Query 046764
Match_columns 1113
No_of_seqs 779 out of 4003
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 04:17:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046764.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046764hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 7.5E-61 1.6E-65 591.4 33.7 457 203-685 10-648 (889)
2 PLN03210 Resistant to P. syrin 100.0 3.3E-55 7.2E-60 571.8 42.1 662 236-1055 100-907 (1153)
3 PLN00113 leucine-rich repeat r 100.0 1.2E-28 2.7E-33 322.5 21.4 451 590-1090 116-596 (968)
4 PLN00113 leucine-rich repeat r 100.0 4.5E-28 9.8E-33 317.3 21.2 463 587-1099 88-582 (968)
5 PF00931 NB-ARC: NB-ARC domain 99.9 7.8E-26 1.7E-30 253.8 7.9 186 336-530 19-285 (287)
6 PLN03210 Resistant to P. syrin 99.9 6.2E-21 1.4E-25 250.2 26.5 329 586-1036 552-910 (1153)
7 KOG0444 Cytoskeletal regulator 99.8 9.1E-21 2E-25 211.5 -4.3 361 607-1083 5-380 (1255)
8 KOG4194 Membrane glycoprotein 99.8 1.6E-19 3.5E-24 201.2 4.2 350 611-1073 80-447 (873)
9 KOG0618 Serine/threonine phosp 99.8 1.6E-20 3.4E-25 220.3 -4.8 421 591-1099 44-487 (1081)
10 KOG0618 Serine/threonine phosp 99.7 9.7E-20 2.1E-24 213.8 -5.3 402 587-1077 63-488 (1081)
11 KOG4194 Membrane glycoprotein 99.7 1.6E-18 3.5E-23 193.3 3.7 371 612-1096 55-447 (873)
12 KOG0472 Leucine-rich repeat pr 99.7 1.6E-19 3.5E-24 193.4 -11.6 407 604-1076 63-539 (565)
13 KOG0444 Cytoskeletal regulator 99.7 7.5E-19 1.6E-23 196.4 -7.2 351 590-1058 5-379 (1255)
14 KOG0472 Leucine-rich repeat pr 99.5 1.9E-16 4.2E-21 170.0 -8.7 368 604-1059 109-544 (565)
15 PRK15387 E3 ubiquitin-protein 99.4 1.8E-12 3.8E-17 158.8 15.6 51 612-668 204-254 (788)
16 PRK15387 E3 ubiquitin-protein 99.3 1.9E-11 4.2E-16 149.8 14.8 233 790-1076 222-456 (788)
17 KOG4237 Extracellular matrix p 99.2 7.8E-13 1.7E-17 142.7 -5.3 77 604-680 86-164 (498)
18 PRK15370 E3 ubiquitin-protein 99.1 1.8E-10 4E-15 142.2 9.0 161 898-1083 242-405 (754)
19 PRK15370 E3 ubiquitin-protein 99.0 4E-10 8.6E-15 139.3 8.9 218 819-1076 199-426 (754)
20 KOG4658 Apoptotic ATPase [Sign 99.0 2.6E-10 5.6E-15 143.0 6.1 129 607-752 543-676 (889)
21 KOG0617 Ras suppressor protein 98.8 1.7E-10 3.7E-15 111.0 -3.4 154 582-755 23-184 (264)
22 cd00116 LRR_RI Leucine-rich re 98.6 1.1E-08 2.5E-13 116.5 3.0 64 606-669 20-94 (319)
23 KOG0617 Ras suppressor protein 98.6 1.1E-09 2.4E-14 105.5 -5.0 61 606-667 30-90 (264)
24 PRK15386 type III secretion pr 98.6 6.7E-08 1.5E-12 109.3 7.4 160 915-1102 48-214 (426)
25 cd00116 LRR_RI Leucine-rich re 98.5 4.4E-08 9.6E-13 111.6 1.5 64 605-668 47-120 (319)
26 PRK15386 type III secretion pr 98.4 1.5E-06 3.3E-11 98.5 10.5 137 918-1078 71-213 (426)
27 KOG4341 F-box protein containi 98.3 1.3E-08 2.8E-13 111.7 -8.8 131 918-1055 293-440 (483)
28 KOG4341 F-box protein containi 98.1 2.9E-08 6.3E-13 108.9 -9.5 273 791-1083 139-444 (483)
29 KOG3207 Beta-tubulin folding c 98.1 9.3E-07 2E-11 97.9 1.0 61 607-667 119-183 (505)
30 KOG4237 Extracellular matrix p 98.1 1.1E-07 2.4E-12 103.6 -6.4 99 586-685 85-194 (498)
31 KOG2120 SCF ubiquitin ligase, 98.1 3E-07 6.6E-12 96.6 -3.3 180 610-851 186-373 (419)
32 KOG3207 Beta-tubulin folding c 98.0 5.9E-07 1.3E-11 99.4 -2.5 197 816-1055 118-339 (505)
33 PF13855 LRR_8: Leucine rich r 98.0 8.2E-06 1.8E-10 67.9 4.2 58 609-667 1-60 (61)
34 PF14580 LRR_9: Leucine-rich r 97.9 3.4E-06 7.3E-11 85.7 1.1 77 590-668 17-100 (175)
35 PF14580 LRR_9: Leucine-rich r 97.9 9E-06 2E-10 82.6 3.8 132 605-753 15-149 (175)
36 KOG1909 Ran GTPase-activating 97.7 5.9E-06 1.3E-10 89.4 -0.5 144 707-875 153-311 (382)
37 KOG1259 Nischarin, modulator o 97.7 9.5E-06 2.1E-10 85.4 0.0 143 787-959 211-361 (490)
38 KOG1259 Nischarin, modulator o 97.7 8.3E-06 1.8E-10 85.8 -0.6 59 608-668 283-341 (490)
39 PLN03150 hypothetical protein; 97.6 7.3E-05 1.6E-09 92.6 5.6 75 604-678 437-512 (623)
40 PF12799 LRR_4: Leucine Rich r 97.6 7.3E-05 1.6E-09 57.3 3.4 40 609-649 1-40 (44)
41 PF13855 LRR_8: Leucine rich r 97.5 0.00012 2.7E-09 60.8 4.0 57 1019-1076 1-60 (61)
42 KOG0532 Leucine-rich repeat (L 97.3 1.6E-05 3.4E-10 91.0 -4.7 65 1010-1075 200-270 (722)
43 KOG0532 Leucine-rich repeat (L 97.2 1.9E-05 4.2E-10 90.3 -4.8 78 604-684 116-194 (722)
44 TIGR03015 pepcterm_ATPase puta 97.2 0.0048 1.1E-07 68.4 13.7 109 377-486 121-242 (269)
45 PLN03150 hypothetical protein; 97.1 0.00058 1.2E-08 84.7 6.0 71 610-680 419-490 (623)
46 KOG1909 Ran GTPase-activating 97.1 9.7E-05 2.1E-09 80.2 -0.8 238 591-852 29-309 (382)
47 KOG2120 SCF ubiquitin ligase, 97.0 4.3E-05 9.3E-10 80.8 -4.0 145 701-874 224-375 (419)
48 COG4886 Leucine-rich repeat (L 97.0 0.00042 9.1E-09 81.6 3.8 170 859-1074 113-286 (394)
49 PRK04841 transcriptional regul 97.0 0.0039 8.4E-08 82.0 12.8 185 378-576 120-331 (903)
50 COG4886 Leucine-rich repeat (L 96.9 0.00078 1.7E-08 79.3 4.2 58 610-668 141-198 (394)
51 PF12799 LRR_4: Leucine Rich r 96.7 0.0014 3.1E-08 50.1 2.7 37 632-669 1-37 (44)
52 KOG0531 Protein phosphatase 1, 96.4 0.00063 1.4E-08 80.5 -0.7 63 604-668 90-152 (414)
53 PF05729 NACHT: NACHT domain 96.3 0.011 2.4E-07 59.8 8.1 72 377-448 79-162 (166)
54 KOG3665 ZYG-1-like serine/thre 96.3 0.0021 4.5E-08 79.7 2.7 75 590-666 146-230 (699)
55 PRK06893 DNA replication initi 96.0 0.019 4.1E-07 61.9 8.2 140 337-482 40-203 (229)
56 KOG2982 Uncharacterized conser 95.9 0.0021 4.5E-08 68.4 0.0 58 607-667 69-132 (418)
57 KOG1947 Leucine rich repeat pr 95.9 0.00046 1E-08 83.4 -5.7 37 789-828 187-223 (482)
58 KOG3665 ZYG-1-like serine/thre 95.9 0.004 8.7E-08 77.2 2.2 126 592-722 122-261 (699)
59 KOG1859 Leucine-rich repeat pr 95.8 0.0014 3.1E-08 77.3 -2.0 32 609-641 187-218 (1096)
60 KOG2982 Uncharacterized conser 95.5 0.0096 2.1E-07 63.6 3.0 63 861-933 198-263 (418)
61 KOG0531 Protein phosphatase 1, 95.3 0.0047 1E-07 73.1 0.1 79 588-669 91-175 (414)
62 PRK13342 recombination factor 95.1 0.094 2E-06 61.9 10.0 144 336-483 36-197 (413)
63 PF00560 LRR_1: Leucine Rich R 95.0 0.0086 1.9E-07 38.3 0.6 21 610-630 1-21 (22)
64 KOG1947 Leucine rich repeat pr 94.6 0.0019 4.2E-08 78.0 -6.1 58 817-874 186-255 (482)
65 PF13173 AAA_14: AAA domain 94.2 0.058 1.3E-06 52.3 4.7 103 337-441 3-127 (128)
66 KOG1859 Leucine-rich repeat pr 94.1 0.0076 1.6E-07 71.5 -2.3 77 590-669 185-267 (1096)
67 PRK09087 hypothetical protein; 94.0 0.27 5.8E-06 52.8 9.5 135 337-481 45-194 (226)
68 KOG4579 Leucine-rich repeat (L 93.6 0.016 3.4E-07 55.2 -0.6 57 610-667 54-111 (177)
69 KOG2739 Leucine-rich acidic nu 93.6 0.035 7.5E-07 58.9 1.9 61 604-666 60-126 (260)
70 KOG4579 Leucine-rich repeat (L 93.5 0.014 3E-07 55.6 -1.1 88 564-668 41-135 (177)
71 COG2256 MGS1 ATPase related to 93.1 0.42 9.1E-06 54.0 9.2 136 336-476 48-206 (436)
72 KOG1644 U2-associated snRNP A' 92.9 0.11 2.5E-06 52.9 4.1 55 610-666 43-98 (233)
73 PF00560 LRR_1: Leucine Rich R 92.7 0.064 1.4E-06 34.3 1.4 22 633-655 1-22 (22)
74 PF05659 RPW8: Arabidopsis bro 92.1 0.12 2.5E-06 51.1 3.0 87 161-269 1-91 (147)
75 KOG2739 Leucine-rich acidic nu 92.0 0.062 1.3E-06 57.0 1.0 83 839-930 41-127 (260)
76 TIGR03420 DnaA_homol_Hda DnaA 91.8 0.53 1.2E-05 50.5 8.1 142 337-483 39-202 (226)
77 PRK00411 cdc6 cell division co 91.8 1.4 3E-05 51.8 12.3 120 364-484 121-257 (394)
78 PRK05564 DNA polymerase III su 91.4 1.6 3.4E-05 49.5 11.7 137 337-481 27-189 (313)
79 PF13504 LRR_7: Leucine rich r 91.2 0.13 2.7E-06 30.6 1.3 16 610-625 2-17 (17)
80 TIGR00635 ruvB Holliday juncti 91.2 0.83 1.8E-05 51.6 9.2 73 409-485 130-204 (305)
81 PRK00080 ruvB Holliday junctio 90.8 0.67 1.5E-05 52.9 8.0 72 409-484 151-224 (328)
82 KOG1644 U2-associated snRNP A' 90.5 0.45 9.7E-06 48.7 5.3 65 604-669 59-126 (233)
83 COG5238 RNA1 Ran GTPase-activa 90.0 0.083 1.8E-06 56.0 -0.2 41 628-668 88-132 (388)
84 TIGR00678 holB DNA polymerase 89.5 2.8 6E-05 43.5 10.7 91 377-477 94-186 (188)
85 PRK13341 recombination factor 89.5 1.4 2.9E-05 55.5 9.6 134 337-476 53-211 (725)
86 PLN03025 replication factor C 88.8 2.2 4.7E-05 48.6 10.1 94 378-478 98-196 (319)
87 COG5238 RNA1 Ran GTPase-activa 88.7 0.15 3.2E-06 54.2 0.4 141 608-755 29-196 (388)
88 PF01637 Arch_ATPase: Archaeal 88.0 2 4.3E-05 45.9 8.8 100 379-481 118-233 (234)
89 PRK06645 DNA polymerase III su 87.8 3.9 8.4E-05 49.2 11.6 99 377-479 126-226 (507)
90 PRK08727 hypothetical protein; 87.6 2 4.4E-05 46.3 8.4 138 337-479 42-201 (233)
91 KOG2123 Uncharacterized conser 87.0 0.054 1.2E-06 57.5 -3.9 74 591-666 18-98 (388)
92 PF13504 LRR_7: Leucine rich r 86.0 0.46 1E-05 28.2 1.3 17 1019-1036 1-17 (17)
93 KOG2123 Uncharacterized conser 84.5 0.078 1.7E-06 56.4 -4.2 78 860-956 39-123 (388)
94 smart00370 LRR Leucine-rich re 84.1 0.84 1.8E-05 30.3 2.1 21 608-628 1-21 (26)
95 smart00369 LRR_TYP Leucine-ric 84.1 0.84 1.8E-05 30.3 2.1 21 608-628 1-21 (26)
96 KOG3864 Uncharacterized conser 84.1 0.14 3E-06 52.3 -2.5 51 1000-1050 127-183 (221)
97 PF12061 DUF3542: Protein of u 83.8 1.5 3.3E-05 47.5 4.9 78 197-290 297-375 (402)
98 PRK14963 DNA polymerase III su 82.6 11 0.00024 45.5 12.2 104 377-484 114-220 (504)
99 KOG0473 Leucine-rich repeat pr 81.3 0.12 2.6E-06 53.6 -4.3 78 589-667 39-122 (326)
100 PRK08084 DNA replication initi 81.2 7.1 0.00015 42.2 9.1 97 381-481 99-208 (235)
101 PRK14961 DNA polymerase III su 81.2 14 0.00031 42.8 12.1 99 378-480 118-218 (363)
102 TIGR02928 orc1/cdc6 family rep 80.8 23 0.00051 40.9 14.0 116 367-482 115-247 (365)
103 COG1373 Predicted ATPase (AAA+ 79.8 7.3 0.00016 45.7 9.1 105 338-445 39-163 (398)
104 PRK07471 DNA polymerase III su 79.6 8.6 0.00019 44.4 9.5 97 378-482 140-238 (365)
105 PRK12323 DNA polymerase III su 78.9 17 0.00036 44.8 11.8 102 377-482 122-225 (700)
106 PRK07003 DNA polymerase III su 78.8 15 0.00033 45.8 11.5 103 378-484 118-223 (830)
107 PRK00440 rfc replication facto 78.8 14 0.00031 41.6 11.2 97 379-479 102-200 (319)
108 PRK05707 DNA polymerase III su 78.8 21 0.00046 40.6 12.2 97 378-482 105-203 (328)
109 KOG3864 Uncharacterized conser 78.7 0.3 6.5E-06 50.0 -2.3 63 786-851 121-186 (221)
110 COG2909 MalT ATP-dependent tra 78.4 9.1 0.0002 47.7 9.4 201 365-576 113-337 (894)
111 PRK05642 DNA replication initi 78.1 9 0.00019 41.4 8.6 140 337-481 46-207 (234)
112 TIGR01242 26Sp45 26S proteasom 78.0 4.9 0.00011 46.7 7.0 94 378-476 214-328 (364)
113 PRK14960 DNA polymerase III su 77.7 18 0.0004 44.5 11.7 101 377-481 116-218 (702)
114 PRK07940 DNA polymerase III su 76.9 26 0.00056 41.0 12.4 96 378-482 116-213 (394)
115 TIGR02903 spore_lon_C ATP-depe 76.6 8.1 0.00018 48.0 8.7 113 368-484 281-397 (615)
116 PRK06620 hypothetical protein; 76.4 16 0.00035 38.8 9.8 131 337-479 45-186 (214)
117 PRK08691 DNA polymerase III su 76.2 18 0.00038 45.0 11.1 101 377-481 117-219 (709)
118 TIGR02397 dnaX_nterm DNA polym 74.9 19 0.0004 41.5 10.8 101 378-482 116-218 (355)
119 PRK14949 DNA polymerase III su 74.5 25 0.00054 44.9 12.0 102 377-482 117-221 (944)
120 PRK12402 replication factor C 73.5 25 0.00055 40.0 11.4 100 378-481 124-225 (337)
121 PRK08903 DnaA regulatory inact 73.4 15 0.00032 39.4 8.8 144 337-486 43-203 (227)
122 PRK14957 DNA polymerase III su 72.9 20 0.00043 43.7 10.4 104 377-484 117-223 (546)
123 PRK04195 replication factor C 72.9 28 0.00062 42.0 11.9 138 337-480 40-200 (482)
124 COG3903 Predicted ATPase [Gene 72.0 1.5 3.2E-05 50.0 0.6 121 368-492 77-199 (414)
125 PRK14955 DNA polymerase III su 72.0 17 0.00037 42.7 9.5 101 378-482 126-229 (397)
126 PRK08451 DNA polymerase III su 71.9 36 0.00078 41.3 12.2 114 365-482 99-218 (535)
127 PRK14962 DNA polymerase III su 71.5 29 0.00064 41.6 11.4 104 377-484 115-221 (472)
128 PRK14956 DNA polymerase III su 71.4 25 0.00054 41.9 10.5 102 377-482 119-223 (484)
129 PRK14970 DNA polymerase III su 70.5 37 0.0008 39.4 11.9 102 378-483 107-211 (367)
130 PRK14086 dnaA chromosomal repl 70.0 8.6 0.00019 47.0 6.5 90 382-475 380-481 (617)
131 PRK14087 dnaA chromosomal repl 68.5 15 0.00032 43.9 8.0 103 380-484 207-321 (450)
132 PRK06871 DNA polymerase III su 67.6 70 0.0015 36.3 12.7 94 377-479 105-200 (325)
133 PRK14959 DNA polymerase III su 67.1 34 0.00074 42.2 10.7 106 377-486 117-225 (624)
134 cd00009 AAA The AAA+ (ATPases 66.4 7.8 0.00017 37.4 4.5 45 376-420 81-131 (151)
135 PRK14954 DNA polymerase III su 66.4 32 0.0007 42.7 10.5 103 377-483 125-230 (620)
136 PRK14964 DNA polymerase III su 66.4 44 0.00096 40.1 11.3 100 377-480 114-215 (491)
137 PRK09112 DNA polymerase III su 66.2 23 0.00051 40.7 8.8 99 378-482 140-240 (351)
138 PRK12422 chromosomal replicati 65.1 14 0.00029 44.1 6.8 71 381-451 204-286 (445)
139 smart00369 LRR_TYP Leucine-ric 64.3 3.6 7.7E-05 27.3 1.0 18 1043-1060 2-20 (26)
140 smart00370 LRR Leucine-rich re 64.3 3.6 7.7E-05 27.3 1.0 18 1043-1060 2-20 (26)
141 PRK07994 DNA polymerase III su 63.2 34 0.00074 42.5 9.9 102 377-482 117-221 (647)
142 PF13306 LRR_5: Leucine rich r 62.9 16 0.00035 34.7 5.9 37 891-928 6-44 (129)
143 PF05496 RuvB_N: Holliday junc 61.3 44 0.00096 35.5 8.9 138 336-480 50-219 (233)
144 PRK05896 DNA polymerase III su 60.8 71 0.0015 39.3 11.8 102 379-484 119-223 (605)
145 KOG0473 Leucine-rich repeat pr 59.3 0.63 1.4E-05 48.5 -4.9 79 604-684 37-116 (326)
146 PRK14951 DNA polymerase III su 58.4 93 0.002 38.6 12.4 100 378-481 123-224 (618)
147 TIGR00362 DnaA chromosomal rep 58.2 16 0.00034 43.2 5.7 93 382-478 202-306 (405)
148 PF13401 AAA_22: AAA domain; P 57.1 14 0.0003 35.3 4.2 54 363-418 70-125 (131)
149 PRK14969 DNA polymerase III su 56.8 81 0.0018 38.5 11.6 103 377-483 117-222 (527)
150 smart00364 LRR_BAC Leucine-ric 56.5 7 0.00015 26.1 1.3 17 610-626 3-19 (26)
151 COG0249 MutS Mismatch repair A 55.9 25 0.00054 45.2 7.1 99 378-486 685-792 (843)
