Query 046761
Match_columns 109
No_of_seqs 103 out of 116
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 04:14:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046761.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046761hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12769 putative oxidoreducta 98.1 1.7E-06 3.7E-11 74.1 3.4 41 69-109 305-346 (654)
2 COG0493 GltD NADPH-dependent g 98.1 1.7E-06 3.7E-11 73.5 2.8 46 64-109 96-142 (457)
3 PRK12831 putative oxidoreducta 98.0 4.3E-06 9.3E-11 69.3 3.5 42 68-109 118-159 (464)
4 PRK12809 putative oxidoreducta 98.0 4.2E-06 9.1E-11 71.9 3.4 41 69-109 288-329 (639)
5 KOG0399 Glutamate synthase [Am 98.0 4E-06 8.7E-11 80.9 2.6 41 69-109 1763-1804(2142)
6 PRK04176 ribulose-1,5-biphosph 97.9 5.6E-06 1.2E-10 64.2 1.8 35 69-109 10-44 (257)
7 PRK12775 putative trifunctiona 97.8 1.2E-05 2.6E-10 73.5 3.4 40 68-109 409-449 (1006)
8 TIGR00292 thiazole biosynthesi 97.8 7.9E-06 1.7E-10 63.6 1.8 35 69-109 6-40 (254)
9 PRK12810 gltD glutamate syntha 97.8 1.6E-05 3.6E-10 65.4 3.4 42 68-109 120-162 (471)
10 PRK12779 putative bifunctional 97.8 9.4E-06 2E-10 73.9 2.2 23 87-109 303-325 (944)
11 PRK07364 2-octaprenyl-6-methox 97.8 1.3E-05 2.8E-10 62.7 2.7 29 81-109 9-37 (415)
12 PRK12771 putative glutamate sy 97.8 2.2E-05 4.8E-10 66.0 3.4 41 68-109 115-156 (564)
13 TIGR01318 gltD_gamma_fam gluta 97.8 2.3E-05 5E-10 64.9 3.4 40 70-109 120-160 (467)
14 PRK12778 putative bifunctional 97.7 2.3E-05 4.9E-10 68.4 3.4 23 87-109 428-450 (752)
15 TIGR03315 Se_ygfK putative sel 97.7 2.3E-05 4.9E-10 72.8 3.3 41 69-109 514-556 (1012)
16 TIGR01316 gltA glutamate synth 97.7 3.6E-05 7.7E-10 63.2 3.4 24 86-109 129-152 (449)
17 PLN02852 ferredoxin-NADP+ redu 97.7 2.4E-05 5.3E-10 67.0 2.5 26 84-109 20-45 (491)
18 PRK11749 dihydropyrimidine deh 97.6 4.4E-05 9.5E-10 62.2 3.4 24 86-109 136-159 (457)
19 TIGR01317 GOGAT_sm_gam glutama 97.6 4.7E-05 1E-09 63.5 3.4 40 70-109 122-162 (485)
20 PRK09853 putative selenate red 97.6 4.4E-05 9.5E-10 71.1 3.3 41 69-109 516-558 (1019)
21 PRK06567 putative bifunctional 97.6 3.7E-05 7.9E-10 72.0 2.2 24 86-109 379-402 (1028)
22 COG1635 THI4 Ribulose 1,5-bisp 97.5 3.2E-05 6.9E-10 63.5 0.8 35 69-109 15-49 (262)
23 PRK12814 putative NADPH-depend 97.4 0.00014 2.9E-09 63.1 3.4 24 86-109 189-212 (652)
24 PTZ00188 adrenodoxin reductase 97.3 0.00015 3.2E-09 63.5 2.5 22 88-109 37-58 (506)
25 PLN02661 Putative thiazole syn 97.3 0.00013 2.7E-09 61.3 2.0 35 69-109 77-111 (357)
26 PRK15317 alkyl hydroperoxide r 97.3 0.00013 2.9E-09 60.8 2.0 22 88-109 209-230 (517)
27 TIGR03140 AhpF alkyl hydropero 97.3 0.00013 2.8E-09 60.9 1.9 22 88-109 210-231 (515)
28 PRK08132 FAD-dependent oxidore 97.2 0.0002 4.3E-09 59.6 2.6 22 88-109 21-42 (547)
29 TIGR01373 soxB sarcosine oxida 97.2 0.00023 5E-09 56.0 2.8 32 78-109 17-49 (407)
30 PLN00093 geranylgeranyl diphos 97.1 0.00028 6E-09 58.8 2.4 21 89-109 38-58 (450)
31 PLN02676 polyamine oxidase 97.1 0.00026 5.5E-09 59.4 2.0 22 88-109 24-45 (487)
32 PRK13977 myosin-cross-reactive 97.1 0.00034 7.5E-09 61.9 2.8 23 87-109 19-41 (576)
33 PLN02463 lycopene beta cyclase 97.1 0.00036 7.8E-09 58.6 2.6 21 89-109 27-47 (447)
34 PRK08294 phenol 2-monooxygenas 97.1 0.00043 9.3E-09 60.1 3.0 23 87-109 29-51 (634)
35 KOG0685 Flavin-containing amin 97.0 0.00032 7E-09 61.8 1.9 22 88-109 19-40 (498)
36 PLN02487 zeta-carotene desatur 97.0 0.00062 1.3E-08 59.3 3.3 19 91-109 76-94 (569)
37 PRK13984 putative oxidoreducta 97.0 0.00063 1.4E-08 57.5 3.3 24 86-109 279-302 (604)
38 PLN02612 phytoene desaturase 96.9 0.00054 1.2E-08 58.5 2.3 23 87-109 90-112 (567)
39 PRK12770 putative glutamate sy 96.8 0.00087 1.9E-08 52.7 2.3 23 87-109 15-37 (352)
40 TIGR03329 Phn_aa_oxid putative 96.8 0.00064 1.4E-08 55.6 1.5 19 91-109 25-43 (460)
41 PLN02927 antheraxanthin epoxid 96.7 0.0008 1.7E-08 60.1 2.1 23 87-109 78-100 (668)
42 PLN02985 squalene monooxygenas 96.7 0.00099 2.2E-08 56.5 2.4 24 86-109 39-62 (514)
43 PTZ00367 squalene epoxidase; P 96.7 0.0011 2.4E-08 57.5 2.8 22 88-109 31-52 (567)
44 PRK01747 mnmC bifunctional tRN 96.7 0.0009 1.9E-08 57.5 2.1 20 90-109 260-279 (662)
45 PRK13748 putative mercuric red 96.7 0.00091 2E-08 55.4 1.9 21 89-109 97-117 (561)
46 PLN02697 lycopene epsilon cycl 96.6 0.0014 2.9E-08 56.7 2.5 20 90-109 108-127 (529)
47 TIGR01372 soxA sarcosine oxida 96.6 0.0011 2.3E-08 60.4 1.8 21 89-109 162-182 (985)
48 PLN02529 lysine-specific histo 96.5 0.0015 3.2E-08 59.0 2.3 22 88-109 158-179 (738)
49 PLN02328 lysine-specific histo 96.4 0.0019 4.1E-08 59.1 2.2 21 89-109 237-257 (808)
50 PRK07573 sdhA succinate dehydr 96.4 0.0025 5.3E-08 55.6 2.7 20 90-109 35-54 (640)
51 PTZ00058 glutathione reductase 96.2 0.0032 6.9E-08 54.6 2.6 21 89-109 47-67 (561)
52 PTZ00139 Succinate dehydrogena 96.2 0.0023 5E-08 55.5 1.8 20 90-109 29-48 (617)
53 PRK07121 hypothetical protein; 96.2 0.0024 5.1E-08 52.7 1.7 20 90-109 20-39 (492)
54 PLN02507 glutathione reductase 96.2 0.0029 6.4E-08 53.1 2.0 22 88-109 23-44 (499)
55 PLN02815 L-aspartate oxidase 96.1 0.0036 7.7E-08 54.5 2.5 19 91-109 30-48 (594)
56 PRK06481 fumarate reductase fl 96.1 0.0036 7.7E-08 52.4 2.3 21 89-109 60-80 (506)
57 PLN00128 Succinate dehydrogena 96.1 0.0036 7.9E-08 54.8 2.3 20 90-109 50-69 (635)
58 PTZ00383 malate:quinone oxidor 95.8 0.006 1.3E-07 52.3 2.3 21 89-109 44-64 (497)
59 KOG2415 Electron transfer flav 95.6 0.0052 1.1E-07 55.1 1.3 24 86-109 72-95 (621)
60 COG1148 HdrA Heterodisulfide r 95.6 0.0058 1.3E-07 55.1 1.6 23 87-109 121-143 (622)
61 PLN03000 amine oxidase 95.6 0.0068 1.5E-07 56.3 2.0 21 89-109 183-203 (881)
62 PLN02546 glutathione reductase 95.4 0.0078 1.7E-07 52.0 1.8 22 88-109 77-98 (558)
63 PLN02464 glycerol-3-phosphate 95.2 0.011 2.3E-07 51.6 1.9 20 90-109 71-90 (627)
64 PF13738 Pyr_redox_3: Pyridine 95.2 0.011 2.5E-07 41.5 1.6 22 88-109 165-186 (203)
65 PTZ00153 lipoamide dehydrogena 94.8 0.028 6E-07 50.1 3.3 20 90-109 116-135 (659)
66 PRK04965 NADH:flavorubredoxin 94.4 0.022 4.8E-07 45.0 1.7 22 88-109 139-160 (377)
67 PTZ00306 NADH-dependent fumara 94.3 0.022 4.8E-07 53.1 1.8 21 88-108 407-427 (1167)
68 COG3634 AhpF Alkyl hydroperoxi 94.3 0.022 4.8E-07 50.4 1.7 25 85-109 349-373 (520)
69 PLN02976 amine oxidase 94.0 0.034 7.5E-07 55.1 2.4 26 84-109 687-712 (1713)
70 PRK09754 phenylpropionate diox 93.8 0.035 7.7E-07 44.4 1.7 22 88-109 142-163 (396)
71 TIGR01292 TRX_reduct thioredox 93.7 0.042 9.1E-07 40.3 1.9 23 87-109 138-160 (300)
72 cd00401 AdoHcyase S-adenosyl-L 93.6 0.059 1.3E-06 45.9 2.9 39 64-108 182-220 (413)
73 TIGR03169 Nterm_to_SelD pyridi 93.3 0.053 1.1E-06 42.2 2.0 21 89-109 144-164 (364)
74 TIGR03385 CoA_CoA_reduc CoA-di 93.2 0.054 1.2E-06 43.4 1.9 21 89-109 136-156 (427)
75 PRK05976 dihydrolipoamide dehy 93.1 0.054 1.2E-06 44.5 1.8 20 90-109 180-199 (472)
76 TIGR03140 AhpF alkyl hydropero 92.9 0.062 1.3E-06 45.1 1.9 22 88-109 350-371 (515)
77 PRK15317 alkyl hydroperoxide r 92.8 0.064 1.4E-06 45.0 1.9 22 88-109 349-370 (517)
78 PRK07251 pyridine nucleotide-d 92.8 0.064 1.4E-06 43.4 1.8 21 89-109 156-176 (438)
79 PRK12770 putative glutamate sy 92.8 0.067 1.5E-06 42.1 1.9 21 89-109 171-191 (352)
80 PLN02494 adenosylhomocysteinas 92.8 0.094 2E-06 46.0 2.9 40 63-108 233-272 (477)
81 PRK12831 putative oxidoreducta 92.6 0.084 1.8E-06 44.1 2.3 23 86-108 277-299 (464)
82 COG0446 HcaD Uncharacterized N 92.6 0.069 1.5E-06 40.5 1.7 20 90-109 136-155 (415)
83 PRK09564 coenzyme A disulfide 92.6 0.073 1.6E-06 42.7 1.9 21 89-109 148-168 (444)
84 KOG1800 Ferredoxin/adrenodoxin 92.5 0.068 1.5E-06 47.2 1.6 21 89-109 19-39 (468)
85 TIGR01350 lipoamide_DH dihydro 92.4 0.077 1.7E-06 42.9 1.8 21 89-109 169-189 (461)
86 TIGR01316 gltA glutamate synth 92.3 0.09 2E-06 43.4 2.1 23 87-109 269-291 (449)
87 PRK12810 gltD glutamate syntha 91.9 0.098 2.1E-06 43.4 1.9 21 87-107 278-298 (471)
88 PRK06912 acoL dihydrolipoamide 91.9 0.096 2.1E-06 42.9 1.8 19 90-108 170-188 (458)
89 PRK11749 dihydropyrimidine deh 91.8 0.12 2.5E-06 42.5 2.1 23 87-109 270-292 (457)
90 KOG3855 Monooxygenase involved 91.7 0.098 2.1E-06 46.4 1.7 20 90-109 36-55 (481)
91 KOG2960 Protein involved in th 91.6 0.064 1.4E-06 45.1 0.5 33 70-109 62-95 (328)
92 PTZ00318 NADH dehydrogenase-li 91.6 0.11 2.3E-06 42.3 1.8 20 90-109 173-192 (424)
93 PRK12778 putative bifunctional 91.6 0.12 2.6E-06 45.5 2.2 22 87-108 567-588 (752)
94 PLN02172 flavin-containing mon 91.5 0.092 2E-06 44.3 1.3 21 89-109 203-223 (461)
95 PRK10262 thioredoxin reductase 91.5 0.12 2.7E-06 39.7 1.9 22 88-109 144-165 (321)
96 TIGR02053 MerA mercuric reduct 91.4 0.12 2.5E-06 42.2 1.8 20 90-109 166-185 (463)
97 PRK13984 putative oxidoreducta 91.4 0.12 2.7E-06 43.9 2.0 21 89-109 417-437 (604)
98 PRK06292 dihydrolipoamide dehy 91.4 0.12 2.6E-06 41.9 1.8 21 89-109 168-188 (460)
99 PRK05249 soluble pyridine nucl 91.1 0.13 2.9E-06 41.6 1.8 21 89-109 174-194 (461)
100 PRK06370 mercuric reductase; V 91.1 0.13 2.9E-06 42.0 1.8 21 89-109 170-190 (463)
101 PF13434 K_oxygenase: L-lysine 90.9 0.1 2.2E-06 42.4 1.0 23 87-109 187-209 (341)
102 PLN02852 ferredoxin-NADP+ redu 90.9 0.15 3.2E-06 44.1 2.1 23 87-109 163-185 (491)
103 PRK06416 dihydrolipoamide dehy 90.8 0.14 3.1E-06 41.5 1.8 20 90-109 172-191 (462)
104 TIGR02374 nitri_red_nirB nitri 90.8 0.14 3.1E-06 45.7 1.8 21 89-109 139-159 (785)
105 PRK13512 coenzyme A disulfide 90.7 0.15 3.2E-06 41.7 1.8 20 90-109 148-167 (438)
106 PRK07818 dihydrolipoamide dehy 90.6 0.15 3.3E-06 41.7 1.8 20 90-109 172-191 (466)
107 PRK13748 putative mercuric red 90.3 0.18 4E-06 42.0 2.0 21 89-109 269-289 (561)
108 TIGR03143 AhpF_homolog putativ 90.2 0.18 3.9E-06 43.0 1.9 22 88-109 141-162 (555)
109 PRK06116 glutathione reductase 90.0 0.19 4E-06 40.9 1.8 21 89-109 166-186 (450)
110 PLN02785 Protein HOTHEAD 89.9 0.24 5.2E-06 43.3 2.5 22 88-109 53-74 (587)
111 PRK06327 dihydrolipoamide dehy 89.8 0.2 4.2E-06 41.5 1.8 20 89-108 182-201 (475)
112 PRK07846 mycothione reductase; 89.8 0.2 4.3E-06 41.5 1.8 20 90-109 166-185 (451)
113 PF00743 FMO-like: Flavin-bind 89.7 0.2 4.2E-06 43.4 1.8 23 87-109 180-202 (531)
114 KOG2495 NADH-dehydrogenase (ub 89.7 0.11 2.4E-06 46.2 0.3 42 68-109 195-237 (491)
115 PRK14694 putative mercuric red 89.7 0.2 4.4E-06 41.2 1.8 20 90-109 178-197 (468)
116 TIGR01421 gluta_reduc_1 glutat 89.7 0.2 4.4E-06 41.3 1.8 20 90-109 166-185 (450)
117 PRK06115 dihydrolipoamide dehy 89.7 0.22 4.8E-06 41.1 2.0 20 89-108 173-192 (466)
118 TIGR01317 GOGAT_sm_gam glutama 89.4 0.27 5.9E-06 41.3 2.4 21 87-107 280-300 (485)
119 TIGR01424 gluta_reduc_2 glutat 89.1 0.24 5.1E-06 40.5 1.8 20 89-108 165-184 (446)
120 PRK12814 putative NADPH-depend 88.6 0.3 6.5E-06 42.7 2.2 22 87-108 320-341 (652)
121 cd05311 NAD_bind_2_malic_enz N 88.6 0.28 6E-06 37.8 1.7 22 88-109 23-44 (226)
122 PRK14989 nitrite reductase sub 88.5 0.26 5.7E-06 45.0 1.8 22 88-109 143-164 (847)
123 TIGR03452 mycothione_red mycot 88.5 0.28 6E-06 40.5 1.8 20 90-109 169-188 (452)
124 PRK06467 dihydrolipoamide dehy 88.4 0.28 6.2E-06 40.7 1.8 20 90-109 174-193 (471)
125 PRK12779 putative bifunctional 88.3 0.28 6.1E-06 45.4 1.9 20 89-108 446-465 (944)
126 PRK14727 putative mercuric red 88.2 0.3 6.4E-06 40.5 1.8 20 90-109 188-207 (479)
127 PRK08010 pyridine nucleotide-d 88.2 0.3 6.6E-06 39.5 1.8 21 89-109 157-177 (441)
128 PRK09424 pntA NAD(P) transhydr 88.1 0.31 6.6E-06 42.7 1.9 21 87-107 162-182 (509)
129 PRK07845 flavoprotein disulfid 87.7 0.33 7.2E-06 40.1 1.8 20 90-109 177-196 (466)
130 KOG1399 Flavin-containing mono 87.7 0.27 5.9E-06 42.2 1.3 23 86-108 182-204 (448)
131 PTZ00052 thioredoxin reductase 87.5 0.34 7.4E-06 40.8 1.8 20 90-109 182-201 (499)
132 TIGR01438 TGR thioredoxin and 87.5 0.35 7.6E-06 40.6 1.8 20 90-109 180-199 (484)
133 cd01080 NAD_bind_m-THF_DH_Cycl 87.4 0.42 9.1E-06 35.8 2.0 21 88-108 42-63 (168)
134 COG2072 TrkA Predicted flavopr 87.3 0.3 6.4E-06 41.0 1.3 23 87-109 172-194 (443)
135 PLN02546 glutathione reductase 87.1 0.38 8.2E-06 41.8 1.9 21 89-109 251-271 (558)
136 PF01262 AlaDh_PNT_C: Alanine 87.0 0.38 8.2E-06 34.8 1.6 20 89-108 19-38 (168)
137 PRK12549 shikimate 5-dehydroge 86.9 0.42 9E-06 37.9 1.9 22 88-109 125-146 (284)
138 TIGR01423 trypano_reduc trypan 86.8 0.39 8.5E-06 40.6 1.8 19 89-107 186-204 (486)
139 COG1252 Ndh NADH dehydrogenase 86.8 0.43 9.3E-06 40.9 2.0 20 90-109 155-174 (405)
140 KOG0042 Glycerol-3-phosphate d 86.7 0.42 9.2E-06 43.9 2.0 32 67-108 54-85 (680)
141 PTZ00058 glutathione reductase 86.6 0.44 9.4E-06 41.6 2.0 19 90-108 237-255 (561)
142 PLN02507 glutathione reductase 86.5 0.41 8.9E-06 40.4 1.8 19 90-108 203-221 (499)
143 TIGR00936 ahcY adenosylhomocys 86.1 0.69 1.5E-05 39.5 2.9 39 64-108 175-213 (406)
144 PF00670 AdoHcyase_NAD: S-aden 85.5 0.57 1.2E-05 35.8 1.9 37 68-109 6-42 (162)
145 PRK12769 putative oxidoreducta 85.2 0.54 1.2E-05 40.8 1.9 20 88-107 466-485 (654)
146 COG3634 AhpF Alkyl hydroperoxi 85.1 0.48 1.1E-05 42.2 1.6 22 87-108 208-229 (520)
147 cd05191 NAD_bind_amino_acid_DH 85.0 0.7 1.5E-05 30.0 1.9 22 88-109 21-42 (86)
148 KOG4716 Thioredoxin reductase 84.9 0.56 1.2E-05 41.7 1.8 23 86-108 15-37 (503)
149 PRK09853 putative selenate red 84.8 0.6 1.3E-05 44.4 2.1 22 87-108 665-686 (1019)
150 PLN02602 lactate dehydrogenase 84.6 0.74 1.6E-05 38.2 2.4 19 91-109 38-56 (350)
151 PRK12775 putative trifunctiona 84.5 0.7 1.5E-05 43.0 2.4 23 86-108 567-589 (1006)
152 TIGR00518 alaDH alanine dehydr 84.3 0.64 1.4E-05 38.3 1.8 20 89-108 166-185 (370)
153 PRK14027 quinate/shikimate deh 83.3 0.76 1.6E-05 36.8 1.8 21 89-109 126-146 (283)
154 TIGR01809 Shik-DH-AROM shikima 83.0 0.78 1.7E-05 36.2 1.8 21 89-109 124-144 (282)
155 cd05213 NAD_bind_Glutamyl_tRNA 82.5 0.82 1.8E-05 36.4 1.7 21 88-108 176-196 (311)
156 COG4716 Myosin-crossreactive a 82.4 0.71 1.5E-05 41.6 1.4 22 88-109 20-41 (587)
157 cd01078 NAD_bind_H4MPT_DH NADP 82.3 0.96 2.1E-05 32.8 1.9 21 89-109 27-48 (194)
158 PRK05562 precorrin-2 dehydroge 82.3 1.1 2.3E-05 35.6 2.3 32 73-104 7-39 (223)
159 PRK06567 putative bifunctional 82.2 1.1 2.4E-05 42.9 2.7 20 88-107 548-567 (1028)
160 PRK11199 tyrA bifunctional cho 81.7 1.2 2.5E-05 36.7 2.4 29 80-108 88-117 (374)
161 PRK12548 shikimate 5-dehydroge 81.6 0.99 2.1E-05 35.7 1.9 22 88-109 124-145 (289)
162 COG1063 Tdh Threonine dehydrog 81.6 1.4 3.1E-05 35.4 2.8 17 90-106 169-185 (350)
163 KOG2665 Predicted FAD-dependen 81.4 0.63 1.4E-05 41.0 0.8 21 89-109 47-67 (453)
164 TIGR03315 Se_ygfK putative sel 81.3 0.96 2.1E-05 42.9 2.0 22 87-108 663-684 (1012)
165 TIGR00507 aroE shikimate 5-deh 81.2 1 2.2E-05 34.8 1.8 22 88-109 115-136 (270)
166 cd01065 NAD_bind_Shikimate_DH 81.0 1.2 2.6E-05 30.5 1.9 21 88-108 17-37 (155)
167 PRK00258 aroE shikimate 5-dehy 80.7 1.1 2.4E-05 34.9 1.9 22 88-109 121-142 (278)
168 PRK00045 hemA glutamyl-tRNA re 80.3 1.1 2.4E-05 37.2 1.9 21 88-108 180-200 (423)
169 KOG2853 Possible oxidoreductas 80.2 1.1 2.3E-05 40.0 1.8 21 89-109 85-105 (509)
170 KOG2844 Dimethylglycine dehydr 79.9 1.5 3.1E-05 41.5 2.6 45 63-109 12-58 (856)
171 PTZ00153 lipoamide dehydrogena 79.9 1.1 2.3E-05 40.2 1.7 19 90-108 312-330 (659)
172 PRK12749 quinate/shikimate deh 78.8 1.4 3E-05 35.3 1.9 22 88-109 122-143 (288)
173 TIGR01318 gltD_gamma_fam gluta 78.8 1.3 2.8E-05 37.1 1.8 21 88-108 280-300 (467)
174 COG0492 TrxB Thioredoxin reduc 78.4 1.5 3.3E-05 35.6 2.0 23 87-109 140-162 (305)
175 PRK12550 shikimate 5-dehydroge 78.2 1.6 3.5E-05 34.8 2.1 20 90-109 122-141 (272)
176 PRK08306 dipicolinate synthase 77.7 1.6 3.4E-05 34.9 1.9 21 89-109 151-171 (296)
177 TIGR01035 hemA glutamyl-tRNA r 77.6 1.5 3.2E-05 36.6 1.8 21 88-108 178-198 (417)
178 PLN02520 bifunctional 3-dehydr 77.2 1.5 3.3E-05 37.9 1.8 22 88-109 377-398 (529)
179 TIGR02853 spore_dpaA dipicolin 77.0 1.6 3.5E-05 34.8 1.8 22 88-109 149-170 (287)
180 TIGR00561 pntA NAD(P) transhyd 76.6 1.7 3.6E-05 38.4 1.9 19 89-107 163-181 (511)
181 COG0281 SfcA Malic enzyme [Ene 76.5 1.4 3.1E-05 38.7 1.5 23 86-108 195-217 (432)
182 KOG1336 Monodehydroascorbate/f 76.3 1.4 3.1E-05 39.1 1.5 21 88-108 72-92 (478)
183 PRK14192 bifunctional 5,10-met 76.2 1.8 3.9E-05 35.0 1.9 23 87-109 156-179 (283)
184 KOG1495 Lactate dehydrogenase 76.1 1.4 3.1E-05 37.7 1.4 19 90-108 20-38 (332)
185 TIGR01372 soxA sarcosine oxida 75.8 1.7 3.7E-05 40.0 1.9 21 89-109 316-336 (985)
186 PLN00106 malate dehydrogenase 75.2 2 4.3E-05 35.3 1.9 21 89-109 17-38 (323)
187 TIGR02356 adenyl_thiF thiazole 75.0 1.5 3.3E-05 32.9 1.1 22 88-109 19-40 (202)
188 TIGR02354 thiF_fam2 thiamine b 74.7 2 4.4E-05 32.5 1.8 21 89-109 20-40 (200)
189 PRK05476 S-adenosyl-L-homocyst 73.9 2.2 4.7E-05 36.7 1.9 21 88-108 210-230 (425)
190 KOG1335 Dihydrolipoamide dehyd 73.6 2 4.4E-05 38.5 1.7 20 89-108 38-57 (506)
191 PTZ00075 Adenosylhomocysteinas 73.3 3.2 6.9E-05 36.6 2.8 23 87-109 251-273 (476)
192 COG0493 GltD NADPH-dependent g 73.0 2.4 5.2E-05 36.5 2.0 23 85-107 257-279 (457)
193 cd01075 NAD_bind_Leu_Phe_Val_D 72.5 2.7 5.8E-05 31.7 1.9 22 88-109 26-47 (200)
194 COG0169 AroE Shikimate 5-dehyd 72.3 2.5 5.5E-05 34.4 1.9 21 89-109 125-145 (283)
195 PF01034 Syndecan: Syndecan do 72.2 1.2 2.6E-05 30.1 0.0 17 93-109 12-28 (64)
196 cd08237 ribitol-5-phosphate_DH 71.8 3.2 7E-05 32.4 2.3 19 88-106 162-180 (341)
197 TIGR01202 bchC 2-desacetyl-2-h 70.9 3.7 8.1E-05 31.6 2.4 19 89-107 144-162 (308)
198 COG1249 Lpd Pyruvate/2-oxoglut 70.7 2.7 5.9E-05 36.2 1.8 20 88-107 171-190 (454)
199 PRK15116 sulfur acceptor prote 70.7 2.9 6.4E-05 33.8 1.9 21 89-109 29-49 (268)
200 cd08230 glucose_DH Glucose deh 70.5 3.4 7.3E-05 32.1 2.1 20 88-107 171-190 (355)
201 PRK05690 molybdopterin biosynt 69.4 3.2 7E-05 32.3 1.8 21 89-109 31-51 (245)
202 KOG2311 NAD/FAD-utilizing prot 69.2 2.6 5.6E-05 38.9 1.4 21 88-108 26-46 (679)
203 cd00762 NAD_bind_malic_enz NAD 69.0 2.9 6.3E-05 34.0 1.5 21 88-108 23-43 (254)
204 cd05312 NAD_bind_1_malic_enz N 68.9 2.9 6.3E-05 34.4 1.5 21 88-108 23-43 (279)
205 TIGR01757 Malate-DH_plant mala 68.8 3.3 7.2E-05 35.2 1.9 22 88-109 42-64 (387)
206 PLN02657 3,8-divinyl protochlo 68.8 11 0.00023 30.8 4.8 26 84-109 54-80 (390)
207 cd00757 ThiF_MoeB_HesA_family 68.4 2.5 5.4E-05 32.1 1.0 21 89-109 20-40 (228)
208 PRK12480 D-lactate dehydrogena 68.2 3.6 7.7E-05 33.5 1.9 22 87-108 143-164 (330)
209 PF02826 2-Hacid_dh_C: D-isome 68.0 3.7 8E-05 29.9 1.8 25 84-108 30-54 (178)
210 PF03949 Malic_M: Malic enzyme 67.8 3.3 7.2E-05 33.7 1.6 19 89-107 24-42 (255)
211 TIGR03366 HpnZ_proposed putati 67.2 5.1 0.00011 30.3 2.4 19 89-107 120-138 (280)
212 PRK12475 thiamine/molybdopteri 66.3 4 8.6E-05 33.5 1.8 21 89-109 23-43 (338)
213 TIGR02355 moeB molybdopterin s 66.3 4 8.6E-05 31.8 1.8 21 89-109 23-43 (240)
214 PRK08644 thiamine biosynthesis 66.0 4.2 9E-05 31.1 1.8 22 88-109 26-47 (212)
215 PRK12809 putative oxidoreducta 66.0 4 8.7E-05 35.6 1.9 21 87-107 448-468 (639)
216 PRK13940 glutamyl-tRNA reducta 66.0 4 8.6E-05 34.6 1.8 22 88-109 179-200 (414)
217 PLN02740 Alcohol dehydrogenase 65.9 5 0.00011 31.9 2.3 22 86-107 195-216 (381)
218 PRK09880 L-idonate 5-dehydroge 65.7 5.5 0.00012 30.9 2.4 19 88-106 168-186 (343)
219 PRK11154 fadJ multifunctional 65.6 3.4 7.3E-05 37.0 1.4 18 90-107 309-326 (708)
220 KOG1298 Squalene monooxygenase 65.5 3.8 8.2E-05 36.8 1.7 22 88-109 43-64 (509)
221 PRK08605 D-lactate dehydrogena 65.5 4.3 9.4E-05 32.8 1.9 22 87-108 143-164 (332)
222 PRK05600 thiamine biosynthesis 65.4 3 6.5E-05 34.7 1.0 22 88-109 39-60 (370)
223 PLN00112 malate dehydrogenase 65.3 4.2 9.1E-05 35.3 1.9 23 87-109 97-120 (444)
224 PRK08328 hypothetical protein; 64.2 4.6 0.0001 31.1 1.8 21 89-109 26-46 (231)
225 PRK00536 speE spermidine synth 63.7 3.1 6.7E-05 33.6 0.7 18 86-103 69-86 (262)
226 PRK11730 fadB multifunctional 63.5 4 8.8E-05 36.6 1.5 17 91-107 314-330 (715)
227 TIGR02437 FadB fatty oxidation 63.3 4.1 9E-05 36.7 1.5 20 89-108 312-331 (714)
228 COG0421 SpeE Spermidine syntha 62.8 5 0.00011 32.7 1.8 18 87-104 74-91 (282)
229 TIGR02440 FadJ fatty oxidation 62.1 4.6 9.9E-05 36.2 1.5 17 91-107 305-321 (699)
230 KOG3851 Sulfide:quinone oxidor 62.1 3.4 7.3E-05 36.6 0.7 24 85-108 34-57 (446)
231 PRK08762 molybdopterin biosynt 61.3 5.2 0.00011 32.7 1.6 22 88-109 133-154 (376)
232 PLN00203 glutamyl-tRNA reducta 61.3 5 0.00011 35.2 1.6 21 88-108 264-284 (519)
233 TIGR03201 dearomat_had 6-hydro 61.3 7 0.00015 30.4 2.3 21 87-107 164-184 (349)
234 cd08281 liver_ADH_like1 Zinc-d 59.6 9.6 0.00021 30.0 2.8 20 87-106 189-208 (371)
235 PLN02695 GDP-D-mannose-3',5'-e 59.4 7.9 0.00017 31.0 2.3 25 85-109 16-41 (370)
236 TIGR02441 fa_ox_alpha_mit fatt 59.4 5.4 0.00012 36.1 1.5 18 90-107 335-352 (737)
237 PRK09310 aroDE bifunctional 3- 59.1 6.4 0.00014 33.7 1.9 21 89-109 331-351 (477)
238 COG2509 Uncharacterized FAD-de 59.0 5.1 0.00011 35.9 1.3 23 87-109 15-37 (486)
239 PRK05597 molybdopterin biosynt 58.9 3.9 8.4E-05 33.6 0.5 21 89-109 27-47 (355)
240 PF01973 MAF_flag10: Protein o 58.0 4.8 0.0001 28.8 0.8 12 90-101 24-35 (170)
241 COG1504 Uncharacterized conser 57.9 2.5 5.4E-05 31.8 -0.7 35 61-103 40-74 (121)
242 PRK06141 ornithine cyclodeamin 57.8 7.5 0.00016 31.1 2.0 21 87-107 122-142 (314)
243 PRK07688 thiamine/molybdopteri 57.1 7.4 0.00016 32.0 1.9 21 89-109 23-43 (339)
244 PLN03129 NADP-dependent malic 56.1 6.4 0.00014 35.7 1.5 21 87-107 318-338 (581)
245 TIGR02818 adh_III_F_hyde S-(hy 55.7 12 0.00026 29.6 2.8 20 87-106 183-202 (368)
246 PLN02712 arogenate dehydrogena 55.7 20 0.00043 32.4 4.4 20 89-108 51-70 (667)
247 TIGR03451 mycoS_dep_FDH mycoth 55.5 12 0.00027 29.1 2.8 21 87-107 174-194 (358)
248 PRK12771 putative glutamate sy 55.2 7.6 0.00017 33.1 1.7 21 87-107 264-284 (564)
249 PRK12862 malic enzyme; Reviewe 55.0 6.3 0.00014 36.4 1.2 22 87-108 190-211 (763)
250 COG0686 Ald Alanine dehydrogen 54.8 6.5 0.00014 34.2 1.2 21 87-107 165-185 (371)
251 PLN02586 probable cinnamyl alc 54.8 12 0.00026 29.7 2.6 20 88-107 182-201 (360)
252 cd08239 THR_DH_like L-threonin 54.7 10 0.00022 28.9 2.2 21 87-107 161-181 (339)
253 PRK14175 bifunctional 5,10-met 53.5 8.1 0.00018 31.7 1.6 22 88-109 156-178 (286)
254 PRK10309 galactitol-1-phosphat 53.4 14 0.00031 28.4 2.8 21 87-107 158-178 (347)
255 cd08301 alcohol_DH_plants Plan 52.7 15 0.00032 28.8 2.8 20 87-106 185-204 (369)
256 KOG0024 Sorbitol dehydrogenase 52.6 12 0.00027 32.4 2.6 19 87-105 167-185 (354)
257 cd08277 liver_alcohol_DH_like 52.3 14 0.00031 29.0 2.7 21 87-107 182-202 (365)
258 cd08300 alcohol_DH_class_III c 52.2 15 0.00033 28.9 2.8 21 87-107 184-204 (368)
259 PRK07232 bifunctional malic en 52.0 8 0.00017 35.8 1.4 23 86-108 181-203 (752)
260 cd01492 Aos1_SUMO Ubiquitin ac 52.0 8.7 0.00019 28.9 1.4 21 89-109 20-40 (197)
261 KOG1238 Glucose dehydrogenase/ 51.9 11 0.00025 34.5 2.3 23 87-109 54-76 (623)
262 PRK12861 malic enzyme; Reviewe 51.9 7 0.00015 36.4 1.0 22 87-108 186-207 (764)
263 PRK09496 trkA potassium transp 51.9 12 0.00027 30.0 2.3 22 88-109 229-250 (453)
264 PF01564 Spermine_synth: Sperm 51.6 9 0.0002 29.9 1.5 20 87-106 74-93 (246)
265 KOG1336 Monodehydroascorbate/f 51.4 9.1 0.0002 34.2 1.6 24 86-109 209-232 (478)
266 PRK14031 glutamate dehydrogena 51.4 10 0.00022 33.1 1.9 22 88-109 226-247 (444)
267 PRK05472 redox-sensing transcr 50.9 16 0.00035 27.4 2.7 19 89-107 83-101 (213)
268 TIGR02822 adh_fam_2 zinc-bindi 50.8 16 0.00035 28.5 2.8 20 87-106 163-182 (329)
269 PRK14982 acyl-ACP reductase; P 50.6 10 0.00023 31.7 1.8 21 88-108 153-174 (340)
270 PRK08291 ectoine utilization p 50.4 12 0.00025 30.1 2.0 20 88-107 130-149 (330)
271 cd05211 NAD_bind_Glu_Leu_Phe_V 50.4 12 0.00025 29.0 1.9 22 88-109 21-42 (217)
272 TIGR02992 ectoine_eutC ectoine 50.3 12 0.00027 30.0 2.1 21 88-108 127-147 (326)
273 COG0373 HemA Glutamyl-tRNA red 50.1 13 0.00028 32.3 2.3 19 88-106 176-195 (414)
274 PLN02827 Alcohol dehydrogenase 49.6 17 0.00037 29.1 2.8 20 87-106 191-210 (378)
275 PRK13243 glyoxylate reductase; 48.3 12 0.00027 30.3 1.9 22 87-108 147-168 (333)
276 PRK08223 hypothetical protein; 48.1 12 0.00026 30.9 1.7 21 89-109 26-46 (287)
277 PRK13529 malate dehydrogenase; 47.6 11 0.00023 34.2 1.5 22 87-108 292-313 (563)
278 PF11312 DUF3115: Protein of u 47.4 24 0.00051 30.0 3.4 21 87-107 84-108 (315)
279 COG1251 NirB NAD(P)H-nitrite r 46.9 10 0.00022 35.9 1.2 22 88-109 143-164 (793)
280 PLN02256 arogenate dehydrogena 46.8 14 0.0003 29.9 1.9 20 88-107 34-53 (304)
281 PRK08618 ornithine cyclodeamin 46.6 14 0.00031 29.6 1.9 20 87-106 124-143 (325)
282 PRK07340 ornithine cyclodeamin 46.5 15 0.00032 29.4 2.0 22 87-108 122-143 (304)
283 cd01485 E1-1_like Ubiquitin ac 46.2 13 0.00028 28.0 1.5 20 89-108 18-37 (198)
284 PTZ00317 NADP-dependent malic 45.9 12 0.00026 33.9 1.5 22 87-108 294-315 (559)
285 cd05188 MDR Medium chain reduc 45.7 18 0.00039 25.5 2.1 21 87-107 132-152 (271)
286 PLN02928 oxidoreductase family 44.6 17 0.00036 29.9 2.1 22 87-108 156-177 (347)
287 cd08238 sorbose_phosphate_red 44.2 22 0.00047 28.7 2.6 20 87-106 173-193 (410)
288 cd08299 alcohol_DH_class_I_II_ 44.0 19 0.00042 28.6 2.3 21 87-107 188-208 (373)
289 cd08264 Zn_ADH_like2 Alcohol d 44.0 20 0.00043 26.9 2.2 21 87-107 160-181 (325)
290 PRK00257 erythronate-4-phospha 43.8 16 0.00035 30.9 1.9 46 63-108 87-134 (381)
291 PLN02178 cinnamyl-alcohol dehy 43.8 22 0.00048 28.7 2.6 20 88-107 177-196 (375)
292 PRK07878 molybdopterin biosynt 42.5 16 0.00035 30.3 1.7 21 89-109 41-61 (392)
293 PRK07411 hypothetical protein; 42.2 8.7 0.00019 32.0 0.1 21 89-109 37-57 (390)
294 PRK14188 bifunctional 5,10-met 42.2 16 0.00035 30.1 1.6 22 88-109 156-178 (296)
295 PRK00676 hemA glutamyl-tRNA re 41.9 17 0.00038 30.6 1.8 20 88-107 172-191 (338)
296 PRK14194 bifunctional 5,10-met 41.9 15 0.00032 30.6 1.4 22 88-109 157-179 (301)
297 PRK14191 bifunctional 5,10-met 41.8 17 0.00038 29.9 1.8 21 88-108 155-176 (285)
298 PRK05225 ketol-acid reductoiso 41.6 15 0.00033 32.9 1.5 24 86-109 32-55 (487)
299 TIGR02819 fdhA_non_GSH formald 41.4 27 0.00058 28.5 2.8 20 87-106 183-202 (393)
300 cd08259 Zn_ADH5 Alcohol dehydr 41.3 23 0.0005 26.2 2.2 22 87-108 160-182 (332)
301 PRK05866 short chain dehydroge 40.2 21 0.00045 27.5 1.8 21 89-109 39-60 (293)
302 cd01076 NAD_bind_1_Glu_DH NAD( 40.1 21 0.00045 27.8 1.9 22 88-109 29-50 (227)
303 PLN02819 lysine-ketoglutarate 40.1 22 0.00048 34.3 2.4 23 86-108 565-587 (1042)
304 PRK10083 putative oxidoreducta 38.9 33 0.00072 25.9 2.8 20 87-106 158-177 (339)
305 cd08285 NADP_ADH NADP(H)-depen 38.8 33 0.00072 26.4 2.8 21 87-107 164-184 (351)
306 PLN02514 cinnamyl-alcohol dehy 38.2 31 0.00067 27.2 2.6 19 88-106 179-197 (357)
307 cd05279 Zn_ADH1 Liver alcohol 38.1 34 0.00073 26.9 2.8 21 87-107 181-201 (365)
308 TIGR02469 CbiT precorrin-6Y C5 38.1 40 0.00086 21.4 2.7 36 66-107 2-37 (124)
309 PRK07574 formate dehydrogenase 37.8 22 0.00048 30.1 1.9 21 88-108 190-210 (385)
310 TIGR00438 rrmJ cell division p 37.6 28 0.0006 25.1 2.1 21 87-107 30-50 (188)
311 PRK06487 glycerate dehydrogena 37.6 26 0.00056 28.3 2.1 22 87-108 145-166 (317)
312 PRK06932 glycerate dehydrogena 37.4 26 0.00056 28.3 2.1 22 87-108 144-165 (314)
313 PRK10124 putative UDP-glucose 37.4 21 0.00045 30.4 1.6 20 89-108 142-161 (463)
314 TIGR02964 xanthine_xdhC xanthi 37.3 32 0.0007 27.1 2.6 21 87-107 97-117 (246)
315 PLN02366 spermidine synthase 37.1 25 0.00054 28.7 2.0 19 87-105 89-107 (308)
316 PRK07877 hypothetical protein; 36.3 18 0.00039 33.3 1.1 21 88-109 105-125 (722)
317 PRK06196 oxidoreductase; Provi 36.3 25 0.00054 27.0 1.8 21 89-109 25-46 (315)
318 cd07367 CarBb CarBb is the B s 36.2 21 0.00046 28.2 1.4 12 89-100 169-180 (268)
319 PRK15469 ghrA bifunctional gly 36.0 26 0.00056 28.4 1.9 22 87-108 133-154 (312)
320 PRK15409 bifunctional glyoxyla 35.2 26 0.00057 28.5 1.8 21 87-107 142-162 (323)
321 cd08274 MDR9 Medium chain dehy 35.2 32 0.00069 26.0 2.2 21 87-107 175-196 (350)
322 PRK09414 glutamate dehydrogena 34.9 27 0.00058 30.5 1.9 22 88-109 230-251 (445)
323 cd05313 NAD_bind_2_Glu_DH NAD( 34.9 28 0.0006 28.2 1.9 23 87-109 35-57 (254)
324 PRK15438 erythronate-4-phospha 34.6 27 0.00059 29.6 1.9 46 63-108 87-134 (378)
325 PLN03139 formate dehydrogenase 34.5 25 0.00055 29.8 1.7 22 87-108 196-217 (386)
326 PRK06128 oxidoreductase; Provi 34.2 26 0.00056 26.8 1.5 21 89-109 54-75 (300)
