Query 046757
Match_columns 445
No_of_seqs 256 out of 1599
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 04:12:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046757.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046757hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 7.7E-72 1.7E-76 560.0 43.8 405 4-445 22-430 (431)
2 KOG1339 Aspartyl protease [Pos 100.0 3.5E-57 7.7E-62 451.8 38.5 344 77-444 43-397 (398)
3 PTZ00165 aspartyl protease; Pr 100.0 7.2E-57 1.6E-61 453.7 37.1 312 65-445 108-450 (482)
4 cd05478 pepsin_A Pepsin A, asp 100.0 2.5E-57 5.4E-62 441.0 31.6 303 69-440 2-317 (317)
5 cd05490 Cathepsin_D2 Cathepsin 100.0 2.1E-56 4.6E-61 436.1 32.0 302 77-440 3-325 (325)
6 cd05486 Cathespin_E Cathepsin 100.0 3.5E-56 7.5E-61 432.8 30.0 297 81-440 1-316 (316)
7 cd05472 cnd41_like Chloroplast 100.0 1.2E-55 2.7E-60 425.9 33.4 294 80-443 1-299 (299)
8 cd05477 gastricsin Gastricsins 100.0 1.1E-55 2.4E-60 429.8 33.1 299 79-441 2-318 (318)
9 cd05488 Proteinase_A_fungi Fun 100.0 2.4E-55 5.3E-60 427.4 31.1 303 68-440 1-320 (320)
10 cd06098 phytepsin Phytepsin, a 100.0 4.2E-55 9.2E-60 425.0 32.4 297 68-440 1-317 (317)
11 cd05485 Cathepsin_D_like Cathe 100.0 4.6E-55 1E-59 426.7 32.0 307 68-440 2-329 (329)
12 cd05487 renin_like Renin stimu 100.0 9.9E-55 2.1E-59 424.2 32.0 301 77-441 5-326 (326)
13 cd06096 Plasmepsin_5 Plasmepsi 100.0 7.9E-55 1.7E-59 424.7 31.0 302 79-444 2-326 (326)
14 cd05489 xylanase_inhibitor_I_l 100.0 7E-54 1.5E-58 421.1 33.7 325 87-441 2-361 (362)
15 PTZ00147 plasmepsin-1; Provisi 100.0 2.7E-53 5.8E-58 424.7 35.7 307 64-442 126-450 (453)
16 PTZ00013 plasmepsin 4 (PM4); P 100.0 1E-52 2.2E-57 419.7 35.9 307 64-442 125-449 (450)
17 cd05475 nucellin_like Nucellin 100.0 4.1E-52 8.9E-57 395.6 30.9 263 79-443 1-273 (273)
18 cd05473 beta_secretase_like Be 100.0 3E-52 6.4E-57 412.7 30.9 319 79-445 2-349 (364)
19 cd05476 pepsin_A_like_plant Ch 100.0 1.4E-50 3.1E-55 383.6 30.2 258 80-443 1-265 (265)
20 cd06097 Aspergillopepsin_like 100.0 3.4E-49 7.3E-54 377.0 27.8 264 81-440 1-278 (278)
21 PF00026 Asp: Eukaryotic aspar 100.0 9.3E-50 2E-54 388.4 21.6 297 80-441 1-317 (317)
22 cd05474 SAP_like SAPs, pepsin- 100.0 6.8E-49 1.5E-53 378.5 27.3 272 80-441 2-295 (295)
23 cd05471 pepsin_like Pepsin-lik 100.0 1E-45 2.2E-50 354.1 28.9 271 81-440 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 2.5E-31 5.5E-36 232.4 16.5 164 81-270 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 99.9 4.6E-27 1E-31 205.4 15.1 151 290-440 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.9 1.9E-22 4E-27 164.6 12.3 106 83-227 1-109 (109)
27 cd05483 retropepsin_like_bacte 98.0 3.1E-05 6.8E-10 60.8 8.2 93 80-229 2-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 97.2 0.0024 5.2E-08 52.6 9.2 101 68-228 2-102 (121)
29 PF13650 Asp_protease_2: Aspar 96.2 0.047 1E-06 41.8 9.2 89 83-228 1-89 (90)
30 cd05479 RP_DDI RP_DDI; retrope 95.8 0.033 7.2E-07 46.0 7.0 26 413-438 99-124 (124)
31 PF08284 RVP_2: Retroviral asp 94.9 0.055 1.2E-06 45.4 5.4 29 413-441 104-132 (135)
32 cd05479 RP_DDI RP_DDI; retrope 94.7 0.27 5.9E-06 40.6 9.0 30 79-110 15-44 (124)
33 TIGR02281 clan_AA_DTGA clan AA 94.7 0.59 1.3E-05 38.4 10.8 33 288-336 9-41 (121)
34 TIGR03698 clan_AA_DTGF clan AA 92.2 0.77 1.7E-05 36.8 7.4 24 413-436 84-107 (107)
35 cd05484 retropepsin_like_LTR_2 91.9 1.3 2.8E-05 34.2 8.2 29 298-339 5-33 (91)
36 cd05484 retropepsin_like_LTR_2 91.9 0.19 4.1E-06 38.9 3.5 28 81-110 1-28 (91)
37 PF12384 Peptidase_A2B: Ty3 tr 91.9 1.6 3.4E-05 37.4 9.0 48 276-336 16-64 (177)
38 COG3577 Predicted aspartyl pro 90.9 0.95 2.1E-05 40.2 7.0 91 65-210 93-183 (215)
39 PF13975 gag-asp_proteas: gag- 89.8 0.55 1.2E-05 34.6 4.1 30 79-110 7-36 (72)
40 PF11925 DUF3443: Protein of u 89.2 23 0.0005 34.6 16.3 29 82-110 25-58 (370)
41 PF13650 Asp_protease_2: Aspar 85.7 1.1 2.4E-05 33.9 3.8 28 298-338 3-30 (90)
42 PF00077 RVP: Retroviral aspar 80.9 2.2 4.8E-05 33.3 3.8 27 82-110 7-33 (100)
43 PF13975 gag-asp_proteas: gag- 80.3 2.7 5.8E-05 30.8 3.8 29 298-339 13-41 (72)
44 cd05483 retropepsin_like_bacte 79.4 3.3 7.2E-05 31.7 4.3 28 298-338 7-34 (96)
45 cd06095 RP_RTVL_H_like Retrope 75.5 4.1 8.9E-05 31.0 3.7 29 298-339 3-31 (86)
46 PF02160 Peptidase_A3: Caulifl 74.4 9.2 0.0002 34.2 6.0 52 372-440 66-117 (201)
47 cd06094 RP_Saci_like RP_Saci_l 73.7 21 0.00045 27.5 6.9 79 315-425 7-87 (89)
48 cd05482 HIV_retropepsin_like R 72.4 4.5 9.7E-05 31.0 3.2 25 84-110 2-26 (87)
49 cd06095 RP_RTVL_H_like Retrope 72.0 4.7 0.0001 30.7 3.3 25 84-110 2-26 (86)
50 PF00077 RVP: Retroviral aspar 71.5 4.6 0.0001 31.4 3.2 25 298-335 10-34 (100)
51 cd05481 retropepsin_like_LTR_1 59.2 12 0.00025 29.1 3.3 21 319-339 12-32 (93)
52 COG3577 Predicted aspartyl pro 59.0 21 0.00046 31.9 5.1 32 288-335 103-134 (215)
53 PF12384 Peptidase_A2B: Ty3 tr 58.2 13 0.00028 31.9 3.5 29 82-110 34-62 (177)
54 PF09668 Asp_protease: Asparty 49.5 22 0.00047 29.3 3.5 28 298-338 29-56 (124)
55 cd05470 pepsin_retropepsin_lik 46.8 20 0.00043 28.2 2.9 18 318-335 12-29 (109)
56 COG5550 Predicted aspartyl pro 41.4 19 0.00041 29.4 1.9 23 414-436 95-117 (125)
57 KOG0012 DNA damage inducible p 40.4 1.6E+02 0.0036 28.7 8.2 39 402-441 307-346 (380)
58 PF09668 Asp_protease: Asparty 39.7 42 0.00091 27.6 3.7 30 79-110 23-52 (124)
59 cd06098 phytepsin Phytepsin, a 30.0 69 0.0015 30.8 4.2 16 319-334 25-40 (317)
60 cd06097 Aspergillopepsin_like 29.8 50 0.0011 31.0 3.2 17 319-335 15-31 (278)
61 cd06096 Plasmepsin_5 Plasmepsi 27.1 75 0.0016 30.7 3.9 16 319-334 18-33 (326)
62 TIGR03698 clan_AA_DTGF clan AA 25.1 97 0.0021 24.6 3.5 27 83-109 2-33 (107)
63 cd05488 Proteinase_A_fungi Fun 24.4 89 0.0019 30.1 3.9 16 319-334 25-40 (320)
64 cd00303 retropepsin_like Retro 23.2 1.2E+02 0.0025 21.3 3.6 18 320-337 12-29 (92)
65 PTZ00147 plasmepsin-1; Provisi 23.2 1.1E+02 0.0025 31.2 4.5 16 319-334 154-169 (453)
66 cd05478 pepsin_A Pepsin A, asp 21.9 1.1E+02 0.0024 29.3 4.0 33 288-334 8-40 (317)
67 cd05490 Cathepsin_D2 Cathepsin 21.6 1.1E+02 0.0023 29.6 3.8 16 319-334 21-36 (325)
68 cd05474 SAP_like SAPs, pepsin- 20.5 1.1E+02 0.0023 29.0 3.5 14 319-332 17-30 (295)
69 cd05487 renin_like Renin stimu 20.3 1.2E+02 0.0026 29.2 3.9 16 319-334 23-38 (326)
70 PF13752 DUF4165: Domain of un 20.2 2.1E+02 0.0044 23.5 4.4 51 264-325 72-122 (124)
71 PF08284 RVP_2: Retroviral asp 20.1 1.4E+02 0.003 24.9 3.6 29 80-110 21-49 (135)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=7.7e-72 Score=560.03 Aligned_cols=405 Identities=27% Similarity=0.515 Sum_probs=327.6
Q ss_pred cceeEEEEEccCCCCCCC-CCCCChHHHHHHHHhhhHHHHHHhhccccccccCCCCCCCCCCceeecceecccCccccEE
Q 046757 4 VVAVRMELIHRHSPKLNN-MPMMSEVERMKELLHNDIIRQNKRRGRRLRQTNNNNNNGASGSAIEMPLQAGRDYGTGMYF 82 (445)
Q Consensus 4 ~~~~~~~l~h~~s~~~~~-~~~~~~~~~~~~~~~~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~Y~ 82 (445)
.++++++|+||+++++|. +++.++.+.++++++|+.+|.+++..+.. ....+..++. .++++|+
T Consensus 22 ~~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-----------~~~~~~~~~~----~~~~~Y~ 86 (431)
T PLN03146 22 KGGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTDA-----------SPNDPQSDLI----SNGGEYL 86 (431)
T ss_pred CCceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhccc-----------cCCccccCcc----cCCccEE
Confidence 357999999999999875 34567789999999999999877653211 1112223333 3448999
Q ss_pred EEEEeCCCCceEEEEEEcCCCeeeeccCCCCCCCCCCCCccCCCCCCCcCCCCCCcccccCCCCccchhhhhcccCCCCC
Q 046757 83 VEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKADLSSSFKTIPCSSDMCKSEFARLFSLTFC 162 (445)
Q Consensus 83 ~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~~c~~~C~~~~~~~~~~~~~f~p~~Sst~~~~~c~~~~C~~~~~~~~~~~~c 162 (445)
++|.||||+|++.|++||||+++||+|. +|.. |..+ ..+.|||++|+||+.++|+++.|+. +. ....|
T Consensus 87 v~i~iGTPpq~~~vi~DTGS~l~Wv~C~-~C~~-C~~~------~~~~fdps~SST~~~~~C~s~~C~~-~~---~~~~c 154 (431)
T PLN03146 87 MNISIGTPPVPILAIADTGSDLIWTQCK-PCDD-CYKQ------VSPLFDPKKSSTYKDVSCDSSQCQA-LG---NQASC 154 (431)
T ss_pred EEEEcCCCCceEEEEECCCCCcceEcCC-CCcc-cccC------CCCcccCCCCCCCcccCCCCccccc-CC---CCCCC
Confidence 9999999999999999999999999998 8875 8876 5689999999999999999999984 22 22346
Q ss_pred CCCCCCCeeeeEeCCCCeEeEEEEEEEEEeeeCCCCceeeeeeEeeeeeccCCCCC-CCCceEEecCCCCCchhhhhhcC
Q 046757 163 PTPTSPCAYDYRYADGSAAKGIFGKERVTIGLENGGKTRIEEVVMGCSDTIQGQIF-AEADGVLGLSYDKYSFAQKVTNG 241 (445)
Q Consensus 163 ~~~~~~~~~~~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~v~~~~fG~~~~~~~~~~-~~~~GilGLg~~~~s~~~~l~~~ 241 (445)
... +.|.|.+.|+||+.+.|.+++|+|+|++..+..+.++++.|||++...+ .| ...+||||||++.+|+++|| .
T Consensus 155 ~~~-~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g-~f~~~~~GilGLG~~~~Sl~sql--~ 230 (431)
T PLN03146 155 SDE-NTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGG-TFDEKGSGIVGLGGGPLSLISQL--G 230 (431)
T ss_pred CCC-CCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCC-CccCCCceeEecCCCCccHHHHh--h
Confidence 443 4699999999999789999999999986544446799999999998776 45 45899999999999999999 4
Q ss_pred cCCCCCceEEeccCCCCCCCCcceEEECCCC-CCC-CeeeeeeecCCCCCCeeEEEeeEEECCEEeecCCcccccCCCCc
Q 046757 242 STFARGKFAYCLVDHLSHKNVSNYLIFGEES-KRM-RMRMRYTLLGLIGPDYGVSVKGISIGGVMLNIPSQVWDFNRGGG 319 (445)
Q Consensus 242 ~~i~~~~FS~~l~~~~~~~~~~g~l~fGg~d-~~~-~~~~~pl~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~~~ 319 (445)
..++ ++|||||.+..+.....|.|+||+.. +.+ .+.|+||+.+....+|+|.|++|+||++.+.++...|...+.++
T Consensus 231 ~~~~-~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~ 309 (431)
T PLN03146 231 SSIG-GKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGN 309 (431)
T ss_pred HhhC-CcEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCc
Confidence 4566 69999997643222457999999975 333 58999998543357999999999999999888776653244568
Q ss_pred EEEccccceeeechhhHHHHHHHHHHHhhccccCCCCCCcccccccCCCCccccCeEEEEEcCCCEEEeCCCceEEEeCC
Q 046757 320 TAFDSGTTLTFLAEPAYKPVVAALEMSLSRYQRLKRDAPFEYCFNSTGFDESSVPKLVFHFADGARFEPHTKSYIIRVAH 399 (445)
Q Consensus 320 ~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~l~f~f~gg~~~~l~~~~yi~~~~~ 399 (445)
+||||||++++||+++|++|+++|.+.+...........+..||+... ...+|+|+|+| +|+++.||+++|+++..+
T Consensus 310 ~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~--~~~~P~i~~~F-~Ga~~~l~~~~~~~~~~~ 386 (431)
T PLN03146 310 IIIDSGTTLTLLPSDFYSELESAVEEAIGGERVSDPQGLLSLCYSSTS--DIKLPIITAHF-TGADVKLQPLNTFVKVSE 386 (431)
T ss_pred EEEeCCccceecCHHHHHHHHHHHHHHhccccCCCCCCCCCccccCCC--CCCCCeEEEEE-CCCeeecCcceeEEEcCC
Confidence 999999999999999999999999988864332222235679998542 25789999999 689999999999998766
Q ss_pred ceEEEEEEeCCCCCceeechhhhceeEEEEeCCCCEEEEeeCCCCC
Q 046757 400 GIRCLGFVSATWPGASAIGNIMQQNYFWEFDLLKDRLGFAPSTCAT 445 (445)
Q Consensus 400 ~~~C~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfa~~~C~~ 445 (445)
+..|+++.... +.+|||+.|||++|++||++++|||||+++|++
T Consensus 387 ~~~Cl~~~~~~--~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~~ 430 (431)
T PLN03146 387 DLVCFAMIPTS--SIAIFGNLAQMNFLVGYDLESKTVSFKPTDCTK 430 (431)
T ss_pred CcEEEEEecCC--CceEECeeeEeeEEEEEECCCCEEeeecCCcCc
Confidence 77899887653 469999999999999999999999999999975
No 2
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-57 Score=451.76 Aligned_cols=344 Identities=32% Similarity=0.609 Sum_probs=280.3
Q ss_pred ccccEEEEEEeCCCCceEEEEEEcCCCeeeeccCCCCCCCCCCCCccCCCCCCCcCCCCCCcccccCCCCccchhhhhcc
Q 046757 77 GTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKADLSSSFKTIPCSSDMCKSEFARL 156 (445)
Q Consensus 77 ~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~~c~~~C~~~~~~~~~~~~~f~p~~Sst~~~~~c~~~~C~~~~~~~ 156 (445)
..++|+++|.||||||.|.|++||||+++||+|. +|...|..+ ..+.|||++|+||+.+.|.++.|....
T Consensus 43 ~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~-~c~~~C~~~------~~~~f~p~~SSt~~~~~c~~~~c~~~~--- 112 (398)
T KOG1339|consen 43 SSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCA-PCSSACYSQ------HNPIFDPSASSTYKSVGCSSPRCKSLP--- 112 (398)
T ss_pred cccccEEEEecCCCCeeeEEEEeCCCCceeeccc-ccccccccc------CCCccCccccccccccCCCCccccccc---
Confidence 3479999999999999999999999999999997 887348763 235599999999999999999999522
Q ss_pred cCCCCCCCCCCCCeeeeEeCCCCeEeEEEEEEEEEeeeCCCCceeeeeeEeeeeeccCCCCC---CCCceEEecCCCCCc
Q 046757 157 FSLTFCPTPTSPCAYDYRYADGSAAKGIFGKERVTIGLENGGKTRIEEVVMGCSDTIQGQIF---AEADGVLGLSYDKYS 233 (445)
Q Consensus 157 ~~~~~c~~~~~~~~~~~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~v~~~~fG~~~~~~~~~~---~~~~GilGLg~~~~s 233 (445)
.|...++.|.|.+.|+||+.+.|.+++|+|+|++.+ .+.++++.|||+....+. + ...+||||||++.++
T Consensus 113 ----~~~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~--~~~~~~~~FGc~~~~~g~-~~~~~~~dGIlGLg~~~~S 185 (398)
T KOG1339|consen 113 ----QSCSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTT--SLPVPNQTFGCGTNNPGS-FGLFAAFDGILGLGRGSLS 185 (398)
T ss_pred ----cCcccCCcCceEEEeCCCCceeEEEEEEEEEEcccc--ccccccEEEEeeecCccc-cccccccceEeecCCCCcc
Confidence 223345579999999997789999999999999422 267788999999999764 3 358999999999999
Q ss_pred hhhhhhcCcCCCCCceEEeccCCCCCCCCcceEEECCCC---CCCCeeeeeeecCCCCCCeeEEEeeEEECCEEeecCCc
Q 046757 234 FAQKVTNGSTFARGKFAYCLVDHLSHKNVSNYLIFGEES---KRMRMRMRYTLLGLIGPDYGVSVKGISIGGVMLNIPSQ 310 (445)
Q Consensus 234 ~~~~l~~~~~i~~~~FS~~l~~~~~~~~~~g~l~fGg~d---~~~~~~~~pl~~~~~~~~y~v~l~~i~vg~~~~~~~~~ 310 (445)
++.|+....... ++||+||.+........|.|+||+.| +.+.+.|+||+.+.. .+|.|.|.+|+|+++. .++..
T Consensus 186 ~~~q~~~~~~~~-~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~-~~y~v~l~~I~vgg~~-~~~~~ 262 (398)
T KOG1339|consen 186 VPSQLPSFYNAI-NVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPS-TYYQVNLDGISVGGKR-PIGSS 262 (398)
T ss_pred ceeecccccCCc-eeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCC-ccEEEEEeEEEECCcc-CCCcc
Confidence 999996655554 58999998764333358999999998 557899999996432 4999999999999987 66666
Q ss_pred ccccCCCCcEEEccccceeeechhhHHHHHHHHHHHhhccccCCCCCCcccccccCCCCccccCeEEEEEcCCCEEEeCC
Q 046757 311 VWDFNRGGGTAFDSGTTLTFLAEPAYKPVVAALEMSLSRYQRLKRDAPFEYCFNSTGFDESSVPKLVFHFADGARFEPHT 390 (445)
Q Consensus 311 ~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~l~f~f~gg~~~~l~~ 390 (445)
.+. ....++|+||||++++||.++|++|.++|.+.+. ...... .....||...... ..+|.|+|+|.+|+.|.|++
T Consensus 263 ~~~-~~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~-~~~~~~-~~~~~C~~~~~~~-~~~P~i~~~f~~g~~~~l~~ 338 (398)
T KOG1339|consen 263 LFC-TDGGGAIIDSGTSLTYLPTSAYNALREAIGAEVS-VVGTDG-EYFVPCFSISTSG-VKLPDITFHFGGGAVFSLPP 338 (398)
T ss_pred eEe-cCCCCEEEECCcceeeccHHHHHHHHHHHHhhee-ccccCC-ceeeecccCCCCc-ccCCcEEEEECCCcEEEeCc
Confidence 664 2268899999999999999999999999976541 111111 3667999865433 45999999995599999999
Q ss_pred CceEEEeCCceE-EEEEEeCCCC-CceeechhhhceeEEEEeCC-CCEEEEee--CCCC
Q 046757 391 KSYIIRVAHGIR-CLGFVSATWP-GASAIGNIMQQNYFWEFDLL-KDRLGFAP--STCA 444 (445)
Q Consensus 391 ~~yi~~~~~~~~-C~~~~~~~~~-~~~ilG~~fl~~~y~vfD~~-~~~igfa~--~~C~ 444 (445)
++|+++...+.. |+++...... ..||||+.|||+++++||+. ++|||||+ ..|.
T Consensus 339 ~~y~~~~~~~~~~Cl~~~~~~~~~~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 339 KNYLVEVSDGGGVCLAFFNGMDSGPLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred cceEEEECCCCCceeeEEecCCCCceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 999998765544 9966555423 48999999999999999999 99999999 8886
No 3
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=7.2e-57 Score=453.74 Aligned_cols=312 Identities=22% Similarity=0.415 Sum_probs=258.0
Q ss_pred ceeecceecccCccccEEEEEEeCCCCceEEEEEEcCCCeeeeccCCCCCC-CCCCCCccCCCCCCCcCCCCCCcccccC
Q 046757 65 AIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGP-SCTKKGTIAGSRRRVFKADLSSSFKTIP 143 (445)
Q Consensus 65 ~~~~pl~~~~~~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~~c~~-~C~~~~~~~~~~~~~f~p~~Sst~~~~~ 143 (445)
....||.+..+ .+|+++|+||||||+|.|++||||+++||+|. .|.. .|..+ +.|||++|+||+.+.
