Query 046759
Match_columns 386
No_of_seqs 127 out of 151
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 06:49:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046759.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046759hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hhc_A NODZ, nodulation fucosy 100.0 2.7E-29 9.1E-34 240.1 11.5 187 124-332 2-288 (330)
2 2de0_X Alpha-(1,6)-fucosyltran 98.8 7.8E-08 2.7E-12 99.5 17.3 224 83-332 106-408 (526)
3 3zy2_A Putative GDP-fucose pro 88.3 0.35 1.2E-05 48.4 4.2 57 258-332 279-335 (362)
4 4ap5_A GDP-fucose protein O-fu 74.7 2.5 8.6E-05 41.4 4.4 64 259-333 304-368 (408)
5 1jlp_A PSI-conotoxin PIIIF; mu 22.8 25 0.00085 22.4 0.7 7 171-177 10-16 (26)
6 3bfv_A CAPA1, CAPB2, membrane 19.0 2.6E+02 0.0087 25.5 7.0 57 105-163 62-120 (271)
7 3la6_A Tyrosine-protein kinase 15.2 3.3E+02 0.011 25.1 6.8 57 105-163 72-130 (286)
8 3kjx_A Transcriptional regulat 15.1 4.1E+02 0.014 23.9 7.4 105 215-330 29-133 (344)
9 3dbi_A Sugar-binding transcrip 14.0 3E+02 0.01 24.7 6.1 106 215-331 22-129 (338)
10 3cio_A ETK, tyrosine-protein k 13.9 3.5E+02 0.012 24.9 6.6 39 125-163 103-142 (299)
No 1
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=99.96 E-value=2.7e-29 Score=240.10 Aligned_cols=187 Identities=20% Similarity=0.223 Sum_probs=131.3
Q ss_pred CCccEEEeeccCCcchhHHHHHHHHHHHHHhCcEeeeecCCCCCCCccccCCCCCCCCCCCCc-cc---------c----
Q 046759 124 TDCKYVVWVAFSGLGNKVLSVTAVLLYALLTNRVMLIDRGEDTVDLFYEPFPKTSWIPPLDFL-IT---------Q---- 189 (386)
Q Consensus 124 ~~CkYlVw~~~~GLGNRmLslaSAFLYALLT~RVLLVd~~~d~~~LFCEPFPgsSWlLP~dFP-l~---------~---- 189 (386)
..||||||....||||||+.+|+||+||++|+|+|+||+.+ ++||+ .|+++|+ |.+|| +. +
T Consensus 2 ~~~r~iv~~~~gGLGNqm~~~a~a~~~A~~t~r~l~vd~~~---~~y~~-~~~~~~f-p~~F~~v~~~~~~~~~~~~~~~ 76 (330)
T 2hhc_A 2 TKERFVISRRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRG---SCYVE-QPFSNAF-PAFFEPVEDIAGVPVICDDRVN 76 (330)
T ss_dssp CCCCEEEEECCSCHHHHHHHHHHHHHHHHHHTCEEEEECBT---CTTCS-STTSBSH-HHHBCCCSEETTEEEECSGGGG
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHHHHHHhCCEEEEECCC---cccCC-CCccccC-cccccchhhhcccceecccccc
Confidence 36999999999999999999999999999999999999987 57996 5778887 77775 10 0
Q ss_pred -----------cccC-----CC--------------------CCCC--------------c---c---------------
Q 046759 190 -----------KFNG-----FN--------------------MKSP--------------E---S--------------- 201 (386)
Q Consensus 190 -----------~~~~-----~~--------------------~~s~--------------~---s--------------- 201 (386)
.+.. +. .+.. . .