327 PRK09422 ethanol-active dehydr 33.9 45 0.00097 25.2 2.8 21 87-107 160-180 (338)
328 COG0059 IlvC Ketol-acid reduct 33.8 31 0.00066 29.9 2.1 23 87-109 15-37 (338)
329 PRK06153 hypothetical protein; 33.7 19 0.00042 31.2 0.9 22 88-109 174-195 (393)
330 PRK07985 oxidoreductase; Provi 33.5 27 0.00059 26.7 1.6 21 89-109 48-69 (294)
331 PRK00811 spermidine synthase; 32.8 33 0.00071 27.1 2.0 19 87-105 74-92 (283)
332 cd05284 arabinose_DH_like D-ar 32.7 38 0.00082 25.6 2.2 21 87-107 165-185 (340)
333 cd05289 MDR_like_2 alcohol deh 32.3 37 0.00081 24.4 2.0 21 87-107 142-163 (309)
334 COG1707 ACT domain-containing 32.3 26 0.00056 28.5 1.3 12 89-100 82-93 (218)
335 PLN02306 hydroxypyruvate reduc 32.2 32 0.00069 29.0 1.9 21 87-107 162-182 (386)
336 cd08283 FDH_like_1 Glutathione 32.1 38 0.00082 27.0 2.2 21 87-107 182-202 (386)
337 KOG2017 Molybdopterin synthase 32.0 13 0.00028 33.0 -0.4 38 64-106 45-82 (427)
338 KOG2495 NADH-dehydrogenase (ub 31.9 50 0.0011 29.9 3.1 21 86-106 51-71 (491)
339 PRK08324 short chain dehydroge 31.7 32 0.00069 30.3 1.9 21 89-109 421-442 (681)
340 KOG0069 Glyoxylate/hydroxypyru 31.5 38 0.00082 28.8 2.2 24 86-109 158-181 (336)
341 PLN02712 arogenate dehydrogena 31.3 31 0.00068 31.1 1.8 22 87-108 366-387 (667)
342 PRK10669 putative cation:proto 31.0 38 0.00082 29.0 2.2 20 90-109 417-436 (558)
343 cd08296 CAD_like Cinnamyl alco 30.9 42 0.00092 25.6 2.3 21 87-107 161-181 (333)
344 PRK13581 D-3-phosphoglycerate 30.9 36 0.00078 29.5 2.0 22 87-108 137-158 (526)
345 PRK08261 fabG 3-ketoacyl-(acyl 30.5 35 0.00076 27.7 1.8 21 89-109 209-230 (450)
346 PLN03154 putative allyl alcoho 30.4 51 0.0011 26.0 2.7 20 87-106 156-176 (348)
347 COG3486 IucD Lysine/ornithine 30.2 15 0.00031 32.7 -0.4 20 87-106 184-203 (436)
348 PRK08410 2-hydroxyacid dehydro 30.0 40 0.00086 27.2 2.0 22 87-108 142-163 (311)
349 COG0111 SerA Phosphoglycerate 29.9 36 0.00078 28.0 1.8 22 87-108 139-160 (324)
350 PLN02823 spermine synthase 29.6 41 0.00089 27.9 2.1 18 87-104 101-118 (336)
351 cd07368 PhnC_Bs_like PhnC is a 29.3 33 0.00072 27.4 1.5 13 88-100 177-189 (277)
352 cd08289 MDR_yhfp_like Yhfp put 29.3 55 0.0012 24.4 2.6 20 88-107 145-165 (326)
353 TIGR01327 PGDH D-3-phosphoglyc 29.2 37 0.00081 29.4 1.9 22 87-108 135-156 (525)
354 PRK14189 bifunctional 5,10-met 29.2 29 0.00064 28.6 1.2 21 88-108 156-177 (285)
355 PRK06436 glycerate dehydrogena 29.0 39 0.00084 27.4 1.9 22 86-107 118-139 (303)
356 PLN02735 carbamoyl-phosphate s 28.9 34 0.00074 32.7 1.7 24 78-101 10-34 (1102)
357 PRK11790 D-3-phosphoglycerate 28.9 39 0.00085 28.4 1.9 22 87-108 148-169 (409)
358 cd07373 2A5CPDO_A The alpha su 28.9 31 0.00066 27.3 1.2 12 89-100 165-176 (271)
359 cd07359 PCA_45_Doxase_B_like S 28.8 35 0.00076 26.5 1.5 12 89-100 172-183 (271)
360 PRK14179 bifunctional 5,10-met 28.7 27 0.00058 28.8 0.9 22 88-109 156-178 (284)
361 cd07371 2A5CPDO_AB The alpha a 28.6 30 0.00065 27.3 1.1 11 90-100 163-173 (268)
362 PLN02477 glutamate dehydrogena 28.2 39 0.00085 29.0 1.8 21 88-108 204-224 (410)
363 cd08233 butanediol_DH_like (2R 28.2 63 0.0014 24.8 2.8 21 87-107 170-190 (351)
364 PRK14851 hypothetical protein; 27.9 37 0.0008 31.0 1.7 21 89-109 42-62 (679)
365 PRK09897 hypothetical protein; 27.8 47 0.001 29.3 2.3 20 86-106 188-207 (534)
366 cd08287 FDH_like_ADH3 formalde 27.5 67 0.0014 24.4 2.8 21 86-106 165-185 (345)
367 cd08241 QOR1 Quinone oxidoredu 27.4 53 0.0012 23.6 2.1 21 87-107 137-158 (323)
368 PHA03265 envelope glycoprotein 27.3 1E+02 0.0022 27.4 4.2 19 88-106 346-364 (402)
369 PLN02948 phosphoribosylaminoim 27.2 60 0.0013 28.7 2.8 21 87-107 19-39 (577)
370 cd08242 MDR_like Medium chain 27.0 70 0.0015 24.0 2.8 21 87-107 153-173 (319)
371 PF10294 Methyltransf_16: Puta 26.9 43 0.00094 24.4 1.6 22 86-107 42-65 (173)
372 cd07366 3MGA_Dioxygenase Subun 26.8 36 0.00079 28.4 1.4 13 88-100 233-245 (328)
373 cd01491 Ube1_repeat1 Ubiquitin 26.7 41 0.00089 27.5 1.6 20 89-108 18-37 (286)
374 TIGR02825 B4_12hDH leukotriene 26.6 67 0.0014 24.4 2.7 20 87-106 136-156 (325)
375 cd08269 Zn_ADH9 Alcohol dehydr 26.4 75 0.0016 23.3 2.8 21 87-107 127-147 (312)
376 cd08278 benzyl_alcohol_DH Benz 26.2 70 0.0015 25.1 2.8 20 87-106 184-203 (365)
377 PRK15204 undecaprenyl-phosphat 26.0 42 0.0009 28.7 1.6 19 89-107 145-163 (476)
378 TIGR02632 RhaD_aldol-ADH rhamn 25.9 47 0.001 29.5 1.9 21 89-109 413-434 (676)
379 PLN02702 L-idonate 5-dehydroge 25.9 73 0.0016 24.8 2.8 20 87-106 179-198 (364)
380 cd08255 2-desacetyl-2-hydroxye 25.9 78 0.0017 23.1 2.8 21 86-106 94-114 (277)
381 PRK13365 protocatechuate 4,5-d 25.8 40 0.00087 27.2 1.4 13 88-100 178-190 (279)
382 TIGR00417 speE spermidine synt 25.8 58 0.0013 25.3 2.3 19 87-105 70-88 (270)
383 cd08290 ETR 2-enoyl thioester 25.6 60 0.0013 24.5 2.2 20 87-106 144-164 (341)
384 cd08245 CAD Cinnamyl alcohol d 25.5 61 0.0013 24.3 2.3 20 87-106 160-179 (330)
385 PF00380 Ribosomal_S9: Ribosom 25.4 45 0.00097 24.3 1.5 19 90-108 53-71 (121)
386 PLN02206 UDP-glucuronate decar 25.3 50 0.0011 27.8 1.9 22 88-109 117-139 (442)
387 cd07364 PCA_45_Dioxygenase_B S 25.2 43 0.00092 27.0 1.4 13 88-100 178-190 (277)
388 cd08231 MDR_TM0436_like Hypoth 25.1 57 0.0012 25.2 2.1 20 88-107 176-195 (361)
389 cd08295 double_bond_reductase_ 24.8 76 0.0016 24.3 2.7 20 87-106 149-169 (338)
390 COG1052 LdhA Lactate dehydroge 24.7 57 0.0012 27.0 2.1 24 85-108 141-164 (324)
391 cd07949 PCA_45_Doxase_B_like_1 24.6 43 0.00094 26.9 1.4 13 88-100 177-189 (276)
392 cd05286 QOR2 Quinone oxidoredu 24.6 82 0.0018 22.6 2.7 20 87-106 134-154 (320)
393 cd08267 MDR1 Medium chain dehy 24.4 83 0.0018 22.9 2.7 21 87-107 141-162 (319)
394 cd08284 FDH_like_2 Glutathione 24.4 64 0.0014 24.4 2.2 21 87-107 165-185 (344)
395 COG1064 AdhP Zn-dependent alco 24.3 60 0.0013 27.6 2.2 18 87-104 164-181 (339)
396 PRK13364 protocatechuate 4,5-d 23.7 45 0.00099 27.0 1.4 13 88-100 177-189 (278)
397 PRK11873 arsM arsenite S-adeno 23.3 57 0.0012 24.7 1.7 18 86-104 74-91 (272)
398 PF01965 DJ-1_PfpI: DJ-1/PfpI 23.1 1E+02 0.0022 21.4 2.9 21 89-109 70-90 (147)
399 PRK01581 speE spermidine synth 23.1 73 0.0016 27.5 2.5 16 87-102 148-163 (374)
400 cd07950 Gallate_Doxase_N The N 22.8 50 0.0011 26.5 1.4 14 87-100 177-190 (277)
401 COG1634 Uncharacterized Rossma 22.7 47 0.001 27.3 1.3 16 87-102 49-64 (232)
402 cd08265 Zn_ADH3 Alcohol dehydr 22.6 91 0.002 24.7 2.8 21 86-106 200-220 (384)
403 PRK06701 short chain dehydroge 22.5 63 0.0014 24.7 1.9 21 89-109 45-66 (290)
404 PTZ00188 adrenodoxin reductase 22.5 62 0.0013 29.0 2.0 21 89-109 196-216 (506)
405 COG2344 AT-rich DNA-binding pr 22.5 79 0.0017 25.8 2.5 17 91-107 85-101 (211)
406 cd08286 FDH_like_ADH2 formalde 22.4 94 0.002 23.7 2.8 20 87-106 164-183 (345)
407 cd08288 MDR_yhdh Yhdh putative 22.4 86 0.0019 23.3 2.5 18 89-106 146-164 (324)
408 cd08293 PTGR2 Prostaglandin re 22.3 80 0.0017 24.0 2.4 16 91-106 156-172 (345)
409 PLN03094 Substrate binding sub 22.2 63 0.0014 27.7 2.0 16 59-74 71-86 (370)
410 PF00208 ELFV_dehydrog: Glutam 22.2 58 0.0012 25.7 1.6 23 87-109 29-51 (244)
411 TIGR03025 EPS_sugtrans exopoly 22.0 59 0.0013 26.8 1.7 20 89-108 124-143 (445)
412 cd08234 threonine_DH_like L-th 22.0 80 0.0017 23.7 2.3 20 87-106 157-176 (334)
413 TIGR01369 CPSaseII_lrg carbamo 22.0 56 0.0012 30.8 1.7 14 88-101 552-565 (1050)
414 cd08282 PFDH_like Pseudomonas 22.0 94 0.002 24.5 2.8 21 87-107 174-194 (375)
415 PF11341 DUF3143: Protein of u 21.9 44 0.00095 22.5 0.8 21 57-77 42-62 (63)
416 COG0476 ThiF Dinucleotide-util 21.9 52 0.0011 25.1 1.3 21 89-109 29-49 (254)
417 PLN02253 xanthoxin dehydrogena 21.5 68 0.0015 23.7 1.8 20 89-108 17-37 (280)
418 cd08298 CAD2 Cinnamyl alcohol 21.5 1E+02 0.0022 23.1 2.8 20 87-106 165-184 (329)
419 TIGR01751 crot-CoA-red crotony 21.4 78 0.0017 25.2 2.2 21 87-107 187-208 (398)
420 cd08240 6_hydroxyhexanoate_dh_ 21.4 95 0.0021 23.8 2.6 19 89-107 175-193 (350)
421 TIGR03023 WcaJ_sugtrans Undeca 21.2 64 0.0014 26.6 1.7 20 89-108 127-146 (451)
422 PLN03209 translocon at the inn 21.2 70 0.0015 29.0 2.1 23 87-109 77-100 (576)
423 KOG0405 Pyridine nucleotide-di 21.1 26 0.00057 31.4 -0.5 22 88-109 187-208 (478)
424 cd08253 zeta_crystallin Zeta-c 21.0 84 0.0018 22.6 2.1 21 87-107 142-163 (325)
425 cd07372 2A5CPDO_B The beta sub 20.9 52 0.0011 26.8 1.2 11 89-99 179-189 (294)
426 cd07369 PydA_Rs_like PydA is a 20.8 57 0.0012 27.3 1.4 13 88-100 177-189 (329)
427 TIGR03022 WbaP_sugtrans Undeca 20.8 65 0.0014 26.6 1.7 19 89-107 124-142 (456)
428 PRK13366 protocatechuate 4,5-d 20.8 59 0.0013 26.5 1.5 13 88-100 178-190 (284)
429 cd08246 crotonyl_coA_red croto 20.7 97 0.0021 24.4 2.6 20 87-106 191-211 (393)
430 cd08266 Zn_ADH_like1 Alcohol d 20.5 89 0.0019 22.9 2.2 21 87-107 164-185 (342)
431 cd08268 MDR2 Medium chain dehy 20.3 89 0.0019 22.6 2.2 21 87-107 142-163 (328)
432 cd08243 quinone_oxidoreductase 20.2 1E+02 0.0023 22.4 2.5 20 87-106 140-160 (320)
433 PLN02735 carbamoyl-phosphate s 20.1 66 0.0014 30.8 1.8 17 87-103 571-587 (1102)
434 PLN02968 Probable N-acetyl-gam 20.1 70 0.0015 26.9 1.8 17 89-105 37-54 (381)
435 COG0499 SAM1 S-adenosylhomocys 20.1 66 0.0014 28.6 1.7 41 63-109 188-228 (420)
No 1
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.13 E-value=1.7e-06 Score=74.11 Aligned_cols=41 Identities=34% Similarity=0.357 Sum_probs=30.7
Q ss_pred hhhhhhhhhc-cccccCCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761 69 RSALKKTFAQ-EQVTFTTPVSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 69 ~sitdk~F~q-~qv~f~~~~~~~kkVAVIGgGpAGLacA~eL 109 (109)
|-+.|+.++. +.........++++|||||||||||+||+.|
T Consensus 305 r~~~d~~~~~~~~~~~~~~~~~~~~VaIIGaGpAGLsaA~~L 346 (654)
T PRK12769 305 RYISDQALAKGWRPDLSQVTKSDKRVAIIGAGPAGLACADVL 346 (654)
T ss_pred HHHHHHHHHhCCCCCCcccccCCCEEEEECCCHHHHHHHHHH
Confidence 4577877765 4433333346889999999999999999875
No 2
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=98.11 E-value=1.7e-06 Score=73.46 Aligned_cols=46 Identities=24% Similarity=0.112 Sum_probs=38.5
Q ss_pred CCccchhhhhhhhhc-cccccCCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761 64 YGSSRRSALKKTFAQ-EQVTFTTPVSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 64 ~~~sr~sitdk~F~q-~qv~f~~~~~~~kkVAVIGgGpAGLacA~eL 109 (109)
|+-=-+.+.|+.|+. |.........++++|||||||||||+||..|
T Consensus 96 i~~le~~i~d~~~~~g~i~~~~~~~~tg~~VaviGaGPAGl~~a~~L 142 (457)
T COG0493 96 IGALERAIGDKADREGWIPGELPGSRTGKKVAVIGAGPAGLAAADDL 142 (457)
T ss_pred hhhHHHHHhhHHHHhCCCCCCCCCCCCCCEEEEECCCchHhhhHHHH
Confidence 555567899999987 6666656688889999999999999999876
No 3
>PRK12831 putative oxidoreductase; Provisional
Probab=98.02 E-value=4.3e-06 Score=69.28 Aligned_cols=42 Identities=21% Similarity=0.066 Sum_probs=30.3
Q ss_pred chhhhhhhhhccccccCCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761 68 RRSALKKTFAQEQVTFTTPVSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 68 r~sitdk~F~q~qv~f~~~~~~~kkVAVIGgGpAGLacA~eL 109 (109)
.|-+.|+.++...........++++|+|||||||||+||++|
T Consensus 118 ~r~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpAGl~aA~~l 159 (464)
T PRK12831 118 ERFVADWARENGIDLSETEEKKGKKVAVIGSGPAGLTCAGDL 159 (464)
T ss_pred HHHHHHHHHHcCCCCCCCcCCCCCEEEEECcCHHHHHHHHHH
Confidence 345667666552222234467899999999999999999865
No 4
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.01 E-value=4.2e-06 Score=71.88 Aligned_cols=41 Identities=24% Similarity=0.264 Sum_probs=31.1
Q ss_pred hhhhhhhhhc-cccccCCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761 69 RSALKKTFAQ-EQVTFTTPVSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 69 ~sitdk~F~q-~qv~f~~~~~~~kkVAVIGgGpAGLacA~eL 109 (109)
|-+.|+.++. |........+++++|+|||||||||+||++|
T Consensus 288 r~~~d~~~~~~~~~~~~~~~~~~kkVaIIG~GpaGl~aA~~L 329 (639)
T PRK12809 288 RYITDTALAMGWRPDVSKVVPRSEKVAVIGAGPAGLGCADIL 329 (639)
T ss_pred HHHHHHHHHhCCCCCCCcccCCCCEEEEECcCHHHHHHHHHH
Confidence 4567777765 5543334456799999999999999999875
No 5
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.96 E-value=4e-06 Score=80.92 Aligned_cols=41 Identities=27% Similarity=0.284 Sum_probs=37.3
Q ss_pred hhhhhhhhhc-cccccCCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761 69 RSALKKTFAQ-EQVTFTTPVSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 69 ~sitdk~F~q-~qv~f~~~~~~~kkVAVIGgGpAGLacA~eL 109 (109)
+-|+|+.|.+ |-++-+....++++|||||+|||||+||..|
T Consensus 1763 ~aiid~af~egwm~p~pp~~rtg~~vaiigsgpaglaaadql 1804 (2142)
T KOG0399|consen 1763 CAIIDKAFEEGWMKPCPPAFRTGKRVAIIGSGPAGLAAADQL 1804 (2142)
T ss_pred hHHHHHHHHhcCCccCCcccccCcEEEEEccCchhhhHHHHH
Confidence 4689999998 9988888899999999999999999999765
No 6
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=97.89 E-value=5.6e-06 Score=64.21 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=26.9
Q ss_pred hhhhhhhhhccccccCCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761 69 RSALKKTFAQEQVTFTTPVSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 69 ~sitdk~F~q~qv~f~~~~~~~kkVAVIGgGpAGLacA~eL 109 (109)
|-|++.+|++..-. ...+|+|||||||||+||++|
T Consensus 10 ~~~~~~~~~~~~~~------~~~DVvIVGgGpAGl~AA~~l 44 (257)
T PRK04176 10 RAIVEEYFEKLLDY------LEVDVAIVGAGPSGLTAAYYL 44 (257)
T ss_pred HHHHHHHHHHHHHh------ccCCEEEECccHHHHHHHHHH
Confidence 45788888884321 235799999999999999875
No 7
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.84 E-value=1.2e-05 Score=73.48 Aligned_cols=40 Identities=25% Similarity=0.076 Sum_probs=29.5
Q ss_pred chhhhhhhhhc-cccccCCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761 68 RRSALKKTFAQ-EQVTFTTPVSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 68 r~sitdk~F~q-~qv~f~~~~~~~kkVAVIGgGpAGLacA~eL 109 (109)
.|-+.|+.++. +. .+...+++++|||||||||||+||++|
T Consensus 409 er~~~d~~~~~~~~--~~~~~~~~~kVaIIG~GPAGLsaA~~L 449 (1006)
T PRK12775 409 ERFVGDNARAKPVK--PPRFSKKLGKVAICGSGPAGLAAAADL 449 (1006)
T ss_pred HHHHHHHHHHcCCC--CCCCCCCCCEEEEECCCHHHHHHHHHH
Confidence 35667776654 33 233345789999999999999999875
No 8
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=97.83 E-value=7.9e-06 Score=63.57 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=27.4
Q ss_pred hhhhhhhhhccccccCCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761 69 RSALKKTFAQEQVTFTTPVSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 69 ~sitdk~F~q~qv~f~~~~~~~kkVAVIGgGpAGLacA~eL 109 (109)
|-|++.+|++..-. .+.+|+|||||||||+||++|
T Consensus 6 ~~~~~~~~~~~~~~------~~~DVvIVGgGpAGL~aA~~l 40 (254)
T TIGR00292 6 RAIVERYFEDLLDY------AESDVIIVGAGPSGLTAAYYL 40 (254)
T ss_pred HHHHHHHHHHHHHh------cCCCEEEECCCHHHHHHHHHH
Confidence 45788889884421 355799999999999999865
No 9
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.81 E-value=1.6e-05 Score=65.40 Aligned_cols=42 Identities=24% Similarity=0.246 Sum_probs=29.9
Q ss_pred chhhhhhhhhccc-cccCCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761 68 RRSALKKTFAQEQ-VTFTTPVSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 68 r~sitdk~F~q~q-v~f~~~~~~~kkVAVIGgGpAGLacA~eL 109 (109)
.|.+.|+.+.... .+.....+.+++|+|||||+|||+||..|
T Consensus 120 ~r~~~~~~~~~~~~~~~~~~~~~~~~VvIIGaGpAGl~aA~~l 162 (471)
T PRK12810 120 ERYIIDKAFEEGWVKPDPPVKRTGKKVAVVGSGPAGLAAADQL 162 (471)
T ss_pred HHHHHHHHHHcCCCCCCCCcCCCCCEEEEECcCHHHHHHHHHH
Confidence 4566677665522 23333456788999999999999999865
No 10
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.81 E-value=9.4e-06 Score=73.92 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=21.0
Q ss_pred CCCCCcEEEEcccHHHHHhhhcC
Q 046761 87 VSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~eL 109 (109)
.+++|+|||||||||||+||++|
T Consensus 303 ~~~gkkVaVIGsGPAGLsaA~~L 325 (944)
T PRK12779 303 AAVKPPIAVVGSGPSGLINAYLL 325 (944)
T ss_pred cCCCCeEEEECCCHHHHHHHHHH
Confidence 46799999999999999999875
No 11
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.81 E-value=1.3e-05 Score=62.68 Aligned_cols=29 Identities=34% Similarity=0.474 Sum_probs=22.9
Q ss_pred cccCCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761 81 VTFTTPVSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 81 v~f~~~~~~~kkVAVIGgGpAGLacA~eL 109 (109)
+.++...+...+|+|||||||||+||+.|
T Consensus 9 ~~~~~~~~~~~dV~IvGaG~aGl~~A~~L 37 (415)
T PRK07364 9 PTLPSTRSLTYDVAIVGGGIVGLTLAAAL 37 (415)
T ss_pred CCCCCCCccccCEEEECcCHHHHHHHHHH
Confidence 33444455678999999999999999875
No 12
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.76 E-value=2.2e-05 Score=66.02 Aligned_cols=41 Identities=24% Similarity=0.266 Sum_probs=29.1
Q ss_pred chhhhhhhhhc-cccccCCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761 68 RRSALKKTFAQ-EQVTFTTPVSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 68 r~sitdk~F~q-~qv~f~~~~~~~kkVAVIGgGpAGLacA~eL 109 (109)
+|.+.|+.+.. +.++ ......+++|+|||+||+||+||+.|
T Consensus 115 ~r~~~~~~~~~~~~~~-~~~~~~g~~V~VIGaGpaGL~aA~~l 156 (564)
T PRK12771 115 ERFLGDYAIANGWKFP-APAPDTGKRVAVIGGGPAGLSAAYHL 156 (564)
T ss_pred HHHHHHHHHHcCCCCC-CCCCCCCCEEEEECCCHHHHHHHHHH
Confidence 45555665554 3322 22367899999999999999999864
No 13
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.75 E-value=2.3e-05 Score=64.92 Aligned_cols=40 Identities=25% Similarity=0.275 Sum_probs=27.7
Q ss_pred hhhhhhhhc-cccccCCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761 70 SALKKTFAQ-EQVTFTTPVSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 70 sitdk~F~q-~qv~f~~~~~~~kkVAVIGgGpAGLacA~eL 109 (109)
-+.|+.+.. ++.......+++++|+|||||||||+||..|
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpaGl~aA~~l 160 (467)
T TIGR01318 120 YITDTALAMGWRPDLSHVVPTGKRVAVIGAGPAGLACADIL 160 (467)
T ss_pred HHHHHHHHhCCCCCCCCcCCCCCeEEEECCCHHHHHHHHHH
Confidence 345655543 3333333345889999999999999999864
No 14
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.74 E-value=2.3e-05 Score=68.37 Aligned_cols=23 Identities=30% Similarity=0.353 Sum_probs=20.8
Q ss_pred CCCCCcEEEEcccHHHHHhhhcC
Q 046761 87 VSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~eL 109 (109)
..++++|+|||||||||+||.+|
T Consensus 428 ~~~~~~V~IIGaGpAGl~aA~~l 450 (752)
T PRK12778 428 EKNGKKVAVIGSGPAGLSFAGDL 450 (752)
T ss_pred CCCCCEEEEECcCHHHHHHHHHH
Confidence 56789999999999999999875
No 15
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.72 E-value=2.3e-05 Score=72.75 Aligned_cols=41 Identities=27% Similarity=0.281 Sum_probs=27.2
Q ss_pred hhhhhhhhhccc--cccCCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761 69 RSALKKTFAQEQ--VTFTTPVSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 69 ~sitdk~F~q~q--v~f~~~~~~~kkVAVIGgGpAGLacA~eL 109 (109)
|-+.|+.|.... +..+.+..++++|||||||||||+||+.|
T Consensus 514 r~a~d~~~~~~~~~~~~~~~~~~~kkVaIIGGGPAGLSAA~~L 556 (1012)
T TIGR03315 514 KVAAEKGYDEYKTRWHKPQGKSSAHKVAVIGAGPAGLSAGYFL 556 (1012)
T ss_pred HHHHhhHHHhcCccCCCCCCCCCCCcEEEECCCHHHHHHHHHH
Confidence 345555544322 11122345678999999999999999875
No 16
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.67 E-value=3.6e-05 Score=63.22 Aligned_cols=24 Identities=38% Similarity=0.403 Sum_probs=21.1
Q ss_pred CCCCCCcEEEEcccHHHHHhhhcC
Q 046761 86 PVSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 86 ~~~~~kkVAVIGgGpAGLacA~eL 109 (109)
...++++|+|||||+|||+||..|
T Consensus 129 ~~~~~~~V~IIG~G~aGl~aA~~l 152 (449)
T TIGR01316 129 APSTHKKVAVIGAGPAGLACASEL 152 (449)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHH
Confidence 456789999999999999999865
No 17
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.67 E-value=2.4e-05 Score=66.96 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=21.9
Q ss_pred CCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761 84 TTPVSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 84 ~~~~~~~kkVAVIGgGpAGLacA~eL 109 (109)
+...+.+++|||||||||||.||..|
T Consensus 20 ~~~~~~~~~VaIVGaGPAGl~AA~~L 45 (491)
T PLN02852 20 SSSTSEPLHVCVVGSGPAGFYTADKL 45 (491)
T ss_pred CCCCCCCCcEEEECccHHHHHHHHHH
Confidence 34556788999999999999999865
No 18
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.64 E-value=4.4e-05 Score=62.23 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=20.9
Q ss_pred CCCCCCcEEEEcccHHHHHhhhcC
Q 046761 86 PVSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 86 ~~~~~kkVAVIGgGpAGLacA~eL 109 (109)
....+++|+|||||+|||+||+.|
T Consensus 136 ~~~~~~~VvIIGgGpaGl~aA~~l 159 (457)
T PRK11749 136 APKTGKKVAVIGAGPAGLTAAHRL 159 (457)
T ss_pred CccCCCcEEEECCCHHHHHHHHHH
Confidence 456789999999999999999864
No 19
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.62 E-value=4.7e-05 Score=63.48 Aligned_cols=40 Identities=23% Similarity=0.213 Sum_probs=27.2
Q ss_pred hhhhhhhhc-cccccCCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761 70 SALKKTFAQ-EQVTFTTPVSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 70 sitdk~F~q-~qv~f~~~~~~~kkVAVIGgGpAGLacA~eL 109 (109)
-++|+.+.. +..........+++|+|||||+|||+||.+|
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~V~IIGaG~aGl~aA~~L 162 (485)
T TIGR01317 122 IIIDKGFQEGWVQPRPPSKRTGKKVAVVGSGPAGLAAADQL 162 (485)
T ss_pred HHHHHHHHcCCCCCCCCcCCCCCEEEEECCcHHHHHHHHHH
Confidence 345555543 3222223345678999999999999999865
No 20
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.60 E-value=4.4e-05 Score=71.11 Aligned_cols=41 Identities=29% Similarity=0.426 Sum_probs=27.8
Q ss_pred hhhhhhhhhcccccc--CCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761 69 RSALKKTFAQEQVTF--TTPVSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 69 ~sitdk~F~q~qv~f--~~~~~~~kkVAVIGgGpAGLacA~eL 109 (109)
|-+.|+.|......+ +...+++++|||||||||||+||+.|
T Consensus 516 r~a~d~~~~~~~~~~~~~~~~~tgKkVaIIGgGPAGLsAA~~L 558 (1019)
T PRK09853 516 KVALEKGWDEYKQRWHKPAGIGSRKKVAVIGAGPAGLAAAYFL 558 (1019)
T ss_pred HHHHhhHHHhcccccCCCCccCCCCcEEEECCCHHHHHHHHHH
Confidence 345555554322121 22356899999999999999999875
No 21
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.56 E-value=3.7e-05 Score=71.96 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=21.6
Q ss_pred CCCCCCcEEEEcccHHHHHhhhcC
Q 046761 86 PVSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 86 ~~~~~kkVAVIGgGpAGLacA~eL 109 (109)
..+++++|+|||||||||+||+.|
T Consensus 379 ~~~tgKKVaVVGaGPAGLsAA~~L 402 (1028)
T PRK06567 379 KEPTNYNILVTGLGPAGFSLSYYL 402 (1028)
T ss_pred CCCCCCeEEEECcCHHHHHHHHHH
Confidence 356899999999999999999976
No 22
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=97.50 E-value=3.2e-05 Score=63.53 Aligned_cols=35 Identities=23% Similarity=0.259 Sum_probs=26.8
Q ss_pred hhhhhhhhhccccccCCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761 69 RSALKKTFAQEQVTFTTPVSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 69 ~sitdk~F~q~qv~f~~~~~~~kkVAVIGgGpAGLacA~eL 109 (109)
|-|++.+|..+.- -..-.|+||||||+||+||++|
T Consensus 15 raI~~~~~~~l~~------~~esDViIVGaGPsGLtAAyyL 49 (262)
T COG1635 15 RAITERYFEDLLD------YLESDVIIVGAGPSGLTAAYYL 49 (262)
T ss_pred HHHHHHHHHHHHh------hhhccEEEECcCcchHHHHHHH
Confidence 4578888887331 1234699999999999999986
No 23
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.39 E-value=0.00014 Score=63.12 Aligned_cols=24 Identities=38% Similarity=0.411 Sum_probs=20.8
Q ss_pred CCCCCCcEEEEcccHHHHHhhhcC
Q 046761 86 PVSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 86 ~~~~~kkVAVIGgGpAGLacA~eL 109 (109)
...++++|+|||||+|||++|+.|
T Consensus 189 ~~~~~k~VaIIGaGpAGl~aA~~L 212 (652)
T PRK12814 189 APKSGKKVAIIGAGPAGLTAAYYL 212 (652)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHH
Confidence 345778999999999999999865
No 24
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.29 E-value=0.00015 Score=63.48 Aligned_cols=22 Identities=36% Similarity=0.365 Sum_probs=19.3
Q ss_pred CCCCcEEEEcccHHHHHhhhcC
Q 046761 88 SSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~eL 109 (109)
...++|||||||||||.||.+|
T Consensus 37 ~~~krVAIVGaGPAGlyaA~~L 58 (506)
T PTZ00188 37 AKPFKVGIIGAGPSALYCCKHL 58 (506)
T ss_pred CCCCEEEEECCcHHHHHHHHHH
Confidence 4678999999999999999753
No 25
>PLN02661 Putative thiazole synthesis
Probab=97.29 E-value=0.00013 Score=61.26 Aligned_cols=35 Identities=26% Similarity=0.326 Sum_probs=26.5
Q ss_pred hhhhhhhhhccccccCCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761 69 RSALKKTFAQEQVTFTTPVSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 69 ~sitdk~F~q~qv~f~~~~~~~kkVAVIGgGpAGLacA~eL 109 (109)
|-|++.+|++..- ..+.+|+|||||+|||.||++|
T Consensus 77 ~~i~~~~~~~l~~------~~~~DVlIVGaG~AGl~AA~~L 111 (357)
T PLN02661 77 REMTRRYMTDMIT------YADTDVVIVGAGSAGLSCAYEL 111 (357)
T ss_pred ccchHhHhhhhhh------cccCCEEEECCHHHHHHHHHHH
Confidence 4567777776331 2356899999999999999975
No 26
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.28 E-value=0.00013 Score=60.77 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=19.4
Q ss_pred CCCCcEEEEcccHHHHHhhhcC
Q 046761 88 SSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~eL 109 (109)
..+.+|+|||||||||+||.+|
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~l 230 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYA 230 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHH
Confidence 4567999999999999999875
No 27
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.27 E-value=0.00013 Score=60.94 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=19.5
Q ss_pred CCCCcEEEEcccHHHHHhhhcC
Q 046761 88 SSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~eL 109 (109)
..+.+|+|||||||||+||.+|
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~l 231 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYA 231 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHH
Confidence 4568999999999999999875
No 28
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.24 E-value=0.0002 Score=59.58 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=19.1
Q ss_pred CCCCcEEEEcccHHHHHhhhcC
Q 046761 88 SSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~eL 109 (109)
+...+|+||||||+||++|+.|
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L 42 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDL 42 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHH
Confidence 4556899999999999999865
No 29
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=97.23 E-value=0.00023 Score=56.04 Aligned_cols=32 Identities=25% Similarity=0.225 Sum_probs=24.7
Q ss_pred ccccccCC-CCCCCCcEEEEcccHHHHHhhhcC
Q 046761 78 QEQVTFTT-PVSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 78 q~qv~f~~-~~~~~kkVAVIGgGpAGLacA~eL 109 (109)
.|...|-. ..+...+|+|||||.+|+++|++|
T Consensus 17 ~~~~~~~~~~~~~~~dvvIIGgGi~G~s~A~~L 49 (407)
T TIGR01373 17 GWKPAWRSPEPKPTYDVIIVGGGGHGLATAYYL 49 (407)
T ss_pred CCCcccCCCCCCccCCEEEECCcHHHHHHHHHH
Confidence 35555544 345677999999999999999986
No 30
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.13 E-value=0.00028 Score=58.81 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=17.9
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
...+|+||||||||++||+.|
T Consensus 38 ~~~DViIVGaGPAG~~aA~~L 58 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETL 58 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHH
Confidence 345799999999999999764
No 31
>PLN02676 polyamine oxidase
Probab=97.10 E-value=0.00026 Score=59.44 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=19.4
Q ss_pred CCCCcEEEEcccHHHHHhhhcC
Q 046761 88 SSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~eL 109 (109)
+..++|+|||||++||+||++|
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L 45 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTL 45 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHH
Confidence 4567899999999999999875
No 32
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=97.09 E-value=0.00034 Score=61.90 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=20.1
Q ss_pred CCCCCcEEEEcccHHHHHhhhcC
Q 046761 87 VSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~eL 109 (109)
-+.+++|+|||||+|||++|+.|
T Consensus 19 ~~~~~~a~IIGaGiAGLAAA~~L 41 (576)
T PRK13977 19 GVDNKKAYIIGSGLASLAAAVFL 41 (576)
T ss_pred CCCCCeEEEECCCHHHHHHHHHH
Confidence 45578999999999999999875
No 33
>PLN02463 lycopene beta cyclase
Probab=97.07 E-value=0.00036 Score=58.56 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=18.2
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
...+|+|||||||||++|++|
T Consensus 27 ~~~DVvIVGaGpAGLalA~~L 47 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQV 47 (447)