T Consensus 108 ~~~~~l~n~~d---~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~-~C~~~~C~~~--------~~yd~s~SSTy~~~~ 175 (482)
T PTZ00165 108 YLQQDLLNFHN---SQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSK-ECKSGGCAPH--------RKFDPKKSSTYTKLK 175 (482)
T ss_pred ccceecccccC---CeEEEEEEeCCCCceEEEEEeCCCCCEEEEch-hcCccccccc--------CCCCccccCCcEecC
Confidence 35678887654 99999999999999999999999999999998 6653 57766 899999999998843
Q ss_pred CCCccchhhhhcccCCCCCCCCCCCCeeeeEeCCCCeEeEEEEEEEEEeeeCCCCceeeeeeEeeeeeccCCCCC--CCC
Q 046757 144 CSSDMCKSEFARLFSLTFCPTPTSPCAYDYRYADGSAAKGIFGKERVTIGLENGGKTRIEEVVMGCSDTIQGQIF--AEA 221 (445)
Q Consensus 144 c~~~~C~~~~~~~~~~~~c~~~~~~~~~~~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~v~~~~fG~~~~~~~~~~--~~~ 221 (445)
+.. ....+.+.|++|+ +.|.+++|+|+|+ ++.++++.||+++...+..| ..+
T Consensus 176 ~~~--------------------~~~~~~i~YGsGs-~~G~l~~DtV~ig-----~l~i~~q~FG~a~~~s~~~f~~~~~ 229 (482)
T PTZ00165 176 LGD--------------------ESAETYIQYGTGE-CVLALGKDTVKIG-----GLKVKHQSIGLAIEESLHPFADLPF 229 (482)
T ss_pred CCC--------------------ccceEEEEeCCCc-EEEEEEEEEEEEC-----CEEEccEEEEEEEeccccccccccc
Confidence 110 0125679999998 8899999999999 78999999999998765445 568
Q ss_pred ceEEecCCCCC---------chhhhhhcCcCCCCCceEEeccCCCCCCCCcceEEECCCC---C--CCCeeeeeeecCCC
Q 046757 222 DGVLGLSYDKY---------SFAQKVTNGSTFARGKFAYCLVDHLSHKNVSNYLIFGEES---K--RMRMRMRYTLLGLI 287 (445)
Q Consensus 222 ~GilGLg~~~~---------s~~~~l~~~~~i~~~~FS~~l~~~~~~~~~~g~l~fGg~d---~--~~~~~~~pl~~~~~ 287 (445)
|||||||++.+ +++.+|+++++|++++||+||.+. ...+|.|+|||+| + .+++.|+|+. .
T Consensus 230 DGILGLg~~~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~---~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~---~ 303 (482)
T PTZ00165 230 DGLVGLGFPDKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKD---LNQPGSISFGSADPKYTLEGHKIWWFPVI---S 303 (482)
T ss_pred cceeecCCCcccccccCCCCCHHHHHHHcCCcccceEEEEeccC---CCCCCEEEeCCcCHHHcCCCCceEEEEcc---c
Confidence 99999999764 467889999999999999999754 2347999999998 3 4689999998 4
Q ss_pred CCCeeEEEeeEEECCEEeecCCcccccCCCCcEEEccccceeeechhhHHHHHHHHHHHhhccccCCCCCCcccccccCC
Q 046757 288 GPDYGVSVKGISIGGVMLNIPSQVWDFNRGGGTAFDSGTTLTFLAEPAYKPVVAALEMSLSRYQRLKRDAPFEYCFNSTG 367 (445)
Q Consensus 288 ~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~ 367 (445)
..+|.|.+++|+|+++.+... .....+|+||||+++++|++++++|.+++. ....|..
T Consensus 304 ~~yW~i~l~~i~vgg~~~~~~------~~~~~aIiDTGTSli~lP~~~~~~i~~~i~-------------~~~~C~~--- 361 (482)
T PTZ00165 304 TDYWEIEVVDILIDGKSLGFC------DRKCKAAIDTGSSLITGPSSVINPLLEKIP-------------LEEDCSN--- 361 (482)
T ss_pred cceEEEEeCeEEECCEEeeec------CCceEEEEcCCCccEeCCHHHHHHHHHHcC-------------Ccccccc---
Confidence 789999999999999877542 235679999999999999999888887762 1235654
Q ss_pred CCccccCeEEEEEcCCC-----EEEeCCCceEEEe----CCceEEE-EEEeCCC----CCceeechhhhceeEEEEeCCC
Q 046757 368 FDESSVPKLVFHFADGA-----RFEPHTKSYIIRV----AHGIRCL-GFVSATW----PGASAIGNIMQQNYFWEFDLLK 433 (445)
Q Consensus 368 ~~~~~~P~l~f~f~gg~-----~~~l~~~~yi~~~----~~~~~C~-~~~~~~~----~~~~ilG~~fl~~~y~vfD~~~ 433 (445)
...+|+|+|+| +|. ++.|++++|+++. ..+..|+ +|...+. ++.||||++|||++|+|||+++
T Consensus 362 --~~~lP~itf~f-~g~~g~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n 438 (482)
T PTZ00165 362 --KDSLPRISFVL-EDVNGRKIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDH 438 (482)
T ss_pred --cccCCceEEEE-CCCCCceEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCC
Confidence 46789999999 543 8999999999974 2345897 8987542 2469999999999999999999
Q ss_pred CEEEEeeCCCCC
Q 046757 434 DRLGFAPSTCAT 445 (445)
Q Consensus 434 ~~igfa~~~C~~ 445 (445)
+|||||+++|..
T Consensus 439 ~rIGfA~a~~~~ 450 (482)
T PTZ00165 439 MMVGLVPAKHDQ 450 (482)
T ss_pred CEEEEEeeccCC
Confidence 999999999963
No 4
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=2.5e-57 Score=441.02 Aligned_cols=303 Identities=24% Similarity=0.427 Sum_probs=255.1
Q ss_pred cceecccCccccEEEEEEeCCCCceEEEEEEcCCCeeeeccCCCCCC-CCCCCCccCCCCCCCcCCCCCCcccccCCCCc
Q 046757 69 PLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGP-SCTKKGTIAGSRRRVFKADLSSSFKTIPCSSD 147 (445)
Q Consensus 69 pl~~~~~~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~~c~~-~C~~~~~~~~~~~~~f~p~~Sst~~~~~c~~~ 147 (445)
||++..+ ..|+++|.||||+|++.|+|||||+++||+|. .|.. .|..+ +.|||++|+|++...
T Consensus 2 ~l~n~~~---~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~-~C~~~~c~~~--------~~f~~~~Sst~~~~~---- 65 (317)
T cd05478 2 PLTNYLD---MEYYGTISIGTPPQDFTVIFDTGSSNLWVPSV-YCSSQACSNH--------NRFNPRQSSTYQSTG---- 65 (317)
T ss_pred ccccccC---CEEEEEEEeCCCCcEEEEEEeCCCccEEEecC-CCCccccccc--------CcCCCCCCcceeeCC----
Confidence 6776644 89999999999999999999999999999998 6653 56655 899999999998754
Q ss_pred cchhhhhcccCCCCCCCCCCCCeeeeEeCCCCeEeEEEEEEEEEeeeCCCCceeeeeeEeeeeeccCCCCC--CCCceEE
Q 046757 148 MCKSEFARLFSLTFCPTPTSPCAYDYRYADGSAAKGIFGKERVTIGLENGGKTRIEEVVMGCSDTIQGQIF--AEADGVL 225 (445)
Q Consensus 148 ~C~~~~~~~~~~~~c~~~~~~~~~~~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~v~~~~fG~~~~~~~~~~--~~~~Gil 225 (445)
+.|.+.|++|+ +.|.+++|+|+|+ ++.++++.|||++...+..+ ...+|||
T Consensus 66 ---------------------~~~~~~yg~gs-~~G~~~~D~v~ig-----~~~i~~~~fg~~~~~~~~~~~~~~~dGil 118 (317)
T cd05478 66 ---------------------QPLSIQYGTGS-MTGILGYDTVQVG-----GISDTNQIFGLSETEPGSFFYYAPFDGIL 118 (317)
T ss_pred ---------------------cEEEEEECCce-EEEEEeeeEEEEC-----CEEECCEEEEEEEecCcccccccccccee
Confidence 58999999998 8999999999999 78899999999987765322 3589999
Q ss_pred ecCCCCC------chhhhhhcCcCCCCCceEEeccCCCCCCCCcceEEECCCC---CCCCeeeeeeecCCCCCCeeEEEe
Q 046757 226 GLSYDKY------SFAQKVTNGSTFARGKFAYCLVDHLSHKNVSNYLIFGEES---KRMRMRMRYTLLGLIGPDYGVSVK 296 (445)
Q Consensus 226 GLg~~~~------s~~~~l~~~~~i~~~~FS~~l~~~~~~~~~~g~l~fGg~d---~~~~~~~~pl~~~~~~~~y~v~l~ 296 (445)
|||++.+ +++.+|++++.|++++||+||.+. ....|.|+|||+| +.++++|+|+. ...+|.|.|+
T Consensus 119 GLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~---~~~~g~l~~Gg~d~~~~~g~l~~~p~~---~~~~w~v~l~ 192 (317)
T cd05478 119 GLAYPSIASSGATPVFDNMMSQGLVSQDLFSVYLSSN---GQQGSVVTFGGIDPSYYTGSLNWVPVT---AETYWQITVD 192 (317)
T ss_pred eeccchhcccCCCCHHHHHHhCCCCCCCEEEEEeCCC---CCCCeEEEEcccCHHHccCceEEEECC---CCcEEEEEee
Confidence 9998754 488899999999999999999864 2346999999998 67999999998 4689999999
Q ss_pred eEEECCEEeecCCcccccCCCCcEEEccccceeeechhhHHHHHHHHHHHhhccccCCCCCCcccccccCCCCccccCeE
Q 046757 297 GISIGGVMLNIPSQVWDFNRGGGTAFDSGTTLTFLAEPAYKPVVAALEMSLSRYQRLKRDAPFEYCFNSTGFDESSVPKL 376 (445)
Q Consensus 297 ~i~vg~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~l 376 (445)
+|+|+++.+.. ..+..+||||||++++||+++|++|.+++.... .. ..+|.++|.....+|.|
T Consensus 193 ~v~v~g~~~~~-------~~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~----~~------~~~~~~~C~~~~~~P~~ 255 (317)
T cd05478 193 SVTINGQVVAC-------SGGCQAIVDTGTSLLVGPSSDIANIQSDIGASQ----NQ------NGEMVVNCSSISSMPDV 255 (317)
T ss_pred EEEECCEEEcc-------CCCCEEEECCCchhhhCCHHHHHHHHHHhCCcc----cc------CCcEEeCCcCcccCCcE
Confidence 99999998753 235679999999999999999999888773221 11 12344455445678999
Q ss_pred EEEEcCCCEEEeCCCceEEEeCCceEEE-EEEeCCCCCceeechhhhceeEEEEeCCCCEEEEee
Q 046757 377 VFHFADGARFEPHTKSYIIRVAHGIRCL-GFVSATWPGASAIGNIMQQNYFWEFDLLKDRLGFAP 440 (445)
Q Consensus 377 ~f~f~gg~~~~l~~~~yi~~~~~~~~C~-~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfa~ 440 (445)
+|+| +|+.++||+++|+.+. ...|+ +|+..+..+.||||++|||++|+|||++++|||||+
T Consensus 256 ~f~f-~g~~~~i~~~~y~~~~--~~~C~~~~~~~~~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 256 VFTI-NGVQYPLPPSAYILQD--QGSCTSGFQSMGLGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred EEEE-CCEEEEECHHHheecC--CCEEeEEEEeCCCCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 9999 8999999999999875 45798 788765446799999999999999999999999996
No 5
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=2.1e-56 Score=436.14 Aligned_cols=302 Identities=22% Similarity=0.402 Sum_probs=248.1
Q ss_pred ccccEEEEEEeCCCCceEEEEEEcCCCeeeeccCCCCCC---CCCCCCccCCCCCCCcCCCCCCcccccCCCCccchhhh
Q 046757 77 GTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGP---SCTKKGTIAGSRRRVFKADLSSSFKTIPCSSDMCKSEF 153 (445)
Q Consensus 77 ~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~~c~~---~C~~~~~~~~~~~~~f~p~~Sst~~~~~c~~~~C~~~~ 153 (445)
.+.+|+++|.||||+|++.|+|||||+++||+|. .|.. .|..+ +.|||++|+|++...
T Consensus 3 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~-~C~~~~~~C~~~--------~~y~~~~SsT~~~~~---------- 63 (325)
T cd05490 3 MDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSV-HCSLLDIACWLH--------HKYNSSKSSTYVKNG---------- 63 (325)
T ss_pred cCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcC-CCCCCCccccCc--------CcCCcccCcceeeCC----------
Confidence 3589999999999999999999999999999998 5652 46655 899999999997632
Q ss_pred hcccCCCCCCCCCCCCeeeeEeCCCCeEeEEEEEEEEEeeeCCCCceeeeeeEeeeeeccCCCCC--CCCceEEecCCCC
Q 046757 154 ARLFSLTFCPTPTSPCAYDYRYADGSAAKGIFGKERVTIGLENGGKTRIEEVVMGCSDTIQGQIF--AEADGVLGLSYDK 231 (445)
Q Consensus 154 ~~~~~~~~c~~~~~~~~~~~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~v~~~~fG~~~~~~~~~~--~~~~GilGLg~~~ 231 (445)
|.|.+.|++|+ +.|.+++|+|+|+ +..++++.|||++...+..| ...+||||||++.
T Consensus 64 ---------------~~~~i~Yg~G~-~~G~~~~D~v~~g-----~~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~ 122 (325)
T cd05490 64 ---------------TEFAIQYGSGS-LSGYLSQDTVSIG-----GLQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPR 122 (325)
T ss_pred ---------------cEEEEEECCcE-EEEEEeeeEEEEC-----CEEEcCEEEEEEeeccCCcccceeeeEEEecCCcc
Confidence 68999999998 8999999999999 78899999999988765444 4679999999976
Q ss_pred Cc------hhhhhhcCcCCCCCceEEeccCCCCCCCCcceEEECCCC---CCCCeeeeeeecCCCCCCeeEEEeeEEECC
Q 046757 232 YS------FAQKVTNGSTFARGKFAYCLVDHLSHKNVSNYLIFGEES---KRMRMRMRYTLLGLIGPDYGVSVKGISIGG 302 (445)
Q Consensus 232 ~s------~~~~l~~~~~i~~~~FS~~l~~~~~~~~~~g~l~fGg~d---~~~~~~~~pl~~~~~~~~y~v~l~~i~vg~ 302 (445)
.+ ++++|++++.|.+++||+||.+... ....|.|+|||+| +.+++.|+|+. ...+|.|+|++|+||+
T Consensus 123 ~s~~~~~~~~~~l~~~g~i~~~~FS~~L~~~~~-~~~~G~l~~Gg~d~~~~~g~l~~~~~~---~~~~w~v~l~~i~vg~ 198 (325)
T cd05490 123 ISVDGVTPVFDNIMAQKLVEQNVFSFYLNRDPD-AQPGGELMLGGTDPKYYTGDLHYVNVT---RKAYWQIHMDQVDVGS 198 (325)
T ss_pred ccccCCCCHHHHHHhcCCCCCCEEEEEEeCCCC-CCCCCEEEECccCHHHcCCceEEEEcC---cceEEEEEeeEEEECC
Confidence 54 5678999999999999999975421 2247999999998 67899999997 3679999999999998
Q ss_pred EEeecCCcccccCCCCcEEEccccceeeechhhHHHHHHHHHHHhhccccCCCCCCcccccccCCCCccccCeEEEEEcC
Q 046757 303 VMLNIPSQVWDFNRGGGTAFDSGTTLTFLAEPAYKPVVAALEMSLSRYQRLKRDAPFEYCFNSTGFDESSVPKLVFHFAD 382 (445)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~l~f~f~g 382 (445)
..... .....+||||||+++++|.+++++|.+++.+ .+.... +|.++|.....+|+|+|+| +
T Consensus 199 ~~~~~-------~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~----~~~~~~------~~~~~C~~~~~~P~i~f~f-g 260 (325)
T cd05490 199 GLTLC-------KGGCEAIVDTGTSLITGPVEEVRALQKAIGA----VPLIQG------EYMIDCEKIPTLPVISFSL-G 260 (325)
T ss_pred eeeec-------CCCCEEEECCCCccccCCHHHHHHHHHHhCC----ccccCC------CEEecccccccCCCEEEEE-C
Confidence 64321 2356799999999999999998888887732 221111 2444454456789999999 8
Q ss_pred CCEEEeCCCceEEEeCC--ceEEE-EEEeCC----CCCceeechhhhceeEEEEeCCCCEEEEee
Q 046757 383 GARFEPHTKSYIIRVAH--GIRCL-GFVSAT----WPGASAIGNIMQQNYFWEFDLLKDRLGFAP 440 (445)
Q Consensus 383 g~~~~l~~~~yi~~~~~--~~~C~-~~~~~~----~~~~~ilG~~fl~~~y~vfD~~~~~igfa~ 440 (445)
|+.++|++++|+++... ...|+ +|+..+ ....||||+.|||++|+|||++++|||||+
T Consensus 261 g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 261 GKVYPLTGEDYILKVSQRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred CEEEEEChHHeEEeccCCCCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 99999999999997532 35798 787643 235799999999999999999999999996
No 6
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=3.5e-56 Score=432.79 Aligned_cols=297 Identities=24% Similarity=0.409 Sum_probs=246.8
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCeeeeccCCCCCC-CCCCCCccCCCCCCCcCCCCCCcccccCCCCccchhhhhcccCC
Q 046757 81 YFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGP-SCTKKGTIAGSRRRVFKADLSSSFKTIPCSSDMCKSEFARLFSL 159 (445)
Q Consensus 81 Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~~c~~-~C~~~~~~~~~~~~~f~p~~Sst~~~~~c~~~~C~~~~~~~~~~ 159 (445)
|+++|.||||+|+++|+|||||+++||+|. .|.. .|..+ +.|||++|+|++...
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~-~C~~~~C~~~--------~~y~~~~SsT~~~~~---------------- 55 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSI-YCTSQACTKH--------NRFQPSESSTYVSNG---------------- 55 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecC-CCCCcccCcc--------ceECCCCCcccccCC----------------
Confidence 889999999999999999999999999998 5653 57666 899999999998754
Q ss_pred CCCCCCCCCCeeeeEeCCCCeEeEEEEEEEEEeeeCCCCceeeeeeEeeeeeccCCCCC--CCCceEEecCCCCCc----
Q 046757 160 TFCPTPTSPCAYDYRYADGSAAKGIFGKERVTIGLENGGKTRIEEVVMGCSDTIQGQIF--AEADGVLGLSYDKYS---- 233 (445)
Q Consensus 160 ~~c~~~~~~~~~~~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~v~~~~fG~~~~~~~~~~--~~~~GilGLg~~~~s---- 233 (445)
|.|.+.|++|+ +.|.+++|+|+|+ ++.++++.|||+....+..| ...+||||||++.++
T Consensus 56 ---------~~~~i~Yg~g~-~~G~~~~D~v~ig-----~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~ 120 (316)
T cd05486 56 ---------EAFSIQYGTGS-LTGIIGIDQVTVE-----GITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGV 120 (316)
T ss_pred ---------cEEEEEeCCcE-EEEEeeecEEEEC-----CEEEcCEEEEEeeccCcccccccccceEeccCchhhccCCC
Confidence 68999999998 8999999999998 78999999999887665444 468999999997664
Q ss_pred --hhhhhhcCcCCCCCceEEeccCCCCCCCCcceEEECCCC---CCCCeeeeeeecCCCCCCeeEEEeeEEECCEEeecC
Q 046757 234 --FAQKVTNGSTFARGKFAYCLVDHLSHKNVSNYLIFGEES---KRMRMRMRYTLLGLIGPDYGVSVKGISIGGVMLNIP 308 (445)
Q Consensus 234 --~~~~l~~~~~i~~~~FS~~l~~~~~~~~~~g~l~fGg~d---~~~~~~~~pl~~~~~~~~y~v~l~~i~vg~~~~~~~ 308 (445)
++++|++++.|+.++||+||.+... ....|.|+|||+| +.|++.|+|+. ...+|.|.+++|+|+++.+..
T Consensus 121 ~p~~~~l~~qg~i~~~~FS~~L~~~~~-~~~~g~l~fGg~d~~~~~g~l~~~pi~---~~~~w~v~l~~i~v~g~~~~~- 195 (316)
T cd05486 121 TPVFDNMMAQNLVELPMFSVYMSRNPN-SADGGELVFGGFDTSRFSGQLNWVPVT---VQGYWQIQLDNIQVGGTVIFC- 195 (316)
T ss_pred CCHHHHHHhcCCCCCCEEEEEEccCCC-CCCCcEEEEcccCHHHcccceEEEECC---CceEEEEEeeEEEEecceEec-
Confidence 5788999999998999999986421 2347999999998 67899999998 468999999999999987643
Q ss_pred CcccccCCCCcEEEccccceeeechhhHHHHHHHHHHHhhccccCCCCCCcccccccCCCCccccCeEEEEEcCCCEEEe
Q 046757 309 SQVWDFNRGGGTAFDSGTTLTFLAEPAYKPVVAALEMSLSRYQRLKRDAPFEYCFNSTGFDESSVPKLVFHFADGARFEP 388 (445)
Q Consensus 309 ~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~l~f~f~gg~~~~l 388 (445)
.....+||||||+++++|++++++|.+++.. ... ..+|.++|.....+|+|+|+| +|+.++|
T Consensus 196 ------~~~~~aiiDTGTs~~~lP~~~~~~l~~~~~~-----~~~------~~~~~~~C~~~~~~p~i~f~f-~g~~~~l 257 (316)
T cd05486 196 ------SDGCQAIVDTGTSLITGPSGDIKQLQNYIGA-----TAT------DGEYGVDCSTLSLMPSVTFTI-NGIPYSL 257 (316)
T ss_pred ------CCCCEEEECCCcchhhcCHHHHHHHHHHhCC-----ccc------CCcEEEeccccccCCCEEEEE-CCEEEEe
Confidence 2346799999999999999998888776631 111 122444554456799999999 8999999
Q ss_pred CCCceEEEe--CCceEEE-EEEeCC----CCCceeechhhhceeEEEEeCCCCEEEEee
Q 046757 389 HTKSYIIRV--AHGIRCL-GFVSAT----WPGASAIGNIMQQNYFWEFDLLKDRLGFAP 440 (445)
Q Consensus 389 ~~~~yi~~~--~~~~~C~-~~~~~~----~~~~~ilG~~fl~~~y~vfD~~~~~igfa~ 440 (445)
++++|++.. .....|+ +|+..+ ..+.||||+.|||++|+|||++++|||||+
T Consensus 258 ~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 258 SPQAYTLEDQSDGGGYCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred CHHHeEEecccCCCCEEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 999999975 2345798 787643 134699999999999999999999999996
No 7
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=1.2e-55 Score=425.89 Aligned_cols=294 Identities=33% Similarity=0.646 Sum_probs=243.8
Q ss_pred cEEEEEEeCCCCceEEEEEEcCCCeeeeccCCCCCCCCCCCCccCCCCCCCcCCCCCCcccccCCCCccchhhhhcccCC
Q 046757 80 MYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKADLSSSFKTIPCSSDMCKSEFARLFSL 159 (445)
Q Consensus 80 ~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~~c~~~C~~~~~~~~~~~~~f~p~~Sst~~~~~c~~~~C~~~~~~~~~~ 159 (445)
+|+++|.||||||++.|+|||||+++||+|. .|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~-~c---------------------------------------------- 33 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQ-PC---------------------------------------------- 33 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCC-CC----------------------------------------------
Confidence 5999999999999999999999999999876 22
Q ss_pred CCCCCCCCCCeeeeEeCCCCeEeEEEEEEEEEeeeCCCCce-eeeeeEeeeeeccCCCCCCCCceEEecCCCCCchhhhh
Q 046757 160 TFCPTPTSPCAYDYRYADGSAAKGIFGKERVTIGLENGGKT-RIEEVVMGCSDTIQGQIFAEADGVLGLSYDKYSFAQKV 238 (445)
Q Consensus 160 ~~c~~~~~~~~~~~~Y~~gs~~~G~~~~D~v~i~~~~~~~~-~v~~~~fG~~~~~~~~~~~~~~GilGLg~~~~s~~~~l 238 (445)
|.|.+.|++|+.+.|.+++|+|+|+ +. .++++.|||+....+ .+...+||||||+...+++.|+
T Consensus 34 ---------~~~~i~Yg~Gs~~~G~~~~D~v~ig-----~~~~~~~~~Fg~~~~~~~-~~~~~~GilGLg~~~~s~~~ql 98 (299)
T cd05472 34 ---------CLYQVSYGDGSYTTGDLATDTLTLG-----SSDVVPGFAFGCGHDNEG-LFGGAAGLLGLGRGKLSLPSQT 98 (299)
T ss_pred ---------CeeeeEeCCCceEEEEEEEEEEEeC-----CCCccCCEEEECCccCCC-ccCCCCEEEECCCCcchHHHHh
Confidence 2688999999978999999999998 45 789999999998765 4457899999999999999998
Q ss_pred hcCcCCCCCceEEeccCCCCCCCCcceEEECCCCC-CCCeeeeeeecCC-CCCCeeEEEeeEEECCEEeecCCcccccCC
Q 046757 239 TNGSTFARGKFAYCLVDHLSHKNVSNYLIFGEESK-RMRMRMRYTLLGL-IGPDYGVSVKGISIGGVMLNIPSQVWDFNR 316 (445)
Q Consensus 239 ~~~~~i~~~~FS~~l~~~~~~~~~~g~l~fGg~d~-~~~~~~~pl~~~~-~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~ 316 (445)
..+ .+ ++||+||.+.. ....|.|+||++|. .+++.|+|++.++ ...+|.|+|++|+|+++.+.++... ..