152 PRK07133 DNA polymerase III su 55.7 95 0.0021 39.1 11.9 102 378-483 117-221 (725)
153 PRK07764 DNA polymerase III su 55.0 76 0.0016 40.9 11.2 100 377-480 118-219 (824)
154 PRK06305 DNA polymerase III su 55.0 97 0.0021 37.0 11.6 102 378-483 120-224 (451)
155 PRK06090 DNA polymerase III su 54.8 1.6E+02 0.0035 33.3 12.7 93 378-482 107-201 (319)
156 COG0593 DnaA ATPase involved i 54.7 44 0.00095 39.0 8.3 70 380-451 176-259 (408)
157 PRK14971 DNA polymerase III su 54.0 1.1E+02 0.0023 38.3 12.0 99 377-479 119-219 (614)
158 PF00004 AAA: ATPase family as 53.9 17 0.00038 34.5 4.4 53 339-391 1-70 (132)
159 PTZ00112 origin recognition co 53.2 68 0.0015 41.0 9.8 106 380-486 870-986 (1164)
160 COG3899 Predicted ATPase [Gene 53.1 44 0.00095 43.3 8.9 109 377-490 152-268 (849)
161 TIGR02880 cbbX_cfxQ probable R 52.1 83 0.0018 35.0 9.9 70 380-449 122-208 (284)
162 PRK03992 proteasome-activating 51.9 43 0.00093 39.2 7.9 44 408-451 269-317 (389)
163 PHA02544 44 clamp loader, smal 51.7 58 0.0013 36.8 8.8 111 336-446 43-170 (316)
164 PRK14958 DNA polymerase III su 51.2 96 0.0021 37.7 10.9 101 377-481 117-219 (509)
165 COG0542 clpA ATP-binding subun 50.6 1.2E+02 0.0027 38.3 11.6 49 370-418 583-643 (786)
166 CHL00181 cbbX CbbX; Provisiona 50.3 1.1E+02 0.0023 34.2 10.3 69 381-449 124-209 (287)
167 smart00365 LRR_SD22 Leucine-ri 49.5 12 0.00027 25.0 1.6 17 608-624 1-17 (26)
168 PRK00149 dnaA chromosomal repl 49.3 40 0.00086 40.4 7.3 94 381-478 213-318 (450)
169 PF00308 Bac_DnaA: Bacterial d 49.1 25 0.00055 37.4 5.0 104 373-481 92-207 (219)
170 PRK09111 DNA polymerase III su 49.1 1E+02 0.0022 38.2 10.8 101 378-482 131-233 (598)
171 PRK14950 DNA polymerase III su 48.6 1.7E+02 0.0038 36.3 12.8 101 378-482 119-221 (585)
172 TIGR02881 spore_V_K stage V sp 48.4 98 0.0021 33.9 9.7 67 381-449 107-191 (261)
173 PF13306 LRR_5: Leucine rich r 48.1 47 0.001 31.5 6.3 58 604-664 30-89 (129)
174 KOG0741 AAA+-type ATPase [Post 48.0 1E+02 0.0022 36.8 9.5 129 336-472 538-704 (744)
175 PF05673 DUF815: Protein of un 47.8 33 0.00071 36.9 5.4 83 337-423 53-155 (249)
176 PRK07993 DNA polymerase III su 47.4 1.9E+02 0.0042 33.0 12.0 95 377-480 106-202 (334)
177 COG3267 ExeA Type II secretory 47.1 1.2E+02 0.0026 32.9 9.3 105 377-483 128-246 (269)
178 smart00367 LRR_CC Leucine-rich 47.0 11 0.00024 25.0 1.2 16 950-965 2-17 (26)
179 PLN03194 putative disease resi 44.8 13 0.00029 38.0 1.9 45 237-285 112-156 (187)
180 KOG2028 ATPase related to the 43.8 85 0.0018 35.5 7.8 110 336-448 162-293 (554)
181 PRK14948 DNA polymerase III su 43.3 2E+02 0.0043 36.0 12.1 101 378-482 120-222 (620)
182 PRK14953 DNA polymerase III su 41.2 1.8E+02 0.004 35.1 11.1 102 377-482 117-220 (486)
183 PRK14088 dnaA chromosomal repl 40.8 49 0.0011 39.4 6.1 93 379-475 194-298 (440)
184 PRK06647 DNA polymerase III su 40.4 2.3E+02 0.005 34.9 11.9 101 377-481 117-219 (563)
185 PRK08058 DNA polymerase III su 39.5 1.1E+02 0.0025 34.7 8.7 72 377-448 108-181 (329)
186 PF13516 LRR_6: Leucine Rich r 37.5 9.6 0.00021 24.6 -0.3 12 657-668 3-14 (24)
187 PRK09183 transposase/IS protei 37.3 83 0.0018 34.5 6.8 39 379-418 164-205 (259)
188 PTZ00454 26S protease regulato 37.1 80 0.0017 37.0 7.0 113 337-449 180-329 (398)
189 PRK06526 transposase; Provisio 36.9 1.3E+02 0.0028 32.9 8.1 17 336-352 98-118 (254)
190 PF13177 DNA_pol3_delta2: DNA 36.6 99 0.0022 31.1 6.8 73 364-437 83-162 (162)
191 PRK14952 DNA polymerase III su 35.3 4E+02 0.0087 33.0 12.8 105 377-485 116-223 (584)
192 COG4618 ArpD ABC-type protease 34.9 63 0.0014 38.3 5.5 54 372-425 483-538 (580)
193 PRK08181 transposase; Validate 33.5 35 0.00077 37.6 3.2 37 381-418 169-208 (269)
194 PRK08769 DNA polymerase III su 33.5 1.5E+02 0.0032 33.6 8.1 95 378-482 112-208 (319)
195 PRK06964 DNA polymerase III su 32.7 2E+02 0.0043 33.0 9.0 92 378-481 131-224 (342)
196 PRK05563 DNA polymerase III su 32.5 3.4E+02 0.0075 33.4 11.8 100 377-480 117-218 (559)
197 PRK04132 replication factor C 32.4 2.6E+02 0.0056 36.1 10.8 116 363-482 608-732 (846)
198 PRK14965 DNA polymerase III su 32.0 2.4E+02 0.0052 34.9 10.3 102 378-483 118-222 (576)
199 PRK07261 topology modulation p 31.9 59 0.0013 33.1 4.3 51 338-390 2-68 (171)
200 smart00368 LRR_RI Leucine rich 31.7 34 0.00073 23.2 1.6 14 609-622 2-15 (28)
201 PRK07399 DNA polymerase III su 31.4 1.6E+02 0.0034 33.3 8.0 98 377-481 122-220 (314)
202 KOG0989 Replication factor C, 30.6 65 0.0014 35.7 4.4 97 381-484 131-233 (346)
203 CHL00176 ftsH cell division pr 30.3 1.9E+02 0.0041 36.2 9.0 133 337-474 217-386 (638)
204 TIGR01241 FtsH_fam ATP-depende 30.1 2.5E+02 0.0054 34.1 10.0 132 339-475 91-259 (495)
205 COG0497 RecN ATPase involved i 29.5 6.6E+02 0.014 30.7 12.8 45 382-426 456-501 (557)
206 PRK10787 DNA-binding ATP-depen 29.2 3.1E+02 0.0066 35.4 10.8 21 429-449 486-506 (784)
207 PRK08699 DNA polymerase III su 28.8 3.1E+02 0.0068 31.2 9.8 71 378-448 112-184 (325)
208 PTZ00361 26 proteosome regulat 28.7 1.4E+02 0.0031 35.4 7.2 42 408-449 321-367 (438)
209 COG2384 Predicted SAM-dependen 27.8 27 0.00058 36.8 0.9 53 336-388 86-143 (226)
210 COG2607 Predicted ATPase (AAA+ 26.1 1.1E+02 0.0023 32.9 4.9 42 377-418 137-182 (287)
211 TIGR01070 mutS1 DNA mismatch r 25.9 59 0.0013 42.1 3.7 100 378-486 670-777 (840)
212 PF00488 MutS_V: MutS domain V 25.4 1.2E+02 0.0025 32.8 5.4 47 378-425 121-172 (235)
213 cd00561 CobA_CobO_BtuR ATP:cor 25.0 1.2E+02 0.0026 30.5 5.0 50 371-420 86-139 (159)
214 KOG4354 N-acetyl-gamma-glutamy 24.6 1.4E+02 0.003 31.8 5.3 63 361-423 247-311 (340)
215 TIGR00763 lon ATP-dependent pr 24.3 5E+02 0.011 33.5 11.6 20 429-448 485-504 (775)
216 PRK08116 hypothetical protein; 21.1 66 0.0014 35.5 2.5 37 382-418 181-220 (268)
217 PRK07132 DNA polymerase III su 20.8 4.3E+02 0.0094 29.6 8.9 95 378-482 89-185 (299)
218 PF02463 SMC_N: RecF/RecN/SMC 20.4 66 0.0014 34.1 2.3 46 380-425 159-205 (220)
219 TIGR00602 rad24 checkpoint pro 20.3 3.9E+02 0.0085 33.4 9.1 71 378-449 194-287 (637)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=7.5e-61 Score=591.44 Aligned_cols=457 Identities=25% Similarity=0.372 Sum_probs=346.1
Q ss_pred HHHHHHHHHHhhhccchhhhhccchhhHHHhHHHHHHHHHHhchHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhhhhh
Q 046764 203 GCLADILLNQHGKHKAADIMGRIGASAAVFGFLTMMGTLIEVNPAVINAVIDDAEEKQKREQSVKMWLGELQNLAYDVDV 282 (1113)
Q Consensus 203 ~kl~~~l~~e~~~~~~v~~~~~~~d~~~i~~e~~~~~~fl~~~l~~i~~~l~dae~~~~~~~~v~~W~~~lr~~ayd~ed 282 (1113)
+|+..++..++..+.++ ++.+.-+++++..++. +++|+++++.....+..|.+.+++++|++||
T Consensus 10 ~~~~~~l~~~~~~~~~~-----~~~i~~Lk~~L~~l~~-----------~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~ 73 (889)
T KOG4658|consen 10 EKLDQLLNRESECLDGK-----DNYILELKENLKALQS-----------ALEDLDAKRDDLERRVNWEEDVGDLVYLAED 73 (889)
T ss_pred hhHHHHHHHHHHHHhch-----HHHHHHHHHHHHHHHH-----------HHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 55667777778777787 7777766665555554 4777999988889999999999999999999
Q ss_pred hhhhhhhhhhhh----------------------------------hHHHHHHhhccccccccccCCc--ccCCCCCCcc
Q 046764 283 LLDEFETEATDS----------------------------------RFEEILTQKDQLELKEKSLGKS--RKDRQRLPAV 326 (1113)
Q Consensus 283 ~id~~~~~~~~~----------------------------------~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 326 (1113)
.++.|..+.... |+.++.+....++......... .......++.
T Consensus 74 ~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~ 153 (889)
T KOG4658|consen 74 IIWLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETR 153 (889)
T ss_pred HHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccC
Confidence 999988655432 3444444444444332111100 0000011111
Q ss_pred cccccc-cce---------------eEEEEEEeccc----chhhhc------------------ccc-------------
Q 046764 327 HLQWAV-WAR---------------LHLLSLSIMMP----NIIRFI------------------ATA------------- 355 (1113)
Q Consensus 327 ~~~~ei-~G~---------------~~vi~I~G~gG----tLA~~v------------------i~~------------- 355 (1113)
+...+. ||. ..++||+|||| |||++| |+.
T Consensus 154 ~~~~~~~VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~ 233 (889)
T KOG4658|consen 154 PIQSESDVGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILE 233 (889)
T ss_pred CCCccccccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHH
Confidence 111111 333 78999999999 999999 110
Q ss_pred ----cCCcCCCCCHHHHHHHHHHHhcCcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEecCChhhHhh-hCCCce
Q 046764 356 ----DQPVNGTDELGLLQEKLKNQMSGKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTTRNRDVAAI-MGSVRD 430 (1113)
Q Consensus 356 ----~~~~~~~~~~~~l~~~l~~~L~~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTTR~~~va~~-~~~~~~ 430 (1113)
..........++++..|.+.|++|||+|||||||++ .+|+.|+.++|....||||++|||++.||.. |++...
T Consensus 234 ~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~ 311 (889)
T KOG4658|consen 234 RLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYP 311 (889)
T ss_pred HhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcc
Confidence 000012223468888999999999999999999999 8899999999999999999999999999999 888899
Q ss_pred EecCCCCHHHHHHHHHhcccCCCCCCCchhHHHHHHHHHHHhCCChHHHHHHHhhhcCCCCc------------------
Q 046764 431 YPLKESTKDDCLQVFTQHCLGMRDFSMQQSLKDISKKIVIRCNGLPLAAKTLAGLLRGKNDP------------------ 492 (1113)
Q Consensus 431 ~~l~~L~~~~s~~LF~~~af~~~~~~~~~~l~~i~~~I~~~c~GlPLAi~~ig~~L~~~~~~------------------ 492 (1113)
+++++|+.+|||.||++.||..... ..+.++++|++|+++|+|+|||++++|+.|+.|...
T Consensus 312 ~~v~~L~~~eaW~LF~~~v~~~~~~-~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~ 390 (889)
T KOG4658|consen 312 IEVECLTPEEAWDLFQKKVGPNTLG-SHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADF 390 (889)
T ss_pred ccccccCccccHHHHHHhhcccccc-ccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCC
Confidence 9999999999999999999876432 234599999999999999999999999999999865
Q ss_pred ------------------------ccccccccccccCcCCcccchhhHHHHHHHHcCCCccCCchhhHHHHHHHHHHHHH
Q 046764 493 ------------------------RFSACSIARYGIYQKNYEFHEEEEVTLLWMAEGFPYHIDTKEEIQDLGHKFFHELY 548 (1113)
Q Consensus 493 ------------------------cfly~~~~~~~~fp~~~~i~~~~~Li~~Wiaegfi~~~~~~~~~e~~~~~~~~~Lv 548 (1113)
||+||| +|||||+|++ ++||.+||||||+.+.+.++++++.|+.|+.+|+
T Consensus 391 ~~~~~~i~~iLklSyd~L~~~lK~CFLyca-----lFPED~~I~~-e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV 464 (889)
T KOG4658|consen 391 SGMEESILPILKLSYDNLPEELKSCFLYCA-----LFPEDYEIKK-EKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELV 464 (889)
T ss_pred CchhhhhHHhhhccHhhhhHHHHHHHHhhc-----cCCcccccch-HHHHHHHHhccCcCccccccchhcchHHHHHHHH
Confidence 999999 9999999999 9999999999999997778999999999999999
Q ss_pred hCCCccccC--CCCCceeechHHHHHHHHhcc-----ccC--cc------------c----------------ccccCCC
Q 046764 549 SRSSFQQSS--SDPCRFLMHDLINDLAQWAGD-----LDG--IK------------M----------------FEPFFEF 591 (1113)
Q Consensus 549 ~rsli~~~~--~~~~~~~mHdlv~d~~~~i~~-----~~~--~~------------~----------------~~~~~~l 591 (1113)
++||++..+ ++..+|+|||+|||||.|+++ .+. .. . ...-..+
T Consensus 465 ~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~ 544 (889)
T KOG4658|consen 465 RASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSEN 544 (889)
T ss_pred HHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCC
Confidence 999999876 467889999999999999954 111 00 0 0111245
Q ss_pred CCeeEEccCCcC---------CCCCCccccEEecCCC-CCcccChhhhccccccEEecccccccccccccccCCCcceEE
Q 046764 592 ENLQTFLPTTVS---------HGGDLKHLRHLDLSET-DIQILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHL 661 (1113)
Q Consensus 592 ~~Lr~L~~~~~~---------~i~~L~~Lr~L~Ls~~-~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L 661 (1113)
+++++|.+.++. +|..|+.||+|||++| .+.+||++|+.|.+||||++++ +.+..+|.++++|++|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhhee
Confidence 667777776653 3777888888888876 5678888888888888888887 6788888888888888888
Q ss_pred EcCCceecccccccccccc-ccccc
Q 046764 662 DNFDFCCWKDIDSALQELK-LLHLH 685 (1113)
Q Consensus 662 ~L~~~~i~~~~~~~l~~L~-L~~L~ 685 (1113)
++..+......+..+..|. |++|.
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~ 648 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLR 648 (889)
T ss_pred ccccccccccccchhhhcccccEEE
Confidence 8876643222233333344 44443
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3.3e-55 Score=571.77 Aligned_cols=662 Identities=18% Similarity=0.219 Sum_probs=394.2
Q ss_pred HHHHHHHHhchHHHHHHHHHHH------hhccchHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHHHhhcc-ccc
Q 046764 236 TMMGTLIEVNPAVINAVIDDAE------EKQKREQSVKMWLGELQNLAYDVDVLLDEFETEATDSRFEEILTQKDQ-LEL 308 (1113)
Q Consensus 236 ~~~~~fl~~~l~~i~~~l~dae------~~~~~~~~v~~W~~~lr~~ayd~ed~id~~~~~~~~~~~~~i~~~~~~-~~~ 308 (1113)
.++++||++++++|+.....-. .+....+.++.|++++.++|.-+....+.+..+.. -+++|++.... +..
T Consensus 100 ~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~~E~~--~i~~Iv~~v~~~l~~ 177 (1153)
T PLN03210 100 LVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQNWPNEAK--MIEEIANDVLGKLNL 177 (1153)
T ss_pred eEEEEEecccHHHHhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhCcCceecCCCCCHHH--HHHHHHHHHHHhhcc
Confidence 3689999999999995432211 11225578999999999999877765554443321 34444443322 111
Q ss_pred cccccCCcccCCCCCCcccccccccce-----------------eEEEEEEeccc----chhhhcccc---c--------
Q 046764 309 KEKSLGKSRKDRQRLPAVHLQWAVWAR-----------------LHLLSLSIMMP----NIIRFIATA---D-------- 356 (1113)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~ei~G~-----------------~~vi~I~G~gG----tLA~~vi~~---~-------- 356 (1113)
. .... .+++||+ ++||+|||||| |||+++... .