T Consensus 77 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~w~~~~~~~~~i~~yl~p~~~i~~ 156 (330)
T 2hhc_A 77 QLSFPGPFFPRWWNRPSIDCINRPDEQIFRERDELTELFQAREDSEANTIVCDACLMWRCSEEAERLIFRNIKLRSEIRA 156 (330)
T ss_dssp TCCCCSSEESGGGGSCGGGGSCCCHHHHHHHHHHHHHHHHSSSCCSCSEEEECSCCTTSSCHHHHHHHHHHSCBCHHHHH
T ss_pred cccCCCCcCchhhhccccccccChHHhhhhhhhhhhhhhhhhhccCCCeEEcccccccchhhhhHHHHHhcCCccHHHHH
Confidence 0000 00 0000 0 0
Q ss_pred --------ccccccceeeeEEEEcCCCCCCh--------HHHHHHHHhhhhccCCCCCCcccccccccCCCCceeEEEEe
Q 046759 202 --------SLAKADERIGIQVRVFDTRPGPF--------KYVMDQILDCTLKQKLLPEVDNDESAIKSSAKPKLKAVLVT 265 (386)
Q Consensus 202 --------yLa~AderiGIQvRvF~~~~~p~--------~~v~dQIl~Ct~~e~LLPev~~~~~~~~~~~~~k~kAVLVt 265 (386)
+++ .+..||||||..+...... ...++++.+|+.+.+.+++. +.++|||+
T Consensus 157 ~i~~~~~~~~~-~~~~VGVHIRrgD~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~-------------~~~~vfva 222 (330)
T 2hhc_A 157 RIDALYEEHFS-GHSIIGVHVRHGNGEDIMEHAPYWADSELALHQVCMAIRKAKALSYP-------------KPVKVFLC 222 (330)
T ss_dssp HHHHHHHHHTT-TSEEEEEEECC------------CHHHHHHHHHHHHHHHHHHTSCCS-------------SCEEEEEE
T ss_pred HHHHHHHHhcc-CCceEEEEEecCCCCcccccCcchHHHhHHHHHHHHHHHHHHhccCc-------------CceEEEEE
Confidence 333 3689999999998543221 22389999999988877642 45799999
Q ss_pred ccchHHHHHHHHhhccccccccceEEEE-cCCchhhhhccccchhHHHHHHHHHHhhcccee-ccCccc
Q 046759 266 SLNSRYYGILRNMYWEYSTVTGDMVTVY-QPSHEEYQQTEKSSHNGKALAEMYLLGITDVLI-TSSWFE 332 (386)
Q Consensus 266 SL~~~Y~e~Lr~mY~~~~T~tGe~V~V~-QPShEe~Q~~~~~~Hn~KAlaEmyLLSlsDvLV-TS~~ST 332 (386)
|..++|.+++|++|++..+.+++.+... ++.|... .+..|+++|++||||||.||.+| |+++||
T Consensus 223 SDd~~~~~~lk~~~~~~~~~~~~~~~~~~~~~h~~~---~~~~~~~~~~~Dm~LLS~cd~~I~~~~~ST 288 (330)
T 2hhc_A 223 TDSAQVLDQVSGLFPDVFAVPKRFQADRAGPLHSAE---MGIEGGASALIDMYLLARCATVIRFPPTSA 288 (330)
T ss_dssp ESCHHHHHHHHHHSTTEECCCC-----------CHH---HHHHHHHHHHHHHHHHTTCSEEEEESTTCG
T ss_pred eCCHHHHHHHHHHcCCcccccceeecccccccccCc---hhhccchHHHHHHHHHHcCCeeEECCCCCC
Confidence 9999999999999998766666533211 2233221 23457899999999999999999 888999
No 2
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=98.83 E-value=7.8e-08 Score=99.53 Aligned_cols=224 Identities=14% Similarity=0.158 Sum_probs=128.0
Q ss_pred HHHHHHHhHHh-hhhccCCCChhHHHHHHHhhccCCCCCCCCCCccEEEee--ccCCcchhHHHHHHHHHHHHHhCcEee
Q 046759 83 YLIYKLINYEA-LHKYCGPKTQSYNKTLKKVKSSHSSSGSAGTDCKYVVWV--AFSGLGNKVLSVTAVLLYALLTNRVML 159 (386)
Q Consensus 83 yLvskLR~YEa-lHrrCgPgT~~Y~~a~~~L~s~~~~~~~~~~~CkYlVw~--~~~GLGNRmLslaSAFLYALLT~RVLL 159 (386)
..+.++--|++ .++.+-|-|+...+-+..+.... +-+.+||||.. ...|+|+.|..++.+|.||+.|+|+|+
T Consensus 106 ~~l~~~~g~~~~r~~~~~~lt~~vq~~i~~~QnP~-----~Cs~aK~Lv~~~~~~~GfGs~lh~l~~~L~~A~~~~Rtli 180 (526)
