Query 046759
Match_columns 386
No_of_seqs 127 out of 151
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 06:49:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046759.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046759hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ihua1 c.37.1.10 (A:1-296) Ar 31.7 24 0.0017 29.2 4.7 46 126-171 8-55 (296)
2 d1ryaa_ d.113.1.5 (A:) GDP-man 25.1 10 0.00074 29.5 1.0 24 155-186 30-53 (160)
3 d1tjya_ c.93.1.1 (A:) AI-2 rec 22.7 51 0.0037 26.6 5.1 70 256-332 2-71 (316)
4 d1ihua2 c.37.1.10 (A:308-586) 21.6 54 0.004 26.9 5.1 39 125-163 19-57 (279)
5 d1guda_ c.93.1.1 (A:) D-allose 18.5 53 0.0039 26.5 4.3 66 261-332 5-70 (288)
6 d2fmla2 d.113.1.6 (A:3-204) Hy 16.9 19 0.0014 29.9 0.9 25 155-187 54-78 (202)
7 d2fb1a2 d.113.1.6 (A:3-149) Hy 14.1 21 0.0015 27.9 0.5 23 156-186 26-48 (147)
8 d2nzug1 c.93.1.1 (G:58-332) Gl 13.6 1.5E+02 0.011 23.5 5.9 69 256-332 2-70 (275)
9 d2a6ta2 d.113.1.7 (A:95-245) m 13.4 29 0.0021 26.6 1.2 23 154-186 14-36 (151)
10 d2j7ja2 g.37.1.1 (A:29-57) Tra 13.2 35 0.0026 20.9 1.2 13 83-95 16-28 (29)
No 1
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}
Probab=31.72 E-value=24 Score=29.21 Aligned_cols=46 Identities=20% Similarity=0.378 Sum_probs=37.2
Q ss_pred ccEEEeeccCCcchhHHHHHHHHHHHHHhCcEeeeecC--CCCCCCcc
Q 046759 126 CKYVVWVAFSGLGNKVLSVTAVLLYALLTNRVMLIDRG--EDTVDLFY 171 (386)
Q Consensus 126 CkYlVw~~~~GLGNRmLslaSAFLYALLT~RVLLVd~~--~d~~~LFC 171 (386)
=||+++.+-.|-|---+|.+-|..+|-.=.||||||-. ...+++|-
T Consensus 8 p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~Dp~~~l~~~lg 55 (296)
T d1ihua1 8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPASNVGQVFS 55 (296)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHTT
T ss_pred CeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCCCCCCHHHHhC
Confidence 47999888899999999999999999888999999843 34444553
No 2
>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]}
Probab=25.09 E-value=10 Score=29.45 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=18.3
Q ss_pred CcEeeeecCCCCCCCccccCCCCCCCCCCCCc
Q 046759 155 NRVMLIDRGEDTVDLFYEPFPKTSWIPPLDFL 186 (386)
Q Consensus 155 ~RVLLVd~~~d~~~LFCEPFPgsSWlLP~dFP 186 (386)
++|||+.+.+ +|++|. |-+|.++-
T Consensus 30 ~~vLL~kR~~-------~~~~g~-W~lPGG~v 53 (160)
T d1ryaa_ 30 GEFLLGKRTN-------RPAQGY-WFVPGGRV 53 (160)
T ss_dssp SCEEEEEECS-------SSSTTS-EECCEEEC
T ss_pred CeEEEEEeCC-------CCCCCc-Eecccccc
Confidence 4799998864 378885 99998764
No 3
>d1tjya_ c.93.1.1 (A:) AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370]}
Probab=22.67 E-value=51 Score=26.58 Aligned_cols=70 Identities=16% Similarity=0.058 Sum_probs=51.6
Q ss_pred CCceeEEEEeccchHHHHHHHHhhccccccccceEEEEcCCchhhhhccccchhHHHHHHHHHHhhccceeccCccc
Q 046759 256 KPKLKAVLVTSLNSRYYGILRNMYWEYSTVTGDMVTVYQPSHEEYQQTEKSSHNGKALAEMYLLGITDVLITSSWFE 332 (386)
Q Consensus 256 ~~k~kAVLVtSL~~~Y~e~Lr~mY~~~~T~tGe~V~V~QPShEe~Q~~~~~~Hn~KAlaEmyLLSlsDvLVTS~~ST 332 (386)
+.+..+|++.++...|+..+.+---+.....|=-+.+.-|+... .-.+.+..|..+-.-.|.+|.++...