T Consensus 178 ~--~~~~-------------~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~ 242 (1153)
T PLN03210 178 T--PSND-------------FEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFID 242 (1153)
T ss_pred c--cCcc-------------cccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEee
Confidence 0 0000 0002222 89999999999 999998110 0
Q ss_pred -------CCcCC-----CCC-HH----HH--------------HHHHHHHhcCcEEEEEEecCCCCChhhhhhhcccccC
Q 046764 357 -------QPVNG-----TDE-LG----LL--------------QEKLKNQMSGKKFLLVLGDVWNENYSDWDSLSLPFEA 405 (1113)
Q Consensus 357 -------~~~~~-----~~~-~~----~l--------------~~~l~~~L~~kr~LiVLDDv~~~~~~~w~~l~~~l~~ 405 (1113)
..... ..+ .. ++ ...+++.|++||+||||||||+. .+|+.+.....+
T Consensus 243 ~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~ 320 (1153)
T PLN03210 243 RAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQW 320 (1153)
T ss_pred ccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCcc
Confidence 00000 000 00 00 13467889999999999999998 889999988888
Q ss_pred CCCCcEEEEecCChhhHhhhCCCceEecCCCCHHHHHHHHHhcccCCCCCCCchhHHHHHHHHHHHhCCChHHHHHHHhh
Q 046764 406 GAPGSQIIVTTRNRDVAAIMGSVRDYPLKESTKDDCLQVFTQHCLGMRDFSMQQSLKDISKKIVIRCNGLPLAAKTLAGL 485 (1113)
Q Consensus 406 ~~~gSrIivTTR~~~va~~~~~~~~~~l~~L~~~~s~~LF~~~af~~~~~~~~~~l~~i~~~I~~~c~GlPLAi~~ig~~ 485 (1113)
.++|||||||||+++++..++++++|+|+.+++++||+||+++||+... +++++.+++++|+++|+|+|||++++|+.
T Consensus 321 ~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~ 398 (1153)
T PLN03210 321 FGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSY 398 (1153)
T ss_pred CCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 8899999999999999998888899999999999999999999998653 34678999999999999999999999999
Q ss_pred hcCCCCc-----------------------------------ccccccccccccCcCCcccchhhHHHHHHHHcCCCccC
Q 046764 486 LRGKNDP-----------------------------------RFSACSIARYGIYQKNYEFHEEEEVTLLWMAEGFPYHI 530 (1113)
Q Consensus 486 L~~~~~~-----------------------------------cfly~~~~~~~~fp~~~~i~~~~~Li~~Wiaegfi~~~ 530 (1113)
|+++... ||+|+| .|+.+..+ +.+..|+|.+....
T Consensus 399 L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia-----~ff~~~~~----~~v~~~l~~~~~~~- 468 (1153)
T PLN03210 399 LRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIA-----CLFNGEKV----NDIKLLLANSDLDV- 468 (1153)
T ss_pred HcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheeh-----hhcCCCCH----HHHHHHHHhcCCCc-
Confidence 9987543 677776 66665433 33556666543322
Q ss_pred CchhhHHHHHHHHHHHHHhCCCccccCCCCCceeechHHHHHHHHhccccCc--cc-------------ccccCCCCCee
Q 046764 531 DTKEEIQDLGHKFFHELYSRSSFQQSSSDPCRFLMHDLINDLAQWAGDLDGI--KM-------------FEPFFEFENLQ 595 (1113)
Q Consensus 531 ~~~~~~e~~~~~~~~~Lv~rsli~~~~~~~~~~~mHdlv~d~~~~i~~~~~~--~~-------------~~~~~~l~~Lr 595 (1113)
+.-++.|+++|||+... ..++|||++|+||+.+...+.. .+ +.......+++
T Consensus 469 ----------~~~l~~L~~ksLi~~~~---~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~ 535 (1153)
T PLN03210 469 ----------NIGLKNLVDKSLIHVRE---DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVL 535 (1153)
T ss_pred ----------hhChHHHHhcCCEEEcC---CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceee
Confidence 12388999999998754 4699999999999999533210 00 01112223444
Q ss_pred EEccCC---------cCCCCCCccccEEecCCCCC------c-ccChhhhccc-cccEEecccccccccccccccCCCcc
Q 046764 596 TFLPTT---------VSHGGDLKHLRHLDLSETDI------Q-ILPESVNTLY-NLRMLMLQKCNQLEKMCSDMGNLLKL 658 (1113)
Q Consensus 596 ~L~~~~---------~~~i~~L~~Lr~L~Ls~~~i------~-~LP~~i~~L~-~L~~LdL~~c~~l~~LP~~i~~L~~L 658 (1113)
.+.+.- ...|.+|++|++|.+..+.. . .+|..+..++ +|++|++.+ +.++.+|..+ ...+|
T Consensus 536 ~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~-~~l~~lP~~f-~~~~L 613 (1153)
T PLN03210 536 GITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDK-YPLRCMPSNF-RPENL 613 (1153)
T ss_pred EEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecC-CCCCCCCCcC-CccCC
Confidence 332211 11577888888888865532 1 4677777664 588888887 4678888877 56788
Q ss_pred eEEEcCCceeccccccccccccccccccceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhc
Q 046764 659 HHLDNFDFCCWKDIDSALQELKLLHLHGALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLD 738 (1113)
Q Consensus 659 ~~L~L~~~~i~~~~~~~l~~L~L~~L~g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~ 738 (1113)
++|++.++.+.. .+ ..+..+++|+.|+++.+.... .+.
T Consensus 614 ~~L~L~~s~l~~-L~-------------------------------~~~~~l~~Lk~L~Ls~~~~l~----------~ip 651 (1153)
T PLN03210 614 VKLQMQGSKLEK-LW-------------------------------DGVHSLTGLRNIDLRGSKNLK----------EIP 651 (1153)
T ss_pred cEEECcCccccc-cc-------------------------------cccccCCCCCEEECCCCCCcC----------cCC
Confidence 888887763311 11 123445667777775543111 112
Q ss_pred cCCCCCCcceEEEeccCccccccCcccccccccCCCcccceEecCCCCCCCCCcceeeccccCcCcccccCCCCcccccC
Q 046764 739 MLKPHQNLERFCISGYGETLRFENMQEREDWIPYSSSQEVEFYGNGCLIPFPSLETLRFENMQEREDWIPYSSSQEVEVF 818 (1113)
Q Consensus 739 ~L~~~~~L~~L~L~~~~~~~~l~~L~~L~~~Lpl~~l~~~~~~g~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 818 (1113)
.+..+++|+.|++.+|.... . +| ..+..+++|+.|++++|..++.++. . ..+
T Consensus 652 ~ls~l~~Le~L~L~~c~~L~------~----lp------------~si~~L~~L~~L~L~~c~~L~~Lp~-----~-i~l 703 (1153)
T PLN03210 652 DLSMATNLETLKLSDCSSLV------E----LP------------SSIQYLNKLEDLDMSRCENLEILPT-----G-INL 703 (1153)
T ss_pred ccccCCcccEEEecCCCCcc------c----cc------------hhhhccCCCCEEeCCCCCCcCccCC-----c-CCC
Confidence 24445566666665543211 1 11 2334455666666666655554431 1 145
Q ss_pred CCccEEEEecCcCcccccCCCCCCccEEEEeccc--CccccCCCCCcccEEEEeccCCCCcccCCCccccccccccCCCC
Q 046764 819 PNLRDLFLLRCSKLLGTLPKHLPSLQKLVIQRCE--KLLVDLPSLPSLNELKLGGCKKGGLQKGQPIIGRRIHYGCADTS 896 (1113)
Q Consensus 819 ~~L~~L~L~~c~~L~~~lp~~l~~L~~L~L~~c~--~L~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~~l 896 (1113)
++|+.|++++|..+. .+|...++|+.|+++++. .++..+ .+++|++|.+.++......
T Consensus 704 ~sL~~L~Lsgc~~L~-~~p~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~------------------ 763 (1153)
T PLN03210 704 KSLYRLNLSGCSRLK-SFPDISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLW------------------ 763 (1153)
T ss_pred CCCCEEeCCCCCCcc-ccccccCCcCeeecCCCccccccccc-cccccccccccccchhhcc------------------
Confidence 566666666665544 455544555555555543 111000 2344444444443321100
Q ss_pred CCcccccccCCCCC--cCcccCCCCCCceEEEcccCCCcccccccCCCCCcccCCCCccEEEeecCCCCcccCCCCCcCC
Q 046764 897 SSLRVCLQCCNSLT--NNARVQLPLSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHILSCPSPTSIFSENELPA 974 (1113)
Q Consensus 897 ~~L~~L~~~~N~L~--~~~~l~~l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~c~~L~~ll~~~~l~~ 974 (1113)
+.+. .+.....+++|+.|++++|+.+..+ | ..+. ++++|+.|+|++|+.++. +|....++
T Consensus 764 ----------~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~l-P-----~si~-~L~~L~~L~Ls~C~~L~~-LP~~~~L~ 825 (1153)
T PLN03210 764 ----------ERVQPLTPLMTMLSPSLTRLFLSDIPSLVEL-P-----SSIQ-NLHKLEHLEIENCINLET-LPTGINLE 825 (1153)
T ss_pred ----------ccccccchhhhhccccchheeCCCCCCcccc-C-----hhhh-CCCCCCEEECCCCCCcCe-eCCCCCcc
Confidence 0000 1111223567888888888755554 3 3333 778888888888877776 44432233
Q ss_pred ccCeEEEccccccccccccCCCCCCCeEEEEecCCCccccCCC---CCCccEEEEeecCCCCcccccCCCCCCcCeeee-
Q 046764 975 TLQRLEVNSCSKLALLTLSGNLPQGPKYLELTSCSKWESIADN---NTSLQVITVFRCKNLKTLPDGLHKLNNLQAFTI- 1050 (1113)
Q Consensus 975 sL~~L~i~~c~~L~~l~l~~~lp~~L~~L~L~~c~~L~~lp~~---l~sL~~L~Ls~c~~l~~lP~~l~~L~sL~~L~L- 1050 (1113)
+|+.|++++|..++.+. ..+..|+.|++++ +.++.+|.. +++|+.|++++|+.++.+|..+..+++|+.|++
T Consensus 826 sL~~L~Ls~c~~L~~~p---~~~~nL~~L~Ls~-n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~ 901 (1153)
T PLN03210 826 SLESLDLSGCSRLRTFP---DISTNISDLNLSR-TGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFS 901 (1153)
T ss_pred ccCEEECCCCCcccccc---ccccccCEeECCC-CCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecC
Confidence 55555555555554322 1112244444444 234444433 444444444444444444444444444444444
Q ss_pred -ccccc
Q 046764 1051 -CKNLV 1055 (1113)
Q Consensus 1051 -cn~L~ 1055 (1113)
|.++.
T Consensus 902 ~C~~L~ 907 (1153)
T PLN03210 902 DCGALT 907 (1153)
T ss_pred CCcccc
Confidence 44444
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=1.2e-28 Score=322.54 Aligned_cols=451 Identities=18% Similarity=0.161 Sum_probs=266.9
Q ss_pred CCCCeeEEccCCcC-----CCCCCccccEEecCCCCCc-ccChhhhccccccEEecccccccccccccccCCCcceEEEc
Q 046764 590 EFENLQTFLPTTVS-----HGGDLKHLRHLDLSETDIQ-ILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDN 663 (1113)
Q Consensus 590 ~l~~Lr~L~~~~~~-----~i~~L~~Lr~L~Ls~~~i~-~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L 663 (1113)
.+++||.|.+.++. ..+.+++|++|+|++|.+. .+|..++++++|++|+|++|.....+|..++++++|++|++
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence 55666666665543 2345666777777776665 45666777777777777765555566666777777777777
Q ss_pred CCceecccccccccccc-ccccccceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCC
Q 046764 664 FDFCCWKDIDSALQELK-LLHLHGALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKP 742 (1113)
Q Consensus 664 ~~~~i~~~~~~~l~~L~-L~~L~g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~ 742 (1113)
++|.+....|..+..+. |+.|. +..+.+ ....+..++++++|+.|+++.|...+ ..+..+..
T Consensus 196 ~~n~l~~~~p~~l~~l~~L~~L~--L~~n~l------~~~~p~~l~~l~~L~~L~L~~n~l~~---------~~p~~l~~ 258 (968)
T PLN00113 196 ASNQLVGQIPRELGQMKSLKWIY--LGYNNL------SGEIPYEIGGLTSLNHLDLVYNNLTG---------PIPSSLGN 258 (968)
T ss_pred cCCCCcCcCChHHcCcCCccEEE--CcCCcc------CCcCChhHhcCCCCCEEECcCceecc---------ccChhHhC
Confidence 77666555566666555 55443 211111 11223345666677777776554221 13344555
Q ss_pred CCCcceEEEeccCccc-------cccCcccccccccCCCcccceEecC--CCCCCCCCcceeeccccCcCcccccCCCCc
Q 046764 743 HQNLERFCISGYGETL-------RFENMQEREDWIPYSSSQEVEFYGN--GCLIPFPSLETLRFENMQEREDWIPYSSSQ 813 (1113)
Q Consensus 743 ~~~L~~L~L~~~~~~~-------~l~~L~~L~~~Lpl~~l~~~~~~g~--~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~ 813 (1113)
+++|+.|+++++.... .+.+|..|. + .+..+.+. ..+..+++|+.|+++++...... +.
T Consensus 259 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~----L---s~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~-----~~ 326 (968)
T PLN00113 259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLD----L---SDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI-----PV 326 (968)
T ss_pred CCCCCEEECcCCeeeccCchhHhhccCcCEEE----C---cCCeeccCCChhHcCCCCCcEEECCCCccCCcC-----Ch
Confidence 6667777666543221 111111111 0 00000000 22234455555555543221111 12
Q ss_pred ccccCCCccEEEEecCcCcccccCC---CCCCccEEEEeccc---CccccCCCCCcccEEEEeccCCCCcccCCCccccc
Q 046764 814 EVEVFPNLRDLFLLRCSKLLGTLPK---HLPSLQKLVIQRCE---KLLVDLPSLPSLNELKLGGCKKGGLQKGQPIIGRR 887 (1113)
Q Consensus 814 ~~~~~~~L~~L~L~~c~~L~~~lp~---~l~~L~~L~L~~c~---~L~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~ 887 (1113)
....+++|+.|++++| .+.+.+|. .+++|+.|++++|. .++..+..+++|+.|++++|......+
T Consensus 327 ~~~~l~~L~~L~L~~n-~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p-------- 397 (968)
T PLN00113 327 ALTSLPRLQVLQLWSN-KFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP-------- 397 (968)
T ss_pred hHhcCCCCCEEECcCC-CCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCC--------
Confidence 3344555555555555 34334443 34455555555552 122223334555555555555443222
Q ss_pred cccccCCCCCCcccccccCCCCC--cCcccCCCCCCceEEEcccCCCcccccccCCCCCcccCCCCccEEEeecCCCCcc
Q 046764 888 IHYGCADTSSSLRVCLQCCNSLT--NNARVQLPLSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHILSCPSPTS 965 (1113)
Q Consensus 888 l~~~~~~~l~~L~~L~~~~N~L~--~~~~l~~l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~c~~L~~ 965 (1113)
..+..+++|+.|.+.+|.+. .+..+..+++|+.|++++|. +.. .+|..+. .+++|+.|++++|.....
T Consensus 398 ---~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~-----~~~~~~~-~l~~L~~L~L~~n~~~~~ 467 (968)
T PLN00113 398 ---KSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN-LQG-----RINSRKW-DMPSLQMLSLARNKFFGG 467 (968)
T ss_pred ---HHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc-ccC-----ccChhhc-cCCCCcEEECcCceeeee
Confidence 34567788888877777776 56667788888888888876 332 2333333 678888999888876554
Q ss_pred cCCCCCcCCccCeEEEccccccccccc-cCCCCCCCeEEEEecCCCccccCCC---CCCccEEEEeecCCCCcccccCCC
Q 046764 966 IFSENELPATLQRLEVNSCSKLALLTL-SGNLPQGPKYLELTSCSKWESIADN---NTSLQVITVFRCKNLKTLPDGLHK 1041 (1113)
Q Consensus 966 ll~~~~l~~sL~~L~i~~c~~L~~l~l-~~~lp~~L~~L~L~~c~~L~~lp~~---l~sL~~L~Ls~c~~l~~lP~~l~~ 1041 (1113)
+|...-..+|+.|++++|.-...+.. -.++++ |+.|++++|.-...+|.. +++|++|+|++|...+.+|..+..
T Consensus 468 -~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 545 (968)
T PLN00113 468 -LPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSE-LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSE 545 (968)
T ss_pred -cCcccccccceEEECcCCccCCccChhhhhhhc-cCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhC
Confidence 44332224788888887754332221 124555 999999998666677765 889999999999888888999999
Q ss_pred CCCcCeeee-ccccc-cccCCCCCCCCcCcEEEeCCCCCccCCCCCCCCCc
Q 046764 1042 LNNLQAFTI-CKNLV-SFPKGGLPSTQLRDPDITGCQKLEALPDGDLSSTF 1090 (1113)
Q Consensus 1042 L~sL~~L~L-cn~L~-slp~~~~~~~sL~~L~l~~C~~L~~l~~~~l~~sL 1090 (1113)
+++|+.|++ .|++. .+|.....+++|+.|++++|+-...+|..+...++
T Consensus 546 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~ 596 (968)
T PLN00113 546 MPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAI 596 (968)
T ss_pred cccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhccc
Confidence 999999999 77776 67876667778999999999888788875443333
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=4.5e-28 Score=317.25 Aligned_cols=463 Identities=18% Similarity=0.165 Sum_probs=295.4
Q ss_pred ccCCCCCeeEEccCCcC--------CCCCCccccEEecCCCCCc-ccChhhhccccccEEecccccccccccccccCCCc
Q 046764 587 PFFEFENLQTFLPTTVS--------HGGDLKHLRHLDLSETDIQ-ILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLK 657 (1113)
Q Consensus 587 ~~~~l~~Lr~L~~~~~~--------~i~~L~~Lr~L~Ls~~~i~-~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~ 657 (1113)
.+..+++|++|.+.++. .+..+++||+|+|++|++. .+|. +.+++|++|+|++|.....+|..++++++
T Consensus 88 ~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~ 165 (968)
T PLN00113 88 AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSS 165 (968)
T ss_pred HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCC
Confidence 45567888888877654 2347788888888888876 3453 56788888888886655678888888888
Q ss_pred ceEEEcCCceecccccccccccc-ccccccceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhh
Q 046764 658 LHHLDNFDFCCWKDIDSALQELK-LLHLHGALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHV 736 (1113)
Q Consensus 658 L~~L~L~~~~i~~~~~~~l~~L~-L~~L~g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~ 736 (1113)
|++|++++|.+....|..+.++. |+.|. +.-+.+ ....+..++.+++|+.|++++|...+ ..
