Query 046759
Match_columns 386
No_of_seqs 127 out of 151
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 04:13:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046759.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046759hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03254 XG_FTase: Xyloglucan 100.0 5E-127 1E-131 972.9 29.0 294 72-368 34-476 (476)
2 PF05830 NodZ: Nodulation prot 99.3 1.8E-11 3.9E-16 120.9 10.1 188 127-332 3-286 (321)
3 PF01531 Glyco_transf_11: Glyc 92.5 0.5 1.1E-05 46.3 7.9 35 127-161 29-65 (298)
4 PF10250 O-FucT: GDP-fucose pr 84.2 1.1 2.5E-05 43.6 3.9 68 257-333 260-331 (351)
5 PF10250 O-FucT: GDP-fucose pr 72.4 3.1 6.8E-05 40.6 2.9 29 133-161 6-34 (351)
6 TIGR03029 EpsG chain length de 34.8 78 0.0017 30.1 5.3 57 105-163 83-141 (274)
7 cd00550 ArsA_ATPase Oxyanion-t 30.7 64 0.0014 30.9 4.0 48 127-174 1-50 (254)
8 COG1051 ADP-ribose pyrophospha 29.2 41 0.00088 29.8 2.2 25 154-186 20-44 (145)
9 PF03841 SelA: L-seryl-tRNA se 29.0 27 0.00058 36.5 1.1 20 72-91 211-236 (367)
10 PF02374 ArsA_ATPase: Anion-tr 28.9 44 0.00096 33.3 2.6 50 127-176 2-53 (305)
11 cd02036 MinD Bacterial cell di 27.1 1.2E+02 0.0025 26.1 4.7 42 130-180 4-46 (179)
12 PF13614 AAA_31: AAA domain; P 26.7 1.2E+02 0.0026 25.7 4.6 35 129-163 4-38 (157)
13 PF07136 DUF1385: Protein of u 25.5 28 0.00061 34.2 0.6 17 84-100 128-144 (236)
14 PRK10014 DNA-binding transcrip 25.1 2E+02 0.0044 27.4 6.3 76 215-293 25-100 (342)
No 1
>PF03254 XG_FTase: Xyloglucan fucosyltransferase; InterPro: IPR004938 Plant cell walls are crucial for development, signal transduction, and disease resistance in plants. Cell walls are made of cellulose, hemicelluloses, and pectins. Xyloglucan (XG), the principal load-bearing hemicellulose of dicotyledonous plants, has a terminal fucosyl residue. This fucosyltransferase adds this residue []. ; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0042546 cell wall biogenesis, 0016020 membrane
Probab=100.00 E-value=4.7e-127 Score=972.88 Aligned_cols=294 Identities=60% Similarity=1.054 Sum_probs=279.3
Q ss_pred cccccCC---------------chhh-----------HHHHHHHhHHhhhhccCCCChhHHHHHHHhhccCCCCCCCCCC
Q 046759 72 DARILEA---------------RSFL-----------YLIYKLINYEALHKYCGPKTQSYNKTLKKVKSSHSSSGSAGTD 125 (386)
Q Consensus 72 ~d~Llgg---------------~s~~-----------yLvskLR~YEalHrrCgPgT~~Y~~a~~~L~s~~~~~~~~~~~ 125 (386)
+|||||| ||++ ||++|||+||+|||||||||++|+||+++|++|++ ++ +++
T Consensus 34 ~d~llgglL~~~fde~sC~SRy~~~~yrk~s~~~pSpyL~skLR~YE~lHrrCgp~t~~y~~a~~~L~s~~~-~~--~~~ 110 (476)