T Consensus 99 ~~~--~~-~~FS~~L~~~~--~~~~G~l~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~---~~ 170 (299)
T cd05472 99 ASS--YG-GVFSYCLPDRS--SSSSGYLSFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPAS---FG 170 (299)
T ss_pred hHh--hc-CceEEEccCCC--CCCCceEEeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccc---cC
Confidence 433 44 89999997642 24579999999984 6899999998754 3469999999999999987654321 24
Q ss_pred CCcEEEccccceeeechhhHHHHHHHHHHHhhccccCCCCCCcccccccCCCCccccCeEEEEEcCCCEEEeCCCceEEE
Q 046757 317 GGGTAFDSGTTLTFLAEPAYKPVVAALEMSLSRYQRLKRDAPFEYCFNSTGFDESSVPKLVFHFADGARFEPHTKSYIIR 396 (445)
Q Consensus 317 ~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~l~f~f~gg~~~~l~~~~yi~~ 396 (445)
...+||||||++++||+++|++|.+++.+.+...........+..||..++.....+|+|+|+|++|+.++||+++|+++
T Consensus 171 ~~~~ivDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~ 250 (299)
T cd05472 171 AGGVIIDSGTVITRLPPSAYAALRDAFRAAMAAYPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYP 250 (299)
T ss_pred CCCeEEeCCCcceecCHHHHHHHHHHHHHHhccCCCCCCCCCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEEE
Confidence 56799999999999999999999999987764333222222344699887765678999999996589999999999994
Q ss_pred e-CCceEEEEEEeCC-CCCceeechhhhceeEEEEeCCCCEEEEeeCCC
Q 046757 397 V-AHGIRCLGFVSAT-WPGASAIGNIMQQNYFWEFDLLKDRLGFAPSTC 443 (445)
Q Consensus 397 ~-~~~~~C~~~~~~~-~~~~~ilG~~fl~~~y~vfD~~~~~igfa~~~C 443 (445)
. ..+..|+++...+ ..+.+|||+.|||++|+|||++++|||||+++|
T Consensus 251 ~~~~~~~C~~~~~~~~~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 251 VDDSSQVCLAFAGTSDDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred ecCCCCEEEEEeCCCCCCCCEEEchHHccceEEEEECCCCEEeEecCCC
Confidence 3 4456899887664 235799999999999999999999999999999
No 8
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=1.1e-55 Score=429.80 Aligned_cols=299 Identities=24% Similarity=0.418 Sum_probs=250.6
Q ss_pred ccEEEEEEeCCCCceEEEEEEcCCCeeeeccCCCCCC-CCCCCCccCCCCCCCcCCCCCCcccccCCCCccchhhhhccc
Q 046757 79 GMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGP-SCTKKGTIAGSRRRVFKADLSSSFKTIPCSSDMCKSEFARLF 157 (445)
Q Consensus 79 ~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~~c~~-~C~~~~~~~~~~~~~f~p~~Sst~~~~~c~~~~C~~~~~~~~ 157 (445)
..|+++|.||||+|++.|+|||||+++||+|. .|.. .|..+ +.|||++|+|++...
T Consensus 2 ~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~-~C~~~~C~~~--------~~f~~~~SsT~~~~~-------------- 58 (318)
T cd05477 2 MSYYGEISIGTPPQNFLVLFDTGSSNLWVPSV-LCQSQACTNH--------TKFNPSQSSTYSTNG-------------- 58 (318)
T ss_pred cEEEEEEEECCCCcEEEEEEeCCCccEEEccC-CCCCcccccc--------CCCCcccCCCceECC--------------
Confidence 68999999999999999999999999999998 6653 46655 899999999998644
Q ss_pred CCCCCCCCCCCCeeeeEeCCCCeEeEEEEEEEEEeeeCCCCceeeeeeEeeeeeccCCCCC--CCCceEEecCCCC----
Q 046757 158 SLTFCPTPTSPCAYDYRYADGSAAKGIFGKERVTIGLENGGKTRIEEVVMGCSDTIQGQIF--AEADGVLGLSYDK---- 231 (445)
Q Consensus 158 ~~~~c~~~~~~~~~~~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~v~~~~fG~~~~~~~~~~--~~~~GilGLg~~~---- 231 (445)
|.|.+.|++|+ +.|.+++|+|+|+ ++.++++.|||++...+..+ ...+||||||++.
T Consensus 59 -----------~~~~~~Yg~Gs-~~G~~~~D~i~~g-----~~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~ 121 (318)
T cd05477 59 -----------ETFSLQYGSGS-LTGIFGYDTVTVQ-----GIIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAG 121 (318)
T ss_pred -----------cEEEEEECCcE-EEEEEEeeEEEEC-----CEEEcCEEEEEEEecccccccccceeeEeecCccccccc
Confidence 68999999998 8999999999999 78999999999998755333 4679999999853
Q ss_pred --CchhhhhhcCcCCCCCceEEeccCCCCCCCCcceEEECCCC---CCCCeeeeeeecCCCCCCeeEEEeeEEECCEEee
Q 046757 232 --YSFAQKVTNGSTFARGKFAYCLVDHLSHKNVSNYLIFGEES---KRMRMRMRYTLLGLIGPDYGVSVKGISIGGVMLN 306 (445)
Q Consensus 232 --~s~~~~l~~~~~i~~~~FS~~l~~~~~~~~~~g~l~fGg~d---~~~~~~~~pl~~~~~~~~y~v~l~~i~vg~~~~~ 306 (445)
.+++++|++++.|.+++||+||.+.. ....|.|+|||+| +.+++.|+|+. ...+|.|.|++|+|+++.+.
T Consensus 122 ~~~~~~~~L~~~g~i~~~~FS~~L~~~~--~~~~g~l~fGg~d~~~~~g~l~~~pv~---~~~~w~v~l~~i~v~g~~~~ 196 (318)
T cd05477 122 GATTVMQGMMQQNLLQAPIFSFYLSGQQ--GQQGGELVFGGVDNNLYTGQIYWTPVT---SETYWQIGIQGFQINGQATG 196 (318)
T ss_pred CCCCHHHHHHhcCCcCCCEEEEEEcCCC--CCCCCEEEEcccCHHHcCCceEEEecC---CceEEEEEeeEEEECCEEec
Confidence 46889999999999999999998642 2346999999998 67899999998 46899999999999998875
Q ss_pred cCCcccccCCCCcEEEccccceeeechhhHHHHHHHHHHHhhccccCCCCCCcccccccCCCCccccCeEEEEEcCCCEE
Q 046757 307 IPSQVWDFNRGGGTAFDSGTTLTFLAEPAYKPVVAALEMSLSRYQRLKRDAPFEYCFNSTGFDESSVPKLVFHFADGARF 386 (445)
Q Consensus 307 ~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~l~f~f~gg~~~ 386 (445)
+. ..+..+||||||++++||+++|++|++++.... .. ..+|.++|.....+|.|+|+| +|+++
T Consensus 197 ~~------~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~----~~------~~~~~~~C~~~~~~p~l~~~f-~g~~~ 259 (318)
T cd05477 197 WC------SQGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQQ----DQ------YGQYVVNCNNIQNLPTLTFTI-NGVSF 259 (318)
T ss_pred cc------CCCceeeECCCCccEECCHHHHHHHHHHhCCcc----cc------CCCEEEeCCccccCCcEEEEE-CCEEE
Confidence 32 234579999999999999999999988874322 11 123555555567789999999 88999
Q ss_pred EeCCCceEEEeCCceEEE-EEEeCC-----CCCceeechhhhceeEEEEeCCCCEEEEeeC
Q 046757 387 EPHTKSYIIRVAHGIRCL-GFVSAT-----WPGASAIGNIMQQNYFWEFDLLKDRLGFAPS 441 (445)
Q Consensus 387 ~l~~~~yi~~~~~~~~C~-~~~~~~-----~~~~~ilG~~fl~~~y~vfD~~~~~igfa~~ 441 (445)
.||+++|+.+. ...|+ +|++.. ....||||+.|||++|+|||++++|||||++
T Consensus 260 ~v~~~~y~~~~--~~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 260 PLPPSAYILQN--NGYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred EECHHHeEecC--CCeEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 99999999975 34797 887542 1246999999999999999999999999986
No 9
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=2.4e-55 Score=427.44 Aligned_cols=303 Identities=24% Similarity=0.447 Sum_probs=250.4
Q ss_pred ecceecccCccccEEEEEEeCCCCceEEEEEEcCCCeeeeccCCCCCC-CCCCCCccCCCCCCCcCCCCCCcccccCCCC
Q 046757 68 MPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGP-SCTKKGTIAGSRRRVFKADLSSSFKTIPCSS 146 (445)
Q Consensus 68 ~pl~~~~~~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~~c~~-~C~~~~~~~~~~~~~f~p~~Sst~~~~~c~~ 146 (445)
+||.+..+ ..|+++|.||||+|++.|+|||||+++||+|. .|.. .|..+ +.|+|++|+|++...
T Consensus 1 ~~l~n~~~---~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~-~C~~~~C~~~--------~~y~~~~Sst~~~~~--- 65 (320)
T cd05488 1 VPLTNYLN---AQYFTDITLGTPPQKFKVILDTGSSNLWVPSV-KCGSIACFLH--------SKYDSSASSTYKANG--- 65 (320)
T ss_pred CcccccCC---CEEEEEEEECCCCcEEEEEEecCCcceEEEcC-CCCCcccCCc--------ceECCCCCcceeeCC---
Confidence 46666543 88999999999999999999999999999998 6753 57665 799999999987643
Q ss_pred ccchhhhhcccCCCCCCCCCCCCeeeeEeCCCCeEeEEEEEEEEEeeeCCCCceeeeeeEeeeeeccCCCCC--CCCceE
Q 046757 147 DMCKSEFARLFSLTFCPTPTSPCAYDYRYADGSAAKGIFGKERVTIGLENGGKTRIEEVVMGCSDTIQGQIF--AEADGV 224 (445)
Q Consensus 147 ~~C~~~~~~~~~~~~c~~~~~~~~~~~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~v~~~~fG~~~~~~~~~~--~~~~Gi 224 (445)
|.|.+.|++|+ +.|.+++|+|+|+ ++.++++.|||++...+..+ ...+||
T Consensus 66 ----------------------~~~~~~y~~g~-~~G~~~~D~v~ig-----~~~~~~~~f~~a~~~~g~~~~~~~~dGi 117 (320)
T cd05488 66 ----------------------TEFKIQYGSGS-LEGFVSQDTLSIG-----DLTIKKQDFAEATSEPGLAFAFGKFDGI 117 (320)
T ss_pred ----------------------CEEEEEECCce-EEEEEEEeEEEEC-----CEEECCEEEEEEecCCCcceeeeeeceE
Confidence 68999999998 8999999999998 68899999999987765433 467999
Q ss_pred EecCCCCCch------hhhhhcCcCCCCCceEEeccCCCCCCCCcceEEECCCC---CCCCeeeeeeecCCCCCCeeEEE
Q 046757 225 LGLSYDKYSF------AQKVTNGSTFARGKFAYCLVDHLSHKNVSNYLIFGEES---KRMRMRMRYTLLGLIGPDYGVSV 295 (445)
Q Consensus 225 lGLg~~~~s~------~~~l~~~~~i~~~~FS~~l~~~~~~~~~~g~l~fGg~d---~~~~~~~~pl~~~~~~~~y~v~l 295 (445)
||||++..+. ..+|++++.|.+++||+||.+.. ...|.|+|||+| +.+++.|+|++ ...+|.|.+
T Consensus 118 lGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~---~~~G~l~fGg~d~~~~~g~l~~~p~~---~~~~w~v~l 191 (320)
T cd05488 118 LGLAYDTISVNKIVPPFYNMINQGLLDEPVFSFYLGSSE---EDGGEATFGGIDESRFTGKITWLPVR---RKAYWEVEL 191 (320)
T ss_pred EecCCccccccCCCCHHHHHHhcCCCCCCEEEEEecCCC---CCCcEEEECCcCHHHcCCceEEEeCC---cCcEEEEEe
Confidence 9999987653 34678899999899999998652 357999999998 67899999998 367999999
Q ss_pred eeEEECCEEeecCCcccccCCCCcEEEccccceeeechhhHHHHHHHHHHHhhccccCCCCCCcccccccCCCCccccCe
Q 046757 296 KGISIGGVMLNIPSQVWDFNRGGGTAFDSGTTLTFLAEPAYKPVVAALEMSLSRYQRLKRDAPFEYCFNSTGFDESSVPK 375 (445)
Q Consensus 296 ~~i~vg~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~ 375 (445)
++|+||++.+.. .+..++|||||++++||++++++|.+++.+. .. ...+|.++|.....+|.
T Consensus 192 ~~i~vg~~~~~~--------~~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~----~~------~~~~~~~~C~~~~~~P~ 253 (320)
T cd05488 192 EKIGLGDEELEL--------ENTGAAIDTGTSLIALPSDLAEMLNAEIGAK----KS------WNGQYTVDCSKVDSLPD 253 (320)
T ss_pred CeEEECCEEecc--------CCCeEEEcCCcccccCCHHHHHHHHHHhCCc----cc------cCCcEEeeccccccCCC
Confidence 999999987753 2456999999999999999888877766321 11 12345555555567999
Q ss_pred EEEEEcCCCEEEeCCCceEEEeCCceEEE-EEEeCC----CCCceeechhhhceeEEEEeCCCCEEEEee
Q 046757 376 LVFHFADGARFEPHTKSYIIRVAHGIRCL-GFVSAT----WPGASAIGNIMQQNYFWEFDLLKDRLGFAP 440 (445)
Q Consensus 376 l~f~f~gg~~~~l~~~~yi~~~~~~~~C~-~~~~~~----~~~~~ilG~~fl~~~y~vfD~~~~~igfa~ 440 (445)
|+|+| +|+++.||+++|+++.. ..|+ .+...+ ....||||+.|||++|+|||++++|||||+
T Consensus 254 i~f~f-~g~~~~i~~~~y~~~~~--g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 254 LTFNF-DGYNFTLGPFDYTLEVS--GSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred EEEEE-CCEEEEECHHHheecCC--CeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 99999 89999999999998643 3698 676543 124699999999999999999999999996
No 10
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=4.2e-55 Score=424.99 Aligned_cols=297 Identities=26% Similarity=0.414 Sum_probs=245.3
Q ss_pred ecceecccCccccEEEEEEeCCCCceEEEEEEcCCCeeeeccCCCCC--CCCCCCCccCCCCCCCcCCCCCCcccccCCC
Q 046757 68 MPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCG--PSCTKKGTIAGSRRRVFKADLSSSFKTIPCS 145 (445)
Q Consensus 68 ~pl~~~~~~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~~c~--~~C~~~~~~~~~~~~~f~p~~Sst~~~~~c~ 145 (445)
+||.+..+ .+|+++|.||||+|++.|+|||||+++||+|. .|. ..|..+ +.|||++|+|++...
T Consensus 1 ~~l~n~~~---~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~-~C~~~~~C~~~--------~~y~~~~SsT~~~~~-- 66 (317)
T cd06098 1 VALKNYLD---AQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSS-KCYFSIACYFH--------SKYKSSKSSTYKKNG-- 66 (317)
T ss_pred CcccccCC---CEEEEEEEECCCCeEEEEEECCCccceEEecC-CCCCCcccccc--------CcCCcccCCCcccCC--
Confidence 35665544 89999999999999999999999999999998 675 257766 899999999988654
Q ss_pred CccchhhhhcccCCCCCCCCCCCCeeeeEeCCCCeEeEEEEEEEEEeeeCCCCceeeeeeEeeeeeccCCCCC--CCCce
Q 046757 146 SDMCKSEFARLFSLTFCPTPTSPCAYDYRYADGSAAKGIFGKERVTIGLENGGKTRIEEVVMGCSDTIQGQIF--AEADG 223 (445)
Q Consensus 146 ~~~C~~~~~~~~~~~~c~~~~~~~~~~~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~v~~~~fG~~~~~~~~~~--~~~~G 223 (445)
+.+.+.|++|+ +.|.+++|+|+|+ +..++++.||+++...+..| ...+|
T Consensus 67 -----------------------~~~~i~Yg~G~-~~G~~~~D~v~ig-----~~~v~~~~f~~~~~~~~~~~~~~~~dG 117 (317)
T cd06098 67 -----------------------TSASIQYGTGS-ISGFFSQDSVTVG-----DLVVKNQVFIEATKEPGLTFLLAKFDG 117 (317)
T ss_pred -----------------------CEEEEEcCCce-EEEEEEeeEEEEC-----CEEECCEEEEEEEecCCccccccccce
Confidence 47889999998 8999999999999 68999999999987655334 56899
Q ss_pred EEecCCCCCc------hhhhhhcCcCCCCCceEEeccCCCCCCCCcceEEECCCC---CCCCeeeeeeecCCCCCCeeEE
Q 046757 224 VLGLSYDKYS------FAQKVTNGSTFARGKFAYCLVDHLSHKNVSNYLIFGEES---KRMRMRMRYTLLGLIGPDYGVS 294 (445)
Q Consensus 224 ilGLg~~~~s------~~~~l~~~~~i~~~~FS~~l~~~~~~~~~~g~l~fGg~d---~~~~~~~~pl~~~~~~~~y~v~ 294 (445)
|||||++..+ ++.+|++++.|++++||+||.+... ....|.|+|||+| +.|+++|+|+. ...+|.|.
T Consensus 118 ilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~-~~~~G~l~fGg~d~~~~~g~l~~~pv~---~~~~w~v~ 193 (317)
T cd06098 118 ILGLGFQEISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPD-EEEGGELVFGGVDPKHFKGEHTYVPVT---RKGYWQFE 193 (317)
T ss_pred eccccccchhhcCCCCHHHHHHhcCCCCCCEEEEEEecCCC-CCCCcEEEECccChhhcccceEEEecC---cCcEEEEE
Confidence 9999997654 5567899999998999999975421 2357999999998 67899999998 36799999
Q ss_pred EeeEEECCEEeecCCcccccCCCCcEEEccccceeeechhhHHHHHHHHHHHhhccccCCCCCCcccccccCCCCccccC
Q 046757 295 VKGISIGGVMLNIPSQVWDFNRGGGTAFDSGTTLTFLAEPAYKPVVAALEMSLSRYQRLKRDAPFEYCFNSTGFDESSVP 374 (445)
Q Consensus 295 l~~i~vg~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P 374 (445)
+++|+|+++.+... .....+||||||+++++|+++++++. +..+|+. ...+|
T Consensus 194 l~~i~v~g~~~~~~------~~~~~aivDTGTs~~~lP~~~~~~i~-----------------~~~~C~~-----~~~~P 245 (317)
T cd06098 194 MGDVLIGGKSTGFC------AGGCAAIADSGTSLLAGPTTIVTQIN-----------------SAVDCNS-----LSSMP 245 (317)
T ss_pred eCeEEECCEEeeec------CCCcEEEEecCCcceeCCHHHHHhhh-----------------ccCCccc-----cccCC
Confidence 99999999876542 23467999999999999998654332 2345654 45789
Q ss_pred eEEEEEcCCCEEEeCCCceEEEeCC--ceEEE-EEEeCC----CCCceeechhhhceeEEEEeCCCCEEEEee
Q 046757 375 KLVFHFADGARFEPHTKSYIIRVAH--GIRCL-GFVSAT----WPGASAIGNIMQQNYFWEFDLLKDRLGFAP 440 (445)
Q Consensus 375 ~l~f~f~gg~~~~l~~~~yi~~~~~--~~~C~-~~~~~~----~~~~~ilG~~fl~~~y~vfD~~~~~igfa~ 440 (445)
+|+|+| +|+.++|++++|+++..+ ...|+ +|+..+ ....||||+.|||++|+|||++++|||||+
T Consensus 246 ~i~f~f-~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 246 NVSFTI-GGKTFELTPEQYILKVGEGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred cEEEEE-CCEEEEEChHHeEEeecCCCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 999999 899999999999987533 35798 787543 134699999999999999999999999996
No 11
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=4.6e-55 Score=426.70 Aligned_cols=307 Identities=23% Similarity=0.399 Sum_probs=253.1
Q ss_pred ecceecccCccccEEEEEEeCCCCceEEEEEEcCCCeeeeccCCCCCC---CCCCCCccCCCCCCCcCCCCCCcccccCC
Q 046757 68 MPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGP---SCTKKGTIAGSRRRVFKADLSSSFKTIPC 144 (445)
Q Consensus 68 ~pl~~~~~~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~~c~~---~C~~~~~~~~~~~~~f~p~~Sst~~~~~c 144 (445)
.||.+..+ ..|+++|.||||+|++.|++||||+++||+|. .|.. .|..+ +.|||++|+|++...
