSLACF 52
Query: 127 RRRVFKADLSSSFKTIPCSSDMCKSEFARLFSLTFCPTPTSPCAYDYRYADGSAAKGIFG 186
+ + SSS+K +EFA +Y GS +G
Sbjct: 53 LHSKYDHEASSSYKA-------NGTEFA------------------IQYGTGS-LEGYIS 86
Query: 187 KERVTIGLENGGKTRIEEVVMGCSDTIQGQIFAEADGVLGLSYDKYSFAQKV------TN 240
++ ++IG K E T F + DG+LGL YD S + V
Sbjct: 87 QDTLSIGDLTIPKQDFAEATSEPGLTFA---FGKFDGILGLGYDTISVDKVVPPFYNAIQ 143
Query: 241 GSTFARGKFAYCLVDHLSHKNVSNYLIFG--EESK------------RMRMRMRYTLLGL 286
+FA+ L D FG +ESK + +++ +GL
Sbjct: 144 QDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGL 203
Query: 287 IGPDYXXXXXXXXXXXXMLNIPSQVWDFNRGGGTAFDSGTTLTFLAEPAYKPVVAALEMS 346
G +Y G A D+GT+L L + L
Sbjct: 204 -GDEYAELESH---------------------GAAIDTGTSLITLP--------SGLAEM 233
Query: 347 LSRYQRLKRDAPFEYCFNSTGFDESSVPKLVFHFADGARFEPHTKSYIIRVA----HGIR 402
++ K+ +Y + D ++P L+F+F +G F Y + V+ I
Sbjct: 234 INAEIGAKKGWTGQYTLDCNTRD--NLPDLIFNF-NGYNFTIGPYDYTLEVSGSCISAIT 290
Query: 403 CLGFVSATWPGASAIGNIMQQNYFWEFDLLKDRLGFA 439
+ F P A +G+ + Y+ +DL + +G A
Sbjct: 291 PMDFPEPVGPLA-IVGDAFLRKYYSIYDLGNNAVGLA 326
>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
pdb|2QZX|B Chain B, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
Length = 342
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 48/115 (41%), Gaps = 28/115 (24%)
Query: 81 YFVEIKVGTPSQKLRLIVDTGSEFSWI-SCRYHCGPSCTKKGTIAGSRRRVFKADLSSSF 139
Y +I VG+ +QKL +IVDTGS WI C P + R K D S
Sbjct: 14 YTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIP-----------KWRGDKGDFCKSA 62
Query: 140 KTI-PCSSDMCKSEFARLFSLTFCPTPTSPCAYDYRYADGSAAKGIFGKERVTIG 193
+ P SS ++ R +D +Y DGS AKG K+ V IG
Sbjct: 63 GSYSPASSRTSQNLNTR---------------FDIKYGDGSYAKGKLYKDTVGIG 102
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 75 DYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKAD 134
D+ Y + + +GTP Q L+ DTGS +W+ H G CTK GS R F
Sbjct: 14 DFDLEEYAIPVSIGTPGQDFLLLFDTGSSDTWVP---HKG--CTKSEGCVGS--RFFDPS 66
Query: 135 LSSSFK 140
SS+FK
Sbjct: 67 ASSTFK 72
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 69/172 (40%), Gaps = 40/172 (23%)
Query: 67 EMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGS 126
++PL +Y Y+ +I +GTP Q ++I+DTGS W+ C G++A
Sbjct: 4 DVPL---TNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSN-EC-------GSLACF 52
Query: 127 RRRVFKADLSSSFKTIPCSSDMCKSEFARLFSLTFCPTPTSPCAYDYRYADGSAAKGIFG 186
+ + SSS+K +EFA +Y GS +G
Sbjct: 53 LHSKYDHEASSSYKA-------NGTEFA------------------IQYGTGS-LEGYIS 86
Query: 187 KERVTIGLENGGKTRIEEVVMGCSDTIQGQIFAEADGVLGLSYDKYSFAQKV 238
++ ++IG K E T F + DG+LGL YD S + V
Sbjct: 87 QDTLSIGDLTIPKQDFAEATSEPGLTFA---FGKFDGILGLGYDTISVDKVV 135
>pdb|1QS8|A Chain A, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
pdb|1QS8|B Chain B, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
Length = 329
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 75/216 (34%), Gaps = 50/216 (23%)
Query: 60 GASGSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTK 119
G+ IE+ D M++ E +VG QK LI DTGS W+ + C+
Sbjct: 2 GSENDVIEL-----DDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCNSSGCSI 56
Query: 120 KGTIAGSRRRVFKADLSSSFKTIPCSSDMCKSEFARLFSLTFCPTPTSPCAYDYRYADGS 179
K S+ + ++ D D Y G+
Sbjct: 57 KNLYDSSKSKSYEKD---------------------------------GTKVDITYGSGT 83
Query: 180 AAKGIFGKERVTIGLENGGKTRIEEVVMGCSDTIQGQIFAEADGVLGLSYDKYSFAQ--- 236
KG F K+ VT+G + IE + + I + E DG+LGL + S
Sbjct: 84 -VKGFFSKDLVTLGHLSMPYKFIEVIDTDDLEPIYSSV--EFDGILGLGWKDLSIGSIDP 140
Query: 237 ---KVTNGSTFARGKFAYCLVDHLSHKNVSNYLIFG 269
++ N + F + L H H + YL G
Sbjct: 141 IVVELKNQNKIDNALFTFYLPVHDVH---AGYLTIG 173
>pdb|2ANL|A Chain A, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
pdb|2ANL|B Chain B, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
Length = 327
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 81/218 (37%), Gaps = 46/218 (21%)
Query: 75 DYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKAD 134
D M++ E +VG QK LI DTGS W+ + K +I S + ++ +
Sbjct: 10 DVANLMFYGEGEVGDNHQKFMLIFDTGSANLWVPSK--------KCNSIGCSTKHLYDSS 61
Query: 135 LSSSFKTIPCSSDMCKSEFARLFSLTFCPTPTSPCAYDYRYADGSAAKGIFGKERVTIGL 194
S S++ D K E Y G+ +G F K+ VT+G
Sbjct: 62 KSKSYE-----KDGTKVEIT--------------------YGSGT-VRGFFSKDLVTLGY 95
Query: 195 ENGGKTRIEEVVMGCSDTIQGQIFAEADGVLGLSYDKYSFAQ------KVTNGSTFARGK 248
+ IE V D AE DG+LGL + S ++ N + +
Sbjct: 96 LSLPYKFIE--VTDTDDLEPLYTAAEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDQAL 153
Query: 249 FAYCLVDHLSHKNVSNYL-IFGEESKRMRMRMRYTLLG 285
F + L H H S YL I G E K + Y L
Sbjct: 154 FTFYLPVHDKH---SGYLTIGGIEEKFYEGELTYEKLN 188
>pdb|1MIQ|A Chain A, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
pdb|1MIQ|B Chain B, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
Length = 375
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 74/216 (34%), Gaps = 50/216 (23%)
Query: 60 GASGSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTK 119
G+ IE+ D M++ E +VG QK LI DTGS W+ + C+
Sbjct: 48 GSENDVIEL-----DDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCNSSGCSI 102
Query: 120 KGTIAGSRRRVFKADLSSSFKTIPCSSDMCKSEFARLFSLTFCPTPTSPCAYDYRYADGS 179
K S+ + ++ D D Y G+
Sbjct: 103 KNLYDSSKSKSYEKD---------------------------------GTKVDITYGSGT 129
Query: 180 AAKGIFGKERVTIGLENGGKTRIEEVVMGCSDTIQGQIFAEADGVLGLSYDKYSFAQ--- 236
KG F K+ VT+G + IE + I + E DG+LGL + S
Sbjct: 130 -VKGFFSKDLVTLGHLSMPYKFIEVTDTDDLEPIYSSV--EFDGILGLGWKDLSIGSIDP 186
Query: 237 ---KVTNGSTFARGKFAYCLVDHLSHKNVSNYLIFG 269
++ N + F + L H H + YL G
Sbjct: 187 IVVELKNQNKIDNALFTFYLPVHDVH---AGYLTIG 219
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 13/59 (22%)
Query: 63 GSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWI---------SCRYH 112
GSA+ + L RD YF EI +GTP QK +I DTGS W+ +CR H
Sbjct: 1 GSAV-VALTNDRDTS---YFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAH 55
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 63/161 (39%), Gaps = 58/161 (36%)
Query: 81 YFVEIKVGTPSQKLRLIVDTGSEFSWI-SCRYHCGPSCTKKGTIAGSRRRVFKADLSSSF 139
Y +I VG+ +QKL +IVDTGS W+ C + + +
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQ------------------- 54
Query: 140 KTIPCSSDMCKSEFARLFSLTFCPTPTSPCA-----YDYRYADGSAAKGIFGKERVTIGL 194
++D CK + T+ P+ +S + Y DGS+++G K+ V G
Sbjct: 55 -----TADFCKQKG------TYDPSGSSASQDLNTPFKIGYGDGSSSQGTLYKDTVGFG- 102
Query: 195 ENGGKTRIEEVVMGCSDTIQGQIFAEAD------GVLGLSY 229
G S I+ Q+ A+ D G+LG+ Y
Sbjct: 103 -------------GVS--IKNQVLADVDSTSIDQGILGVGY 128
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 63/161 (39%), Gaps = 58/161 (36%)
Query: 81 YFVEIKVGTPSQKLRLIVDTGSEFSWI-SCRYHCGPSCTKKGTIAGSRRRVFKADLSSSF 139
Y +I VG+ +QKL +IVDTGS W+ C + + +
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWVPDVNIDCQVTYSDQ------------------- 54
Query: 140 KTIPCSSDMCKSEFARLFSLTFCPTPTSPCA-----YDYRYADGSAAKGIFGKERVTIGL 194
++D CK + T+ P+ +S + Y DGS+++G K+ V G
Sbjct: 55 -----TADFCKQKG------TYDPSGSSASQDLNTPFSIGYGDGSSSQGTLYKDTVGFG- 102
Query: 195 ENGGKTRIEEVVMGCSDTIQGQIFAEAD------GVLGLSY 229
G S I+ Q+ A+ D G+LG+ Y
Sbjct: 103 -------------GVS--IKNQVLADVDSTSIDQGILGVGY 128
>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HW1|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3MSJ|A Chain A, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|B Chain B, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|C Chain C, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
Length = 411
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 60 GASGSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGS 102
G +GS +EM G G Y+VE+ VG+P Q L ++VDTGS
Sbjct: 13 GKTGSFVEMVDNLRGKSGQG-YYVEMTVGSPPQTLNILVDTGS 54
>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An
Exosite- Binding Antibody
Length = 402
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 60 GASGSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGS 102
G+ GS +EM G G Y+VE+ VG+P Q L ++VDTGS
Sbjct: 1 GSRGSFVEMVDNLRGKSGQG-YYVEMTVGSPPQTLNILVDTGS 42
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 5
pdb|2OHK|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
1- Amino-Isoquinoline
pdb|2OHL|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
2- Aminoquinoline
pdb|2OHM|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
N~3~-Benzylpyridine-2,3-Diamine
pdb|2OHN|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
4- (4-Fluorobenzyl)piperidine