T PF03254_consen 34 NDKLLGGLLSPGFDERSCLSRYQSSLYRKPSPHKPSPYLVSKLRRYEALHRRCGPGTESYNKAVEQLRSGHS-DG--TSE 110 (476)
T ss_pred cccccccccCCCCCcccccchhhhhhhcCCCCCCCCHHHHHHHHHHHHHHhhhCCCchhhHHHHHHHhccCC-CC--CCC
Confidence 7999999 5554 99999999999999999999999999999999976 44 789
Q ss_pred ccEEEeeccCCcchhHHHHHHHHHHHHHhCcEeeeecCCCCCCCccccCCCCCCCCCCCCcccccccCCCCCCCcc----
Q 046759 126 CKYVVWVAFSGLGNKVLSVTAVLLYALLTNRVMLIDRGEDTVDLFYEPFPKTSWIPPLDFLITQKFNGFNMKSPES---- 201 (386)
Q Consensus 126 CkYlVw~~~~GLGNRmLslaSAFLYALLT~RVLLVd~~~d~~~LFCEPFPgsSWlLP~dFPl~~~~~~~~~~s~~s---- 201 (386)
||||||++++|||||||+||||||||||||||||||+++||++|||||||||||+||+|||+.+.+++|+.++++|
T Consensus 111 CkYvVw~~~~GLGNRmLslaSaFLYAlLT~RVLLV~~~~d~~~LFCEPFpgsSWlLP~dFP~~~~~~~~~~~~~~sygnm 190 (476)
T PF03254_consen 111 CKYVVWIPYSGLGNRMLSLASAFLYALLTNRVLLVDPGKDMADLFCEPFPGSSWLLPPDFPLKNQLNGFSQESAESYGNM 190 (476)
T ss_pred CcEEEEecCCchHHHHHHHHHHHHHHHHhCcEEEEecCCchhhhhcCCCCCCceeCcCCCCchhhccCCCCCchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998778888777665
Q ss_pred --------------------------------------------------------------------------------
Q 046759 202 -------------------------------------------------------------------------------- 201 (386)
Q Consensus 202 -------------------------------------------------------------------------------- 201 (386)
T Consensus 191 l~~~~~~~~~~~~p~~vyl~L~~~~~~~d~~FfCd~~Q~~L~~vpWLil~sd~YFvP~LFl~P~f~~eL~~lFP~k~tvF 270 (476)
T PF03254_consen 191 LKNKSINNSDNSLPPYVYLHLEHDYDDHDKLFFCDEDQALLRKVPWLILRSDQYFVPSLFLVPSFRPELDRLFPEKDTVF 270 (476)
T ss_pred HhcCCccccccCCCceeEEEecccCCcCCCceecCccHHHHhcCCeEEEecCcceeehhhhchHHHHHHHHhcCChhHHH
Confidence
Q ss_pred ------------------------ccccccceeeeEEEEcCCCCCChHHHHHHHHhhhhccCCCCCC-ccccc-ccccCC
Q 046759 202 ------------------------SLAKADERIGIQVRVFDTRPGPFKYVMDQILDCTLKQKLLPEV-DNDES-AIKSSA 255 (386)
Q Consensus 202 ------------------------yLa~AderiGIQvRvF~~~~~p~~~v~dQIl~Ct~~e~LLPev-~~~~~-~~~~~~ 255 (386)
|||+||||||||||||+++++||++++|||++|+++|||||+| +++++ ++++.+
T Consensus 271 hhL~RYLfhPsN~VW~~Itryy~ayLa~Ad~riGIQIRvf~~~~~~~~~~~dqIl~C~~~e~LLP~v~~~~~~~~~~~~~ 350 (476)
T PF03254_consen 271 HHLGRYLFHPSNQVWGLITRYYDAYLAKADERIGIQIRVFDPKPGPFQHVLDQILSCTQQEKLLPEVVDTQEPAASSSSK 350 (476)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHccCcCceeEEEEEecCCCCCcchhHHHHHHHHHhhcccCCCccccccccccccCC
Confidence 9999999999999999999999999999999999999999999 44444 455677
Q ss_pred CCceeEEEEeccchHHHHHHHHhhccccccccceEEEEcCCchhhhhccccchhHHHHHHHHHHhhccceeccCccc---
Q 046759 256 KPKLKAVLVTSLNSRYYGILRNMYWEYSTVTGDMVTVYQPSHEEYQQTEKSSHNGKALAEMYLLGITDVLITSSWFE--- 332 (386)