T ss_pred cCceEEEECCCHHHHHHHHHH
Confidence 345899999999999999865
No 34
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.05 E-value=0.00043 Score=60.09 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=19.8
Q ss_pred CCCCCcEEEEcccHHHHHhhhcC
Q 046761 87 VSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~eL 109 (109)
.+...+|+||||||+||++|+.|
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~L 51 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQL 51 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHH
Confidence 34567899999999999999876
No 35
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.01 E-value=0.00032 Score=61.76 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=18.6
Q ss_pred CCCCcEEEEcccHHHHHhhhcC
Q 046761 88 SSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~eL 109 (109)
..++||||||||+|||+||-.|
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rL 40 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRL 40 (498)
T ss_pred cCCceEEEECCchHHHHHHHHH
Confidence 3455999999999999999764
No 36
>PLN02487 zeta-carotene desaturase
Probab=96.98 E-value=0.00062 Score=59.25 Aligned_cols=19 Identities=37% Similarity=0.567 Sum_probs=17.5
Q ss_pred CcEEEEcccHHHHHhhhcC
Q 046761 91 PCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 91 kkVAVIGgGpAGLacA~eL 109 (109)
++|+|||||++||+||++|
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L 94 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVEL 94 (569)
T ss_pred CeEEEECCCHHHHHHHHHH
Confidence 4999999999999999875
No 37
>PRK13984 putative oxidoreductase; Provisional
Probab=96.98 E-value=0.00063 Score=57.54 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=21.0
Q ss_pred CCCCCCcEEEEcccHHHHHhhhcC
Q 046761 86 PVSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 86 ~~~~~kkVAVIGgGpAGLacA~eL 109 (109)
...++++|+|||+|+|||++|..|
T Consensus 279 ~~~~~~~v~IIGaG~aGl~aA~~L 302 (604)
T PRK13984 279 PEKKNKKVAIVGSGPAGLSAAYFL 302 (604)
T ss_pred cccCCCeEEEECCCHHHHHHHHHH
Confidence 356789999999999999999865
No 38
>PLN02612 phytoene desaturase
Probab=96.90 E-value=0.00054 Score=58.53 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=19.9
Q ss_pred CCCCCcEEEEcccHHHHHhhhcC
Q 046761 87 VSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~eL 109 (109)
...+++|+|||||++||+||++|
T Consensus 90 ~~~~~~v~iiG~G~~Gl~~a~~l 112 (567)
T PLN02612 90 PAKPLKVVIAGAGLAGLSTAKYL 112 (567)
T ss_pred CCCCCCEEEECCCHHHHHHHHHH
Confidence 44567999999999999999875
No 39
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.77 E-value=0.00087 Score=52.71 Aligned_cols=23 Identities=39% Similarity=0.381 Sum_probs=19.7
Q ss_pred CCCCCcEEEEcccHHHHHhhhcC
Q 046761 87 VSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~eL 109 (109)
...+++|+|||+|+|||++|..|
T Consensus 15 ~~~~~~VvIIG~G~aGl~aA~~l 37 (352)
T PRK12770 15 PPTGKKVAIIGAGPAGLAAAGYL 37 (352)
T ss_pred CCCCCEEEEECcCHHHHHHHHHH
Confidence 44678999999999999999764
No 40
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=96.75 E-value=0.00064 Score=55.55 Aligned_cols=19 Identities=32% Similarity=0.597 Sum_probs=17.5
Q ss_pred CcEEEEcccHHHHHhhhcC
Q 046761 91 PCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 91 kkVAVIGgGpAGLacA~eL 109 (109)
-+|+|||||.+||+||++|
T Consensus 25 ~DVvIIGgGi~Gls~A~~L 43 (460)
T TIGR03329 25 ADVCIVGGGFTGLWTAIMI 43 (460)
T ss_pred eCEEEECCCHHHHHHHHHH
Confidence 4799999999999999976
No 41
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=96.73 E-value=0.0008 Score=60.14 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.2
Q ss_pred CCCCCcEEEEcccHHHHHhhhcC
Q 046761 87 VSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~eL 109 (109)
.....+|+|||||++||++|+.|
T Consensus 78 ~~~~~~VlIVGgGIaGLalAlaL 100 (668)
T PLN02927 78 KKKKSRVLVAGGGIGGLVFALAA 100 (668)
T ss_pred ccCCCCEEEECCCHHHHHHHHHH
Confidence 35668999999999999999876
No 42
>PLN02985 squalene monooxygenase
Probab=96.72 E-value=0.00099 Score=56.53 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=20.4
Q ss_pred CCCCCCcEEEEcccHHHHHhhhcC
Q 046761 86 PVSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 86 ~~~~~kkVAVIGgGpAGLacA~eL 109 (109)
....+.+|+|||||++|+++|+.|
T Consensus 39 ~~~~~~DViIVGAG~aGlalA~aL 62 (514)
T PLN02985 39 RKDGATDVIIVGAGVGGSALAYAL 62 (514)
T ss_pred CcCCCceEEEECCCHHHHHHHHHH
Confidence 455667899999999999999865
No 43
>PTZ00367 squalene epoxidase; Provisional
Probab=96.71 E-value=0.0011 Score=57.47 Aligned_cols=22 Identities=36% Similarity=0.392 Sum_probs=19.1
Q ss_pred CCCCcEEEEcccHHHHHhhhcC
Q 046761 88 SSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~eL 109 (109)
..+.+|+|||||++|+++|+.|
T Consensus 31 ~~~~dViIVGaGiaGlalA~aL 52 (567)
T PTZ00367 31 NYDYDVIIVGGSIAGPVLAKAL 52 (567)
T ss_pred ccCccEEEECCCHHHHHHHHHH
Confidence 3567899999999999999865
No 44
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.71 E-value=0.0009 Score=57.49 Aligned_cols=20 Identities=50% Similarity=0.705 Sum_probs=18.2
Q ss_pred CCcEEEEcccHHHHHhhhcC
Q 046761 90 DPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 90 ~kkVAVIGgGpAGLacA~eL 109 (109)
..+|+|||||++|+++|++|
T Consensus 260 ~~dVvIIGaGIaG~s~A~~L 279 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALAL 279 (662)
T ss_pred CCCEEEECccHHHHHHHHHH
Confidence 45899999999999999976
No 45
>PRK13748 putative mercuric reductase; Provisional
Probab=96.67 E-value=0.00091 Score=55.44 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=18.5
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
...+|+||||||||++||..|
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~ 117 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKA 117 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHH
Confidence 357999999999999999864
No 46
>PLN02697 lycopene epsilon cyclase
Probab=96.60 E-value=0.0014 Score=56.71 Aligned_cols=20 Identities=35% Similarity=0.278 Sum_probs=17.7
Q ss_pred CCcEEEEcccHHHHHhhhcC
Q 046761 90 DPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 90 ~kkVAVIGgGpAGLacA~eL 109 (109)
..+|+|||||||||++|..|
T Consensus 108 ~~DVvIVGaGPAGLalA~~L 127 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAES 127 (529)
T ss_pred cccEEEECcCHHHHHHHHHH
Confidence 46899999999999999864
No 47
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.57 E-value=0.0011 Score=60.37 Aligned_cols=21 Identities=33% Similarity=0.355 Sum_probs=18.4
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
..++|+|||||||||++|++|
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~a 182 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAA 182 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHH
Confidence 357899999999999999874
No 48
>PLN02529 lysine-specific histone demethylase 1
Probab=96.51 E-value=0.0015 Score=59.00 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=19.2
Q ss_pred CCCCcEEEEcccHHHHHhhhcC
Q 046761 88 SSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~eL 109 (109)
...++|+|||||+|||+||..|
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l 179 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQL 179 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHH
Confidence 3567999999999999999865
No 49
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=96.38 E-value=0.0019 Score=59.06 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=18.7
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
..++|+|||||++||+||+.|
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L 257 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQL 257 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHH
Confidence 367899999999999999865
No 50
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.37 E-value=0.0025 Score=55.64 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=17.5
Q ss_pred CCcEEEEcccHHHHHhhhcC
Q 046761 90 DPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 90 ~kkVAVIGgGpAGLacA~eL 109 (109)
+.+|+|||||.|||+||+++
T Consensus 35 ~~DVlVVG~G~AGl~AAi~A 54 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATL 54 (640)
T ss_pred ccCEEEECccHHHHHHHHHH
Confidence 45799999999999999864
No 51
>PTZ00058 glutathione reductase; Provisional
Probab=96.23 E-value=0.0032 Score=54.56 Aligned_cols=21 Identities=24% Similarity=0.183 Sum_probs=18.0
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
.+.+|+|||||+||++||.++
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~a 67 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRA 67 (561)
T ss_pred ccccEEEECcCHHHHHHHHHH
Confidence 445799999999999999864
No 52
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=96.23 E-value=0.0023 Score=55.47 Aligned_cols=20 Identities=30% Similarity=0.273 Sum_probs=17.7
Q ss_pred CCcEEEEcccHHHHHhhhcC
Q 046761 90 DPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 90 ~kkVAVIGgGpAGLacA~eL 109 (109)
+-+|+|||||.|||+||+++
T Consensus 29 ~~DVlVIG~G~AGl~AAi~A 48 (617)
T PTZ00139 29 TYDAVVVGAGGAGLRAALGL 48 (617)
T ss_pred ccCEEEECccHHHHHHHHHH
Confidence 55799999999999999863
No 53
>PRK07121 hypothetical protein; Validated
Probab=96.21 E-value=0.0024 Score=52.70 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=17.6
Q ss_pred CCcEEEEcccHHHHHhhhcC
Q 046761 90 DPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 90 ~kkVAVIGgGpAGLacA~eL 109 (109)
+.+|+|||+|.|||+||+++
T Consensus 20 ~~DVvVVGaG~AGl~AA~~a 39 (492)
T PRK07121 20 EADVVVVGFGAAGACAAIEA 39 (492)
T ss_pred ccCEEEECcCHHHHHHHHHH
Confidence 45799999999999999864
No 54
>PLN02507 glutathione reductase
Probab=96.16 E-value=0.0029 Score=53.08 Aligned_cols=22 Identities=18% Similarity=0.123 Sum_probs=18.7
Q ss_pred CCCCcEEEEcccHHHHHhhhcC
Q 046761 88 SSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~eL 109 (109)
..+.+|+||||||+|++||..|
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a 44 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFS 44 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHH
Confidence 4456899999999999999764
No 55
>PLN02815 L-aspartate oxidase
Probab=96.14 E-value=0.0036 Score=54.50 Aligned_cols=19 Identities=32% Similarity=0.382 Sum_probs=16.9
Q ss_pred CcEEEEcccHHHHHhhhcC
Q 046761 91 PCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 91 kkVAVIGgGpAGLacA~eL 109 (109)
-+|+|||+|.|||+||+++
T Consensus 30 ~DVlVVG~G~AGl~AAl~A 48 (594)
T PLN02815 30 FDFLVIGSGIAGLRYALEV 48 (594)
T ss_pred cCEEEECccHHHHHHHHHH
Confidence 3699999999999999864
No 56
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=96.11 E-value=0.0036 Score=52.45 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=18.1
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
..-+|+|||+|.|||+||+++
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~A 80 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEA 80 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHH
Confidence 456899999999999999863
No 57
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=96.07 E-value=0.0036 Score=54.75 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=17.4
Q ss_pred CCcEEEEcccHHHHHhhhcC
Q 046761 90 DPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 90 ~kkVAVIGgGpAGLacA~eL 109 (109)
.-.|+|||+|.|||.||+++
T Consensus 50 ~~DVlVIG~G~AGl~AAl~A 69 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGL 69 (635)
T ss_pred ecCEEEECccHHHHHHHHHH
Confidence 34799999999999999864
No 58
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=95.78 E-value=0.006 Score=52.25 Aligned_cols=21 Identities=38% Similarity=0.411 Sum_probs=18.7
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
...+|+|||||..|+++|++|
T Consensus 44 ~~~DVvIIGGGI~G~a~A~~L 64 (497)
T PTZ00383 44 DVYDVVIVGGGVTGTALFYTL 64 (497)
T ss_pred CcccEEEECccHHHHHHHHHH
Confidence 346899999999999999986
No 59
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=95.61 E-value=0.0052 Score=55.14 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=20.3
Q ss_pred CCCCCCcEEEEcccHHHHHhhhcC
Q 046761 86 PVSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 86 ~~~~~kkVAVIGgGpAGLacA~eL 109 (109)
+....-.|+|||||||||++|+.|
T Consensus 72 R~~e~~Dv~IVG~GPAGLsaAIrl 95 (621)
T KOG2415|consen 72 RESEEVDVVIVGAGPAGLSAAIRL 95 (621)
T ss_pred hhhccccEEEECCCchhHHHHHHH
Confidence 345667899999999999999875
No 60
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=95.59 E-value=0.0058 Score=55.14 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=20.7
Q ss_pred CCCCCcEEEEcccHHHHHhhhcC
Q 046761 87 VSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~eL 109 (109)
..-.++|.|||||+|||++|++|
T Consensus 121 ~~v~~svLVIGGGvAGitAAl~L 143 (622)
T COG1148 121 VEVSKSVLVIGGGVAGITAALEL 143 (622)
T ss_pred HhhccceEEEcCcHHHHHHHHHH
Confidence 55678999999999999999986
No 61
>PLN03000 amine oxidase
Probab=95.58 E-value=0.0068 Score=56.27 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=18.7
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
..++|+|||||++||+||..|
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L 203 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQL 203 (881)
T ss_pred CCCCEEEECccHHHHHHHHHH
Confidence 458999999999999999865
No 62
>PLN02546 glutathione reductase
Probab=95.42 E-value=0.0078 Score=52.04 Aligned_cols=22 Identities=23% Similarity=0.098 Sum_probs=18.6
Q ss_pred CCCCcEEEEcccHHHHHhhhcC
Q 046761 88 SSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~eL 109 (109)
..+.+|+|||||++|+.||..|
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~a 98 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFA 98 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHH
Confidence 3457899999999999999754
No 63
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=95.19 E-value=0.011 Score=51.59 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=18.1
Q ss_pred CCcEEEEcccHHHHHhhhcC
Q 046761 90 DPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 90 ~kkVAVIGgGpAGLacA~eL 109 (109)
..+|+|||||..|.+||++|
T Consensus 71 ~~DVvVIGGGi~Ga~~A~~l 90 (627)
T PLN02464 71 PLDVLVVGGGATGAGVALDA 90 (627)
T ss_pred ccCEEEECCCHHHHHHHHHH
Confidence 36899999999999999975
No 64
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=95.15 E-value=0.011 Score=41.47 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=17.2
Q ss_pred CCCCcEEEEcccHHHHHhhhcC
Q 046761 88 SSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~eL 109 (109)
-.+++|+|||+|.++.-+|.+|
T Consensus 165 ~~~k~V~VVG~G~SA~d~a~~l 186 (203)
T PF13738_consen 165 FKGKRVVVVGGGNSAVDIAYAL 186 (203)
T ss_dssp CTTSEEEEE--SHHHHHHHHHH
T ss_pred cCCCcEEEEcChHHHHHHHHHH
Confidence 4679999999999999988764
No 65
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=94.77 E-value=0.028 Score=50.05 Aligned_cols=20 Identities=35% Similarity=0.443 Sum_probs=17.6
Q ss_pred CCcEEEEcccHHHHHhhhcC
Q 046761 90 DPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 90 ~kkVAVIGgGpAGLacA~eL 109 (109)
+.+|+|||+|++|++||.++
T Consensus 116 ~yDviVIG~G~gG~~aA~~a 135 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINA 135 (659)
T ss_pred cCCEEEECCCHHHHHHHHHH
Confidence 46899999999999999763
No 66
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=94.42 E-value=0.022 Score=45.02 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.3
Q ss_pred CCCCcEEEEcccHHHHHhhhcC
Q 046761 88 SSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~eL 109 (109)
..+++|+|||||+.|+.+|.+|
T Consensus 139 ~~~~~vvViGgG~~g~e~A~~L 160 (377)
T PRK04965 139 RDAQRVLVVGGGLIGTELAMDL 160 (377)
T ss_pred hcCCeEEEECCCHHHHHHHHHH
Confidence 4678999999999999999764
No 67
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=94.35 E-value=0.022 Score=53.09 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=18.0
Q ss_pred CCCCcEEEEcccHHHHHhhhc
Q 046761 88 SSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~e 108 (109)
..+-+|+|||+|.|||+||++
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~ 427 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIE 427 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHH
Confidence 345689999999999999976
No 68
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.34 E-value=0.022 Score=50.35 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=22.9
Q ss_pred CCCCCCCcEEEEcccHHHHHhhhcC
Q 046761 85 TPVSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 85 ~~~~~~kkVAVIGgGpAGLacA~eL 109 (109)
.++-.+|+|||||||-+|+.+|++|
T Consensus 349 GPLF~gK~VAVIGGGNSGvEAAIDL 373 (520)
T COG3634 349 GPLFKGKRVAVIGGGNSGVEAAIDL 373 (520)
T ss_pred CcccCCceEEEECCCcchHHHHHhH
Confidence 4788999999999999999999876
No 69
>PLN02976 amine oxidase
Probab=94.01 E-value=0.034 Score=55.06 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=21.3
Q ss_pred CCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761 84 TTPVSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 84 ~~~~~~~kkVAVIGgGpAGLacA~eL 109 (109)
......+++|+|||||++||+||+.|
T Consensus 687 ~~~~~~~~dV~IIGAG~AGLaAA~~L 712 (1713)
T PLN02976 687 LCDSVDRKKIIVVGAGPAGLTAARHL 712 (1713)
T ss_pred cCCcCCCCcEEEECchHHHHHHHHHH
Confidence 34455678999999999999999865
No 70
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=93.76 E-value=0.035 Score=44.39 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.1
Q ss_pred CCCCcEEEEcccHHHHHhhhcC
Q 046761 88 SSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~eL 109 (109)
..+++|+|||||..|+.+|.+|
T Consensus 142 ~~~~~vvViGgG~ig~E~A~~l 163 (396)
T PRK09754 142 QPERSVVIVGAGTIGLELAASA 163 (396)
T ss_pred hcCCeEEEECCCHHHHHHHHHH
Confidence 4578999999999999998764
No 71
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=93.73 E-value=0.042 Score=40.35 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=19.2
Q ss_pred CCCCCcEEEEcccHHHHHhhhcC
Q 046761 87 VSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~eL 109 (109)
...+++|+|||+|+.|+-+|.+|
T Consensus 138 ~~~~~~v~ViG~G~~~~e~a~~l 160 (300)
T TIGR01292 138 FFKNKEVAVVGGGDSAIEEALYL 160 (300)
T ss_pred hcCCCEEEEECCChHHHHHHHHH
Confidence 34678999999999999988754
No 72
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=93.63 E-value=0.059 Score=45.87 Aligned_cols=39 Identities=18% Similarity=0.194 Sum_probs=29.7
Q ss_pred CCccchhhhhhhhhccccccCCCCCCCCcEEEEcccHHHHHhhhc
Q 046761 64 YGSSRRSALKKTFAQEQVTFTTPVSSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 64 ~~~sr~sitdk~F~q~qv~f~~~~~~~kkVAVIGgGpAGLacA~e 108 (109)
||+ .+|+.|.....-.. .-.+++|+|||.|+.|+.+|..
T Consensus 182 ~g~-g~s~~~~i~r~t~~-----~l~GktVvViG~G~IG~~va~~ 220 (413)
T cd00401 182 YGC-RESLIDGIKRATDV-----MIAGKVAVVAGYGDVGKGCAQS 220 (413)
T ss_pred chh-chhhHHHHHHhcCC-----CCCCCEEEEECCCHHHHHHHHH
Confidence 665 77777766665332 4578999999999999999864
No 73
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=93.34 E-value=0.053 Score=42.21 Aligned_cols=21 Identities=29% Similarity=0.642 Sum_probs=18.3
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
.+++|+|||||++|+.+|.+|
T Consensus 144 ~~~~vvVvG~G~~g~E~A~~l 164 (364)
T TIGR03169 144 GTKRLAVVGGGAAGVEIALAL 164 (364)
T ss_pred CCceEEEECCCHHHHHHHHHH
Confidence 467999999999999998764
No 74
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=93.22 E-value=0.054 Score=43.43 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=18.2
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
.+++|+|||||++|+.+|.+|
T Consensus 136 ~~~~vvViGgG~~g~e~A~~l 156 (427)
T TIGR03385 136 KVENVVIIGGGYIGIEMAEAL 156 (427)
T ss_pred CCCeEEEECCCHHHHHHHHHH
Confidence 468999999999999998754
No 75
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=93.12 E-value=0.054 Score=44.46 Aligned_cols=20 Identities=30% Similarity=0.532 Sum_probs=17.8
Q ss_pred CCcEEEEcccHHHHHhhhcC
Q 046761 90 DPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 90 ~kkVAVIGgGpAGLacA~eL 109 (109)
+++|+|||||++|+.+|.+|
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l 199 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASML 199 (472)
T ss_pred CCEEEEECCCHHHHHHHHHH
Confidence 57999999999999998764
No 76
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=92.89 E-value=0.062 Score=45.13 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.3
Q ss_pred CCCCcEEEEcccHHHHHhhhcC
Q 046761 88 SSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~eL 109 (109)
..+++|+|||||..|+.+|.+|
T Consensus 350 ~~~k~VvViGgG~~g~E~A~~L 371 (515)
T TIGR03140 350 FKGKDVAVIGGGNSGIEAAIDL 371 (515)
T ss_pred cCCCEEEEECCcHHHHHHHHHH
Confidence 4578999999999999999764
No 77
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=92.84 E-value=0.064 Score=44.97 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.6
Q ss_pred CCCCcEEEEcccHHHHHhhhcC
Q 046761 88 SSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~eL 109 (109)
..+++|+|||||..|+.+|.+|
T Consensus 349 ~~gk~VvVVGgG~~g~e~A~~L 370 (517)
T PRK15317 349 FKGKRVAVIGGGNSGVEAAIDL 370 (517)
T ss_pred cCCCEEEEECCCHHHHHHHHHH
Confidence 4688999999999999999865
No 78
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=92.81 E-value=0.064 Score=43.39 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=17.9
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
.+++|+|||||.+|+.+|..|
T Consensus 156 ~~~~vvIIGgG~~g~e~A~~l 176 (438)
T PRK07251 156 LPERLGIIGGGNIGLEFAGLY 176 (438)
T ss_pred cCCeEEEECCCHHHHHHHHHH
Confidence 457999999999999998653
No 79
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=92.80 E-value=0.067 Score=42.15 Aligned_cols=21 Identities=19% Similarity=0.351 Sum_probs=18.5
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
.+++|+|||+|+.|+.+|.+|
T Consensus 171 ~g~~vvViG~G~~g~e~A~~l 191 (352)
T PRK12770 171 EGKKVVVVGAGLTAVDAALEA 191 (352)
T ss_pred CCCEEEEECCCHHHHHHHHHH
Confidence 578999999999999998653
No 80
>PLN02494 adenosylhomocysteinase
Probab=92.78 E-value=0.094 Score=46.01 Aligned_cols=40 Identities=20% Similarity=0.184 Sum_probs=32.0
Q ss_pred CCCccchhhhhhhhhccccccCCCCCCCCcEEEEcccHHHHHhhhc
Q 046761 63 SYGSSRRSALKKTFAQEQVTFTTPVSSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 63 ~~~~sr~sitdk~F~q~qv~f~~~~~~~kkVAVIGgGpAGLacA~e 108 (109)
.||+ |||++|-++..-.+ .-.+++|+|||.|..|..+|..
T Consensus 233 ~yGt-gqS~~d~i~r~t~i-----~LaGKtVvViGyG~IGr~vA~~ 272 (477)
T PLN02494 233 LYGC-RHSLPDGLMRATDV-----MIAGKVAVICGYGDVGKGCAAA 272 (477)
T ss_pred cccc-cccHHHHHHHhcCC-----ccCCCEEEEECCCHHHHHHHHH
Confidence 3776 88998888776443 3468999999999999999864
No 81
>PRK12831 putative oxidoreductase; Provisional
Probab=92.65 E-value=0.084 Score=44.08 Aligned_cols=23 Identities=22% Similarity=0.492 Sum_probs=19.9
Q ss_pred CCCCCCcEEEEcccHHHHHhhhc
Q 046761 86 PVSSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 86 ~~~~~kkVAVIGgGpAGLacA~e 108 (109)
....+++|+|||||..|+-||..
T Consensus 277 ~~~~gk~VvVIGgG~va~d~A~~ 299 (464)
T PRK12831 277 PIKVGKKVAVVGGGNVAMDAART 299 (464)
T ss_pred cccCCCeEEEECCcHHHHHHHHH
Confidence 34678999999999999999865
No 82
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=92.64 E-value=0.069 Score=40.51 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=18.0
Q ss_pred CCcEEEEcccHHHHHhhhcC
Q 046761 90 DPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 90 ~kkVAVIGgGpAGLacA~eL 109 (109)
.++|+|||+|++||.+|..|
T Consensus 136 ~~~v~vvG~G~~gle~A~~~ 155 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAA 155 (415)
T ss_pred cCeEEEECCcHHHHHHHHHH
Confidence 68999999999999999764
No 83
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=92.62 E-value=0.073 Score=42.65 Aligned_cols=21 Identities=24% Similarity=0.211 Sum_probs=18.2
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
.+++|+|||||++|+.+|.+|
T Consensus 148 ~~~~vvVvGgG~~g~e~A~~l 168 (444)
T PRK09564 148 EIKNIVIIGAGFIGLEAVEAA 168 (444)
T ss_pred CCCEEEEECCCHHHHHHHHHH
Confidence 468999999999999998764
No 84
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=92.46 E-value=0.068 Score=47.19 Aligned_cols=21 Identities=38% Similarity=0.457 Sum_probs=17.5
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
..++|.|||+||||+-.|..|
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~L 39 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHL 39 (468)
T ss_pred CCceEEEECCCchHHHHHHHH
Confidence 445899999999999888654
No 85
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=92.42 E-value=0.077 Score=42.86 Aligned_cols=21 Identities=24% Similarity=0.523 Sum_probs=17.9
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
.+++|+|||||.+|+.+|..|
T Consensus 169 ~~~~vvViGgG~~g~e~A~~l 189 (461)
T TIGR01350 169 VPESLVIIGGGVIGIEFASIF 189 (461)
T ss_pred CCCeEEEECCCHHHHHHHHHH
Confidence 357999999999999998653
No 86
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=92.29 E-value=0.09 Score=43.41 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=19.6
Q ss_pred CCCCCcEEEEcccHHHHHhhhcC
Q 046761 87 VSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~eL 109 (109)
...+++|+|||||..|+-||..|
T Consensus 269 ~~~gk~VvVIGgG~~a~d~A~~l 291 (449)
T TIGR01316 269 VYAGKSVVVIGGGNTAVDSARTA 291 (449)
T ss_pred ccCCCeEEEECCCHHHHHHHHHH
Confidence 45689999999999999998653
No 87
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=91.92 E-value=0.098 Score=43.36 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=18.3
Q ss_pred CCCCCcEEEEcccHHHHHhhh
Q 046761 87 VSSDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~ 107 (109)
...+++|+|||||..|+-||.
T Consensus 278 ~~~gk~VvVIGgG~~g~e~A~ 298 (471)
T PRK12810 278 SAKGKHVVVIGGGDTGMDCVG 298 (471)
T ss_pred cCCCCEEEEECCcHHHHHHHH
Confidence 346899999999999999985
No 88
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=91.88 E-value=0.096 Score=42.93 Aligned_cols=19 Identities=21% Similarity=0.466 Sum_probs=17.0
Q ss_pred CCcEEEEcccHHHHHhhhc
Q 046761 90 DPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 90 ~kkVAVIGgGpAGLacA~e 108 (109)
+++|+|||||.+|+.+|..
T Consensus 170 ~~~vvIIGgG~iG~E~A~~ 188 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASI 188 (458)
T ss_pred CCcEEEECCCHHHHHHHHH
Confidence 5799999999999999865
No 89
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=91.75 E-value=0.12 Score=42.45 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=19.6
Q ss_pred CCCCCcEEEEcccHHHHHhhhcC
Q 046761 87 VSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~eL 109 (109)
...+++|+|||||..|+-+|.+|
T Consensus 270 ~~~g~~VvViGgG~~g~e~A~~l 292 (457)
T PRK11749 270 LPVGKRVVVIGGGNTAMDAARTA 292 (457)
T ss_pred CCCCCeEEEECCCHHHHHHHHHH
Confidence 34789999999999999998653
No 90
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=91.65 E-value=0.098 Score=46.38 Aligned_cols=20 Identities=45% Similarity=0.539 Sum_probs=16.8
Q ss_pred CCcEEEEcccHHHHHhhhcC
Q 046761 90 DPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 90 ~kkVAVIGgGpAGLacA~eL 109 (109)
...|+||||||+|++.|.+|
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l 55 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAAL 55 (481)
T ss_pred cCCEEEECCchHHHHHHHHh
Confidence 56899999999998877654
No 91
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=91.60 E-value=0.064 Score=45.12 Aligned_cols=33 Identities=24% Similarity=0.469 Sum_probs=23.7
Q ss_pred hhhhhhhhc-cccccCCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761 70 SALKKTFAQ-EQVTFTTPVSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 70 sitdk~F~q-~qv~f~~~~~~~kkVAVIGgGpAGLacA~eL 109 (109)
..+..+|.+ +.. ..-.|+|||+|-|||++||+.
T Consensus 62 aMTrRYf~Dldky-------AesDvviVGAGSaGLsAAY~I 95 (328)
T KOG2960|consen 62 AMTRRYFKDLDKY-------AESDVVIVGAGSAGLSAAYVI 95 (328)
T ss_pred HHHHHHHHHHHhh-------hccceEEECCCccccceeeee
Confidence 345667766 332 223599999999999999873
No 92
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=91.57 E-value=0.11 Score=42.33 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=17.4
Q ss_pred CCcEEEEcccHHHHHhhhcC
Q 046761 90 DPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 90 ~kkVAVIGgGpAGLacA~eL 109 (109)
.++|+|||||++|+..|.+|
T Consensus 173 ~~~vvVvGgG~~GvE~A~~l 192 (424)
T PTZ00318 173 LLHFVVVGGGPTGVEFAAEL 192 (424)
T ss_pred cCEEEEECCCHHHHHHHHHH
Confidence 35899999999999998764
No 93
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=91.56 E-value=0.12 Score=45.50 Aligned_cols=22 Identities=18% Similarity=0.367 Sum_probs=19.5
Q ss_pred CCCCCcEEEEcccHHHHHhhhc
Q 046761 87 VSSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~e 108 (109)
...+++|||||||..|+-||..