pdb|2OHQ|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 4
pdb|2OHR|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6a
pdb|2OHS|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6b
pdb|2OHT|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 7
pdb|2OHU|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8b
pdb|2OHP|A Chain A, X-ray Crystal Structure Of Beta Secretase Complexed With
Compound 3
Length = 402
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 60 GASGSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGS 102
G GS +EM G G Y+VE+ VG+P Q L ++VDTGS
Sbjct: 11 GKKGSFVEMVDNLRGKSGQG-YYVEMTVGSPPQTLNILVDTGS 52
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase)
pdb|1W51|A Chain A, Bace (Beta Secretase) In Complex With A Nanomolar Non-
Peptidic Inhibitor
pdb|3RSV|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(R)-3-(2-Amino-6-
O-Tolylquinolin-3-Yl)-N-((R)-2,
2-Dimethyltetrahydro-2h-Pyran-4-Yl)-2- Methylpropanamide
pdb|3RSX|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(Thiophen-3- Yl)quinolin-2-Amine
pdb|3RTH|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(2-(3,3- Dimethylbut-1-Ynyl)phenyl)quinolin-2-Amine
pdb|3RTM|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-Cyclohexyl-N-Methylpropanamide
pdb|3RTN|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
3-(2-Amino-6-O-
Tolylquinolin-3-Yl)-N-Cyclohexylpropanamide
pdb|3RU1|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-(Cyclohexylmethyl)propanamide
pdb|3RVI|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
2-((2-Amino-6-O-
Tolylquinolin-3-Yl)methyl)-N-
(Cyclohexylmethyl)pentanamide
pdb|4ACU|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 14
pdb|4ACX|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 23
pdb|4DH6|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(2r)-N-((2s,3r)-
1-(Benzo[d][1,
3]dioxol-5-Yl)-3-Hydroxy-4-((S)-6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridine]-4'-Ylamino)
Butan-2-Yl)-2-Methoxypropanamide
pdb|4FRI|A Chain A, Crystal Structure Of Bace1 In Complex With Biarylspiro
Aminooxazoline 6
pdb|4FRJ|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 9l
pdb|4FRK|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 11a
pdb|4DI2|A Chain A, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|B Chain B, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|C Chain C, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DUS|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
N-((2s,3r)-1-(4-
Fluorophenyl)-3-Hydroxy-4-((6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridin]-4'-Yl)amino) Butan-2-Yl)acetamide
pdb|4AZY|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound 10)
pdb|4B00|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound
(R)-41)
pdb|4B05|A Chain A, Preclinical Characterization Of Azd3839, A Novel Clinical
Candidate Bace1 Inhibitor For The Treatment Of Alzheimer
Disease
Length = 411
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 60 GASGSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGS 102
G GS +EM G G Y+VE+ VG+P Q L ++VDTGS
Sbjct: 13 GKKGSFVEMVDNLRGKSGQG-YYVEMTVGSPPQTLNILVDTGS 54
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|4FSL|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
Length = 412
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 60 GASGSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGS 102
G GS +EM G G Y+VE+ VG+P Q L ++VDTGS
Sbjct: 13 GKKGSFVEMVDNLRGKSGQG-YYVEMTVGSPPQTLNILVDTGS 54
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 75 DYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKAD 134
+Y Y+ EI +GTP Q +++ DTGS W+ C++ T A ++F A
Sbjct: 14 NYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSS-----KCSRLYT-ACVYHKLFDAS 67
Query: 135 LSSSFK 140
SSS+K
Sbjct: 68 DSSSYK 73
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 75 DYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKAD 134
+Y Y+ EI +GTP Q +++ DTGS W+ C++ T A ++F A
Sbjct: 10 NYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSS-----KCSRLYT-ACVYHKLFDAS 63
Query: 135 LSSSFK 140
SSS+K
Sbjct: 64 DSSSYK 69
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
Length = 333
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 75 DYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKAD 134
+Y Y+ EI +GTP Q +++ DTGS W+ C++ T A ++F A
Sbjct: 7 NYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSS-----KCSRLYT-ACVYHKLFDAS 60
Query: 135 LSSSFK 140
SSS+K
Sbjct: 61 DSSSYK 66
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 75 DYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKAD 134
+Y Y+ EI +GTP Q +++ DTGS W+ C++ T A ++F A
Sbjct: 14 NYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSS-----KCSRLYT-ACVYHKLFDAS 67
Query: 135 LSSSFK 140
SSS+K
Sbjct: 68 DSSSYK 73
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 75 DYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKAD 134
+Y Y+ EI +GTP Q +++ DTGS W+ C++ T A ++F A
Sbjct: 14 NYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSS-----KCSRLYT-ACVYHKLFDAS 67
Query: 135 LSSSFK 140
SSS+K
Sbjct: 68 DSSSYK 73
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 75 DYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKAD 134
+Y Y+ EI +GTP Q +++ DTGS W+ C++ T A ++F A
Sbjct: 14 NYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSS-----KCSRLYT-ACVYHKLFDAS 67
Query: 135 LSSSFK 140
SSS+K
Sbjct: 68 DSSSYK 73
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 75 DYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKAD 134
+Y Y+ EI +GTP Q +++ DTGS W+ C++ T A ++F A
Sbjct: 11 NYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSS-----KCSRLYT-ACVYHKLFDAS 64
Query: 135 LSSSFK 140
SSS+K
Sbjct: 65 DSSSYK 70
>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8c
pdb|2VA6|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 24
pdb|2VA7|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 27
Length = 455
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 60 GASGSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGS 102
G GS +EM G G Y+VE+ VG+P Q L ++VDTGS
Sbjct: 57 GKKGSFVEMVDNLRGKSGQG-YYVEMTVGSPPQTLNILVDTGS 98
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 75 DYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKAD 134
+Y Y+ EI +GTP Q +++ DTGS W+ C++ T A ++F A
Sbjct: 57 NYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSS-----KCSRLYT-ACVYHKLFDAS 110
Query: 135 LSSSFK 140
SSS+K
Sbjct: 111 DSSSYK 116
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid (2-Mercapto-Ethyl)- Amide
Length = 405
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 60 GASGSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGS 102
G GS +EM G G Y+VE+ VG+P Q L ++VDTGS
Sbjct: 14 GRRGSFVEMVDNLRGKSGQG-YYVEMTVGSPPQTLNILVDTGS 55
>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|B Chain B, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|C Chain C, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
Length = 405
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 60 GASGSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGS 102
G GS +EM G G Y+VE+ VG+P Q L ++VDTGS
Sbjct: 14 GRRGSFVEMVDNLRGKSGQG-YYVEMTVGSPPQTLNILVDTGS 55
>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(2,
6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto-
Butyramide
Length = 405
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 60 GASGSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGS 102
G GS +EM G G Y+VE+ VG+P Q L ++VDTGS
Sbjct: 14 GRRGSFVEMVDNLRGKSGQG-YYVEMTVGSPPQTLNILVDTGS 55
>pdb|2ZJH|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-(1-Benzyl-Piperidin-4-Yl)-4-Mercapto-Butyramide
pdb|2ZJL|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Bromo-2,3-Dimethoxy-Benzyl)-Piperidin-
4-Yl]-4-Mercapto-Butyramide
Length = 405
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 60 GASGSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGS 102
G GS +EM G G Y+VE+ VG+P Q L ++VDTGS
Sbjct: 14 GRRGSFVEMVDNLRGKSGQG-YYVEMTVGSPPQTLNILVDTGS 55
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Ixs
Length = 411
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 60 GASGSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGS 102
G GS +EM G G Y+VE+ VG+P Q L ++VDTGS