T 2de0_X 106 YYLSQTDGAGDWREKEAKDLTELVQRRITYLQNPK-----DCSKAKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRTLI 180 (526)
T ss_dssp HHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHCCS-----CGGGSCEEEEECCCSSCHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHhhhchhHHHHHHHHHHHHHHHHHHHHhcCCC-----cCCCCCEEEEEecCCCchHHHHHHHHHHHHHHHhhCCEEE
Confidence 44555555555 44555555555555555443221 12446799985 479999999999999999999999999
Q ss_pred eecCC------CCCCCc------cccCCC---CCCCCCC--------CCccccccc-------------------CCCCC
Q 046759 160 IDRGE------DTVDLF------YEPFPK---TSWIPPL--------DFLITQKFN-------------------GFNMK 197 (386)
Q Consensus 160 Vd~~~------d~~~LF------CEPFPg---sSWlLP~--------dFPl~~~~~-------------------~~~~~ 197 (386)
||.++ .+.++| |.|=|+ ..|--+. ++|..+.+. .+..+
T Consensus 181 idd~~w~Y~~g~w~~yF~P~s~~C~~~~~~~~~~w~~~~~~~~~~vV~~~~i~~~~~~~~~~~~~~P~~~~~~L~~l~~d 260 (526)
T 2de0_X 181 LESQNWRYATGGWETVFRPVSETCTDRSGISTGHWSGEVKDKNVQVVELPIVDSLHPRPPYLPLAVPEDLADRLVRVHGD 260 (526)
T ss_dssp EECTTCSSCTTCGGGTBCCSCSSCCCCCCSCCCBCCCTTGGGGCSEEEECCGGGCSSCCSCCTTCEEGGGHHHHHHHCSC
T ss_pred EECCCCCcCCCCHHHhhhCcCccccCCCccccCCCCCcccCCCcceEEeeccccccccccccccccchhHHHHHHhccCC
Confidence 99853 455555 544232 1232110 001000000 01111
Q ss_pred CCc---------------c--------ccc---cccceeeeEEEEcCC-----CCCChHHHHHHHH---hhhhccCCCCC
Q 046759 198 SPE---------------S--------SLA---KADERIGIQVRVFDT-----RPGPFKYVMDQIL---DCTLKQKLLPE 243 (386)
Q Consensus 198 s~~---------------s--------yLa---~AderiGIQvRvF~~-----~~~p~~~v~dQIl---~Ct~~e~LLPe 243 (386)
+. . ..+ ..+.-|||+||-=+. ...|++++++.+- ....+.
T Consensus 261 -p~~w~~~q~~~yl~rP~~~i~~~I~~~~~~l~~~~piVGVHIRrGDk~~~E~~~~~~~~Y~~~v~~~~~~l~~~----- 334 (526)
T 2de0_X 261 -PAVWWVSQFVKYLIRPQPWLEKEIEEATKKLGFKHPVIGVHVRRTDKVGTEAAFHPIEEYMVHVEEHFQLLARR----- 334 (526)
T ss_dssp -HHHHHHHHHHHHHTCBCHHHHHHHHHHHHHHTCCSSEEEEEECCC-----CCCSCSHHHHHHHHHHHHHHHHTT-----
T ss_pred -cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCEEEEEEeCCCCCccccccCCHHHHHHHHHHHHHHHHhh-----
Confidence 10 0 111 134579999996443 1245555555443 221111
Q ss_pred CcccccccccCCCCceeEEEEeccchHHHHHHHHhhccccccccceEEEEcCCchhhhhccccchhHHHHHHHHHHhhcc
Q 046759 244 VDNDESAIKSSAKPKLKAVLVTSLNSRYYGILRNMYWEYSTVTGDMVTVYQPSHEEYQQTEKSSHNGKALAEMYLLGITD 323 (386)
Q Consensus 244 v~~~~~~~~~~~~~k~kAVLVtSL~~~Y~e~Lr~mY~~~~T~tGe~V~V~QPShEe~Q~~~~~~Hn~KAlaEmyLLSlsD 323 (386)
...+.+.|||+|..++.++.++++|.+.. ..++... .-+.....+.... .-..+++||||||-||
T Consensus 335 -----------~~~~~~~ifLATDDp~v~~e~k~~~p~~~-~~~d~~~--~~~a~~~~R~s~~-~l~~~l~DL~lLs~cd 399 (526)