Q Consensus 256 ~~k~kAVLVtSL~~~Y~e~Lr~mY~~~~T~tGe~V~V~QPShEe~Q~~~~~~Hn~KAlaEmyLLSlsDvLVTS~~ST--- 332 (386)
+.++||||||||++||||+||+|||++||++||+|+||||||||+|++++++||+|||||||||||||+||||+|||
T Consensus 351 ~~~~kaVlVtSL~~~yye~lr~~Y~~~~t~tGe~V~V~QpShe~~Q~~~~~~h~~kAlaEmyLLS~sD~LVTS~~STFGY 430 (476)
T PF03254_consen 351 SQKSKAVLVTSLYSEYYEKLRNMYWEHPTVTGEVVGVHQPSHEEYQQFGDNMHNQKALAEMYLLSLSDVLVTSGWSTFGY 430 (476)
T ss_pred CCceEEEEEEeCCHHHHHHHHHHHhcCCCcCCcEEEEECCCCcccccccccchHHHHHHHHHHHHhccceEecCCCCchh
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ----------eeeeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 046759 333 ----------TMLFKAENDTTPNPACQKDESMEPCFHTPPFYDCRG 368 (386)
Q Consensus 333 ----------WiL~~p~~~~~p~ppC~r~~SmEPCfH~PP~ydC~~ 368 (386)
|||++|+|.++|||||+|++|||||||+||+|||+|
T Consensus 431 VAqgLgGl~PwiL~~~~~~~~~~ppC~r~~S~EPCfh~pp~~dC~a 476 (476)
T PF03254_consen 431 VAQGLGGLRPWILYKPENQTVPDPPCVRAMSMEPCFHAPPFYDCKA 476 (476)
T ss_pred HHHhhcCCCceEEecCcccCCCCCCCcCCCCCCCCCCCCCcCCCCC
Confidence 999999999999999999999999999999999986
No 2
>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation. NodZ is required for the addition of a 2-O-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation. nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3SIX_A 2HLH_A 2HHC_A 3SIW_A 2OCX_A.
Probab=99.27 E-value=1.8e-11 Score=120.93 Aligned_cols=188 Identities=24% Similarity=0.321 Sum_probs=98.1
Q ss_pred cEEEeeccCCcchhHHHHHHHHHHHHHhCcEeeeecCCC------CCCCc---ccc-------------------CCC--
Q 046759 127 KYVVWVAFSGLGNKVLSVTAVLLYALLTNRVMLIDRGED------TVDLF---YEP-------------------FPK-- 176 (386)
Q Consensus 127 kYlVw~~~~GLGNRmLslaSAFLYALLT~RVLLVd~~~d------~~~LF---CEP-------------------FPg-- 176 (386)
||||.-+-.||||++.+|+||--||==|+|.|.||++++ ..++| =|| |||
T Consensus 3 r~~~~r~r~g~gd~l~~la~aw~~a~~~~r~l~idw~~s~~~~~~f~n~f~~ffepv~~i~~~~~~~~d~i~~~~~~g~~ 82 (321)
T PF05830_consen 3 RFVVSRRRTGLGDCLWSLAAAWRYAKRTGRTLVIDWRGSCYLDQPFTNAFPVFFEPVEDIAGVRVICDDRINQFSFPGPF 82 (321)
T ss_dssp -EEEEE--S-HHHHHHHHHHHHHHHHHHT-EEEEE-BT-TT-SSTTSBSHHHHB---SEETTEEEE-SGGGGT----SSE
T ss_pred ceEEEeccCCchhHHHHHHHHHHHHHHhCCeEEEEcCCceecCCcccccCCcccchhhhhcCceeEecchhhhhcCCCCc
Confidence 799999999999999999999999999999999999852 33444 232 444
Q ss_pred --CCCCCCCC-Cccc-------------ccccCCCCCCCcc-------------------------------------cc
Q 046759 177 --TSWIPPLD-FLIT-------------QKFNGFNMKSPES-------------------------------------SL 203 (386)
Q Consensus 177 --sSWlLP~d-FPl~-------------~~~~~~~~~s~~s-------------------------------------yL 203 (386)
+-|-+|.. +-+. ++|+. .++.... |.