T Consensus 2 ~~~~n~~~---~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~-~C~~~~~~c~~~--------~~y~~~~Sst~~~~~- 68 (329)
T cd05485 2 EPLSNYMD---AQYYGVITIGTPPQSFKVVFDTGSSNLWVPSK-KCSWTNIACLLH--------NKYDSTKSSTYKKNG- 68 (329)
T ss_pred ccceeccC---CeEEEEEEECCCCcEEEEEEcCCCccEEEecC-CCCCCCccccCC--------CeECCcCCCCeEECC-
Confidence 35666554 89999999999999999999999999999998 5652 36544 789999999998754
Q ss_pred CCccchhhhhcccCCCCCCCCCCCCeeeeEeCCCCeEeEEEEEEEEEeeeCCCCceeeeeeEeeeeeccCCCCC--CCCc
Q 046757 145 SSDMCKSEFARLFSLTFCPTPTSPCAYDYRYADGSAAKGIFGKERVTIGLENGGKTRIEEVVMGCSDTIQGQIF--AEAD 222 (445)
Q Consensus 145 ~~~~C~~~~~~~~~~~~c~~~~~~~~~~~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~v~~~~fG~~~~~~~~~~--~~~~ 222 (445)
|.|.+.|++|+ +.|.+++|+|+|+ +..++++.||++....+..| ...+
T Consensus 69 ------------------------~~~~i~Y~~g~-~~G~~~~D~v~ig-----~~~~~~~~fg~~~~~~~~~~~~~~~~ 118 (329)
T cd05485 69 ------------------------TEFAIQYGSGS-LSGFLSTDTVSVG-----GVSVKGQTFAEAINEPGLTFVAAKFD 118 (329)
T ss_pred ------------------------eEEEEEECCce-EEEEEecCcEEEC-----CEEECCEEEEEEEecCCccccccccc
Confidence 68999999998 8999999999998 68899999999987765334 4679
Q ss_pred eEEecCCCCCc------hhhhhhcCcCCCCCceEEeccCCCCCCCCcceEEECCCC---CCCCeeeeeeecCCCCCCeeE
Q 046757 223 GVLGLSYDKYS------FAQKVTNGSTFARGKFAYCLVDHLSHKNVSNYLIFGEES---KRMRMRMRYTLLGLIGPDYGV 293 (445)
Q Consensus 223 GilGLg~~~~s------~~~~l~~~~~i~~~~FS~~l~~~~~~~~~~g~l~fGg~d---~~~~~~~~pl~~~~~~~~y~v 293 (445)
||||||++..+ ++.+|++++.|.+++||+||.+..+ ....|.|+|||+| +.|+++|+|+. ...+|.|
T Consensus 119 GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~-~~~~G~l~fGg~d~~~~~g~l~~~p~~---~~~~~~v 194 (329)
T cd05485 119 GILGMGYSSISVDGVVPVFYNMVNQKLVDAPVFSFYLNRDPS-AKEGGELILGGSDPKHYTGNFTYLPVT---RKGYWQF 194 (329)
T ss_pred eEEEcCCccccccCCCCHHHHHHhCCCCCCCEEEEEecCCCC-CCCCcEEEEcccCHHHcccceEEEEcC---CceEEEE
Confidence 99999998765 4678899999988999999986432 2346999999998 67899999997 4689999
Q ss_pred EEeeEEECCEEeecCCcccccCCCCcEEEccccceeeechhhHHHHHHHHHHHhhccccCCCCCCcccccccCCCCcccc
Q 046757 294 SVKGISIGGVMLNIPSQVWDFNRGGGTAFDSGTTLTFLAEPAYKPVVAALEMSLSRYQRLKRDAPFEYCFNSTGFDESSV 373 (445)
Q Consensus 294 ~l~~i~vg~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~ 373 (445)
.+++|+|+++.+. ..+..+||||||++++||++++++|.+++... ... ..||.++|.....+
T Consensus 195 ~~~~i~v~~~~~~--------~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~----~~~------~~~~~~~C~~~~~~ 256 (329)
T cd05485 195 KMDSVSVGEGEFC--------SGGCQAIADTGTSLIAGPVDEIEKLNNAIGAK----PII------GGEYMVNCSAIPSL 256 (329)
T ss_pred EeeEEEECCeeec--------CCCcEEEEccCCcceeCCHHHHHHHHHHhCCc----ccc------CCcEEEeccccccC
Confidence 9999999998764 34567999999999999999998888777321 111 12455555555678
Q ss_pred CeEEEEEcCCCEEEeCCCceEEEeCC--ceEEE-EEEeCC----CCCceeechhhhceeEEEEeCCCCEEEEee
Q 046757 374 PKLVFHFADGARFEPHTKSYIIRVAH--GIRCL-GFVSAT----WPGASAIGNIMQQNYFWEFDLLKDRLGFAP 440 (445)
Q Consensus 374 P~l~f~f~gg~~~~l~~~~yi~~~~~--~~~C~-~~~~~~----~~~~~ilG~~fl~~~y~vfD~~~~~igfa~ 440 (445)
|+|+|+| +|+.+.||+++|+++..+ ...|+ +|+..+ ..+.||||+.|||++|+|||++++|||||+
T Consensus 257 p~i~f~f-gg~~~~i~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 257 PDITFVL-GGKSFSLTGKDYVLKVTQMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred CcEEEEE-CCEEeEEChHHeEEEecCCCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 9999999 899999999999997642 35798 788642 234699999999999999999999999985
No 12
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=9.9e-55 Score=424.24 Aligned_cols=301 Identities=22% Similarity=0.429 Sum_probs=248.2
Q ss_pred ccccEEEEEEeCCCCceEEEEEEcCCCeeeeccCCCCCC---CCCCCCccCCCCCCCcCCCCCCcccccCCCCccchhhh
Q 046757 77 GTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGP---SCTKKGTIAGSRRRVFKADLSSSFKTIPCSSDMCKSEF 153 (445)
Q Consensus 77 ~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~~c~~---~C~~~~~~~~~~~~~f~p~~Sst~~~~~c~~~~C~~~~ 153 (445)
.+..|+++|.||||+|+++|+|||||+++||+|. .|.. .|..+ +.|+|++|+|++...
T Consensus 5 ~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~-~C~~~~~~c~~~--------~~y~~~~SsT~~~~~---------- 65 (326)
T cd05487 5 LDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSS-KCSPLYTACVTH--------NLYDASDSSTYKENG---------- 65 (326)
T ss_pred CCCeEEEEEEECCCCcEEEEEEeCCccceEEccC-CCcCcchhhccc--------CcCCCCCCeeeeECC----------
Confidence 3489999999999999999999999999999987 5653 46655 899999999998654
Q ss_pred hcccCCCCCCCCCCCCeeeeEeCCCCeEeEEEEEEEEEeeeCCCCceeeeeeEeeeeeccCCCCC--CCCceEEecCCCC
Q 046757 154 ARLFSLTFCPTPTSPCAYDYRYADGSAAKGIFGKERVTIGLENGGKTRIEEVVMGCSDTIQGQIF--AEADGVLGLSYDK 231 (445)
Q Consensus 154 ~~~~~~~~c~~~~~~~~~~~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~v~~~~fG~~~~~~~~~~--~~~~GilGLg~~~ 231 (445)
|.|.+.|++|+ +.|.+++|+|+|+ +..+. +.||++.......+ ...+||||||++.
T Consensus 66 ---------------~~~~~~Yg~g~-~~G~~~~D~v~~g-----~~~~~-~~fg~~~~~~~~~~~~~~~dGilGLg~~~ 123 (326)
T cd05487 66 ---------------TEFTIHYASGT-VKGFLSQDIVTVG-----GIPVT-QMFGEVTALPAIPFMLAKFDGVLGMGYPK 123 (326)
T ss_pred ---------------EEEEEEeCCce-EEEEEeeeEEEEC-----CEEee-EEEEEEEeccCCccceeecceEEecCChh
Confidence 68999999998 9999999999998 56664 78999987643233 5689999999875
Q ss_pred C------chhhhhhcCcCCCCCceEEeccCCCCCCCCcceEEECCCC---CCCCeeeeeeecCCCCCCeeEEEeeEEECC
Q 046757 232 Y------SFAQKVTNGSTFARGKFAYCLVDHLSHKNVSNYLIFGEES---KRMRMRMRYTLLGLIGPDYGVSVKGISIGG 302 (445)
Q Consensus 232 ~------s~~~~l~~~~~i~~~~FS~~l~~~~~~~~~~g~l~fGg~d---~~~~~~~~pl~~~~~~~~y~v~l~~i~vg~ 302 (445)
. +++.+|++++.|++++||+||.+... ....|.|+|||+| +.|+++|+|+. ...+|.|.|++|+|++
T Consensus 124 ~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~-~~~~G~l~fGg~d~~~y~g~l~~~~~~---~~~~w~v~l~~i~vg~ 199 (326)
T cd05487 124 QAIGGVTPVFDNIMSQGVLKEDVFSVYYSRDSS-HSLGGEIVLGGSDPQHYQGDFHYINTS---KTGFWQIQMKGVSVGS 199 (326)
T ss_pred hcccCCCCHHHHHHhcCCCCCCEEEEEEeCCCC-CCCCcEEEECCcChhhccCceEEEECC---cCceEEEEecEEEECC
Confidence 5 46778999999999999999986421 2347999999998 67899999997 4679999999999999
Q ss_pred EEeecCCcccccCCCCcEEEccccceeeechhhHHHHHHHHHHHhhccccCCCCCCcccccccCCCCccccCeEEEEEcC
Q 046757 303 VMLNIPSQVWDFNRGGGTAFDSGTTLTFLAEPAYKPVVAALEMSLSRYQRLKRDAPFEYCFNSTGFDESSVPKLVFHFAD 382 (445)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~l~f~f~g 382 (445)
+.+.. ..+..+||||||++++||.++++++++++.+.. . . .+|.++|.....+|+|+|+| +
T Consensus 200 ~~~~~-------~~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~----~-~------~~y~~~C~~~~~~P~i~f~f-g 260 (326)
T cd05487 200 STLLC-------EDGCTAVVDTGASFISGPTSSISKLMEALGAKE----R-L------GDYVVKCNEVPTLPDISFHL-G 260 (326)
T ss_pred EEEec-------CCCCEEEECCCccchhCcHHHHHHHHHHhCCcc----c-C------CCEEEeccccCCCCCEEEEE-C
Confidence 87653 234679999999999999999999888874221 1 1 22444555466789999999 8
Q ss_pred CCEEEeCCCceEEEeCC--ceEEE-EEEeCC----CCCceeechhhhceeEEEEeCCCCEEEEeeC
Q 046757 383 GARFEPHTKSYIIRVAH--GIRCL-GFVSAT----WPGASAIGNIMQQNYFWEFDLLKDRLGFAPS 441 (445)
Q Consensus 383 g~~~~l~~~~yi~~~~~--~~~C~-~~~~~~----~~~~~ilG~~fl~~~y~vfD~~~~~igfa~~ 441 (445)
|..++|++++|+++..+ +..|+ +|+..+ ..+.||||+.|||++|+|||++++|||||++
T Consensus 261 g~~~~v~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 261 GKEYTLSSSDYVLQDSDFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred CEEEEeCHHHhEEeccCCCCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 99999999999997643 45797 888643 1247999999999999999999999999986
No 13
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=7.9e-55 Score=424.72 Aligned_cols=302 Identities=24% Similarity=0.396 Sum_probs=243.4
Q ss_pred ccEEEEEEeCCCCceEEEEEEcCCCeeeeccCCCCCCCCCCCCccCCCCCCCcCCCCCCcccccCCCCccchhhhhcccC
Q 046757 79 GMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKADLSSSFKTIPCSSDMCKSEFARLFS 158 (445)
Q Consensus 79 ~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~~c~~~C~~~~~~~~~~~~~f~p~~Sst~~~~~c~~~~C~~~~~~~~~ 158 (445)
+.|+++|.||||+|++.|+|||||+++||+|. .|.. |..+ ..+.|||++|+|++.+.|.+..|..
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~-~C~~-c~~~------~~~~y~~~~Sst~~~~~C~~~~c~~------- 66 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCS-QCKN-CGIH------MEPPYNLNNSITSSILYCDCNKCCY------- 66 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecC-CCCC-cCCC------CCCCcCcccccccccccCCCccccc-------
Confidence 57999999999999999999999999999998 7875 7665 4579999999999999999999962
Q ss_pred CCCCCCCCCCCeeeeEeCCCCeEeEEEEEEEEEeeeCCCC--ceeeeeeEeeeeeccCCCCC--CCCceEEecCCCCCc-
Q 046757 159 LTFCPTPTSPCAYDYRYADGSAAKGIFGKERVTIGLENGG--KTRIEEVVMGCSDTIQGQIF--AEADGVLGLSYDKYS- 233 (445)
Q Consensus 159 ~~~c~~~~~~~~~~~~Y~~gs~~~G~~~~D~v~i~~~~~~--~~~v~~~~fG~~~~~~~~~~--~~~~GilGLg~~~~s- 233 (445)
+..|. ++.|.|.+.|++|+.+.|.+++|+|+|++.... .....++.|||+....+ .| ...+||||||+...+
T Consensus 67 ~~~~~--~~~~~~~i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~ 143 (326)
T cd06096 67 CLSCL--NNKCEYSISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETN-LFLTQQATGILGLSLTKNNG 143 (326)
T ss_pred cCcCC--CCcCcEEEEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccC-cccccccceEEEccCCcccc
Confidence 23443 346999999999988999999999999853211 01113578999988765 33 568999999998753
Q ss_pred ---hhhhhhcCcCCCC--CceEEeccCCCCCCCCcceEEECCCC---CC----------CCeeeeeeecCCCCCCeeEEE
Q 046757 234 ---FAQKVTNGSTFAR--GKFAYCLVDHLSHKNVSNYLIFGEES---KR----------MRMRMRYTLLGLIGPDYGVSV 295 (445)
Q Consensus 234 ---~~~~l~~~~~i~~--~~FS~~l~~~~~~~~~~g~l~fGg~d---~~----------~~~~~~pl~~~~~~~~y~v~l 295 (445)
...+|.+++.+.. ++||+||.+ ..|.|+||++| +. +++.|+|+.. ..+|.|.+
T Consensus 144 ~~~~~~~l~~~~~~~~~~~~FS~~l~~------~~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~---~~~y~v~l 214 (326)
T cd06096 144 LPTPIILLFTKRPKLKKDKIFSICLSE------DGGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITR---KYYYYVKL 214 (326)
T ss_pred cCchhHHHHHhcccccCCceEEEEEcC------CCeEEEECccChhhhcccccccccccCCceEEeccC---CceEEEEE
Confidence 2223445555543 899999964 36999999998 33 7899999984 58999999
Q ss_pred eeEEECCEEeecCCcccccCCCCcEEEccccceeeechhhHHHHHHHHHHHhhccccCCCCCCcccccccCCCCccccCe
Q 046757 296 KGISIGGVMLNIPSQVWDFNRGGGTAFDSGTTLTFLAEPAYKPVVAALEMSLSRYQRLKRDAPFEYCFNSTGFDESSVPK 375 (445)
Q Consensus 296 ~~i~vg~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~ 375 (445)
++|+|+++..... ......+||||||++++||+++|++|.+++ |+
T Consensus 215 ~~i~vg~~~~~~~-----~~~~~~aivDSGTs~~~lp~~~~~~l~~~~------------------------------P~ 259 (326)
T cd06096 215 EGLSVYGTTSNSG-----NTKGLGMLVDSGSTLSHFPEDLYNKINNFF------------------------------PT 259 (326)
T ss_pred EEEEEccccccee-----cccCCCEEEeCCCCcccCCHHHHHHHHhhc------------------------------Cc
Confidence 9999998761100 035678999999999999999988877654 89
Q ss_pred EEEEEcCCCEEEeCCCceEEEeCCceEEEEEEeCCCCCceeechhhhceeEEEEeCCCCEEEEeeCCCC
Q 046757 376 LVFHFADGARFEPHTKSYIIRVAHGIRCLGFVSATWPGASAIGNIMQQNYFWEFDLLKDRLGFAPSTCA 444 (445)
Q Consensus 376 l~f~f~gg~~~~l~~~~yi~~~~~~~~C~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfa~~~C~ 444 (445)
|+|+|++|++++|+|++|+++..+...|+++.... +.+|||++|||++|+|||++++|||||+++|.
T Consensus 260 i~~~f~~g~~~~i~p~~y~~~~~~~~c~~~~~~~~--~~~ILG~~flr~~y~vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 260 ITIIFENNLKIDWKPSSYLYKKESFWCKGGEKSVS--NKPILGASFFKNKQIIFDLDNNRIGFVESNCP 326 (326)
T ss_pred EEEEEcCCcEEEECHHHhccccCCceEEEEEecCC--CceEEChHHhcCcEEEEECcCCEEeeEcCCCC
Confidence 99999558999999999999765554455665443 57999999999999999999999999999995
No 14
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=7e-54 Score=421.13 Aligned_cols=325 Identities=22% Similarity=0.381 Sum_probs=259.0
Q ss_pred eCCCCce-EEEEEEcCCCeeeeccCCCCCCCCCCCCccCCCCCCCcCCCCCCcccccCCCCccchhhhhcccCCC-----
Q 046757 87 VGTPSQK-LRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKADLSSSFKTIPCSSDMCKSEFARLFSLT----- 160 (445)
Q Consensus 87 iGTP~q~-~~l~~DTGS~~~Wv~~~~~c~~~C~~~~~~~~~~~~~f~p~~Sst~~~~~c~~~~C~~~~~~~~~~~----- 160 (445)
+|||-.+ +.|++||||+++||+|. + .+|+||+.++|+++.|+... .+++.
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~-~---------------------~~sst~~~~~C~s~~C~~~~--~~~~~~~~~~ 57 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCD-A---------------------GHSSTYQTVPCSSSVCSLAN--RYHCPGTCGG 57 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCC-C---------------------CCcCCCCccCcCChhhcccc--ccCCCccccC
Confidence 6888777 99999999999999987 2 45779999999999998421 12221
Q ss_pred ----CCCCCCCCCeeeeE-eCCCCeEeEEEEEEEEEeeeCCCCc---eeeeeeEeeeeeccCCCC-CCCCceEEecCCCC
Q 046757 161 ----FCPTPTSPCAYDYR-YADGSAAKGIFGKERVTIGLENGGK---TRIEEVVMGCSDTIQGQI-FAEADGVLGLSYDK 231 (445)
Q Consensus 161 ----~c~~~~~~~~~~~~-Y~~gs~~~G~~~~D~v~i~~~~~~~---~~v~~~~fG~~~~~~~~~-~~~~~GilGLg~~~ 231 (445)
.|. ++.|.|... |++|+.+.|.+++|+|+|+..++.. ..++++.|||+....... +...+||||||++.
T Consensus 58 ~~~~~c~--~~~C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~~ 135 (362)
T cd05489 58 APGPGCG--NNTCTAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSP 135 (362)
T ss_pred CCCCCCC--CCcCeeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCccccccccccCCCc
Confidence 342 235888655 7899889999999999998654433 478999999998864222 34689999999999
Q ss_pred CchhhhhhcCcCCCCCceEEeccCCCCCCCCcceEEECCCCC---------CCCeeeeeeecCC-CCCCeeEEEeeEEEC
Q 046757 232 YSFAQKVTNGSTFARGKFAYCLVDHLSHKNVSNYLIFGEESK---------RMRMRMRYTLLGL-IGPDYGVSVKGISIG 301 (445)
Q Consensus 232 ~s~~~~l~~~~~i~~~~FS~~l~~~~~~~~~~g~l~fGg~d~---------~~~~~~~pl~~~~-~~~~y~v~l~~i~vg 301 (445)
+|++.||..+..+ +++|||||.+. ....|.|+||+.+. .+.+.|+||+.++ ...+|+|+|++|+||
T Consensus 136 lSl~sql~~~~~~-~~~FS~CL~~~---~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg 211 (362)
T cd05489 136 LSLPAQLASAFGV-ARKFALCLPSS---PGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVN 211 (362)
T ss_pred cchHHHhhhhcCC-CcceEEEeCCC---CCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEEC
Confidence 9999999765554 49999999864 23479999999872 3789999999764 357999999999999
Q ss_pred CEEeecCCcccc--cCCCCcEEEccccceeeechhhHHHHHHHHHHHhhccccCCCC-CCcccccccCCC----CccccC
Q 046757 302 GVMLNIPSQVWD--FNRGGGTAFDSGTTLTFLAEPAYKPVVAALEMSLSRYQRLKRD-APFEYCFNSTGF----DESSVP 374 (445)
Q Consensus 302 ~~~~~~~~~~~~--~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~C~~~~~~----~~~~~P 374 (445)
++.+.+++..+. ..+.+++||||||++++||+++|++|.++|.+++......... ...+.||..... ....+|
T Consensus 212 ~~~l~~~~~~~~~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P 291 (362)
T cd05489 212 GHAVPLNPTLSANDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVP 291 (362)
T ss_pred CEECCCCchhccccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccc
Confidence 999887665542 2356789999999999999999999999999887644332221 233799986432 146799
Q ss_pred eEEEEEcC-CCEEEeCCCceEEEeCCceEEEEEEeCCC--CCceeechhhhceeEEEEeCCCCEEEEeeC
Q 046757 375 KLVFHFAD-GARFEPHTKSYIIRVAHGIRCLGFVSATW--PGASAIGNIMQQNYFWEFDLLKDRLGFAPS 441 (445)
Q Consensus 375 ~l~f~f~g-g~~~~l~~~~yi~~~~~~~~C~~~~~~~~--~~~~ilG~~fl~~~y~vfD~~~~~igfa~~ 441 (445)
+|+|+|+| |++++||+++|+++..++..|++|...+. ...||||+.|||++|++||++++|||||+.
T Consensus 292 ~it~~f~g~g~~~~l~~~ny~~~~~~~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 292 AIDLVLDGGGVNWTIFGANSMVQVKGGVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred eEEEEEeCCCeEEEEcCCceEEEcCCCcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccC
Confidence 99999966 79999999999998777778999987653 347999999999999999999999999974
No 15
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=2.7e-53 Score=424.72 Aligned_cols=307 Identities=20% Similarity=0.366 Sum_probs=248.4
Q ss_pred CceeecceecccCccccEEEEEEeCCCCceEEEEEEcCCCeeeeccCCCCCC-CCCCCCccCCCCCCCcCCCCCCccccc
Q 046757 64 SAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGP-SCTKKGTIAGSRRRVFKADLSSSFKTI 142 (445)
Q Consensus 64 ~~~~~pl~~~~~~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~~c~~-~C~~~~~~~~~~~~~f~p~~Sst~~~~ 142 (445)
....+||.+..+ .+|+++|.||||+|++.|+|||||+++||+|. .|.. .|..+ +.|||++|+|++..
T Consensus 126 ~~~~v~L~n~~n---~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~-~C~~~~C~~~--------~~yd~s~SsT~~~~ 193 (453)
T PTZ00147 126 EFDNVELKDLAN---VMSYGEAKLGDNGQKFNFIFDTGSANLWVPSI-KCTTEGCETK--------NLYDSSKSKTYEKD 193 (453)
T ss_pred CCCeeeccccCC---CEEEEEEEECCCCeEEEEEEeCCCCcEEEeec-CCCcccccCC--------CccCCccCcceEEC
Confidence 345678876654 89999999999999999999999999999998 6653 56665 89999999999875
Q ss_pred CCCCccchhhhhcccCCCCCCCCCCCCeeeeEeCCCCeEeEEEEEEEEEeeeCCCCceeeeeeEeeeeeccCCC--CC--
Q 046757 143 PCSSDMCKSEFARLFSLTFCPTPTSPCAYDYRYADGSAAKGIFGKERVTIGLENGGKTRIEEVVMGCSDTIQGQ--IF-- 218 (445)
Q Consensus 143 ~c~~~~C~~~~~~~~~~~~c~~~~~~~~~~~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~v~~~~fG~~~~~~~~--~~-- 218 (445)
. +.|.+.|++|+ +.|.+++|+|+|+ ++.++ ..|+++....+. .+
T Consensus 194 ~-------------------------~~f~i~Yg~Gs-vsG~~~~DtVtiG-----~~~v~-~qF~~~~~~~~f~~~~~~ 241 (453)
T PTZ00147 194 G-------------------------TKVEMNYVSGT-VSGFFSKDLVTIG-----NLSVP-YKFIEVTDTNGFEPFYTE 241 (453)
T ss_pred C-------------------------CEEEEEeCCCC-EEEEEEEEEEEEC-----CEEEE-EEEEEEEeccCccccccc
Confidence 4 58999999998 9999999999999 67887 578888765442 12
Q ss_pred CCCceEEecCCCCCc------hhhhhhcCcCCCCCceEEeccCCCCCCCCcceEEECCCC---CCCCeeeeeeecCCCCC
Q 046757 219 AEADGVLGLSYDKYS------FAQKVTNGSTFARGKFAYCLVDHLSHKNVSNYLIFGEES---KRMRMRMRYTLLGLIGP 289 (445)
Q Consensus 219 ~~~~GilGLg~~~~s------~~~~l~~~~~i~~~~FS~~l~~~~~~~~~~g~l~fGg~d---~~~~~~~~pl~~~~~~~ 289 (445)
...+||||||++.++ ++.+|++++.|++++||+||++. ....|.|+|||+| +.|++.|+|+. ...