T 2de0_X 335 -----------MQVDKKRVYLATDDPSLLKEAKTKYPNYE-FISDNSI--SWSAGLHNRYTEN-SLRGVILDIHFLSQAD 399 (526)
T ss_dssp -----------SCCSSCEEEEEESCHHHHHHHHHHCTTSE-EECCCCS--SCSSGGGGGTCCT-HHHHHHHHHHHHHHSS
T ss_pred -----------cCCCCCeEEEEcCCHHHHHHHHHhCCCCE-EecCccc--ccccCccccccHH-HHHHHHHHHHHHhcCC
Confidence 12456799999999999999999998762 1122111 1122111222111 1257999999999999
Q ss_pred ceeccCccc
Q 046759 324 VLITSSWFE 332 (386)
Q Consensus 324 vLVTS~~ST 332 (386)
++|.|..||
T Consensus 400 ~~Vgt~sS~ 408 (526)
T 2de0_X 400 FLVCTFSSQ 408 (526)
T ss_dssp EEEECTTSH
T ss_pred eeecCCCCH
Confidence 999998888
No 3
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=88.29 E-value=0.35 Score=48.37 Aligned_cols=57 Identities=14% Similarity=0.235 Sum_probs=45.3
Q ss_pred ceeEEEEeccchHHHHHHHHhhccccccccceEEEEcCCchhhhhccccchhHHHHHHHHHHhhccceeccCccc
Q 046759 258 KLKAVLVTSLNSRYYGILRNMYWEYSTVTGDMVTVYQPSHEEYQQTEKSSHNGKALAEMYLLGITDVLITSSWFE 332 (386)
Q Consensus 258 k~kAVLVtSL~~~Y~e~Lr~mY~~~~T~tGe~V~V~QPShEe~Q~~~~~~Hn~KAlaEmyLLSlsDvLVTS~~ST 332 (386)
+.++|+|+|-...+.++|++.+.... + .|.-++|. .|..|||+|+-+|+.|-+.+||
T Consensus 279 ~lksVFIATDa~~~~~ELk~~L~~~~-v---~vv~~~pe--------------~a~ID~~I~~~A~~FIGN~~SS 335 (362)
T 3zy2_A 279 GAKSVFVASDKDHMIDEINEALKPYE-I---EAHRQEPD--------------DMYTSLAIMGRADLFVGNCVST 335 (362)
T ss_dssp TCSEEEEEESSCCCHHHHHHHHGGGT-C---CEECCSSC--------------CHHHHHHHHHHSSEEEECTTCH
T ss_pred CCcEEEEecCCHHHHHHHHHHhhccC-c---eEEEeCCc--------------hhHHHHHHHHhCCEeecCcccc
Confidence 57899999999999999999874321 1 12123332 8899999999999999999999
No 4
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=74.73 E-value=2.5 Score=41.43 Aligned_cols=64 Identities=22% Similarity=0.333 Sum_probs=47.9
Q ss_pred eeEEEEeccchHH-HHHHHHhhccccccccceEEEEcCCchhhhhccccchhHHHHHHHHHHhhccceeccCccce
Q 046759 259 LKAVLVTSLNSRY-YGILRNMYWEYSTVTGDMVTVYQPSHEEYQQTEKSSHNGKALAEMYLLGITDVLITSSWFET 333 (386)
Q Consensus 259 ~kAVLVtSL~~~Y-~e~Lr~mY~~~~T~tGe~V~V~QPShEe~Q~~~~~~Hn~KAlaEmyLLSlsDvLVTS~~STW 333 (386)
.+.|+|||-...+ .++|++.... +..+.|..++.....+ +.-|+.|+++++-+|+.|-|..|||
T Consensus 304 ~~~VyiATD~~~~~~~~l~~~~~~--------~~~~~~~~~~~~~~~d---~~~a~idq~Ic~~a~~FiGt~~Stf 368 (408)
T 4ap5_A 304 LDKVFVATDAVRKEYEELKKLLPE--------MVRFEPTWEELELYKD---GGVAIIDQWICAHARFFIGTSVSTF 368 (408)
T ss_dssp CSCEEEEECCCHHHHHHHHHHCTT--------EECCCCCHHHHHHHHH---HHHHHHHHHHHHTEEEEEBCTTCHH
T ss_pred CCEEEEeCCCchhHHHHHHHhCCC--------cEEecCcchhhhccCc---chhhHHHHHHHHhCCeeEeCCcCch
Confidence 4589999985443 5778877532 4456777776655433 2569999999999999999999995
No 5
>1jlp_A PSI-conotoxin PIIIF; multiple disulfide bonds, amidated C-terminus; HET: HYP; NMR {Synthetic} SCOP: j.30.1.4