T Consensus 83 fp~~w~~p~~~~~~~pd~qi~re~d~l~~lf~~-~~d~~a~~vv~d~c~~~~c~~~aeR~if~slkpR~eIqarID~iy~ 161 (321)
T PF05830_consen 83 FPAWWNKPSIDCVYRPDEQIFRERDELRQLFQS-QEDHEANTVVCDACLMWRCDEEAEREIFSSLKPRPEIQARIDAIYR 161 (321)
T ss_dssp ESGGGGS-GGGGS---HHHHHHHHHHHHHHHHS-SS--S-SEEEE-S--TTSS-HHHHHHHHHHS-B-HHHHHHHHHHHH
T ss_pred ChhHHhCCCcceecCChHHHhhhhHHHHHHhhc-ccccccchhhhHhhcCCcchhHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34666652 3221 11111 1111111 44
Q ss_pred cc-cc-ceeeeEEEEcCCC-----CCChH---HHHHHHHhhhhccCCCCCCcccccccccCCCCceeEEEEeccchHHHH
Q 046759 204 AK-AD-ERIGIQVRVFDTR-----PGPFK---YVMDQILDCTLKQKLLPEVDNDESAIKSSAKPKLKAVLVTSLNSRYYG 273 (386)
Q Consensus 204 a~-Ad-eriGIQvRvF~~~-----~~p~~---~v~dQIl~Ct~~e~LLPev~~~~~~~~~~~~~k~kAVLVtSL~~~Y~e 273 (386)
.. +. -.|||.||-=+++ ..++. ..++||..=..+.+-++ ..|.+.|||+|-.++.-+
T Consensus 162 ehf~g~~~IGVHVRhGngeD~~~h~~~~~D~e~~L~~V~~ai~~ak~~~-------------~~k~~~IFLATDSaeVid 228 (321)
T PF05830_consen 162 EHFAGYSVIGVHVRHGNGEDIMDHAPYWADEERALRQVCTAIDKAKALA-------------PPKPVRIFLATDSAEVID 228 (321)
T ss_dssp HHTTTSEEEEEEE---------------HHHHHHHHHHHHHHHHHHTS---------------SS-EEEEEEES-HHHHH
T ss_pred HHcCCCceEEEEEeccCCcchhccCccccCchHHHHHHHHHHHHHHhcc-------------CCCCeeEEEecCcHHHHH
Confidence 43 22 3799999944332 12222 24666665555544443 235679999999999999
Q ss_pred HHHHhhccccccccceEEEEcCCchhhhhccc-cc-hhHHHHHHHHHHhhcccee-ccCccc
Q 046759 274 ILRNMYWEYSTVTGDMVTVYQPSHEEYQQTEK-SS-HNGKALAEMYLLGITDVLI-TSSWFE 332 (386)
Q Consensus 274 ~Lr~mY~~~~T~tGe~V~V~QPShEe~Q~~~~-~~-Hn~KAlaEmyLLSlsDvLV-TS~~ST 332 (386)
++|..|...-+. ..-||+++.+.=+..+ .. +-.+||+||||||-||+|| -|+-|+
T Consensus 229 ~fr~~FPdiiti----~k~F~~~~~g~Lhs~~~g~~gg~~ALIDM~LLSrCD~LIr~~ptS~ 286 (321)
T PF05830_consen 229 QFRKKFPDIITI----PKQFPASQAGPLHSAAVGIEGGESALIDMYLLSRCDYLIRFPPTSA 286 (321)
T ss_dssp HHHHHSTTEE--------------------HHHHHHHHHHHHHHHHHHTTSSEEEEESTT-G
T ss_pred HHHHHCCCeEEc----ccccCCCCCCcCcccccccchHHHHHHHHHHHHhCCeEEEcCCCch
Confidence 999999864333 3347888865222111 11 2378999999999999999 344444
No 3
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=92.46 E-value=0.5 Score=46.32 Aligned_cols=35 Identities=26% Similarity=0.367 Sum_probs=25.5
Q ss_pred cEEEee--ccCCcchhHHHHHHHHHHHHHhCcEeeee
Q 046759 127 KYVVWV--AFSGLGNKVLSVTAVLLYALLTNRVMLID 161 (386)
Q Consensus 127 kYlVw~--~~~GLGNRmLslaSAFLYALLT~RVLLVd 161 (386)
+++.|. ...||||+|.=.|+....|-+.+|...+.