T Consensus 242 ~~~DGILGLG~~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L~~~---~~~~G~L~fGGiD~~ky~G~l~y~pl~---~~~ 315 (453)
T PTZ00147 242 SDFDGIFGLGWKDLSIGSVDPYVVELKNQNKIEQAVFTFYLPPE---DKHKGYLTIGGIEERFYEGPLTYEKLN---HDL 315 (453)
T ss_pred ccccceecccCCccccccCCCHHHHHHHcCCCCccEEEEEecCC---CCCCeEEEECCcChhhcCCceEEEEcC---CCc
Confidence 468999999998764 56689999999989999999764 2347999999999 67999999997 467
Q ss_pred CeeEEEeeEEECCEEeecCCcccccCCCCcEEEccccceeeechhhHHHHHHHHHHHhhccccCCCCCCcccccccCCCC
Q 046757 290 DYGVSVKGISIGGVMLNIPSQVWDFNRGGGTAFDSGTTLTFLAEPAYKPVVAALEMSLSRYQRLKRDAPFEYCFNSTGFD 369 (445)
Q Consensus 290 ~y~v~l~~i~vg~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~ 369 (445)
+|.|.++ +.+++... ....+||||||+++++|+++++++.+++.... .+. . ..+..+|+.
T Consensus 316 ~W~V~l~-~~vg~~~~----------~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~--~~~-~-~~y~~~C~~----- 375 (453)
T PTZ00147 316 YWQVDLD-VHFGNVSS----------EKANVIVDSGTSVITVPTEFLNKFVESLDVFK--VPF-L-PLYVTTCNN----- 375 (453)
T ss_pred eEEEEEE-EEECCEec----------CceeEEECCCCchhcCCHHHHHHHHHHhCCee--cCC-C-CeEEEeCCC-----
Confidence 9999998 57776431 34679999999999999999888888773211 111 1 113445653
Q ss_pred ccccCeEEEEEcCCCEEEeCCCceEEEeC--CceEEE-EEEeCCC-CCceeechhhhceeEEEEeCCCCEEEEeeCC
Q 046757 370 ESSVPKLVFHFADGARFEPHTKSYIIRVA--HGIRCL-GFVSATW-PGASAIGNIMQQNYFWEFDLLKDRLGFAPST 442 (445)
Q Consensus 370 ~~~~P~l~f~f~gg~~~~l~~~~yi~~~~--~~~~C~-~~~~~~~-~~~~ilG~~fl~~~y~vfD~~~~~igfa~~~ 442 (445)
..+|+|+|+| +|..++|||++|+.+.. ....|+ +|++.+. .+.||||+.|||++|+|||++++|||||+++
T Consensus 376 -~~lP~~~f~f-~g~~~~L~p~~yi~~~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 376 -TKLPTLEFRS-PNKVYTLEPEYYLQPIEDIGSALCMLNIIPIDLEKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred -CCCCeEEEEE-CCEEEEECHHHheeccccCCCcEEEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 5689999999 78999999999998642 234798 7887652 3579999999999999999999999999986
No 16
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=1e-52 Score=419.70 Aligned_cols=307 Identities=22% Similarity=0.369 Sum_probs=245.9
Q ss_pred CceeecceecccCccccEEEEEEeCCCCceEEEEEEcCCCeeeeccCCCCCC-CCCCCCccCCCCCCCcCCCCCCccccc
Q 046757 64 SAIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGP-SCTKKGTIAGSRRRVFKADLSSSFKTI 142 (445)
Q Consensus 64 ~~~~~pl~~~~~~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~~c~~-~C~~~~~~~~~~~~~f~p~~Sst~~~~ 142 (445)
....+||.+..+ .+|+++|.||||+|++.|+|||||+++||+|. .|.. .|..+ +.|||++|+|++..
T Consensus 125 ~~~~~~l~d~~n---~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~-~C~~~~C~~~--------~~yd~s~SsT~~~~ 192 (450)
T PTZ00013 125 ENDVIELDDVAN---IMFYGEGEVGDNHQKFMLIFDTGSANLWVPSK-KCDSIGCSIK--------NLYDSSKSKSYEKD 192 (450)
T ss_pred CCCceeeeccCC---CEEEEEEEECCCCeEEEEEEeCCCCceEEecc-cCCccccccC--------CCccCccCcccccC
Confidence 344577776543 79999999999999999999999999999998 5653 57766 89999999999875
Q ss_pred CCCCccchhhhhcccCCCCCCCCCCCCeeeeEeCCCCeEeEEEEEEEEEeeeCCCCceeeeeeEeeeeeccCCC--CC--
Q 046757 143 PCSSDMCKSEFARLFSLTFCPTPTSPCAYDYRYADGSAAKGIFGKERVTIGLENGGKTRIEEVVMGCSDTIQGQ--IF-- 218 (445)
Q Consensus 143 ~c~~~~C~~~~~~~~~~~~c~~~~~~~~~~~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~v~~~~fG~~~~~~~~--~~-- 218 (445)
. |.|.+.|++|+ +.|.+++|+|+|+ ++.++ +.|+++....+. .+
T Consensus 193 ~-------------------------~~~~i~YG~Gs-v~G~~~~Dtv~iG-----~~~~~-~~f~~~~~~~~~~~~~~~ 240 (450)
T PTZ00013 193 G-------------------------TKVDITYGSGT-VKGFFSKDLVTLG-----HLSMP-YKFIEVTDTDDLEPIYSS 240 (450)
T ss_pred C-------------------------cEEEEEECCce-EEEEEEEEEEEEC-----CEEEc-cEEEEEEeccccccceec
Confidence 4 68999999998 9999999999999 67777 578887665321 12
Q ss_pred CCCceEEecCCCCC------chhhhhhcCcCCCCCceEEeccCCCCCCCCcceEEECCCC---CCCCeeeeeeecCCCCC
Q 046757 219 AEADGVLGLSYDKY------SFAQKVTNGSTFARGKFAYCLVDHLSHKNVSNYLIFGEES---KRMRMRMRYTLLGLIGP 289 (445)
Q Consensus 219 ~~~~GilGLg~~~~------s~~~~l~~~~~i~~~~FS~~l~~~~~~~~~~g~l~fGg~d---~~~~~~~~pl~~~~~~~ 289 (445)
..++||||||++.. +++.+|++++.|+.++||+||++. ....|.|+|||+| +.|++.|+|+. ...
T Consensus 241 ~~~dGIlGLg~~~~s~~~~~p~~~~L~~qg~I~~~vFS~~L~~~---~~~~G~L~fGGiD~~~y~G~L~y~pv~---~~~ 314 (450)
T PTZ00013 241 SEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVH---DVHAGYLTIGGIEEKFYEGNITYEKLN---HDL 314 (450)
T ss_pred ccccceecccCCccccccCCCHHHHHHhccCcCCcEEEEEecCC---CCCCCEEEECCcCccccccceEEEEcC---cCc
Confidence 36899999999765 367789999999989999999754 2347999999998 67999999997 467
Q ss_pred CeeEEEeeEEECCEEeecCCcccccCCCCcEEEccccceeeechhhHHHHHHHHHHHhhccccCCCCCCcccccccCCCC
Q 046757 290 DYGVSVKGISIGGVMLNIPSQVWDFNRGGGTAFDSGTTLTFLAEPAYKPVVAALEMSLSRYQRLKRDAPFEYCFNSTGFD 369 (445)
Q Consensus 290 ~y~v~l~~i~vg~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~ 369 (445)
+|.|.++ +.+|.... ....+||||||+++++|+++++++.+++.... .+ ... .+..+|+.
T Consensus 315 yW~I~l~-v~~G~~~~----------~~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~--~~-~~~-~y~~~C~~----- 374 (450)
T PTZ00013 315 YWQIDLD-VHFGKQTM----------QKANVIVDSGTTTITAPSEFLNKFFANLNVIK--VP-FLP-FYVTTCDN----- 374 (450)
T ss_pred eEEEEEE-EEECceec----------cccceEECCCCccccCCHHHHHHHHHHhCCee--cC-CCC-eEEeecCC-----
Confidence 9999998 67765432 24569999999999999998888877763210 10 111 13445642
Q ss_pred ccccCeEEEEEcCCCEEEeCCCceEEEe--CCceEEE-EEEeCCC-CCceeechhhhceeEEEEeCCCCEEEEeeCC
Q 046757 370 ESSVPKLVFHFADGARFEPHTKSYIIRV--AHGIRCL-GFVSATW-PGASAIGNIMQQNYFWEFDLLKDRLGFAPST 442 (445)
Q Consensus 370 ~~~~P~l~f~f~gg~~~~l~~~~yi~~~--~~~~~C~-~~~~~~~-~~~~ilG~~fl~~~y~vfD~~~~~igfa~~~ 442 (445)
..+|+|+|+| +|..++|+|++|+.+. .++..|+ ++++.+. .+.||||++|||++|+|||++++|||||+++
T Consensus 375 -~~lP~i~F~~-~g~~~~L~p~~Yi~~~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 375 -KEMPTLEFKS-ANNTYTLEPEYYMNPLLDVDDTLCMITMLPVDIDDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred -CCCCeEEEEE-CCEEEEECHHHheehhccCCCCeeEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 5689999999 7899999999999753 2345798 8877542 3579999999999999999999999999985
No 17
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=4.1e-52 Score=395.57 Aligned_cols=263 Identities=27% Similarity=0.568 Sum_probs=220.3
Q ss_pred ccEEEEEEeCCCCceEEEEEEcCCCeeeeccCCCCCCCCCCCCccCCCCCCCcCCCCCCcccccCCCCccchhhhhcccC
Q 046757 79 GMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKADLSSSFKTIPCSSDMCKSEFARLFS 158 (445)
Q Consensus 79 ~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~~c~~~C~~~~~~~~~~~~~f~p~~Sst~~~~~c~~~~C~~~~~~~~~ 158 (445)
++|+++|.||||+|++.|++||||+++||+|..+|.. |
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~-c----------------------------------------- 38 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTG-C----------------------------------------- 38 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCC-C-----------------------------------------
Confidence 4699999999999999999999999999998534432 2
Q ss_pred CCCCCCCCCCCeeeeEeCCCCeEeEEEEEEEEEeeeCCCCceeeeeeEeeeeeccCCCCC---CCCceEEecCCCCCchh
Q 046757 159 LTFCPTPTSPCAYDYRYADGSAAKGIFGKERVTIGLENGGKTRIEEVVMGCSDTIQGQIF---AEADGVLGLSYDKYSFA 235 (445)
Q Consensus 159 ~~~c~~~~~~~~~~~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~v~~~~fG~~~~~~~~~~---~~~~GilGLg~~~~s~~ 235 (445)
.|.|.+.|+|++.+.|.+++|+|+|+...+ ...++++.|||+....+... ...+||||||++..+++
T Consensus 39 ---------~c~~~i~Ygd~~~~~G~~~~D~v~~~~~~~-~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~ 108 (273)
T cd05475 39 ---------QCDYEIEYADGGSSMGVLVTDIFSLKLTNG-SRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLP 108 (273)
T ss_pred ---------cCccEeEeCCCCceEEEEEEEEEEEeecCC-CcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHH
Confidence 167999999887899999999999975332 35678999999987654221 46899999999999999
Q ss_pred hhhhcCcCCCCCceEEeccCCCCCCCCcceEEECCCC-CCCCeeeeeeecCCCCCCeeEEEeeEEECCEEeecCCccccc
Q 046757 236 QKVTNGSTFARGKFAYCLVDHLSHKNVSNYLIFGEES-KRMRMRMRYTLLGLIGPDYGVSVKGISIGGVMLNIPSQVWDF 314 (445)
Q Consensus 236 ~~l~~~~~i~~~~FS~~l~~~~~~~~~~g~l~fGg~d-~~~~~~~~pl~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~ 314 (445)
+||.+++.| +++||+||.+ ...|.|+||+.. +.+++.|+|+..++...+|.|++.+|+|+++...
T Consensus 109 ~ql~~~~~i-~~~Fs~~l~~-----~~~g~l~~G~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~-------- 174 (273)
T cd05475 109 SQLASQGII-KNVIGHCLSS-----NGGGFLFFGDDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTG-------- 174 (273)
T ss_pred HHHHhcCCc-CceEEEEccC-----CCCeEEEECCCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEECc--------
Confidence 999999999 6999999974 346999999765 5688999999864334799999999999998543
Q ss_pred CCCCcEEEccccceeeechhhHHHHHHHHHHHhhccccCCCCCCcccccccCCCCccccCeEEEEEcCC---CEEEeCCC
Q 046757 315 NRGGGTAFDSGTTLTFLAEPAYKPVVAALEMSLSRYQRLKRDAPFEYCFNSTGFDESSVPKLVFHFADG---ARFEPHTK 391 (445)
Q Consensus 315 ~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~l~f~f~gg---~~~~l~~~ 391 (445)
.....+||||||++++||+++| +|+|+|+|+++ ++++||++
T Consensus 175 ~~~~~~ivDTGTt~t~lp~~~y------------------------------------~p~i~~~f~~~~~~~~~~l~~~ 218 (273)
T cd05475 175 GKGLEVVFDSGSSYTYFNAQAY------------------------------------FKPLTLKFGKGWRTRLLEIPPE 218 (273)
T ss_pred CCCceEEEECCCceEEcCCccc------------------------------------cccEEEEECCCCceeEEEeCCC
Confidence 3456799999999999999865 58999999443 79999999
Q ss_pred ceEEEeCCceEEEEEEeCC---CCCceeechhhhceeEEEEeCCCCEEEEeeCCC
Q 046757 392 SYIIRVAHGIRCLGFVSAT---WPGASAIGNIMQQNYFWEFDLLKDRLGFAPSTC 443 (445)
Q Consensus 392 ~yi~~~~~~~~C~~~~~~~---~~~~~ilG~~fl~~~y~vfD~~~~~igfa~~~C 443 (445)
+|++...++..|+++.... ..+.||||+.|||++|+|||++++|||||+++|
T Consensus 219 ~y~~~~~~~~~Cl~~~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 219 NYLIISEKGNVCLGILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred ceEEEcCCCCEEEEEecCCCcCCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 9999766667899776543 124799999999999999999999999999999
No 18
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=3e-52 Score=412.72 Aligned_cols=319 Identities=21% Similarity=0.320 Sum_probs=240.7
Q ss_pred ccEEEEEEeCCCCceEEEEEEcCCCeeeeccCCCCCCCCCCCCccCCCCCCCcCCCCCCcccccCCCCccchhhhhcccC
Q 046757 79 GMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKADLSSSFKTIPCSSDMCKSEFARLFS 158 (445)
Q Consensus 79 ~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~~c~~~C~~~~~~~~~~~~~f~p~~Sst~~~~~c~~~~C~~~~~~~~~ 158 (445)
..|+++|.||||+|++.|+|||||+++||+|. +| |..+ +.|||++|+|++...
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~-~~---~~~~--------~~f~~~~SsT~~~~~--------------- 54 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAA-PH---PFIH--------TYFHRELSSTYRDLG--------------- 54 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcC-CC---cccc--------ccCCchhCcCcccCC---------------
Confidence 36999999999999999999999999999998 44 2223 789999999998765
Q ss_pred CCCCCCCCCCCeeeeEeCCCCeEeEEEEEEEEEeeeCCCCceeeeeeEeeeeeccCCCCC--CCCceEEecCCCCC----
Q 046757 159 LTFCPTPTSPCAYDYRYADGSAAKGIFGKERVTIGLENGGKTRIEEVVMGCSDTIQGQIF--AEADGVLGLSYDKY---- 232 (445)
Q Consensus 159 ~~~c~~~~~~~~~~~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~v~~~~fG~~~~~~~~~~--~~~~GilGLg~~~~---- 232 (445)
|.|.+.|++|+ +.|.+++|+|+|++.. ...+. +.|++.....+... ...+||||||++.+
T Consensus 55 ----------~~~~i~Yg~Gs-~~G~~~~D~v~ig~~~--~~~~~-~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~ 120 (364)
T cd05473 55 ----------KGVTVPYTQGS-WEGELGTDLVSIPKGP--NVTFR-ANIAAITESENFFLNGSNWEGILGLAYAELARPD 120 (364)
T ss_pred ----------ceEEEEECcce-EEEEEEEEEEEECCCC--ccceE-EeeEEEeccccceecccccceeeeecccccccCC
Confidence 68999999998 8999999999998411 12221 33455554443111 25799999999765
Q ss_pred ----chhhhhhcCcCCCCCceEEeccCCC----C--CCCCcceEEECCCC---CCCCeeeeeeecCCCCCCeeEEEeeEE
Q 046757 233 ----SFAQKVTNGSTFARGKFAYCLVDHL----S--HKNVSNYLIFGEES---KRMRMRMRYTLLGLIGPDYGVSVKGIS 299 (445)
Q Consensus 233 ----s~~~~l~~~~~i~~~~FS~~l~~~~----~--~~~~~g~l~fGg~d---~~~~~~~~pl~~~~~~~~y~v~l~~i~ 299 (445)
++..+|++++.+. ++||+||.... . .....|.|+|||+| +.+++.|+|++ ...+|.|.|++|+
T Consensus 121 ~~~~~~~~~l~~q~~~~-~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~---~~~~~~v~l~~i~ 196 (364)
T cd05473 121 SSVEPFFDSLVKQTGIP-DVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIR---EEWYYEVIILKLE 196 (364)
T ss_pred CCCCCHHHHHHhccCCc-cceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecC---cceeEEEEEEEEE
Confidence 3566888888885 89999885311 0 12347999999998 67899999998 3679999999999
Q ss_pred ECCEEeecCCcccccCCCCcEEEccccceeeechhhHHHHHHHHHHHhhcc--ccCCCCCCcccccccCCCCccccCeEE
Q 046757 300 IGGVMLNIPSQVWDFNRGGGTAFDSGTTLTFLAEPAYKPVVAALEMSLSRY--QRLKRDAPFEYCFNSTGFDESSVPKLV 377 (445)
Q Consensus 300 vg~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~C~~~~~~~~~~~P~l~ 377 (445)
|+++.+.++...+ ....+||||||++++||+++|++|++++.++.... +..........|+.........+|+|+
T Consensus 197 vg~~~~~~~~~~~---~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~ 273 (364)
T cd05473 197 VGGQSLNLDCKEY---NYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPDGFWLGSQLACWQKGTTPWEIFPKIS 273 (364)
T ss_pred ECCEecccccccc---cCccEEEeCCCcceeCCHHHHHHHHHHHHhhcccccCCccccCcceeecccccCchHhhCCcEE
Confidence 9999886543322 12469999999999999999999999998764311 111001123578765432234689999
Q ss_pred EEEcCC-----CEEEeCCCceEEEeC---CceEEEEEEeCCCCCceeechhhhceeEEEEeCCCCEEEEeeCCCCC
Q 046757 378 FHFADG-----ARFEPHTKSYIIRVA---HGIRCLGFVSATWPGASAIGNIMQQNYFWEFDLLKDRLGFAPSTCAT 445 (445)
Q Consensus 378 f~f~gg-----~~~~l~~~~yi~~~~---~~~~C~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfa~~~C~~ 445 (445)
|+|+++ ..+.||+++|+.+.. ....|+++......+.||||+.|||++|+|||++++|||||+++|..
T Consensus 274 ~~f~g~~~~~~~~l~l~p~~Y~~~~~~~~~~~~C~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~~ 349 (364)
T cd05473 274 IYLRDENSSQSFRITILPQLYLRPVEDHGTQLDCYKFAISQSTNGTVIGAVIMEGFYVVFDRANKRVGFAVSTCAE 349 (364)
T ss_pred EEEccCCCCceEEEEECHHHhhhhhccCCCcceeeEEeeecCCCceEEeeeeEcceEEEEECCCCEEeeEeccccc
Confidence 999542 378999999998642 23579855433323579999999999999999999999999999963
No 19
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=1.4e-50 Score=383.62 Aligned_cols=258 Identities=41% Similarity=0.775 Sum_probs=221.5
Q ss_pred cEEEEEEeCCCCceEEEEEEcCCCeeeeccCCCCCCCCCCCCccCCCCCCCcCCCCCCcccccCCCCccchhhhhcccCC
Q 046757 80 MYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKADLSSSFKTIPCSSDMCKSEFARLFSL 159 (445)
Q Consensus 80 ~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~~c~~~C~~~~~~~~~~~~~f~p~~Sst~~~~~c~~~~C~~~~~~~~~~ 159 (445)
+|+++|.||||+|++.|+|||||+++||+| |
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~---~---------------------------------------------- 31 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC---C---------------------------------------------- 31 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC---C----------------------------------------------
Confidence 599999999999999999999999999975 1
Q ss_pred CCCCCCCCCCeeeeEeCCCCeEeEEEEEEEEEeeeCCCCce--eeeeeEeeeeeccCCCCCCCCceEEecCCCCCchhhh
Q 046757 160 TFCPTPTSPCAYDYRYADGSAAKGIFGKERVTIGLENGGKT--RIEEVVMGCSDTIQGQIFAEADGVLGLSYDKYSFAQK 237 (445)
Q Consensus 160 ~~c~~~~~~~~~~~~Y~~gs~~~G~~~~D~v~i~~~~~~~~--~v~~~~fG~~~~~~~~~~~~~~GilGLg~~~~s~~~~ 237 (445)
.|.+.|++|+.+.|.+++|+|+|+ +. .++++.|||+....+......+||||||+...|+++|
T Consensus 32 ----------~~~~~Y~dg~~~~G~~~~D~v~~g-----~~~~~~~~~~Fg~~~~~~~~~~~~~~GIlGLg~~~~s~~~q 96 (265)
T cd05476 32 ----------SYEYSYGDGSSTSGVLATETFTFG-----DSSVSVPNVAFGCGTDNEGGSFGGADGILGLGRGPLSLVSQ 96 (265)
T ss_pred ----------ceEeEeCCCceeeeeEEEEEEEec-----CCCCccCCEEEEecccccCCccCCCCEEEECCCCcccHHHH
Confidence 467899988889999999999999 45 7899999999988651226789999999999999999
Q ss_pred hhcCcCCCCCceEEeccCCCCCCCCcceEEECCCC--CCCCeeeeeeecCC-CCCCeeEEEeeEEECCEEeecCCcccc-
Q 046757 238 VTNGSTFARGKFAYCLVDHLSHKNVSNYLIFGEES--KRMRMRMRYTLLGL-IGPDYGVSVKGISIGGVMLNIPSQVWD- 313 (445)
Q Consensus 238 l~~~~~i~~~~FS~~l~~~~~~~~~~g~l~fGg~d--~~~~~~~~pl~~~~-~~~~y~v~l~~i~vg~~~~~~~~~~~~- 313 (445)
|..++ ++||+||.+.. .....|.|+||++| +.+++.|+|++.++ ...+|.|+|++|+|+++.+.++...+.