Sbjct: 20 GRRGSFVEMVDNLRGKSGQG-YYVEMTVGSPPQTLNILVDTGS 61
>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8L|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8V|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
L- L000430,469
pdb|2IRZ|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2IS0|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2PH6|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2OAH|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2P8H|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2NTR|A Chain A, Crystal Structure Of Human Bace-1 Bound To Inhibitor
pdb|2PH8|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2QZK|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
I21
pdb|2ZJM|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(4-Sulfamoyl-Phenoxy)-Acetamide
pdb|3FKT|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Spiropiperdine Iminohydantoin Inhibitor
Length = 405
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 60 GASGSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGS 102
G GS +EM G G Y+VE+ VG+P Q L ++VDTGS
Sbjct: 14 GRRGSFVEMVDNLRGKSGQG-YYVEMTVGSPPQTLNILVDTGS 55
>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6- ((1s,
2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One
pdb|3VV7|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-6-((1s,2r)-
2-(3'-Methoxybiphenyl-3-Yl)cyclopropyl)-3-
Methylpyrimidin-4(3h)-One
pdb|3VV8|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6-
((1s,
2r)-2-(3'-Methylbiphenyl-4-Yl)cyclopropyl)pyrimidin-
4(3h)-One
Length = 416
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 60 GASGSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGS 102
G GS +EM G G Y+VE+ VG+P Q L ++VDTGS
Sbjct: 17 GRRGSFVEMVDNLRGKSGQG-YYVEMTVGSPPQTLNILVDTGS 58
>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572
pdb|3KMX|B Chain B, Structure Of Bace Bound To Sch346572
pdb|3KMY|A Chain A, Structure Of Bace Bound To Sch12472
pdb|3KMY|B Chain B, Structure Of Bace Bound To Sch12472
pdb|3KN0|A Chain A, Structure Of Bace Bound To Sch708236
pdb|3KN0|B Chain B, Structure Of Bace Bound To Sch708236
pdb|3LNK|A Chain A, Structure Of Bace Bound To Sch743813
pdb|3LNK|B Chain B, Structure Of Bace Bound To Sch743813
pdb|4FRS|A Chain A, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
pdb|4FRS|B Chain B, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
Length = 395
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 60 GASGSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGS 102
G GS +EM G G Y+VE+ VG+P Q L ++VDTGS
Sbjct: 3 GRRGSFVEMVDNLRGKSGQG-YYVEMTVGSPPQTLNILVDTGS 44
>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432
pdb|3L58|B Chain B, Structure Of Bace Bound To Sch589432
pdb|3L59|A Chain A, Structure Of Bace Bound To Sch710413
pdb|3L59|B Chain B, Structure Of Bace Bound To Sch710413
pdb|3L5B|A Chain A, Structure Of Bace Bound To Sch713601
pdb|3L5B|B Chain B, Structure Of Bace Bound To Sch713601
pdb|3L5C|A Chain A, Structure Of Bace Bound To Sch723871
pdb|3L5C|B Chain B, Structure Of Bace Bound To Sch723871
pdb|3L5D|A Chain A, Structure Of Bace Bound To Sch723873
pdb|3L5D|B Chain B, Structure Of Bace Bound To Sch723873
pdb|3L5E|A Chain A, Structure Of Bace Bound To Sch736062
pdb|3L5E|B Chain B, Structure Of Bace Bound To Sch736062
pdb|3L5F|A Chain A, Structure Of Bace Bound To Sch736201
pdb|3L5F|B Chain B, Structure Of Bace Bound To Sch736201
pdb|4DJU|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJU|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJV|A Chain A, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJV|B Chain B, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJW|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJW|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJX|A Chain A, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJX|B Chain B, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJY|A Chain A, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4DJY|B Chain B, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4H1E|A Chain A, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H1E|B Chain B, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H3J|A Chain A, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4H3J|B Chain B, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4HA5|A Chain A, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4HA5|B Chain B, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4H3F|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3F|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3G|A Chain A, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3G|B Chain B, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3I|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3I|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
Length = 414
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 60 GASGSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGS 102
G GS +EM G G Y+VE+ VG+P Q L ++VDTGS
Sbjct: 15 GRRGSFVEMVDNLRGKSGQG-YYVEMTVGSPPQTLNILVDTGS 56
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|B Chain B, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|C Chain C, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3I25|A Chain A, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|B Chain B, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|C Chain C, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
Length = 406
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 60 GASGSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGS 102
G GS +EM G G Y+VE+ VG+P Q L ++VDTGS
Sbjct: 15 GRRGSFVEMVDNLRGKSGQG-YYVEMTVGSPPQTLNILVDTGS 56
>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485
pdb|2QK5|B Chain B, Structure Of Bace1 Bound To Sch626485
pdb|2QMD|A Chain A, Structure Of Bace Bound To Sch722924
pdb|2QMD|B Chain B, Structure Of Bace Bound To Sch722924
pdb|2QMF|A Chain A, Structure Of Bace Bound To Sch735310
pdb|2QMF|B Chain B, Structure Of Bace Bound To Sch735310
pdb|2QP8|A Chain A, Structure Of Bace Bound To Sch734723
pdb|2QP8|B Chain B, Structure Of Bace Bound To Sch734723
pdb|2QMG|A Chain A, Structure Of Bace Bound To Sch745966
pdb|2QMG|B Chain B, Structure Of Bace Bound To Sch745966
Length = 395
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 60 GASGSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGS 102
G GS +EM G G Y+VE+ VG+P Q L ++VDTGS
Sbjct: 3 GRRGSFVEMVDNLRGKSGQG-YYVEMTVGSPPQTLNILVDTGS 44
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|B Chain B, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|C Chain C, Potent Beta-Secretase 1 Inhibitor
pdb|3KYR|A Chain A, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|B Chain B, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|C Chain C, Bace-1 In Complex With A Norstatine Type Inhibitor
Length = 405
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 60 GASGSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGS 102
G GS +EM G G Y+VE+ VG+P Q L ++VDTGS
Sbjct: 14 GRRGSFVEMVDNLRGKSGQG-YYVEMTVGSPPQTLNILVDTGS 55
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)-
Acetamide
pdb|3H0B|A Chain A, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|B Chain B, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|C Chain C, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
Length = 405
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 60 GASGSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGS 102
G GS +EM G G Y+VE+ VG+P Q L ++VDTGS
Sbjct: 14 GRRGSFVEMVDNLRGKSGQG-YYVEMTVGSPPQTLNILVDTGS 55
>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHR|B Chain B, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHS|A Chain A, Crystal Structure Of Bace1 At Ph 4.0
pdb|2ZHT|A Chain A, Crystal Structure Of Bace1 At Ph 4.5
pdb|2ZHU|A Chain A, Crystal Structure Of Bace1 At Ph 5.0
pdb|2ZHV|A Chain A, Crystal Structure Of Bace1 At Ph 7.0
Length = 411
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 60 GASGSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGS 102
G GS +EM G G Y+VE+ VG+P Q L ++VDTGS
Sbjct: 12 GRRGSFVEMVDNLRGKSGQG-YYVEMTVGSPPQTLNILVDTGS 53
>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor
Length = 413
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 60 GASGSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGS 102
G GS +EM G G Y+VE+ VG+P Q L ++VDTGS
Sbjct: 14 GRRGSFVEMVDNLRGKSGQG-YYVEMTVGSPPQTLNILVDTGS 55
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|2F3E|A Chain A, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|B Chain B, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|C Chain C, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3F|A Chain A, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|B Chain B, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|C Chain C, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|3DUY|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DV1|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV5|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3K5C|A Chain A, Human Bace-1 Complex With Nb-216
pdb|3K5C|B Chain B, Human Bace-1 Complex With Nb-216
pdb|3K5C|C Chain C, Human Bace-1 Complex With Nb-216
pdb|3K5F|A Chain A, Human Bace-1 Complex With Ayh011
pdb|3K5F|B Chain B, Human Bace-1 Complex With Ayh011
pdb|3K5F|C Chain C, Human Bace-1 Complex With Ayh011
pdb|3K5G|A Chain A, Human Bace-1 Complex With Bjc060
pdb|3K5G|B Chain B, Human Bace-1 Complex With Bjc060
pdb|3K5G|C Chain C, Human Bace-1 Complex With Bjc060
pdb|3PI5|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3QBH|A Chain A, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|B Chain B, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|C Chain C, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3VEU|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Avi326
pdb|3VF3|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bqq711
pdb|3VG1|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Soaking Experiment
pdb|4D83|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D88|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxq490
pdb|4D89|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Soaking Experiment
pdb|4D8C|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
Length = 402
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 60 GASGSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGS 102
G GS +EM G G Y+VE+ VG+P Q L ++VDTGS
Sbjct: 10 GRRGSFVEMVDNLRGKSGQG-YYVEMTVGSPPQTLNILVDTGS 51
>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|3K5D|A Chain A, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|B Chain B, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|C Chain C, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3MSK|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3MSL|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3S2O|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|4D85|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bvi151
Length = 408
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 60 GASGSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGS 102
G GS +EM G G Y+VE+ VG+P Q L ++VDTGS
Sbjct: 10 GRRGSFVEMVDNLRGKSGQG-YYVEMTVGSPPQTLNILVDTGS 51
>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQR|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|C Chain C, Crystal Structure Of Bace1 With Its Inhibitor
Length = 433
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 60 GASGSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGS 102
G GS +EM G G Y+VE+ VG+P Q L ++VDTGS
Sbjct: 34 GRRGSFVEMVDNLRGKSGQG-YYVEMTVGSPPQTLNILVDTGS 75
>pdb|3TPJ|A Chain A, Apo Structure Of Bace1
pdb|3TPL|A Chain A, Apo Structure Of Bace1
pdb|3TPL|B Chain B, Apo Structure Of Bace1
pdb|3TPL|C Chain C, Apo Structure Of Bace1
pdb|3TPP|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQP|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQU|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQW|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQX|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DV9|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4FGX|A Chain A, Crystal Structure Of Bace1 With Novel Inhibitor
Length = 433
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 60 GASGSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGS 102
G GS +EM G G Y+VE+ VG+P Q L ++VDTGS
Sbjct: 34 GRRGSFVEMVDNLRGKSGQG-YYVEMTVGSPPQTLNILVDTGS 75
>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1
Inhibitors: Prime Side Chromane-Containing Inhibitors
Length = 408
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 60 GASGSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGS 102
G GS +EM G G Y+VE+ VG+P Q L ++VDTGS
Sbjct: 10 GRRGSFVEMVDNLRGKSGQG-YYVEMTVGSPPQTLNILVDTGS 51
>pdb|2QU2|A Chain A, Bace1 With Compound 1
pdb|2QU3|A Chain A, Bace1 With Compound 2
pdb|2ZDZ|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 3.B.10
pdb|2ZE1|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 6g
pdb|3IGB|A Chain A, Bace-1 With Compound 3
pdb|3IN3|A Chain A, Bace1 With Compound 30
pdb|3IN4|A Chain A, Bace1 With Compound 38
pdb|3IND|A Chain A, Bace1 With The Aminohydantoin Compound 29
pdb|3INE|A Chain A, Bace1 With The Aminohydantoin Compound S-34
pdb|3INF|A Chain A, Bace1 With The Aminohydantoin Compound 37
pdb|3INH|A Chain A, Bace1 With The Aminohydantoin Compound R-58
pdb|3LHG|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 4g
pdb|3L38|A Chain A, Bace1 In Complex With The Aminopyridine Compound 44
pdb|3L3A|A Chain A, Bace-1 With The Aminopyridine Compound 32
pdb|3OOZ|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 102
pdb|3S7L|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
pdb|3S7M|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
Length = 415
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 60 GASGSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGS 102
G GS +EM G G Y+VE+ VG+P Q L ++VDTGS
Sbjct: 10 GRRGSFVEMVDNLRGKSGQG-YYVEMTVGSPPQTLNILVDTGS 51
>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1
pdb|3BUF|A Chain A, Bace-1 Complexed With Compound 2
pdb|3BUG|A Chain A, Bace-1 Complexed With Compound 3
pdb|3BUH|A Chain A, Bace-1 Complexed With Compound 4
Length = 409
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 60 GASGSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGS 102
G GS +EM G G Y+VE+ VG+P Q L ++VDTGS
Sbjct: 10 GRRGSFVEMVDNLRGKSGQG-YYVEMTVGSPPQTLNILVDTGS 51
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 23/28 (82%), Gaps = 1/28 (3%)
Query: 75 DYGTGMYFVEIKVGTPSQKLRLIVDTGS 102
D G G Y++E+ +GTP QKL+++VDTGS
Sbjct: 10 DSGRG-YYLEMLIGTPPQKLQILVDTGS 36
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 55/136 (40%), Gaps = 18/136 (13%)
Query: 323 DSGTTLTFLAEPAYKPVVAALEMS--LSRYQRLKRDAPFEYCFNSTGFDESSVPKLVFHF 380
DSGTTL L + + VV A+ + + + C+ ++ S PK+ +
Sbjct: 226 DSGTTLLRLPQKVFDAVVEAVARASLIPEFSDGFWTGSQLACWTNSETPWSYFPKISIYL 285
Query: 381 ADGARFEPHTKSYIIRVAHGI------------RCLGFVSATWPGASAIGNIMQQNYFWE 428
D E ++S+ I + + C F + A IG + + ++
Sbjct: 286 RD----ENSSRSFRITILPQLYIQPMMGAGLNYECYRFGISPSTNALVIGATVMEGFYVI 341
Query: 429 FDLLKDRLGFAPSTCA 444
FD + R+GFA S CA
Sbjct: 342 FDRAQKRVGFAASPCA 357
>pdb|1EPR|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-135, 040
Length = 330
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 61 ASGSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWI 107
++GSA P+ + D Y +++GTP+Q L L DTGS W+
Sbjct: 1 STGSATTTPIDSLDD----AYITPVQIGTPAQTLNLDFDTGSSDLWV 43
>pdb|1ER8|E Chain E, The Active Site Of Aspartic Proteinases
pdb|2ER0|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes
pdb|2ER6|E Chain E, The Structure Of A Synthetic Pepsin Inhibitor Complexed
With Endothiapepsin.
pdb|2ER7|E Chain E, X-Ray Analyses Of Aspartic Proteinases.Iii.
Three-Dimensional Structure Of Endothiapepsin Complexed
With A Transition-State Isostere Inhibitor Of Renin At
1.6 Angstroms Resolution
pdb|2ER9|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes.
pdb|3ER3|E Chain E, The Active Site Of Aspartic Proteinases
pdb|3ER5|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER1|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER2|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER4|E Chain E, High-Resolution X-Ray Analyses Of Renin Inhibitor-Aspartic
Proteinase Complexes
pdb|5ER1|E Chain E, A Rational Approach To The Design Of Antihypertensives.
