BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046761
(109 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7SIF3|AIOB_ALCFA Arsenite oxidase subunit AioB OS=Alcaligenes faecalis GN=aioB
PE=1 SV=2
Length = 175
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 49 ANAKK-PTSRNRRRSSYGSSRRSALKKTFAQEQVTFTTPVSSDPCVGI 95
ANA+K P R Y +++ S K A E V+FT P +S PCV +
Sbjct: 32 ANAQKAPADAGRTTLQYPATQVSVAKNLKANEPVSFTYPDTSSPCVAV 79
>sp|Q54EW2|Y9130_DICDI Putative bifunctional amine oxidase DDB_G0291301 OS=Dictyostelium
discoideum GN=DDB_G0291301 PE=1 SV=1
Length = 1080
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 6/99 (6%)
Query: 17 QPLKPPKSSRLSKAKTLTSTIKATSSQPKPNNANAKKPTSRNRRRSSYGSSRRSA----- 71
Q P +S K T+ + T+ P+ A++ PT R + +RS
Sbjct: 426 QVRAPRYTSMHCKPLTIAKSTVPTNQSSNPDGASSTAPTQSLRSLFASRLLQRSVGMEAK 485
Query: 72 LKKTFAQEQVTFTTPVSS-DPCVGIIGGGMARLALSLVL 109
A+ + +T S D VGIIG GMA L +++L
Sbjct: 486 FHSIIAKNRSKRSTKASQKDLTVGIIGAGMAGLYAAMIL 524
>sp|Q7NYT5|AROC_CHRVO Chorismate synthase OS=Chromobacterium violaceum (strain ATCC 12472
/ DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC
9757) GN=aroC PE=3 SV=1
Length = 366
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 51 AKKPTSRNRRRSSYGSSRRSALKKTFAQEQVTFTTPVSSDPCVGIIGGGMARLALSLVL 109
A KPTS S RRS K+ E VT T DPCVGI +A L+LVL
Sbjct: 291 AIKPTS------SIAQPRRSINKQG---EAVTMETHGRHDPCVGIRATPIAEAMLALVL 340
>sp|Q0BG24|AROC_BURCM Chorismate synthase OS=Burkholderia ambifaria (strain ATCC BAA-244
/ AMMD) GN=aroC PE=3 SV=1
Length = 366
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 51 AKKPTSRNRRRSSYGSSRRSALKKTFAQEQVTFTTPVSSDPCVGIIGGGMARLALSLVL 109
A KPTS R + RRS K A E+ T T DPCVGI +A L+LVL
Sbjct: 291 AIKPTSSIR------TPRRSITK---AGEEATVETFGRHDPCVGIRATPIAESMLALVL 340
>sp|P27171|GB_MUHVS Envelope glycoprotein B OS=Murid herpesvirus 1 (strain Smith) GN=gB
PE=3 SV=2
Length = 928
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 31/70 (44%)
Query: 14 LILQPLKPPKSSRLSKAKTLTSTIKATSSQPKPNNANAKKPTSRNRRRSSYGSSRRSALK 73
++ Q LK L K L + AT+S P A T R+RR+ S+ +
Sbjct: 449 VLWQGLKAKSLHNLEKFAALNNVSVATASPPVTTAATENGTTVRSRRKRSFDNLDDVVTD 508
Query: 74 KTFAQEQVTF 83
++AQ Q T+
Sbjct: 509 ISYAQLQFTY 518
>sp|D3FH24|RNC_MYCGH Ribonuclease 3 OS=Mycoplasma gallisepticum (strain R(high / passage
156)) GN=rnc PE=3 SV=1
Length = 655
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 17 QPLKPPKSSRLSKAKT--LTSTIKATSSQPKPNNANAKKPTSRNRRRSSYGSSRRSALKK 74
QP KP S+LSK+ L T TS+QPKP K + +S +KK
Sbjct: 228 QPTKPLNQSKLSKSTIVELPFTPNFTSNQPKPTQKEDSKKVKAKKAENSQPQESNKQVKK 287
>sp|D3FI09|RNC_MYCGF Ribonuclease 3 OS=Mycoplasma gallisepticum (strain F) GN=rnc PE=3
SV=1
Length = 655
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 17 QPLKPPKSSRLSKAKT--LTSTIKATSSQPKPNNANAKKPTSRNRRRSSYGSSRRSALKK 74
QP KP S+LSK+ L T TS+QPKP K + +S +KK
Sbjct: 228 QPTKPLNQSKLSKSTIVELPFTPNFTSNQPKPTQKEDSKKVKAKKAENSQPQESNKQVKK 287
>sp|Q7NAZ2|RNC_MYCGA Ribonuclease 3 OS=Mycoplasma gallisepticum (strain R(low / passage
15 / clone 2)) GN=rnc PE=3 SV=2
Length = 655
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 17 QPLKPPKSSRLSKAKT--LTSTIKATSSQPKPNNANAKKPTSRNRRRSSYGSSRRSALKK 74
QP KP S+LSK+ L T TS+QPKP K + +S +KK
Sbjct: 228 QPTKPLNQSKLSKSTIVELPFTPNFTSNQPKPTQKEDSKKVKAKKAENSQPQESNKQVKK 287
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.122 0.325
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,734,895
Number of Sequences: 539616
Number of extensions: 1004264
Number of successful extensions: 5642
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 98
Number of HSP's that attempted gapping in prelim test: 5455
Number of HSP's gapped (non-prelim): 283
length of query: 109
length of database: 191,569,459
effective HSP length: 77
effective length of query: 32
effective length of database: 150,019,027
effective search space: 4800608864
effective search space used: 4800608864
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)