T Consensus 97 l~~~~----~~Fs~~l~~~~-~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~ 171 (265)
T cd05476 97 LGSTG----NKFSYCLVPHD-DTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAI 171 (265)
T ss_pred hhccc----CeeEEEccCCC-CCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhccc
Confidence 96665 79999998642 12457999999998 46999999999653 357999999999999998875443321
Q ss_pred -cCCCCcEEEccccceeeechhhHHHHHHHHHHHhhccccCCCCCCcccccccCCCCccccCeEEEEEcCCCEEEeCCCc
Q 046757 314 -FNRGGGTAFDSGTTLTFLAEPAYKPVVAALEMSLSRYQRLKRDAPFEYCFNSTGFDESSVPKLVFHFADGARFEPHTKS 392 (445)
Q Consensus 314 -~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~l~f~f~gg~~~~l~~~~ 392 (445)
......+||||||++++||+++| |+|+|+|++|+++.|++++
T Consensus 172 ~~~~~~~ai~DTGTs~~~lp~~~~-------------------------------------P~i~~~f~~~~~~~i~~~~ 214 (265)
T cd05476 172 DSDGSGGTIIDSGTTLTYLPDPAY-------------------------------------PDLTLHFDGGADLELPPEN 214 (265)
T ss_pred ccCCCCcEEEeCCCcceEcCcccc-------------------------------------CCEEEEECCCCEEEeCccc
Confidence 14567899999999999999865 8899999558999999999
Q ss_pred eEEEeCCceEEEEEEeCCCCCceeechhhhceeEEEEeCCCCEEEEeeCCC
Q 046757 393 YIIRVAHGIRCLGFVSATWPGASAIGNIMQQNYFWEFDLLKDRLGFAPSTC 443 (445)
Q Consensus 393 yi~~~~~~~~C~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfa~~~C 443 (445)
|+++...+..|+++......+.+|||++|||++|++||++++|||||+++|
T Consensus 215 y~~~~~~~~~C~~~~~~~~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 215 YFVDVGEGVVCLAILSSSSGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred EEEECCCCCEEEEEecCCCCCcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 999766677999888764456899999999999999999999999999999
No 20
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=3.4e-49 Score=376.98 Aligned_cols=264 Identities=23% Similarity=0.365 Sum_probs=215.2
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCeeeeccCCCCCCCCCCCCccCCCCCCCcCCCCCCcccccCCCCccchhhhhcccCCC
Q 046757 81 YFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKADLSSSFKTIPCSSDMCKSEFARLFSLT 160 (445)
Q Consensus 81 Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~~c~~~C~~~~~~~~~~~~~f~p~~Sst~~~~~c~~~~C~~~~~~~~~~~ 160 (445)
|+++|.||||+|++.|+|||||+++||+|. .|.. |..+ ..+.|||++|+|++...
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~-~c~~-~~~~------~~~~y~~~~Sst~~~~~----------------- 55 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSS-ETPA-AQQG------GHKLYDPSKSSTAKLLP----------------- 55 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeC-CCCc-hhhc------cCCcCCCccCccceecC-----------------
Confidence 789999999999999999999999999999 5654 5433 34789999999988643
Q ss_pred CCCCCCCCCeeeeEeCCCCeEeEEEEEEEEEeeeCCCCceeeeeeEeeeeeccCCCCC--CCCceEEecCCCCCc-----
Q 046757 161 FCPTPTSPCAYDYRYADGSAAKGIFGKERVTIGLENGGKTRIEEVVMGCSDTIQGQIF--AEADGVLGLSYDKYS----- 233 (445)
Q Consensus 161 ~c~~~~~~~~~~~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~v~~~~fG~~~~~~~~~~--~~~~GilGLg~~~~s----- 233 (445)
.|.|.+.|++|+.+.|.+++|+|+|+ +..++++.||+++...+..+ ...+||||||++..+
T Consensus 56 -------~~~~~i~Y~~G~~~~G~~~~D~v~ig-----~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~ 123 (278)
T cd06097 56 -------GATWSISYGDGSSASGIVYTDTVSIG-----GVEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPP 123 (278)
T ss_pred -------CcEEEEEeCCCCeEEEEEEEEEEEEC-----CEEECCeEEEEEeecCccccccccccceeeeccccccccccC
Confidence 26899999999879999999999999 78899999999998755333 579999999997653
Q ss_pred ----hhhhhhcCcCCCCCceEEeccCCCCCCCCcceEEECCCC---CCCCeeeeeeecCCCCCCeeEEEeeEEECCEEee
Q 046757 234 ----FAQKVTNGSTFARGKFAYCLVDHLSHKNVSNYLIFGEES---KRMRMRMRYTLLGLIGPDYGVSVKGISIGGVMLN 306 (445)
Q Consensus 234 ----~~~~l~~~~~i~~~~FS~~l~~~~~~~~~~g~l~fGg~d---~~~~~~~~pl~~~~~~~~y~v~l~~i~vg~~~~~ 306 (445)
+.++|.+++. ++.||+||.+ ...|+|+|||+| +.|+++|+|+.. ...+|.|.+++|+|+++...
T Consensus 124 ~~~~~~~~l~~~~~--~~~Fs~~l~~-----~~~G~l~fGg~D~~~~~g~l~~~pi~~--~~~~w~v~l~~i~v~~~~~~ 194 (278)
T cd06097 124 KQKTFFENALSSLD--APLFTADLRK-----AAPGFYTFGYIDESKYKGEISWTPVDN--SSGFWQFTSTSYTVGGDAPW 194 (278)
T ss_pred CCCCHHHHHHHhcc--CceEEEEecC-----CCCcEEEEeccChHHcCCceEEEEccC--CCcEEEEEEeeEEECCccee
Confidence 4556766654 5999999974 347999999998 779999999984 25799999999999987432
Q ss_pred cCCcccccCCCCcEEEccccceeeechhhHHHHHHHHHHHhhccccCCCCCCcccccccCCCCccccCeEEEEEcCCCEE
Q 046757 307 IPSQVWDFNRGGGTAFDSGTTLTFLAEPAYKPVVAALEMSLSRYQRLKRDAPFEYCFNSTGFDESSVPKLVFHFADGARF 386 (445)
Q Consensus 307 ~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~l~f~f~gg~~~ 386 (445)
. ..+..+||||||+++++|.++++++.+++... ... ....+|.++|.. .+|+|+|+|
T Consensus 195 ~-------~~~~~~iiDSGTs~~~lP~~~~~~l~~~l~g~-------~~~-~~~~~~~~~C~~--~~P~i~f~~------ 251 (278)
T cd06097 195 S-------RSGFSAIADTGTTLILLPDAIVEAYYSQVPGA-------YYD-SEYGGWVFPCDT--TLPDLSFAV------ 251 (278)
T ss_pred e-------cCCceEEeecCCchhcCCHHHHHHHHHhCcCC-------ccc-CCCCEEEEECCC--CCCCEEEEE------
Confidence 1 34677999999999999999888887776211 001 122345566653 389999999
Q ss_pred EeCCCceEEEeCCceEEEEEEeCCCCCceeechhhhceeEEEEeCCCCEEEEee
Q 046757 387 EPHTKSYIIRVAHGIRCLGFVSATWPGASAIGNIMQQNYFWEFDLLKDRLGFAP 440 (445)
Q Consensus 387 ~l~~~~yi~~~~~~~~C~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfa~ 440 (445)
.||||++|||++|+|||++++|||||+
T Consensus 252 ---------------------------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 ---------------------------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred ---------------------------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 599999999999999999999999996
No 21
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=9.3e-50 Score=388.39 Aligned_cols=297 Identities=26% Similarity=0.493 Sum_probs=248.3
Q ss_pred cEEEEEEeCCCCceEEEEEEcCCCeeeeccCCCCCCC--CCCCCccCCCCCCCcCCCCCCcccccCCCCccchhhhhccc
Q 046757 80 MYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPS--CTKKGTIAGSRRRVFKADLSSSFKTIPCSSDMCKSEFARLF 157 (445)
Q Consensus 80 ~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~~c~~~--C~~~~~~~~~~~~~f~p~~Sst~~~~~c~~~~C~~~~~~~~ 157 (445)
+|+++|.||||+|++.|++||||+++||++. .|... |... ..|++.+|+|++...
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~-~c~~~~~~~~~--------~~y~~~~S~t~~~~~-------------- 57 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSS-NCNSCSSCASS--------GFYNPSKSSTFSNQG-------------- 57 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBT-TECSHTHHCTS--------C-BBGGGSTTEEEEE--------------
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeecee-ccccccccccc--------cccccccccccccce--------------
Confidence 5999999999999999999999999999988 56542 4444 899999999988764
Q ss_pred CCCCCCCCCCCCeeeeEeCCCCeEeEEEEEEEEEeeeCCCCceeeeeeEeeeeeccCCCCC--CCCceEEecCCCC----
Q 046757 158 SLTFCPTPTSPCAYDYRYADGSAAKGIFGKERVTIGLENGGKTRIEEVVMGCSDTIQGQIF--AEADGVLGLSYDK---- 231 (445)
Q Consensus 158 ~~~~c~~~~~~~~~~~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~v~~~~fG~~~~~~~~~~--~~~~GilGLg~~~---- 231 (445)
+.+.+.|++|+ +.|.+++|+|+|+ ++.++++.||++....+..+ ...+||||||++.
T Consensus 58 -----------~~~~~~y~~g~-~~G~~~~D~v~ig-----~~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~ 120 (317)
T PF00026_consen 58 -----------KPFSISYGDGS-VSGNLVSDTVSIG-----GLTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSS 120 (317)
T ss_dssp -----------EEEEEEETTEE-EEEEEEEEEEEET-----TEEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGG
T ss_pred -----------eeeeeeccCcc-cccccccceEeee-----eccccccceeccccccccccccccccccccccCCccccc
Confidence 47899999999 9999999999999 78999999999999654322 6799999999743
Q ss_pred ---CchhhhhhcCcCCCCCceEEeccCCCCCCCCcceEEECCCC---CCCCeeeeeeecCCCCCCeeEEEeeEEECCEEe
Q 046757 232 ---YSFAQKVTNGSTFARGKFAYCLVDHLSHKNVSNYLIFGEES---KRMRMRMRYTLLGLIGPDYGVSVKGISIGGVML 305 (445)
Q Consensus 232 ---~s~~~~l~~~~~i~~~~FS~~l~~~~~~~~~~g~l~fGg~d---~~~~~~~~pl~~~~~~~~y~v~l~~i~vg~~~~ 305 (445)
.+++.+|++++.|.+++||++|.+.. ...|.|+|||+| +.+++.|+|+. ...+|.|.+++|.+++...
T Consensus 121 ~~~~~~~~~l~~~g~i~~~~fsl~l~~~~---~~~g~l~~Gg~d~~~~~g~~~~~~~~---~~~~w~v~~~~i~i~~~~~ 194 (317)
T PF00026_consen 121 STYPTFLDQLVQQGLISSNVFSLYLNPSD---SQNGSLTFGGYDPSKYDGDLVWVPLV---SSGYWSVPLDSISIGGESV 194 (317)
T ss_dssp GTS-SHHHHHHHTTSSSSSEEEEEEESTT---SSEEEEEESSEEGGGEESEEEEEEBS---STTTTEEEEEEEEETTEEE
T ss_pred ccCCcceecchhhccccccccceeeeecc---cccchheeeccccccccCceeccCcc---ccccccccccccccccccc
Confidence 46889999999999999999998763 467999999998 67899999999 5789999999999999832
Q ss_pred ecCCcccccCCCCcEEEccccceeeechhhHHHHHHHHHHHhhccccCCCCCCcccccccCCCCccccCeEEEEEcCCCE
Q 046757 306 NIPSQVWDFNRGGGTAFDSGTTLTFLAEPAYKPVVAALEMSLSRYQRLKRDAPFEYCFNSTGFDESSVPKLVFHFADGAR 385 (445)
Q Consensus 306 ~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~l~f~f~gg~~ 385 (445)
.. .....++||||+++++||.+++++|++++...... .+|.++|.....+|.|+|+| ++.+
T Consensus 195 ~~-------~~~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~~-----------~~~~~~c~~~~~~p~l~f~~-~~~~ 255 (317)
T PF00026_consen 195 FS-------SSGQQAILDTGTSYIYLPRSIFDAIIKALGGSYSD-----------GVYSVPCNSTDSLPDLTFTF-GGVT 255 (317)
T ss_dssp EE-------EEEEEEEEETTBSSEEEEHHHHHHHHHHHTTEEEC-----------SEEEEETTGGGGSEEEEEEE-TTEE
T ss_pred cc-------ccceeeecccccccccccchhhHHHHhhhcccccc-----------eeEEEecccccccceEEEee-CCEE
Confidence 21 23345999999999999999998888888433211 34555666567789999999 7999
Q ss_pred EEeCCCceEEEeCCc--eEEE-EEEe---CCCCCceeechhhhceeEEEEeCCCCEEEEeeC
Q 046757 386 FEPHTKSYIIRVAHG--IRCL-GFVS---ATWPGASAIGNIMQQNYFWEFDLLKDRLGFAPS 441 (445)
Q Consensus 386 ~~l~~~~yi~~~~~~--~~C~-~~~~---~~~~~~~ilG~~fl~~~y~vfD~~~~~igfa~~ 441 (445)
++||+++|+.+.... ..|+ +|.. ......+|||.+|||++|++||.+++|||||+|
T Consensus 256 ~~i~~~~~~~~~~~~~~~~C~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 256 FTIPPSDYIFKIEDGNGGYCYLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp EEEEHHHHEEEESSTTSSEEEESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred EEecchHhcccccccccceeEeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 999999999987543 3797 8887 334568999999999999999999999999986
No 22
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=6.8e-49 Score=378.51 Aligned_cols=272 Identities=21% Similarity=0.381 Sum_probs=228.1
Q ss_pred cEEEEEEeCCCCceEEEEEEcCCCeeeeccCCCCCCCCCCCCccCCCCCCCcCCCCCCcccccCCCCccchhhhhcccCC
Q 046757 80 MYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKADLSSSFKTIPCSSDMCKSEFARLFSL 159 (445)
Q Consensus 80 ~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~~c~~~C~~~~~~~~~~~~~f~p~~Sst~~~~~c~~~~C~~~~~~~~~~ 159 (445)
.|+++|.||||+|++.|++||||+++||+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~--------------------------------------------------- 30 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP--------------------------------------------------- 30 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee---------------------------------------------------
Confidence 59999999999999999999999999996
Q ss_pred CCCCCCCCCCeeeeEeCCCCeEeEEEEEEEEEeeeCCCCceeeeeeEeeeeeccCCCCCCCCceEEecCCCCC-------
Q 046757 160 TFCPTPTSPCAYDYRYADGSAAKGIFGKERVTIGLENGGKTRIEEVVMGCSDTIQGQIFAEADGVLGLSYDKY------- 232 (445)
Q Consensus 160 ~~c~~~~~~~~~~~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~v~~~~fG~~~~~~~~~~~~~~GilGLg~~~~------- 232 (445)
.|.+.|++|+.+.|.+++|+|+|+ +..++++.|||++... ..+||||||+...
T Consensus 31 ----------~~~~~Y~~g~~~~G~~~~D~v~~g-----~~~~~~~~fg~~~~~~-----~~~GilGLg~~~~~~~~~~~ 90 (295)
T cd05474 31 ----------DFSISYGDGTSASGTWGTDTVSIG-----GATVKNLQFAVANSTS-----SDVGVLGIGLPGNEATYGTG 90 (295)
T ss_pred ----------eeEEEeccCCcEEEEEEEEEEEEC-----CeEecceEEEEEecCC-----CCcceeeECCCCCcccccCC
Confidence 145789997779999999999998 6789999999999853 4799999999876
Q ss_pred ----chhhhhhcCcCCCCCceEEeccCCCCCCCCcceEEECCCC---CCCCeeeeeeecCCC---CCCeeEEEeeEEECC
Q 046757 233 ----SFAQKVTNGSTFARGKFAYCLVDHLSHKNVSNYLIFGEES---KRMRMRMRYTLLGLI---GPDYGVSVKGISIGG 302 (445)
Q Consensus 233 ----s~~~~l~~~~~i~~~~FS~~l~~~~~~~~~~g~l~fGg~d---~~~~~~~~pl~~~~~---~~~y~v~l~~i~vg~ 302 (445)
+++.+|++++.|+++.||+||.+. ....|.|+|||+| +.+++.|+|+..+.. ..+|.|.+++|+|++
T Consensus 91 ~~~~s~~~~L~~~g~i~~~~Fsl~l~~~---~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~ 167 (295)
T cd05474 91 YTYPNFPIALKKQGLIKKNAYSLYLNDL---DASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNG 167 (295)
T ss_pred CcCCCHHHHHHHCCcccceEEEEEeCCC---CCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEc
Confidence 699999999999989999999864 2357999999998 568999999996531 278999999999999
Q ss_pred EEeecCCcccccCCCCcEEEccccceeeechhhHHHHHHHHHHHhhccccCCCCCCcccccccCCCCccccCeEEEEEcC
Q 046757 303 VMLNIPSQVWDFNRGGGTAFDSGTTLTFLAEPAYKPVVAALEMSLSRYQRLKRDAPFEYCFNSTGFDESSVPKLVFHFAD 382 (445)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~l~f~f~g 382 (445)
+.+..+.. .....++|||||++++||+++|++|.+++.+.... .. ..+..+|+. ... |+|+|+| +
T Consensus 168 ~~~~~~~~----~~~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~---~~-~~~~~~C~~-----~~~-p~i~f~f-~ 232 (295)
T cd05474 168 SSGNTTLL----SKNLPALLDSGTTLTYLPSDIVDAIAKQLGATYDS---DE-GLYVVDCDA-----KDD-GSLTFNF-G 232 (295)
T ss_pred CCCccccc----CCCccEEECCCCccEeCCHHHHHHHHHHhCCEEcC---CC-cEEEEeCCC-----CCC-CEEEEEE-C
Confidence 87643211 45678999999999999999999999988644321 11 124455654 344 9999999 7
Q ss_pred CCEEEeCCCceEEEeC----CceEEE-EEEeCCCCCceeechhhhceeEEEEeCCCCEEEEeeC
Q 046757 383 GARFEPHTKSYIIRVA----HGIRCL-GFVSATWPGASAIGNIMQQNYFWEFDLLKDRLGFAPS 441 (445)
Q Consensus 383 g~~~~l~~~~yi~~~~----~~~~C~-~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfa~~ 441 (445)
|++++||+++|+++.. .+..|+ +|++.+. +.||||++|||++|++||.+++|||||++
T Consensus 233 g~~~~i~~~~~~~~~~~~~~~~~~C~~~i~~~~~-~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 233 GATISVPLSDLVLPASTDDGGDGACYLGIQPSTS-DYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred CeEEEEEHHHhEeccccCCCCCCCeEEEEEeCCC-CcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 8999999999999764 256796 8988763 68999999999999999999999999986
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=1e-45 Score=354.07 Aligned_cols=271 Identities=29% Similarity=0.553 Sum_probs=224.8
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCeeeeccCCCCCCCCCCCCccCCCCCC--CcCCCCCCcccccCCCCccchhhhhcccC
Q 046757 81 YFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRR--VFKADLSSSFKTIPCSSDMCKSEFARLFS 158 (445)
Q Consensus 81 Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~~c~~~C~~~~~~~~~~~~--~f~p~~Sst~~~~~c~~~~C~~~~~~~~~ 158 (445)
|+++|.||||+|++.|+|||||+++||+|. .|.. |..+ ... .|++..|+++...
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~-~c~~-~~~~------~~~~~~~~~~~s~~~~~~---------------- 56 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSS-NCTS-CSCQ------KHPRFKYDSSKSSTYKDT---------------- 56 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecC-CCCc-cccc------cCCCCccCccCCceeecC----------------
Confidence 789999999999999999999999999999 6765 4333 112 2677777766543
Q ss_pred CCCCCCCCCCCeeeeEeCCCCeEeEEEEEEEEEeeeCCCCceeeeeeEeeeeeccCCCC-CCCCceEEecCCCC------
Q 046757 159 LTFCPTPTSPCAYDYRYADGSAAKGIFGKERVTIGLENGGKTRIEEVVMGCSDTIQGQI-FAEADGVLGLSYDK------ 231 (445)
Q Consensus 159 ~~~c~~~~~~~~~~~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~v~~~~fG~~~~~~~~~-~~~~~GilGLg~~~------ 231 (445)
.|.|.+.|++|+ +.|.+++|+|+|+ +..++++.|||++...+.. ....+||||||+..
T Consensus 57 ---------~~~~~~~Y~~g~-~~g~~~~D~v~~~-----~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~ 121 (283)
T cd05471 57 ---------GCTFSITYGDGS-VTGGLGTDTVTIG-----GLTIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGV 121 (283)
T ss_pred ---------CCEEEEEECCCe-EEEEEEEeEEEEC-----CEEEeceEEEEEeccCCcccccccceEeecCCcccccccC
Confidence 378999999987 9999999999999 5679999999999986511 26799999999988
Q ss_pred CchhhhhhcCcCCCCCceEEeccCCCCCCCCcceEEECCCC---CCCCeeeeeeecCCCCCCeeEEEeeEEECCEEeecC
Q 046757 232 YSFAQKVTNGSTFARGKFAYCLVDHLSHKNVSNYLIFGEES---KRMRMRMRYTLLGLIGPDYGVSVKGISIGGVMLNIP 308 (445)
Q Consensus 232 ~s~~~~l~~~~~i~~~~FS~~l~~~~~~~~~~g~l~fGg~d---~~~~~~~~pl~~~~~~~~y~v~l~~i~vg~~~~~~~ 308 (445)
.+++++|.+++.|.+++||+||.+.. .....|.|+||++| +.+++.|+|++.. ...+|.|.+++|.|++.....
T Consensus 122 ~s~~~~l~~~~~i~~~~Fs~~l~~~~-~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~-~~~~~~v~l~~i~v~~~~~~~- 198 (283)
T cd05471 122 PSFFDQLKSQGLISSPVFSFYLGRDG-DGGNGGELTFGGIDPSKYTGDLTYTPVVSN-GPGYWQVPLDGISVGGKSVIS- 198 (283)
T ss_pred CCHHHHHHHCCCCCCCEEEEEEcCCC-CCCCCCEEEEcccCccccCCceEEEecCCC-CCCEEEEEeCeEEECCceeee-
Confidence 78999999999999999999998642 12468999999998 4689999999953 267999999999999974111
Q ss_pred CcccccCCCCcEEEccccceeeechhhHHHHHHHHHHHhhccccCCCCCCcccccccCCCCccccCeEEEEEcCCCEEEe
Q 046757 309 SQVWDFNRGGGTAFDSGTTLTFLAEPAYKPVVAALEMSLSRYQRLKRDAPFEYCFNSTGFDESSVPKLVFHFADGARFEP 388 (445)
Q Consensus 309 ~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~l~f~f~gg~~~~l 388 (445)
......++|||||++++||+++|++|.+++.+.... ...|+...|.....+|+|+|+|
T Consensus 199 -----~~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~~---------~~~~~~~~~~~~~~~p~i~f~f-------- 256 (283)
T cd05471 199 -----SSGGGGAIVDSGTSLIYLPSSVYDAILKALGAAVSS---------SDGGYGVDCSPCDTLPDITFTF-------- 256 (283)
T ss_pred -----cCCCcEEEEecCCCCEeCCHHHHHHHHHHhCCcccc---------cCCcEEEeCcccCcCCCEEEEE--------
Confidence 145678999999999999999999999998654421 2345555666678899999999
Q ss_pred CCCceEEEeCCceEEEEEEeCCCCCceeechhhhceeEEEEeCCCCEEEEee
Q 046757 389 HTKSYIIRVAHGIRCLGFVSATWPGASAIGNIMQQNYFWEFDLLKDRLGFAP 440 (445)
Q Consensus 389 ~~~~yi~~~~~~~~C~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfa~ 440 (445)
.+|||++|||++|++||+++++||||+
T Consensus 257 -------------------------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 -------------------------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred -------------------------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 689999999999999999999999986
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.97 E-value=2.5e-31 Score=232.36 Aligned_cols=164 Identities=34% Similarity=0.776 Sum_probs=133.3
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCeeeeccCCCCCCCCCCCCccCCCCCCCcCCCCCCcccccCCCCccchhhhhcccCCC
Q 046757 81 YFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKADLSSSFKTIPCSSDMCKSEFARLFSLT 160 (445)
Q Consensus 81 Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~~c~~~C~~~~~~~~~~~~~f~p~~Sst~~~~~c~~~~C~~~~~~~~~~~ 160 (445)
|+++|.||||+|++.|+|||||+++|++|.. +.|+|.+|+||+.+.|.++.|..... ...