X-Ray Studies Of Complexes Between Aspartic Proteinases
And Aminoalcohol Renin Inhibitors
pdb|5ER2|E Chain E, High-Resolution X-Ray Diffraction Study Of The Complex
Between Endothiapepsin And An Oligopeptide Inhibitor.
The Analysis Of The Inhibitor Binding And Description Of
The Rigid Body Shift In The Enzyme
pdb|1EED|P Chain P, X-Ray Crystallographic Analysis Of Inhibition Of
Endothiapepsin By Cyclohexyl Renin Inhibitors
pdb|1ENT|E Chain E, X-Ray Analyses Of Aspartic Proteinases. The
Three-Dimensional Structure At 2.1 Angstroms Resolution
Of Endothiapepsin
pdb|1EPL|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPM|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPN|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPO|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Cp-81,282 (Mor Phe Nle Chf Nme)
pdb|1EPP|E Chain E, Endothia Aspartic Proteinase (endothiapepsin) Complexed
With Pd-130, 693 (mas Phe Lys+mtf Sta Mba)
pdb|1EPQ|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-133, 450 (Sot Phe Gly+scc Gcl)
pdb|1E5O|E Chain E, Endothiapepsin Complex With Inhibitor Db2
pdb|1E81|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd61395
pdb|1E82|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd59601
pdb|1E80|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd56133
pdb|1OD1|A Chain A, Endothiapepsin Pd135,040 Complex
pdb|4APE|A Chain A, The Active Site Of Aspartic Proteinases
pdb|2V00|A Chain A, X-Ray Crystal Structure Of Endothiapepsin Complexed With
Compound 1
pdb|3LZY|A Chain A, Crystal Structure Of Endothiapesin In Complex With Xenon
pdb|3PB5|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBZ|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCW|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCZ|A Chain A, Endothiapepsin In Complex With Benzamidine
pdb|3PGI|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PRS|A Chain A, Endothiapepsin In Complex With Ritonavir
pdb|3PI0|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLL|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PM4|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMU|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMY|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PSY|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3PWW|A Chain A, Endothiapepsin In Complex With Saquinavir
pdb|3Q6Y|A Chain A, Endothiapepsin In Complex With A Pyrrolidine Based
Inhibitor
pdb|3T6I|A Chain A, Endothiapepsin In Complex With An Azepin Derivative
pdb|3T7P|A Chain A, Endothiapepsin In Complex With A Hydrazide Derivative
pdb|3T7Q|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3T7X|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
Length = 330
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 61 ASGSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWI 107
++GSA P+ + D Y +++GTP+Q L L DTGS W+
Sbjct: 1 STGSATTTPIDSLDD----AYITPVQIGTPAQTLNLDFDTGSSDLWV 43
>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|B Chain B, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|C Chain C, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2P83|A Chain A, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|B Chain B, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|C Chain C, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
Length = 455
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 60 GASGSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGS 102
G GS +EM G G Y+VE+ VG+P Q L ++VDTGS
Sbjct: 57 GRRGSFVEMVDNLRGKSGQG-YYVEMTVGSPPQTLNILVDTGS 98
>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132
pdb|3LPI|B Chain B, Structure Of Bace Bound To Sch745132
pdb|3LPJ|A Chain A, Structure Of Bace Bound To Sch743641
pdb|3LPJ|B Chain B, Structure Of Bace Bound To Sch743641
pdb|3LPK|A Chain A, Structure Of Bace Bound To Sch747123
pdb|3LPK|B Chain B, Structure Of Bace Bound To Sch747123
pdb|3OHF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHH|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3OHH|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3R2F|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3SKF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKG|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|4FSE|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
Length = 455
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 60 GASGSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGS 102
G GS +EM G G Y+VE+ VG+P Q L ++VDTGS
Sbjct: 56 GRRGSFVEMVDNLRGKSGQG-YYVEMTVGSPPQTLNILVDTGS 97
>pdb|1GVT|A Chain A, Endothiapepsin Complex With Cp-80,794
pdb|1GVU|A Chain A, Endothiapepsin Complex With H189
pdb|1GVV|A Chain A, Five Atomic Resolution Structures Of Endothiapepsin
Inhibitor Complexes; Implications For The Aspartic
Proteinase Mechanism
pdb|1GVW|A Chain A, Endothiapepsin Complex With Pd-130,328
pdb|1GVX|A Chain A, Endothiapepsin Complexed With H256
pdb|1OEX|A Chain A, Atomic Resolution Structure Of Endothiapepsin In Complex
With A Hydroxyethylene Transition State Analogue
Inhibitor H261
pdb|2JJI|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2JJJ|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2VS2|A Chain A, Neutron Diffraction Structure Of Endothiapepsin In Complex
With A Gem- Diol Inhibitor.
pdb|3URJ|A Chain A, Type Iv Native Endothiapepsin
pdb|3URI|A Chain A, Endothiapepsin-Db5 Complex.
pdb|3URL|A Chain A, Endothiapepsin-Db6 Complex.
pdb|1OEW|A Chain A, Atomic Resolution Structure Of Native Endothiapepsin
Length = 329
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 61 ASGSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWI 107
++GSA P+ + D Y +++GTP+Q L L DTGS W+
Sbjct: 1 STGSATTTPIDSLDD----AYITPVQIGTPAQTLNLDFDTGSSDLWV 43
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 75 DYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKAD 134
D+ Y + + +GTP Q L+ DTGS +W+ H G C G +R F
Sbjct: 14 DFDLEEYAIPVSIGTPGQDFYLLFDTGSSDTWVP---HKG--CDNSEGCVG--KRFFDPS 66
Query: 135 LSSSFK 140
SS+FK
Sbjct: 67 SSSTFK 72
>pdb|1GKT|A Chain A, Neutron Laue Diffraction Structure Of Endothiapepsin
Complexed With Transition State Analogue Inhibitor H261
Length = 329
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 62 SGSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWI 107
+GSA P+ + D Y +++GTP+Q L L DTGS W+
Sbjct: 2 TGSATTTPIDSLDD----AYITPVQIGTPAQTLNLDFDTGSSDLWV 43
>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|B Chain B, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|C Chain C, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
Length = 390
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 62 SGSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGS 102
+GS +EM G G Y+VE+ VG+P Q L ++VDTGS
Sbjct: 1 AGSFVEMVDNLRGKSGQG-YYVEMTVGSPPQTLNILVDTGS 40
>pdb|4B1C|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 375
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 63 GSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGS 102
GS +EM G G Y+VE+ VG+P Q L ++VDTGS
Sbjct: 3 GSFVEMVDNLRGKSGQG-YYVEMTVGSPPQTLNILVDTGS 41
>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1FKN|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1M4H|A Chain A, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
pdb|1M4H|B Chain B, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
Length = 391
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 63 GSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGS 102
GS +EM G G Y+VE+ VG+P Q L ++VDTGS
Sbjct: 3 GSFVEMVDNLRGKSGQG-YYVEMTVGSPPQTLNILVDTGS 41
>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor
pdb|4DPI|A Chain A, Bace-1 In Complex With Hea-Macrocyclic Inhibitor, Mv078512
Length = 391
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 63 GSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGS 102
GS +EM G G Y+VE+ VG+P Q L ++VDTGS
Sbjct: 3 GSFVEMVDNLRGKSGQG-YYVEMTVGSPPQTLNILVDTGS 41
>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor (2)
pdb|2IQG|A Chain A, Crystal Structure Of Hydroxyethyl Secondary Amine-Based
Peptidomimetic Inhibitor Of Human Beta-Secretase (Bace)
pdb|3IVH|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|B Chain B, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|C Chain C, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3NSH|A Chain A, Bace-1 In Complex With Eln475957
pdb|3NSH|B Chain B, Bace-1 In Complex With Eln475957
pdb|3NSH|C Chain C, Bace-1 In Complex With Eln475957
pdb|3N4L|A Chain A, Bace-1 In Complex With Eln380842
pdb|3N4L|B Chain B, Bace-1 In Complex With Eln380842
pdb|3N4L|C Chain C, Bace-1 In Complex With Eln380842
Length = 406
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 63 GSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGS 102
GS +EM G G Y+VE+ VG+P Q L ++VDTGS
Sbjct: 3 GSFVEMVDNLRGKSGQG-YYVEMTVGSPPQTLNILVDTGS 41
>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596
pdb|3CIB|B Chain B, Structure Of Bace Bound To Sch727596
pdb|3CIC|A Chain A, Structure Of Bace Bound To Sch709583
pdb|3CIC|B Chain B, Structure Of Bace Bound To Sch709583
pdb|3CID|A Chain A, Structure Of Bace Bound To Sch726222
pdb|3CID|B Chain B, Structure Of Bace Bound To Sch726222
pdb|4FS4|A Chain A, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
pdb|4FS4|B Chain B, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
Length = 390
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 63 GSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGS 102
GS +EM G G Y+VE+ VG+P Q L ++VDTGS
Sbjct: 1 GSFVEMVDNLRGKSGQG-YYVEMTVGSPPQTLNILVDTGS 39
>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|B Chain B, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|C Chain C, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|D Chain D, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1XS7|D Chain D, Crystal Structure Of A Cycloamide-Urethane-Derived Novel
Inhibitor Bound To Human Brain Memapsin 2
(Beta-Secretase).