T Consensus 29 ~~~~~~i~~~g~LGNqmfqya~l~~lak~~~~~~~i~ 65 (298)
T PF01531_consen 29 KYLMSTINLNGRLGNQMFQYASLYGLAKLNGRTAFIP 65 (298)
T ss_pred ccceEEEEEcchHHHHHhHHHHHHHHHHhcCCccccc
Confidence 455553 45789999999998888887777765443
No 4
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.
Probab=84.23 E-value=1.1 Score=43.63 Aligned_cols=68 Identities=22% Similarity=0.227 Sum_probs=35.6
Q ss_pred CceeEEEEeccch----HHHHHHHHhhccccccccceEEEEcCCchhhhhccccchhHHHHHHHHHHhhccceeccCccc
Q 046759 257 PKLKAVLVTSLNS----RYYGILRNMYWEYSTVTGDMVTVYQPSHEEYQQTEKSSHNGKALAEMYLLGITDVLITSSWFE 332 (386)
Q Consensus 257 ~k~kAVLVtSL~~----~Y~e~Lr~mY~~~~T~tGe~V~V~QPShEe~Q~~~~~~Hn~KAlaEmyLLSlsDvLVTS~~ST 332 (386)
.+.+.|+|||-.. ...+.|+++|.+.-+ .+.+ ++++|.+.+.+ ++.|+.|.++++-||+-|-|..||
T Consensus 260 ~~~~~vYiAtd~~~~~~~~l~~l~~~~~~~~~--~~~~----~~~~~~~~~~~---~~~a~vD~~i~~~s~~Figt~~St 330 (351)
T PF10250_consen 260 NNTTVVYIATDEIYGGERRLDPLKNMFPNVVT--KDDL----LSHEELEPLND---DQLAMVDQEICSRSDVFIGTCGST 330 (351)
T ss_dssp HT-SEEEEEESS-----------HHHHHHHHG--GGT------EE--S--------S--HHHHHHHHHHSSEEEE-TT-H
T ss_pred CCCCEEEEecCcccccchhHHHHHHHhhhhEe--cccc----CCHHHhhhccc---cchhHHHHHHHhcCCEEEecCcch
Confidence 3458999999882 123555655553221 1112 34566666655 899999999999999999999999
Q ss_pred e
Q 046759 333 T 333 (386)
Q Consensus 333 W 333 (386)
|
T Consensus 331 f 331 (351)
T PF10250_consen 331 F 331 (351)
T ss_dssp H
T ss_pred h
Confidence 6
No 5
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.
Probab=72.41 E-value=3.1 Score=40.58 Aligned_cols=29 Identities=17% Similarity=0.455 Sum_probs=23.9
Q ss_pred ccCCcchhHHHHHHHHHHHHHhCcEeeee
Q 046759 133 AFSGLGNKVLSVTAVLLYALLTNRVMLID 161 (386)
Q Consensus 133 ~~~GLGNRmLslaSAFLYALLT~RVLLVd 161 (386)
+..|+||+...+..|.+.|-++||+|++-
T Consensus 6 ~~GGfnNQr~~~~~a~~~A~~LnRTLVLP 34 (351)
T PF10250_consen 6 CMGGFNNQRMGFENAVVFAKALNRTLVLP 34 (351)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHT-EEE--
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCEEEcC
Confidence 34699999999999999999999999995
No 6
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=34.81 E-value=78 Score=30.05 Aligned_cols=57 Identities=19% Similarity=0.242 Sum_probs=39.8
Q ss_pred HHHHHHHhhccCCC-CCCCCCCccEEEeec-cCCcchhHHHHHHHHHHHHHhCcEeeeecC
Q 046759 105 YNKTLKKVKSSHSS-SGSAGTDCKYVVWVA-FSGLGNKVLSVTAVLLYALLTNRVMLIDRG 163 (386)
Q Consensus 105 Y~~a~~~L~s~~~~-~~~~~~~CkYlVw~~-~~GLGNRmLslaSAFLYALLT~RVLLVd~~ 163 (386)
|.++++.|++.=.. .. ..++|-|..++ ..|-|.-.+++-=|..+|-.-.||||||..