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C~~-----------------~~f~~~~Sst~~~v~C~s~~C~~~~~---~~~ 60 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQCPD-----------------PPFDPSKSSTYRPVPCSSPQCSSAPS---FCP 60 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET---------------------STT-TTSSBEC-BTTSHHHHHCTS---SBT
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcCCC-----------------cccCCccCCcccccCCCCcchhhccc---ccc
Confidence 8999999999999999999999999999831 79999999999999999999995322 133
Q ss_pred CCCCCCCCCeeeeEeCCCCeEeEEEEEEEEEeeeCCCCceeeeeeEeeeeeccCCCCCCCCceEEecCCCCCchhhhhhc
Q 046757 161 FCPTPTSPCAYDYRYADGSAAKGIFGKERVTIGLENGGKTRIEEVVMGCSDTIQGQIFAEADGVLGLSYDKYSFAQKVTN 240 (445)
Q Consensus 161 ~c~~~~~~~~~~~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~v~~~~fG~~~~~~~~~~~~~~GilGLg~~~~s~~~~l~~ 240 (445)
.|...++.|.|.+.|++++.+.|.+++|+|+++...+....+.++.|||++...+ .+...+||||||+..+||+.||.+
T Consensus 61 ~~~~~~~~C~y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g-~~~~~~GilGLg~~~~Sl~sQl~~ 139 (164)
T PF14543_consen 61 CCCCSNNSCPYSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSG-LFYGADGILGLGRGPLSLPSQLAS 139 (164)
T ss_dssp CCTCESSEEEEEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGT-SSTTEEEEEE-SSSTTSHHHHHHH
T ss_pred cCCCCcCcccceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeecccc-CCcCCCcccccCCCcccHHHHHHH
Confidence 5556667899999999999999999999999998655557889999999999986 556899999999999999999966
Q ss_pred CcCCCCCceEEeccCCCCCCCCcceEEECC
Q 046757 241 GSTFARGKFAYCLVDHLSHKNVSNYLIFGE 270 (445)
Q Consensus 241 ~~~i~~~~FS~~l~~~~~~~~~~g~l~fGg 270 (445)
+ ..++|||||.+ +.....|.|+||+
T Consensus 140 ~---~~~~FSyCL~~--~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 140 S---SGNKFSYCLPS--SSPSSSGFLSFGD 164 (164)
T ss_dssp H-----SEEEEEB-S---SSSSEEEEEECS
T ss_pred h---cCCeEEEECCC--CCCCCCEEEEeCc
Confidence 6 34999999998 2356789999996
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.95 E-value=4.6e-27 Score=205.35 Aligned_cols=151 Identities=40% Similarity=0.693 Sum_probs=122.1
Q ss_pred CeeEEEeeEEECCEEeecCCcccc-cCCCCcEEEccccceeeechhhHHHHHHHHHHHhhccc--c-CCCCCCccccccc
Q 046757 290 DYGVSVKGISIGGVMLNIPSQVWD-FNRGGGTAFDSGTTLTFLAEPAYKPVVAALEMSLSRYQ--R-LKRDAPFEYCFNS 365 (445)
Q Consensus 290 ~y~v~l~~i~vg~~~~~~~~~~~~-~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~--~-~~~~~~~~~C~~~ 365 (445)
+|+|+|++|+||++++.++...|. .++.+++||||||++++||+++|++|+++|.+++.... + ......+..||+.
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 699999999999999999888763 24678899999999999999999999999999886542 1 2223588999999
Q ss_pred CC----CCccccCeEEEEEcCCCEEEeCCCceEEEeCCceEEEEEEeC--CCCCceeechhhhceeEEEEeCCCCEEEEe
Q 046757 366 TG----FDESSVPKLVFHFADGARFEPHTKSYIIRVAHGIRCLGFVSA--TWPGASAIGNIMQQNYFWEFDLLKDRLGFA 439 (445)
Q Consensus 366 ~~----~~~~~~P~l~f~f~gg~~~~l~~~~yi~~~~~~~~C~~~~~~--~~~~~~ilG~~fl~~~y~vfD~~~~~igfa 439 (445)
+. .....+|+|+|||++|++++|++++|+++..++.+|++|... +..+..|||+.+|++++++||++++||||+
T Consensus 81 ~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~igF~ 160 (161)
T PF14541_consen 81 SSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVSPGVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGRIGFA 160 (161)
T ss_dssp GCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEECTTEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTEEEEE
T ss_pred cccccccccccCCeEEEEEeCCcceeeeccceeeeccCCCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCEEEEe
Confidence 87 356789999999988999999999999998888999999888 445789999999999999999999999999
Q ss_pred e
Q 046757 440 P 440 (445)
Q Consensus 440 ~ 440 (445)
|
T Consensus 161 ~ 161 (161)
T PF14541_consen 161 P 161 (161)
T ss_dssp E
T ss_pred C
Confidence 6
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.89 E-value=1.9e-22 Score=164.59 Aligned_cols=106 Identities=30% Similarity=0.620 Sum_probs=89.1
Q ss_pred EEEEeCCCCceEEEEEEcCCCeeeeccCCCCCCCCCCCCccCCCCCCCc-CCCCCCcccccCCCCccchhhhhcccCCCC
Q 046757 83 VEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVF-KADLSSSFKTIPCSSDMCKSEFARLFSLTF 161 (445)
Q Consensus 83 ~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~~c~~~C~~~~~~~~~~~~~f-~p~~Sst~~~~~c~~~~C~~~~~~~~~~~~ 161 (445)
++|.||||+|++.|+|||||+++||+|. .|.. |..+ ..+.| +|++|++++...
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~-~c~~-~~~~------~~~~~~~~~~sst~~~~~------------------ 54 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSV-DCQS-LAIY------SHSSYDDPSASSTYSDNG------------------ 54 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCC-CCCC-cccc------cccccCCcCCCCCCCCCC------------------
Confidence 4799999999999999999999999998 5654 4332 22556 999999987654
Q ss_pred CCCCCCCCeeeeEeCCCCeEeEEEEEEEEEeeeCCCCceeeeeeEeeeeeccCCCCC--CCCceEEec
Q 046757 162 CPTPTSPCAYDYRYADGSAAKGIFGKERVTIGLENGGKTRIEEVVMGCSDTIQGQIF--AEADGVLGL 227 (445)
Q Consensus 162 c~~~~~~~~~~~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~v~~~~fG~~~~~~~~~~--~~~~GilGL 227 (445)
|.|.+.|++|+ +.|.+++|+|+|+ +..++++.|||++...+..+ ...+|||||
T Consensus 55 -------~~~~~~Y~~g~-~~g~~~~D~v~ig-----~~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 55 -------CTFSITYGTGS-LSGGLSTDTVSIG-----DIEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred -------cEEEEEeCCCe-EEEEEEEEEEEEC-----CEEECCEEEEEEEecCCccccccccccccCC
Confidence 68999999997 8899999999998 67899999999999876323 578999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.00 E-value=3.1e-05 Score=60.76 Aligned_cols=93 Identities=18% Similarity=0.275 Sum_probs=66.2
Q ss_pred cEEEEEEeCCCCceEEEEEEcCCCeeeeccCCCCCCCCCCCCccCCCCCCCcCCCCCCcccccCCCCccchhhhhcccCC
Q 046757 80 MYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKADLSSSFKTIPCSSDMCKSEFARLFSL 159 (445)
Q Consensus 80 ~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~~c~~~C~~~~~~~~~~~~~f~p~~Sst~~~~~c~~~~C~~~~~~~~~~ 159 (445)
.|++++.|+ .+++.+++|||++.+|+.... ... + .. ....
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~-~~~-l-----------~~-------~~~~------------------ 41 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEEL-AER-L-----------GL-------PLTL------------------ 41 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHHH-HHH-c-----------CC-------CccC------------------
Confidence 589999999 899999999999999997651 100 0 00 0000
Q ss_pred CCCCCCCCCCeeeeEeCCCCeEeEEEEEEEEEeeeCCCCceeeeeeEeeeeeccCCCCCCCCceEEecCC
Q 046757 160 TFCPTPTSPCAYDYRYADGSAAKGIFGKERVTIGLENGGKTRIEEVVMGCSDTIQGQIFAEADGVLGLSY 229 (445)
Q Consensus 160 ~~c~~~~~~~~~~~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~v~~~~fG~~~~~~~~~~~~~~GilGLg~ 229 (445)
.....+...+|.........+.++|+ +..++++.+........ ..+||||+.+
T Consensus 42 --------~~~~~~~~~~G~~~~~~~~~~~i~ig-----~~~~~~~~~~v~d~~~~----~~~gIlG~d~ 94 (96)
T cd05483 42 --------GGKVTVQTANGRVRAARVRLDSLQIG-----GITLRNVPAVVLPGDAL----GVDGLLGMDF 94 (96)
T ss_pred --------CCcEEEEecCCCccceEEEcceEEEC-----CcEEeccEEEEeCCccc----CCceEeChHH
Confidence 12455677777766666779999999 67888888887766432 5899999853
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=97.25 E-value=0.0024 Score=52.62 Aligned_cols=101 Identities=19% Similarity=0.281 Sum_probs=65.7
Q ss_pred ecceecccCccccEEEEEEeCCCCceEEEEEEcCCCeeeeccCCCCCCCCCCCCccCCCCCCCcCCCCCCcccccCCCCc
Q 046757 68 MPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKADLSSSFKTIPCSSD 147 (445)
Q Consensus 68 ~pl~~~~~~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~~c~~~C~~~~~~~~~~~~~f~p~~Sst~~~~~c~~~ 147 (445)
+|+....+ +.|++++.|. .+++.++||||++.+-+.... ... --.++..-
T Consensus 2 ~~i~~~~~---g~~~v~~~In--G~~~~flVDTGAs~t~is~~~------A~~--------Lgl~~~~~----------- 51 (121)
T TIGR02281 2 VQLAKDGD---GHFYATGRVN--GRNVRFLVDTGATSVALNEED------AQR--------LGLDLNRL----------- 51 (121)
T ss_pred EEEEEcCC---CeEEEEEEEC--CEEEEEEEECCCCcEEcCHHH------HHH--------cCCCcccC-----------
Confidence 34544443 8999999998 789999999999999886541 000 00111100
Q ss_pred cchhhhhcccCCCCCCCCCCCCeeeeEeCCCCeEeEEEEEEEEEeeeCCCCceeeeeeEeeeeeccCCCCCCCCceEEec
Q 046757 148 MCKSEFARLFSLTFCPTPTSPCAYDYRYADGSAAKGIFGKERVTIGLENGGKTRIEEVVMGCSDTIQGQIFAEADGVLGL 227 (445)
Q Consensus 148 ~C~~~~~~~~~~~~c~~~~~~~~~~~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~v~~~~fG~~~~~~~~~~~~~~GilGL 227 (445)
.....+.=+.|......+..|.+++| +..++|+.+.++.... ..+|+||+
T Consensus 52 --------------------~~~~~~~ta~G~~~~~~~~l~~l~iG-----~~~~~nv~~~v~~~~~-----~~~~LLGm 101 (121)
T TIGR02281 52 --------------------GYTVTVSTANGQIKAARVTLDRVAIG-----GIVVNDVDAMVAEGGA-----LSESLLGM 101 (121)
T ss_pred --------------------CceEEEEeCCCcEEEEEEEeCEEEEC-----CEEEeCcEEEEeCCCc-----CCceEcCH
Confidence 01233344556645555688999999 7899999987775432 14799998
Q ss_pred C
Q 046757 228 S 228 (445)
Q Consensus 228 g 228 (445)
.
T Consensus 102 ~ 102 (121)
T TIGR02281 102 S 102 (121)
T ss_pred H
Confidence 5
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.23 E-value=0.047 Score=41.84 Aligned_cols=89 Identities=27% Similarity=0.304 Sum_probs=54.4
Q ss_pred EEEEeCCCCceEEEEEEcCCCeeeeccCCCCCCCCCCCCccCCCCCCCcCCCCCCcccccCCCCccchhhhhcccCCCCC
Q 046757 83 VEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKADLSSSFKTIPCSSDMCKSEFARLFSLTFC 162 (445)
Q Consensus 83 ~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~~c~~~C~~~~~~~~~~~~~f~p~~Sst~~~~~c~~~~C~~~~~~~~~~~~c 162 (445)
+++.|+ .+++.+++|||++.+.+... .... . ...+....
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~-~~~~----l---------~~~~~~~~------------------------- 39 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRS-LAKK----L---------GLKPRPKS------------------------- 39 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHH-HHHH----c---------CCCCcCCc-------------------------
Confidence 467777 78999999999998877544 1111 0 00100000
Q ss_pred CCCCCCCeeeeEeCCCCeEeEEEEEEEEEeeeCCCCceeeeeeEeeeeeccCCCCCCCCceEEecC
Q 046757 163 PTPTSPCAYDYRYADGSAAKGIFGKERVTIGLENGGKTRIEEVVMGCSDTIQGQIFAEADGVLGLS 228 (445)
Q Consensus 163 ~~~~~~~~~~~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~v~~~~fG~~~~~~~~~~~~~~GilGLg 228 (445)
....+.-.+|.........+.++|+ +..+.++.|-..... ...+||||+-
T Consensus 40 ------~~~~~~~~~g~~~~~~~~~~~i~ig-----~~~~~~~~~~v~~~~-----~~~~~iLG~d 89 (90)
T PF13650_consen 40 ------VPISVSGAGGSVTVYRGRVDSITIG-----GITLKNVPFLVVDLG-----DPIDGILGMD 89 (90)
T ss_pred ------eeEEEEeCCCCEEEEEEEEEEEEEC-----CEEEEeEEEEEECCC-----CCCEEEeCCc
Confidence 0122333445545556667789998 678888887766622 2478999974
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.85 E-value=0.033 Score=46.02 Aligned_cols=26 Identities=23% Similarity=0.079 Sum_probs=23.2
Q ss_pred CceeechhhhceeEEEEeCCCCEEEE
Q 046757 413 GASAIGNIMQQNYFWEFDLLKDRLGF 438 (445)
Q Consensus 413 ~~~ilG~~fl~~~y~vfD~~~~~igf 438 (445)
...|||..||+.+-.+.|+.+++|.|
T Consensus 99 ~d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 99 VDFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred cCEEecHHHHHhCCeEEECCCCEEEC
Confidence 35799999999999999999998864
No 31
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=94.93 E-value=0.055 Score=45.44 Aligned_cols=29 Identities=10% Similarity=-0.029 Sum_probs=26.3
Q ss_pred CceeechhhhceeEEEEeCCCCEEEEeeC
Q 046757 413 GASAIGNIMQQNYFWEFDLLKDRLGFAPS 441 (445)
Q Consensus 413 ~~~ilG~~fl~~~y~vfD~~~~~igfa~~ 441 (445)
-..|||..+|+.+...-|+.+++|-|...
T Consensus 104 ~DvILGm~WL~~~~~~IDw~~k~v~f~~p 132 (135)
T PF08284_consen 104 YDVILGMDWLKKHNPVIDWATKTVTFNSP 132 (135)
T ss_pred eeeEeccchHHhCCCEEEccCCEEEEeCC
Confidence 35899999999999999999999999754
No 32
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=94.70 E-value=0.27 Score=40.56 Aligned_cols=30 Identities=17% Similarity=0.488 Sum_probs=27.0
Q ss_pred ccEEEEEEeCCCCceEEEEEEcCCCeeeeccC
Q 046757 79 GMYFVEIKVGTPSQKLRLIVDTGSEFSWISCR 110 (445)
Q Consensus 79 ~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~ 110 (445)
..+++++.|+ ++++.+++|||++.+++.-.
T Consensus 15 ~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~ 44 (124)
T cd05479 15 PMLYINVEIN--GVPVKAFVDSGAQMTIMSKA 44 (124)
T ss_pred eEEEEEEEEC--CEEEEEEEeCCCceEEeCHH
Confidence 5788999999 89999999999999998665
No 33
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=94.66 E-value=0.59 Score=38.36 Aligned_cols=33 Identities=18% Similarity=0.178 Sum_probs=26.2
Q ss_pred CCCeeEEEeeEEECCEEeecCCcccccCCCCcEEEccccceeeechhhH
Q 046757 288 GPDYGVSVKGISIGGVMLNIPSQVWDFNRGGGTAFDSGTTLTFLAEPAY 336 (445)
Q Consensus 288 ~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~ 336 (445)
..+|.++ +.|+|+... .+||||++.+.++++..
T Consensus 9 ~g~~~v~---~~InG~~~~-------------flVDTGAs~t~is~~~A 41 (121)
T TIGR02281 9 DGHFYAT---GRVNGRNVR-------------FLVDTGATSVALNEEDA 41 (121)
T ss_pred CCeEEEE---EEECCEEEE-------------EEEECCCCcEEcCHHHH
Confidence 5667666 677888654 89999999999998843
No 34
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=92.24 E-value=0.77 Score=36.79 Aligned_cols=24 Identities=13% Similarity=0.129 Sum_probs=20.8
Q ss_pred CceeechhhhceeEEEEeCCCCEE
Q 046757 413 GASAIGNIMQQNYFWEFDLLKDRL 436 (445)
Q Consensus 413 ~~~ilG~~fl~~~y~vfD~~~~~i 436 (445)
+..+||..||+.+-++.|+.++++
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCcC
Confidence 468999999999999999987653
No 35
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=91.93 E-value=1.3 Score=34.16 Aligned_cols=29 Identities=21% Similarity=0.540 Sum_probs=24.1
Q ss_pred EEECCEEeecCCcccccCCCCcEEEccccceeeechhhHHHH
Q 046757 298 ISIGGVMLNIPSQVWDFNRGGGTAFDSGTTLTFLAEPAYKPV 339 (445)
Q Consensus 298 i~vg~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l 339 (445)
+.|+|+.+. +++|||++.+.++++.+..+
T Consensus 5 ~~Ing~~i~-------------~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 5 LLVNGKPLK-------------FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEECCEEEE-------------EEEcCCcceEEeCHHHHHHh
Confidence 678888876 89999999999998865433
No 36
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=91.93 E-value=0.19 Score=38.89 Aligned_cols=28 Identities=32% Similarity=0.420 Sum_probs=25.4
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCeeeeccC
Q 046757 81 YFVEIKVGTPSQKLRLIVDTGSEFSWISCR 110 (445)
Q Consensus 81 Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~ 110 (445)
|++++.|+ ++++.+++||||+..++.-+
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~ 28 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEK 28 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHH
Confidence 57899999 89999999999999999765
No 37
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=91.91 E-value=1.6 Score=37.39 Aligned_cols=48 Identities=15% Similarity=0.189 Sum_probs=28.5
Q ss_pred CeeeeeeecCC-CCCCeeEEEeeEEECCEEeecCCcccccCCCCcEEEccccceeeechhhH
Q 046757 276 RMRMRYTLLGL-IGPDYGVSVKGISIGGVMLNIPSQVWDFNRGGGTAFDSGTTLTFLAEPAY 336 (445)
Q Consensus 276 ~~~~~pl~~~~-~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~ 336 (445)
.+...|++..- .+..=.+....+.+.|..+. ++||||++..++..+..
T Consensus 16 ~~~~~PIV~~~~~Pevg~T~~v~l~~~~t~i~-------------vLfDSGSPTSfIr~di~ 64 (177)
T PF12384_consen 16 SITTCPIVHYIAIPEVGKTAIVQLNCKGTPIK-------------VLFDSGSPTSFIRSDIV 64 (177)
T ss_pred eeeeeeeEEEeeccccCcEEEEEEeecCcEEE-------------EEEeCCCccceeehhhH
Confidence 45666766421 11111223333455555554 99999999999998743
No 38
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=90.93 E-value=0.95 Score=40.17 Aligned_cols=91 Identities=23% Similarity=0.258 Sum_probs=62.2
Q ss_pred ceeecceecccCccccEEEEEEeCCCCceEEEEEEcCCCeeeeccCCCCCCCCCCCCccCCCCCCCcCCCCCCcccccCC
Q 046757 65 AIEMPLQAGRDYGTGMYFVEIKVGTPSQKLRLIVDTGSEFSWISCRYHCGPSCTKKGTIAGSRRRVFKADLSSSFKTIPC 144 (445)
Q Consensus 65 ~~~~pl~~~~~~~~~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~~~c~~~C~~~~~~~~~~~~~f~p~~Sst~~~~~c 144 (445)
..++-|....+ ++|.++..|- +|++..++|||-+.+-+...+. . .--|+....
T Consensus 93 ~~~v~Lak~~~---GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA-~-------------RlGid~~~l-------- 145 (215)
T COG3577 93 YQEVSLAKSRD---GHFEANGRVN--GKKVDFLVDTGATSVALNEEDA-R-------------RLGIDLNSL-------- 145 (215)
T ss_pred ceEEEEEecCC---CcEEEEEEEC--CEEEEEEEecCcceeecCHHHH-H-------------HhCCCcccc--------
Confidence 34566665544 9999999999 9999999999999888866531 1 122332211
Q ss_pred CCccchhhhhcccCCCCCCCCCCCCeeeeEeCCCCeEeEEEEEEEEEeeeCCCCceeeeeeEeeee
Q 046757 145 SSDMCKSEFARLFSLTFCPTPTSPCAYDYRYADGSAAKGIFGKERVTIGLENGGKTRIEEVVMGCS 210 (445)
Q Consensus 145 ~~~~C~~~~~~~~~~~~c~~~~~~~~~~~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~v~~~~fG~~ 210 (445)
..++.+.-+.|..-...+-.|.|.|| ++.++|+.=-++
T Consensus 146 -----------------------~y~~~v~TANG~~~AA~V~Ld~v~IG-----~I~~~nV~A~V~ 183 (215)
T COG3577 146 -----------------------DYTITVSTANGRARAAPVTLDRVQIG-----GIRVKNVDAMVA 183 (215)
T ss_pred -----------------------CCceEEEccCCccccceEEeeeEEEc-----cEEEcCchhhee
Confidence 13555666788766667889999999 677776654333
No 39
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=89.76 E-value=0.55 Score=34.57 Aligned_cols=30 Identities=30% Similarity=0.691 Sum_probs=27.5
Q ss_pred ccEEEEEEeCCCCceEEEEEEcCCCeeeeccC
Q 046757 79 GMYFVEIKVGTPSQKLRLIVDTGSEFSWISCR 110 (445)
Q Consensus 79 ~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~ 110 (445)
+.+++.+.|| ++.+.+++|||++..+|...