pdb|1XN2|A Chain A, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|B Chain B, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|C Chain C, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|D Chain D, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN3|A Chain A, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|B Chain B, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|C Chain C, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|D Chain D, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|2G94|A Chain A, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|B Chain B, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|C Chain C, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|D Chain D, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2P4J|A Chain A, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|B Chain B, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|C Chain C, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|D Chain D, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2VKM|A Chain A, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|B Chain B, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|C Chain C, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|D Chain D, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|3UFL|A Chain A, Discovery Of Pyrrolidine-Based B-Secretase Inhibitors:
Lead Advancement Through Conformational Design For
Maintenance Of Ligand Binding Efficiency
Length = 389
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 63 GSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGS 102
GS +EM G G Y+VE+ VG+P Q L ++VDTGS
Sbjct: 1 GSFVEMVDNLRGKSGQG-YYVEMTVGSPPQTLNILVDTGS 39
>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
pdb|4B1E|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 388
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 63 GSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGS 102
GS +EM G G Y+VE+ VG+P Q L ++VDTGS
Sbjct: 1 GSFVEMVDNLRGKSGQG-YYVEMTVGSPPQTLNILVDTGS 39
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1
pdb|3UDJ|A Chain A, Crystal Structure Of Bace With Compound 5
pdb|3UDK|A Chain A, Crystal Structure Of Bace With Compound 6
pdb|3UDM|A Chain A, Crystal Structure Of Bace With Compound 8
pdb|3UDN|A Chain A, Crystal Structure Of Bace With Compound 9
pdb|3UDP|A Chain A, Crystal Structure Of Bace With Compound 12
pdb|3UDQ|A Chain A, Crystal Structure Of Bace With Compound 13
pdb|3UDR|A Chain A, Crystal Structure Of Bace With Compound 14
pdb|3UDY|A Chain A, Crystal Structure Of Bace With Compound 11
pdb|4FM7|A Chain A, Crystal Structure Of Bace With Compound 14g
pdb|4FM8|A Chain A, Crystal Structure Of Bace With Compound 12a
Length = 404
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 63 GSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGS 102
GS +EM G G Y+VE+ VG+P Q L ++VDTGS
Sbjct: 1 GSFVEMVDNLRGKSGQG-YYVEMTVGSPPQTLNILVDTGS 39
>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With
Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h-
Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide
Length = 412
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 63 GSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGS 102
GS +EM G G Y+VE+ VG+P Q L ++VDTGS
Sbjct: 1 GSFVEMVDNLRGKSGQG-YYVEMTVGSPPQTLNILVDTGS 39
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 75 DYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWI 107
+Y Y+ EI +GTP Q ++I DTGS W+
Sbjct: 11 NYLNSQYYGEIGIGTPPQTFKVIFDTGSANLWV 43
>pdb|2BJU|A Chain A, Plasmepsin Ii Complexed With A Highly Active Achiral
Inhibitor
Length = 453
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 60 GASGSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTK 119
G+S IE+ D+ M++ + +VG Q I+DTGS W+ C
Sbjct: 124 GSSNDNIEL-----VDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLT 178
Query: 120 KGTIAGSRRRVFKAD 134
K S+ R ++ D
Sbjct: 179 KHLYDSSKSRTYEKD 193
>pdb|1LF3|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Eh58
pdb|1LF4|A Chain A, Structure Of Plasmepsin Ii
pdb|1XDH|A Chain A, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1XDH|B Chain B, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1W6H|A Chain A, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6H|B Chain B, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6I|A Chain A, Plasmepsin Ii-Pepstatin A Complex
pdb|1W6I|C Chain C, Plasmepsin Ii-Pepstatin A Complex
Length = 331
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 60 GASGSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTK 119
G+S IE+ D+ M++ + +VG Q I+DTGS W+ C
Sbjct: 2 GSSNDNIEL-----VDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLT 56
Query: 120 KGTIAGSRRRVFKAD 134
K S+ R ++ D
Sbjct: 57 KHLYDSSKSRTYEKD 71
>pdb|1M43|A Chain A, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1M43|B Chain B, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1LEE|A Chain A, Crystal Structure Of Plasmepsin From P. Falciparum In
Complex With Inhibitor Rs367
pdb|1LF2|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Rs370
Length = 331
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 60 GASGSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTK 119
G+S IE+ D+ M++ + +VG Q I+DTGS W+ C
Sbjct: 2 GSSNDNIEL-----VDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLT 56
Query: 120 KGTIAGSRRRVFKAD 134
K S+ R ++ D
Sbjct: 57 KHLYDSSKSRTYEKD 71
>pdb|1PFZ|A Chain A, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|B Chain B, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|C Chain C, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|D Chain D, Proplasmepsin Ii From Plasmodium Falciparum
Length = 380
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 60 GASGSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTK 119
G+S IE+ D+ M++ + +VG Q I+DTGS W+ C
Sbjct: 51 GSSNDNIEL-----VDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLT 105
Query: 120 KGTIAGSRRRVFKAD 134
K S+ R ++ D
Sbjct: 106 KHLYDSSKSRTYEKD 120
>pdb|1SMV|A Chain A, Primary Structure Of Sesbania Mosaic Virus Coat Protein:
Its Implications To The Assembly And Architecture Of The
Virus
pdb|1SMV|B Chain B, Primary Structure Of Sesbania Mosaic Virus Coat Protein:
Its Implications To The Assembly And Architecture Of The
Virus
pdb|1SMV|C Chain C, Primary Structure Of Sesbania Mosaic Virus Coat Protein:
Its Implications To The Assembly And Architecture Of The
Virus
Length = 266
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 94 LRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKADLSSSFKTIPCS 145
LR + D S++SW+S RY PSC + AGS F+ D++ T+P S
Sbjct: 106 LRGVADNWSKYSWLSVRYTYIPSC--PSSTAGSIHMGFQYDMA---DTVPVS 152
>pdb|3QRV|A Chain A, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QRV|B Chain B, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QS1|A Chain A, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|B Chain B, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|C Chain C, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|D Chain D, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
Length = 336
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 60 GASGSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTK 119
G +G ++ + D MY+ E ++G QK I DTGS W+ C
Sbjct: 7 GNAGDSVTL-----NDVANVMYYGEAQIGDNKQKFAFIFDTGSANLWVPSAQCNTIGCKT 61
Query: 120 KGTIAGSRRRVFKAD 134
K ++ + ++ D
Sbjct: 62 KNLYDSNKSKTYEKD 76
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5
pdb|1LYW|C Chain C, Cathepsin D At Ph 7.5
pdb|1LYW|E Chain E, Cathepsin D At Ph 7.5
pdb|1LYW|G Chain G, Cathepsin D At Ph 7.5
pdb|1LYA|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 97