T Consensus 567 ~~~gk~VvVIGgG~~a~d~A~~ 588 (752)
T PRK12778 567 IKFGKKVAVVGGGNTAMDSART 588 (752)
T ss_pred ccCCCcEEEECCcHHHHHHHHH
Confidence 4578999999999999999865
No 94
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=91.49 E-value=0.092 Score=44.28 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=19.0
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
.+|+|+|||+|.+|+-.|.+|
T Consensus 203 ~gk~VvVVG~G~Sg~diA~~L 223 (461)
T PLN02172 203 KNEVVVVIGNFASGADISRDI 223 (461)
T ss_pred CCCEEEEECCCcCHHHHHHHH
Confidence 789999999999999988765
No 95
>PRK10262 thioredoxin reductase; Provisional
Probab=91.45 E-value=0.12 Score=39.69 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=18.9
Q ss_pred CCCCcEEEEcccHHHHHhhhcC
Q 046761 88 SSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~eL 109 (109)
..+++|+|||+|..|+..|.+|
T Consensus 144 ~~g~~vvVvGgG~~g~e~A~~l 165 (321)
T PRK10262 144 YRNQKVAVIGGGNTAVEEALYL 165 (321)
T ss_pred cCCCEEEEECCCHHHHHHHHHH
Confidence 4578999999999999988754
No 96
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=91.42 E-value=0.12 Score=42.22 Aligned_cols=20 Identities=25% Similarity=0.551 Sum_probs=17.6
Q ss_pred CCcEEEEcccHHHHHhhhcC
Q 046761 90 DPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 90 ~kkVAVIGgGpAGLacA~eL 109 (109)
+++|+|||||.+|+.+|..|
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l 185 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAF 185 (463)
T ss_pred CCeEEEECCCHHHHHHHHHH
Confidence 47999999999999998754
No 97
>PRK13984 putative oxidoreductase; Provisional
Probab=91.41 E-value=0.12 Score=43.89 Aligned_cols=21 Identities=19% Similarity=0.404 Sum_probs=18.3
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
.+++|+|||||..|+-||..|
T Consensus 417 ~~k~VvVIGGG~~g~e~A~~l 437 (604)
T PRK13984 417 IPRSLVVIGGGNVAMDIARSM 437 (604)
T ss_pred CCCcEEEECCchHHHHHHHHH
Confidence 468999999999999998753
No 98
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=91.37 E-value=0.12 Score=41.90 Aligned_cols=21 Identities=33% Similarity=0.582 Sum_probs=18.0
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
.+++|+|||||..|+.+|..|
T Consensus 168 ~~k~v~VIGgG~~g~E~A~~l 188 (460)
T PRK06292 168 LPKSLAVIGGGVIGLELGQAL 188 (460)
T ss_pred cCCeEEEECCCHHHHHHHHHH
Confidence 458999999999999998653
No 99
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=91.08 E-value=0.13 Score=41.63 Aligned_cols=21 Identities=14% Similarity=0.210 Sum_probs=18.0
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
.+++|+|||||..|+.+|..|
T Consensus 174 ~~~~v~IiGgG~~g~E~A~~l 194 (461)
T PRK05249 174 LPRSLIIYGAGVIGCEYASIF 194 (461)
T ss_pred cCCeEEEECCCHHHHHHHHHH
Confidence 468999999999999988653
No 100
>PRK06370 mercuric reductase; Validated
Probab=91.06 E-value=0.13 Score=41.98 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=18.0
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
.+++|+|||||..|+.+|..|
T Consensus 170 ~~~~vvVIGgG~~g~E~A~~l 190 (463)
T PRK06370 170 LPEHLVIIGGGYIGLEFAQMF 190 (463)
T ss_pred cCCEEEEECCCHHHHHHHHHH
Confidence 358999999999999998653
No 101
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=90.93 E-value=0.1 Score=42.43 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=15.9
Q ss_pred CCCCCcEEEEcccHHHHHhhhcC
Q 046761 87 VSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~eL 109 (109)
...+++|+|||||.++-.++..|
T Consensus 187 ~~~~~~V~VVGgGQSAAEi~~~L 209 (341)
T PF13434_consen 187 SLAGKRVAVVGGGQSAAEIFLDL 209 (341)
T ss_dssp ----EEEEEE-SSHHHHHHHHHH
T ss_pred ccCCCeEEEECCcHhHHHHHHHH
Confidence 67889999999999998887754
No 102
>PLN02852 ferredoxin-NADP+ reductase
Probab=90.91 E-value=0.15 Score=44.07 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=19.8
Q ss_pred CCCCCcEEEEcccHHHHHhhhcC
Q 046761 87 VSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~eL 109 (109)
+..+++|+|||+|..||-||..|
T Consensus 163 ~~~gk~VvVIGgGnvAlD~Ar~L 185 (491)
T PLN02852 163 LKSSDTAVVLGQGNVALDCARIL 185 (491)
T ss_pred ccCCCEEEEECCCHHHHHHHHHH
Confidence 45689999999999999999753
No 103
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=90.83 E-value=0.14 Score=41.55 Aligned_cols=20 Identities=20% Similarity=0.419 Sum_probs=17.3
Q ss_pred CCcEEEEcccHHHHHhhhcC
Q 046761 90 DPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 90 ~kkVAVIGgGpAGLacA~eL 109 (109)
+++|+|||||++|+.+|..|
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l 191 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAY 191 (462)
T ss_pred CCeEEEECCCHHHHHHHHHH
Confidence 47999999999999988653
No 104
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=90.76 E-value=0.14 Score=45.75 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=18.6
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
.+++|+|||||+.|+.+|.+|
T Consensus 139 ~~k~vvVVGgG~~GlE~A~~L 159 (785)
T TIGR02374 139 RFKKAAVIGGGLLGLEAAVGL 159 (785)
T ss_pred cCCeEEEECCCHHHHHHHHHH
Confidence 568999999999999999764
No 105
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=90.73 E-value=0.15 Score=41.73 Aligned_cols=20 Identities=20% Similarity=0.180 Sum_probs=17.5
Q ss_pred CCcEEEEcccHHHHHhhhcC
Q 046761 90 DPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 90 ~kkVAVIGgGpAGLacA~eL 109 (109)
+++|+|||||..|+.+|..|
T Consensus 148 ~~~vvViGgG~ig~E~A~~l 167 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENL 167 (438)
T ss_pred CCEEEEECCCHHHHHHHHHH
Confidence 57999999999999998754
No 106
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=90.59 E-value=0.15 Score=41.74 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=17.4
Q ss_pred CCcEEEEcccHHHHHhhhcC
Q 046761 90 DPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 90 ~kkVAVIGgGpAGLacA~eL 109 (109)
+++|+|||||..|+.+|..|
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l 191 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVL 191 (466)
T ss_pred CCeEEEECCcHHHHHHHHHH
Confidence 47999999999999998653
No 107
>PRK13748 putative mercuric reductase; Provisional
Probab=90.27 E-value=0.18 Score=41.97 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=18.0
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
.+++|+|||||..|+-+|..|
T Consensus 269 ~~~~vvViGgG~ig~E~A~~l 289 (561)
T PRK13748 269 IPERLAVIGSSVVALELAQAF 289 (561)
T ss_pred CCCeEEEECCCHHHHHHHHHH
Confidence 357999999999999988753
No 108
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=90.19 E-value=0.18 Score=42.96 Aligned_cols=22 Identities=32% Similarity=0.375 Sum_probs=18.9
Q ss_pred CCCCcEEEEcccHHHHHhhhcC
Q 046761 88 SSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~eL 109 (109)
..+++|+|||||..|+.+|..|
T Consensus 141 ~~g~~VvVIGgG~~g~E~A~~L 162 (555)
T TIGR03143 141 FTGMDVFVIGGGFAAAEEAVFL 162 (555)
T ss_pred cCCCEEEEECCCHHHHHHHHHH
Confidence 4689999999999999988653
No 109
>PRK06116 glutathione reductase; Validated
Probab=90.00 E-value=0.19 Score=40.87 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=18.0
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
.+++|+|||||..|+.+|..|
T Consensus 166 ~~~~vvViGgG~~g~E~A~~l 186 (450)
T PRK06116 166 LPKRVAVVGAGYIAVEFAGVL 186 (450)
T ss_pred cCCeEEEECCCHHHHHHHHHH
Confidence 357999999999999998653
No 110
>PLN02785 Protein HOTHEAD
Probab=89.89 E-value=0.24 Score=43.28 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=19.0
Q ss_pred CCCCcEEEEcccHHHHHhhhcC
Q 046761 88 SSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~eL 109 (109)
....+++|||||.||+.+|.+|
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~L 74 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATL 74 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHH
Confidence 3457899999999999999875
No 111
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=89.83 E-value=0.2 Score=41.45 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=17.5
Q ss_pred CCCcEEEEcccHHHHHhhhc
Q 046761 89 SDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~e 108 (109)
.+++|+|||||..|+.+|..
T Consensus 182 ~~~~vvVvGgG~~g~E~A~~ 201 (475)
T PRK06327 182 VPKKLAVIGAGVIGLELGSV 201 (475)
T ss_pred cCCeEEEECCCHHHHHHHHH
Confidence 35799999999999999865
No 112
>PRK07846 mycothione reductase; Reviewed
Probab=89.80 E-value=0.2 Score=41.47 Aligned_cols=20 Identities=25% Similarity=0.499 Sum_probs=17.5
Q ss_pred CCcEEEEcccHHHHHhhhcC
Q 046761 90 DPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 90 ~kkVAVIGgGpAGLacA~eL 109 (109)
+++|+|||||..|+.+|..|
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l 185 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVF 185 (451)
T ss_pred CCeEEEECCCHHHHHHHHHH
Confidence 57999999999999998753
No 113
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=89.72 E-value=0.2 Score=43.39 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=19.9
Q ss_pred CCCCCcEEEEcccHHHHHhhhcC
Q 046761 87 VSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~eL 109 (109)
.-++|+|+|||+|.+|.-+|.+|
T Consensus 180 ~f~gKrVlVVG~g~Sg~DIa~el 202 (531)
T PF00743_consen 180 PFKGKRVLVVGGGNSGADIAVEL 202 (531)
T ss_dssp GGTTSEEEEESSSHHHHHHHHHH
T ss_pred hcCCCEEEEEeCCHhHHHHHHHH
Confidence 45799999999999999888764
No 114
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=89.69 E-value=0.11 Score=46.19 Aligned_cols=42 Identities=17% Similarity=0.209 Sum_probs=27.3
Q ss_pred chhhhhhhhhccccccCC-CCCCCCcEEEEcccHHHHHhhhcC
Q 046761 68 RRSALKKTFAQEQVTFTT-PVSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 68 r~sitdk~F~q~qv~f~~-~~~~~kkVAVIGgGpAGLacA~eL 109 (109)
|+.+++.+-+.+-++++. ....--+.+||||||.|..-|.||
T Consensus 195 R~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL 237 (491)
T KOG2495|consen 195 RRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAEL 237 (491)
T ss_pred HHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHH
Confidence 555555543334443433 233444899999999999999886
No 115
>PRK14694 putative mercuric reductase; Provisional
Probab=89.67 E-value=0.2 Score=41.16 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=17.4
Q ss_pred CCcEEEEcccHHHHHhhhcC
Q 046761 90 DPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 90 ~kkVAVIGgGpAGLacA~eL 109 (109)
+++|+|||+|+.|+..|..|
T Consensus 178 ~~~vvViG~G~~G~E~A~~l 197 (468)
T PRK14694 178 PERLLVIGASVVALELAQAF 197 (468)
T ss_pred CCeEEEECCCHHHHHHHHHH
Confidence 57999999999999988653
No 116
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=89.67 E-value=0.2 Score=41.26 Aligned_cols=20 Identities=35% Similarity=0.429 Sum_probs=17.5
Q ss_pred CCcEEEEcccHHHHHhhhcC
Q 046761 90 DPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 90 ~kkVAVIGgGpAGLacA~eL 109 (109)
+++|+|||||..|+..|..|
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l 185 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVL 185 (450)
T ss_pred CCeEEEECCCHHHHHHHHHH
Confidence 47999999999999988753
No 117
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=89.65 E-value=0.22 Score=41.12 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=17.5
Q ss_pred CCCcEEEEcccHHHHHhhhc
Q 046761 89 SDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~e 108 (109)
.+++|+|||||..|+..|..
T Consensus 173 ~~~~vvIIGgG~ig~E~A~~ 192 (466)
T PRK06115 173 VPKHLVVIGAGVIGLELGSV 192 (466)
T ss_pred CCCeEEEECCCHHHHHHHHH
Confidence 46899999999999998864
No 118
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=89.43 E-value=0.27 Score=41.28 Aligned_cols=21 Identities=24% Similarity=0.183 Sum_probs=18.2
Q ss_pred CCCCCcEEEEcccHHHHHhhh
Q 046761 87 VSSDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~ 107 (109)
...+++|+|||||..|+-||.
T Consensus 280 ~~~gk~VvViGgG~~g~d~a~ 300 (485)
T TIGR01317 280 KAKGKKVVVIGGGDTGADCVG 300 (485)
T ss_pred cCCCCEEEEECCcHHHHHHHH
Confidence 357899999999999999864
No 119
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=89.11 E-value=0.24 Score=40.54 Aligned_cols=20 Identities=20% Similarity=0.401 Sum_probs=17.4
Q ss_pred CCCcEEEEcccHHHHHhhhc
Q 046761 89 SDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~e 108 (109)
.+++|+|||||..|+.+|..
T Consensus 165 ~~~~vvVIGgG~~g~E~A~~ 184 (446)
T TIGR01424 165 LPKSILILGGGYIAVEFAGI 184 (446)
T ss_pred cCCeEEEECCcHHHHHHHHH
Confidence 36799999999999998864
No 120
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=88.59 E-value=0.3 Score=42.71 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=19.4
Q ss_pred CCCCCcEEEEcccHHHHHhhhc
Q 046761 87 VSSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~e 108 (109)
...+++|+|||||..|+-+|..
T Consensus 320 ~~~gk~VvVIGgG~~a~e~A~~ 341 (652)
T PRK12814 320 LHPGKKVVVIGGGNTAIDAART 341 (652)
T ss_pred ccCCCeEEEECCCHHHHHHHHH
Confidence 4578999999999999999865
No 121
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=88.58 E-value=0.28 Score=37.81 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=19.0
Q ss_pred CCCCcEEEEcccHHHHHhhhcC
Q 046761 88 SSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~eL 109 (109)
..+++|+|+|+|-||.++|..|
T Consensus 23 l~~~rvlvlGAGgAg~aiA~~L 44 (226)
T cd05311 23 IEEVKIVINGAGAAGIAIARLL 44 (226)
T ss_pred ccCCEEEEECchHHHHHHHHHH
Confidence 4678999999999999998754
No 122
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=88.53 E-value=0.26 Score=45.00 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=18.8
Q ss_pred CCCCcEEEEcccHHHHHhhhcC
Q 046761 88 SSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~eL 109 (109)
..+++|+|||||+.||.+|..|
T Consensus 143 ~~~k~vvVIGgG~iGlE~A~~L 164 (847)
T PRK14989 143 RRSKRGAVVGGGLLGLEAAGAL 164 (847)
T ss_pred hcCCeEEEECCCHHHHHHHHHH
Confidence 3467999999999999999764
No 123
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=88.48 E-value=0.28 Score=40.52 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=17.3
Q ss_pred CCcEEEEcccHHHHHhhhcC
Q 046761 90 DPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 90 ~kkVAVIGgGpAGLacA~eL 109 (109)
+++|+|||||..|+.+|..|
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l 188 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVF 188 (452)
T ss_pred CCcEEEECCCHHHHHHHHHH
Confidence 57999999999999988653
No 124
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=88.37 E-value=0.28 Score=40.66 Aligned_cols=20 Identities=25% Similarity=0.489 Sum_probs=17.2
Q ss_pred CCcEEEEcccHHHHHhhhcC
Q 046761 90 DPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 90 ~kkVAVIGgGpAGLacA~eL 109 (109)
+++|+|||||+.|+..|..|
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l 193 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVY 193 (471)
T ss_pred CCeEEEECCCHHHHHHHHHH
Confidence 47999999999999988653
No 125
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=88.28 E-value=0.28 Score=45.38 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=18.3
Q ss_pred CCCcEEEEcccHHHHHhhhc
Q 046761 89 SDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~e 108 (109)
.+++|+|||||..|+-||..
T Consensus 446 ~Gk~VvVIGGG~tA~D~A~t 465 (944)
T PRK12779 446 KGKEVFVIGGGNTAMDAART 465 (944)
T ss_pred CCCEEEEECCCHHHHHHHHH
Confidence 68999999999999999864
No 126
>PRK14727 putative mercuric reductase; Provisional
Probab=88.17 E-value=0.3 Score=40.53 Aligned_cols=20 Identities=10% Similarity=0.288 Sum_probs=17.2
Q ss_pred CCcEEEEcccHHHHHhhhcC
Q 046761 90 DPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 90 ~kkVAVIGgGpAGLacA~eL 109 (109)
+++|+|||||..|+..|..|
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l 207 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAY 207 (479)
T ss_pred CCeEEEECCCHHHHHHHHHH
Confidence 47999999999999988653
No 127
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=88.16 E-value=0.3 Score=39.54 Aligned_cols=21 Identities=24% Similarity=0.536 Sum_probs=17.7
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
.+++|+|||||+.|+.+|..|
T Consensus 157 ~~~~v~ViGgG~~g~E~A~~l 177 (441)
T PRK08010 157 LPGHLGILGGGYIGVEFASMF 177 (441)
T ss_pred cCCeEEEECCCHHHHHHHHHH
Confidence 356999999999999988753
No 128
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=88.12 E-value=0.31 Score=42.71 Aligned_cols=21 Identities=33% Similarity=0.260 Sum_probs=17.7
Q ss_pred CCCCCcEEEEcccHHHHHhhh
Q 046761 87 VSSDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~ 107 (109)
.-.+.+|+|||+|++||.++.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~ 182 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIG 182 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHH
Confidence 345889999999999999864
No 129
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=87.69 E-value=0.33 Score=40.10 Aligned_cols=20 Identities=10% Similarity=0.263 Sum_probs=17.3
Q ss_pred CCcEEEEcccHHHHHhhhcC
Q 046761 90 DPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 90 ~kkVAVIGgGpAGLacA~eL 109 (109)
+++|+|||+|..|+.+|..|
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l 196 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAY 196 (466)
T ss_pred CCeEEEECCCHHHHHHHHHH
Confidence 47999999999999988653
No 130
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.66 E-value=0.27 Score=42.25 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=19.7
Q ss_pred CCCCCCcEEEEcccHHHHHhhhc
Q 046761 86 PVSSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 86 ~~~~~kkVAVIGgGpAGLacA~e 108 (109)
..=.+|+|+|||.|.+|+-+|.+
T Consensus 182 e~f~~k~VlVIG~g~SG~DIs~d 204 (448)
T KOG1399|consen 182 EKFRDKVVLVVGCGNSGMDISLD 204 (448)
T ss_pred ccccCceEEEECCCccHHHHHHH
Confidence 35577999999999999988876
No 131
>PTZ00052 thioredoxin reductase; Provisional
Probab=87.48 E-value=0.34 Score=40.76 Aligned_cols=20 Identities=20% Similarity=0.112 Sum_probs=17.3
Q ss_pred CCcEEEEcccHHHHHhhhcC
Q 046761 90 DPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 90 ~kkVAVIGgGpAGLacA~eL 109 (109)
+++|+|||||..|+..|..|
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l 201 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFL 201 (499)
T ss_pred CCeEEEECCCHHHHHHHHHH
Confidence 46899999999999988754
No 132
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=87.45 E-value=0.35 Score=40.65 Aligned_cols=20 Identities=15% Similarity=0.115 Sum_probs=17.2
Q ss_pred CCcEEEEcccHHHHHhhhcC
Q 046761 90 DPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 90 ~kkVAVIGgGpAGLacA~eL 109 (109)
+++|+|||||..|+.+|..|
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l 199 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFL 199 (484)
T ss_pred CCCEEEECCCHHHHHHHHHH
Confidence 46899999999999988753
No 133
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=87.42 E-value=0.42 Score=35.77 Aligned_cols=21 Identities=14% Similarity=0.216 Sum_probs=17.0
Q ss_pred CCCCcEEEEccc-HHHHHhhhc
Q 046761 88 SSDPCVGIIGGG-MARLALSLV 108 (109)
Q Consensus 88 ~~~kkVAVIGgG-pAGLacA~e 108 (109)
-.+++|+|||+| ++|..+|..
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~ 63 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAAL 63 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHH
Confidence 578999999999 479866654
No 134
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=87.28 E-value=0.3 Score=40.97 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=19.2
Q ss_pred CCCCCcEEEEcccHHHHHhhhcC
Q 046761 87 VSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~eL 109 (109)
.=.+|+|+|||+|-+|.-.|-+|
T Consensus 172 ~~~GKrV~VIG~GaSA~di~~~l 194 (443)
T COG2072 172 DLRGKRVLVIGAGASAVDIAPEL 194 (443)
T ss_pred ccCCCeEEEECCCccHHHHHHHH
Confidence 45789999999999998777654
No 135
>PLN02546 glutathione reductase
Probab=87.10 E-value=0.38 Score=41.84 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=18.1
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
.+++|+|||||..|+.+|..|
T Consensus 251 ~~k~V~VIGgG~iGvE~A~~L 271 (558)
T PLN02546 251 KPEKIAIVGGGYIALEFAGIF 271 (558)
T ss_pred cCCeEEEECCCHHHHHHHHHH
Confidence 467999999999999988653
No 136
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=87.00 E-value=0.38 Score=34.78 Aligned_cols=20 Identities=15% Similarity=0.169 Sum_probs=15.9
Q ss_pred CCCcEEEEcccHHHHHhhhc
Q 046761 89 SDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~e 108 (109)
.+.+|+|+|+|-+|+.+|..
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~ 38 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEI 38 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHH
Confidence 34799999999999998853
No 137
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=86.86 E-value=0.42 Score=37.94 Aligned_cols=22 Identities=32% Similarity=0.237 Sum_probs=18.9
Q ss_pred CCCCcEEEEcccHHHHHhhhcC
Q 046761 88 SSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~eL 109 (109)
..+++|+|||+|-+|.++|+.|
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL 146 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHAL 146 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHH
Confidence 3568999999999999998764
No 138
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=86.84 E-value=0.39 Score=40.63 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=16.7
Q ss_pred CCCcEEEEcccHHHHHhhh
Q 046761 89 SDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~ 107 (109)
.+++|+|||||..|+.+|.
T Consensus 186 ~~~~vvIIGgG~iG~E~A~ 204 (486)
T TIGR01423 186 PPRRVLTVGGGFISVEFAG 204 (486)
T ss_pred CCCeEEEECCCHHHHHHHH
Confidence 3589999999999999885
No 139
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=86.81 E-value=0.43 Score=40.88 Aligned_cols=20 Identities=30% Similarity=0.363 Sum_probs=17.5
Q ss_pred CCcEEEEcccHHHHHhhhcC
Q 046761 90 DPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 90 ~kkVAVIGgGpAGLacA~eL 109 (109)
...|+|||||+.|...|.||
T Consensus 155 ~lti~IvGgG~TGVElAgeL 174 (405)
T COG1252 155 LLTIVIVGGGPTGVELAGEL 174 (405)
T ss_pred eeEEEEECCChhHHHHHHHH
Confidence 35799999999999999875
No 140
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=86.71 E-value=0.42 Score=43.95 Aligned_cols=32 Identities=31% Similarity=0.300 Sum_probs=26.0
Q ss_pred cchhhhhhhhhccccccCCCCCCCCcEEEEcccHHHHHhhhc
Q 046761 67 SRRSALKKTFAQEQVTFTTPVSSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 67 sr~sitdk~F~q~qv~f~~~~~~~kkVAVIGgGpAGLacA~e 108 (109)
||+++++..-..++ ..|.|||||-.|--||++
T Consensus 54 sRe~~l~~l~~~~~----------fDVLIIGGGAtGaGcALD 85 (680)
T KOG0042|consen 54 SREDLLEALKSTHE----------FDVLIIGGGATGAGCALD 85 (680)
T ss_pred CHHHHHHHhhcCCc----------ccEEEECCCccCcceeeh
Confidence 99999888544332 579999999999999975
No 141
>PTZ00058 glutathione reductase; Provisional
Probab=86.62 E-value=0.44 Score=41.56 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=17.2
Q ss_pred CCcEEEEcccHHHHHhhhc
Q 046761 90 DPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 90 ~kkVAVIGgGpAGLacA~e 108 (109)
+++|+|||||..|+.+|..
T Consensus 237 pk~VvIIGgG~iGlE~A~~ 255 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINV 255 (561)
T ss_pred CCEEEEECCcHHHHHHHHH
Confidence 6899999999999998865
No 142
>PLN02507 glutathione reductase
Probab=86.54 E-value=0.41 Score=40.38 Aligned_cols=19 Identities=16% Similarity=0.410 Sum_probs=16.9
Q ss_pred CCcEEEEcccHHHHHhhhc
Q 046761 90 DPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 90 ~kkVAVIGgGpAGLacA~e 108 (109)
+++|+|||||..|+-+|..
T Consensus 203 ~k~vvVIGgG~ig~E~A~~ 221 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASI 221 (499)
T ss_pred CCeEEEECCcHHHHHHHHH
Confidence 5799999999999998864
No 143
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=86.08 E-value=0.69 Score=39.47 Aligned_cols=39 Identities=15% Similarity=0.324 Sum_probs=27.8
Q ss_pred CCccchhhhhhhhhccccccCCCCCCCCcEEEEcccHHHHHhhhc
Q 046761 64 YGSSRRSALKKTFAQEQVTFTTPVSSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 64 ~~~sr~sitdk~F~q~qv~f~~~~~~~kkVAVIGgGpAGLacA~e 108 (109)
||+ ++|+.+.......+ .-.+++|+|||.|..|+.+|..
T Consensus 175 yg~-g~s~~~~i~r~t~~-----~l~Gk~VvViG~G~IG~~vA~~ 213 (406)
T TIGR00936 175 YGT-GQSTIDGILRATNL-----LIAGKTVVVAGYGWCGKGIAMR 213 (406)
T ss_pred ccc-chhHHHHHHHhcCC-----CCCcCEEEEECCCHHHHHHHHH
Confidence 653 46776655443222 3578999999999999999864
No 144
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=85.45 E-value=0.57 Score=35.82 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=27.0
Q ss_pred chhhhhhhhhccccccCCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761 68 RRSALKKTFAQEQVTFTTPVSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 68 r~sitdk~F~q~qv~f~~~~~~~kkVAVIGgGpAGLacA~eL 109 (109)
+||++|-+...-.+ .-.+|+|+|+|=|..|..||..|
T Consensus 6 g~S~~d~i~r~t~~-----~l~Gk~vvV~GYG~vG~g~A~~l 42 (162)
T PF00670_consen 6 GQSLVDGIMRATNL-----MLAGKRVVVIGYGKVGKGIARAL 42 (162)
T ss_dssp HHHHHHHHHHHH-S-------TTSEEEEE--SHHHHHHHHHH
T ss_pred chhHHHHHHhcCce-----eeCCCEEEEeCCCcccHHHHHHH
Confidence 68888888876444 44789999999999999999754
No 145
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=85.23 E-value=0.54 Score=40.81 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=17.7
Q ss_pred CCCCcEEEEcccHHHHHhhh
Q 046761 88 SSDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~ 107 (109)
..+++|+|||||..|+-||.
T Consensus 466 ~~gk~VvVIGgG~~a~d~A~ 485 (654)
T PRK12769 466 TAGLNVVVLGGGDTAMDCVR 485 (654)
T ss_pred CCCCeEEEECCcHHHHHHHH
Confidence 46799999999999999875
No 146
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=85.11 E-value=0.48 Score=42.17 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=18.4
Q ss_pred CCCCCcEEEEcccHHHHHhhhc
Q 046761 87 VSSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~e 108 (109)
......|.||||||||-++|.+
T Consensus 208 ~k~~yDVLvVGgGPAgaaAAiY 229 (520)
T COG3634 208 AKDAYDVLVVGGGPAGAAAAIY 229 (520)
T ss_pred ccCCceEEEEcCCcchhHHHHH
Confidence 3455689999999999999874
No 147
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=85.03 E-value=0.7 Score=30.03 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=18.3
Q ss_pred CCCCcEEEEcccHHHHHhhhcC
Q 046761 88 SSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~eL 109 (109)
..+++|+|+|.|-+|..+|..|
T Consensus 21 ~~~~~v~i~G~G~~g~~~a~~l 42 (86)
T cd05191 21 LKGKTVVVLGAGEVGKGIAKLL 42 (86)
T ss_pred CCCCEEEEECCCHHHHHHHHHH
Confidence 4678999999999998887643
No 148
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=84.92 E-value=0.56 Score=41.67 Aligned_cols=23 Identities=35% Similarity=0.265 Sum_probs=19.7
Q ss_pred CCCCCCcEEEEcccHHHHHhhhc
Q 046761 86 PVSSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 86 ~~~~~kkVAVIGgGpAGLacA~e 108 (109)
...-|...+|||||-+||+||-|
T Consensus 15 ~~sydyDLIviGgGSgGLacaKe 37 (503)
T KOG4716|consen 15 FSSYDYDLIVIGGGSGGLACAKE 37 (503)
T ss_pred cccCCccEEEEcCCcchhhHHHH
Confidence 45667889999999999999965
No 149
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=84.82 E-value=0.6 Score=44.35 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=19.0
Q ss_pred CCCCCcEEEEcccHHHHHhhhc
Q 046761 87 VSSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~e 108 (109)
...+++|||||||..|+-||..
T Consensus 665 ~~~GKrVVVIGGGnVAmD~Ar~ 686 (1019)
T PRK09853 665 LKLGKHVVVVGGGNTAMDAARA 686 (1019)
T ss_pred ccCCCEEEEECCChHHHHHHHH
Confidence 4568999999999999999853
No 150
>PLN02602 lactate dehydrogenase
Probab=84.64 E-value=0.74 Score=38.18 Aligned_cols=19 Identities=21% Similarity=0.429 Sum_probs=17.2
Q ss_pred CcEEEEcccHHHHHhhhcC
Q 046761 91 PCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 91 kkVAVIGgGpAGLacA~eL 109 (109)
+||+|||+|-.|-++|+.|
T Consensus 38 ~KI~IIGaG~VG~~~a~~l 56 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTI 56 (350)
T ss_pred CEEEEECCCHHHHHHHHHH
Confidence 6999999999999999854
No 151
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=84.52 E-value=0.7 Score=43.02 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=19.4
Q ss_pred CCCCCCcEEEEcccHHHHHhhhc
Q 046761 86 PVSSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 86 ~~~~~kkVAVIGgGpAGLacA~e 108 (109)
....+++|+|||||..|+-||..
T Consensus 567 ~~~~Gk~VvVIGgG~tA~D~A~~ 589 (1006)
T PRK12775 567 PISLGKSVVVIGAGNTAMDCLRV 589 (1006)
T ss_pred CccCCCEEEEECCcHHHHHHHHH
Confidence 34578999999999999998753
No 152
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=84.29 E-value=0.64 Score=38.29 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=17.1
Q ss_pred CCCcEEEEcccHHHHHhhhc
Q 046761 89 SDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~e 108 (109)
.+.+|+|||+|.+|+.+|..
T Consensus 166 ~~~~VlViGaG~vG~~aa~~ 185 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKM 185 (370)
T ss_pred CCceEEEEcCCHHHHHHHHH
Confidence 45679999999999998864
No 153
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=83.30 E-value=0.76 Score=36.78 Aligned_cols=21 Identities=24% Similarity=0.200 Sum_probs=18.6
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
.+++|+|||+|=|+.++|+.|
T Consensus 126 ~~k~vlilGaGGaarAi~~aL 146 (283)
T PRK14027 126 KLDSVVQVGAGGVGNAVAYAL 146 (283)
T ss_pred CCCeEEEECCcHHHHHHHHHH
Confidence 478999999999999998864
No 154
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=82.99 E-value=0.78 Score=36.22 Aligned_cols=21 Identities=24% Similarity=0.118 Sum_probs=18.5
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
.+++|+|||+|=++.++|+.|
T Consensus 124 ~~k~vlvlGaGGaarai~~aL 144 (282)
T TIGR01809 124 AGFRGLVIGAGGTSRAAVYAL 144 (282)
T ss_pred CCceEEEEcCcHHHHHHHHHH
Confidence 578999999999999998764
No 155
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=82.50 E-value=0.82 Score=36.40 Aligned_cols=21 Identities=19% Similarity=0.044 Sum_probs=17.8
Q ss_pred CCCCcEEEEcccHHHHHhhhc
Q 046761 88 SSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~e 108 (109)
..+.+|+|||+|..|..+|..
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~ 196 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKH 196 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHH
Confidence 467899999999999987754
No 156
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=82.37 E-value=0.71 Score=41.59 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=18.5
Q ss_pred CCCCcEEEEcccHHHHHhhhcC
Q 046761 88 SSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~eL 109 (109)
-..|.+-|||+|+||||+|..|
T Consensus 20 VdqKsaY~vG~GlAsLA~AvfL 41 (587)
T COG4716 20 VDQKSAYIVGGGLASLAAAVFL 41 (587)
T ss_pred cccceeEEEccchHhhhheeEE
Confidence 3458899999999999999654
No 157
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=82.34 E-value=0.96 Score=32.84 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=17.4
Q ss_pred CCCcEEEEcc-cHHHHHhhhcC
Q 046761 89 SDPCVGIIGG-GMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGg-GpAGLacA~eL 109 (109)
.+++|+|+|| |..|..+|..|
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l 48 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLL 48 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHH
Confidence 5789999997 99998887643
No 158
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=82.32 E-value=1.1 Score=35.59 Aligned_cols=32 Identities=28% Similarity=0.347 Sum_probs=22.5
Q ss_pred hhhhhccccccCC-CCCCCCcEEEEcccHHHHH
Q 046761 73 KKTFAQEQVTFTT-PVSSDPCVGIIGGGMARLA 104 (109)
Q Consensus 73 dk~F~q~qv~f~~-~~~~~kkVAVIGgGpAGLa 104 (109)
+..|+.+..+|+- -...+++|+|||||..++-
T Consensus 7 ~~~~~~~~~~~pi~l~~~~~~VLVVGGG~VA~R 39 (223)
T PRK05562 7 EDIYNEENKYMFISLLSNKIKVLIIGGGKAAFI 39 (223)
T ss_pred hHHhhccCCEeeeEEECCCCEEEEECCCHHHHH
Confidence 3446666655654 3456889999999998864
No 159
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=82.16 E-value=1.1 Score=42.91 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=17.7
Q ss_pred CCCCcEEEEcccHHHHHhhh
Q 046761 88 SSDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~ 107 (109)
..+++|||||||..|+-||.
T Consensus 548 ~~Gk~VVVIGGGnTAmD~Ar 567 (1028)
T PRK06567 548 VIRMPIAVIGGGLTSLDAAT 567 (1028)
T ss_pred cCCCCEEEEcCcHHHHHHHH
Confidence 34689999999999999986
No 160
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=81.71 E-value=1.2 Score=36.67 Aligned_cols=29 Identities=21% Similarity=0.133 Sum_probs=21.6
Q ss_pred ccccCCCCCCCCcEEEEc-ccHHHHHhhhc
Q 046761 80 QVTFTTPVSSDPCVGIIG-GGMARLALSLV 108 (109)
Q Consensus 80 qv~f~~~~~~~kkVAVIG-gGpAGLacA~e 108 (109)
+..|-...|..++|+||| .|.-|-..|..
T Consensus 88 ~~~~~~~~~~~~~I~IiGG~GlmG~slA~~ 117 (374)
T PRK11199 88 DKGFKTLNPDLRPVVIVGGKGQLGRLFAKM 117 (374)
T ss_pred HhcccccCcccceEEEEcCCChhhHHHHHH
Confidence 333545566778999999 79999887764
No 161
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=81.61 E-value=0.99 Score=35.66 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=18.2
Q ss_pred CCCCcEEEEcccHHHHHhhhcC
Q 046761 88 SSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~eL 109 (109)
..+++|+|+|+|=+|.++|..|
T Consensus 124 ~~~k~vlI~GAGGagrAia~~L 145 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQC 145 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHH
Confidence 3578999999999999888653
No 162
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=81.58 E-value=1.4 Score=35.40 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=14.4
Q ss_pred CCcEEEEcccHHHHHhh
Q 046761 90 DPCVGIIGGGMARLALS 106 (109)
Q Consensus 90 ~kkVAVIGgGpAGLacA 106 (109)
+.+|+|+|+||.||.++
T Consensus 169 ~~~V~V~GaGpIGLla~ 185 (350)
T COG1063 169 GGTVVVVGAGPIGLLAI 185 (350)
T ss_pred CCEEEEECCCHHHHHHH
Confidence 33899999999999864
No 163
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=81.40 E-value=0.63 Score=40.96 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=17.9
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
.+.+.||||||..|||.|.||
T Consensus 47 ~~~D~VvvGgGiVGlAsARel 67 (453)
T KOG2665|consen 47 ERYDLVVVGGGIVGLASAREL 67 (453)
T ss_pred ccccEEEECCceeehhhhHHH
Confidence 345689999999999999876
No 164
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=81.27 E-value=0.96 Score=42.86 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=18.8
Q ss_pred CCCCCcEEEEcccHHHHHhhhc
Q 046761 87 VSSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~e 108 (109)
...+++|+|||||..|+-||..
T Consensus 663 ~~~GK~VVVIGGGnvAmD~Ar~ 684 (1012)
T TIGR03315 663 NPLGKHVVVVGGGNTAMDAARA 684 (1012)
T ss_pred cccCCeEEEECCCHHHHHHHHH
Confidence 3468999999999999998853
No 165
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=81.25 E-value=1 Score=34.83 Aligned_cols=22 Identities=41% Similarity=0.430 Sum_probs=18.5
Q ss_pred CCCCcEEEEcccHHHHHhhhcC
Q 046761 88 SSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~eL 109 (109)
..+++|+|||+|-+|.++|..|
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L 136 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPL 136 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHH
Confidence 4578999999999999988654
No 166
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=81.01 E-value=1.2 Score=30.45 Aligned_cols=21 Identities=29% Similarity=0.251 Sum_probs=17.3
Q ss_pred CCCCcEEEEcccHHHHHhhhc
Q 046761 88 SSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~e 108 (109)
.++++|+|||+|..|.+.|..
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~ 37 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYA 37 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHH
Confidence 356899999999999887754
No 167
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=80.71 E-value=1.1 Score=34.95 Aligned_cols=22 Identities=32% Similarity=0.292 Sum_probs=18.7
Q ss_pred CCCCcEEEEcccHHHHHhhhcC
Q 046761 88 SSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~eL 109 (109)
..+++|+|||+|-+|.++|..|
T Consensus 121 ~~~k~vlVlGaGg~a~ai~~aL 142 (278)
T PRK00258 121 LKGKRILILGAGGAARAVILPL 142 (278)
T ss_pred CCCCEEEEEcCcHHHHHHHHHH
Confidence 4678999999999999988654
No 168
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=80.30 E-value=1.1 Score=37.18 Aligned_cols=21 Identities=24% Similarity=0.124 Sum_probs=18.0
Q ss_pred CCCCcEEEEcccHHHHHhhhc
Q 046761 88 SSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~e 108 (109)
..+++|+|||+|..|..+|..
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~ 200 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKH 200 (423)
T ss_pred ccCCEEEEECchHHHHHHHHH
Confidence 467899999999999988754
No 169
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=80.21 E-value=1.1 Score=39.99 Aligned_cols=21 Identities=33% Similarity=0.301 Sum_probs=18.1
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
..-.|+|||||..|.+.|+-|
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWL 105 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWL 105 (509)
T ss_pred cccCEEEECCCccchhhHHHH
Confidence 466899999999999999754
No 170
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=79.93 E-value=1.5 Score=41.48 Aligned_cols=45 Identities=27% Similarity=0.336 Sum_probs=29.7
Q ss_pred CCCccchhhhhhhhhccccccC--CCCCCCCcEEEEcccHHHHHhhhcC
Q 046761 63 SYGSSRRSALKKTFAQEQVTFT--TPVSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 63 ~~~~sr~sitdk~F~q~qv~f~--~~~~~~kkVAVIGgGpAGLacA~eL 109 (109)
.+|.+|+ +++.-.++.+... .+++..-+|+|||||-.|-..|+.|
T Consensus 12 ~~~~~~~--v~~~qg~~~~~~s~s~~~~~~A~vvViggG~~g~~~~yhl 58 (856)
T KOG2844|consen 12 EKGVPYQ--VKERQGTSVVARSPSTPLPSTADVVVIGGGSLGCSTAYHL 58 (856)
T ss_pred CCCCchh--hcccCcccccccCccccCCCcccEEEEcCCchhHHHHHHH
Confidence 4566666 3442233333333 4667778999999999999888754
No 171
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=79.86 E-value=1.1 Score=40.17 Aligned_cols=19 Identities=26% Similarity=0.508 Sum_probs=16.5
Q ss_pred CCcEEEEcccHHHHHhhhc
Q 046761 90 DPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 90 ~kkVAVIGgGpAGLacA~e 108 (109)
+++|+|||||..|+..|..