T Consensus 166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~--L~~n~l------~~~~p~~l~~l~~L~~L~L~~n~l~~---------~~ 228 (968)
T PLN00113 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLT--LASNQL------VGQIPRELGQMKSLKWIYLGYNNLSG---------EI 228 (968)
T ss_pred CCEEECccCcccccCChhhhhCcCCCeee--ccCCCC------cCcCChHHcCcCCccEEECcCCccCC---------cC
Confidence 88888888877667777777777 66654 222211 12234457788888888887775322 23
Q ss_pred hccCCCCCCcceEEEeccCccc----cccCcccccccccCCCcccceEecC--CCCCCCCCcceeeccccCcCcccccCC
Q 046764 737 LDMLKPHQNLERFCISGYGETL----RFENMQEREDWIPYSSSQEVEFYGN--GCLIPFPSLETLRFENMQEREDWIPYS 810 (1113)
Q Consensus 737 l~~L~~~~~L~~L~L~~~~~~~----~l~~L~~L~~~Lpl~~l~~~~~~g~--~~l~~~~~L~~L~L~~~~~l~~~~~~~ 810 (1113)
+..+..+++|+.|+++++.... .+.++.+|+ .+ .+....+.+. ..+..+++|+.|+++++.-....
T Consensus 229 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~-~L---~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~---- 300 (968)
T PLN00113 229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQ-YL---FLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI---- 300 (968)
T ss_pred ChhHhcCCCCCEEECcCceeccccChhHhCCCCCC-EE---ECcCCeeeccCchhHhhccCcCEEECcCCeeccCC----
Confidence 4456677888888888764322 112221111 00 0000011110 23344555666666554321111
Q ss_pred CCcccccCCCccEEEEecCcCcccccCC---CCCCccEEEEeccc---CccccCCCCCcccEEEEeccCCCCcccCCCcc
Q 046764 811 SSQEVEVFPNLRDLFLLRCSKLLGTLPK---HLPSLQKLVIQRCE---KLLVDLPSLPSLNELKLGGCKKGGLQKGQPII 884 (1113)
Q Consensus 811 ~~~~~~~~~~L~~L~L~~c~~L~~~lp~---~l~~L~~L~L~~c~---~L~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~ 884 (1113)
+.....+++|+.|++++| .+.+.+|. .+++|+.|++++|. .++..+..+++|+.|++++|......
T Consensus 301 -p~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~------ 372 (968)
T PLN00113 301 -PELVIQLQNLEILHLFSN-NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI------ 372 (968)
T ss_pred -ChhHcCCCCCcEEECCCC-ccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeC------
Confidence 223345556666666665 34334443 35566666666553 22223334556666666666544322
Q ss_pred ccccccccCCCCCCcccccccCCCCC--cCcccCCCCCCceEEEcccCCCcccccccCCCCCcccCCCCccEEEeecCCC
Q 046764 885 GRRIHYGCADTSSSLRVCLQCCNSLT--NNARVQLPLSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHILSCPS 962 (1113)
Q Consensus 885 ~l~l~~~~~~~l~~L~~L~~~~N~L~--~~~~l~~l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~c~~ 962 (1113)
+..+..+++|+.|.+..|.+. .+..+..+++|+.|++++|. +. +.+|..+. .+++|+.|++++|..
T Consensus 373 -----p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~-l~-----~~~p~~~~-~l~~L~~L~Ls~N~l 440 (968)
T PLN00113 373 -----PEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS-FS-----GELPSEFT-KLPLVYFLDISNNNL 440 (968)
T ss_pred -----ChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE-ee-----eECChhHh-cCCCCCEEECcCCcc
Confidence 234556677888877777776 55667778888888888886 22 23454454 788899999988764
Q ss_pred CcccCCC--CCcCCccCeEEEccccccccccccCCCCCCCeEEEEecCCCccccCCC---CCCccEEEEeecCCCCcccc
Q 046764 963 PTSIFSE--NELPATLQRLEVNSCSKLALLTLSGNLPQGPKYLELTSCSKWESIADN---NTSLQVITVFRCKNLKTLPD 1037 (1113)
Q Consensus 963 L~~ll~~--~~l~~sL~~L~i~~c~~L~~l~l~~~lp~~L~~L~L~~c~~L~~lp~~---l~sL~~L~Ls~c~~l~~lP~ 1037 (1113)
... ++. ..++ +|+.|++++|.-...+.-....+. |+.|++++|.-...+|.. +++|+.|++++|...+.+|.
T Consensus 441 ~~~-~~~~~~~l~-~L~~L~L~~n~~~~~~p~~~~~~~-L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 517 (968)
T PLN00113 441 QGR-INSRKWDMP-SLQMLSLARNKFFGGLPDSFGSKR-LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPD 517 (968)
T ss_pred cCc-cChhhccCC-CCcEEECcCceeeeecCccccccc-ceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCCh
Confidence 433 332 2343 788999988865543332222334 999999998666666665 88999999999988888999
Q ss_pred cCCCCCCcCeeee-ccccc-cccCCCCCCCCcCcEEEeCCCCCccCCCC-CCCCCcCcccccccc
Q 046764 1038 GLHKLNNLQAFTI-CKNLV-SFPKGGLPSTQLRDPDITGCQKLEALPDG-DLSSTFKTGKSSKCG 1099 (1113)
Q Consensus 1038 ~l~~L~sL~~L~L-cn~L~-slp~~~~~~~sL~~L~l~~C~~L~~l~~~-~l~~sL~~L~~~~c~ 1099 (1113)
.+.++++|+.|+| .|.+. .+|.....+++|+.|++++|.-...+|.. .-..+|+.+++++|.
T Consensus 518 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~ 582 (968)
T PLN00113 518 ELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNH 582 (968)
T ss_pred HHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCc
Confidence 9999999999999 77776 46655556789999999998877677752 112358888888874
No 5
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.92 E-value=7.8e-26 Score=253.80 Aligned_cols=186 Identities=31% Similarity=0.532 Sum_probs=142.7
Q ss_pred eEEEEEEeccc----chhhhcc----------------------------------cccC-CcCCCCCHHHHHHHHHHHh
Q 046764 336 LHLLSLSIMMP----NIIRFIA----------------------------------TADQ-PVNGTDELGLLQEKLKNQM 376 (1113)
Q Consensus 336 ~~vi~I~G~gG----tLA~~vi----------------------------------~~~~-~~~~~~~~~~l~~~l~~~L 376 (1113)
.++|+|+|||| |||+++. .... ......+.+++...+++.|
T Consensus 19 ~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L 98 (287)
T PF00931_consen 19 VRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELL 98 (287)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHH
T ss_pred eEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhh
Confidence 68999999999 8998870 1110 0013457788999999999
Q ss_pred cCcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEecCChhhHhhhCC-CceEecCCCCHHHHHHHHHhcccCCCCC
Q 046764 377 SGKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTTRNRDVAAIMGS-VRDYPLKESTKDDCLQVFTQHCLGMRDF 455 (1113)
Q Consensus 377 ~~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTTR~~~va~~~~~-~~~~~l~~L~~~~s~~LF~~~af~~~~~ 455 (1113)
+++|+||||||||+. ..|+.+...++....||+||||||+..++..++. ..++++++|+.+||++||.+.++... .
T Consensus 99 ~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~-~ 175 (287)
T PF00931_consen 99 KDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKE-S 175 (287)
T ss_dssp CCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS--
T ss_pred ccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence 999999999999998 7999999888888889999999999999987765 57899999999999999999997655 2
Q ss_pred CCchhHHHHHHHHHHHhCCChHHHHHHHhhhcCCCCc-----------------------------------------cc
Q 046764 456 SMQQSLKDISKKIVIRCNGLPLAAKTLAGLLRGKNDP-----------------------------------------RF 494 (1113)
Q Consensus 456 ~~~~~l~~i~~~I~~~c~GlPLAi~~ig~~L~~~~~~-----------------------------------------cf 494 (1113)
...+.+.+++++|+++|+|+|||++++|++|+.+... ||
T Consensus 176 ~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f 255 (287)
T PF00931_consen 176 ESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDELRRCF 255 (287)
T ss_dssp ---TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCCccHHHHH
Confidence 2335567789999999999999999999999554322 99
Q ss_pred ccccccccccCcCCcccchhhHHHHHHHHcCCCccC
Q 046764 495 SACSIARYGIYQKNYEFHEEEEVTLLWMAEGFPYHI 530 (1113)
Q Consensus 495 ly~~~~~~~~fp~~~~i~~~~~Li~~Wiaegfi~~~ 530 (1113)
.||+ +||+++.|++ +.++++|++||||...
T Consensus 256 ~~L~-----~f~~~~~i~~-~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 256 LYLS-----IFPEGVPIPR-ERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHGG-----GSGTTS-EEH-HHHHHHHTT-HHTC--
T ss_pred hhCc-----CCCCCceECH-HHHHHHHHHCCCCccc
Confidence 9999 9999999999 9999999999999873
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=6.2e-21 Score=250.21 Aligned_cols=329 Identities=21% Similarity=0.233 Sum_probs=237.9
Q ss_pred cccCCCCCeeEEccCCcC-------------CCCCC-ccccEEecCCCCCcccChhhhccccccEEeccccccccccccc
Q 046764 586 EPFFEFENLQTFLPTTVS-------------HGGDL-KHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCSD 651 (1113)
Q Consensus 586 ~~~~~l~~Lr~L~~~~~~-------------~i~~L-~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~ 651 (1113)
..|.++++|+.|.+.... .+..+ .+||+|++.++.++.+|..+ .+.+|+.|++++| .+..+|.+
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s-~l~~L~~~ 629 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGS-KLEKLWDG 629 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCc-cccccccc
Confidence 346678888888764321 23344 46999999999999999988 5799999999984 68999999
Q ss_pred ccCCCcceEEEcCCceeccccccccccccccccccceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCch
Q 046764 652 MGNLLKLHHLDNFDFCCWKDIDSALQELKLLHLHGALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPE 731 (1113)
Q Consensus 652 i~~L~~L~~L~L~~~~i~~~~~~~l~~L~L~~L~g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~ 731 (1113)
+..+++|+.|+++++...+..| .+..+++|+.|+++.|...
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip--------------------------------~ls~l~~Le~L~L~~c~~L------- 670 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIP--------------------------------DLSMATNLETLKLSDCSSL------- 670 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCC--------------------------------ccccCCcccEEEecCCCCc-------
Confidence 9999999999998763211111 1344567777877665421
Q ss_pred hhHhhhccCCCCCCcceEEEeccCccccccCcccccccccCCCcccceEecCCCCCCCCCcceeeccccCcCcccccCCC
Q 046764 732 IETHVLDMLKPHQNLERFCISGYGETLRFENMQEREDWIPYSSSQEVEFYGNGCLIPFPSLETLRFENMQEREDWIPYSS 811 (1113)
Q Consensus 732 ~~~~~l~~L~~~~~L~~L~L~~~~~~~~l~~L~~L~~~Lpl~~l~~~~~~g~~~l~~~~~L~~L~L~~~~~l~~~~~~~~ 811 (1113)
...+..+..+++|+.|++++|..... + | . ...+++|+.|.+++|..+..++.
T Consensus 671 --~~lp~si~~L~~L~~L~L~~c~~L~~------L----p------------~-~i~l~sL~~L~Lsgc~~L~~~p~--- 722 (1153)
T PLN03210 671 --VELPSSIQYLNKLEDLDMSRCENLEI------L----P------------T-GINLKSLYRLNLSGCSRLKSFPD--- 722 (1153)
T ss_pred --cccchhhhccCCCCEEeCCCCCCcCc------c----C------------C-cCCCCCCCEEeCCCCCCcccccc---
Confidence 12345566778888888887653321 1 1 1 12478999999999987765542
Q ss_pred CcccccCCCccEEEEecCcCcccccCC--CCCCccEEEEecccCcc--cc--------CCCCCcccEEEEeccCCCCccc
Q 046764 812 SQEVEVFPNLRDLFLLRCSKLLGTLPK--HLPSLQKLVIQRCEKLL--VD--------LPSLPSLNELKLGGCKKGGLQK 879 (1113)
Q Consensus 812 ~~~~~~~~~L~~L~L~~c~~L~~~lp~--~l~~L~~L~L~~c~~L~--~~--------l~~l~~L~~L~L~~~~~~~~~~ 879 (1113)
..++|+.|+++++ .+. .+|. .+++|++|.+.+|.... .. ....++|+.|++++|+....
T Consensus 723 -----~~~nL~~L~L~~n-~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~-- 793 (1153)
T PLN03210 723 -----ISTNISWLDLDET-AIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE-- 793 (1153)
T ss_pred -----ccCCcCeeecCCC-ccc-cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccc--
Confidence 3578999999998 566 6776 46889999887764211 00 11145677777777654432
Q ss_pred CCCccccccccccCCCCCCcccccccCCCCCcCcccCCCCCCceEEEcccCCCcccccccCCCCCcccCCCCccEEEeec
Q 046764 880 GQPIIGRRIHYGCADTSSSLRVCLQCCNSLTNNARVQLPLSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHILS 959 (1113)
Q Consensus 880 ~~~l~~l~l~~~~~~~l~~L~~L~~~~N~L~~~~~l~~l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~ 959 (1113)
.+..++.+++|+.|+|++|.+++.+ |... ++++|++|++++
T Consensus 794 -------------------------------lP~si~~L~~L~~L~Ls~C~~L~~L-P~~~-------~L~sL~~L~Ls~ 834 (1153)
T PLN03210 794 -------------------------------LPSSIQNLHKLEHLEIENCINLETL-PTGI-------NLESLESLDLSG 834 (1153)
T ss_pred -------------------------------cChhhhCCCCCCEEECCCCCCcCee-CCCC-------CccccCEEECCC
Confidence 3445778999999999999988887 6554 689999999999
Q ss_pred CCCCcccCCCCCcCCccCeEEEcccccccccccc-CCCCCCCeEEEEecCCCccccCCC---CCCccEEEEeecCCCCcc
Q 046764 960 CPSPTSIFSENELPATLQRLEVNSCSKLALLTLS-GNLPQGPKYLELTSCSKWESIADN---NTSLQVITVFRCKNLKTL 1035 (1113)
Q Consensus 960 c~~L~~ll~~~~l~~sL~~L~i~~c~~L~~l~l~-~~lp~~L~~L~L~~c~~L~~lp~~---l~sL~~L~Ls~c~~l~~l 1035 (1113)
|..+.. +|. .+.+|+.|++.+. .++.++.+ .+++. |+.|++++|++++.+|.. +++|+.|++++|..+..+
T Consensus 835 c~~L~~-~p~--~~~nL~~L~Ls~n-~i~~iP~si~~l~~-L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 835 CSRLRT-FPD--ISTNISDLNLSRT-GIEEVPWWIEKFSN-LSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred CCcccc-ccc--cccccCEeECCCC-CCccChHHHhcCCC-CCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 999887 553 3468999998875 44444322 34566 999999999999999876 899999999999988765
Q ss_pred c
Q 046764 1036 P 1036 (1113)
Q Consensus 1036 P 1036 (1113)
+
T Consensus 910 ~ 910 (1153)
T PLN03210 910 S 910 (1153)
T ss_pred c
Confidence 3
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.77 E-value=9.1e-21 Score=211.54 Aligned_cols=361 Identities=22% Similarity=0.221 Sum_probs=221.0
Q ss_pred CCccccEEecCCCCCc--ccChhhhccccccEEecccccccccccccccCCCcceEEEcCCceecccccccccccc-ccc
Q 046764 607 DLKHLRHLDLSETDIQ--ILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNFDFCCWKDIDSALQELK-LLH 683 (1113)
Q Consensus 607 ~L~~Lr~L~Ls~~~i~--~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~~~~i~~~~~~~l~~L~-L~~ 683 (1113)
-|+..|-.|+++|.++ .+|..+..++.++.|.|.. +.+..+|.+++.|.+|+||.+++|.+.+ ....+..|. |+.
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnr-t~L~~vPeEL~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNR-TKLEQVPEELSRLQKLEHLSMAHNQLIS-VHGELSDLPRLRS 82 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEech-hhhhhChHHHHHHhhhhhhhhhhhhhHh-hhhhhccchhhHH
Confidence 3555666777888776 5688888888888888877 6778888888888888888887775432 112222222 222
Q ss_pred cccceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCCCCCcceEEEeccCccccccCc
Q 046764 684 LHGALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGETLRFENM 763 (1113)
Q Consensus 684 L~g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~L~~~~~~~~l~~L 763 (1113)
+. +.-+++.+. .++..+-.+..|..|+|+.|. -.+++..|..-+++-.|+++.+..
T Consensus 83 v~--~R~N~LKns-----GiP~diF~l~dLt~lDLShNq----------L~EvP~~LE~AKn~iVLNLS~N~I------- 138 (1255)
T KOG0444|consen 83 VI--VRDNNLKNS-----GIPTDIFRLKDLTILDLSHNQ----------LREVPTNLEYAKNSIVLNLSYNNI------- 138 (1255)
T ss_pred Hh--hhccccccC-----CCCchhcccccceeeecchhh----------hhhcchhhhhhcCcEEEEcccCcc-------
Confidence 21 111122221 223345667777777777664 223455555555555565554321
Q ss_pred ccccccccCCCcccceEecCCCCCCCCCcceeeccccCcCcccccCCCCcccccCCCccEEEEecCcCcccccCC---CC
Q 046764 764 QEREDWIPYSSSQEVEFYGNGCLIPFPSLETLRFENMQEREDWIPYSSSQEVEVFPNLRDLFLLRCSKLLGTLPK---HL 840 (1113)
Q Consensus 764 ~~L~~~Lpl~~l~~~~~~g~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~lp~---~l 840 (1113)
+.++ ...+.++.-|-.|+|+++ .+. .+|. .+
T Consensus 139 ----------------------------------------etIP----n~lfinLtDLLfLDLS~N-rLe-~LPPQ~RRL 172 (1255)
T KOG0444|consen 139 ----------------------------------------ETIP----NSLFINLTDLLFLDLSNN-RLE-MLPPQIRRL 172 (1255)
T ss_pred ----------------------------------------ccCC----chHHHhhHhHhhhccccc-hhh-hcCHHHHHH
Confidence 1111 001123444556666666 555 5554 45
Q ss_pred CCccEEEEecccCccc---cCCCCCcccEEEEeccCCCCcccCCCccccccccccCCCCCCcccccccCCCCC-cCcccC
Q 046764 841 PSLQKLVIQRCEKLLV---DLPSLPSLNELKLGGCKKGGLQKGQPIIGRRIHYGCADTSSSLRVCLQCCNSLT-NNARVQ 916 (1113)
Q Consensus 841 ~~L~~L~L~~c~~L~~---~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~~l~~L~~L~~~~N~L~-~~~~l~ 916 (1113)
.+|++|++++++..-. .+|.+++|+.|.+++.+.+-.. -+..+..+.+|..++++.|+++ .|..+-
T Consensus 173 ~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N----------~Ptsld~l~NL~dvDlS~N~Lp~vPecly 242 (1255)
T KOG0444|consen 173 SMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDN----------IPTSLDDLHNLRDVDLSENNLPIVPECLY 242 (1255)
T ss_pred hhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhc----------CCCchhhhhhhhhccccccCCCcchHHHh
Confidence 5667777777653322 4455556666666665543211 1235566777777777777888 777788
Q ss_pred CCCCCceEEEcccCCCcccccccCCCCCcccCCCCccEEEeecCCCCcccCCCCCcCCccCeEEEccccccccccccCCC
Q 046764 917 LPLSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHILSCPSPTSIFSENELPATLQRLEVNSCSKLALLTLSGNL 996 (1113)
Q Consensus 917 ~l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~c~~L~~ll~~~~l~~sL~~L~i~~c~~L~~l~l~~~l 996 (1113)
.+++|+.|+++++. ++.+ .... ....+|++|+++.+ .++. +|. -++..++|+
T Consensus 243 ~l~~LrrLNLS~N~-iteL-~~~~------~~W~~lEtLNlSrN-QLt~-LP~----------avcKL~kL~-------- 294 (1255)
T KOG0444|consen 243 KLRNLRRLNLSGNK-ITEL-NMTE------GEWENLETLNLSRN-QLTV-LPD----------AVCKLTKLT-------- 294 (1255)
T ss_pred hhhhhheeccCcCc-eeee-eccH------HHHhhhhhhccccc-hhcc-chH----------HHhhhHHHH--------
Confidence 88888888888876 5554 2111 13456777777663 3333 221 111222222
Q ss_pred CCCCeEEEEecCC-CccccCCC---CCCccEEEEeecCCCCcccccCCCCCCcCeeee-ccccccccCCCCCCCCcCcEE
Q 046764 997 PQGPKYLELTSCS-KWESIADN---NTSLQVITVFRCKNLKTLPDGLHKLNNLQAFTI-CKNLVSFPKGGLPSTQLRDPD 1071 (1113)
Q Consensus 997 p~~L~~L~L~~c~-~L~~lp~~---l~sL~~L~Ls~c~~l~~lP~~l~~L~sL~~L~L-cn~L~slp~~~~~~~sL~~L~ 1071 (1113)
.|++.++. .++-+|.+ +.+|+.+...+ +.++-+|++++.+..|+.|.| ||.+.++|+...-++.|+.|+
T Consensus 295 -----kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLD 368 (1255)
T KOG0444|consen 295 -----KLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLD 368 (1255)
T ss_pred -----HHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceee
Confidence 22222211 23345555 68888888887 578999999999999999999 999999999888888999999
Q ss_pred EeCCCCCccCCC
Q 046764 1072 ITGCQKLEALPD 1083 (1113)
Q Consensus 1072 l~~C~~L~~l~~ 1083 (1113)
++.+|+|.-.|.