T Consensus 2 ~~~kI~~i~~~~~npf~~~~~~g~~~~a~~~G~~v~~~~~~~~d-------~~~q~~~i~~~i~~~~dgIIi~~~~~ 71 (316)
T d1tjya_ 2 SAERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPTEPS-------VSGQVQLVNNFVNQGYDAIIVSAVSP 71 (316)
T ss_dssp CCCEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSCC-------HHHHHHHHHHHHHTTCSEEEECCSSS
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC-------HHHHHHHHHHHHhcCCCeeeeccccc
Confidence 45778999999999999999888777777777444454465432 12356777777788899999887755
No 4
>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}
Probab=21.57 E-value=54 Score=26.87 Aligned_cols=39 Identities=13% Similarity=0.216 Sum_probs=32.7
Q ss_pred CccEEEeeccCCcchhHHHHHHHHHHHHHhCcEeeeecC
Q 046759 125 DCKYVVWVAFSGLGNKVLSVTAVLLYALLTNRVMLIDRG 163 (386)
Q Consensus 125 ~CkYlVw~~~~GLGNRmLslaSAFLYALLT~RVLLVd~~ 163 (386)
+=|-+|..+-.|-|--.+++.=|...|-.-.|||+||..
T Consensus 19 ~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~D 57 (279)
T d1ihua2 19 EHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD 57 (279)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 356677777799999999998888889888999999943
No 5
>d1guda_ c.93.1.1 (A:) D-allose-binding protein {Escherichia coli [TaxId: 562]}
Probab=18.50 E-value=53 Score=26.54 Aligned_cols=66 Identities=12% Similarity=0.083 Sum_probs=49.6
Q ss_pred EEEEeccchHHHHHHHHhhccccccccceEEEEcCCchhhhhccccchhHHHHHHHHHHhhccceeccCccc
Q 046759 261 AVLVTSLNSRYYGILRNMYWEYSTVTGDMVTVYQPSHEEYQQTEKSSHNGKALAEMYLLGITDVLITSSWFE 332 (386)
Q Consensus 261 AVLVtSL~~~Y~e~Lr~mY~~~~T~tGe~V~V~QPShEe~Q~~~~~~Hn~KAlaEmyLLSlsDvLVTS~~ST 332 (386)
||+|.++...|+..+.+-.-+.....|-.+.++....++ ....+.+..+..+-+=.|.++.++.+.
T Consensus 5 a~i~~~~~npff~~i~~g~~~~a~~~g~~~~i~~~~~~~------d~~~q~~~i~~~i~~~~DgIi~~~~~~ 70 (288)
T d1guda_ 5 AVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEG------DFQSQLQLFEDLSNKNYKGIAFAPLSS 70 (288)
T ss_dssp EEEESCSSSHHHHHHHHHHHHHHHHHTCCEEEEECSSTT------CHHHHHHHHHHHHTSSEEEEEECCSSS
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCC------CHHHHHHHHHHHHhcCCCEEEEecCCc
Confidence 999999999999999988888777778667776544331 123456677777778899998887654
No 6
>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]}
Probab=16.87 E-value=19 Score=29.95 Aligned_cols=25 Identities=36% Similarity=0.725 Sum_probs=19.9
Q ss_pred CcEeeeecCCCCCCCccccCCCCCCCCCCCCcc
Q 046759 155 NRVMLIDRGEDTVDLFYEPFPKTSWIPPLDFLI 187 (386)
Q Consensus 155 ~RVLLVd~~~d~~~LFCEPFPgsSWlLP~dFPl 187 (386)
-+||||.+.+ +|+.|. |-||.+|--
T Consensus 54 l~VLLv~R~~-------~p~~g~-W~lPGG~ve 78 (202)
T d2fmla2 54 LKVLLIQRKG-------HPFRNS-WALPGGFVN 78 (202)
T ss_dssp EEEEEEEECS-------SSSTTC-EECCEEECC
T ss_pred eEEEEEEecC-------CCCCCc-EECCEEeec
Confidence 3799999875 488876 999998863
No 7
>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=14.09 E-value=21 Score=27.90 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=18.1
Q ss_pred cEeeeecCCCCCCCccccCCCCCCCCCCCCc
Q 046759 156 RVMLIDRGEDTVDLFYEPFPKTSWIPPLDFL 186 (386)
Q Consensus 156 RVLLVd~~~d~~~LFCEPFPgsSWlLP~dFP 186 (386)
+||||.+.. +|++| .|.||.++.