T Consensus 312 pk~VvIVGgG~iGvE~A~~ 330 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDI 330 (659)
T ss_pred CCceEEECCCHHHHHHHHH
Confidence 5799999999999988754
No 172
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=78.82 E-value=1.4 Score=35.32 Aligned_cols=22 Identities=18% Similarity=0.166 Sum_probs=18.1
Q ss_pred CCCCcEEEEcccHHHHHhhhcC
Q 046761 88 SSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~eL 109 (109)
..+++|+|||+|=|+.++|+.|
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l 143 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQG 143 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHH
Confidence 3668999999999999877643
No 173
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=78.77 E-value=1.3 Score=37.07 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=18.0
Q ss_pred CCCCcEEEEcccHHHHHhhhc
Q 046761 88 SSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~e 108 (109)
..+++|+|||||..|+-+|..
T Consensus 280 ~~gk~VvVIGgG~~a~d~A~~ 300 (467)
T TIGR01318 280 VEGKRVVVLGGGDTAMDCVRT 300 (467)
T ss_pred cCCCEEEEECCcHHHHHHHHH
Confidence 357999999999999998754
No 174
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=78.37 E-value=1.5 Score=35.61 Aligned_cols=23 Identities=30% Similarity=0.366 Sum_probs=19.6
Q ss_pred CCCCCcEEEEcccHHHHHhhhcC
Q 046761 87 VSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~eL 109 (109)
.-.+++|+|||||-+.+--|+.|
T Consensus 140 ~~~~k~v~ViGgG~sAve~Al~L 162 (305)
T COG0492 140 FFKGKDVVVIGGGDSAVEEALYL 162 (305)
T ss_pred cccCCeEEEEcCCHHHHHHHHHH
Confidence 35678999999999999888765
No 175
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=78.24 E-value=1.6 Score=34.84 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=17.6
Q ss_pred CCcEEEEcccHHHHHhhhcC
Q 046761 90 DPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 90 ~kkVAVIGgGpAGLacA~eL 109 (109)
+++|+|||+|=|+.++++.|
T Consensus 122 ~~~vlilGaGGaarAi~~aL 141 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAAL 141 (272)
T ss_pred CCeEEEECCcHHHHHHHHHH
Confidence 46899999999999998865
No 176
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=77.67 E-value=1.6 Score=34.90 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=18.2
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
.+++|.|||.|.+|+.+|..|
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L 171 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTL 171 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHH
Confidence 578999999999999987643
No 177
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=77.59 E-value=1.5 Score=36.55 Aligned_cols=21 Identities=14% Similarity=0.034 Sum_probs=18.0
Q ss_pred CCCCcEEEEcccHHHHHhhhc
Q 046761 88 SSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~e 108 (109)
..+++|+|||+|..|..+|..
T Consensus 178 l~~~~VlViGaG~iG~~~a~~ 198 (417)
T TIGR01035 178 LKGKKALLIGAGEMGELVAKH 198 (417)
T ss_pred ccCCEEEEECChHHHHHHHHH
Confidence 467899999999999988764
No 178
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=77.18 E-value=1.5 Score=37.89 Aligned_cols=22 Identities=27% Similarity=0.205 Sum_probs=18.7
Q ss_pred CCCCcEEEEcccHHHHHhhhcC
Q 046761 88 SSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~eL 109 (109)
..+++|+|+|+|-+|.++|+.|
T Consensus 377 ~~~k~vlIlGaGGagrAia~~L 398 (529)
T PLN02520 377 LAGKLFVVIGAGGAGKALAYGA 398 (529)
T ss_pred CCCCEEEEECCcHHHHHHHHHH
Confidence 3578999999999999998764
No 179
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=77.00 E-value=1.6 Score=34.82 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=18.8
Q ss_pred CCCCcEEEEcccHHHHHhhhcC
Q 046761 88 SSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~eL 109 (109)
-.+++|+|||.|-+|.+.|..|
T Consensus 149 l~gk~v~IiG~G~iG~avA~~L 170 (287)
T TIGR02853 149 IHGSNVMVLGFGRTGMTIARTF 170 (287)
T ss_pred CCCCEEEEEcChHHHHHHHHHH
Confidence 3578999999999999988653
No 180
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=76.61 E-value=1.7 Score=38.43 Aligned_cols=19 Identities=37% Similarity=0.335 Sum_probs=16.7
Q ss_pred CCCcEEEEcccHHHHHhhh
Q 046761 89 SDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~ 107 (109)
.+-+|+|||+|.+|+.++.
T Consensus 163 p~akVlViGaG~iGl~Aa~ 181 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIG 181 (511)
T ss_pred CCCEEEEECCCHHHHHHHH
Confidence 3679999999999999875
No 181
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=76.51 E-value=1.4 Score=38.68 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=19.6
Q ss_pred CCCCCCcEEEEcccHHHHHhhhc
Q 046761 86 PVSSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 86 ~~~~~kkVAVIGgGpAGLacA~e 108 (109)
..-++-+|+|.|+|-||++||..
T Consensus 195 k~l~d~kiv~~GAGAAgiaia~~ 217 (432)
T COG0281 195 KKLKDQKIVINGAGAAGIAIADL 217 (432)
T ss_pred CCccceEEEEeCCcHHHHHHHHH
Confidence 35577899999999999999864
No 182
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=76.31 E-value=1.4 Score=39.10 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=18.4
Q ss_pred CCCCcEEEEcccHHHHHhhhc
Q 046761 88 SSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~e 108 (109)
-+.+.|+|||+|++|..|+..
T Consensus 72 ~~ar~fvivGgG~~g~vaie~ 92 (478)
T KOG1336|consen 72 YAARHFVIVGGGPGGAVAIET 92 (478)
T ss_pred cccceEEEEcCCchhhhhHhh
Confidence 467899999999999999864
No 183
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=76.16 E-value=1.8 Score=34.95 Aligned_cols=23 Identities=9% Similarity=0.174 Sum_probs=19.5
Q ss_pred CCCCCcEEEEcccH-HHHHhhhcC
Q 046761 87 VSSDPCVGIIGGGM-ARLALSLVL 109 (109)
Q Consensus 87 ~~~~kkVAVIGgGp-AGLacA~eL 109 (109)
.-.+++|+|||.|. +|...|+.|
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L 179 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMML 179 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHH
Confidence 45788999999997 999988754
No 184
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=76.14 E-value=1.4 Score=37.67 Aligned_cols=19 Identities=16% Similarity=0.343 Sum_probs=17.3
Q ss_pred CCcEEEEcccHHHHHhhhc
Q 046761 90 DPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 90 ~kkVAVIGgGpAGLacA~e 108 (109)
.-||.|||+|-.|+|||+.
T Consensus 20 ~~KItVVG~G~VGmAca~s 38 (332)
T KOG1495|consen 20 HNKITVVGVGQVGMACAIS 38 (332)
T ss_pred CceEEEEccchHHHHHHHH
Confidence 6789999999999999974
No 185
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=75.83 E-value=1.7 Score=40.03 Aligned_cols=21 Identities=5% Similarity=-0.058 Sum_probs=18.3
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
.+++|+|||+|+.|+..|..|
T Consensus 316 ~gk~VvViG~G~~g~e~A~~L 336 (985)
T TIGR01372 316 PGKRIVVATNNDSAYRAAADL 336 (985)
T ss_pred CCCeEEEECCCHHHHHHHHHH
Confidence 578999999999999888754
No 186
>PLN00106 malate dehydrogenase
Probab=75.21 E-value=2 Score=35.32 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=17.9
Q ss_pred CCCcEEEEcc-cHHHHHhhhcC
Q 046761 89 SDPCVGIIGG-GMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGg-GpAGLacA~eL 109 (109)
...||+|||+ |-.|-++|+.|
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l 38 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLM 38 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHH
Confidence 4469999999 99999998754
No 187
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=74.96 E-value=1.5 Score=32.90 Aligned_cols=22 Identities=32% Similarity=0.261 Sum_probs=18.0
Q ss_pred CCCCcEEEEcccHHHHHhhhcC
Q 046761 88 SSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~eL 109 (109)
-.+.+|+|||.|-.|-.+|..|
T Consensus 19 l~~~~VlviG~GglGs~ia~~L 40 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYL 40 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHH
Confidence 3678999999999998887653
No 188
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=74.73 E-value=2 Score=32.55 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=17.8
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
.+.+|+|||+|-.|-.+|..|
T Consensus 20 ~~~~V~IvG~GglGs~ia~~L 40 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINL 40 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHH
Confidence 467899999999999888654
No 189
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=73.88 E-value=2.2 Score=36.71 Aligned_cols=21 Identities=14% Similarity=0.017 Sum_probs=18.6
Q ss_pred CCCCcEEEEcccHHHHHhhhc
Q 046761 88 SSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~e 108 (109)
-.+++|+|||.|..|..+|..
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~ 230 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQR 230 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHH
Confidence 478999999999999999864
No 190
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=73.59 E-value=2 Score=38.46 Aligned_cols=20 Identities=30% Similarity=0.409 Sum_probs=18.0
Q ss_pred CCCcEEEEcccHHHHHhhhc
Q 046761 89 SDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~e 108 (109)
.|-+|+|||+||.|-.+|+.
T Consensus 38 ~d~DvvvIG~GpGGyvAAik 57 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIK 57 (506)
T ss_pred ccCCEEEECCCCchHHHHHH
Confidence 58899999999999999874
No 191
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=73.25 E-value=3.2 Score=36.58 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=19.8
Q ss_pred CCCCCcEEEEcccHHHHHhhhcC
Q 046761 87 VSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~eL 109 (109)
.-.+++|+|||.|..|..+|..|
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL 273 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQAL 273 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHH
Confidence 45799999999999999998643
No 192
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=73.01 E-value=2.4 Score=36.54 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=19.2
Q ss_pred CCCCCCCcEEEEcccHHHHHhhh
Q 046761 85 TPVSSDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 85 ~~~~~~kkVAVIGgGpAGLacA~ 107 (109)
.+...+++|+|||||..++=||.
T Consensus 257 ~~~~~gk~vvVIGgG~Ta~D~~~ 279 (457)
T COG0493 257 TPPAKGKRVVVIGGGDTAMDCAG 279 (457)
T ss_pred CCCCCCCeEEEECCCCCHHHHHH
Confidence 34556699999999999999984
No 193
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=72.46 E-value=2.7 Score=31.68 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=18.9
Q ss_pred CCCCcEEEEcccHHHHHhhhcC
Q 046761 88 SSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~eL 109 (109)
..+++|+|+|.|-.|..+|..|
T Consensus 26 l~gk~v~I~G~G~vG~~~A~~L 47 (200)
T cd01075 26 LEGKTVAVQGLGKVGYKLAEHL 47 (200)
T ss_pred CCCCEEEEECCCHHHHHHHHHH
Confidence 4778999999999999988654
No 194
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=72.29 E-value=2.5 Score=34.43 Aligned_cols=21 Identities=33% Similarity=0.411 Sum_probs=18.9
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
++++|+|+|+|=|+.++++.|
T Consensus 125 ~~~~vlilGAGGAarAv~~aL 145 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFAL 145 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHH
Confidence 578999999999999998865
No 195
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=72.23 E-value=1.2 Score=30.13 Aligned_cols=17 Identities=29% Similarity=0.718 Sum_probs=0.0
Q ss_pred EEEEcccHHHHHhhhcC
Q 046761 93 VGIIGGGMARLALSLVL 109 (109)
Q Consensus 93 VAVIGgGpAGLacA~eL 109 (109)
.+||+||.+|+.||.-|
T Consensus 12 aavIaG~Vvgll~ailL 28 (64)
T PF01034_consen 12 AAVIAGGVVGLLFAILL 28 (64)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67999999999999754
No 196
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=71.77 E-value=3.2 Score=32.41 Aligned_cols=19 Identities=16% Similarity=0.323 Sum_probs=16.1
Q ss_pred CCCCcEEEEcccHHHHHhh
Q 046761 88 SSDPCVGIIGGGMARLALS 106 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA 106 (109)
..+.+|+|+|+|+.|+.++
T Consensus 162 ~~g~~VlV~G~G~vGl~~~ 180 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITA 180 (341)
T ss_pred CCCCEEEEECCCHHHHHHH
Confidence 4578999999999998754
No 197
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=70.88 E-value=3.7 Score=31.60 Aligned_cols=19 Identities=21% Similarity=0.004 Sum_probs=16.1
Q ss_pred CCCcEEEEcccHHHHHhhh
Q 046761 89 SDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~ 107 (109)
.+.+|+|+|+|..|+.++.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q 162 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLAR 162 (308)
T ss_pred CCCcEEEECCCHHHHHHHH
Confidence 5678999999999998763
No 198
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=70.74 E-value=2.7 Score=36.19 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=16.8
Q ss_pred CCCCcEEEEcccHHHHHhhh
Q 046761 88 SSDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~ 107 (109)
.-+++++|||||..|+.-|.
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~ 190 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFAS 190 (454)
T ss_pred cCCCEEEEECCCHHHHHHHH
Confidence 45678999999999998775
No 199
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=70.71 E-value=2.9 Score=33.76 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=18.1
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
.+.+|+|||.|-.|-.||..|
T Consensus 29 ~~s~VlVvG~GGVGs~vae~L 49 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEAL 49 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHH
Confidence 567899999999999998654
No 200
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=70.52 E-value=3.4 Score=32.11 Aligned_cols=20 Identities=20% Similarity=0.195 Sum_probs=17.0
Q ss_pred CCCCcEEEEcccHHHHHhhh
Q 046761 88 SSDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~ 107 (109)
..+.+|+|+|+|..|+.++.
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q 190 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAAL 190 (355)
T ss_pred CCCCEEEEECCCHHHHHHHH
Confidence 46789999999999988753
No 201
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=69.40 E-value=3.2 Score=32.26 Aligned_cols=21 Identities=29% Similarity=0.151 Sum_probs=17.8
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
.+.+|+|||.|-.|-.+|..|
T Consensus 31 ~~~~VliiG~GglGs~va~~L 51 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYL 51 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHH
Confidence 568999999999998888654
No 202
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=69.20 E-value=2.6 Score=38.88 Aligned_cols=21 Identities=33% Similarity=0.347 Sum_probs=16.7
Q ss_pred CCCCcEEEEcccHHHHHhhhc
Q 046761 88 SSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~e 108 (109)
.+...|+|||||-||-.+|.+
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaA 46 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAA 46 (679)
T ss_pred CCcccEEEECCCccchHHHHH
Confidence 344589999999999887753
No 203
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=68.96 E-value=2.9 Score=34.05 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=17.9
Q ss_pred CCCCcEEEEcccHHHHHhhhc
Q 046761 88 SSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~e 108 (109)
-++-+|+|+|+|-||+.+|.-
T Consensus 23 l~d~riv~~GAGsAg~gia~l 43 (254)
T cd00762 23 ISEHKVLFNGAGAAALGIANL 43 (254)
T ss_pred hhhcEEEEECcCHHHHHHHHH
Confidence 456789999999999999853
No 204
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=68.92 E-value=2.9 Score=34.41 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=17.9
Q ss_pred CCCCcEEEEcccHHHHHhhhc
Q 046761 88 SSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~e 108 (109)
-.+-+|+|+|+|-||+.||.-
T Consensus 23 l~d~~iv~~GAGsAg~gia~l 43 (279)
T cd05312 23 LSDQRILFLGAGSAGIGIADL 43 (279)
T ss_pred hhhcEEEEECcCHHHHHHHHH
Confidence 356789999999999999853
No 205
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=68.76 E-value=3.3 Score=35.20 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=18.7
Q ss_pred CCCCcEEEEcc-cHHHHHhhhcC
Q 046761 88 SSDPCVGIIGG-GMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGg-GpAGLacA~eL 109 (109)
.+.-||+|||+ |..|-++|+.|
T Consensus 42 ~~p~KV~IIGAaG~VG~~~A~~l 64 (387)
T TIGR01757 42 KKTVNVAVSGAAGMISNHLLFML 64 (387)
T ss_pred CCCeEEEEECCCcHHHHHHHHHH
Confidence 34679999999 99999999854
No 206
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=68.76 E-value=11 Score=30.80 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=20.8
Q ss_pred CCCCCCCCcEEEEcc-cHHHHHhhhcC
Q 046761 84 TTPVSSDPCVGIIGG-GMARLALSLVL 109 (109)
Q Consensus 84 ~~~~~~~kkVAVIGg-GpAGLacA~eL 109 (109)
......+++|.|+|| |..|..++.+|
T Consensus 54 ~~~~~~~~kVLVtGatG~IG~~l~~~L 80 (390)
T PLN02657 54 RSKEPKDVTVLVVGATGYIGKFVVREL 80 (390)
T ss_pred cccCCCCCEEEEECCCcHHHHHHHHHH
Confidence 345677889999998 99999887654
No 207
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=68.35 E-value=2.5 Score=32.06 Aligned_cols=21 Identities=19% Similarity=0.189 Sum_probs=17.5
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
...+|+|||.|-.|-.+|..|
T Consensus 20 ~~~~VlivG~GglGs~va~~L 40 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYL 40 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHH
Confidence 467899999999998887654
No 208
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=68.22 E-value=3.6 Score=33.53 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=18.6
Q ss_pred CCCCCcEEEEcccHHHHHhhhc
Q 046761 87 VSSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~e 108 (109)
.-.+++|+|||.|..|.++|..
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~ 164 (330)
T PRK12480 143 PVKNMTVAIIGTGRIGAATAKI 164 (330)
T ss_pred ccCCCEEEEECCCHHHHHHHHH
Confidence 3477899999999999998854
No 209
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=67.98 E-value=3.7 Score=29.90 Aligned_cols=25 Identities=28% Similarity=0.209 Sum_probs=20.3
Q ss_pred CCCCCCCCcEEEEcccHHHHHhhhc
Q 046761 84 TTPVSSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 84 ~~~~~~~kkVAVIGgGpAGLacA~e 108 (109)
....-.+++|.|||-|-.|.+.|-.
T Consensus 30 ~~~~l~g~tvgIiG~G~IG~~vA~~ 54 (178)
T PF02826_consen 30 PGRELRGKTVGIIGYGRIGRAVARR 54 (178)
T ss_dssp TBS-STTSEEEEESTSHHHHHHHHH
T ss_pred CccccCCCEEEEEEEcCCcCeEeee
Confidence 3456689999999999999998854
No 210
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=67.75 E-value=3.3 Score=33.68 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=15.2
Q ss_pred CCCcEEEEcccHHHHHhhh
Q 046761 89 SDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~ 107 (109)
.|-+|+|+|+|-||+.+|.
T Consensus 24 ~d~riv~~GAGsAg~gia~ 42 (255)
T PF03949_consen 24 SDQRIVFFGAGSAGIGIAR 42 (255)
T ss_dssp GG-EEEEEB-SHHHHHHHH
T ss_pred HHcEEEEeCCChhHHHHHH
Confidence 5678999999999999985
No 211
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=67.19 E-value=5.1 Score=30.26 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=16.5
Q ss_pred CCCcEEEEcccHHHHHhhh
Q 046761 89 SDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~ 107 (109)
.+.+|+|+|+|+.|+.++.
T Consensus 120 ~g~~VlV~G~G~vG~~~~~ 138 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAA 138 (280)
T ss_pred CCCEEEEECCCHHHHHHHH
Confidence 6789999999999998753
No 212
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=66.34 E-value=4 Score=33.50 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=17.7
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
..++|+|||+|-.|-.+|..|
T Consensus 23 ~~~~VlIiG~GglGs~va~~L 43 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEAL 43 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHH
Confidence 567899999999998888654
No 213
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=66.31 E-value=4 Score=31.82 Aligned_cols=21 Identities=33% Similarity=0.167 Sum_probs=17.5
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
.+.+|+|||+|-.|-.+|..|
T Consensus 23 ~~~~VlvvG~GglGs~va~~L 43 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYL 43 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHH
Confidence 457899999999998888654
No 214
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=66.01 E-value=4.2 Score=31.07 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=17.9
Q ss_pred CCCCcEEEEcccHHHHHhhhcC
Q 046761 88 SSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~eL 109 (109)
-...+|+|||+|-.|-.+|..|
T Consensus 26 L~~~~V~ViG~GglGs~ia~~L 47 (212)
T PRK08644 26 LKKAKVGIAGAGGLGSNIAVAL 47 (212)
T ss_pred HhCCCEEEECcCHHHHHHHHHH
Confidence 3567899999999998887654
No 215
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=66.01 E-value=4 Score=35.60 Aligned_cols=21 Identities=19% Similarity=0.216 Sum_probs=17.8
Q ss_pred CCCCCcEEEEcccHHHHHhhh
Q 046761 87 VSSDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~ 107 (109)
...+++|+|||+|..|+-+|.
T Consensus 448 ~~~gk~vvViGgG~~a~d~a~ 468 (639)
T PRK12809 448 DVEGKRVVVLGGGDTTMDCLR 468 (639)
T ss_pred cCCCCeEEEECCcHHHHHHHH
Confidence 346899999999999998874
No 216
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=65.96 E-value=4 Score=34.61 Aligned_cols=22 Identities=32% Similarity=0.193 Sum_probs=18.3
Q ss_pred CCCCcEEEEcccHHHHHhhhcC
Q 046761 88 SSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~eL 109 (109)
..+++|.|||+|-+|-.+|..|
T Consensus 179 l~~kkvlviGaG~~a~~va~~L 200 (414)
T PRK13940 179 ISSKNVLIIGAGQTGELLFRHV 200 (414)
T ss_pred ccCCEEEEEcCcHHHHHHHHHH
Confidence 4678999999999998887643
No 217
>PLN02740 Alcohol dehydrogenase-like
Probab=65.94 E-value=5 Score=31.86 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=18.3
Q ss_pred CCCCCCcEEEEcccHHHHHhhh
Q 046761 86 PVSSDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 86 ~~~~~kkVAVIGgGpAGLacA~ 107 (109)
.+..+.+|+|+|+|+.|+.++.
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q 216 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAE 216 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHH
Confidence 3566889999999999998753
No 218
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=65.75 E-value=5.5 Score=30.87 Aligned_cols=19 Identities=16% Similarity=-0.003 Sum_probs=16.3
Q ss_pred CCCCcEEEEcccHHHHHhh
Q 046761 88 SSDPCVGIIGGGMARLALS 106 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA 106 (109)
..+.+|+|+|+|+.|+.+.
T Consensus 168 ~~g~~VlV~G~G~vG~~ai 186 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIV 186 (343)
T ss_pred CCCCEEEEECCCHHHHHHH
Confidence 3578999999999999875
No 219
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=65.61 E-value=3.4 Score=36.97 Aligned_cols=18 Identities=28% Similarity=0.560 Sum_probs=15.0
Q ss_pred CCcEEEEcccHHHHHhhh
Q 046761 90 DPCVGIIGGGMARLALSL 107 (109)
Q Consensus 90 ~kkVAVIGgGpAGLacA~ 107 (109)
-++|+|||+|..|-..|.
T Consensus 309 i~~v~ViGaG~mG~giA~ 326 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAY 326 (708)
T ss_pred ccEEEEECCchhhHHHHH
Confidence 478999999998877665
No 220
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=65.54 E-value=3.8 Score=36.82 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=18.0
Q ss_pred CCCCcEEEEcccHHHHHhhhcC
Q 046761 88 SSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~eL 109 (109)
..+-+|+|||+|-+|-+.|+.|
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L 64 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYAL 64 (509)
T ss_pred CCcccEEEECCcchHHHHHHHH
Confidence 3444599999999999998865
No 221
>PRK08605 D-lactate dehydrogenase; Validated
Probab=65.52 E-value=4.3 Score=32.84 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=18.5
Q ss_pred CCCCCcEEEEcccHHHHHhhhc
Q 046761 87 VSSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~e 108 (109)
.-.+++|.|||.|..|.+.|..
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~ 164 (332)
T PRK08605 143 SIKDLKVAVIGTGRIGLAVAKI 164 (332)
T ss_pred eeCCCEEEEECCCHHHHHHHHH
Confidence 3478899999999999988754
No 222
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=65.36 E-value=3 Score=34.68 Aligned_cols=22 Identities=23% Similarity=0.149 Sum_probs=18.2
Q ss_pred CCCCcEEEEcccHHHHHhhhcC
Q 046761 88 SSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~eL 109 (109)
-.+.+|+|||+|-.|-.+|..|
T Consensus 39 l~~~~VliiG~GglG~~v~~~L 60 (370)
T PRK05600 39 LHNARVLVIGAGGLGCPAMQSL 60 (370)
T ss_pred hcCCcEEEECCCHHHHHHHHHH
Confidence 3567899999999999888654
No 223
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=65.31 E-value=4.2 Score=35.31 Aligned_cols=23 Identities=26% Similarity=0.202 Sum_probs=19.1
Q ss_pred CCCCCcEEEEcc-cHHHHHhhhcC
Q 046761 87 VSSDPCVGIIGG-GMARLALSLVL 109 (109)
Q Consensus 87 ~~~~kkVAVIGg-GpAGLacA~eL 109 (109)
-.+.-+|+|||+ |..|-++|+.|
T Consensus 97 ~~~~~KV~IIGAaG~VG~~~A~~L 120 (444)
T PLN00112 97 WKKLINVAVSGAAGMISNHLLFKL 120 (444)
T ss_pred CCCCeEEEEECCCcHHHHHHHHHH
Confidence 344579999999 99999999754
No 224
>PRK08328 hypothetical protein; Provisional
Probab=64.23 E-value=4.6 Score=31.05 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=17.0
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
.+.+|+|||+|-.|-.+|..|
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~L 46 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYL 46 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHH
Confidence 567899999998888777543
No 225
>PRK00536 speE spermidine synthase; Provisional
Probab=63.74 E-value=3.1 Score=33.59 Aligned_cols=18 Identities=22% Similarity=-0.018 Sum_probs=15.2
Q ss_pred CCCCCCcEEEEcccHHHH
Q 046761 86 PVSSDPCVGIIGGGMARL 103 (109)
Q Consensus 86 ~~~~~kkVAVIGgGpAGL 103 (109)
..+..++|.|||||=-|.
T Consensus 69 ~h~~pk~VLIiGGGDGg~ 86 (262)
T PRK00536 69 TKKELKEVLIVDGFDLEL 86 (262)
T ss_pred hCCCCCeEEEEcCCchHH
Confidence 468889999999997664
No 226
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=63.48 E-value=4 Score=36.58 Aligned_cols=17 Identities=12% Similarity=0.354 Sum_probs=14.7
Q ss_pred CcEEEEcccHHHHHhhh
Q 046761 91 PCVGIIGGGMARLALSL 107 (109)
Q Consensus 91 kkVAVIGgGpAGLacA~ 107 (109)
++|+|||+|..|-..|.
T Consensus 314 ~~v~ViGaG~mG~gIA~ 330 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAY 330 (715)
T ss_pred ceEEEECCchhHHHHHH
Confidence 68999999998877765
No 227
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=63.29 E-value=4.1 Score=36.65 Aligned_cols=20 Identities=10% Similarity=0.237 Sum_probs=16.0
Q ss_pred CCCcEEEEcccHHHHHhhhc
Q 046761 89 SDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~e 108 (109)
.=++|+|||+|..|-..|..
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~ 331 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQ 331 (714)
T ss_pred ccceEEEECCchHHHHHHHH
Confidence 44689999999998877653
No 228
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=62.84 E-value=5 Score=32.68 Aligned_cols=18 Identities=33% Similarity=0.309 Sum_probs=14.5
Q ss_pred CCCCCcEEEEcccHHHHH
Q 046761 87 VSSDPCVGIIGGGMARLA 104 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLa 104 (109)
-+..|+|.|||||.-|.+
T Consensus 74 h~~pk~VLiiGgGdG~tl 91 (282)
T COG0421 74 HPNPKRVLIIGGGDGGTL 91 (282)
T ss_pred CCCCCeEEEECCCccHHH
Confidence 445579999999998865
No 229
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=62.09 E-value=4.6 Score=36.17 Aligned_cols=17 Identities=35% Similarity=0.632 Sum_probs=14.6
Q ss_pred CcEEEEcccHHHHHhhh
Q 046761 91 PCVGIIGGGMARLALSL 107 (109)
Q Consensus 91 kkVAVIGgGpAGLacA~ 107 (109)
++|+|||+|..|-..|.
T Consensus 305 ~~v~ViGaG~mG~~iA~ 321 (699)
T TIGR02440 305 KKVGILGGGLMGGGIAS 321 (699)
T ss_pred cEEEEECCcHHHHHHHH
Confidence 58999999999987764
No 230
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=62.05 E-value=3.4 Score=36.55 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=20.0
Q ss_pred CCCCCCCcEEEEcccHHHHHhhhc
Q 046761 85 TPVSSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 85 ~~~~~~kkVAVIGgGpAGLacA~e 108 (109)
...++-.+|.|||||-.||+.|..
T Consensus 34 ~~~~~h~kvLVvGGGsgGi~~A~k 57 (446)
T KOG3851|consen 34 RFARKHFKVLVVGGGSGGIGMAAK 57 (446)
T ss_pred hhcccceEEEEEcCCcchhHHHHH
Confidence 345677899999999999999874
No 231
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=61.32 E-value=5.2 Score=32.72 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=18.3
Q ss_pred CCCCcEEEEcccHHHHHhhhcC
Q 046761 88 SSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~eL 109 (109)
-.+.+|+|||.|-.|-.+|..|
T Consensus 133 l~~~~VlvvG~GG~Gs~ia~~L 154 (376)
T PRK08762 133 LLEARVLLIGAGGLGSPAALYL 154 (376)
T ss_pred HhcCcEEEECCCHHHHHHHHHH
Confidence 3778999999999998887654
No 232
>PLN00203 glutamyl-tRNA reductase
Probab=61.30 E-value=5 Score=35.24 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=17.6
Q ss_pred CCCCcEEEEcccHHHHHhhhc
Q 046761 88 SSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~e 108 (109)
-.+++|+|||+|..|..+|..
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~ 284 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKH 284 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHH
Confidence 357899999999999988754
No 233
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=61.29 E-value=7 Score=30.38 Aligned_cols=21 Identities=19% Similarity=0.142 Sum_probs=17.7
Q ss_pred CCCCCcEEEEcccHHHHHhhh
Q 046761 87 VSSDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~ 107 (109)
+..+.+|+|+|+|+.|+.++.
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~ 184 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQ 184 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHH
Confidence 456889999999999998753
No 234
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=59.56 E-value=9.6 Score=29.98 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=17.1
Q ss_pred CCCCCcEEEEcccHHHHHhh
Q 046761 87 VSSDPCVGIIGGGMARLALS 106 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA 106 (109)
+..+.+|+|+|+|+.|+.++
T Consensus 189 i~~g~~VlV~G~G~vG~~a~ 208 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSAL 208 (371)
T ss_pred CCCCCEEEEECCCHHHHHHH
Confidence 45678999999999999875
No 235
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=59.39 E-value=7.9 Score=31.02 Aligned_cols=25 Identities=20% Similarity=0.121 Sum_probs=20.8
Q ss_pred CCCCCCCcEEEEcc-cHHHHHhhhcC
Q 046761 85 TPVSSDPCVGIIGG-GMARLALSLVL 109 (109)
Q Consensus 85 ~~~~~~kkVAVIGg-GpAGLacA~eL 109 (109)
..+.++++|+|.|| |..|...+.+|
T Consensus 16 ~~~~~~~~IlVtGgtGfIG~~l~~~L 41 (370)
T PLN02695 16 YWPSEKLRICITGAGGFIASHIARRL 41 (370)
T ss_pred CCCCCCCEEEEECCccHHHHHHHHHH
Confidence 45678899999999 99999887654
No 236
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=59.38 E-value=5.4 Score=36.14 Aligned_cols=18 Identities=11% Similarity=0.383 Sum_probs=14.9
Q ss_pred CCcEEEEcccHHHHHhhh
Q 046761 90 DPCVGIIGGGMARLALSL 107 (109)
Q Consensus 90 ~kkVAVIGgGpAGLacA~ 107 (109)
=++|+|||+|..|-..|+
T Consensus 335 i~~v~ViGaG~MG~gIA~ 352 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQ 352 (737)
T ss_pred ccEEEEECCCHhHHHHHH
Confidence 368999999998887665
No 237
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=59.09 E-value=6.4 Score=33.66 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=17.8
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
.+++|+|||+|-+|.++|..|
T Consensus 331 ~~k~vlIiGaGgiG~aia~~L 351 (477)
T PRK09310 331 NNQHVAIVGAGGAAKAIATTL 351 (477)
T ss_pred CCCEEEEEcCcHHHHHHHHHH
Confidence 568999999999999888653
No 238
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=59.00 E-value=5.1 Score=35.89 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=19.9
Q ss_pred CCCCCcEEEEcccHHHHHhhhcC
Q 046761 87 VSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~eL 109 (109)
.....+|+|||+|++|+-+|++|
T Consensus 15 ~~~~~~vvivgag~~g~f~a~~~ 37 (486)
T COG2509 15 MNAALDVVIVGAGPAGLFAAYEL 37 (486)
T ss_pred hhhccceEEECCCchHHHHHHHH
Confidence 45667899999999999999875
No 239
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=58.88 E-value=3.9 Score=33.56 Aligned_cols=21 Identities=33% Similarity=0.322 Sum_probs=17.5
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
.+.+|+|||.|-.|-.+|..|
T Consensus 27 ~~~~VlivG~GGlGs~~a~~L 47 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYL 47 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHH
Confidence 567999999999998887654
No 240
>PF01973 MAF_flag10: Protein of unknown function DUF115; InterPro: IPR002826 The prokaryotic proteins in this family have no known function.
Probab=57.98 E-value=4.8 Score=28.84 Aligned_cols=12 Identities=25% Similarity=0.321 Sum_probs=10.9
Q ss_pred CCcEEEEcccHH
Q 046761 90 DPCVGIIGGGMA 101 (109)
Q Consensus 90 ~kkVAVIGgGpA 101 (109)
++.|+|||+||+
T Consensus 24 ~~~~~IvgaGPS 35 (170)
T PF01973_consen 24 GKPAIIVGAGPS 35 (170)
T ss_pred CCeEEEEecCCC
Confidence 689999999996
No 241
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=57.92 E-value=2.5 Score=31.83 Aligned_cols=35 Identities=26% Similarity=0.469 Sum_probs=24.8
Q ss_pred CCCCCccchhhhhhhhhccccccCCCCCCCCcEEEEcccHHHH
Q 046761 61 RSSYGSSRRSALKKTFAQEQVTFTTPVSSDPCVGIIGGGMARL 103 (109)
Q Consensus 61 ~~~~~~sr~sitdk~F~q~qv~f~~~~~~~kkVAVIGgGpAGL 103 (109)
++|||+|-+-..++.= .-+..++.|+|||.|..|.
T Consensus 40 krK~GTSHkl~~eEle--------~~lee~~E~ivvGTG~~G~ 74 (121)
T COG1504 40 KRKYGTSHKLALEELE--------ELLEEGPEVIVVGTGQSGM 74 (121)
T ss_pred hhhcCcccccCHHHHH--------HHHhcCCcEEEEecCceeE
Confidence 6789999776655421 1233677899999999884
No 242
>PRK06141 ornithine cyclodeaminase; Validated
Probab=57.83 E-value=7.5 Score=31.09 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=17.8
Q ss_pred CCCCCcEEEEcccHHHHHhhh
Q 046761 87 VSSDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~ 107 (109)
.+..++|+|||.|..|...+.
T Consensus 122 ~~~~~~v~iiG~G~~a~~~~~ 142 (314)
T PRK06141 122 RKDASRLLVVGTGRLASLLAL 142 (314)
T ss_pred CCCCceEEEECCcHHHHHHHH
Confidence 356789999999999998864
No 243
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=57.12 E-value=7.4 Score=31.97 Aligned_cols=21 Identities=33% Similarity=0.325 Sum_probs=17.4
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
...+|+|||+|-.|-.+|..|
T Consensus 23 ~~~~VlVvG~GglGs~va~~L 43 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEML 43 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHH
Confidence 567899999999998887654
No 244
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=56.11 E-value=6.4 Score=35.73 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=18.4
Q ss_pred CCCCCcEEEEcccHHHHHhhh
Q 046761 87 VSSDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~ 107 (109)
.-.+-+|+++|+|-||+.+|-
T Consensus 318 ~l~d~riv~~GAGsAgigia~ 338 (581)
T PLN03129 318 DLADQRILFAGAGEAGTGIAE 338 (581)
T ss_pred chhhceEEEECCCHHHHHHHH
Confidence 456789999999999999985
No 245
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=55.69 E-value=12 Score=29.57 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=17.2
Q ss_pred CCCCCcEEEEcccHHHHHhh
Q 046761 87 VSSDPCVGIIGGGMARLALS 106 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA 106 (109)
+..+.+|+|+|+|+.|+.++
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~ 202 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVI 202 (368)
T ss_pred CCCCCEEEEECCCHHHHHHH
Confidence 56688999999999998865
No 246
>PLN02712 arogenate dehydrogenase
Probab=55.67 E-value=20 Score=32.36 Aligned_cols=20 Identities=25% Similarity=0.179 Sum_probs=15.9
Q ss_pred CCCcEEEEcccHHHHHhhhc
Q 046761 89 SDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~e 108 (109)
+..+|+|||.|..|-+.|..
T Consensus 51 ~~~kIgIIG~G~mG~slA~~ 70 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKT 70 (667)
T ss_pred CCCEEEEEccCHHHHHHHHH
Confidence 33679999999999877654
No 247
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=55.49 E-value=12 Score=29.12 Aligned_cols=21 Identities=29% Similarity=0.237 Sum_probs=17.6
Q ss_pred CCCCCcEEEEcccHHHHHhhh
Q 046761 87 VSSDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~ 107 (109)
+..+.+|+|+|+|+.|+.++.
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~ 194 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIA 194 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHH
Confidence 456889999999999988753
No 248
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=55.20 E-value=7.6 Score=33.09 Aligned_cols=21 Identities=24% Similarity=0.249 Sum_probs=17.7
Q ss_pred CCCCCcEEEEcccHHHHHhhh
Q 046761 87 VSSDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~ 107 (109)
...+++|+|||||..|+-+|.