T Consensus 369 lreNpnLVMPPK 380 (1255)
T KOG0444|consen 369 LRENPNLVMPPK 380 (1255)
T ss_pred ccCCcCccCCCC
Confidence 999999987665
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.76 E-value=1.6e-19 Score=201.17 Aligned_cols=350 Identities=21% Similarity=0.221 Sum_probs=180.4
Q ss_pred ccEEecCCCCCccc-ChhhhccccccEEecccccccccccccccCCCcceEEEcCCceecccccccccccccccccccee
Q 046764 611 LRHLDLSETDIQIL-PESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNFDFCCWKDIDSALQELKLLHLHGALE 689 (1113)
Q Consensus 611 Lr~L~Ls~~~i~~L-P~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~~~~i~~~~~~~l~~L~L~~L~g~L~ 689 (1113)
-+.||+++|.+..+ +..|.+|++|+.+++.. +.+..+|...+...+|++|+|.+|.+......
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~-N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se--------------- 143 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNK-NELTRIPRFGHESGHLEKLDLRHNLISSVTSE--------------- 143 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeecc-chhhhcccccccccceeEEeeeccccccccHH---------------
Confidence 46699999999987 78899999999999998 68999999888888899999998866433222
Q ss_pred eccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCCCCCcceEEEeccCccccccCccccccc
Q 046764 690 ISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGETLRFENMQEREDW 769 (1113)
Q Consensus 690 i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~L~~~~~~~~l~~L~~L~~~ 769 (1113)
.+..++.|++|+|+.|..... ....+....++++|++.++..+. +
T Consensus 144 ----------------~L~~l~alrslDLSrN~is~i---------~~~sfp~~~ni~~L~La~N~It~-------l--- 188 (873)
T KOG4194|consen 144 ----------------ELSALPALRSLDLSRNLISEI---------PKPSFPAKVNIKKLNLASNRITT-------L--- 188 (873)
T ss_pred ----------------HHHhHhhhhhhhhhhchhhcc---------cCCCCCCCCCceEEeeccccccc-------c---
Confidence 234445556666655531110 11222233456666655543211 0
Q ss_pred ccCCCcccceEecCCCCCCCCCcceeeccccCcCcccccCCCCcccccCCCccEEEEecCcCccccc----CCCCCCccE
Q 046764 770 IPYSSSQEVEFYGNGCLIPFPSLETLRFENMQEREDWIPYSSSQEVEVFPNLRDLFLLRCSKLLGTL----PKHLPSLQK 845 (1113)
Q Consensus 770 Lpl~~l~~~~~~g~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~l----p~~l~~L~~ 845 (1113)
+...+..|.+|..|+|++.. +...+ ...+..+|+|+.|+|..+ .++ .+ -..+++|+.
T Consensus 189 ------------~~~~F~~lnsL~tlkLsrNr-ittLp----~r~Fk~L~~L~~LdLnrN-~ir-ive~ltFqgL~Sl~n 249 (873)
T KOG4194|consen 189 ------------ETGHFDSLNSLLTLKLSRNR-ITTLP----QRSFKRLPKLESLDLNRN-RIR-IVEGLTFQGLPSLQN 249 (873)
T ss_pred ------------ccccccccchheeeecccCc-ccccC----HHHhhhcchhhhhhcccc-cee-eehhhhhcCchhhhh
Confidence 00223334455555555421 11111 122334556666666555 333 11 124445555
Q ss_pred EEEeccc--Cccc-cCCCCCcccEEEEeccCCCCcccCCCccccccccccCCCCCCcccccccCCCCC--cCcccCCCCC
Q 046764 846 LVIQRCE--KLLV-DLPSLPSLNELKLGGCKKGGLQKGQPIIGRRIHYGCADTSSSLRVCLQCCNSLT--NNARVQLPLS 920 (1113)
Q Consensus 846 L~L~~c~--~L~~-~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~~l~~L~~L~~~~N~L~--~~~~l~~l~~ 920 (1113)
|.+..|. .+.. .+-.+.++++|+|..|.... +..+++.++++|+.|+++.|.+. .++.....++
T Consensus 250 lklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~-----------vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftqk 318 (873)
T KOG4194|consen 250 LKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA-----------VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQK 318 (873)
T ss_pred hhhhhcCcccccCcceeeecccceeecccchhhh-----------hhcccccccchhhhhccchhhhheeecchhhhccc
Confidence 5554442 2221 12224455555555554443 22345555555555555555554 3344444555
Q ss_pred CceEEEcccCCCcccccccCCCCCcccCCCCccEEEeecCCCCcccCCCCCcCCccCeEEEccccccccccccCCCCCCC
Q 046764 921 LKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHILSCPSPTSIFSENELPATLQRLEVNSCSKLALLTLSGNLPQGP 1000 (1113)
Q Consensus 921 L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~c~~L~~ll~~~~l~~sL~~L~i~~c~~L~~l~l~~~lp~~L 1000 (1113)
|+.|+++++. ++.+ +++. +. .+..|++|.++.+ ++.. +..+ .+.+.++ |
T Consensus 319 L~~LdLs~N~-i~~l-~~~s----f~-~L~~Le~LnLs~N-si~~-l~e~---------af~~lss-------------L 367 (873)
T KOG4194|consen 319 LKELDLSSNR-ITRL-DEGS----FR-VLSQLEELNLSHN-SIDH-LAEG---------AFVGLSS-------------L 367 (873)
T ss_pred ceeEeccccc-cccC-ChhH----HH-HHHHhhhhccccc-chHH-HHhh---------HHHHhhh-------------h
Confidence 5555555543 4444 3222 21 4445555554432 1111 1111 1111122 3
Q ss_pred eEEEEecCCC---c--cccC-CCCCCccEEEEeecCCCCcccc-cCCCCCCcCeeee-ccccccccCCCCCCCCcCcEEE
Q 046764 1001 KYLELTSCSK---W--ESIA-DNNTSLQVITVFRCKNLKTLPD-GLHKLNNLQAFTI-CKNLVSFPKGGLPSTQLRDPDI 1072 (1113)
Q Consensus 1001 ~~L~L~~c~~---L--~~lp-~~l~sL~~L~Ls~c~~l~~lP~-~l~~L~sL~~L~L-cn~L~slp~~~~~~~sL~~L~l 1072 (1113)
+.|+++++.- + .+.+ .++++|+.|++.+| +++++|. .+.+|.+|+.|+| .|-+.++....+....|++|.+
T Consensus 368 ~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~ 446 (873)
T KOG4194|consen 368 HKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVM 446 (873)
T ss_pred hhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhh
Confidence 3333332110 0 1111 11677777777774 5777754 5677777777777 7777776655553236666665
Q ss_pred e
Q 046764 1073 T 1073 (1113)
Q Consensus 1073 ~ 1073 (1113)
.
T Consensus 447 n 447 (873)
T KOG4194|consen 447 N 447 (873)
T ss_pred c
Confidence 4
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.76 E-value=1.6e-20 Score=220.33 Aligned_cols=421 Identities=22% Similarity=0.185 Sum_probs=238.9
Q ss_pred CCCeeEEccCCcC------CCCCCccccEEecCCCCCcccChhhhccccccEEecccccccccccccccCCCcceEEEcC
Q 046764 591 FENLQTFLPTTVS------HGGDLKHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNF 664 (1113)
Q Consensus 591 l~~Lr~L~~~~~~------~i~~L~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~ 664 (1113)
.-+|++|.+.++. .+..+.+|+.|+++.|.|.+.|.+++++++|++|+|.+ +.+..+|.++..+++|++|+++
T Consensus 44 ~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN-NRLQSLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheecc-chhhcCchhHHhhhcccccccc
Confidence 3447777776654 56677888888888888888888888888888888885 6778888888888888888888
Q ss_pred Cceecccccccccccc-ccccccceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCCC
Q 046764 665 DFCCWKDIDSALQELK-LLHLHGALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKPH 743 (1113)
Q Consensus 665 ~~~i~~~~~~~l~~L~-L~~L~g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~ 743 (1113)
.|.+ ...|..+..+. +..+.. .+.. ....++... ++.+++..+.. ...++..+..+
T Consensus 123 ~N~f-~~~Pl~i~~lt~~~~~~~-------s~N~-----~~~~lg~~~-ik~~~l~~n~l---------~~~~~~~i~~l 179 (1081)
T KOG0618|consen 123 FNHF-GPIPLVIEVLTAEEELAA-------SNNE-----KIQRLGQTS-IKKLDLRLNVL---------GGSFLIDIYNL 179 (1081)
T ss_pred hhcc-CCCchhHHhhhHHHHHhh-------hcch-----hhhhhcccc-chhhhhhhhhc---------ccchhcchhhh
Confidence 7765 34455555555 332220 0000 000111111 44444433321 01112222222
Q ss_pred CCcceEEEeccCccccccCcccccccccCCCcccceEecCCCCCCCCCcceeeccccCcCcccccCCCCcccccCCCccE
Q 046764 744 QNLERFCISGYGETLRFENMQEREDWIPYSSSQEVEFYGNGCLIPFPSLETLRFENMQEREDWIPYSSSQEVEVFPNLRD 823 (1113)
Q Consensus 744 ~~L~~L~L~~~~~~~~l~~L~~L~~~Lpl~~l~~~~~~g~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~ 823 (1113)
.+ .|+++.+.... ..+..+++|+.|...... +..+. -.-++|+.
T Consensus 180 ~~--~ldLr~N~~~~-------------------------~dls~~~~l~~l~c~rn~-ls~l~--------~~g~~l~~ 223 (1081)
T KOG0618|consen 180 TH--QLDLRYNEMEV-------------------------LDLSNLANLEVLHCERNQ-LSELE--------ISGPSLTA 223 (1081)
T ss_pred he--eeecccchhhh-------------------------hhhhhccchhhhhhhhcc-cceEE--------ecCcchhe
Confidence 22 24444322110 112234444444443221 11111 13467777
Q ss_pred EEEecCcCcccccCC-CCCCccEEEEecc--cCccccCCCCCcccEEEEeccCCCCcccCCCccccccccccCCCCCCcc
Q 046764 824 LFLLRCSKLLGTLPK-HLPSLQKLVIQRC--EKLLVDLPSLPSLNELKLGGCKKGGLQKGQPIIGRRIHYGCADTSSSLR 900 (1113)
Q Consensus 824 L~L~~c~~L~~~lp~-~l~~L~~L~L~~c--~~L~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~~l~~L~ 900 (1113)
|+.++|+-.+ ..+. ...+|+.++++++ ..++..+..+++|+.+.+.+|.....+ ..+....+|+
T Consensus 224 L~a~~n~l~~-~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp------------~ri~~~~~L~ 290 (1081)
T KOG0618|consen 224 LYADHNPLTT-LDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALP------------LRISRITSLV 290 (1081)
T ss_pred eeeccCccee-eccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhH------------HHHhhhhhHH
Confidence 7777775433 3332 3346777777766 355555556777777777777664322 2344556666
Q ss_pred cccccCCCCC-cCcccCCCCCCceEEEcccCCCcccccccCCCCCcccCCC-CccEEEeecCCCCccc--CCCCCcCCcc
Q 046764 901 VCLQCCNSLT-NNARVQLPLSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSS-HLECLHILSCPSPTSI--FSENELPATL 976 (1113)
Q Consensus 901 ~L~~~~N~L~-~~~~l~~l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~-~L~~L~L~~c~~L~~l--l~~~~l~~sL 976 (1113)
.|....|.+. .+.....+.+|+.|++..+. |.++ |... ...+. +|..|+.+. ..+... ...... ..|
T Consensus 291 ~l~~~~nel~yip~~le~~~sL~tLdL~~N~-L~~l-p~~~-----l~v~~~~l~~ln~s~-n~l~~lp~~~e~~~-~~L 361 (1081)
T KOG0618|consen 291 SLSAAYNELEYIPPFLEGLKSLRTLDLQSNN-LPSL-PDNF-----LAVLNASLNTLNVSS-NKLSTLPSYEENNH-AAL 361 (1081)
T ss_pred HHHhhhhhhhhCCCcccccceeeeeeehhcc-cccc-chHH-----HhhhhHHHHHHhhhh-ccccccccccchhh-HHH
Confidence 6666666666 55555567777777776664 5444 3311 10111 133333322 111110 011111 133
Q ss_pred CeEEEcccccccc--ccccCCCCCCCeEEEEecCCCccccCCC----CCCccEEEEeecCCCCcccccCCCCCCcCeeee
Q 046764 977 QRLEVNSCSKLAL--LTLSGNLPQGPKYLELTSCSKWESIADN----NTSLQVITVFRCKNLKTLPDGLHKLNNLQAFTI 1050 (1113)
Q Consensus 977 ~~L~i~~c~~L~~--l~l~~~lp~~L~~L~L~~c~~L~~lp~~----l~sL~~L~Ls~c~~l~~lP~~l~~L~sL~~L~L 1050 (1113)
+.|.+.+.. |.. +..-.+++. |+.|+++. +.+.++|.. +..|++|++||| .++.+|..+..+..|++|..
T Consensus 362 q~LylanN~-Ltd~c~p~l~~~~h-LKVLhLsy-NrL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 362 QELYLANNH-LTDSCFPVLVNFKH-LKVLHLSY-NRLNSFPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRA 437 (1081)
T ss_pred HHHHHhcCc-ccccchhhhccccc-eeeeeecc-cccccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhh
Confidence 333332210 110 111123444 99999988 588888887 888899999995 68999999999999999988
Q ss_pred -ccccccccCCCCCCCCcCcEEEeCCCCCccCCC-CCCC-CCcCcccccccc
Q 046764 1051 -CKNLVSFPKGGLPSTQLRDPDITGCQKLEALPD-GDLS-STFKTGKSSKCG 1099 (1113)
Q Consensus 1051 -cn~L~slp~~~~~~~sL~~L~l~~C~~L~~l~~-~~l~-~sL~~L~~~~c~ 1099 (1113)
.|++.++| +...++.|+.+|++ |+.|+.+.. ..+| ..|++|+++|-.
T Consensus 438 hsN~l~~fP-e~~~l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 438 HSNQLLSFP-ELAQLPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred cCCceeech-hhhhcCcceEEecc-cchhhhhhhhhhCCCcccceeeccCCc
Confidence 88888998 55566789999994 788776653 4556 678888888764
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.73 E-value=9.7e-20 Score=213.76 Aligned_cols=402 Identities=21% Similarity=0.257 Sum_probs=219.9
Q ss_pred ccCCCCCeeEEccCCcC------CCCCCccccEEecCCCCCcccChhhhccccccEEecccccccccccccccCCCcceE
Q 046764 587 PFFEFENLQTFLPTTVS------HGGDLKHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHH 660 (1113)
Q Consensus 587 ~~~~l~~Lr~L~~~~~~------~i~~L~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~ 660 (1113)
.+..+.+|+.|.+..+. +.+++++|++|+|.+|.+..+|.++..+++|++||+++ +.....|..+..++.+..
T Consensus 63 ~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~-N~f~~~Pl~i~~lt~~~~ 141 (1081)
T KOG0618|consen 63 QITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSF-NHFGPIPLVIEVLTAEEE 141 (1081)
T ss_pred hhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccch-hccCCCchhHHhhhHHHH
Confidence 44566777777766654 78899999999999999999999999999999999999 578889999999999999
Q ss_pred EEcCCceeccccc-cccccccccccccceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhcc
Q 046764 661 LDNFDFCCWKDID-SALQELKLLHLHGALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDM 739 (1113)
Q Consensus 661 L~L~~~~i~~~~~-~~l~~L~L~~L~g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~ 739 (1113)
+..++|......+ ..+..+. |+ .+.+.. .+...+..+++ .|+|+.|... . ........++.
T Consensus 142 ~~~s~N~~~~~lg~~~ik~~~---l~----~n~l~~------~~~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~ 203 (1081)
T KOG0618|consen 142 LAASNNEKIQRLGQTSIKKLD---LR----LNVLGG------SFLIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEV 203 (1081)
T ss_pred Hhhhcchhhhhhccccchhhh---hh----hhhccc------chhcchhhhhe--eeecccchhh-h--hhhhhccchhh
Confidence 9999882111111 1122221 11 111111 11112233333 4666655411 0 00000000011
Q ss_pred CC-CCCCcceEEEeccCccccccCccccc-ccccCCCcccceEecCCCCCCCCCcceeeccc--cCcCcccccCCCCccc
Q 046764 740 LK-PHQNLERFCISGYGETLRFENMQERE-DWIPYSSSQEVEFYGNGCLIPFPSLETLRFEN--MQEREDWIPYSSSQEV 815 (1113)
Q Consensus 740 L~-~~~~L~~L~L~~~~~~~~l~~L~~L~-~~Lpl~~l~~~~~~g~~~l~~~~~L~~L~L~~--~~~l~~~~~~~~~~~~ 815 (1113)
+. ....|..+.+.+. +++.|. ...|+..+ .......+|++++++. ..++.+|.