Probab=22.75 E-value=25 Score=22.41 Aligned_cols=7 Identities=43% Similarity=0.975 Sum_probs=6.0
Q ss_pred cccCCCC
Q 046759 171 YEPFPKT 177 (386)
Q Consensus 171 CEPFPgs 177 (386)
|.||||-
T Consensus 10 crpfpgc 16 (26)
T 1jlp_A 10 CRPFPGC 16 (26)
T ss_dssp CCCCTTT
T ss_pred ccCCCch
Confidence 8999984
No 6
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=19.04 E-value=2.6e+02 Score=25.47 Aligned_cols=57 Identities=12% Similarity=0.300 Sum_probs=38.7
Q ss_pred HHHHHHHhhccCC-CCCCCCCCccEEEeecc-CCcchhHHHHHHHHHHHHHhCcEeeeecC
Q 046759 105 YNKTLKKVKSSHS-SSGSAGTDCKYVVWVAF-SGLGNKVLSVTAVLLYALLTNRVMLIDRG 163 (386)
Q Consensus 105 Y~~a~~~L~s~~~-~~~~~~~~CkYlVw~~~-~GLGNRmLslaSAFLYALLT~RVLLVd~~ 163 (386)
+.++++.|+..-. ... ....|-|+.++. .|-|--.+++.=|...|..-.||||||-.
T Consensus 62 ~~Ea~r~lrt~l~~~~~--~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D 120 (271)
T 3bfv_A 62 ISEKFRGIRSNIMFANP--DSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGD 120 (271)
T ss_dssp HHHHHHHHHHHHHHSST--TCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHHHHHHHHHhhcc--CCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 4555665554210 011 235676666654 78999999988888888877899999864
No 7
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=15.15 E-value=3.3e+02 Score=25.06 Aligned_cols=57 Identities=12% Similarity=0.199 Sum_probs=38.9
Q ss_pred HHHHHHHhhccCC-CCCCCCCCccEEEeec-cCCcchhHHHHHHHHHHHHHhCcEeeeecC
Q 046759 105 YNKTLKKVKSSHS-SSGSAGTDCKYVVWVA-FSGLGNKVLSVTAVLLYALLTNRVMLIDRG 163 (386)
Q Consensus 105 Y~~a~~~L~s~~~-~~~~~~~~CkYlVw~~-~~GLGNRmLslaSAFLYALLT~RVLLVd~~ 163 (386)
+.++++.|+..-. +.. ...+|-|+.++ -.|-|--.+++.=|..+|..-.||||||-.
T Consensus 72 ~~Ea~r~lrt~l~~~~~--~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D 130 (286)
T 3la6_A 72 AIEAIRSLRTSLHFAMM--QAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCD 130 (286)
T ss_dssp HHHHHHHHHHHHHHHST--TTTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred HHHHHHHHHHHHhhhcc--CCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEecc
Confidence 4556666654310 011 33567666655 488999999988888888877899999864
No 8
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=15.14 E-value=4.1e+02 Score=23.89 Aligned_cols=105 Identities=14% Similarity=0.025 Sum_probs=66.4
Q ss_pred EEcCCCCCChHHHHHHHHhhhhccCCCCCCcccccccccCCCCceeEEEEeccchHHHHHHHHhhccccccccceEEEEc
Q 046759 215 RVFDTRPGPFKYVMDQILDCTLKQKLLPEVDNDESAIKSSAKPKLKAVLVTSLNSRYYGILRNMYWEYSTVTGDMVTVYQ 294 (386)
Q Consensus 215 RvF~~~~~p~~~v~dQIl~Ct~~e~LLPev~~~~~~~~~~~~~k~kAVLVtSL~~~Y~e~Lr~mY~~~~T~tGe~V~V~Q 294 (386)
|++++.+.-.+..-++|+....+-+--|+.....- ..+..+..+|++.++...||..+.+-.-+.....|=.+.++.