Score = 34.3 bits (77), Expect = 0.14, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 74 RDYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHC 113
++Y Y+ EI +GTP Q ++ DTGS W+ HC
Sbjct: 8 KNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVP-SIHC 46
>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|B Chain B, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|C Chain C, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|3IXJ|A Chain A, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|B Chain B, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|C Chain C, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|4GID|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|C Chain C, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|D Chain D, Structure Of Beta-Secretase Complexed With Inhibitor
Length = 388
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 81 YFVEIKVGTPSQKLRLIVDTGS 102
Y+VE+ VG+P Q L ++VDTGS
Sbjct: 17 YYVEMTVGSPPQTLNILVDTGS 38
>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
pdb|4EXG|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
Length = 386
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 81 YFVEIKVGTPSQKLRLIVDTGS 102
Y+VE+ VG+P Q L ++VDTGS
Sbjct: 15 YYVEMTVGSPPQTLNILVDTGS 36
>pdb|2VIE|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-1-Benzyl-2-Hydroxy-
3-((1,1,
5-Trimethylhexyl)amino)propyl)-3-(Ethylamino)-5-(2-
Oxopyrrolidin-1-Yl)benzamide
pdb|2VIJ|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(1,2,3,4-Tetrahydro-1-Naphthalenylamino)
Propyl)benzamide
pdb|2VIY|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Pentylsulfonyl)benzamide
pdb|2VIZ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-methyl-2-oxoethyl)amino)-2-hydroxy-1-
(
Phenylmethyl)propyl)-3-(2-oxo-1-pyrrolidinyl)-5-
(propyloxy) Benzamide
pdb|2VJ6|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2VJ7|A Chain A, Human Bace-1 In Complex With 3-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-1-(Phenylmethyl)-3-(((3-(Trifluoromethyl)phenyl)
Methyl)amino)propyl)-5-(2-Oxo-1-Pyrrolidinyl)benzamide
pdb|2VJ9|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-3-(Cyclohexylamino)-
2-Hydroxy-1-(Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-
Oxo- 1-Pyrrolidinyl)benzamide
pdb|2VNM|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino) Propyl)benzamide
pdb|2VNN|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF4|A Chain A, Human Bace-1 In Complex With
6-Ethyl-1-Methyl-N-((1s)-2-Oxo-
1-(Phenylmethyl)-3-(Tetrahydro-2h-Pyran-4-
Ylamino)propyl)-
1,3,4,6-Tetrahydro(1,2)thiazepino(5,4,3-Cd)indole-8-
Carboxamide 2,2-Dioxide
pdb|2WEZ|A Chain A, Human Bace-1 In Complex With
1-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-4-(2-Oxo-1-Pyrrolidinyl)-1h-Indole-6-Carboxamide
pdb|2WF0|A Chain A, Human Bace-1 In Complex With
4-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-8-(2-Oxo-1-Pyrrolidinyl)-6-Quinolinecarboxamide
pdb|2WF1|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl(Methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF2|A Chain A, Human Bace-1 In Complex With
8-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4,7,8-Tetrahydro-1h,6h-(1,2,5)
Thiadiazepino(5,4,3-De)quinoxaline-10-Carboxamide 2,2-
Dioxide
pdb|2WF3|A Chain A, Human Bace-1 In Complex With 6-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-3-(((3-(Methyloxy)phenyl)methyl)amino)-1-(
Phenylmethyl)propyl)-1-Methyl-1,3,4,5-Tetrahydro-2,1-
Benzothiazepine-8-Carboxamide 2,2-Dioxide
pdb|2XFI|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-((Methylsulfonyl)(Phenyl)amino)
Benzamide
pdb|2XFJ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2XFK|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
(
Phenylmethyl)propyl)-3-(Ethylamino)-5-((Methylsulfonyl)(
Phenyl)amino)benzamide
Length = 392
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 81 YFVEIKVGTPSQKLRLIVDTGS 102
Y+VE+ VG+P Q L ++VDTGS
Sbjct: 15 YYVEMTVGSPPQTLNILVDTGS 36
>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a
Length = 385
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 81 YFVEIKVGTPSQKLRLIVDTGS 102
Y+VE+ VG+P Q L ++VDTGS
Sbjct: 14 YYVEMTVGSPPQTLNILVDTGS 35
>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1
pdb|2Q11|B Chain B, Structure Of Bace Complexed To Compound 1
pdb|2Q11|C Chain C, Structure Of Bace Complexed To Compound 1
Length = 388
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 81 YFVEIKVGTPSQKLRLIVDTGS 102
Y+VE+ VG+P Q L ++VDTGS
Sbjct: 17 YYVEMTVGSPPQTLNILVDTGS 38
>pdb|1IBQ|A Chain A, Aspergillopepsin From Aspergillus Phoenicis
pdb|1IBQ|B Chain B, Aspergillopepsin From Aspergillus Phoenicis
Length = 325
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 156 LFSLTFCPTPTSPCAYDYRYADGSAAKGIFGKERVTIGLENGGKTRIEEVVMGCSDTIQG 215
L++ + T S ++D Y DGS+A G ++ VT+G K +E S+ +Q
Sbjct: 55 LYTPSSSATKLSGYSWDISYGDGSSASGDVYRDTVTVGGVTTNKQAVEAASKISSEFVQD 114
Query: 216 QIFAEADGVLGLSYDKYSFAQ 236
DG+LGL++ + Q
Sbjct: 115 ---TANDGLLGLAFSSINTVQ 132
>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex
Lacteus
Length = 340
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 81 YFVEIKVGTPSQKLRLIVDTGSEFSWISC 109
Y V + VG+P+ L+VDTGS +W+
Sbjct: 14 YVVNVGVGSPATTYSLLVDTGSSNTWLGA 42
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans
pdb|2H6T|A Chain A, Secreted Aspartic Proteinase (Sap) 3 From Candida Albicans
Complexed With Pepstatin A
Length = 340
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Query: 81 YFVEIKVGTPSQKLRLIVDTGSEFSW-----ISCRYHCGPS---CTKKGT 122
Y +I VG+ QKL +++DTGS W +SC+ G C +GT
Sbjct: 14 YASDITVGSNKQKLTVVIDTGSSDLWVPDSQVSCQAGQGQDPNFCKNEGT 63
>pdb|1SME|A Chain A, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1SME|B Chain B, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1ME6|A Chain A, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1ME6|B Chain B, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1XE5|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE5|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|2IGX|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|B Chain B, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2R9B|A Chain A, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
pdb|2R9B|B Chain B, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
Length = 329
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 26/60 (43%)
Query: 75 DYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKAD 134
D+ M++ + +VG Q I+DTGS W+ C K S+ R ++ D
Sbjct: 10 DFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKD 69
>pdb|3F9Q|A Chain A, Re-Refinement Of Uncomplexed Plasmepsin Ii From Plasmodium
Falciparum
Length = 329
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 26/60 (43%)
Query: 75 DYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKAD 134
D+ M++ + +VG Q I+DTGS W+ C K S+ R ++ D
Sbjct: 10 DFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKD 69
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 62/275 (22%), Positives = 104/275 (37%), Gaps = 55/275 (20%)
Query: 81 YFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKADLSSSFK 140
Y +I +G+ QK +IVDTGS W+ ++ + R +
Sbjct: 14 YAADITIGSNKQKFNVIVDTGSSDLWV-----------PDASVTCDKPRPGQ-------- 54
Query: 141 TIPCSSDMCKSE-FARLFSLTFCPTPTSPCAYDYRYADGSAAKGIFGKERVTIGLENGGK 199
S+D CK + S T +P + Y DGS+++G K+ T+G GG
Sbjct: 55 ----SADFCKGKGIYTPKSSTTSQNLGTP--FYIGYGDGSSSQGTLYKD--TVGF--GGA 104
Query: 200 TRIEEVVMGCSDTIQGQIFAEADGVLGLSYDKYSFAQKVTNGSTFAR-----GKFAYCLV 254
+ ++V + T Q G+LG+ Y A N + K AY L
Sbjct: 105 SITKQVFADITKTSIPQ------GILGIGYKTNEAAGDYDNVPVTLKNQGVIAKNAYSL- 157
Query: 255 DHLSHKNVSN-YLIFGEESKRMRMRMRYTLLGL-IGPDYXXXXXXXXXXXXMLNIPSQVW 312
+L+ N + +IFG K + +L+ + + D NI +