T Consensus 204 l~c~rn~ls~l~~~g~-------~l~~L~a~~n~l~~~--------~~~p~p~nl~~~dis~n~l~~lp~wi-------- 260 (1081)
T KOG0618|consen 204 LHCERNQLSELEISGP-------SLTALYADHNPLTTL--------DVHPVPLNLQYLDISHNNLSNLPEWI-------- 260 (1081)
T ss_pred hhhhhcccceEEecCc-------chheeeeccCcceee--------ccccccccceeeecchhhhhcchHHH--------
Confidence 10 0122333444332 222222 11111100 1112245778888773 35556666
Q ss_pred ccCCCccEEEEecCcCcccccCC---CCCCccEEEEeccc--CccccCCCCCcccEEEEeccCCCCcccCCCcccccccc
Q 046764 816 EVFPNLRDLFLLRCSKLLGTLPK---HLPSLQKLVIQRCE--KLLVDLPSLPSLNELKLGGCKKGGLQKGQPIIGRRIHY 890 (1113)
Q Consensus 816 ~~~~~L~~L~L~~c~~L~~~lp~---~l~~L~~L~L~~c~--~L~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~ 890 (1113)
+.+++|+.|.+.++ .+. .+|. ...+|+.|.+..|. .++.....+.+|+.|+|..|.....+.
T Consensus 261 ~~~~nle~l~~n~N-~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~----------- 327 (1081)
T KOG0618|consen 261 GACANLEALNANHN-RLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPD----------- 327 (1081)
T ss_pred HhcccceEecccch-hHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccch-----------
Confidence 47888888888887 565 6664 45677777777663 344344457888888888887765432
Q ss_pred ccCCCCC-CcccccccCCCCC--cCcccCCCCCCceEEEcccCCCcccccccCCCCCcccCCCCccEEEeecCCCCcccC
Q 046764 891 GCADTSS-SLRVCLQCCNSLT--NNARVQLPLSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHILSCPSPTSIF 967 (1113)
Q Consensus 891 ~~~~~l~-~L~~L~~~~N~L~--~~~~l~~l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~c~~L~~ll 967 (1113)
..+.... +|+.|..+.|.+. +..+-..++.|+.|.+.+|. |++- .+|. + .++.+|+.|+++++ .+.+ |
T Consensus 328 ~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~-Ltd~----c~p~-l-~~~~hLKVLhLsyN-rL~~-f 398 (1081)
T KOG0618|consen 328 NFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNH-LTDS----CFPV-L-VNFKHLKVLHLSYN-RLNS-F 398 (1081)
T ss_pred HHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCc-cccc----chhh-h-ccccceeeeeeccc-cccc-C
Confidence 1111111 1333433333444 11222334556666666554 2221 1221 1 25566666666553 2332 2
Q ss_pred CCCCcCCccCeEEEccccccccccccCCCCCCCeEEEEecCCCccccCCC---CCCccEEEEeecCCCCcccccCCCCCC
Q 046764 968 SENELPATLQRLEVNSCSKLALLTLSGNLPQGPKYLELTSCSKWESIADN---NTSLQVITVFRCKNLKTLPDGLHKLNN 1044 (1113)
Q Consensus 968 ~~~~l~~sL~~L~i~~c~~L~~l~l~~~lp~~L~~L~L~~c~~L~~lp~~---l~sL~~L~Ls~c~~l~~lP~~l~~L~s 1044 (1113)
|...+. +++. |+.|++++ ++|+.+|.. ++.|++|...+| .+..+| .+..++.
T Consensus 399 pas~~~---------------------kle~-LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahsN-~l~~fP-e~~~l~q 453 (1081)
T KOG0618|consen 399 PASKLR---------------------KLEE-LEELNLSG-NKLTTLPDTVANLGRLHTLRAHSN-QLLSFP-ELAQLPQ 453 (1081)
T ss_pred CHHHHh---------------------chHH-hHHHhccc-chhhhhhHHHHhhhhhHHHhhcCC-ceeech-hhhhcCc
Confidence 222111 1222 55555665 466666655 677777766653 566667 6677777
Q ss_pred cCeeee-ccccccccC-CCCCCCCcCcEEEeCCCC
Q 046764 1045 LQAFTI-CKNLVSFPK-GGLPSTQLRDPDITGCQK 1077 (1113)
Q Consensus 1045 L~~L~L-cn~L~slp~-~~~~~~sL~~L~l~~C~~ 1077 (1113)
|+.+|+ ||+|+.+-- ...|.|+|++|+++|+..
T Consensus 454 L~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 454 LKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred ceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 777777 777764211 123435777777777664
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.72 E-value=1.6e-18 Score=193.31 Aligned_cols=371 Identities=17% Similarity=0.176 Sum_probs=247.7
Q ss_pred cEEecCCCCCcccC-hhhhccc--cccEEecccccccccccccccCCCcceEEEcCCceeccccccccccccccccccce
Q 046764 612 RHLDLSETDIQILP-ESVNTLY--NLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNFDFCCWKDIDSALQELKLLHLHGAL 688 (1113)
Q Consensus 612 r~L~Ls~~~i~~LP-~~i~~L~--~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~~~~i~~~~~~~l~~L~L~~L~g~L 688 (1113)
+.||.++..+..+. +.+...- .-++||+++|..-..-+..|.+|++|+.+++..|.+. ..|.
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~-------------- 119 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPR-------------- 119 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccc--------------
Confidence 45677777666541 1122222 3456999985433344567789999999998877432 1121
Q ss_pred eeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCCCCCcceEEEeccCccccccCcccccc
Q 046764 689 EISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGETLRFENMQERED 768 (1113)
Q Consensus 689 ~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~L~~~~~~~~l~~L~~L~~ 768 (1113)
......+|+.|+|..|.... ..-+.|+.++-|+.|+++.+.... +.
T Consensus 120 -----------------f~~~sghl~~L~L~~N~I~s---------v~se~L~~l~alrslDLSrN~is~-------i~- 165 (873)
T KOG4194|consen 120 -----------------FGHESGHLEKLDLRHNLISS---------VTSEELSALPALRSLDLSRNLISE-------IP- 165 (873)
T ss_pred -----------------ccccccceeEEeeecccccc---------ccHHHHHhHhhhhhhhhhhchhhc-------cc-
Confidence 12233467888887665211 122445667788999998753221 11
Q ss_pred cccCCCcccceEecCCCCCCCCCcceeeccccCcCcccccCCCCcccccCCCccEEEEecCcCcccccCC----CCCCcc
Q 046764 769 WIPYSSSQEVEFYGNGCLIPFPSLETLRFENMQEREDWIPYSSSQEVEVFPNLRDLFLLRCSKLLGTLPK----HLPSLQ 844 (1113)
Q Consensus 769 ~Lpl~~l~~~~~~g~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~lp~----~l~~L~ 844 (1113)
.+++..=+++++|+|++... .... ...+..+.+|..|.|+++ .++ .+|. .+|+|+
T Consensus 166 --------------~~sfp~~~ni~~L~La~N~I-t~l~----~~~F~~lnsL~tlkLsrN-rit-tLp~r~Fk~L~~L~ 224 (873)
T KOG4194|consen 166 --------------KPSFPAKVNIKKLNLASNRI-TTLE----TGHFDSLNSLLTLKLSRN-RIT-TLPQRSFKRLPKLE 224 (873)
T ss_pred --------------CCCCCCCCCceEEeeccccc-cccc----cccccccchheeeecccC-ccc-ccCHHHhhhcchhh
Confidence 02333445799999987532 2222 335567889999999998 676 7774 588999
Q ss_pred EEEEecccC-cc--ccCCCCCcccEEEEeccCCCCcccCCCccccccccccCCCCCCcccccccCCCCC--cCcccCCCC
Q 046764 845 KLVIQRCEK-LL--VDLPSLPSLNELKLGGCKKGGLQKGQPIIGRRIHYGCADTSSSLRVCLQCCNSLT--NNARVQLPL 919 (1113)
Q Consensus 845 ~L~L~~c~~-L~--~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~~l~~L~~L~~~~N~L~--~~~~l~~l~ 919 (1113)
.|++..|.. +. ..+..+++|+.|.+..|.... +..+.|-.+.++++|.+..|++. ...++.+++
T Consensus 225 ~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~k-----------L~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt 293 (873)
T KOG4194|consen 225 SLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISK-----------LDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLT 293 (873)
T ss_pred hhhccccceeeehhhhhcCchhhhhhhhhhcCccc-----------ccCcceeeecccceeecccchhhhhhcccccccc
Confidence 999988742 22 146679999999999998877 34578999999999999998998 677788999
Q ss_pred CCceEEEcccCCCcccccccCCCCCcccCCCCccEEEeecCCCCcccCCCCCcCCccCeEEEccccccccccccCCCCCC
Q 046764 920 SLKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHILSCPSPTSIFSENELPATLQRLEVNSCSKLALLTLSGNLPQG 999 (1113)
Q Consensus 920 ~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~c~~L~~ll~~~~l~~sL~~L~i~~c~~L~~l~l~~~lp~~ 999 (1113)
+|+.|+++++. +..+ -+..|. ..++|++|+++++ .++. ++...+- ....
T Consensus 294 ~L~~L~lS~Na-I~ri-----h~d~Ws-ftqkL~~LdLs~N-~i~~-l~~~sf~---------~L~~------------- 342 (873)
T KOG4194|consen 294 SLEQLDLSYNA-IQRI-----HIDSWS-FTQKLKELDLSSN-RITR-LDEGSFR---------VLSQ------------- 342 (873)
T ss_pred hhhhhccchhh-hhee-----ecchhh-hcccceeEecccc-cccc-CChhHHH---------HHHH-------------
Confidence 99999999986 5555 233343 6788999998763 3333 2222111 1111
Q ss_pred CeEEEEecCCCccccCCC----CCCccEEEEeecCCCCcc---cccCCCCCCcCeeee-ccccccccCCCC-CCCCcCcE
Q 046764 1000 PKYLELTSCSKWESIADN----NTSLQVITVFRCKNLKTL---PDGLHKLNNLQAFTI-CKNLVSFPKGGL-PSTQLRDP 1070 (1113)
Q Consensus 1000 L~~L~L~~c~~L~~lp~~----l~sL~~L~Ls~c~~l~~l---P~~l~~L~sL~~L~L-cn~L~slp~~~~-~~~sL~~L 1070 (1113)
|++|.+++ +.+.++.++ +++|++|++++|.....+ ...+.+|++|+.|.+ .|+++++|...+ .+++|++|
T Consensus 343 Le~LnLs~-Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~L 421 (873)
T KOG4194|consen 343 LEELNLSH-NSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHL 421 (873)
T ss_pred hhhhcccc-cchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCccccee
Confidence 66666666 467777666 899999999997654444 335678999999999 999999998554 56699999
Q ss_pred EEeCCCCCccCCCCCCC-CCcCccccc
Q 046764 1071 DITGCQKLEALPDGDLS-STFKTGKSS 1096 (1113)
Q Consensus 1071 ~l~~C~~L~~l~~~~l~-~sL~~L~~~ 1096 (1113)
++.+ +.+.++-.+.+. -.|++|.+.
T Consensus 422 dL~~-NaiaSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 422 DLGD-NAIASIQPNAFEPMELKELVMN 447 (873)
T ss_pred cCCC-Ccceeecccccccchhhhhhhc
Confidence 9976 666666654332 245555443
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.67 E-value=1.6e-19 Score=193.40 Aligned_cols=407 Identities=20% Similarity=0.237 Sum_probs=203.7
Q ss_pred CCCCCccccEEecCCCCCcccChhhhccccccEEecccccccccccccccCCCcceEEEcCCceecccccccccccc-cc
Q 046764 604 HGGDLKHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNFDFCCWKDIDSALQELK-LL 682 (1113)
Q Consensus 604 ~i~~L~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~~~~i~~~~~~~l~~L~-L~ 682 (1113)
.+.++..|.+|++++|++.++|.+|+.+..++.|+.++ +++.++|..++.+.+|++|+.+.|.. ...+..++.+- +.
T Consensus 63 dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~-n~ls~lp~~i~s~~~l~~l~~s~n~~-~el~~~i~~~~~l~ 140 (565)
T KOG0472|consen 63 DLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSH-NKLSELPEQIGSLISLVKLDCSSNEL-KELPDSIGRLLDLE 140 (565)
T ss_pred hhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhccc-chHhhccHHHhhhhhhhhhhccccce-eecCchHHHHhhhh
Confidence 34445555555555555555555555555555555555 34555555555555555555555433 22333343333 33
Q ss_pred ccccceeeccccCcc----------------ChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCCCCCc
Q 046764 683 HLHGALEISKLENVR----------------DASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKPHQNL 746 (1113)
Q Consensus 683 ~L~g~L~i~~l~~~~----------------~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L 746 (1113)
.+.+. -+++..+. +...+.+...-.++.|++|+...| .-...++.++.+..|
T Consensus 141 dl~~~--~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N----------~L~tlP~~lg~l~~L 208 (565)
T KOG0472|consen 141 DLDAT--NNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN----------LLETLPPELGGLESL 208 (565)
T ss_pred hhhcc--ccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh----------hhhcCChhhcchhhh
Confidence 33210 00000000 000011111222555555554222 122344555556666
Q ss_pred ceEEEeccCccccccCcccccccccCCCcccceEecCCCCCCCCCcceeeccccCcCcccccCCCCcccccCCCccEEEE
Q 046764 747 ERFCISGYGETLRFENMQEREDWIPYSSSQEVEFYGNGCLIPFPSLETLRFENMQEREDWIPYSSSQEVEVFPNLRDLFL 826 (1113)
Q Consensus 747 ~~L~L~~~~~~~~l~~L~~L~~~Lpl~~l~~~~~~g~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L 826 (1113)
..|++..+.... + +.++.+..|++|.+.... ++... ......+++|..|++
T Consensus 209 ~~LyL~~Nki~~-------l-----------------Pef~gcs~L~Elh~g~N~-i~~lp----ae~~~~L~~l~vLDL 259 (565)
T KOG0472|consen 209 ELLYLRRNKIRF-------L-----------------PEFPGCSLLKELHVGENQ-IEMLP----AEHLKHLNSLLVLDL 259 (565)
T ss_pred HHHHhhhccccc-------C-----------------CCCCccHHHHHHHhcccH-HHhhH----HHHhcccccceeeec
Confidence 666665532111 0 234445556666655321 11111 122347888899999
Q ss_pred ecCcCcccccCC---CCCCccEEEEecc--cCccccCCCCCcccEEEEeccCCCCcccCCCccccccccccCCCCCCccc
Q 046764 827 LRCSKLLGTLPK---HLPSLQKLVIQRC--EKLLVDLPSLPSLNELKLGGCKKGGLQKGQPIIGRRIHYGCADTSSSLRV 901 (1113)
Q Consensus 827 ~~c~~L~~~lp~---~l~~L~~L~L~~c--~~L~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~~l~~L~~ 901 (1113)
.++ +++ .+|+ -+.+|++|+++++ ..++..++++ +|+.|.+.+|+..+.... -+..+ .-.-|++
T Consensus 260 RdN-klk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~------ii~~g---T~~vLKy 327 (565)
T KOG0472|consen 260 RDN-KLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRRE------IISKG---TQEVLKY 327 (565)
T ss_pred ccc-ccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHH------HHccc---HHHHHHH
Confidence 888 787 7886 4567888999888 4667777778 888899998886543210 00000 0001122
Q ss_pred c---cccCCCCC---------------cCcccCCCCCCceEEEcccCCCcccccccCCCCCcccCCCCccEEEeecCCCC
Q 046764 902 C---LQCCNSLT---------------NNARVQLPLSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHILSCPSP 963 (1113)
Q Consensus 902 L---~~~~N~L~---------------~~~~l~~l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~c~~L 963 (1113)
| .-|. .+. .........+.+.|++++-. ++.+ |.+.|... .-.-....+++.+. +
T Consensus 328 Lrs~~~~d-glS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~q-lt~V-PdEVfea~---~~~~Vt~VnfskNq-L 400 (565)
T KOG0472|consen 328 LRSKIKDD-GLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQ-LTLV-PDEVFEAA---KSEIVTSVNFSKNQ-L 400 (565)
T ss_pred HHHhhccC-CCCCCcccccccCCCCCCcccchhhhhhhhhhcccccc-cccC-CHHHHHHh---hhcceEEEecccch-H
Confidence 2 0000 000 11122234455666665533 4444 44332110 00112233333211 1
Q ss_pred cccCCC---------------CCcCCccCeEEEccccccccccccCCC----CC------CCeEEEEecCCCccccCCC-
Q 046764 964 TSIFSE---------------NELPATLQRLEVNSCSKLALLTLSGNL----PQ------GPKYLELTSCSKWESIADN- 1017 (1113)
Q Consensus 964 ~~ll~~---------------~~l~~sL~~L~i~~c~~L~~l~l~~~l----p~------~L~~L~L~~c~~L~~lp~~- 1017 (1113)
.. +|. +... +...+.++..++|+.+++++|+ |. .|+.|+++.+ .+..+|..
T Consensus 401 ~e-lPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~ 477 (565)
T KOG0472|consen 401 CE-LPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFN-RFRMLPECL 477 (565)
T ss_pred hh-hhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheeccccc-ccccchHHH
Confidence 11 110 0000 0011122333344444444332 21 1888888874 77777777
Q ss_pred --CCCccEEEEeecCCCCcccc-cCCCCCCcCeeee-ccccccccCCCCCCCCcCcEEEeCCC
Q 046764 1018 --NTSLQVITVFRCKNLKTLPD-GLHKLNNLQAFTI-CKNLVSFPKGGLPSTQLRDPDITGCQ 1076 (1113)
Q Consensus 1018 --l~sL~~L~Ls~c~~l~~lP~-~l~~L~sL~~L~L-cn~L~slp~~~~~~~sL~~L~l~~C~ 1076 (1113)
+..|+.+-. ++++++.++. ++.++.+|.+|++ .|.+.++|.....+++|++|+++|.|
T Consensus 478 y~lq~lEtlla-s~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 478 YELQTLETLLA-SNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred hhHHHHHHHHh-ccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCc
Confidence 444444444 4467888854 5999999999999 99999999998899999999999955
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.67 E-value=7.5e-19 Score=196.40 Aligned_cols=351 Identities=20% Similarity=0.213 Sum_probs=214.7
Q ss_pred CCCCeeEEccCCcC--------CCCCCccccEEecCCCCCcccChhhhccccccEEecccccccccccccccCCCcceEE
Q 046764 590 EFENLQTFLPTTVS--------HGGDLKHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHL 661 (1113)
Q Consensus 590 ~l~~Lr~L~~~~~~--------~i~~L~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L 661 (1113)
-++-+|...+++++ +...|+.++.|.|..+++..+|+.++.|.+|++|.+++ +.+..+-.+++.|+.||.+
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~H-N~L~~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAH-NQLISVHGELSDLPRLRSV 83 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhh-hhhHhhhhhhccchhhHHH
Confidence 35566777776665 45678999999999999999999999999999999999 5677788889999999999
Q ss_pred EcCCceecc-cccccccccc-ccccccceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhcc
Q 046764 662 DNFDFCCWK-DIDSALQELK-LLHLHGALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDM 739 (1113)
Q Consensus 662 ~L~~~~i~~-~~~~~l~~L~-L~~L~g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~ 739 (1113)
++.+|.+.. ..|..|-.|. |..|. ++-+.+..+ +..+..-+++-.|+|++|++.. ++..