T Consensus 83 ~~e~~~~l~~~l~~~~~--~~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D 141 (274)
T TIGR03029 83 QVEALRALRSQLMLRWF--SEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDAN 141 (274)
T ss_pred HHHHHHHHHHHhhhhcc--CCCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 45555555553210 11 34577666554 588999999999999999999999999974
No 7
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=30.68 E-value=64 Score=30.92 Aligned_cols=48 Identities=21% Similarity=0.439 Sum_probs=39.0
Q ss_pred cEEEeeccCCcchhHHHHHHHHHHHHHhCcEeeeec--CCCCCCCccccC
Q 046759 127 KYVVWVAFSGLGNKVLSVTAVLLYALLTNRVMLIDR--GEDTVDLFYEPF 174 (386)
Q Consensus 127 kYlVw~~~~GLGNRmLslaSAFLYALLT~RVLLVd~--~~d~~~LFCEPF 174 (386)
|+++..+-.|-|.-.++.+.|..+|-.-.||||||- .....++|--++
T Consensus 1 ~~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~sl~~~~~~~~ 50 (254)
T cd00550 1 RYIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAHSLSDSFNQEF 50 (254)
T ss_pred CEEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCcccHHHHhCCcc
Confidence 577888889999999999999999999999999964 345566665444
No 8
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=29.19 E-value=41 Score=29.84 Aligned_cols=25 Identities=28% Similarity=0.667 Sum_probs=20.5
Q ss_pred hCcEeeeecCCCCCCCccccCCCCCCCCCCCCc
Q 046759 154 TNRVMLIDRGEDTVDLFYEPFPKTSWIPPLDFL 186 (386)
Q Consensus 154 T~RVLLVd~~~d~~~LFCEPFPgsSWlLP~dFP 186 (386)
.+|||||.+.++ |+.|. |-||.+|-
T Consensus 20 ~~~iLLvrR~~~-------p~~g~-WalPGG~v 44 (145)
T COG1051 20 NGRILLVRRANE-------PGAGY-WALPGGFV 44 (145)
T ss_pred CCEEEEEEecCC-------CCCCc-EeCCCccC
Confidence 358999988875 77776 99999986
No 9
>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.
Probab=28.98 E-value=27 Score=36.46 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=15.6
Q ss_pred cccccCC-chhh-----HHHHHHHhH
Q 046759 72 DARILEA-RSFL-----YLIYKLINY 91 (386)
Q Consensus 72 ~d~Llgg-~s~~-----yLvskLR~Y 91 (386)
.|||||| |+-+ -||+++|++
T Consensus 211 GdKlLGGPQaGiI~Gkk~lI~~lk~~ 236 (367)
T PF03841_consen 211 GDKLLGGPQAGIIVGKKELIEKLKKH 236 (367)
T ss_dssp TTSSSSS-S-EEEEEEHHHHHHHHHH
T ss_pred CCCcCCCCCeEEEEeCHHHHHHHhhC
Confidence 6999999 7655 888888864
No 10
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=28.88 E-value=44 Score=33.25 Aligned_cols=50 Identities=16% Similarity=0.289 Sum_probs=40.6
Q ss_pred cEEEeeccCCcchhHHHHHHHHHHHHHhCcEeee--ecCCCCCCCccccCCC
Q 046759 127 KYVVWVAFSGLGNKVLSVTAVLLYALLTNRVMLI--DRGEDTVDLFYEPFPK 176 (386)
Q Consensus 127 kYlVw~~~~GLGNRmLslaSAFLYALLT~RVLLV--d~~~d~~~LFCEPFPg 176 (386)
|+++..+-.|.|.--+|.|.|.-+|---.||||| |+...++++|--.+.+
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~L~d~l~~~~~~ 53 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHSLSDVLGQKLGG 53 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTHHHHHHTS--BS
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCccHHHHhCCcCCC
Confidence 6888899999999999999999999887899999 6677888888765533
No 11