T Consensus 264 ~~~gk~v~ViGgg~~a~d~a~ 284 (564)
T PRK12771 264 PFLGKRVVVIGGGNTAMDAAR 284 (564)
T ss_pred cCCCCCEEEECChHHHHHHHH
Confidence 446899999999999988775
No 249
>PRK12862 malic enzyme; Reviewed
Probab=55.01 E-value=6.3 Score=36.37 Aligned_cols=22 Identities=27% Similarity=0.107 Sum_probs=18.9
Q ss_pred CCCCCcEEEEcccHHHHHhhhc
Q 046761 87 VSSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~e 108 (109)
.-.+-+|+|.|+|-||++||--
T Consensus 190 ~~~~~~iv~~GaGaag~~~a~~ 211 (763)
T PRK12862 190 DIEDVKLVASGAGAAALACLDL 211 (763)
T ss_pred ChhhcEEEEEChhHHHHHHHHH
Confidence 4567899999999999999853
No 250
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=54.85 E-value=6.5 Score=34.25 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=17.3
Q ss_pred CCCCCcEEEEcccHHHHHhhh
Q 046761 87 VSSDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~ 107 (109)
--.+-+|+|||||-+|..+|-
T Consensus 165 GV~~~kv~iiGGGvvgtnaAk 185 (371)
T COG0686 165 GVLPAKVVVLGGGVVGTNAAK 185 (371)
T ss_pred CCCCccEEEECCccccchHHH
Confidence 445668999999999998873
No 251
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=54.84 E-value=12 Score=29.66 Aligned_cols=20 Identities=15% Similarity=0.111 Sum_probs=16.9
Q ss_pred CCCCcEEEEcccHHHHHhhh
Q 046761 88 SSDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~ 107 (109)
..+.+|+|+|+|..|+.++.
T Consensus 182 ~~g~~VlV~G~G~vG~~avq 201 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVK 201 (360)
T ss_pred CCCCEEEEECCCHHHHHHHH
Confidence 46789999999999998753
No 252
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=54.72 E-value=10 Score=28.91 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=17.4
Q ss_pred CCCCCcEEEEcccHHHHHhhh
Q 046761 87 VSSDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~ 107 (109)
+..+.+|+|+|+|..|+.++.
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~ 181 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALM 181 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHH
Confidence 345889999999999998753
No 253
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=53.48 E-value=8.1 Score=31.74 Aligned_cols=22 Identities=18% Similarity=0.152 Sum_probs=18.0
Q ss_pred CCCCcEEEEcccH-HHHHhhhcC
Q 046761 88 SSDPCVGIIGGGM-ARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGgGp-AGLacA~eL 109 (109)
-.+++|+|||.|. .|.-.|..|
T Consensus 156 l~Gk~vvVIGrs~~VG~pla~lL 178 (286)
T PRK14175 156 LEGKNAVVIGRSHIVGQPVSKLL 178 (286)
T ss_pred CCCCEEEEECCCchhHHHHHHHH
Confidence 4789999999988 898777543
No 254
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=53.37 E-value=14 Score=28.37 Aligned_cols=21 Identities=29% Similarity=0.178 Sum_probs=17.6
Q ss_pred CCCCCcEEEEcccHHHHHhhh
Q 046761 87 VSSDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~ 107 (109)
...+.+|+|.|+|..|+.++.
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~ 178 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQ 178 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHH
Confidence 456889999999999998753
No 255
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=52.66 E-value=15 Score=28.76 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=17.2
Q ss_pred CCCCCcEEEEcccHHHHHhh
Q 046761 87 VSSDPCVGIIGGGMARLALS 106 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA 106 (109)
+..+.+|+|+|+|..|+.++
T Consensus 185 ~~~g~~VlV~G~g~vG~~a~ 204 (369)
T cd08301 185 VKKGSTVAIFGLGAVGLAVA 204 (369)
T ss_pred CCCCCEEEEECCCHHHHHHH
Confidence 56688999999999999865
No 256
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=52.58 E-value=12 Score=32.35 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=16.6
Q ss_pred CCCCCcEEEEcccHHHHHh
Q 046761 87 VSSDPCVGIIGGGMARLAL 105 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLac 105 (109)
...+-+|+|+|+||.||..
T Consensus 167 vk~Gs~vLV~GAGPIGl~t 185 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLT 185 (354)
T ss_pred cccCCeEEEECCcHHHHHH
Confidence 5678899999999999864
No 257
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=52.26 E-value=14 Score=28.96 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=17.7
Q ss_pred CCCCCcEEEEcccHHHHHhhh
Q 046761 87 VSSDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~ 107 (109)
+..+.+|+|+|+|..|+.++.
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~ 202 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIM 202 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHH
Confidence 566889999999999998753
No 258
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=52.19 E-value=15 Score=28.86 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=17.9
Q ss_pred CCCCCcEEEEcccHHHHHhhh
Q 046761 87 VSSDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~ 107 (109)
+..+.+|+|+|+|..|+.++.
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~ 204 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQ 204 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHH
Confidence 566889999999999998753
No 259
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=52.02 E-value=8 Score=35.82 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=19.4
Q ss_pred CCCCCCcEEEEcccHHHHHhhhc
Q 046761 86 PVSSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 86 ~~~~~kkVAVIGgGpAGLacA~e 108 (109)
..-.+-+|+|.|+|-||++||--
T Consensus 181 ~~~~~~~iv~~GaGaag~~~a~~ 203 (752)
T PRK07232 181 KKIEDVKIVVSGAGAAAIACLNL 203 (752)
T ss_pred CChhhcEEEEECccHHHHHHHHH
Confidence 35567899999999999999853
No 260
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=52.01 E-value=8.7 Score=28.93 Aligned_cols=21 Identities=14% Similarity=0.029 Sum_probs=17.2
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
.+.+|.|||.|-.|-.+|..|
T Consensus 20 ~~s~VlIiG~gglG~evak~L 40 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNL 40 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHH
Confidence 567899999999998887543
No 261
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=51.92 E-value=11 Score=34.52 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=19.9
Q ss_pred CCCCCcEEEEcccHHHHHhhhcC
Q 046761 87 VSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~eL 109 (109)
.....+.+|||||-||-..|..|
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarL 76 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARL 76 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhh
Confidence 56677899999999999998765
No 262
>PRK12861 malic enzyme; Reviewed
Probab=51.91 E-value=7 Score=36.37 Aligned_cols=22 Identities=27% Similarity=0.131 Sum_probs=18.8
Q ss_pred CCCCCcEEEEcccHHHHHhhhc
Q 046761 87 VSSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~e 108 (109)
.-.+-+|+|.|+|-||++||--
T Consensus 186 ~l~d~~iv~~GAGaAg~~ia~~ 207 (764)
T PRK12861 186 SIKEVKVVTSGAGAAALACLDL 207 (764)
T ss_pred ChhHcEEEEECHhHHHHHHHHH
Confidence 4567899999999999999853
No 263
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=51.88 E-value=12 Score=30.01 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=18.6
Q ss_pred CCCCcEEEEcccHHHHHhhhcC
Q 046761 88 SSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~eL 109 (109)
...++|+|||+|..|...|-.|
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L 250 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLL 250 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHH
Confidence 4578999999999999987654
No 264
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=51.63 E-value=9 Score=29.89 Aligned_cols=20 Identities=35% Similarity=0.305 Sum_probs=15.4
Q ss_pred CCCCCcEEEEcccHHHHHhh
Q 046761 87 VSSDPCVGIIGGGMARLALS 106 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA 106 (109)
.++.++|.|||+|--|++..
T Consensus 74 ~~~p~~VLiiGgG~G~~~~e 93 (246)
T PF01564_consen 74 HPNPKRVLIIGGGDGGTARE 93 (246)
T ss_dssp SSST-EEEEEESTTSHHHHH
T ss_pred CCCcCceEEEcCCChhhhhh
Confidence 45899999999998877654
No 265
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=51.41 E-value=9.1 Score=34.21 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=20.1
Q ss_pred CCCCCCcEEEEcccHHHHHhhhcC
Q 046761 86 PVSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 86 ~~~~~kkVAVIGgGpAGLacA~eL 109 (109)
......+|+|||+|-.|+.+|.+|
T Consensus 209 ~~~~~~~vV~vG~G~ig~Evaa~l 232 (478)
T KOG1336|consen 209 AIQLGGKVVCVGGGFIGMEVAAAL 232 (478)
T ss_pred HhccCceEEEECchHHHHHHHHHH
Confidence 344588999999999999998765
No 266
>PRK14031 glutamate dehydrogenase; Provisional
Probab=51.40 E-value=10 Score=33.06 Aligned_cols=22 Identities=9% Similarity=-0.018 Sum_probs=19.2
Q ss_pred CCCCcEEEEcccHHHHHhhhcC
Q 046761 88 SSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~eL 109 (109)
..+++|+|.|.|-.|..+|..|
T Consensus 226 l~g~rVaVQGfGNVG~~aA~~L 247 (444)
T PRK14031 226 LKGKVCLVSGSGNVAQYTAEKV 247 (444)
T ss_pred cCCCEEEEECCCHHHHHHHHHH
Confidence 5889999999999999988643
No 267
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=50.88 E-value=16 Score=27.37 Aligned_cols=19 Identities=26% Similarity=0.198 Sum_probs=15.9
Q ss_pred CCCcEEEEcccHHHHHhhh
Q 046761 89 SDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~ 107 (109)
...+|+|||+|-.|.+.+.
T Consensus 83 ~~~rV~IIGaG~iG~~l~~ 101 (213)
T PRK05472 83 RTWNVALVGAGNLGRALLN 101 (213)
T ss_pred CCcEEEEECCCHHHHHHHH
Confidence 4568999999999987764
No 268
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=50.82 E-value=16 Score=28.46 Aligned_cols=20 Identities=15% Similarity=0.187 Sum_probs=16.9
Q ss_pred CCCCCcEEEEcccHHHHHhh
Q 046761 87 VSSDPCVGIIGGGMARLALS 106 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA 106 (109)
+..+.+|.|+|+|..|+.++
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~ 182 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTA 182 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHH
Confidence 45688999999999998764
No 269
>PRK14982 acyl-ACP reductase; Provisional
Probab=50.60 E-value=10 Score=31.72 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=17.5
Q ss_pred CCCCcEEEEcc-cHHHHHhhhc
Q 046761 88 SSDPCVGIIGG-GMARLALSLV 108 (109)
Q Consensus 88 ~~~kkVAVIGg-GpAGLacA~e 108 (109)
..+++|+|+|| |-.|-.+|-.
T Consensus 153 l~~k~VLVtGAtG~IGs~lar~ 174 (340)
T PRK14982 153 LSKATVAVVGATGDIGSAVCRW 174 (340)
T ss_pred cCCCEEEEEccChHHHHHHHHH
Confidence 57799999998 8999888754
No 270
>PRK08291 ectoine utilization protein EutC; Validated
Probab=50.44 E-value=12 Score=30.15 Aligned_cols=20 Identities=15% Similarity=0.124 Sum_probs=16.0
Q ss_pred CCCCcEEEEcccHHHHHhhh
Q 046761 88 SSDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~ 107 (109)
+..++|+|||+|..|.+.+.
T Consensus 130 ~~~~~v~IiGaG~~a~~~~~ 149 (330)
T PRK08291 130 EDASRAAVIGAGEQARLQLE 149 (330)
T ss_pred CCCCEEEEECCCHHHHHHHH
Confidence 45579999999999987543
No 271
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=50.39 E-value=12 Score=29.01 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=18.9
Q ss_pred CCCCcEEEEcccHHHHHhhhcC
Q 046761 88 SSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~eL 109 (109)
..+++|+|+|-|-.|..+|..|
T Consensus 21 l~g~~vaIqGfGnVG~~~a~~L 42 (217)
T cd05211 21 LEGLTVAVQGLGNVGWGLAKKL 42 (217)
T ss_pred cCCCEEEEECCCHHHHHHHHHH
Confidence 4689999999999999988654
No 272
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=50.27 E-value=12 Score=30.02 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=16.7
Q ss_pred CCCCcEEEEcccHHHHHhhhc
Q 046761 88 SSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~e 108 (109)
+..++|+|||+|..+...+..
T Consensus 127 ~~~~~v~iiGaG~qA~~~~~a 147 (326)
T TIGR02992 127 EDSSVVAIFGAGMQARLQLEA 147 (326)
T ss_pred CCCcEEEEECCCHHHHHHHHH
Confidence 456799999999999776643
No 273
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=50.11 E-value=13 Score=32.33 Aligned_cols=19 Identities=37% Similarity=0.480 Sum_probs=14.4
Q ss_pred CCCCcEEEEccc-HHHHHhh
Q 046761 88 SSDPCVGIIGGG-MARLALS 106 (109)
Q Consensus 88 ~~~kkVAVIGgG-pAGLacA 106 (109)
-.+++|.|||+| |+=|.|.
T Consensus 176 L~~~~vlvIGAGem~~lva~ 195 (414)
T COG0373 176 LKDKKVLVIGAGEMGELVAK 195 (414)
T ss_pred cccCeEEEEcccHHHHHHHH
Confidence 378999999999 5555554
No 274
>PLN02827 Alcohol dehydrogenase-like
Probab=49.65 E-value=17 Score=29.06 Aligned_cols=20 Identities=35% Similarity=0.446 Sum_probs=17.3
Q ss_pred CCCCCcEEEEcccHHHHHhh
Q 046761 87 VSSDPCVGIIGGGMARLALS 106 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA 106 (109)
+..+.+|+|+|+|..|+.++
T Consensus 191 ~~~g~~VlV~G~G~vG~~~i 210 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVA 210 (378)
T ss_pred CCCCCEEEEECCCHHHHHHH
Confidence 56688999999999998864
No 275
>PRK13243 glyoxylate reductase; Reviewed
Probab=48.34 E-value=12 Score=30.30 Aligned_cols=22 Identities=27% Similarity=0.228 Sum_probs=18.7
Q ss_pred CCCCCcEEEEcccHHHHHhhhc
Q 046761 87 VSSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~e 108 (109)
.-.+++|.|||-|-.|...|-.
T Consensus 147 ~L~gktvgIiG~G~IG~~vA~~ 168 (333)
T PRK13243 147 DVYGKTIGIIGFGRIGQAVARR 168 (333)
T ss_pred CCCCCEEEEECcCHHHHHHHHH
Confidence 3478999999999999988754
No 276
>PRK08223 hypothetical protein; Validated
Probab=48.10 E-value=12 Score=30.87 Aligned_cols=21 Identities=29% Similarity=0.169 Sum_probs=17.3
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
...+|+|||+|-.|-.+|..|
T Consensus 26 ~~s~VlIvG~GGLGs~va~~L 46 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTL 46 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHH
Confidence 567899999998888887654
No 277
>PRK13529 malate dehydrogenase; Provisional
Probab=47.59 E-value=11 Score=34.22 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=18.9
Q ss_pred CCCCCcEEEEcccHHHHHhhhc
Q 046761 87 VSSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~e 108 (109)
.-.+-+|+|.|+|-||+.+|.-
T Consensus 292 ~l~d~riv~~GAGsAgiGia~l 313 (563)
T PRK13529 292 PLSDQRIVFLGAGSAGCGIADQ 313 (563)
T ss_pred ChhhcEEEEECCCHHHHHHHHH
Confidence 4567899999999999999853
No 278
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=47.43 E-value=24 Score=29.98 Aligned_cols=21 Identities=33% Similarity=0.368 Sum_probs=15.0
Q ss_pred CCCCCcEEEEcccH----HHHHhhh
Q 046761 87 VSSDPCVGIIGGGM----ARLALSL 107 (109)
Q Consensus 87 ~~~~kkVAVIGgGp----AGLacA~ 107 (109)
.....+|++||||- ++|++++
T Consensus 84 ~~~~~~VlCIGGGAGAElVAlAa~~ 108 (315)
T PF11312_consen 84 EKKSLRVLCIGGGAGAELVALAAAF 108 (315)
T ss_pred cccCceEEEECCChHHHHHHHHHHH
Confidence 45568999999998 4555443
No 279
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=46.92 E-value=10 Score=35.93 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=18.1
Q ss_pred CCCCcEEEEcccHHHHHhhhcC
Q 046761 88 SSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~eL 109 (109)
...++-+|||||+-||-||..|
T Consensus 143 r~~~~avVIGGGLLGlEaA~~L 164 (793)
T COG1251 143 RNKKKAVVIGGGLLGLEAARGL 164 (793)
T ss_pred hccCCcEEEccchhhhHHHHHH
Confidence 3455689999999999999765
No 280
>PLN02256 arogenate dehydrogenase
Probab=46.77 E-value=14 Score=29.88 Aligned_cols=20 Identities=30% Similarity=0.265 Sum_probs=16.1
Q ss_pred CCCCcEEEEcccHHHHHhhh
Q 046761 88 SSDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~ 107 (109)
....+|+|||.|..|-+.|.
T Consensus 34 ~~~~kI~IIG~G~mG~slA~ 53 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAK 53 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHH
Confidence 45678999999998877664
No 281
>PRK08618 ornithine cyclodeaminase; Validated
Probab=46.58 E-value=14 Score=29.57 Aligned_cols=20 Identities=15% Similarity=0.109 Sum_probs=15.8
Q ss_pred CCCCCcEEEEcccHHHHHhh
Q 046761 87 VSSDPCVGIIGGGMARLALS 106 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA 106 (109)
.+..++|+|||+|..|...+
T Consensus 124 ~~~~~~v~iiGaG~~a~~~~ 143 (325)
T PRK08618 124 REDAKTLCLIGTGGQAKGQL 143 (325)
T ss_pred CCCCcEEEEECCcHHHHHHH
Confidence 34678999999999986544
No 282
>PRK07340 ornithine cyclodeaminase; Validated
Probab=46.46 E-value=15 Score=29.43 Aligned_cols=22 Identities=18% Similarity=0.075 Sum_probs=17.6
Q ss_pred CCCCCcEEEEcccHHHHHhhhc
Q 046761 87 VSSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~e 108 (109)
.+..++|+|||+|..|...+..
T Consensus 122 ~~~~~~v~IiGaG~qa~~~~~a 143 (304)
T PRK07340 122 PAPPGDLLLIGTGVQARAHLEA 143 (304)
T ss_pred CCCCCEEEEECCcHHHHHHHHH
Confidence 3567899999999999876643
No 283
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=46.22 E-value=13 Score=27.98 Aligned_cols=20 Identities=25% Similarity=0.235 Sum_probs=16.3
Q ss_pred CCCcEEEEcccHHHHHhhhc
Q 046761 89 SDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~e 108 (109)
.+.+|.|||.|-.|-.+|-.
T Consensus 18 ~~s~VlviG~gglGsevak~ 37 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKN 37 (198)
T ss_pred hhCcEEEECCCHHHHHHHHH
Confidence 45789999999988887754
No 284
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=45.93 E-value=12 Score=33.90 Aligned_cols=22 Identities=14% Similarity=0.244 Sum_probs=18.7
Q ss_pred CCCCCcEEEEcccHHHHHhhhc
Q 046761 87 VSSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~e 108 (109)
.-++-+|++.|+|-||+.+|.-
T Consensus 294 ~l~d~riv~~GAGsAgiGia~l 315 (559)
T PTZ00317 294 PPEEQRIVFFGAGSAAIGVANN 315 (559)
T ss_pred ChhhcEEEEECCCHHHHHHHHH
Confidence 4567899999999999999853
No 285
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=45.65 E-value=18 Score=25.52 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=17.2
Q ss_pred CCCCCcEEEEcccHHHHHhhh
Q 046761 87 VSSDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~ 107 (109)
+..+.+|+|+|+|..|++++.
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~ 152 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQ 152 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHH
Confidence 367889999999998888754
No 286
>PLN02928 oxidoreductase family protein
Probab=44.58 E-value=17 Score=29.88 Aligned_cols=22 Identities=23% Similarity=0.147 Sum_probs=19.0
Q ss_pred CCCCCcEEEEcccHHHHHhhhc
Q 046761 87 VSSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~e 108 (109)
.-.+++|.|||-|-.|..+|..
T Consensus 156 ~l~gktvGIiG~G~IG~~vA~~ 177 (347)
T PLN02928 156 TLFGKTVFILGYGAIGIELAKR 177 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHH
Confidence 4678999999999999988754
No 287
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=44.18 E-value=22 Score=28.74 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=15.9
Q ss_pred CCCCCcEEEEc-ccHHHHHhh
Q 046761 87 VSSDPCVGIIG-GGMARLALS 106 (109)
Q Consensus 87 ~~~~kkVAVIG-gGpAGLacA 106 (109)
+..+.+|+|+| +|+.|+.++
T Consensus 173 ~~~g~~VlV~G~~G~vG~~ai 193 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAI 193 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHH
Confidence 45567899998 599998875
No 288
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=43.99 E-value=19 Score=28.56 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=17.5
Q ss_pred CCCCCcEEEEcccHHHHHhhh
Q 046761 87 VSSDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~ 107 (109)
+..+.+|+|+|+|..|++++.
T Consensus 188 ~~~g~~VlV~G~g~vG~~~~~ 208 (373)
T cd08299 188 VTPGSTCAVFGLGGVGLSAIM 208 (373)
T ss_pred CCCCCEEEEECCCHHHHHHHH
Confidence 456789999999999998754
No 289
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=43.97 E-value=20 Score=26.90 Aligned_cols=21 Identities=14% Similarity=0.219 Sum_probs=17.9
Q ss_pred CCCCCcEEEEcc-cHHHHHhhh
Q 046761 87 VSSDPCVGIIGG-GMARLALSL 107 (109)
Q Consensus 87 ~~~~kkVAVIGg-GpAGLacA~ 107 (109)
...+.+|+|+|+ |..|++++.
T Consensus 160 ~~~g~~vlI~g~~g~vg~~~~~ 181 (325)
T cd08264 160 LGPGETVVVFGASGNTGIFAVQ 181 (325)
T ss_pred CCCCCEEEEECCCchHHHHHHH
Confidence 457889999998 999999864
No 290
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=43.78 E-value=16 Score=30.86 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=31.2
Q ss_pred CCCccchhhhhhhhhc-ccc-ccCCCCCCCCcEEEEcccHHHHHhhhc
Q 046761 63 SYGSSRRSALKKTFAQ-EQV-TFTTPVSSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 63 ~~~~sr~sitdk~F~q-~qv-~f~~~~~~~kkVAVIGgGpAGLacA~e 108 (109)
-+|..-.++-|+.+.. -.+ ......-.+++|.|||.|-.|...|..
T Consensus 87 apg~na~aVAE~v~~~lL~l~r~~g~~l~gktvGIIG~G~IG~~va~~ 134 (381)
T PRK00257 87 APGCNARGVVDYVLGSLLTLAEREGVDLAERTYGVVGAGHVGGRLVRV 134 (381)
T ss_pred CCCcChHHHHHHHHHHHHHHhcccCCCcCcCEEEEECCCHHHHHHHHH
Confidence 4677777888877654 111 011234578999999999999887753
No 291
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=43.76 E-value=22 Score=28.65 Aligned_cols=20 Identities=20% Similarity=0.077 Sum_probs=16.8
Q ss_pred CCCCcEEEEcccHHHHHhhh
Q 046761 88 SSDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~ 107 (109)
..+..|+|.|+|+.|+.++.
T Consensus 177 ~~g~~VlV~G~G~vG~~avq 196 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVK 196 (375)
T ss_pred CCCCEEEEEcccHHHHHHHH
Confidence 35789999999999998753
No 292
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=42.51 E-value=16 Score=30.32 Aligned_cols=21 Identities=29% Similarity=0.259 Sum_probs=17.6
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
.+.+|+|||.|=.|-.+|..|
T Consensus 41 ~~~~VlviG~GGlGs~va~~L 61 (392)
T PRK07878 41 KNARVLVIGAGGLGSPTLLYL 61 (392)
T ss_pred hcCCEEEECCCHHHHHHHHHH
Confidence 567999999999998887654
No 293
>PRK07411 hypothetical protein; Validated
Probab=42.23 E-value=8.7 Score=32.00 Aligned_cols=21 Identities=33% Similarity=0.248 Sum_probs=16.8
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
...+|.|||.|--|-.+|..|
T Consensus 37 ~~~~VlivG~GGlG~~va~~L 57 (390)
T PRK07411 37 KAASVLCIGTGGLGSPLLLYL 57 (390)
T ss_pred hcCcEEEECCCHHHHHHHHHH
Confidence 567899999998888777643
No 294
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.16 E-value=16 Score=30.08 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=18.5
Q ss_pred CCCCcEEEEc-ccHHHHHhhhcC
Q 046761 88 SSDPCVGIIG-GGMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIG-gGpAGLacA~eL 109 (109)
-.+|+|+||| +|..|...|..|
T Consensus 156 ~~Gk~V~viGrs~~mG~PmA~~L 178 (296)
T PRK14188 156 LSGLNAVVIGRSNLVGKPMAQLL 178 (296)
T ss_pred CCCCEEEEEcCCcchHHHHHHHH
Confidence 4799999999 999998887643
No 295
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=41.88 E-value=17 Score=30.57 Aligned_cols=20 Identities=15% Similarity=0.109 Sum_probs=16.0
Q ss_pred CCCCcEEEEcccHHHHHhhh
Q 046761 88 SSDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~ 107 (109)
..+++|.|||+|-.|-.+|-
T Consensus 172 l~~k~vLvIGaGem~~l~a~ 191 (338)
T PRK00676 172 SKKASLLFIGYSEINRKVAY 191 (338)
T ss_pred ccCCEEEEEcccHHHHHHHH
Confidence 57899999999977665554
No 296
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.86 E-value=15 Score=30.57 Aligned_cols=22 Identities=14% Similarity=0.241 Sum_probs=18.0
Q ss_pred CCCCcEEEEccc-HHHHHhhhcC
Q 046761 88 SSDPCVGIIGGG-MARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGgG-pAGLacA~eL 109 (109)
-.+|+|+|||-| ..|...|..|
T Consensus 157 l~Gk~V~vIG~s~ivG~PmA~~L 179 (301)
T PRK14194 157 LTGKHAVVIGRSNIVGKPMAALL 179 (301)
T ss_pred CCCCEEEEECCCCccHHHHHHHH
Confidence 478999999996 8898877643
No 297
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.79 E-value=17 Score=29.93 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=17.0
Q ss_pred CCCCcEEEEccc-HHHHHhhhc
Q 046761 88 SSDPCVGIIGGG-MARLALSLV 108 (109)
Q Consensus 88 ~~~kkVAVIGgG-pAGLacA~e 108 (109)
-.+++|+|||.| ..|.-.|.-
T Consensus 155 l~Gk~vvVvGrs~~VG~Pla~l 176 (285)
T PRK14191 155 IKGKDVVIIGASNIVGKPLAML 176 (285)
T ss_pred CCCCEEEEECCCchhHHHHHHH
Confidence 368999999999 888776653
No 298
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=41.61 E-value=15 Score=32.93 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=20.0
Q ss_pred CCCCCCcEEEEcccHHHHHhhhcC
Q 046761 86 PVSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 86 ~~~~~kkVAVIGgGpAGLacA~eL 109 (109)
..-.+++|+|||-|--|.+-|.-|
T Consensus 32 ~~LkgKtIaIIGyGSqG~AqAlNL 55 (487)
T PRK05225 32 SYLKGKKIVIVGCGAQGLNQGLNM 55 (487)
T ss_pred HHhCCCEEEEEccCHHHHHHhCCC
Confidence 456789999999999999877644
No 299
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=41.39 E-value=27 Score=28.49 Aligned_cols=20 Identities=35% Similarity=0.393 Sum_probs=17.3
Q ss_pred CCCCCcEEEEcccHHHHHhh
Q 046761 87 VSSDPCVGIIGGGMARLALS 106 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA 106 (109)
+..+.+|+|+|+|+.|+.++
T Consensus 183 ~~~g~~VlV~G~G~iG~~ai 202 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAA 202 (393)
T ss_pred CCCCCEEEEECCCHHHHHHH
Confidence 46688999999999999875
No 300
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=41.34 E-value=23 Score=26.17 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=17.7
Q ss_pred CCCCCcEEEEcc-cHHHHHhhhc
Q 046761 87 VSSDPCVGIIGG-GMARLALSLV 108 (109)
Q Consensus 87 ~~~~kkVAVIGg-GpAGLacA~e 108 (109)
+..+.+|+|.|+ |..|++++..
T Consensus 160 ~~~~~~vlI~ga~g~vG~~~~~~ 182 (332)
T cd08259 160 VKKGDTVLVTGAGGGVGIHAIQL 182 (332)
T ss_pred CCCCCEEEEECCCCHHHHHHHHH
Confidence 456789999997 8999998643
No 301
>PRK05866 short chain dehydrogenase; Provisional
Probab=40.15 E-value=21 Score=27.50 Aligned_cols=21 Identities=10% Similarity=-0.012 Sum_probs=15.9
Q ss_pred CCCcEEEEcc-cHHHHHhhhcC
Q 046761 89 SDPCVGIIGG-GMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGg-GpAGLacA~eL 109 (109)
.+++|+|+|| |-.|.++|.+|
T Consensus 39 ~~k~vlItGasggIG~~la~~L 60 (293)
T PRK05866 39 TGKRILLTGASSGIGEAAAEQF 60 (293)
T ss_pred CCCEEEEeCCCcHHHHHHHHHH
Confidence 4578999997 78888887543
No 302
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=40.13 E-value=21 Score=27.75 Aligned_cols=22 Identities=23% Similarity=0.108 Sum_probs=18.8
Q ss_pred CCCCcEEEEcccHHHHHhhhcC
Q 046761 88 SSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~eL 109 (109)
..+++|+|+|-|-.|..+|..|
T Consensus 29 l~~~~v~I~G~G~VG~~~a~~L 50 (227)
T cd01076 29 LAGARVAIQGFGNVGSHAARFL 50 (227)
T ss_pred ccCCEEEEECCCHHHHHHHHHH
Confidence 4689999999999999988643
No 303
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=40.12 E-value=22 Score=34.26 Aligned_cols=23 Identities=17% Similarity=0.099 Sum_probs=18.5
Q ss_pred CCCCCCcEEEEcccHHHHHhhhc
Q 046761 86 PVSSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 86 ~~~~~kkVAVIGgGpAGLacA~e 108 (109)
.....++|+|||+|..|-..|..
T Consensus 565 ~~~~~~rIlVLGAG~VG~~~a~~ 587 (1042)
T PLN02819 565 VTKKSQNVLILGAGRVCRPAAEY 587 (1042)
T ss_pred ccccCCcEEEECCCHHHHHHHHH
Confidence 35568899999999999877654
No 304
>PRK10083 putative oxidoreductase; Provisional
Probab=38.92 E-value=33 Score=25.95 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=16.9
Q ss_pred CCCCCcEEEEcccHHHHHhh
Q 046761 87 VSSDPCVGIIGGGMARLALS 106 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA 106 (109)
...+.+|+|+|+|..|++++
T Consensus 158 ~~~g~~vlI~g~g~vG~~~~ 177 (339)
T PRK10083 158 PTEQDVALIYGAGPVGLTIV 177 (339)
T ss_pred CCCCCEEEEECCCHHHHHHH
Confidence 45678999999999999864
No 305
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=38.77 E-value=33 Score=26.35 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=17.7
Q ss_pred CCCCCcEEEEcccHHHHHhhh
Q 046761 87 VSSDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~ 107 (109)
+..+.+|.|.|+|..|++++.
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~ 184 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVA 184 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHH
Confidence 566889999999999998753
No 306
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=38.20 E-value=31 Score=27.16 Aligned_cols=19 Identities=26% Similarity=0.081 Sum_probs=16.3
Q ss_pred CCCCcEEEEcccHHHHHhh
Q 046761 88 SSDPCVGIIGGGMARLALS 106 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA 106 (109)
..+.+|+|+|+|+.|+.++
T Consensus 179 ~~g~~vlV~G~G~vG~~av 197 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGV 197 (357)
T ss_pred CCCCeEEEEcccHHHHHHH
Confidence 4678999999999999875
No 307
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=38.13 E-value=34 Score=26.88 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=17.7
Q ss_pred CCCCCcEEEEcccHHHHHhhh
Q 046761 87 VSSDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~ 107 (109)
+..+.+|.|+|+|+.|++++.
T Consensus 181 ~~~g~~vlI~g~g~vG~~a~~ 201 (365)
T cd05279 181 VTPGSTCAVFGLGGVGLSVIM 201 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHH
Confidence 556889999999999998753
No 308
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=38.08 E-value=40 Score=21.43 Aligned_cols=36 Identities=14% Similarity=0.243 Sum_probs=22.3
Q ss_pred ccchhhhhhhhhccccccCCCCCCCCcEEEEcccHHHHHhhh
Q 046761 66 SSRRSALKKTFAQEQVTFTTPVSSDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 66 ~sr~sitdk~F~q~qv~f~~~~~~~kkVAVIGgGpAGLacA~ 107 (109)
.+++.+.+..+++.. ...+.+|+-||.|...+++.+
T Consensus 2 ~~~~~~~~~~~~~~~------~~~~~~vldlG~G~G~~~~~l 37 (124)
T TIGR02469 2 MTKREVRALTLSKLR------LRPGDVLWDIGAGSGSITIEA 37 (124)
T ss_pred CchHHHHHHHHHHcC------CCCCCEEEEeCCCCCHHHHHH
Confidence 344555444444322 234679999999998877643
No 309
>PRK07574 formate dehydrogenase; Provisional
Probab=37.80 E-value=22 Score=30.05 Aligned_cols=21 Identities=33% Similarity=0.390 Sum_probs=18.1
Q ss_pred CCCCcEEEEcccHHHHHhhhc
Q 046761 88 SSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~e 108 (109)
-.+++|.|||-|-.|...|..
T Consensus 190 L~gktVGIvG~G~IG~~vA~~ 210 (385)
T PRK07574 190 LEGMTVGIVGAGRIGLAVLRR 210 (385)
T ss_pred cCCCEEEEECCCHHHHHHHHH
Confidence 578899999999999987754
No 310
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=37.64 E-value=28 Score=25.10 Aligned_cols=21 Identities=10% Similarity=0.031 Sum_probs=17.2
Q ss_pred CCCCCcEEEEcccHHHHHhhh
Q 046761 87 VSSDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~ 107 (109)
+..+.+|+.||+|.-|++.++
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l 50 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVA 50 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHH
Confidence 567889999999999987543
No 311
>PRK06487 glycerate dehydrogenase; Provisional
Probab=37.55 E-value=26 Score=28.30 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=19.0
Q ss_pred CCCCCcEEEEcccHHHHHhhhc
Q 046761 87 VSSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~e 108 (109)
.-.+++|.|||-|-.|..+|-.
T Consensus 145 ~l~gktvgIiG~G~IG~~vA~~ 166 (317)
T PRK06487 145 ELEGKTLGLLGHGELGGAVARL 166 (317)
T ss_pred ccCCCEEEEECCCHHHHHHHHH
Confidence 4678999999999999988754
No 312
>PRK06932 glycerate dehydrogenase; Provisional
Probab=37.42 E-value=26 Score=28.31 Aligned_cols=22 Identities=14% Similarity=0.273 Sum_probs=18.7
Q ss_pred CCCCCcEEEEcccHHHHHhhhc
Q 046761 87 VSSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~e 108 (109)
.-.+++|.|||-|-.|-.+|-.
T Consensus 144 ~l~gktvgIiG~G~IG~~va~~ 165 (314)
T PRK06932 144 DVRGSTLGVFGKGCLGTEVGRL 165 (314)
T ss_pred ccCCCEEEEECCCHHHHHHHHH
Confidence 3578999999999999988753
No 313
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=37.38 E-value=21 Score=30.35 Aligned_cols=20 Identities=20% Similarity=0.051 Sum_probs=16.0
Q ss_pred CCCcEEEEcccHHHHHhhhc
Q 046761 89 SDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~e 108 (109)
..++|+|||+|.+|...+.+
T Consensus 142 ~~rrVLIvGaG~~g~~l~~~ 161 (463)
T PRK10124 142 NKRMVAVAGDLPAGQMLLES 161 (463)
T ss_pred CCCcEEEEECCHHHHHHHHH
Confidence 35689999999999876644
No 314
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=37.30 E-value=32 Score=27.09 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=17.6
Q ss_pred CCCCCcEEEEcccHHHHHhhh
Q 046761 87 VSSDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~ 107 (109)
....++++|+|+|+.+.+.|-
T Consensus 97 ~~p~~~L~IfGaG~va~~la~ 117 (246)
T TIGR02964 97 APPAPHVVLFGAGHVGRALVR 117 (246)
T ss_pred cCCCCEEEEECCcHHHHHHHH
Confidence 456789999999999988763
No 315
>PLN02366 spermidine synthase
Probab=37.08 E-value=25 Score=28.73 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=15.3
Q ss_pred CCCCCcEEEEcccHHHHHh
Q 046761 87 VSSDPCVGIIGGGMARLAL 105 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLac 105 (109)
.+.+++|.|||+|--+++.
T Consensus 89 ~~~pkrVLiIGgG~G~~~r 107 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLR 107 (308)
T ss_pred CCCCCeEEEEcCCccHHHH
Confidence 4678999999999866653
No 316
>PRK07877 hypothetical protein; Provisional
Probab=36.32 E-value=18 Score=33.33 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=17.0
Q ss_pred CCCCcEEEEcccHHHHHhhhcC
Q 046761 88 SSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~eL 109 (109)
-...+|+|||.| .|=.||..|
T Consensus 105 L~~~~V~IvG~G-lGs~~a~~L 125 (722)
T PRK07877 105 LGRLRIGVVGLS-VGHAIAHTL 125 (722)
T ss_pred HhcCCEEEEEec-HHHHHHHHH
Confidence 356789999999 798888754
No 317
>PRK06196 oxidoreductase; Provisional
Probab=36.28 E-value=25 Score=27.02 Aligned_cols=21 Identities=24% Similarity=0.213 Sum_probs=16.1
Q ss_pred CCCcEEEEcc-cHHHHHhhhcC
Q 046761 89 SDPCVGIIGG-GMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGg-GpAGLacA~eL 109 (109)
.++.|+|.|| |-.|.++|.+|
T Consensus 25 ~~k~vlITGasggIG~~~a~~L 46 (315)
T PRK06196 25 SGKTAIVTGGYSGLGLETTRAL 46 (315)
T ss_pred CCCEEEEeCCCchHHHHHHHHH
Confidence 4678999998 67888887653
No 318
>cd07367 CarBb CarBb is the B subunit of the Class III Extradiol ring-cleavage dioxygenase, 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBb is the B subunit of 2-aminophenol 1,6-dioxygenase (CarB), which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. It is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, it has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=36.21 E-value=21 Score=28.22 Aligned_cols=12 Identities=25% Similarity=0.379 Sum_probs=10.6
Q ss_pred CCCcEEEEcccH
Q 046761 89 SDPCVGIIGGGM 100 (109)
Q Consensus 89 ~~kkVAVIGgGp 100 (109)
.+++|+|||+|-
T Consensus 169 ~d~rV~iiaSGg 180 (268)
T cd07367 169 AGERVAVIAAGG 180 (268)
T ss_pred CCCcEEEEEccc
Confidence 789999999984
No 319
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=35.97 E-value=26 Score=28.43 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=18.4
Q ss_pred CCCCCcEEEEcccHHHHHhhhc
Q 046761 87 VSSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~e 108 (109)
.-.+++|.|||-|-.|..+|-.