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lD--LShNqL~Ev-------P~~LE~AKn~iVLNLS~N~Iet----------IPn~ 144 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILD--LSHNQLREV-------PTNLEYAKNSIVLNLSYNNIET----------IPNS 144 (1255)
T ss_pred hhhccccccCCCCchhcccccceeee--cchhhhhhc-------chhhhhhcCcEEEEcccCcccc----------CCch
Confidence 999886643 3477777777 65554 333333322 3457777889999999886221 1111
Q ss_pred -CCCCCCcceEEEeccCccccccCcccccccccCCCcccceEecCCCCCCCCCcceeeccccCcCcccccCCCCcccccC
Q 046764 740 -LKPHQNLERFCISGYGETLRFENMQEREDWIPYSSSQEVEFYGNGCLIPFPSLETLRFENMQEREDWIPYSSSQEVEVF 818 (1113)
Q Consensus 740 -L~~~~~L~~L~L~~~~~~~~l~~L~~L~~~Lpl~~l~~~~~~g~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 818 (1113)
+..+..|-.|+++.+. ++.. |.....+
T Consensus 145 lfinLtDLLfLDLS~Nr-----------------------------------------------Le~L-----PPQ~RRL 172 (1255)
T KOG0444|consen 145 LFINLTDLLFLDLSNNR-----------------------------------------------LEML-----PPQIRRL 172 (1255)
T ss_pred HHHhhHhHhhhccccch-----------------------------------------------hhhc-----CHHHHHH
Confidence 1123334444444321 1111 2233445
Q ss_pred CCccEEEEecCcCccc---ccCCCCCCccEEEEeccc----CccccCCCCCcccEEEEeccCCCCcccCCCccccccccc
Q 046764 819 PNLRDLFLLRCSKLLG---TLPKHLPSLQKLVIQRCE----KLLVDLPSLPSLNELKLGGCKKGGLQKGQPIIGRRIHYG 891 (1113)
Q Consensus 819 ~~L~~L~L~~c~~L~~---~lp~~l~~L~~L~L~~c~----~L~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~ 891 (1113)
.+|++|.|+++|-..- .+| ++.+|+.|++++.. +++.++..+.+|..++++.|.....+ +
T Consensus 173 ~~LqtL~Ls~NPL~hfQLrQLP-smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vP------------e 239 (1255)
T KOG0444|consen 173 SMLQTLKLSNNPLNHFQLRQLP-SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVP------------E 239 (1255)
T ss_pred hhhhhhhcCCChhhHHHHhcCc-cchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcch------------H
Confidence 5566666666542210 222 34555556665543 33334444666677777666554322 4
Q ss_pred cCCCCCCcccccccCCCCC-cCcccCCCCCCceEEEcccCCCcccccccCCCCCcccCCCCccEEEeecCCCCcccCCCC
Q 046764 892 CADTSSSLRVCLQCCNSLT-NNARVQLPLSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHILSCPSPTSIFSEN 970 (1113)
Q Consensus 892 ~~~~l~~L~~L~~~~N~L~-~~~~l~~l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~c~~L~~ll~~~ 970 (1113)
.+..+++|+.|.+++|+++ ..-......+|+.|+++++. |+.+ |... ..++.|+.|.+.++. +...
T Consensus 240 cly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-Lt~L-P~av------cKL~kL~kLy~n~Nk-----L~Fe 306 (1255)
T KOG0444|consen 240 CLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ-LTVL-PDAV------CKLTKLTKLYANNNK-----LTFE 306 (1255)
T ss_pred HHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch-hccc-hHHH------hhhHHHHHHHhccCc-----cccc
Confidence 5566666666666666666 44445556677777777765 5555 4433 266777777654432 2333
Q ss_pred CcCCccCeEEEccccccccccccCCCCCCCeEEEEecCCCccccCCC---CCCccEEEEeecCCCCcccccCCCCCCcCe
Q 046764 971 ELPATLQRLEVNSCSKLALLTLSGNLPQGPKYLELTSCSKWESIADN---NTSLQVITVFRCKNLKTLPDGLHKLNNLQA 1047 (1113)
Q Consensus 971 ~l~~sL~~L~i~~c~~L~~l~l~~~lp~~L~~L~L~~c~~L~~lp~~---l~sL~~L~Ls~c~~l~~lP~~l~~L~sL~~ 1047 (1113)
++|+ -|....+|+.+. .++ +.++-+|++ +..|+.|.++. +.+-.+|++++-|+.|+.
T Consensus 307 GiPS-----GIGKL~~Levf~-------------aan-N~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~v 366 (1255)
T KOG0444|consen 307 GIPS-----GIGKLIQLEVFH-------------AAN-NKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKV 366 (1255)
T ss_pred CCcc-----chhhhhhhHHHH-------------hhc-cccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcce
Confidence 4443 222222233222 222 345555655 57788888875 457778888888888888
Q ss_pred eee--cccccccc
Q 046764 1048 FTI--CKNLVSFP 1058 (1113)
Q Consensus 1048 L~L--cn~L~slp 1058 (1113)
|++ .+++.--|
T Consensus 367 LDlreNpnLVMPP 379 (1255)
T KOG0444|consen 367 LDLRENPNLVMPP 379 (1255)
T ss_pred eeccCCcCccCCC
Confidence 888 66665433
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.50 E-value=1.9e-16 Score=170.00 Aligned_cols=368 Identities=20% Similarity=0.198 Sum_probs=187.1
Q ss_pred CCCCCccccEEecCCCCCcccChhhhccccccEEecccccccccccccccCCCcceEEEcCCceecccccccccccc-cc
Q 046764 604 HGGDLKHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNFDFCCWKDIDSALQELK-LL 682 (1113)
Q Consensus 604 ~i~~L~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~~~~i~~~~~~~l~~L~-L~ 682 (1113)
.++.+..|+.|+.++|.+.++|++|+.+..|+.|+..+ +.+..+|.+++++.+|..|++.+|.+....+..+. ++ +.
T Consensus 109 ~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~-N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~ 186 (565)
T KOG0472|consen 109 QIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATN-NQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLK 186 (565)
T ss_pred HHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccc-cccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHH
Confidence 34444445555555555555555555555555555444 34455555555555555555555544333333333 44 44
Q ss_pred ccccceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCCCCCcceEEEeccCccccccC
Q 046764 683 HLHGALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGETLRFEN 762 (1113)
Q Consensus 683 ~L~g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~L~~~~~~~~l~~ 762 (1113)
++. -..+.-+..+..++++.+|..|++..|.. ..+..+..+..|++|++..+....
T Consensus 187 ~ld---------~~~N~L~tlP~~lg~l~~L~~LyL~~Nki-----------~~lPef~gcs~L~Elh~g~N~i~~---- 242 (565)
T KOG0472|consen 187 HLD---------CNSNLLETLPPELGGLESLELLYLRRNKI-----------RFLPEFPGCSLLKELHVGENQIEM---- 242 (565)
T ss_pred hcc---------cchhhhhcCChhhcchhhhHHHHhhhccc-----------ccCCCCCccHHHHHHHhcccHHHh----
Confidence 444 11223344566788888888888877752 234456666667777665432111
Q ss_pred cccccccccCCCcccceEecCCCCCCCCCcceeeccccCcCcccccCCCCcccccCCCccEEEEecCcCcccccCCCCC-
Q 046764 763 MQEREDWIPYSSSQEVEFYGNGCLIPFPSLETLRFENMQEREDWIPYSSSQEVEVFPNLRDLFLLRCSKLLGTLPKHLP- 841 (1113)
Q Consensus 763 L~~L~~~Lpl~~l~~~~~~g~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~lp~~l~- 841 (1113)
+| ......+++|..|++.+. .+++. |+...-+.+|.+|+++++ .++ .+|..+.
T Consensus 243 -------lp-----------ae~~~~L~~l~vLDLRdN-klke~-----Pde~clLrsL~rLDlSNN-~is-~Lp~sLgn 296 (565)
T KOG0472|consen 243 -------LP-----------AEHLKHLNSLLVLDLRDN-KLKEV-----PDEICLLRSLERLDLSNN-DIS-SLPYSLGN 296 (565)
T ss_pred -------hH-----------HHHhcccccceeeecccc-ccccC-----chHHHHhhhhhhhcccCC-ccc-cCCccccc
Confidence 00 011124566666666653 23332 234445666777777766 455 5554332
Q ss_pred -CccEEEEecccCcc--c---------------------------------------cCCC---CCcccEEEEeccCCCC
Q 046764 842 -SLQKLVIQRCEKLL--V---------------------------------------DLPS---LPSLNELKLGGCKKGG 876 (1113)
Q Consensus 842 -~L~~L~L~~c~~L~--~---------------------------------------~l~~---l~~L~~L~L~~~~~~~ 876 (1113)
+|+.|.+.+++--+ . .++. ..+.+.|++++-+...
T Consensus 297 lhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~ 376 (565)
T KOG0472|consen 297 LHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTL 376 (565)
T ss_pred ceeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccccccc
Confidence 44555555553110 0 0010 2345555555544443
Q ss_pred cccC-------CCccccccccccCCCC----CCcccc----cccCCCCC-cCcccCCCCCCceEEEcccCCCcccccccC
Q 046764 877 LQKG-------QPIIGRRIHYGCADTS----SSLRVC----LQCCNSLT-NNARVQLPLSLKDLSIAFCDNLRTLVEEEG 940 (1113)
Q Consensus 877 ~~~~-------~~l~~l~l~~~~~~~l----~~L~~L----~~~~N~L~-~~~~l~~l~~L~~L~Ls~c~~L~~l~~~~~ 940 (1113)
.+.- ..+..+.+....+..+ +.++++ .+..|.+. .+..+..+++|..|+++++. +-++ |.+.
T Consensus 377 VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~-Ln~L-P~e~ 454 (565)
T KOG0472|consen 377 VPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNL-LNDL-PEEM 454 (565)
T ss_pred CCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccch-hhhc-chhh
Confidence 2210 1112222222222222 222222 44555555 45556667777777777664 4444 4333
Q ss_pred CCCCcccCCCCccEEEeecCCCCcccCCCCCcCCccCeEEEccccccccccccCCCCCCCeEEEEecCCCccccCCC---
Q 046764 941 IPKGSRKYSSHLECLHILSCPSPTSIFSENELPATLQRLEVNSCSKLALLTLSGNLPQGPKYLELTSCSKWESIADN--- 1017 (1113)
Q Consensus 941 lp~~l~~~l~~L~~L~L~~c~~L~~ll~~~~l~~sL~~L~i~~c~~L~~l~l~~~lp~~L~~L~L~~c~~L~~lp~~--- 1017 (1113)
..+..|+.|+|+.+. ... +|. .|. .+..++.+-.+ .+++.+++..
T Consensus 455 ------~~lv~Lq~LnlS~Nr-Fr~------lP~--------~~y----------~lq~lEtllas-~nqi~~vd~~~l~ 502 (565)
T KOG0472|consen 455 ------GSLVRLQTLNLSFNR-FRM------LPE--------CLY----------ELQTLETLLAS-NNQIGSVDPSGLK 502 (565)
T ss_pred ------hhhhhhheecccccc-ccc------chH--------HHh----------hHHHHHHHHhc-cccccccChHHhh
Confidence 255567777765531 111 110 000 11112233222 2466666655
Q ss_pred -CCCccEEEEeecCCCCcccccCCCCCCcCeeee-ccccccccC
Q 046764 1018 -NTSLQVITVFRCKNLKTLPDGLHKLNNLQAFTI-CKNLVSFPK 1059 (1113)
Q Consensus 1018 -l~sL~~L~Ls~c~~l~~lP~~l~~L~sL~~L~L-cn~L~slp~ 1059 (1113)
+.+|..||+.+ +.+..+|..++++++|++|++ .|.+. .|.
T Consensus 503 nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpfr-~Pr 544 (565)
T KOG0472|consen 503 NMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPFR-QPR 544 (565)
T ss_pred hhhhcceeccCC-CchhhCChhhccccceeEEEecCCccC-CCH
Confidence 78999999987 578999999999999999999 77776 453
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.41 E-value=1.8e-12 Score=158.78 Aligned_cols=51 Identities=18% Similarity=0.276 Sum_probs=40.9
Q ss_pred cEEecCCCCCcccChhhhccccccEEecccccccccccccccCCCcceEEEcCCcee
Q 046764 612 RHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNFDFCC 668 (1113)
Q Consensus 612 r~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~~~~i 668 (1113)
..|+|++++++.+|..+.. +|+.|++++ +.+..+|.. +++|++|++++|.+
T Consensus 204 ~~LdLs~~~LtsLP~~l~~--~L~~L~L~~-N~Lt~LP~l---p~~Lk~LdLs~N~L 254 (788)
T PRK15387 204 AVLNVGESGLTTLPDCLPA--HITTLVIPD-NNLTSLPAL---PPELRTLEVSGNQL 254 (788)
T ss_pred cEEEcCCCCCCcCCcchhc--CCCEEEccC-CcCCCCCCC---CCCCcEEEecCCcc
Confidence 5788999999999987764 899999998 577888863 57888898888744
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.29 E-value=1.9e-11 Score=149.76 Aligned_cols=233 Identities=23% Similarity=0.247 Sum_probs=163.8
Q ss_pred CCcceeeccccCcCcccccCCCCcccccCCCccEEEEecCcCcccccCCCCCCccEEEEecccCccccCCC-CCcccEEE
Q 046764 790 PSLETLRFENMQEREDWIPYSSSQEVEVFPNLRDLFLLRCSKLLGTLPKHLPSLQKLVIQRCEKLLVDLPS-LPSLNELK 868 (1113)
Q Consensus 790 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~lp~~l~~L~~L~L~~c~~L~~~l~~-l~~L~~L~ 868 (1113)
++|+.|.+.++ .+..++ ...++|++|++++| +++ .+|..+++|+.|++.+|. +. .++. +++|+.|+
T Consensus 222 ~~L~~L~L~~N-~Lt~LP--------~lp~~Lk~LdLs~N-~Lt-sLP~lp~sL~~L~Ls~N~-L~-~Lp~lp~~L~~L~ 288 (788)
T PRK15387 222 AHITTLVIPDN-NLTSLP--------ALPPELRTLEVSGN-QLT-SLPVLPPGLLELSIFSNP-LT-HLPALPSGLCKLW 288 (788)
T ss_pred cCCCEEEccCC-cCCCCC--------CCCCCCcEEEecCC-ccC-cccCcccccceeeccCCc-hh-hhhhchhhcCEEE
Confidence 46888888764 344333 13578899999887 777 778777888888888874 22 2222 45788888
Q ss_pred EeccCCCCcccCCCccccccccccCCCCCCcccccccCCCCCcCcccCCCCCCceEEEcccCCCcccccccCCCCCcccC
Q 046764 869 LGGCKKGGLQKGQPIIGRRIHYGCADTSSSLRVCLQCCNSLTNNARVQLPLSLKDLSIAFCDNLRTLVEEEGIPKGSRKY 948 (1113)
Q Consensus 869 L~~~~~~~~~~~~~l~~l~l~~~~~~~l~~L~~L~~~~N~L~~~~~l~~l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~ 948 (1113)
+++|.....+ ..+++|+.|++++|++..... .+.+|+.|++++|. ++.+ |. .
T Consensus 289 Ls~N~Lt~LP---------------~~p~~L~~LdLS~N~L~~Lp~--lp~~L~~L~Ls~N~-L~~L-P~---------l 340 (788)
T PRK15387 289 IFGNQLTSLP---------------VLPPGLQELSVSDNQLASLPA--LPSELCKLWAYNNQ-LTSL-PT---------L 340 (788)
T ss_pred CcCCcccccc---------------ccccccceeECCCCccccCCC--CcccccccccccCc-cccc-cc---------c
Confidence 8888766432 124678888888888872222 24578888888875 5554 32 1
Q ss_pred CCCccEEEeecCCCCcccCCCCCcCCccCeEEEccccccccccccCCCCCCCeEEEEecCCCccccCCCCCCccEEEEee
Q 046764 949 SSHLECLHILSCPSPTSIFSENELPATLQRLEVNSCSKLALLTLSGNLPQGPKYLELTSCSKWESIADNNTSLQVITVFR 1028 (1113)
Q Consensus 949 l~~L~~L~L~~c~~L~~ll~~~~l~~sL~~L~i~~c~~L~~l~l~~~lp~~L~~L~L~~c~~L~~lp~~l~sL~~L~Ls~ 1028 (1113)
..+|+.|+++++ .++. +|. ++.+|+.|++.++ .+..++ .++.+|+.|+++++ .++.+|...++|+.|++++
T Consensus 341 p~~Lq~LdLS~N-~Ls~-LP~--lp~~L~~L~Ls~N-~L~~LP---~l~~~L~~LdLs~N-~Lt~LP~l~s~L~~LdLS~ 411 (788)
T PRK15387 341 PSGLQELSVSDN-QLAS-LPT--LPSELYKLWAYNN-RLTSLP---ALPSGLKELIVSGN-RLTSLPVLPSELKELMVSG 411 (788)
T ss_pred ccccceEecCCC-ccCC-CCC--CCcccceehhhcc-ccccCc---ccccccceEEecCC-cccCCCCcccCCCEEEccC
Confidence 247889999874 4555 443 4567888877663 344332 23455999999885 6778887788999999999
Q ss_pred cCCCCcccccCCCCCCcCeeee-ccccccccCCCCCCCCcCcEEEeCCC
Q 046764 1029 CKNLKTLPDGLHKLNNLQAFTI-CKNLVSFPKGGLPSTQLRDPDITGCQ 1076 (1113)
Q Consensus 1029 c~~l~~lP~~l~~L~sL~~L~L-cn~L~slp~~~~~~~sL~~L~l~~C~ 1076 (1113)
| .+..+|... .+|+.|++ .|++..+|.....+++|+.|++++++
T Consensus 412 N-~LssIP~l~---~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 412 N-RLTSLPMLP---SGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred C-cCCCCCcch---hhhhhhhhccCcccccChHHhhccCCCeEECCCCC
Confidence 6 577888643 46788899 89999999877677799999998865
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.17 E-value=7.8e-13 Score=142.69 Aligned_cols=77 Identities=27% Similarity=0.301 Sum_probs=59.9
Q ss_pred CCCCCccccEEecCCCCCccc-ChhhhccccccEEeccccccccccccc-ccCCCcceEEEcCCceecccccccccccc
Q 046764 604 HGGDLKHLRHLDLSETDIQIL-PESVNTLYNLRMLMLQKCNQLEKMCSD-MGNLLKLHHLDNFDFCCWKDIDSALQELK 680 (1113)
Q Consensus 604 ~i~~L~~Lr~L~Ls~~~i~~L-P~~i~~L~~L~~LdL~~c~~l~~LP~~-i~~L~~L~~L~L~~~~i~~~~~~~l~~L~ 680 (1113)
.|+.+++||.||||+|+|+.+ |..|..|+.|-.|-+.+++.++.+|++ |++|..|+.|.+.-|.+.......+.+|+
T Consensus 86 aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~ 164 (498)
T KOG4237|consen 86 AFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLP 164 (498)
T ss_pred hccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhh
Confidence 788899999999999999988 889999999988888887889999865 48888888888876654333333333333
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.08 E-value=1.8e-10 Score=142.23 Aligned_cols=161 Identities=24% Similarity=0.377 Sum_probs=110.4
Q ss_pred CcccccccCCCCC-cCcccCCCCCCceEEEcccCCCcccccccCCCCCcccCCCCccEEEeecCCCCcccCCCCCcCCcc
Q 046764 898 SLRVCLQCCNSLT-NNARVQLPLSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHILSCPSPTSIFSENELPATL 976 (1113)
Q Consensus 898 ~L~~L~~~~N~L~-~~~~l~~l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~c~~L~~ll~~~~l~~sL 976 (1113)
+|+.|.+.+|.+. .+..+ +++|+.|++++| ++..+ |.. + .++|+.|++++| .++. +|. .++.+|
T Consensus 242 ~L~~L~Ls~N~L~~LP~~l--~s~L~~L~Ls~N-~L~~L-P~~-----l---~~sL~~L~Ls~N-~Lt~-LP~-~lp~sL 306 (754)
T PRK15370 242 TIQEMELSINRITELPERL--PSALQSLDLFHN-KISCL-PEN-----L---PEELRYLSVYDN-SIRT-LPA-HLPSGI 306 (754)
T ss_pred cccEEECcCCccCcCChhH--hCCCCEEECcCC-ccCcc-ccc-----c---CCCCcEEECCCC-cccc-Ccc-cchhhH
Confidence 3444444444444 22222 358999999866 46655 432 2 257999999886 5665 543 345578
Q ss_pred CeEEEccccccccccccCCCCCCCeEEEEecCCCccccCCC-CCCccEEEEeecCCCCcccccCCCCCCcCeeee-cccc
Q 046764 977 QRLEVNSCSKLALLTLSGNLPQGPKYLELTSCSKWESIADN-NTSLQVITVFRCKNLKTLPDGLHKLNNLQAFTI-CKNL 1054 (1113)
Q Consensus 977 ~~L~i~~c~~L~~l~l~~~lp~~L~~L~L~~c~~L~~lp~~-l~sL~~L~Ls~c~~l~~lP~~l~~L~sL~~L~L-cn~L 1054 (1113)
+.|++.++ ++..++ ..++.+|+.|++++| .++.+|.. +++|+.|++++| .+..+|..+. ++|+.|+| +|++
T Consensus 307 ~~L~Ls~N-~Lt~LP--~~l~~sL~~L~Ls~N-~Lt~LP~~l~~sL~~L~Ls~N-~L~~LP~~lp--~~L~~LdLs~N~L 379 (754)
T PRK15370 307 THLNVQSN-SLTALP--ETLPPGLKTLEAGEN-ALTSLPASLPPELQVLDVSKN-QITVLPETLP--PTITTLDVSRNAL 379 (754)
T ss_pred HHHHhcCC-ccccCC--ccccccceeccccCC-ccccCChhhcCcccEEECCCC-CCCcCChhhc--CCcCEEECCCCcC
Confidence 88888775 344332 234455999999986 57778876 779999999987 4677887663 68999999 8889
Q ss_pred ccccCCCCCCCCcCcEEEeCCCCCccCCC
Q 046764 1055 VSFPKGGLPSTQLRDPDITGCQKLEALPD 1083 (1113)
Q Consensus 1055 ~slp~~~~~~~sL~~L~l~~C~~L~~l~~ 1083 (1113)
..+|... + ++|+.|++++ ++|+.+|.
