BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046759
         (386 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2EVT|A Chain A, Crystal Structure Of D48v Mutant Of Human Glycolipid
           Transfer Protein
 pdb|3S0I|A Chain A, Crystal Structure Of D48v Mutant Of Human Glycolipid
           Transfer Protein Complexed With 3-O-Sulfo
           Galactosylceramide Containing Nervonoyl Acyl Chain
          Length = 209

 Score = 30.4 bits (67), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)

Query: 334 MLFKAENDTTPNPACQKDES---MEPCFHTPPFYDCRG 368
           M   AE+   P PA ++ E+   +E   H PPF+DC G
Sbjct: 1   MALLAEHLLKPLPADKQIETGPFLEAVSHLPPFFDCLG 38


>pdb|3RIC|A Chain A, Crystal Structure Of D48v||a47d Mutant Of Human Glycolipid
           Transfer Protein Complexed With
           3-O-Sulfo-Galactosylceramide Containing Nervonoyl Acyl
           Chain (24:1)
          Length = 209

 Score = 30.4 bits (67), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)

Query: 334 MLFKAENDTTPNPACQKDES---MEPCFHTPPFYDCRG 368
           M   AE+   P PA ++ E+   +E   H PPF+DC G
Sbjct: 1   MALLAEHLLKPLPADKQIETGPFLEAVSHLPPFFDCLG 38


>pdb|1SWX|A Chain A, Crystal Structure Of A Human Glycolipid Transfer Protein
           In Apo-Form
 pdb|1SX6|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein In
           Lactosylceramide-Bound Form
 pdb|2EUK|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
           Complexed With 24:1 Galactosylceramide
 pdb|2EUM|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
           Complexed With 8:0 Lactosylceramide
 pdb|2EVD|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
           Complexed With 12:0 Lactosylceramide
 pdb|2EVL|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
           Complexed With 18:2 Galactosylceramide
 pdb|2EVS|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
           Complexed With N-Hexyl-Beta-D-Glucoside
 pdb|2EVS|E Chain E, Crystal Structure Of Human Glycolipid Transfer Protein
           Complexed With N-Hexyl-Beta-D-Glucoside
 pdb|3RWV|A Chain A, Crystal Structure Of Apo-Form Of Human Glycolipid Transfer
           Protein At 1.5 A Resolution
 pdb|3RWV|B Chain B, Crystal Structure Of Apo-Form Of Human Glycolipid Transfer
           Protein At 1.5 A Resolution
 pdb|3RZN|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
           Complexed With 3-O-Sulfo-Galactosylceramide Containing
           Nervonoyl Acyl Chain (24:1)
 pdb|3S0K|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
           Complexed With Glucosylceramide Containing Oleoyl Acyl
           Chain (18:1)
          Length = 209

 Score = 30.4 bits (67), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)

Query: 334 MLFKAENDTTPNPACQKDES---MEPCFHTPPFYDCRG 368
           M   AE+   P PA ++ E+   +E   H PPF+DC G
Sbjct: 1   MALLAEHLLKPLPADKQIETGPFLEAVSHLPPFFDCLG 38


>pdb|1WBE|A Chain A, X-Ray Structure Of Bovine Gltp
          Length = 209

 Score = 30.0 bits (66), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)

Query: 334 MLFKAENDTTPNPACQKDES---MEPCFHTPPFYDCRG 368
           M   AE+   P PA ++ E+   +E   H PPF+DC G
Sbjct: 1   MALLAEHLLRPLPADKQIETGPFLEAVSHLPPFFDCLG 38


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,584,885
Number of Sequences: 62578
Number of extensions: 400212
Number of successful extensions: 853
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 852
Number of HSP's gapped (non-prelim): 5
length of query: 386
length of database: 14,973,337
effective HSP length: 101
effective length of query: 285
effective length of database: 8,652,959
effective search space: 2466093315
effective search space used: 2466093315
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)