T Consensus 133 ~l~g~tvgIvG~G~IG~~vA~~ 154 (312)
T PRK15469 133 HREDFTIGILGAGVLGSKVAQS 154 (312)
T ss_pred CcCCCEEEEECCCHHHHHHHHH
Confidence 3478999999999999887753
No 320
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=35.24 E-value=26 Score=28.54 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=18.2
Q ss_pred CCCCCcEEEEcccHHHHHhhh
Q 046761 87 VSSDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~ 107 (109)
.-.+++|.|||-|-.|..+|-
T Consensus 142 ~L~gktvGIiG~G~IG~~va~ 162 (323)
T PRK15409 142 DVHHKTLGIVGMGRIGMALAQ 162 (323)
T ss_pred CCCCCEEEEEcccHHHHHHHH
Confidence 357899999999999998874
No 321
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=35.24 E-value=32 Score=26.02 Aligned_cols=21 Identities=29% Similarity=0.264 Sum_probs=17.6
Q ss_pred CCCCCcEEEEcc-cHHHHHhhh
Q 046761 87 VSSDPCVGIIGG-GMARLALSL 107 (109)
Q Consensus 87 ~~~~kkVAVIGg-GpAGLacA~ 107 (109)
+..+.+|.|+|+ |..|++++.
T Consensus 175 ~~~g~~vlI~g~~g~ig~~~~~ 196 (350)
T cd08274 175 VGAGETVLVTGASGGVGSALVQ 196 (350)
T ss_pred CCCCCEEEEEcCCcHHHHHHHH
Confidence 456889999999 999998754
No 322
>PRK09414 glutamate dehydrogenase; Provisional
Probab=34.93 E-value=27 Score=30.49 Aligned_cols=22 Identities=14% Similarity=-0.014 Sum_probs=19.2
Q ss_pred CCCCcEEEEcccHHHHHhhhcC
Q 046761 88 SSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~eL 109 (109)
..+++|||.|-|-.|..+|..|
T Consensus 230 l~g~rVaIqGfGnVG~~~A~~L 251 (445)
T PRK09414 230 FEGKRVVVSGSGNVAIYAIEKA 251 (445)
T ss_pred cCCCEEEEECCCHHHHHHHHHH
Confidence 5789999999999999998643
No 323
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=34.90 E-value=28 Score=28.16 Aligned_cols=23 Identities=22% Similarity=0.117 Sum_probs=19.4
Q ss_pred CCCCCcEEEEcccHHHHHhhhcC
Q 046761 87 VSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~eL 109 (109)
-..+++|+|.|-|-.|..+|..|
T Consensus 35 ~l~g~~vaIqGfGnVG~~~a~~L 57 (254)
T cd05313 35 TLKGKRVAISGSGNVAQYAAEKL 57 (254)
T ss_pred CcCCCEEEEECCCHHHHHHHHHH
Confidence 34789999999999999988643
No 324
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=34.56 E-value=27 Score=29.57 Aligned_cols=46 Identities=20% Similarity=0.187 Sum_probs=30.8
Q ss_pred CCCccchhhhhhhhhc-cccc-cCCCCCCCCcEEEEcccHHHHHhhhc
Q 046761 63 SYGSSRRSALKKTFAQ-EQVT-FTTPVSSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 63 ~~~~sr~sitdk~F~q-~qv~-f~~~~~~~kkVAVIGgGpAGLacA~e 108 (109)
-+|..-.++-|+.+.. -.+. .....-.+++|.|||-|-.|-..|-.
T Consensus 87 apg~na~aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~~ 134 (378)
T PRK15438 87 APGCNAIAVVEYVFSSLLMLAERDGFSLHDRTVGIVGVGNVGRRLQAR 134 (378)
T ss_pred CCCcCchHHHHHHHHHHHHHhccCCCCcCCCEEEEECcCHHHHHHHHH
Confidence 3677777887877763 1100 01124589999999999999887753
No 325
>PLN03139 formate dehydrogenase; Provisional
Probab=34.48 E-value=25 Score=29.80 Aligned_cols=22 Identities=23% Similarity=0.181 Sum_probs=18.8
Q ss_pred CCCCCcEEEEcccHHHHHhhhc
Q 046761 87 VSSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~e 108 (109)
.-.+++|.|||-|-.|...|-.
T Consensus 196 ~L~gktVGIVG~G~IG~~vA~~ 217 (386)
T PLN03139 196 DLEGKTVGTVGAGRIGRLLLQR 217 (386)
T ss_pred CCCCCEEEEEeecHHHHHHHHH
Confidence 4578999999999999988754
No 326
>PRK06128 oxidoreductase; Provisional
Probab=34.23 E-value=26 Score=26.75 Aligned_cols=21 Identities=14% Similarity=0.047 Sum_probs=16.0
Q ss_pred CCCcEEEEcc-cHHHHHhhhcC
Q 046761 89 SDPCVGIIGG-GMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGg-GpAGLacA~eL 109 (109)
.+|+|+|.|| |-.|.++|..|
T Consensus 54 ~~k~vlITGas~gIG~~~a~~l 75 (300)
T PRK06128 54 QGRKALITGADSGIGRATAIAF 75 (300)
T ss_pred CCCEEEEecCCCcHHHHHHHHH
Confidence 4688999986 77888887653
No 327
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=33.87 E-value=45 Score=25.16 Aligned_cols=21 Identities=14% Similarity=0.134 Sum_probs=17.3
Q ss_pred CCCCCcEEEEcccHHHHHhhh
Q 046761 87 VSSDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~ 107 (109)
+..+.+|+|.|+|..|++++.
T Consensus 160 ~~~g~~vlV~g~g~vG~~~~~ 180 (338)
T PRK09422 160 IKPGQWIAIYGAGGLGNLALQ 180 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHH
Confidence 456789999999999998753
No 328
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=33.81 E-value=31 Score=29.87 Aligned_cols=23 Identities=35% Similarity=0.303 Sum_probs=19.8
Q ss_pred CCCCCcEEEEcccHHHHHhhhcC
Q 046761 87 VSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~eL 109 (109)
+-.+|+|||||=|--|.+=|+-|
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNL 37 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNL 37 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhh
Confidence 66889999999999999887654
No 329
>PRK06153 hypothetical protein; Provisional
Probab=33.74 E-value=19 Score=31.23 Aligned_cols=22 Identities=18% Similarity=0.128 Sum_probs=17.7
Q ss_pred CCCCcEEEEcccHHHHHhhhcC
Q 046761 88 SSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~eL 109 (109)
-.+.+|+|||.|=.|-.+|..|
T Consensus 174 L~~~~VaIVG~GG~GS~Va~~L 195 (393)
T PRK06153 174 LEGQRIAIIGLGGTGSYILDLV 195 (393)
T ss_pred HhhCcEEEEcCCccHHHHHHHH
Confidence 3567999999999998877654
No 330
>PRK07985 oxidoreductase; Provisional
Probab=33.47 E-value=27 Score=26.75 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=15.7
Q ss_pred CCCcEEEEcc-cHHHHHhhhcC
Q 046761 89 SDPCVGIIGG-GMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGg-GpAGLacA~eL 109 (109)
.+++|+|+|| |-.|.++|.+|
T Consensus 48 ~~k~vlITGas~gIG~aia~~L 69 (294)
T PRK07985 48 KDRKALVTGGDSGIGRAAAIAY 69 (294)
T ss_pred CCCEEEEECCCCcHHHHHHHHH
Confidence 5678999996 67788777643
No 331
>PRK00811 spermidine synthase; Provisional
Probab=32.77 E-value=33 Score=27.15 Aligned_cols=19 Identities=32% Similarity=0.254 Sum_probs=15.2
Q ss_pred CCCCCcEEEEcccHHHHHh
Q 046761 87 VSSDPCVGIIGGGMARLAL 105 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLac 105 (109)
.+.+++|.|||+|--+++.
T Consensus 74 ~~~p~~VL~iG~G~G~~~~ 92 (283)
T PRK00811 74 HPNPKRVLIIGGGDGGTLR 92 (283)
T ss_pred CCCCCEEEEEecCchHHHH
Confidence 4678899999999877653
No 332
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=32.73 E-value=38 Score=25.58 Aligned_cols=21 Identities=19% Similarity=0.123 Sum_probs=17.5
Q ss_pred CCCCCcEEEEcccHHHHHhhh
Q 046761 87 VSSDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~ 107 (109)
+..+.+|.|.|+|..|++++.
T Consensus 165 ~~~~~~vlI~g~~~vg~~~~~ 185 (340)
T cd05284 165 LDPGSTVVVIGVGGLGHIAVQ 185 (340)
T ss_pred CCCCCEEEEEcCcHHHHHHHH
Confidence 456889999999999998753
No 333
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=32.28 E-value=37 Score=24.36 Aligned_cols=21 Identities=19% Similarity=0.071 Sum_probs=17.3
Q ss_pred CCCCCcEEEEcc-cHHHHHhhh
Q 046761 87 VSSDPCVGIIGG-GMARLALSL 107 (109)
Q Consensus 87 ~~~~kkVAVIGg-GpAGLacA~ 107 (109)
+..+.+|.|.|+ |..|++++.
T Consensus 142 ~~~~~~vlv~g~~g~~g~~~~~ 163 (309)
T cd05289 142 LKAGQTVLIHGAAGGVGSFAVQ 163 (309)
T ss_pred CCCCCEEEEecCCchHHHHHHH
Confidence 567789999997 999988754
No 334
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=32.25 E-value=26 Score=28.54 Aligned_cols=12 Identities=50% Similarity=0.595 Sum_probs=10.5
Q ss_pred CCCcEEEEcccH
Q 046761 89 SDPCVGIIGGGM 100 (109)
Q Consensus 89 ~~kkVAVIGgGp 100 (109)
-+|+|.|||||-
T Consensus 82 yGKRvIiiGGGA 93 (218)
T COG1707 82 YGKRVIIIGGGA 93 (218)
T ss_pred hCcEEEEECCch
Confidence 479999999995
No 335
>PLN02306 hydroxypyruvate reductase
Probab=32.15 E-value=32 Score=29.04 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=18.0
Q ss_pred CCCCCcEEEEcccHHHHHhhh
Q 046761 87 VSSDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~ 107 (109)
.-.+++|.|||-|-.|...|-
T Consensus 162 ~L~gktvGIiG~G~IG~~vA~ 182 (386)
T PLN02306 162 LLKGQTVGVIGAGRIGSAYAR 182 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHH
Confidence 357899999999999988774
No 336
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=32.15 E-value=38 Score=26.97 Aligned_cols=21 Identities=24% Similarity=0.245 Sum_probs=17.1
Q ss_pred CCCCCcEEEEcccHHHHHhhh
Q 046761 87 VSSDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~ 107 (109)
+..+.+|+|+|+|..|..++.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~ 202 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAAR 202 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHH
Confidence 456789999999999988753
No 337
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=32.04 E-value=13 Score=32.96 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=24.0
Q ss_pred CCccchhhhhhhhhccccccCCCCCCCCcEEEEcccHHHHHhh
Q 046761 64 YGSSRRSALKKTFAQEQVTFTTPVSSDPCVGIIGGGMARLALS 106 (109)
Q Consensus 64 ~~~sr~sitdk~F~q~qv~f~~~~~~~kkVAVIGgGpAGLacA 106 (109)
++.|||=++.++=.+.|..+ .+-+|.|||+|=-|--+|
T Consensus 45 ~RYsRQlilpe~gV~GQ~~L-----k~s~VLVVGaGGLGcPa~ 82 (427)
T KOG2017|consen 45 LRYSRQLILPEFGVHGQLSL-----KNSSVLVVGAGGLGCPAA 82 (427)
T ss_pred Hhhhheeecccccccccccc-----CCccEEEEccCCCCCHHH
Confidence 45566666666554455433 556899999996554433
No 338
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=31.87 E-value=50 Score=29.91 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=17.5
Q ss_pred CCCCCCcEEEEcccHHHHHhh
Q 046761 86 PVSSDPCVGIIGGGMARLALS 106 (109)
Q Consensus 86 ~~~~~kkVAVIGgGpAGLacA 106 (109)
.....|+|+|+|+|=+|.+..
T Consensus 51 ~~~kKk~vVVLGsGW~a~S~l 71 (491)
T KOG2495|consen 51 NGGKKKRVVVLGSGWGAISLL 71 (491)
T ss_pred CCCCCceEEEEcCchHHHHHH
Confidence 456789999999999998765
No 339
>PRK08324 short chain dehydrogenase; Validated
Probab=31.67 E-value=32 Score=30.28 Aligned_cols=21 Identities=19% Similarity=0.116 Sum_probs=17.2
Q ss_pred CCCcEEEEcc-cHHHHHhhhcC
Q 046761 89 SDPCVGIIGG-GMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGg-GpAGLacA~eL 109 (109)
.++.|+|+|| |..|+++|..|
T Consensus 421 ~gk~vLVTGasggIG~~la~~L 442 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRL 442 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHH
Confidence 5688999995 99999988653
No 340
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=31.55 E-value=38 Score=28.80 Aligned_cols=24 Identities=29% Similarity=0.242 Sum_probs=21.4
Q ss_pred CCCCCCcEEEEcccHHHHHhhhcC
Q 046761 86 PVSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 86 ~~~~~kkVAVIGgGpAGLacA~eL 109 (109)
.-+.+|+|.|||.|=.|-..|.+|
T Consensus 158 ~~~~gK~vgilG~G~IG~~ia~rL 181 (336)
T KOG0069|consen 158 YDLEGKTVGILGLGRIGKAIAKRL 181 (336)
T ss_pred ccccCCEEEEecCcHHHHHHHHhh
Confidence 567899999999999999998765
No 341
>PLN02712 arogenate dehydrogenase
Probab=31.25 E-value=31 Score=31.10 Aligned_cols=22 Identities=23% Similarity=0.114 Sum_probs=17.7
Q ss_pred CCCCCcEEEEcccHHHHHhhhc
Q 046761 87 VSSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~e 108 (109)
....++|+|||.|..|-+.|..
T Consensus 366 ~~~~~kIgIIGlG~mG~slA~~ 387 (667)
T PLN02712 366 DGSKLKIAIVGFGNFGQFLAKT 387 (667)
T ss_pred CCCCCEEEEEecCHHHHHHHHH
Confidence 4467899999999999877653
No 342
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=31.05 E-value=38 Score=28.97 Aligned_cols=20 Identities=20% Similarity=0.059 Sum_probs=17.2
Q ss_pred CCcEEEEcccHHHHHhhhcC
Q 046761 90 DPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 90 ~kkVAVIGgGpAGLacA~eL 109 (109)
+-+|+|+|.|..|...|.+|
T Consensus 417 ~~hiiI~G~G~~G~~la~~L 436 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKL 436 (558)
T ss_pred CCCEEEECCChHHHHHHHHH
Confidence 46899999999999988654
No 343
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=30.93 E-value=42 Score=25.65 Aligned_cols=21 Identities=14% Similarity=-0.002 Sum_probs=17.3
Q ss_pred CCCCCcEEEEcccHHHHHhhh
Q 046761 87 VSSDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~ 107 (109)
+..+.+|+|.|+|..|++++.
T Consensus 161 ~~~~~~vlV~g~g~iG~~~~~ 181 (333)
T cd08296 161 AKPGDLVAVQGIGGLGHLAVQ 181 (333)
T ss_pred CCCCCEEEEECCcHHHHHHHH
Confidence 456789999999999998753
No 344
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=30.85 E-value=36 Score=29.49 Aligned_cols=22 Identities=23% Similarity=0.176 Sum_probs=18.7
Q ss_pred CCCCCcEEEEcccHHHHHhhhc
Q 046761 87 VSSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~e 108 (109)
.-.+++|.|||-|-.|...|..
T Consensus 137 ~l~gktvgIiG~G~IG~~vA~~ 158 (526)
T PRK13581 137 ELYGKTLGIIGLGRIGSEVAKR 158 (526)
T ss_pred ccCCCEEEEECCCHHHHHHHHH
Confidence 3478999999999999988764
No 345
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=30.47 E-value=35 Score=27.67 Aligned_cols=21 Identities=19% Similarity=0.150 Sum_probs=17.1
Q ss_pred CCCcEEEEcc-cHHHHHhhhcC
Q 046761 89 SDPCVGIIGG-GMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGg-GpAGLacA~eL 109 (109)
.++.|+|+|| |-.|.++|..|
T Consensus 209 ~g~~vlItGasggIG~~la~~l 230 (450)
T PRK08261 209 AGKVALVTGAARGIGAAIAEVL 230 (450)
T ss_pred CCCEEEEecCCCHHHHHHHHHH
Confidence 5788999998 88999888653
No 346
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=30.36 E-value=51 Score=26.00 Aligned_cols=20 Identities=10% Similarity=0.049 Sum_probs=17.0
Q ss_pred CCCCCcEEEEcc-cHHHHHhh
Q 046761 87 VSSDPCVGIIGG-GMARLALS 106 (109)
Q Consensus 87 ~~~~kkVAVIGg-GpAGLacA 106 (109)
+..+.+|+|.|+ |..|+.+.
T Consensus 156 ~~~g~~VlV~GaaG~vG~~ai 176 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVG 176 (348)
T ss_pred CCCCCEEEEecCccHHHHHHH
Confidence 566889999999 99998874
No 347
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=30.16 E-value=15 Score=32.70 Aligned_cols=20 Identities=20% Similarity=0.350 Sum_probs=14.4
Q ss_pred CCCCCcEEEEcccHHHHHhh
Q 046761 87 VSSDPCVGIIGGGMARLALS 106 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA 106 (109)
+.....|+|||+|.++-.|=
T Consensus 184 ~~~~~~V~ViG~GQSAAEi~ 203 (436)
T COG3486 184 LLQKRSVTVIGSGQSAAEIF 203 (436)
T ss_pred hhcCceEEEEcCCccHHHHH
Confidence 44445599999999875543
No 348
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=30.00 E-value=40 Score=27.16 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=18.8
Q ss_pred CCCCCcEEEEcccHHHHHhhhc
Q 046761 87 VSSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~e 108 (109)
.-.+++|.|||-|-.|...|-.
T Consensus 142 ~L~gktvGIiG~G~IG~~vA~~ 163 (311)
T PRK08410 142 EIKGKKWGIIGLGTIGKRVAKI 163 (311)
T ss_pred ccCCCEEEEECCCHHHHHHHHH
Confidence 4589999999999999988753
No 349
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=29.87 E-value=36 Score=28.04 Aligned_cols=22 Identities=32% Similarity=0.280 Sum_probs=18.3
Q ss_pred CCCCCcEEEEcccHHHHHhhhc
Q 046761 87 VSSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~e 108 (109)
.-.+|.|.|||-|-.|-..|..
T Consensus 139 el~gkTvGIiG~G~IG~~va~~ 160 (324)
T COG0111 139 ELAGKTVGIIGLGRIGRAVAKR 160 (324)
T ss_pred cccCCEEEEECCCHHHHHHHHH
Confidence 3459999999999999888753
No 350
>PLN02823 spermine synthase
Probab=29.60 E-value=41 Score=27.91 Aligned_cols=18 Identities=33% Similarity=0.398 Sum_probs=14.1
Q ss_pred CCCCCcEEEEcccHHHHH
Q 046761 87 VSSDPCVGIIGGGMARLA 104 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLa 104 (109)
.+..++|.|||+|--+++
T Consensus 101 ~~~pk~VLiiGgG~G~~~ 118 (336)
T PLN02823 101 HPNPKTVFIMGGGEGSTA 118 (336)
T ss_pred CCCCCEEEEECCCchHHH
Confidence 456789999999966654
No 351
>cd07368 PhnC_Bs_like PhnC is a Class III Extradiol ring-cleavage dioxygenase involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. This subfamily is composed of Burkholderia sp. PhnC and similar poteins. PhnC is one of nine protein products encoded by the phn locus. These proteins are involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. PhnC is a member of the class III extradiol dioxygenase family, a group os enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=29.34 E-value=33 Score=27.35 Aligned_cols=13 Identities=46% Similarity=0.631 Sum_probs=11.1
Q ss_pred CCCCcEEEEcccH
Q 046761 88 SSDPCVGIIGGGM 100 (109)
Q Consensus 88 ~~~kkVAVIGgGp 100 (109)
+.+++|+|||+|-
T Consensus 177 ~~d~rVliIaSG~ 189 (277)
T cd07368 177 QGDERVAIIGSGG 189 (277)
T ss_pred CCCCCEEEEEcCc
Confidence 5689999999983
No 352
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=29.29 E-value=55 Score=24.39 Aligned_cols=20 Identities=15% Similarity=0.003 Sum_probs=16.0
Q ss_pred CCCCcEEEEcc-cHHHHHhhh
Q 046761 88 SSDPCVGIIGG-GMARLALSL 107 (109)
Q Consensus 88 ~~~kkVAVIGg-GpAGLacA~ 107 (109)
..+.+|+|+|+ |..|++++.
T Consensus 145 ~~~~~vlI~g~~g~vg~~~~~ 165 (326)
T cd08289 145 PEQGPVLVTGATGGVGSLAVS 165 (326)
T ss_pred CCCCEEEEEcCCchHHHHHHH
Confidence 34679999999 999988753
No 353
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=29.24 E-value=37 Score=29.38 Aligned_cols=22 Identities=18% Similarity=0.151 Sum_probs=18.9
Q ss_pred CCCCCcEEEEcccHHHHHhhhc
Q 046761 87 VSSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~e 108 (109)
.-.+++|.|||-|-.|...|..
T Consensus 135 ~l~gktvgIiG~G~IG~~vA~~ 156 (525)
T TIGR01327 135 ELYGKTLGVIGLGRIGSIVAKR 156 (525)
T ss_pred ccCCCEEEEECCCHHHHHHHHH
Confidence 4578999999999999988854
No 354
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.20 E-value=29 Score=28.56 Aligned_cols=21 Identities=10% Similarity=0.151 Sum_probs=17.3
Q ss_pred CCCCcEEEEcccHH-HHHhhhc
Q 046761 88 SSDPCVGIIGGGMA-RLALSLV 108 (109)
Q Consensus 88 ~~~kkVAVIGgGpA-GLacA~e 108 (109)
-.+++|+|||.|.. |.-+|.-
T Consensus 156 l~Gk~vvViGrs~iVGkPla~l 177 (285)
T PRK14189 156 LRGAHAVVIGRSNIVGKPMAML 177 (285)
T ss_pred CCCCEEEEECCCCccHHHHHHH
Confidence 48999999999887 8877753
No 355
>PRK06436 glycerate dehydrogenase; Provisional
Probab=29.04 E-value=39 Score=27.43 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=18.8
Q ss_pred CCCCCCcEEEEcccHHHHHhhh
Q 046761 86 PVSSDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 86 ~~~~~kkVAVIGgGpAGLacA~ 107 (109)
..-.+++|.|||-|-.|...|-
T Consensus 118 ~~L~gktvgIiG~G~IG~~vA~ 139 (303)
T PRK06436 118 KLLYNKSLGILGYGGIGRRVAL 139 (303)
T ss_pred CCCCCCEEEEECcCHHHHHHHH
Confidence 3567899999999999988774
No 356
>PLN02735 carbamoyl-phosphate synthase
Probab=28.95 E-value=34 Score=32.66 Aligned_cols=24 Identities=13% Similarity=0.036 Sum_probs=15.4
Q ss_pred ccccccCCCCCC-CCcEEEEcccHH
Q 046761 78 QEQVTFTTPVSS-DPCVGIIGGGMA 101 (109)
Q Consensus 78 q~qv~f~~~~~~-~kkVAVIGgGpA 101 (109)
.|.....++..+ -+||.|||+|+.
T Consensus 10 ~~~~~~~~~~~~~~kkVLiiGsG~~ 34 (1102)
T PLN02735 10 AWSAATKAGKRTDLKKIMILGAGPI 34 (1102)
T ss_pred cccccccCCcccCCCEEEEECCCcc
Confidence 344433344333 479999999995
No 357
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=28.93 E-value=39 Score=28.44 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=18.7
Q ss_pred CCCCCcEEEEcccHHHHHhhhc
Q 046761 87 VSSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~e 108 (109)
.-.+++|.|||-|-.|...|-.
T Consensus 148 ~L~gktvGIiG~G~IG~~vA~~ 169 (409)
T PRK11790 148 EVRGKTLGIVGYGHIGTQLSVL 169 (409)
T ss_pred cCCCCEEEEECCCHHHHHHHHH
Confidence 4578999999999999988753
No 358
>cd07373 2A5CPDO_A The alpha subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO) catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the alpha subunit, which does not contain a potential metal binding site and may not possess catalytic activity.
Probab=28.87 E-value=31 Score=27.26 Aligned_cols=12 Identities=25% Similarity=0.448 Sum_probs=9.9
Q ss_pred CCCcEEEEcccH
Q 046761 89 SDPCVGIIGGGM 100 (109)
Q Consensus 89 ~~kkVAVIGgGp 100 (109)
.+++|+|||+|-
T Consensus 165 ~~~rV~iIgSG~ 176 (271)
T cd07373 165 QNKRVAVVGVGG 176 (271)
T ss_pred cCCeEEEEEecc
Confidence 458999999984
No 359
>cd07359 PCA_45_Doxase_B_like Subunit B of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and simlar enzymes. This subfamily of class III extradiol dioxygenases consists of a number of proteins with known enzymatic activities: Protocatechuate (PCA) 4,5-dioxygenase (LigAB), 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), 3-O-Methylgallate Dioxygenase, 2-aminophenol 1,6-dioxygenase, as well as proteins without any known enzymatic activity. These proteins play essential roles in the degradation of aromatic compounds by catalyzing the incorporation of both atoms of molecular oxygen into their preferred substrates. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model repres
Probab=28.79 E-value=35 Score=26.45 Aligned_cols=12 Identities=33% Similarity=0.529 Sum_probs=10.2
Q ss_pred CCCcEEEEcccH
Q 046761 89 SDPCVGIIGGGM 100 (109)
Q Consensus 89 ~~kkVAVIGgGp 100 (109)
.+++|+|||+|-
T Consensus 172 ~d~rV~iIaSGd 183 (271)
T cd07359 172 GDLRVAVLGTGG 183 (271)
T ss_pred CCCcEEEEecCc
Confidence 488999999984
No 360
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.72 E-value=27 Score=28.80 Aligned_cols=22 Identities=14% Similarity=0.216 Sum_probs=18.2
Q ss_pred CCCCcEEEEcc-cHHHHHhhhcC
Q 046761 88 SSDPCVGIIGG-GMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGg-GpAGLacA~eL 109 (109)
-.+|+|+|||- |..|.-.|..|
T Consensus 156 l~Gk~v~vIG~S~ivG~Pla~lL 178 (284)
T PRK14179 156 LEGKHAVVIGRSNIVGKPMAQLL 178 (284)
T ss_pred CCCCEEEEECCCCcCcHHHHHHH
Confidence 47899999999 99998777543
No 361
>cd07371 2A5CPDO_AB The alpha and beta subunits of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. This subfamily contains both alpha and beta subunits of 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, an intermediate during p-chloronitrobenzene degradation. 2A5CPDO is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. Alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication.
Probab=28.59 E-value=30 Score=27.26 Aligned_cols=11 Identities=27% Similarity=0.522 Sum_probs=9.5
Q ss_pred CCcEEEEcccH
Q 046761 90 DPCVGIIGGGM 100 (109)
Q Consensus 90 ~kkVAVIGgGp 100 (109)
+++|+|||+|-
T Consensus 163 ~~rv~iIgSG~ 173 (268)
T cd07371 163 GKRVAVLGSGG 173 (268)
T ss_pred CCcEEEEEecC
Confidence 58999999984
No 362
>PLN02477 glutamate dehydrogenase
Probab=28.20 E-value=39 Score=29.05 Aligned_cols=21 Identities=14% Similarity=-0.046 Sum_probs=18.5
Q ss_pred CCCCcEEEEcccHHHHHhhhc
Q 046761 88 SSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~e 108 (109)
..+++|+|.|-|-.|..+|..
T Consensus 204 l~g~~VaIqGfGnVG~~~A~~ 224 (410)
T PLN02477 204 IAGQTFVIQGFGNVGSWAAQL 224 (410)
T ss_pred ccCCEEEEECCCHHHHHHHHH
Confidence 478999999999999998854
No 363
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=28.16 E-value=63 Score=24.81 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=17.3
Q ss_pred CCCCCcEEEEcccHHHHHhhh
Q 046761 87 VSSDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~ 107 (109)
+..+.+|+|.|+|..|+.++.
T Consensus 170 ~~~g~~vlI~g~g~vG~~a~q 190 (351)
T cd08233 170 FKPGDTALVLGAGPIGLLTIL 190 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHH
Confidence 456789999999999988753
No 364
>PRK14851 hypothetical protein; Provisional
Probab=27.89 E-value=37 Score=31.00 Aligned_cols=21 Identities=19% Similarity=0.148 Sum_probs=17.2
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
.+.+|+|||.|=.|-.+|..|
T Consensus 42 ~~~~VlIvG~GGlGs~va~~L 62 (679)
T PRK14851 42 AEAKVAIPGMGGVGGVHLITM 62 (679)
T ss_pred hcCeEEEECcCHHHHHHHHHH
Confidence 568999999998888877653
No 365
>PRK09897 hypothetical protein; Provisional
Probab=27.79 E-value=47 Score=29.26 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=15.6
Q ss_pred CCCCCCcEEEEcccHHHHHhh
Q 046761 86 PVSSDPCVGIIGGGMARLALS 106 (109)
Q Consensus 86 ~~~~~kkVAVIGgGpAGLacA 106 (109)
..+ +-+|+|||.|++.+=.+
T Consensus 188 ~i~-~~~V~I~GtGLt~iD~v 207 (534)
T PRK09897 188 KVD-ACNVGIMGTSLSGLDAA 207 (534)
T ss_pred CCC-CCeEEEECCCHHHHHHH
Confidence 344 68999999999877554
No 366
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=27.46 E-value=67 Score=24.40 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=17.4
Q ss_pred CCCCCCcEEEEcccHHHHHhh
Q 046761 86 PVSSDPCVGIIGGGMARLALS 106 (109)
Q Consensus 86 ~~~~~kkVAVIGgGpAGLacA 106 (109)
.+..+..|+|+|+|..|++++
T Consensus 165 ~~~~g~~vlI~g~g~vg~~~~ 185 (345)
T cd08287 165 GVRPGSTVVVVGDGAVGLCAV 185 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHH
Confidence 355678999999999999874
No 367
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=27.38 E-value=53 Score=23.64 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=17.0
Q ss_pred CCCCCcEEEEcc-cHHHHHhhh
Q 046761 87 VSSDPCVGIIGG-GMARLALSL 107 (109)
Q Consensus 87 ~~~~kkVAVIGg-GpAGLacA~ 107 (109)
+..+..|+|+|+ |..|++++.
T Consensus 137 ~~~~~~vli~g~~~~~g~~~~~ 158 (323)
T cd08241 137 LQPGETVLVLGAAGGVGLAAVQ 158 (323)
T ss_pred CCCCCEEEEEcCCchHHHHHHH
Confidence 456789999998 999988754
No 368
>PHA03265 envelope glycoprotein D; Provisional
Probab=27.31 E-value=1e+02 Score=27.37 Aligned_cols=19 Identities=32% Similarity=0.223 Sum_probs=14.2
Q ss_pred CCCCcEEEEcccHHHHHhh
Q 046761 88 SSDPCVGIIGGGMARLALS 106 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA 106 (109)
.....=+|||+|.|||..-
T Consensus 346 ~~~~~g~~ig~~i~glv~v 364 (402)
T PHA03265 346 NSTFVGISVGLGIAGLVLV 364 (402)
T ss_pred CCcccceEEccchhhhhhh
Confidence 3344668999999999753
No 369
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=27.17 E-value=60 Score=28.74 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=17.0
Q ss_pred CCCCCcEEEEcccHHHHHhhh
Q 046761 87 VSSDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~ 107 (109)
-...++|.|||||-.|...|.
T Consensus 19 ~~~~k~IgIIGgGqlg~mla~ 39 (577)
T PLN02948 19 GVSETVVGVLGGGQLGRMLCQ 39 (577)
T ss_pred CCCCCEEEEECCCHHHHHHHH
Confidence 367889999999998876543
No 370
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=27.02 E-value=70 Score=23.97 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=17.5
Q ss_pred CCCCCcEEEEcccHHHHHhhh
Q 046761 87 VSSDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~ 107 (109)
+..+.+|.|+|+|..|.+++.
T Consensus 153 ~~~g~~vlV~g~g~vg~~~~q 173 (319)
T cd08242 153 ITPGDKVAVLGDGKLGLLIAQ 173 (319)
T ss_pred CCCCCEEEEECCCHHHHHHHH
Confidence 566789999999999998753
No 371
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=26.92 E-value=43 Score=24.41 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=16.6
Q ss_pred CCCCCCcEEEEcc--cHHHHHhhh
Q 046761 86 PVSSDPCVGIIGG--GMARLALSL 107 (109)
Q Consensus 86 ~~~~~kkVAVIGg--GpAGLacA~ 107 (109)
....+++|.=+|+ |++||++|.
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~ 65 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAK 65 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHH
T ss_pred hhcCCceEEEECCccchhHHHHHh
Confidence 4567889999997 777888875
No 372
>cd07366 3MGA_Dioxygenase Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 3-O-Methylgallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate. 3-O-Methylgallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate (3MGA) between carbons 2 and 3. 3-O-Methylgallate Dioxygenase is a key enzyme in the syringate degradation pathway, in which the syringate is first converted to 3-O-Methylgallate by O-demethylase. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which uses a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=26.80 E-value=36 Score=28.36 Aligned_cols=13 Identities=38% Similarity=0.634 Sum_probs=10.9
Q ss_pred CCCCcEEEEcccH
Q 046761 88 SSDPCVGIIGGGM 100 (109)
Q Consensus 88 ~~~kkVAVIGgGp 100 (109)
+.+.+|+|||+|-
T Consensus 233 ~~d~rV~IIaSGg 245 (328)
T cd07366 233 PGDARVGVIASGG 245 (328)
T ss_pred CCCCCEEEEEeCc
Confidence 4589999999983
No 373
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=26.68 E-value=41 Score=27.48 Aligned_cols=20 Identities=20% Similarity=0.086 Sum_probs=16.6
Q ss_pred CCCcEEEEcccHHHHHhhhc
Q 046761 89 SDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~e 108 (109)
...+|.|||.|-.|..+|-.
T Consensus 18 ~~s~VLIvG~gGLG~EiaKn 37 (286)
T cd01491 18 QKSNVLISGLGGLGVEIAKN 37 (286)
T ss_pred hcCcEEEEcCCHHHHHHHHH
Confidence 45689999999999988754
No 374
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=26.57 E-value=67 Score=24.40 Aligned_cols=20 Identities=15% Similarity=0.159 Sum_probs=16.5
Q ss_pred CCCCCcEEEEc-ccHHHHHhh
Q 046761 87 VSSDPCVGIIG-GGMARLALS 106 (109)
Q Consensus 87 ~~~~kkVAVIG-gGpAGLacA 106 (109)
+..+.+|.|.| +|..|+.++
T Consensus 136 ~~~g~~VLI~ga~g~vG~~ai 156 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVG 156 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHH
Confidence 56778999999 499998875
No 375
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=26.36 E-value=75 Score=23.34 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=17.3
Q ss_pred CCCCCcEEEEcccHHHHHhhh
Q 046761 87 VSSDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~ 107 (109)
+..+.+|.|.|+|..|.+++.
T Consensus 127 ~~~~~~vlI~g~g~vg~~~~~ 147 (312)
T cd08269 127 IRAGKTVAVIGAGFIGLLFLQ 147 (312)
T ss_pred CCCCCEEEEECCCHHHHHHHH
Confidence 456789999999999988753
No 376
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=26.17 E-value=70 Score=25.10 Aligned_cols=20 Identities=20% Similarity=0.385 Sum_probs=16.8
Q ss_pred CCCCCcEEEEcccHHHHHhh
Q 046761 87 VSSDPCVGIIGGGMARLALS 106 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA 106 (109)
+..+.+|+|.|+|..|+.++
T Consensus 184 ~~~g~~vlI~g~g~vG~~~~ 203 (365)
T cd08278 184 PRPGSSIAVFGAGAVGLAAV 203 (365)
T ss_pred CCCCCEEEEECCCHHHHHHH
Confidence 45678999999999999874
No 377
>PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional
Probab=25.98 E-value=42 Score=28.73 Aligned_cols=19 Identities=16% Similarity=0.018 Sum_probs=15.3
Q ss_pred CCCcEEEEcccHHHHHhhh
Q 046761 89 SDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~ 107 (109)
..++|+|||+|-.|...+.