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=27.07 E-value=1.2e+02 Score=26.12 Aligned_cols=42 Identities=24% Similarity=0.252 Sum_probs=30.9
Q ss_pred EeeccCCcchhHHHHHHHHHHHHHhCcEeeeecCCCCCCCcccc-CCCCCCC
Q 046759 130 VWVAFSGLGNKVLSVTAVLLYALLTNRVMLIDRGEDTVDLFYEP-FPKTSWI 180 (386)
Q Consensus 130 Vw~~~~GLGNRmLslaSAFLYALLT~RVLLVd~~~d~~~LFCEP-FPgsSWl 180 (386)
|.-.-.|-|.-.+++.=|...|-.-.|||||| |+| .++.+|+
T Consensus 4 v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD---------~D~~~~~~~~~ 46 (179)
T cd02036 4 VTSGKGGVGKTTTTANLGTALAQLGYKVVLID---------ADLGLRNLDLI 46 (179)
T ss_pred EeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEe---------CCCCCCCchhh
Confidence 44455789998888887777777778999998 345 3666664
No 12
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=26.74 E-value=1.2e+02 Score=25.68 Aligned_cols=35 Identities=29% Similarity=0.479 Sum_probs=29.2
Q ss_pred EEeeccCCcchhHHHHHHHHHHHHHhCcEeeeecC
Q 046759 129 VVWVAFSGLGNKVLSVTAVLLYALLTNRVMLIDRG 163 (386)
Q Consensus 129 lVw~~~~GLGNRmLslaSAFLYALLT~RVLLVd~~ 163 (386)
.||-+..|.|+--+++.=|-..|--..+||+||..
T Consensus 4 ~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~ 38 (157)
T PF13614_consen 4 AVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFD 38 (157)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--
T ss_pred EEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECC
Confidence 46777899999999999999999999999999975
No 13
>PF07136 DUF1385: Protein of unknown function (DUF1385); InterPro: IPR010787 This family contains a number of hypothetical bacterial proteins of unknown function approximately 300 residues in length. Some family members are predicted to be metal-dependent.
Probab=25.55 E-value=28 Score=34.23 Aligned_cols=17 Identities=29% Similarity=0.653 Sum_probs=14.5
Q ss_pred HHHHHHhHHhhhhccCC
Q 046759 84 LIYKLINYEALHKYCGP 100 (386)
Q Consensus 84 LvskLR~YEalHrrCgP 100 (386)
=++.-|+|..+|+|||-
T Consensus 128 tvenvrk~sr~HpRCGT 144 (236)
T PF07136_consen 128 TVENVRKYSRLHPRCGT 144 (236)
T ss_pred CHHHHHhcCCcCCCcch
Confidence 36789999999999973
No 14
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=25.13 E-value=2e+02 Score=27.38 Aligned_cols=76 Identities=12% Similarity=0.127 Sum_probs=52.9
Q ss_pred EEcCCCCCChHHHHHHHHhhhhccCCCCCCcccccccccCCCCceeEEEEeccchHHHHHHHHhhccccccccceEEEE
Q 046759 215 RVFDTRPGPFKYVMDQILDCTLKQKLLPEVDNDESAIKSSAKPKLKAVLVTSLNSRYYGILRNMYWEYSTVTGDMVTVY 293 (386)
Q Consensus 215 RvF~~~~~p~~~v~dQIl~Ct~~e~LLPev~~~~~~~~~~~~~k~kAVLVtSL~~~Y~e~Lr~mY~~~~T~tGe~V~V~ 293 (386)
|++++++.-.+..-++|++...+.+-.|+-....- ..+..+..+|++.++...||..+..-.-+.....|-.+-++
T Consensus 25 r~Ln~~~~vs~~tr~~V~~~a~elgY~p~~~a~~l---~~~~~~~Igvv~~~~~~~~~~~i~~gi~~~a~~~g~~~~~~ 100 (342)
T PRK10014 25 LVLSGKGRISTATGERVNQAIEELGFVRNRQASAL---RGGQSGVIGLIVRDLSAPFYAELTAGLTEALEAQGRMVFLL 100 (342)
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHhCCCcCHHHHhh---ccCCCCEEEEEeCCCccchHHHHHHHHHHHHHHcCCEEEEE
Confidence 44555544457778899999999998886422211 22345678999999988899988877766666667555554
Done!