Sbjct: 158 -YLNSPNAATGQIIFGGVDK---AKYSGSLIAVPVTSDRELRITLNSLKAVGKNINGNI- 212
Query: 313 DFNRGGGTAFDSGTTLTFLAEPAYKPVVAALEMSL 347
DSGTT+T+L + + ++ A + L
Sbjct: 213 ------DVLLDSGTTITYLQQDVAQDIIDAFQAEL 241
>pdb|3C9X|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase
pdb|3EMY|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase Complexed With Pepstatin A
Length = 329
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 62 SGSAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWI 107
+GSA P D Y + +GTP+Q L L DTGS W+
Sbjct: 2 TGSAPNHP----SDSADSEYITSVSIGTPAQVLPLDFDTGSSDLWV 43
>pdb|1X35|A Chain A, Recombinant T3 Capsid Of A Site Specific Mutant Of Semv Cp
pdb|1X35|B Chain B, Recombinant T3 Capsid Of A Site Specific Mutant Of Semv Cp
pdb|1X35|C Chain C, Recombinant T3 Capsid Of A Site Specific Mutant Of Semv Cp
Length = 268
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 94 LRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKADLSSSFKTIPCS 145
LR + S++SW+S RY PSC + AGS F+ D++ T+P S
Sbjct: 108 LRGVAANWSKYSWLSVRYTYIPSC--PSSTAGSIHMGFQYDMA---DTVPVS 154
>pdb|1X33|A Chain A, T=3 Recombinant Capsid Of Semv Cp
pdb|1X33|B Chain B, T=3 Recombinant Capsid Of Semv Cp
pdb|1X33|C Chain C, T=3 Recombinant Capsid Of Semv Cp
Length = 268
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 94 LRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKADLSSSFKTIPCS 145
LR + S++SW+S RY PSC + AGS F+ D++ T+P S
Sbjct: 108 LRGVAANWSKYSWLSVRYTYIPSC--PSSTAGSIHMGFQYDMA---DTVPVS 154
>pdb|2VQ0|A Chain A, Capsid Structure Of Sesbania Mosaic Virus Coat Protein
Deletion Mutant Rcp(Delta 48 To 59)
pdb|2VQ0|B Chain B, Capsid Structure Of Sesbania Mosaic Virus Coat Protein
Deletion Mutant Rcp(Delta 48 To 59)
pdb|2VQ0|C Chain C, Capsid Structure Of Sesbania Mosaic Virus Coat Protein
Deletion Mutant Rcp(Delta 48 To 59)
Length = 256
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 94 LRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKADLSSSFKTIPCS 145
LR + S++SW+S RY PSC + AGS F+ D++ T+P S
Sbjct: 96 LRGVAANWSKYSWLSVRYTYIPSC--PSSTAGSIHMGFQYDMA---DTVPVS 142
>pdb|1VB4|A Chain A, T1 Capsid Structure Of Sesbania Mosaic Virus Coat Protein
Deletion Mutant Cp-N(Delta)36
Length = 232
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 94 LRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKADLSSSFKTIPCS 145
LR + S++SW+S RY PSC + AGS F+ D++ T+P S
Sbjct: 72 LRGVAANWSKYSWLSVRYTYIPSC--PSSTAGSIHMGFQYDMA---DTVPVS 118
>pdb|1VAK|A Chain A, T1 Capsid Structure Of Sesbania Mosaic Virus Coat Protein
Deletion Mutant Cp-N(Delta)65
Length = 203
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 94 LRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKADLSSSFKTIPCS 145
LR + S++SW+S RY PSC + AGS F+ D++ T+P S
Sbjct: 43 LRGVAANWSKYSWLSVRYTYIPSC--PSSTAGSIHMGFQYDMA---DTVPVS 89
>pdb|2WLP|A Chain A, Sesbania Mosaic Virus Capsid Protein Dimer Mutant
(Rcp-Del- N65-W170k)
pdb|2WLP|B Chain B, Sesbania Mosaic Virus Capsid Protein Dimer Mutant
(Rcp-Del- N65-W170k)
Length = 203
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 94 LRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKADLSSSFKTIPCS 145
LR + S++SW+S RY PSC + AGS F+ D++ T+P S
Sbjct: 43 LRGVAANWSKYSWLSVRYTYIPSC--PSSTAGSIHMGFQYDMA---DTVPVS 89
>pdb|1X36|A Chain A, T1 Capsid Of An Amino-Terminal Deletion Mutant Of Semv Cp
Length = 237
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 94 LRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKADLSSSFKTIPCS 145
LR + S++SW+S RY PSC + AGS F+ D++ T+P S
Sbjct: 77 LRGVAANWSKYSWLSVRYTYIPSC--PSSTAGSIHMGFQYDMA---DTVPVS 123
>pdb|3FNS|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) From
Plasmodium Falciparum
pdb|3FNS|B Chain B, Crystal Structure Of Histo-Aspartic Protease (Hap) From
Plasmodium Falciparum
pdb|3FNT|A Chain A, Crystal Structure Of Pepstatin A Bound Histo-aspartic
Protease (hap) From Plasmodium Falciparum
pdb|3FNU|A Chain A, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|B Chain B, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|C Chain C, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|D Chain D, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
Length = 332
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 24/61 (39%)
Query: 74 RDYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKA 133
+D + F E K+G QK + T S W+ SC K S+ + ++
Sbjct: 13 KDLANVLSFGEAKLGDNGQKFNFLFHTASSNVWVPSIKCTSESCESKNHYDSSKSKTYEK 72
Query: 134 D 134
D
Sbjct: 73 D 73
>pdb|3QVC|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) Zymogen
From Plasmodium Falciparum
pdb|3QVI|A Chain A, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|B Chain B, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|C Chain C, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|D Chain D, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
Length = 451
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 24/61 (39%)
Query: 74 RDYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKA 133
+D + F E K+G QK + T S W+ SC K S+ + ++
Sbjct: 132 KDLANVLSFGEAKLGDNGQKFNFLFHTASSNVWVPSIKCTSESCESKNHYDSSKSKTYEK 191
Query: 134 D 134
D
Sbjct: 192 D 192
>pdb|2B0S|L Chain L, Crystal Structure Analysis Of Anti-Hiv-1 V3 Fab 2219 In
Complex With Mn Peptide
pdb|2B1A|L Chain L, Crystal Structure Analysis Of Anti-Hiv-1 V3 Fab 2219 In
Complex With Ug1033 Peptide
pdb|2B1H|L Chain L, Crystal Structure Analysis Of Anti-Hiv-1 V3 Fab 2219 In
Complex With Ug29 Peptide
Length = 215
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 311 VWDFNRGGGT-AFDSGTTLTFLAEPAYKPVVAALEMSLSRYQRLK 354
WD +RGG F GT LT LA+P P V S Q K
Sbjct: 91 AWDDSRGGPDWVFGGGTKLTVLAQPKAAPSVTLFPPSSEELQANK 135
>pdb|1LS5|A Chain A, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
pdb|1LS5|B Chain B, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
Length = 328
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 25/60 (41%)
Query: 75 DYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKAD 134
D M++ E ++GT Q I DTGS W+ C+ K S + ++ D
Sbjct: 10 DVANLMFYGEGQIGTNKQPFMFIFDTGSANLWVPSVNCDSIGCSTKHLYDASASKSYEKD 69
>pdb|1VB2|A Chain A, T1 Capsid Structure Of Sesbania Mosaic Virus Coat Protein
Deletion Mutant Cp-N(Delta)65-D146n-D149n
Length = 203
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 94 LRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKADLSSSFKTIPCS 145
LR + S++SW+S RY PSC + AGS F+ +++ T+P S
Sbjct: 43 LRGVAANWSKYSWLSVRYTYIPSC--PSSTAGSIHMGFQYNMA---NTVPVS 89
>pdb|3MLW|L Chain L, Crystal Structure Of Anti-Hiv-1 V3 Fab 1006-15d In Complex
With An Mn V3 Peptide
pdb|3MLW|M Chain M, Crystal Structure Of Anti-Hiv-1 V3 Fab 1006-15d In Complex
With An Mn V3 Peptide
Length = 215
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 312 WDFNRGGGT-AFDSGTTLTFLAEPAYKPVVAALEMSLSRYQRLK 354
WD +RGG F +GT +T L +P P V S Q K
Sbjct: 92 WDDSRGGPDYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANK 135
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From
Candida Tropicalis Yeast
Length = 334
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 81 YFVEIKVGTPSQKLRLIVDTGSEFSWI 107
Y +I VG+ QK +++DTGS W+
Sbjct: 14 YAADIVVGSNQQKQTVVIDTGSSDLWV 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,659,867
Number of Sequences: 62578
Number of extensions: 504049
Number of successful extensions: 1134
Number of sequences better than 100.0: 127
Number of HSP's better than 100.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 918
Number of HSP's gapped (non-prelim): 222
length of query: 445
length of database: 14,973,337
effective HSP length: 102
effective length of query: 343
effective length of database: 8,590,381
effective search space: 2946500683
effective search space used: 2946500683
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)