T Consensus 7 g~~~v~~~I~--g~~~~alvDtGat~~fis~~ 36 (72)
T PF13975_consen 7 GLMYVPVSIG--GVQVKALVDTGATHNFISES 36 (72)
T ss_pred CEEEEEEEEC--CEEEEEEEeCCCcceecCHH
Confidence 7899999999 79999999999999988765
No 40
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=89.21 E-value=23 Score=34.61 Aligned_cols=29 Identities=34% Similarity=0.397 Sum_probs=20.6
Q ss_pred EEEEEeCCCC----ceE-EEEEEcCCCeeeeccC
Q 046757 82 FVEIKVGTPS----QKL-RLIVDTGSEFSWISCR 110 (445)
Q Consensus 82 ~~~i~iGTP~----q~~-~l~~DTGS~~~Wv~~~ 110 (445)
++.|.|=-|. |.+ +|+|||||.-+=|..+
T Consensus 25 ~VsVtVC~PGts~CqTIdnvlVDTGS~GLRi~~s 58 (370)
T PF11925_consen 25 TVSVTVCAPGTSNCQTIDNVLVDTGSYGLRIFAS 58 (370)
T ss_pred eeEEEEeCCCCCCceeeCcEEEeccchhhhHHHh
Confidence 4666664443 556 8999999998877655
No 41
>PF13650 Asp_protease_2: Aspartyl protease
Probab=85.72 E-value=1.1 Score=33.95 Aligned_cols=28 Identities=14% Similarity=0.383 Sum_probs=22.3
Q ss_pred EEECCEEeecCCcccccCCCCcEEEccccceeeechhhHHH
Q 046757 298 ISIGGVMLNIPSQVWDFNRGGGTAFDSGTTLTFLAEPAYKP 338 (445)
Q Consensus 298 i~vg~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~ 338 (445)
+.|+|+.+. ++||||++.+.+.++.+++
T Consensus 3 v~vng~~~~-------------~liDTGa~~~~i~~~~~~~ 30 (90)
T PF13650_consen 3 VKVNGKPVR-------------FLIDTGASISVISRSLAKK 30 (90)
T ss_pred EEECCEEEE-------------EEEcCCCCcEEECHHHHHH
Confidence 567887655 9999999999999875443
No 42
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=80.95 E-value=2.2 Score=33.32 Aligned_cols=27 Identities=30% Similarity=0.690 Sum_probs=23.5
Q ss_pred EEEEEeCCCCceEEEEEEcCCCeeeeccC
Q 046757 82 FVEIKVGTPSQKLRLIVDTGSEFSWISCR 110 (445)
Q Consensus 82 ~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~ 110 (445)
+++|.|. .+++.+++||||+.+-++..
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~ 33 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEK 33 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSG
T ss_pred eEEEeEC--CEEEEEEEecCCCcceeccc
Confidence 5778888 78999999999999888765
No 43
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=80.30 E-value=2.7 Score=30.85 Aligned_cols=29 Identities=38% Similarity=0.657 Sum_probs=23.1
Q ss_pred EEECCEEeecCCcccccCCCCcEEEccccceeeechhhHHHH
Q 046757 298 ISIGGVMLNIPSQVWDFNRGGGTAFDSGTTLTFLAEPAYKPV 339 (445)
Q Consensus 298 i~vg~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l 339 (445)
+.|++..+. +++|||++-.+++.+..+.+
T Consensus 13 ~~I~g~~~~-------------alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQVK-------------ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEEE-------------EEEeCCCcceecCHHHHHHh
Confidence 677887765 99999999999998854433
No 44
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=79.40 E-value=3.3 Score=31.66 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=22.4
Q ss_pred EEECCEEeecCCcccccCCCCcEEEccccceeeechhhHHH
Q 046757 298 ISIGGVMLNIPSQVWDFNRGGGTAFDSGTTLTFLAEPAYKP 338 (445)
Q Consensus 298 i~vg~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~ 338 (445)
+.|+++.+. ++||||++.++++.+..+.
T Consensus 7 v~i~~~~~~-------------~llDTGa~~s~i~~~~~~~ 34 (96)
T cd05483 7 VTINGQPVR-------------FLLDTGASTTVISEELAER 34 (96)
T ss_pred EEECCEEEE-------------EEEECCCCcEEcCHHHHHH
Confidence 677877665 9999999999999875433
No 45
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=75.53 E-value=4.1 Score=30.99 Aligned_cols=29 Identities=24% Similarity=0.272 Sum_probs=23.7
Q ss_pred EEECCEEeecCCcccccCCCCcEEEccccceeeechhhHHHH
Q 046757 298 ISIGGVMLNIPSQVWDFNRGGGTAFDSGTTLTFLAEPAYKPV 339 (445)
Q Consensus 298 i~vg~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l 339 (445)
+.|+|+.+. .++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~~-------------fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV-------------FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE-------------EEEECCCCeEEECHHHhhhc
Confidence 567887765 89999999999998866553
No 46
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=74.41 E-value=9.2 Score=34.17 Aligned_cols=52 Identities=15% Similarity=0.004 Sum_probs=32.6
Q ss_pred ccCeEEEEEcCCCEEEeCCCceEEEeCCceEEEEEEeCCCCCceeechhhhceeEEEEeCCCCEEEEee
Q 046757 372 SVPKLVFHFADGARFEPHTKSYIIRVAHGIRCLGFVSATWPGASAIGNIMQQNYFWEFDLLKDRLGFAP 440 (445)
Q Consensus 372 ~~P~l~f~f~gg~~~~l~~~~yi~~~~~~~~C~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfa~ 440 (445)
..+.+.+.+ ++..|.+|- ++.+. .+-..|||++|+|.|+=....+ .+|-|-.
T Consensus 66 ~~~~~~i~I-~~~~F~IP~------------iYq~~---~g~d~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 66 KAKNGKIQI-ADKIFRIPT------------IYQQE---SGIDIILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred EecCceEEE-ccEEEeccE------------EEEec---CCCCEEecchHHHhcCCcEEEc-cEEEEEe
Confidence 346666666 566666642 22221 1346999999999887666665 4576653
No 47
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=73.70 E-value=21 Score=27.45 Aligned_cols=79 Identities=18% Similarity=0.207 Sum_probs=46.5
Q ss_pred CCCCcEEEccccceeeechhhHHHHHHHHHHHhhccccCCCCCCcccccccCCCCccccCeEEEEEcCCCEEEeCCCceE
Q 046757 315 NRGGGTAFDSGTTLTFLAEPAYKPVVAALEMSLSRYQRLKRDAPFEYCFNSTGFDESSVPKLVFHFADGARFEPHTKSYI 394 (445)
Q Consensus 315 ~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~l~f~f~gg~~~~l~~~~yi 394 (445)
..+...+||||+....+|....+.- ..-.++.++-.+|..|..-++..+
T Consensus 7 ~s~~~fLVDTGA~vSviP~~~~~~~-------------------------------~~~~~~~l~AANgt~I~tyG~~~l 55 (89)
T cd06094 7 TSGLRFLVDTGAAVSVLPASSTKKS-------------------------------LKPSPLTLQAANGTPIATYGTRSL 55 (89)
T ss_pred CCCcEEEEeCCCceEeecccccccc-------------------------------ccCCceEEEeCCCCeEeeeeeEEE
Confidence 3456689999999999997632110 111345666667777666665544
Q ss_pred E-EeCCc-eEEEEEEeCCCCCceeechhhhcee
Q 046757 395 I-RVAHG-IRCLGFVSATWPGASAIGNIMQQNY 425 (445)
Q Consensus 395 ~-~~~~~-~~C~~~~~~~~~~~~ilG~~fl~~~ 425 (445)
. +..-. ..=+.|.-.+ -...|||.-||+++
T Consensus 56 ~ldlGlrr~~~w~FvvAd-v~~pIlGaDfL~~~ 87 (89)
T cd06094 56 TLDLGLRRPFAWNFVVAD-VPHPILGADFLQHY 87 (89)
T ss_pred EEEcCCCcEEeEEEEEcC-CCcceecHHHHHHc
Confidence 4 22222 1112333333 23679999999986
No 48
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=72.45 E-value=4.5 Score=31.00 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=21.4
Q ss_pred EEEeCCCCceEEEEEEcCCCeeeeccC
Q 046757 84 EIKVGTPSQKLRLIVDTGSEFSWISCR 110 (445)
Q Consensus 84 ~i~iGTP~q~~~l~~DTGS~~~Wv~~~ 110 (445)
.+.|+ .|.+.+++|||.+++-+...
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 45677 89999999999999999754
No 49
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=71.99 E-value=4.7 Score=30.66 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=21.2
Q ss_pred EEEeCCCCceEEEEEEcCCCeeeeccC
Q 046757 84 EIKVGTPSQKLRLIVDTGSEFSWISCR 110 (445)
Q Consensus 84 ~i~iGTP~q~~~l~~DTGS~~~Wv~~~ 110 (445)
.+.|. ++++.+++|||++.+-+...
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~ 26 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSD 26 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHH
Confidence 45666 79999999999999998765
No 50
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=71.51 E-value=4.6 Score=31.45 Aligned_cols=25 Identities=20% Similarity=0.539 Sum_probs=21.1
Q ss_pred EEECCEEeecCCcccccCCCCcEEEccccceeeechhh
Q 046757 298 ISIGGVMLNIPSQVWDFNRGGGTAFDSGTTLTFLAEPA 335 (445)
Q Consensus 298 i~vg~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~ 335 (445)
|.++++.+. ++||||+..+.++.+.
T Consensus 10 v~i~g~~i~-------------~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 10 VKINGKKIK-------------ALLDTGADVSIISEKD 34 (100)
T ss_dssp EEETTEEEE-------------EEEETTBSSEEESSGG
T ss_pred EeECCEEEE-------------EEEecCCCcceecccc
Confidence 667777765 9999999999999864
No 51
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=59.24 E-value=12 Score=29.06 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=17.4
Q ss_pred cEEEccccceeeechhhHHHH
Q 046757 319 GTAFDSGTTLTFLAEPAYKPV 339 (445)
Q Consensus 319 ~~iiDSGTt~~~lp~~~~~~l 339 (445)
.+.+|||++...||...|+.+
T Consensus 12 ~~~vDtGA~vnllp~~~~~~l 32 (93)
T cd05481 12 KFQLDTGATCNVLPLRWLKSL 32 (93)
T ss_pred EEEEecCCEEEeccHHHHhhh
Confidence 389999999999998866544
No 52
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=59.03 E-value=21 Score=31.88 Aligned_cols=32 Identities=19% Similarity=0.264 Sum_probs=27.0
Q ss_pred CCCeeEEEeeEEECCEEeecCCcccccCCCCcEEEccccceeeechhh
Q 046757 288 GPDYGVSVKGISIGGVMLNIPSQVWDFNRGGGTAFDSGTTLTFLAEPA 335 (445)
Q Consensus 288 ~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~ 335 (445)
+.+|.++ ..|||+.+. .++|||.|.+.|+++.
T Consensus 103 ~GHF~a~---~~VNGk~v~-------------fLVDTGATsVal~~~d 134 (215)
T COG3577 103 DGHFEAN---GRVNGKKVD-------------FLVDTGATSVALNEED 134 (215)
T ss_pred CCcEEEE---EEECCEEEE-------------EEEecCcceeecCHHH
Confidence 5677776 688998876 8999999999999874
No 53
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=58.19 E-value=13 Score=31.91 Aligned_cols=29 Identities=17% Similarity=0.376 Sum_probs=24.3
Q ss_pred EEEEEeCCCCceEEEEEEcCCCeeeeccC
Q 046757 82 FVEIKVGTPSQKLRLIVDTGSEFSWISCR 110 (445)
Q Consensus 82 ~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~ 110 (445)
...+.+++-..+++++|||||..-++...
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 56677777799999999999999888654
No 54
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=49.49 E-value=22 Score=29.28 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=21.5
Q ss_pred EEECCEEeecCCcccccCCCCcEEEccccceeeechhhHHH
Q 046757 298 ISIGGVMLNIPSQVWDFNRGGGTAFDSGTTLTFLAEPAYKP 338 (445)
Q Consensus 298 i~vg~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~ 338 (445)
++++|+.+. |+||||+..+.++.+..++
T Consensus 29 ~~ing~~vk-------------A~VDtGAQ~tims~~~a~r 56 (124)
T PF09668_consen 29 CKINGVPVK-------------AFVDTGAQSTIMSKSCAER 56 (124)
T ss_dssp EEETTEEEE-------------EEEETT-SS-EEEHHHHHH
T ss_pred EEECCEEEE-------------EEEeCCCCccccCHHHHHH
Confidence 678888876 9999999999999885444
No 55
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=46.76 E-value=20 Score=28.15 Aligned_cols=18 Identities=11% Similarity=0.211 Sum_probs=15.3
Q ss_pred CcEEEccccceeeechhh
Q 046757 318 GGTAFDSGTTLTFLAEPA 335 (445)
Q Consensus 318 ~~~iiDSGTt~~~lp~~~ 335 (445)
..++||||++.++++...
T Consensus 12 ~~~~~DTGSs~~Wv~~~~ 29 (109)
T cd05470 12 FNVLLDTGSSNLWVPSVD 29 (109)
T ss_pred EEEEEeCCCCCEEEeCCC
Confidence 349999999999999763
No 56
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=41.35 E-value=19 Score=29.37 Aligned_cols=23 Identities=13% Similarity=0.024 Sum_probs=18.4
Q ss_pred ceeechhhhceeEEEEeCCCCEE
Q 046757 414 ASAIGNIMQQNYFWEFDLLKDRL 436 (445)
Q Consensus 414 ~~ilG~~fl~~~y~vfD~~~~~i 436 (445)
..+||...|+..-.++|....++
T Consensus 95 ~~liG~~~lk~l~~~vn~~~g~L 117 (125)
T COG5550 95 EPLIGVNLLKLLGLVVNPKTGKL 117 (125)
T ss_pred ccchhhhhhhhccEEEcCCcceE
Confidence 44999999999999998865554
No 57
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=40.41 E-value=1.6e+02 Score=28.74 Aligned_cols=39 Identities=15% Similarity=0.109 Sum_probs=30.9
Q ss_pred EEE-EEEeCCCCCceeechhhhceeEEEEeCCCCEEEEeeC
Q 046757 402 RCL-GFVSATWPGASAIGNIMQQNYFWEFDLLKDRLGFAPS 441 (445)
Q Consensus 402 ~C~-~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfa~~ 441 (445)
.|- .+.... .-...||...||.+--.-|++++++-|+..
T Consensus 307 ~c~ftV~d~~-~~d~llGLd~Lrr~~ccIdL~~~~L~ig~~ 346 (380)
T KOG0012|consen 307 PCSFTVLDRR-DMDLLLGLDMLRRHQCCIDLKTNVLRIGNT 346 (380)
T ss_pred ccceEEecCC-CcchhhhHHHHHhccceeecccCeEEecCC
Confidence 474 666554 345899999999999999999999888654
No 58
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=39.66 E-value=42 Score=27.59 Aligned_cols=30 Identities=23% Similarity=0.452 Sum_probs=22.4
Q ss_pred ccEEEEEEeCCCCceEEEEEEcCCCeeeeccC
Q 046757 79 GMYFVEIKVGTPSQKLRLIVDTGSEFSWISCR 110 (445)
Q Consensus 79 ~~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~ 110 (445)
...|+++.|+ .+++++++|||.-.+-+.-+
T Consensus 23 ~mLyI~~~in--g~~vkA~VDtGAQ~tims~~ 52 (124)
T PF09668_consen 23 SMLYINCKIN--GVPVKAFVDTGAQSTIMSKS 52 (124)
T ss_dssp ---EEEEEET--TEEEEEEEETT-SS-EEEHH
T ss_pred ceEEEEEEEC--CEEEEEEEeCCCCccccCHH
Confidence 4678999999 89999999999988877654
No 59
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=29.95 E-value=69 Score=30.83 Aligned_cols=16 Identities=19% Similarity=0.478 Sum_probs=14.3
Q ss_pred cEEEccccceeeechh
Q 046757 319 GTAFDSGTTLTFLAEP 334 (445)
Q Consensus 319 ~~iiDSGTt~~~lp~~ 334 (445)
.++||||++.+++|..
T Consensus 25 ~v~~DTGSs~lWv~~~ 40 (317)
T cd06098 25 TVIFDTGSSNLWVPSS 40 (317)
T ss_pred EEEECCCccceEEecC
Confidence 3999999999999964
No 60
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=29.78 E-value=50 Score=31.04 Aligned_cols=17 Identities=12% Similarity=0.296 Sum_probs=14.8
Q ss_pred cEEEccccceeeechhh
Q 046757 319 GTAFDSGTTLTFLAEPA 335 (445)
Q Consensus 319 ~~iiDSGTt~~~lp~~~ 335 (445)
.++||||++.+++|..-
T Consensus 15 ~v~~DTGS~~~wv~~~~ 31 (278)
T cd06097 15 NLDLDTGSSDLWVFSSE 31 (278)
T ss_pred EEEEeCCCCceeEeeCC
Confidence 39999999999999763
No 61
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=27.14 E-value=75 Score=30.75 Aligned_cols=16 Identities=13% Similarity=0.202 Sum_probs=14.3
Q ss_pred cEEEccccceeeechh
Q 046757 319 GTAFDSGTTLTFLAEP 334 (445)
Q Consensus 319 ~~iiDSGTt~~~lp~~ 334 (445)
.++||||++.+++|..
T Consensus 18 ~v~~DTGS~~~wv~~~ 33 (326)
T cd06096 18 SLILDTGSSSLSFPCS 33 (326)
T ss_pred EEEEeCCCCceEEecC
Confidence 3999999999999865
No 62
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=25.12 E-value=97 Score=24.57 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=19.5
Q ss_pred EEEEeCCCC----ceEEEEEEcCCCeee-ecc
Q 046757 83 VEIKVGTPS----QKLRLIVDTGSEFSW-ISC 109 (445)
Q Consensus 83 ~~i~iGTP~----q~~~l~~DTGS~~~W-v~~ 109 (445)
++|.|..|. -++.+++|||.+..- ++.
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~ 33 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPP 33 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCH
Confidence 567787772 368999999988654 443
No 63
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=24.40 E-value=89 Score=30.08 Aligned_cols=16 Identities=13% Similarity=0.329 Sum_probs=14.1
Q ss_pred cEEEccccceeeechh
Q 046757 319 GTAFDSGTTLTFLAEP 334 (445)
Q Consensus 319 ~~iiDSGTt~~~lp~~ 334 (445)
.++||||++.+++|..
T Consensus 25 ~v~~DTGSs~~wv~~~ 40 (320)
T cd05488 25 KVILDTGSSNLWVPSV 40 (320)
T ss_pred EEEEecCCcceEEEcC
Confidence 3999999999999964
No 64
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=23.22 E-value=1.2e+02 Score=21.30 Aligned_cols=18 Identities=33% Similarity=0.595 Sum_probs=15.2
Q ss_pred EEEccccceeeechhhHH
Q 046757 320 TAFDSGTTLTFLAEPAYK 337 (445)
Q Consensus 320 ~iiDSGTt~~~lp~~~~~ 337 (445)
+++|+|.+...+..+.++
T Consensus 12 ~liDtgs~~~~~~~~~~~ 29 (92)
T cd00303 12 ALVDSGASVNFISESLAK 29 (92)
T ss_pred EEEcCCCcccccCHHHHH
Confidence 899999999988887543
No 65
>PTZ00147 plasmepsin-1; Provisional
Probab=23.17 E-value=1.1e+02 Score=31.21 Aligned_cols=16 Identities=19% Similarity=0.382 Sum_probs=14.3
Q ss_pred cEEEccccceeeechh
Q 046757 319 GTAFDSGTTLTFLAEP 334 (445)
Q Consensus 319 ~~iiDSGTt~~~lp~~ 334 (445)
.++||||++.+|+|..
T Consensus 154 ~Vi~DTGSsdlWVps~ 169 (453)
T PTZ00147 154 NFIFDTGSANLWVPSI 169 (453)
T ss_pred EEEEeCCCCcEEEeec
Confidence 4999999999999964
No 66
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=21.87 E-value=1.1e+02 Score=29.30 Aligned_cols=33 Identities=24% Similarity=0.283 Sum_probs=22.9
Q ss_pred CCCeeEEEeeEEECCEEeecCCcccccCCCCcEEEccccceeeechh
Q 046757 288 GPDYGVSVKGISIGGVMLNIPSQVWDFNRGGGTAFDSGTTLTFLAEP 334 (445)
Q Consensus 288 ~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~ 334 (445)
+..|.+. |.||.-.. ...++||||++.+++|..
T Consensus 8 ~~~Y~~~---i~vGtp~q-----------~~~v~~DTGS~~~wv~~~ 40 (317)
T cd05478 8 DMEYYGT---ISIGTPPQ-----------DFTVIFDTGSSNLWVPSV 40 (317)
T ss_pred CCEEEEE---EEeCCCCc-----------EEEEEEeCCCccEEEecC
Confidence 4456665 67775221 233999999999999964
No 67
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=21.57 E-value=1.1e+02 Score=29.60 Aligned_cols=16 Identities=19% Similarity=0.451 Sum_probs=14.2
Q ss_pred cEEEccccceeeechh
Q 046757 319 GTAFDSGTTLTFLAEP 334 (445)
Q Consensus 319 ~~iiDSGTt~~~lp~~ 334 (445)
.++||||++.+++|..
T Consensus 21 ~v~~DTGSs~~Wv~~~ 36 (325)
T cd05490 21 TVVFDTGSSNLWVPSV 36 (325)
T ss_pred EEEEeCCCccEEEEcC
Confidence 4999999999999864
No 68
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=20.48 E-value=1.1e+02 Score=28.97 Aligned_cols=14 Identities=14% Similarity=0.380 Sum_probs=12.8
Q ss_pred cEEEccccceeeec
Q 046757 319 GTAFDSGTTLTFLA 332 (445)
Q Consensus 319 ~~iiDSGTt~~~lp 332 (445)
.++||||++.+++|
T Consensus 17 ~v~~DTgS~~~wv~ 30 (295)
T cd05474 17 TVLLDTGSSDLWVP 30 (295)
T ss_pred EEEEeCCCCcceee
Confidence 39999999999999
No 69
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=20.35 E-value=1.2e+02 Score=29.21 Aligned_cols=16 Identities=19% Similarity=0.497 Sum_probs=14.3
Q ss_pred cEEEccccceeeechh
Q 046757 319 GTAFDSGTTLTFLAEP 334 (445)
Q Consensus 319 ~~iiDSGTt~~~lp~~ 334 (445)
.++||||++.+++|..
T Consensus 23 ~v~~DTGSs~~Wv~~~ 38 (326)
T cd05487 23 KVVFDTGSSNLWVPSS 38 (326)
T ss_pred EEEEeCCccceEEccC
Confidence 4999999999999964
No 70
>PF13752 DUF4165: Domain of unknown function (DUF4165)
Probab=20.23 E-value=2.1e+02 Score=23.51 Aligned_cols=51 Identities=10% Similarity=-0.027 Sum_probs=36.7
Q ss_pred ceEEECCCCCCCCeeeeeeecCCCCCCeeEEEeeEEECCEEeecCCcccccCCCCcEEEccc
Q 046757 264 NYLIFGEESKRMRMRMRYTLLGLIGPDYGVSVKGISIGGVMLNIPSQVWDFNRGGGTAFDSG 325 (445)
Q Consensus 264 g~l~fGg~d~~~~~~~~pl~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~~~~iiDSG 325 (445)
-.+.+.|-++.|.....|-. .++.|.|+.+=+...|..+. ......+||+-
T Consensus 72 ~~~s~~G~efYGk~ltlp~l---~dG~ytvk~eiL~s~g~vV~--------t~s~~~~IDtt 122 (124)
T PF13752_consen 72 RRISSNGKEFYGKELTLPAL---GDGTYTVKSEILDSQGTVVQ--------TYSYPFTIDTT 122 (124)
T ss_pred eeEEeCCceeeeeEEEeccC---CCCcEEEEEEeeccCCCEEE--------eeeEeEEEecc
Confidence 34667777766766666665 47899999998888888775 34566888874
No 71
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=20.14 E-value=1.4e+02 Score=24.88 Aligned_cols=29 Identities=21% Similarity=0.338 Sum_probs=24.0
Q ss_pred cEEEEEEeCCCCceEEEEEEcCCCeeeeccC
Q 046757 80 MYFVEIKVGTPSQKLRLIVDTGSEFSWISCR 110 (445)
Q Consensus 80 ~Y~~~i~iGTP~q~~~l~~DTGS~~~Wv~~~ 110 (445)
.-.+.+.|. .++..+++|+|+...+|..+
T Consensus 21 vi~g~~~I~--~~~~~vLiDSGAThsFIs~~ 49 (135)
T PF08284_consen 21 VITGTFLIN--SIPASVLIDSGATHSFISSS 49 (135)
T ss_pred eEEEEEEec--cEEEEEEEecCCCcEEccHH
Confidence 346778888 69999999999999998665
Done!