T Consensus 29 r~Ln~~~~vs~~tr~rV~~~~~~lgY~pn~~a~~l---~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~ 105 (344)
T 3kjx_A 29 RVLRNRGDVSDATRARVLAAAKELGYVPNKIAGAL---ASNRVNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGV 105 (344)
T ss_dssp HHHTTCSCCCHHHHHHHHHHHHHHTCCCCCCCSCS---TTSCCSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEE
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHhCCCCCHHHHHh---hcCCCCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 45565544456778889999998888886533221 123456799999999888888777766666666676665654
Q ss_pred CCchhhhhccccchhHHHHHHHHHHhhccceeccCc
Q 046759 295 PSHEEYQQTEKSSHNGKALAEMYLLGITDVLITSSW 330 (386)
Q Consensus 295 PShEe~Q~~~~~~Hn~KAlaEmyLLSlsDvLVTS~~ 330 (386)
... .. ..+....+..+-.-.|-+|..+.
T Consensus 106 ~~~-~~-------~~~~~~i~~l~~~~vdGiIi~~~ 133 (344)
T 3kjx_A 106 TDY-LP-------EKEEKVLYEMLSWRPSGVIIAGL 133 (344)
T ss_dssp CTT-CH-------HHHHHHHHHHHTTCCSEEEEECS
T ss_pred CCC-CH-------HHHHHHHHHHHhCCCCEEEEECC
Confidence 322 11 12344445555556787766553
No 9
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=14.00 E-value=3e+02 Score=24.71 Aligned_cols=106 Identities=12% Similarity=0.118 Sum_probs=44.5
Q ss_pred EEcCCCCCChHHHHHHHHhhhhccCCCCCCcccccccccCCCCceeEEEEec--cchHHHHHHHHhhccccccccceEEE
Q 046759 215 RVFDTRPGPFKYVMDQILDCTLKQKLLPEVDNDESAIKSSAKPKLKAVLVTS--LNSRYYGILRNMYWEYSTVTGDMVTV 292 (386)
Q Consensus 215 RvF~~~~~p~~~v~dQIl~Ct~~e~LLPev~~~~~~~~~~~~~k~kAVLVtS--L~~~Y~e~Lr~mY~~~~T~tGe~V~V 292 (386)
|++++.+.-.++.-+.|+.-..+-+--|+.....- ..+..+..+|++.. +...|+..+.+-.-+.....|-.+.+
T Consensus 22 rvln~~~~vs~~tr~rV~~~a~~lgY~pn~~a~~l---~~~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~ 98 (338)
T 3dbi_A 22 RVLSGNGYVSQETKDRVFQAVEESGYRPNLLARNL---SAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLL 98 (338)
T ss_dssp -----------------------------------------CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHCCCcCHHHHHh---hhCCCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEE
Confidence 45555433334555667777766666665422211 12345788999999 88888888777766666666766666
Q ss_pred EcCCchhhhhccccchhHHHHHHHHHHhhccceeccCcc
Q 046759 293 YQPSHEEYQQTEKSSHNGKALAEMYLLGITDVLITSSWF 331 (386)
Q Consensus 293 ~QPShEe~Q~~~~~~Hn~KAlaEmyLLSlsDvLVTS~~S 331 (386)
+. ++... ..+....+..+-.-.|-+|..+..
T Consensus 99 ~~-~~~~~-------~~~~~~~~~l~~~~vdgiIi~~~~ 129 (338)
T 3dbi_A 99 AD-GKHSA-------EEERQAIQYLLDLRCDAIMIYPRF 129 (338)
T ss_dssp EE-CTTSH-------HHHHHHHHHHHHTTCSEEEECCSS
T ss_pred Ee-CCCCh-------HHHHHHHHHHHhCCCCEEEEeCCC
Confidence 54 22211 123445566666678887776543
No 10
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=13.91 E-value=3.5e+02 Score=24.90 Aligned_cols=39 Identities=18% Similarity=0.255 Sum_probs=31.6
Q ss_pred CccEEEeecc-CCcchhHHHHHHHHHHHHHhCcEeeeecC
Q 046759 125 DCKYVVWVAF-SGLGNKVLSVTAVLLYALLTNRVMLIDRG 163 (386)
Q Consensus 125 ~CkYlVw~~~-~GLGNRmLslaSAFLYALLT~RVLLVd~~ 163 (386)
..|-|+.++. .|-|--.+++.=|...|..-.||||||..
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D 142 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDAD 142 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECC
Confidence 4676666665 78999999998888889888899999853
Done!