T Consensus 26 ~vLLv~R~~-------~p~~g-~W~lPGG~i 48 (147)
T d2fb1a2 26 SLLLLKRNF-------EPAMG-EWSLMGGFV 48 (147)
T ss_dssp EEEEEECSS-------SSSTT-CEECEEEEC
T ss_pred EEEEEEccC-------CCCCC-cEeCcEeee
Confidence 689997754 48887 599999875
No 8
>d2nzug1 c.93.1.1 (G:58-332) Glucose-resistance amylase regulator CcpA, C-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=13.61 E-value=1.5e+02 Score=23.47 Aligned_cols=69 Identities=16% Similarity=0.098 Sum_probs=46.1
Q ss_pred CCceeEEEEeccchHHHHHHHHhhccccccccceEEEEcCCchhhhhccccchhHHHHHHHHHHhhccceeccCccc
Q 046759 256 KPKLKAVLVTSLNSRYYGILRNMYWEYSTVTGDMVTVYQPSHEEYQQTEKSSHNGKALAEMYLLGITDVLITSSWFE 332 (386)
Q Consensus 256 ~~k~kAVLVtSL~~~Y~e~Lr~mY~~~~T~tGe~V~V~QPShEe~Q~~~~~~Hn~KAlaEmyLLSlsDvLVTS~~ST 332 (386)
+++.++|+|.+|...||..+-+---+.....|=.+.++. +.+ ....+++..+..+-.-.|-++..+...
T Consensus 2 kt~tIgvvvp~l~~~f~~~~~~gi~~~~~~~g~~~~~~~-~~~-------~~~~e~~~i~~~~~~~vdgii~~~~~~ 70 (275)
T d2nzug1 2 KTTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSN-SDQ-------NQDKELHLLNNMLGKQVDGIIFMSGNV 70 (275)
T ss_dssp CCSEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE-CTT-------CHHHHHHHHHHHHTTCCSEEEECCSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHHHHHcCCEEEEEE-CCC-------CHHHHHHHHHHHHhcCCceeeccccch
Confidence 457899999999888888777666666666664454443 221 122356667777777789888776544
No 9
>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]}
Probab=13.37 E-value=29 Score=26.60 Aligned_cols=23 Identities=13% Similarity=0.296 Sum_probs=16.6
Q ss_pred hCcEeeeecCCCCCCCccccCCCCCCCCCCCCc
Q 046759 154 TNRVMLIDRGEDTVDLFYEPFPKTSWIPPLDFL 186 (386)
Q Consensus 154 T~RVLLVd~~~d~~~LFCEPFPgsSWlLP~dFP 186 (386)
+++||||.... ++..|-+|.++-
T Consensus 14 ~~kvLLvk~~~----------~~~~W~lPgG~i 36 (151)
T d2a6ta2 14 MQQCVLVKGWK----------ASSGWGFPKGKI 36 (151)
T ss_dssp SSEEEEEEESS----------TTCCCBCSEEEC
T ss_pred CCEEEEEEEeC----------CCCCEECCcccc
Confidence 37899997642 356799998764
No 10
>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}
Probab=13.19 E-value=35 Score=20.90 Aligned_cols=13 Identities=31% Similarity=0.291 Sum_probs=10.8
Q ss_pred HHHHHHHhHHhhh
Q 046759 83 YLIYKLINYEALH 95 (386)
Q Consensus 83 yLvskLR~YEalH 95 (386)
.+-|||+|+|+.|
T Consensus 16 s~ps~lkrhekvh 28 (29)
T d2j7ja2 16 SLPSRLKRHEKVH 28 (29)
T ss_dssp SSHHHHHHHHHHH
T ss_pred cCHHHHhhhhhcc
Confidence 3568999999988
Done!