T Consensus 145 ~~rrvLIIGaG~~a~~l~~ 163 (476)
T PRK15204 145 WKKKTIILGSGQNARGAYS 163 (476)
T ss_pred CCCeEEEEECCHHHHHHHH
Confidence 3478999999999987654
No 378
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=25.95 E-value=47 Score=29.54 Aligned_cols=21 Identities=19% Similarity=0.148 Sum_probs=16.1
Q ss_pred CCCcEEEEcc-cHHHHHhhhcC
Q 046761 89 SDPCVGIIGG-GMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGg-GpAGLacA~eL 109 (109)
.++.|.|.|| |-.|.++|.+|
T Consensus 413 ~gkvvLVTGasggIG~aiA~~L 434 (676)
T TIGR02632 413 ARRVAFVTGGAGGIGRETARRL 434 (676)
T ss_pred CCCEEEEeCCCcHHHHHHHHHH
Confidence 4678888887 78888887653
No 379
>PLN02702 L-idonate 5-dehydrogenase
Probab=25.89 E-value=73 Score=24.75 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=16.4
Q ss_pred CCCCCcEEEEcccHHHHHhh
Q 046761 87 VSSDPCVGIIGGGMARLALS 106 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA 106 (109)
+..+.+|+|+|+|..|+++.
T Consensus 179 ~~~g~~vlI~g~g~vG~~~~ 198 (364)
T PLN02702 179 IGPETNVLVMGAGPIGLVTM 198 (364)
T ss_pred CCCCCEEEEECCCHHHHHHH
Confidence 45678999999999998763
No 380
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=25.85 E-value=78 Score=23.14 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=17.2
Q ss_pred CCCCCCcEEEEcccHHHHHhh
Q 046761 86 PVSSDPCVGIIGGGMARLALS 106 (109)
Q Consensus 86 ~~~~~kkVAVIGgGpAGLacA 106 (109)
.+..+.+|.|.|+|..|+++.
T Consensus 94 ~~~~g~~vlI~g~g~vg~~~i 114 (277)
T cd08255 94 EPRLGERVAVVGLGLVGLLAA 114 (277)
T ss_pred CCCCCCEEEEECCCHHHHHHH
Confidence 356778999999999998864
No 381
>PRK13365 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=25.84 E-value=40 Score=27.15 Aligned_cols=13 Identities=31% Similarity=0.404 Sum_probs=10.8
Q ss_pred CCCCcEEEEcccH
Q 046761 88 SSDPCVGIIGGGM 100 (109)
Q Consensus 88 ~~~kkVAVIGgGp 100 (109)
+.|.+|+|||+|-
T Consensus 178 ~~d~rV~iIaSG~ 190 (279)
T PRK13365 178 PEDLRVVVVGTGG 190 (279)
T ss_pred CcCCCEEEEEeCc
Confidence 3588999999984
No 382
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=25.80 E-value=58 Score=25.29 Aligned_cols=19 Identities=26% Similarity=0.309 Sum_probs=14.7
Q ss_pred CCCCCcEEEEcccHHHHHh
Q 046761 87 VSSDPCVGIIGGGMARLAL 105 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLac 105 (109)
.+.+++|.+||+|-.+++.
T Consensus 70 ~~~p~~VL~iG~G~G~~~~ 88 (270)
T TIGR00417 70 HPNPKHVLVIGGGDGGVLR 88 (270)
T ss_pred CCCCCEEEEEcCCchHHHH
Confidence 3556799999999877654
No 383
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=25.59 E-value=60 Score=24.50 Aligned_cols=20 Identities=15% Similarity=0.031 Sum_probs=16.5
Q ss_pred CCCCCcEEEEcc-cHHHHHhh
Q 046761 87 VSSDPCVGIIGG-GMARLALS 106 (109)
Q Consensus 87 ~~~~kkVAVIGg-GpAGLacA 106 (109)
+..+.+|+|+|+ |..|++++
T Consensus 144 ~~~g~~vlI~g~~g~vg~~~~ 164 (341)
T cd08290 144 LQPGDWVIQNGANSAVGQAVI 164 (341)
T ss_pred cCCCCEEEEccchhHHHHHHH
Confidence 467889999987 89998864
No 384
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=25.55 E-value=61 Score=24.34 Aligned_cols=20 Identities=15% Similarity=0.057 Sum_probs=16.6
Q ss_pred CCCCCcEEEEcccHHHHHhh
Q 046761 87 VSSDPCVGIIGGGMARLALS 106 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA 106 (109)
+..+.+|.|+|+|..|++++
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~ 179 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAV 179 (330)
T ss_pred CCCCCEEEEECCCHHHHHHH
Confidence 56778999999999998754
No 385
>PF00380 Ribosomal_S9: Ribosomal protein S9/S16; InterPro: IPR000754 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S9 is one of the proteins from the small ribosomal subunit. It belongs to the S9P family of ribosomal proteins which, on the basis of sequence similarities [, ], groups bacterial; algal chloroplast; cyanelle and archaeal S9 proteins; and mammalian; plant; and yeast mitochondrial ribosomal S9 proteins. These proteins adopt a beta-alpha-beta fold similar to that found in numerous RNA/DNA-binding proteins, as well as in kinases from the GHMP kinase family [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V46_I 3T1H_I 3MR8_I 3F1G_I 3D5C_I 3D5A_I 2WDG_I 3MS0_I 2WDM_I 2J02_I ....
Probab=25.42 E-value=45 Score=24.28 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=15.1
Q ss_pred CCcEEEEcccHHHHHhhhc
Q 046761 90 DPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 90 ~kkVAVIGgGpAGLacA~e 108 (109)
|-.|-|-|||+.|.+-|..
T Consensus 53 di~~~V~GGG~~gQa~Air 71 (121)
T PF00380_consen 53 DIFANVKGGGISGQAGAIR 71 (121)
T ss_dssp EEEEEEESSSHHHHHHHHH
T ss_pred eEEEEEecCcEeeehHHHH
Confidence 3466778999999998864
No 386
>PLN02206 UDP-glucuronate decarboxylase
Probab=25.29 E-value=50 Score=27.80 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=17.4
Q ss_pred CCCCcEEEEcc-cHHHHHhhhcC
Q 046761 88 SSDPCVGIIGG-GMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGg-GpAGLacA~eL 109 (109)
..+++|.|.|| |..|-..+.+|
T Consensus 117 ~~~~kILVTGatGfIGs~Lv~~L 139 (442)
T PLN02206 117 RKGLRVVVTGGAGFVGSHLVDRL 139 (442)
T ss_pred cCCCEEEEECcccHHHHHHHHHH
Confidence 46689999997 99998776554
No 387
>cd07364 PCA_45_Dioxygenase_B Subunit B of the Class III extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of protocatechuate. Protocatechuate 4,5-dioxygenase (LigAB) catalyzes the oxidization and subsequent ring-opening of protocatechuate (or 3,4-dihydroxybenzoic acid, PCA), an intermediate in the breakdown of lignin and other compounds. Protocatechuate 4,5-dioxygenase is an aromatic ring opening dioxygenase belonging to the class III extradiol enzyme family, a group of enyzmes that cleaves aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon using a non-heme Fe(II). LigAB is composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. The B subunit (LigB) is the catalytic subunit of LigAB.
Probab=25.16 E-value=43 Score=26.98 Aligned_cols=13 Identities=38% Similarity=0.386 Sum_probs=10.9
Q ss_pred CCCCcEEEEcccH
Q 046761 88 SSDPCVGIIGGGM 100 (109)
Q Consensus 88 ~~~kkVAVIGgGp 100 (109)
+.+.+|+|||+|-
T Consensus 178 ~rd~rV~iIaSG~ 190 (277)
T cd07364 178 DEDLKVAIWGTGG 190 (277)
T ss_pred CcCCCEEEEecCc
Confidence 4688999999994
No 388
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=25.08 E-value=57 Score=25.19 Aligned_cols=20 Identities=20% Similarity=0.155 Sum_probs=16.8
Q ss_pred CCCCcEEEEcccHHHHHhhh
Q 046761 88 SSDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~ 107 (109)
..+.+|.|.|+|..|++++.
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~ 195 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVA 195 (361)
T ss_pred CCCCEEEEECCCHHHHHHHH
Confidence 36789999999999998754
No 389
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=24.82 E-value=76 Score=24.32 Aligned_cols=20 Identities=10% Similarity=0.043 Sum_probs=16.8
Q ss_pred CCCCCcEEEEcc-cHHHHHhh
Q 046761 87 VSSDPCVGIIGG-GMARLALS 106 (109)
Q Consensus 87 ~~~~kkVAVIGg-GpAGLacA 106 (109)
+..+.+|.|.|+ |..|+.++
T Consensus 149 ~~~g~~VlI~Ga~G~vG~~ai 169 (338)
T cd08295 149 PKKGETVFVSAASGAVGQLVG 169 (338)
T ss_pred CCCCCEEEEecCccHHHHHHH
Confidence 567889999998 99998874
No 390
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=24.74 E-value=57 Score=26.95 Aligned_cols=24 Identities=25% Similarity=0.142 Sum_probs=20.5
Q ss_pred CCCCCCCcEEEEcccHHHHHhhhc
Q 046761 85 TPVSSDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 85 ~~~~~~kkVAVIGgGpAGLacA~e 108 (109)
.....+|+|.|||-|=.|.+.|..
T Consensus 141 ~~~l~gktvGIiG~GrIG~avA~r 164 (324)
T COG1052 141 GFDLRGKTLGIIGLGRIGQAVARR 164 (324)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHH
Confidence 346789999999999999998864
No 391
>cd07949 PCA_45_Doxase_B_like_1 The B subunit of unknown Class III extradiol dioxygenases with similarity to Protocatechuate 4,5-dioxygenase. This subfamily is composed of proteins of unknown function with similarity to the B subunit of Protocatechuate 4,5-dioxygenase (LigAB). LigAB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Dioxygenases play key roles in the degradation of aromatic compounds. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=24.62 E-value=43 Score=26.92 Aligned_cols=13 Identities=31% Similarity=0.396 Sum_probs=10.7
Q ss_pred CCCCcEEEEcccH
Q 046761 88 SSDPCVGIIGGGM 100 (109)
Q Consensus 88 ~~~kkVAVIGgGp 100 (109)
+.+++|+|||+|-
T Consensus 177 ~~d~rv~iiaSG~ 189 (276)
T cd07949 177 PEDLRVVVLGTGG 189 (276)
T ss_pred CcCCCEEEEEeCc
Confidence 4578999999984
No 392
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=24.56 E-value=82 Score=22.56 Aligned_cols=20 Identities=25% Similarity=0.238 Sum_probs=16.2
Q ss_pred CCCCCcEEEEc-ccHHHHHhh
Q 046761 87 VSSDPCVGIIG-GGMARLALS 106 (109)
Q Consensus 87 ~~~~kkVAVIG-gGpAGLacA 106 (109)
+..+.+|.|+| .|..|.+++
T Consensus 134 ~~~g~~vlI~g~~g~~g~~~~ 154 (320)
T cd05286 134 VKPGDTVLVHAAAGGVGLLLT 154 (320)
T ss_pred CCCCCEEEEEcCCchHHHHHH
Confidence 55678999999 599998764
No 393
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=24.44 E-value=83 Score=22.95 Aligned_cols=21 Identities=24% Similarity=0.061 Sum_probs=17.2
Q ss_pred CCCCCcEEEEcc-cHHHHHhhh
Q 046761 87 VSSDPCVGIIGG-GMARLALSL 107 (109)
Q Consensus 87 ~~~~kkVAVIGg-GpAGLacA~ 107 (109)
+..+.+|+|.|+ |..|++++.
T Consensus 141 ~~~g~~vli~g~~g~~g~~~~~ 162 (319)
T cd08267 141 VKPGQRVLINGASGGVGTFAVQ 162 (319)
T ss_pred CCCCCEEEEEcCCcHHHHHHHH
Confidence 567889999997 899988753
No 394
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=24.39 E-value=64 Score=24.39 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=17.1
Q ss_pred CCCCCcEEEEcccHHHHHhhh
Q 046761 87 VSSDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~ 107 (109)
...+.+|+|.|+|..|.+++.
T Consensus 165 ~~~~~~vlI~g~g~vg~~~~~ 185 (344)
T cd08284 165 VRPGDTVAVIGCGPVGLCAVL 185 (344)
T ss_pred CccCCEEEEECCcHHHHHHHH
Confidence 456789999999999988753
No 395
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=24.25 E-value=60 Score=27.56 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=14.0
Q ss_pred CCCCCcEEEEcccHHHHH
Q 046761 87 VSSDPCVGIIGGGMARLA 104 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLa 104 (109)
+..+.+|+|+|.|=.|..
T Consensus 164 ~~pG~~V~I~G~GGlGh~ 181 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHM 181 (339)
T ss_pred CCCCCEEEEECCcHHHHH
Confidence 667899999999944443
No 396
>PRK13364 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=23.75 E-value=45 Score=27.00 Aligned_cols=13 Identities=46% Similarity=0.524 Sum_probs=10.8
Q ss_pred CCCCcEEEEcccH
Q 046761 88 SSDPCVGIIGGGM 100 (109)
Q Consensus 88 ~~~kkVAVIGgGp 100 (109)
+.+++|+|||+|-
T Consensus 177 ~~d~rV~iIaSG~ 189 (278)
T PRK13364 177 PSDERVVVIGTGG 189 (278)
T ss_pred CCCCCEEEEEeCc
Confidence 4678999999983
No 397
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=23.34 E-value=57 Score=24.73 Aligned_cols=18 Identities=17% Similarity=0.182 Sum_probs=14.6
Q ss_pred CCCCCCcEEEEcccHHHHH
Q 046761 86 PVSSDPCVGIIGGGMARLA 104 (109)
Q Consensus 86 ~~~~~kkVAVIGgGpAGLa 104 (109)
.+..+.+|+.||+|. |+.
T Consensus 74 ~~~~g~~VLDiG~G~-G~~ 91 (272)
T PRK11873 74 ELKPGETVLDLGSGG-GFD 91 (272)
T ss_pred cCCCCCEEEEeCCCC-CHH
Confidence 356788999999999 753
No 398
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=23.14 E-value=1e+02 Score=21.39 Aligned_cols=21 Identities=29% Similarity=0.211 Sum_probs=15.7
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
.+|-|+-|+.|+.-|+.|..|
T Consensus 70 ~~k~iaaIC~g~~~L~~~gll 90 (147)
T PF01965_consen 70 AGKPIAAICHGPAVLAAAGLL 90 (147)
T ss_dssp TT-EEEEETTCHHHHHHTTTT
T ss_pred cCCeEEecCCCcchhhccCcc
Confidence 356699999999988877543
No 399
>PRK01581 speE spermidine synthase; Validated
Probab=23.06 E-value=73 Score=27.55 Aligned_cols=16 Identities=38% Similarity=0.407 Sum_probs=13.3
Q ss_pred CCCCCcEEEEcccHHH
Q 046761 87 VSSDPCVGIIGGGMAR 102 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAG 102 (109)
.+..++|.|||||--+
T Consensus 148 h~~PkrVLIIGgGdG~ 163 (374)
T PRK01581 148 VIDPKRVLILGGGDGL 163 (374)
T ss_pred CCCCCEEEEECCCHHH
Confidence 5778899999999555
No 400
>cd07950 Gallate_Doxase_N The N-terminal domain of the Class III extradiol dioxygenase, Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. In this subfamily, the subunits A and B are fused to make a single polypeptide chain. The dimer interface for this subfamily may resemble the tetramer interface of classical LigAB en
Probab=22.83 E-value=50 Score=26.54 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=11.2
Q ss_pred CCCCCcEEEEcccH
Q 046761 87 VSSDPCVGIIGGGM 100 (109)
Q Consensus 87 ~~~~kkVAVIGgGp 100 (109)
.+.+.+|+|||+|-
T Consensus 177 ~~~d~rv~iIaSG~ 190 (277)
T cd07950 177 YPEDLKVAVVGTGG 190 (277)
T ss_pred cCcCCCEEEEEcCc
Confidence 34688999999984
No 401
>COG1634 Uncharacterized Rossmann fold enzyme [General function prediction only]
Probab=22.72 E-value=47 Score=27.30 Aligned_cols=16 Identities=19% Similarity=0.349 Sum_probs=13.1
Q ss_pred CCCCCcEEEEcccHHH
Q 046761 87 VSSDPCVGIIGGGMAR 102 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAG 102 (109)
+..+..|+|||+||..
T Consensus 49 ~i~g~~v~vvG~gP~l 64 (232)
T COG1634 49 LIEGREVAVVGAGPSL 64 (232)
T ss_pred hccCCEEEEECCCCcH
Confidence 4558999999999854
No 402
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=22.59 E-value=91 Score=24.74 Aligned_cols=21 Identities=24% Similarity=0.224 Sum_probs=17.4
Q ss_pred CCCCCCcEEEEcccHHHHHhh
Q 046761 86 PVSSDPCVGIIGGGMARLALS 106 (109)
Q Consensus 86 ~~~~~kkVAVIGgGpAGLacA 106 (109)
.+..+.+|+|.|+|..|++++
T Consensus 200 ~~~~g~~VlV~g~g~vG~~ai 220 (384)
T cd08265 200 GFRPGAYVVVYGAGPIGLAAI 220 (384)
T ss_pred CCCCCCEEEEECCCHHHHHHH
Confidence 355678999999999999875
No 403
>PRK06701 short chain dehydrogenase; Provisional
Probab=22.53 E-value=63 Score=24.73 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=15.5
Q ss_pred CCCcEEEEcc-cHHHHHhhhcC
Q 046761 89 SDPCVGIIGG-GMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGg-GpAGLacA~eL 109 (109)
++++|.|+|| |-.|.++|.+|
T Consensus 45 ~~k~iLItGasggIG~~la~~l 66 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLF 66 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHH
Confidence 4678999985 67788887643
No 404
>PTZ00188 adrenodoxin reductase; Provisional
Probab=22.51 E-value=62 Score=28.99 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=17.7
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
...+|+|||.|-.-|=||-.|
T Consensus 196 ~~~~vvVIG~GNVAlDvARiL 216 (506)
T PTZ00188 196 NFTTSIIIGNGNVSLDIARIL 216 (506)
T ss_pred CCCcEEEECCCchHHHHHHHH
Confidence 567999999999999888643
No 405
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=22.49 E-value=79 Score=25.84 Aligned_cols=17 Identities=35% Similarity=0.177 Sum_probs=14.8
Q ss_pred CcEEEEcccHHHHHhhh
Q 046761 91 PCVGIIGGGMARLALSL 107 (109)
Q Consensus 91 kkVAVIGgGpAGLacA~ 107 (109)
-+|+|||.|--|-|.+.
T Consensus 85 tnviiVG~GnlG~All~ 101 (211)
T COG2344 85 TNVIIVGVGNLGRALLN 101 (211)
T ss_pred eeEEEEccChHHHHHhc
Confidence 46999999999998875
No 406
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=22.40 E-value=94 Score=23.65 Aligned_cols=20 Identities=35% Similarity=0.456 Sum_probs=16.9
Q ss_pred CCCCCcEEEEcccHHHHHhh
Q 046761 87 VSSDPCVGIIGGGMARLALS 106 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA 106 (109)
+..+.+|.|.|+|..|.+++
T Consensus 164 ~~~g~~vlI~g~g~~g~~~~ 183 (345)
T cd08286 164 VKPGDTVAIVGAGPVGLAAL 183 (345)
T ss_pred CCCCCEEEEECCCHHHHHHH
Confidence 56788999999999998764
No 407
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=22.39 E-value=86 Score=23.32 Aligned_cols=18 Identities=22% Similarity=0.132 Sum_probs=15.2
Q ss_pred CCCcEEEEcc-cHHHHHhh
Q 046761 89 SDPCVGIIGG-GMARLALS 106 (109)
Q Consensus 89 ~~kkVAVIGg-GpAGLacA 106 (109)
.+.+|+|+|+ |..|.+++
T Consensus 146 ~~~~vlI~ga~g~vg~~~~ 164 (324)
T cd08288 146 GDGPVLVTGAAGGVGSVAV 164 (324)
T ss_pred CCCEEEEECCCcHHHHHHH
Confidence 4678999998 99998875
No 408
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=22.34 E-value=80 Score=23.96 Aligned_cols=16 Identities=13% Similarity=0.154 Sum_probs=14.0
Q ss_pred CcEEEEcc-cHHHHHhh
Q 046761 91 PCVGIIGG-GMARLALS 106 (109)
Q Consensus 91 kkVAVIGg-GpAGLacA 106 (109)
.+|.|.|+ |..|+++.
T Consensus 156 ~~VlI~ga~g~vG~~ai 172 (345)
T cd08293 156 QTMVVSGAAGACGSLAG 172 (345)
T ss_pred CEEEEECCCcHHHHHHH
Confidence 78999998 99998874
No 409
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=22.19 E-value=63 Score=27.70 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=12.6
Q ss_pred CCCCCCCccchhhhhh
Q 046761 59 RRRSSYGSSRRSALKK 74 (109)
Q Consensus 59 rr~~~~~~sr~sitdk 74 (109)
++-+-|||.||++.+-
T Consensus 71 ~~~~~~~~~rrsvrEg 86 (370)
T PLN03094 71 KPLSDFGFGKRSVWEG 86 (370)
T ss_pred cchhhcCCcchhHHHH
Confidence 4567899999998654
No 410
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=22.16 E-value=58 Score=25.70 Aligned_cols=23 Identities=22% Similarity=0.063 Sum_probs=19.6
Q ss_pred CCCCCcEEEEcccHHHHHhhhcC
Q 046761 87 VSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~eL 109 (109)
...+++|+|-|-|-.|..+|..|
T Consensus 29 ~l~g~~v~IqGfG~VG~~~a~~l 51 (244)
T PF00208_consen 29 SLEGKRVAIQGFGNVGSHAARFL 51 (244)
T ss_dssp SSTTCEEEEEESSHHHHHHHHHH
T ss_pred CcCCCEEEEECCCHHHHHHHHHH
Confidence 35789999999999999998653
No 411
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=22.02 E-value=59 Score=26.80 Aligned_cols=20 Identities=30% Similarity=0.228 Sum_probs=15.7
Q ss_pred CCCcEEEEcccHHHHHhhhc
Q 046761 89 SDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~e 108 (109)
..++|+|||+|-+|-..+.+
T Consensus 124 ~~~rvLIvGag~~a~~l~~~ 143 (445)
T TIGR03025 124 NLRRVLIVGTGEAARELAAA 143 (445)
T ss_pred CCCcEEEEECCHHHHHHHHH
Confidence 45789999999999766543
No 412
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=22.01 E-value=80 Score=23.68 Aligned_cols=20 Identities=25% Similarity=0.394 Sum_probs=16.1
Q ss_pred CCCCCcEEEEcccHHHHHhh
Q 046761 87 VSSDPCVGIIGGGMARLALS 106 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA 106 (109)
+..+.+|+|+|+|..|.+++
T Consensus 157 ~~~g~~vlI~g~g~vg~~~~ 176 (334)
T cd08234 157 IKPGDSVLVFGAGPIGLLLA 176 (334)
T ss_pred CCCCCEEEEECCCHHHHHHH
Confidence 45667999999998888865
No 413
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=22.00 E-value=56 Score=30.81 Aligned_cols=14 Identities=21% Similarity=0.356 Sum_probs=11.9
Q ss_pred CCCCcEEEEcccHH
Q 046761 88 SSDPCVGIIGGGMA 101 (109)
Q Consensus 88 ~~~kkVAVIGgGpA 101 (109)
...++|.|+|+|+-
T Consensus 552 ~~~~kvlvlG~G~~ 565 (1050)
T TIGR01369 552 TDKKKVLVLGSGPN 565 (1050)
T ss_pred CCCceEEEecCccc
Confidence 45679999999986
No 414
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=21.98 E-value=94 Score=24.49 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=17.2
Q ss_pred CCCCCcEEEEcccHHHHHhhh
Q 046761 87 VSSDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA~ 107 (109)
...+..|+|.|.|..|++++.
T Consensus 174 ~~~g~~vlI~g~g~vg~~~~~ 194 (375)
T cd08282 174 VQPGDTVAVFGAGPVGLMAAY 194 (375)
T ss_pred CCCCCEEEEECCCHHHHHHHH
Confidence 456789999999999998753
No 415
>PF11341 DUF3143: Protein of unknown function (DUF3143); InterPro: IPR021489 This family of proteins has no known function.
Probab=21.93 E-value=44 Score=22.48 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=15.3
Q ss_pred CCCCCCCCCccchhhhhhhhh
Q 046761 57 RNRRRSSYGSSRRSALKKTFA 77 (109)
Q Consensus 57 ~~rr~~~~~~sr~sitdk~F~ 77 (109)
...|.=+|+.||++|-.-.|.
T Consensus 42 ~~~rsF~YsLSR~DvE~Ai~~ 62 (63)
T PF11341_consen 42 DIQRSFPYSLSREDVEAAIFS 62 (63)
T ss_pred ccEEeccCcCCHHHHHHHHhc
Confidence 345667899999999655553
No 416
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=21.85 E-value=52 Score=25.13 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=16.4
Q ss_pred CCCcEEEEcccHHHHHhhhcC
Q 046761 89 SDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~eL 109 (109)
..-+|.|||.|.-|-..|.+|
T Consensus 29 ~~s~vlvvG~GglG~~~~~~l 49 (254)
T COG0476 29 KDSRVLVVGAGGLGSPAAKYL 49 (254)
T ss_pred hhCCEEEEecChhHHHHHHHH
Confidence 345799999999988777653
No 417
>PLN02253 xanthoxin dehydrogenase
Probab=21.51 E-value=68 Score=23.71 Aligned_cols=20 Identities=10% Similarity=0.037 Sum_probs=14.1
Q ss_pred CCCcEEEEcc-cHHHHHhhhc
Q 046761 89 SDPCVGIIGG-GMARLALSLV 108 (109)
Q Consensus 89 ~~kkVAVIGg-GpAGLacA~e 108 (109)
.+++|+|.|| |-.|.++|.+
T Consensus 17 ~~k~~lItGas~gIG~~la~~ 37 (280)
T PLN02253 17 LGKVALVTGGATGIGESIVRL 37 (280)
T ss_pred CCCEEEEECCCchHHHHHHHH
Confidence 4677888886 5667777654
No 418
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=21.47 E-value=1e+02 Score=23.15 Aligned_cols=20 Identities=15% Similarity=0.200 Sum_probs=16.7
Q ss_pred CCCCCcEEEEcccHHHHHhh
Q 046761 87 VSSDPCVGIIGGGMARLALS 106 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGLacA 106 (109)
+..+.+|+|.|+|..|++++
T Consensus 165 ~~~~~~vlV~g~g~vg~~~~ 184 (329)
T cd08298 165 LKPGQRLGLYGFGASAHLAL 184 (329)
T ss_pred CCCCCEEEEECCcHHHHHHH
Confidence 45678999999999998865
No 419
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=21.42 E-value=78 Score=25.25 Aligned_cols=21 Identities=24% Similarity=0.083 Sum_probs=17.0
Q ss_pred CCCCCcEEEEcc-cHHHHHhhh
Q 046761 87 VSSDPCVGIIGG-GMARLALSL 107 (109)
Q Consensus 87 ~~~~kkVAVIGg-GpAGLacA~ 107 (109)
...+.+|+|.|+ |..|++++.
T Consensus 187 ~~~g~~vlV~Ga~g~vG~~ai~ 208 (398)
T TIGR01751 187 VKPGDNVLIWGAAGGLGSYATQ 208 (398)
T ss_pred CCCCCEEEEEcCCcHHHHHHHH
Confidence 456789999998 999988753
No 420
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=21.41 E-value=95 Score=23.77 Aligned_cols=19 Identities=37% Similarity=0.301 Sum_probs=16.2
Q ss_pred CCCcEEEEcccHHHHHhhh
Q 046761 89 SDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~ 107 (109)
.+..|+|.|+|..|++++.
T Consensus 175 ~~~~vlI~g~g~vg~~~~~ 193 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALA 193 (350)
T ss_pred CCCEEEEECCcHHHHHHHH
Confidence 5788999999999998753
No 421
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=21.22 E-value=64 Score=26.64 Aligned_cols=20 Identities=25% Similarity=0.117 Sum_probs=15.6
Q ss_pred CCCcEEEEcccHHHHHhhhc
Q 046761 89 SDPCVGIIGGGMARLALSLV 108 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~e 108 (109)
..++|+|||+|-+|-..+.+
T Consensus 127 ~~~rvLIiGag~~~~~l~~~ 146 (451)
T TIGR03023 127 NLRRVLIVGAGELGRRLAER 146 (451)
T ss_pred CCCcEEEEeCCHHHHHHHHH
Confidence 35789999999999766543
No 422
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=21.16 E-value=70 Score=29.04 Aligned_cols=23 Identities=13% Similarity=0.069 Sum_probs=18.2
Q ss_pred CCCCCcEEEEcc-cHHHHHhhhcC
Q 046761 87 VSSDPCVGIIGG-GMARLALSLVL 109 (109)
Q Consensus 87 ~~~~kkVAVIGg-GpAGLacA~eL 109 (109)
...++.|+|.|| |-.|..++.+|
T Consensus 77 ~~~gKvVLVTGATGgIG~aLAr~L 100 (576)
T PLN03209 77 TKDEDLAFVAGATGKVGSRTVREL 100 (576)
T ss_pred cCCCCEEEEECCCCHHHHHHHHHH
Confidence 457788999997 88999887654
No 423
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=21.14 E-value=26 Score=31.40 Aligned_cols=22 Identities=14% Similarity=0.318 Sum_probs=0.0
Q ss_pred CCCCcEEEEcccHHHHHhhhcC
Q 046761 88 SSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 88 ~~~kkVAVIGgGpAGLacA~eL 109 (109)
..++||+|||||-.++..|..+
T Consensus 187 e~Pkr~vvvGaGYIavE~Agi~ 208 (478)
T KOG0405|consen 187 EQPKRVVVVGAGYIAVEFAGIF 208 (478)
T ss_pred hcCceEEEEccceEEEEhhhHH
No 424
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=20.97 E-value=84 Score=22.65 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=16.8
Q ss_pred CCCCCcEEEEcc-cHHHHHhhh
Q 046761 87 VSSDPCVGIIGG-GMARLALSL 107 (109)
Q Consensus 87 ~~~~kkVAVIGg-GpAGLacA~ 107 (109)
+..+.+|+|.|+ |..|++++.
T Consensus 142 ~~~g~~vlI~g~~~~~g~~~~~ 163 (325)
T cd08253 142 AKAGETVLVHGGSGAVGHAAVQ 163 (325)
T ss_pred CCCCCEEEEEcCCchHHHHHHH
Confidence 556889999995 888888754
No 425
>cd07372 2A5CPDO_B The beta subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active 2A5CPDO enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the beta subunit, which contains a putative metal binding site with two conserved histidines; these residues are equivalent to two out of three Fe(II) bindin
Probab=20.93 E-value=52 Score=26.79 Aligned_cols=11 Identities=0% Similarity=0.069 Sum_probs=9.6
Q ss_pred CCCcEEEEccc
Q 046761 89 SDPCVGIIGGG 99 (109)
Q Consensus 89 ~~kkVAVIGgG 99 (109)
.++||+|||+|
T Consensus 179 ~~~RV~vIaSG 189 (294)
T cd07372 179 TGRRAVLLASN 189 (294)
T ss_pred cCCeEEEEEeC
Confidence 47899999998
No 426
>cd07369 PydA_Rs_like PydA is a Class III Extradiol ring-cleavage dioxygenase required for the degradation of 3-hydroxy-4-pyridone (HP). This subfamily is composed of Rhizobium sp. PydA and similar proteins. PydA is required for the degradation of 3-hydroxy-4-pyridone (HP), an intermediate in the Leucaena toxin mimosine degradation pathway. It is a member of the class III extradiol dioxygenase family, a group of enzymes that use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=20.78 E-value=57 Score=27.30 Aligned_cols=13 Identities=23% Similarity=0.284 Sum_probs=10.7
Q ss_pred CCCCcEEEEcccH
Q 046761 88 SSDPCVGIIGGGM 100 (109)
Q Consensus 88 ~~~kkVAVIGgGp 100 (109)
+.|++|+|||+|-
T Consensus 177 ~~d~rVaiIaSG~ 189 (329)
T cd07369 177 PDDLRVAFMATGG 189 (329)
T ss_pred CCCCCEEEEEeCc
Confidence 3579999999984
No 427
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=20.78 E-value=65 Score=26.62 Aligned_cols=19 Identities=26% Similarity=0.130 Sum_probs=15.0
Q ss_pred CCCcEEEEcccHHHHHhhh
Q 046761 89 SDPCVGIIGGGMARLALSL 107 (109)
Q Consensus 89 ~~kkVAVIGgGpAGLacA~ 107 (109)
..++|+|||+|-.|-..+.
T Consensus 124 ~~rrvlIiGag~~~~~l~~ 142 (456)
T TIGR03022 124 WGRPAVIIGAGQNAAILYR 142 (456)
T ss_pred CCceEEEEeCCHHHHHHHH
Confidence 3467999999999876654
No 428
>PRK13366 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=20.77 E-value=59 Score=26.50 Aligned_cols=13 Identities=38% Similarity=0.373 Sum_probs=10.8
Q ss_pred CCCCcEEEEcccH
Q 046761 88 SSDPCVGIIGGGM 100 (109)
Q Consensus 88 ~~~kkVAVIGgGp 100 (109)
+.+.+|+|||+|-
T Consensus 178 ~~d~rV~iIaSGg 190 (284)
T PRK13366 178 DEDLNVQIWGTGG 190 (284)
T ss_pred CcCCCEEEEecCc
Confidence 4578899999994
No 429
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=20.71 E-value=97 Score=24.45 Aligned_cols=20 Identities=25% Similarity=0.084 Sum_probs=16.5
Q ss_pred CCCCCcEEEEcc-cHHHHHhh
Q 046761 87 VSSDPCVGIIGG-GMARLALS 106 (109)
Q Consensus 87 ~~~~kkVAVIGg-GpAGLacA 106 (109)
+..+.+|+|.|+ |..|++++
T Consensus 191 ~~~g~~vlV~ga~g~iG~a~~ 211 (393)
T cd08246 191 VKPGDNVLIWGASGGLGSMAI 211 (393)
T ss_pred CCCCCEEEEECCCcHHHHHHH
Confidence 455779999997 99998875
No 430
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=20.46 E-value=89 Score=22.87 Aligned_cols=21 Identities=19% Similarity=0.098 Sum_probs=16.2
Q ss_pred CCCCCcEEEEccc-HHHHHhhh
Q 046761 87 VSSDPCVGIIGGG-MARLALSL 107 (109)
Q Consensus 87 ~~~~kkVAVIGgG-pAGLacA~ 107 (109)
+..+.+|+|+|++ ..|++++.
T Consensus 164 ~~~~~~vlI~g~~~~iG~~~~~ 185 (342)
T cd08266 164 LRPGETVLVHGAGSGVGSAAIQ 185 (342)
T ss_pred CCCCCEEEEECCCchHHHHHHH
Confidence 4567899999986 78887754
No 431
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=20.28 E-value=89 Score=22.63 Aligned_cols=21 Identities=19% Similarity=0.079 Sum_probs=16.3
Q ss_pred CCCCCcEEEEcc-cHHHHHhhh
Q 046761 87 VSSDPCVGIIGG-GMARLALSL 107 (109)
Q Consensus 87 ~~~~kkVAVIGg-GpAGLacA~ 107 (109)
...+.+|.|.|+ |..|++++.
T Consensus 142 ~~~~~~vli~g~~~~~g~~~~~ 163 (328)
T cd08268 142 LRPGDSVLITAASSSVGLAAIQ 163 (328)
T ss_pred CCCCCEEEEecCccHHHHHHHH
Confidence 456789999997 888888654
No 432
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=20.18 E-value=1e+02 Score=22.44 Aligned_cols=20 Identities=25% Similarity=0.247 Sum_probs=16.8
Q ss_pred CCCCCcEEEEcc-cHHHHHhh
Q 046761 87 VSSDPCVGIIGG-GMARLALS 106 (109)
Q Consensus 87 ~~~~kkVAVIGg-GpAGLacA 106 (109)
...+.+|+|.|+ |..|.+++
T Consensus 140 ~~~g~~vlV~ga~g~~g~~~~ 160 (320)
T cd08243 140 LQPGDTLLIRGGTSSVGLAAL 160 (320)
T ss_pred CCCCCEEEEEcCCChHHHHHH
Confidence 567789999997 99998874
No 433
>PLN02735 carbamoyl-phosphate synthase
Probab=20.10 E-value=66 Score=30.81 Aligned_cols=17 Identities=35% Similarity=0.552 Sum_probs=13.3
Q ss_pred CCCCCcEEEEcccHHHH
Q 046761 87 VSSDPCVGIIGGGMARL 103 (109)
Q Consensus 87 ~~~~kkVAVIGgGpAGL 103 (109)
....++|.|+|+|+-.+
T Consensus 571 ~~~~kkvlilG~G~~~i 587 (1102)
T PLN02735 571 PTNKKKVLILGGGPNRI 587 (1102)
T ss_pred cCCCceEEEeCcccccc
Confidence 45678999999998533
No 434
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=20.06 E-value=70 Score=26.93 Aligned_cols=17 Identities=12% Similarity=0.303 Sum_probs=13.7
Q ss_pred CCCcEEEEcc-cHHHHHh
Q 046761 89 SDPCVGIIGG-GMARLAL 105 (109)
Q Consensus 89 ~~kkVAVIGg-GpAGLac 105 (109)
..++|+|||+ |.+|...
T Consensus 37 ~~~kVaIvGATG~vG~eL 54 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEV 54 (381)
T ss_pred cccEEEEECCCChHHHHH
Confidence 4469999999 8998754
No 435
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=20.06 E-value=66 Score=28.64 Aligned_cols=41 Identities=20% Similarity=0.288 Sum_probs=32.3
Q ss_pred CCCccchhhhhhhhhccccccCCCCCCCCcEEEEcccHHHHHhhhcC
Q 046761 63 SYGSSRRSALKKTFAQEQVTFTTPVSSDPCVGIIGGGMARLALSLVL 109 (109)
Q Consensus 63 ~~~~sr~sitdk~F~q~qv~f~~~~~~~kkVAVIGgGpAGLacA~eL 109 (109)
+||+ +||.+|-....-. .+-.+|.|+|.|=|=.|.-||..|
T Consensus 188 rYGt-gqS~~DgI~RaTn-----~liaGK~vVV~GYG~vGrG~A~~~ 228 (420)
T COG0499 188 RYGT-GQSLLDGILRATN-----VLLAGKNVVVAGYGWVGRGIAMRL 228 (420)
T ss_pred cccc-chhHHHHHHhhhc-----eeecCceEEEecccccchHHHHHh
Confidence 4664 7888888776633 356899999999999999999754
Done!