T Consensus 380 t~LP~~l-~-~sL~~LdLs~-N~L~~LP~ 405 (754)
T PRK15370 380 TNLPENL-P-AALQIMQASR-NNLVRLPE 405 (754)
T ss_pred CCCCHhH-H-HHHHHHhhcc-CCcccCch
Confidence 9988753 3 2799999988 56777775
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.03 E-value=4e-10 Score=139.30 Aligned_cols=218 Identities=23% Similarity=0.295 Sum_probs=129.4
Q ss_pred CCccEEEEecCcCcccccCC-CCCCccEEEEecccCccccCCC--CCcccEEEEeccCCCCcccCCCccccccccccCCC
Q 046764 819 PNLRDLFLLRCSKLLGTLPK-HLPSLQKLVIQRCEKLLVDLPS--LPSLNELKLGGCKKGGLQKGQPIIGRRIHYGCADT 895 (1113)
Q Consensus 819 ~~L~~L~L~~c~~L~~~lp~-~l~~L~~L~L~~c~~L~~~l~~--l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~~ 895 (1113)
++|+.|++++| +++ .+|. .+++|+.|++++|. +. .++. .++|+.|++++|.....+. .+
T Consensus 199 ~~L~~L~Ls~N-~Lt-sLP~~l~~nL~~L~Ls~N~-Lt-sLP~~l~~~L~~L~Ls~N~L~~LP~------------~l-- 260 (754)
T PRK15370 199 EQITTLILDNN-ELK-SLPENLQGNIKTLYANSNQ-LT-SIPATLPDTIQEMELSINRITELPE------------RL-- 260 (754)
T ss_pred cCCcEEEecCC-CCC-cCChhhccCCCEEECCCCc-cc-cCChhhhccccEEECcCCccCcCCh------------hH--
Confidence 35666666666 555 4553 33466666666653 22 1221 2466777777766553221 11
Q ss_pred CCCcccccccCCCCC-cCcccCCCCCCceEEEcccCCCcccccccCCCCCcccCCCCccEEEeecCCCCcccCCCCCcCC
Q 046764 896 SSSLRVCLQCCNSLT-NNARVQLPLSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHILSCPSPTSIFSENELPA 974 (1113)
Q Consensus 896 l~~L~~L~~~~N~L~-~~~~l~~l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~c~~L~~ll~~~~l~~ 974 (1113)
.++|+.|++++|++. .+..+ +++|+.|++++|. ++.+ |.. + .++|+.|++++| .++. +|.. ++.
T Consensus 261 ~s~L~~L~Ls~N~L~~LP~~l--~~sL~~L~Ls~N~-Lt~L-P~~-----l---p~sL~~L~Ls~N-~Lt~-LP~~-l~~ 325 (754)
T PRK15370 261 PSALQSLDLFHNKISCLPENL--PEELRYLSVYDNS-IRTL-PAH-----L---PSGITHLNVQSN-SLTA-LPET-LPP 325 (754)
T ss_pred hCCCCEEECcCCccCcccccc--CCCCcEEECCCCc-cccC-ccc-----c---hhhHHHHHhcCC-cccc-CCcc-ccc
Confidence 235666666666666 33333 3578888887764 5554 322 1 235777777764 3444 3332 335
Q ss_pred ccCeEEEccccccccccccCCCCCCCeEEEEecCCCccccCCC-CCCccEEEEeecCCCCcccccCCCCCCcCeeee-cc
Q 046764 975 TLQRLEVNSCSKLALLTLSGNLPQGPKYLELTSCSKWESIADN-NTSLQVITVFRCKNLKTLPDGLHKLNNLQAFTI-CK 1052 (1113)
Q Consensus 975 sL~~L~i~~c~~L~~l~l~~~lp~~L~~L~L~~c~~L~~lp~~-l~sL~~L~Ls~c~~l~~lP~~l~~L~sL~~L~L-cn 1052 (1113)
+|+.|++.+|. ++.++ ..+|.+|+.|++++| .+..+|.. .++|+.|+|++| .+..+|..+. .+|+.|++ .|
T Consensus 326 sL~~L~Ls~N~-Lt~LP--~~l~~sL~~L~Ls~N-~L~~LP~~lp~~L~~LdLs~N-~Lt~LP~~l~--~sL~~LdLs~N 398 (754)
T PRK15370 326 GLKTLEAGENA-LTSLP--ASLPPELQVLDVSKN-QITVLPETLPPTITTLDVSRN-ALTNLPENLP--AALQIMQASRN 398 (754)
T ss_pred cceeccccCCc-cccCC--hhhcCcccEEECCCC-CCCcCChhhcCCcCEEECCCC-cCCCCCHhHH--HHHHHHhhccC
Confidence 77777777763 44332 234555888888886 56677766 678888888886 4667777654 36888888 88
Q ss_pred ccccccCCCC----CCCCcCcEEEeCCC
Q 046764 1053 NLVSFPKGGL----PSTQLRDPDITGCQ 1076 (1113)
Q Consensus 1053 ~L~slp~~~~----~~~sL~~L~l~~C~ 1076 (1113)
++..+|.... ..+++..|++.+++
T Consensus 399 ~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 399 NLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 8887775321 23567788887755
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.01 E-value=2.6e-10 Score=143.02 Aligned_cols=129 Identities=29% Similarity=0.374 Sum_probs=93.2
Q ss_pred CCccccEEecCCCC--CcccCh-hhhccccccEEecccccccccccccccCCCcceEEEcCCceecccccccccccc-cc
Q 046764 607 DLKHLRHLDLSETD--IQILPE-SVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNFDFCCWKDIDSALQELK-LL 682 (1113)
Q Consensus 607 ~L~~Lr~L~Ls~~~--i~~LP~-~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~~~~i~~~~~~~l~~L~-L~ 682 (1113)
+.+.|+.|-+.+|. +..++. .|..++.|++|||++|..+.++|..|++|.+||+|+++++.+ ...|.++++|+ |.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I-~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI-SHLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc-cccchHHHHHHhhh
Confidence 44579999999986 677754 478899999999999999999999999999999999999987 47899999999 88
Q ss_pred ccccceeecc-ccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCCCCCcceEEEe
Q 046764 683 HLHGALEISK-LENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKPHQNLERFCIS 752 (1113)
Q Consensus 683 ~L~g~L~i~~-l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~L~ 752 (1113)
+|. +.... +... +..+..+++|+.|.+.... .......+..+..+.+|+.+.+.
T Consensus 622 ~Ln--l~~~~~l~~~-------~~i~~~L~~Lr~L~l~~s~-------~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 622 YLN--LEVTGRLESI-------PGILLELQSLRVLRLPRSA-------LSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred eec--cccccccccc-------cchhhhcccccEEEeeccc-------cccchhhHHhhhcccchhhheee
Confidence 886 22211 1111 2234558889999886543 11222344455555666665554
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.84 E-value=1.7e-10 Score=111.01 Aligned_cols=154 Identities=21% Similarity=0.250 Sum_probs=115.8
Q ss_pred cccccccCCCCCeeEEccCCcC------CCCCCccccEEecCCCCCcccChhhhccccccEEecccccccccccccccCC
Q 046764 582 IKMFEPFFEFENLQTFLPTTVS------HGGDLKHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNL 655 (1113)
Q Consensus 582 ~~~~~~~~~l~~Lr~L~~~~~~------~i~~L~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L 655 (1113)
+..+..+..++++..|.++.+. .|..+++|++|++++|+|+++|.+|+.|+.|+.|++.- +.+..+|.+||.+
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~ 101 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSF 101 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccCCC
Confidence 3344555666777777666654 78899999999999999999999999999999999997 6889999999999
Q ss_pred CcceEEEcCCceeccc-ccccccccc-ccccccceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhh
Q 046764 656 LKLHHLDNFDFCCWKD-IDSALQELK-LLHLHGALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIE 733 (1113)
Q Consensus 656 ~~L~~L~L~~~~i~~~-~~~~l~~L~-L~~L~g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~ 733 (1113)
+-|+.||+..|.+... .|..+-.+. +..|. +.-++ -+..+..++.+++|+.|.+..|. -
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlraly--l~dnd-------fe~lp~dvg~lt~lqil~lrdnd----------l 162 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALY--LGDND-------FEILPPDVGKLTNLQILSLRDND----------L 162 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHHHH--hcCCC-------cccCChhhhhhcceeEEeeccCc----------h
Confidence 9999999998865443 355555555 44443 21121 12345568899999999987664 2
Q ss_pred HhhhccCCCCCCcceEEEeccC
Q 046764 734 THVLDMLKPHQNLERFCISGYG 755 (1113)
Q Consensus 734 ~~~l~~L~~~~~L~~L~L~~~~ 755 (1113)
...+..++.+..|++|.|.|+.
T Consensus 163 l~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 163 LSLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hhCcHHHHHHHHHHHHhcccce
Confidence 3355677778899999999865
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.64 E-value=1.1e-08 Score=116.50 Aligned_cols=64 Identities=19% Similarity=0.128 Sum_probs=39.2
Q ss_pred CCCccccEEecCCCCCc-----ccChhhhccccccEEeccccccc------ccccccccCCCcceEEEcCCceec
Q 046764 606 GDLKHLRHLDLSETDIQ-----ILPESVNTLYNLRMLMLQKCNQL------EKMCSDMGNLLKLHHLDNFDFCCW 669 (1113)
Q Consensus 606 ~~L~~Lr~L~Ls~~~i~-----~LP~~i~~L~~L~~LdL~~c~~l------~~LP~~i~~L~~L~~L~L~~~~i~ 669 (1113)
..+.+|++|+++++.++ .++..+...++|++|+++++... ..++..+.++++|+.|++++|.+.
T Consensus 20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 94 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG 94 (319)
T ss_pred HHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC
Confidence 34555777777777763 34556666667777777764322 223445566777777777776543
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.63 E-value=1.1e-09 Score=105.54 Aligned_cols=61 Identities=26% Similarity=0.385 Sum_probs=55.6
Q ss_pred CCCccccEEecCCCCCcccChhhhccccccEEecccccccccccccccCCCcceEEEcCCce
Q 046764 606 GDLKHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNFDFC 667 (1113)
Q Consensus 606 ~~L~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~~~~ 667 (1113)
-.+.+...|-||+|+++.+|+.|..|.+|+.|++.+ +.++++|..|+.|++|++|++.-|.
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgmnr 90 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGMNR 90 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecchhh
Confidence 456788889999999999999999999999999997 6899999999999999999987653
No 24
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.60 E-value=6.7e-08 Score=109.27 Aligned_cols=160 Identities=18% Similarity=0.345 Sum_probs=110.0
Q ss_pred cCCCCCCceEEEcccCCCcccccccCCCCCcccCCCCccEEEeecCCCCcccCCCCCcCCccCeEEEccccccccccccC
Q 046764 915 VQLPLSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHILSCPSPTSIFSENELPATLQRLEVNSCSKLALLTLSG 994 (1113)
Q Consensus 915 l~~l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~c~~L~~ll~~~~l~~sL~~L~i~~c~~L~~l~l~~ 994 (1113)
+..+.++..|++++| .|+.+ | .+| ++|++|.+++|..++. +|. .+|.+|+.|.+++|.++.
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sL-P--~LP-------~sLtsL~Lsnc~nLts-LP~-~LP~nLe~L~Ls~Cs~L~------ 108 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESL-P--VLP-------NELTEITIENCNNLTT-LPG-SIPEGLEKLTVCHCPEIS------ 108 (426)
T ss_pred HHHhcCCCEEEeCCC-CCccc-C--CCC-------CCCcEEEccCCCCccc-CCc-hhhhhhhheEccCccccc------
Confidence 345689999999999 58887 6 233 4699999999999987 664 467799999999998876
Q ss_pred CCCCCCeEEEEec--CCCccccCCCCCCccEEEEeecCCC--CcccccCCCCCCcCeeee--ccccccccCCCCCCCCcC
Q 046764 995 NLPQGPKYLELTS--CSKWESIADNNTSLQVITVFRCKNL--KTLPDGLHKLNNLQAFTI--CKNLVSFPKGGLPSTQLR 1068 (1113)
Q Consensus 995 ~lp~~L~~L~L~~--c~~L~~lp~~l~sL~~L~Ls~c~~l--~~lP~~l~~L~sL~~L~L--cn~L~slp~~~~~~~sL~ 1068 (1113)
.+|.+|+.|++.+ |..+..+| ++|+.|.+.+++.. ..+|.. --++|++|++ |..+ .+|. .+|. +|+
T Consensus 109 sLP~sLe~L~L~~n~~~~L~~LP---ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~-~LP~-SLk 180 (426)
T PRK15386 109 GLPESVRSLEIKGSATDSIKNVP---NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPE-KLPE-SLQ 180 (426)
T ss_pred ccccccceEEeCCCCCcccccCc---chHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCcc-cccc-cCc
Confidence 5677799999875 23344454 67888888654322 111211 1168999999 5544 4553 3564 999
Q ss_pred cEEEeCCCC-CccCCCCCCCCCcCccccccccCCC
Q 046764 1069 DPDITGCQK-LEALPDGDLSSTFKTGKSSKCGIFP 1102 (1113)
Q Consensus 1069 ~L~l~~C~~-L~~l~~~~l~~sL~~L~~~~c~~lp 1102 (1113)
.|+++.+.. ...++...+|..+ .+++.+|-.+.
T Consensus 181 ~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~ 214 (426)
T PRK15386 181 SITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLS 214 (426)
T ss_pred EEEecccccccccCccccccccc-EechhhhcccC
Confidence 999876531 1235556677777 88888885553
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.47 E-value=4.4e-08 Score=111.65 Aligned_cols=64 Identities=20% Similarity=0.125 Sum_probs=44.9
Q ss_pred CCCCccccEEecCCCCCcc-------cChhhhccccccEEecccccccccccccccCCCc---ceEEEcCCcee
Q 046764 605 GGDLKHLRHLDLSETDIQI-------LPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLK---LHHLDNFDFCC 668 (1113)
Q Consensus 605 i~~L~~Lr~L~Ls~~~i~~-------LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~---L~~L~L~~~~i 668 (1113)
+...+.|++|+++++.+.. ++..+..+++|+.|++++|......+..+..+.+ |++|++++|.+
T Consensus 47 l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~ 120 (319)
T cd00116 47 LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGL 120 (319)
T ss_pred HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCcc
Confidence 4456678888888876652 3456777888999999887554455555555555 88888888754
No 26
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.37 E-value=1.5e-06 Score=98.47 Aligned_cols=137 Identities=30% Similarity=0.524 Sum_probs=75.8
Q ss_pred CCCCceEEEcccCCCcccccccCCCCCcccCCCCccEEEeecCCCCcccCCCCCcCCccCeEEEccccccccccccCCCC
Q 046764 918 PLSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHILSCPSPTSIFSENELPATLQRLEVNSCSKLALLTLSGNLP 997 (1113)
Q Consensus 918 l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~c~~L~~ll~~~~l~~sL~~L~i~~c~~L~~l~l~~~lp 997 (1113)
+++|+.|.+++|.+++.+ |.. + .++|++|++++|..+.. +|.+|+.|++.. ..+..+ ..+|
T Consensus 71 P~sLtsL~Lsnc~nLtsL-P~~-L-------P~nLe~L~Ls~Cs~L~s------LP~sLe~L~L~~-n~~~~L---~~LP 131 (426)
T PRK15386 71 PNELTEITIENCNNLTTL-PGS-I-------PEGLEKLTVCHCPEISG------LPESVRSLEIKG-SATDSI---KNVP 131 (426)
T ss_pred CCCCcEEEccCCCCcccC-Cch-h-------hhhhhheEccCcccccc------cccccceEEeCC-CCCccc---ccCc
Confidence 345667777777666555 432 1 24567777777765554 445666666642 222111 1566
Q ss_pred CCCeEEEEecCCCc--cccCCC-CCCccEEEEeecCCCCcccccCCCCCCcCeeee-ccccc--cccCCCCCCCCcCcEE
Q 046764 998 QGPKYLELTSCSKW--ESIADN-NTSLQVITVFRCKNLKTLPDGLHKLNNLQAFTI-CKNLV--SFPKGGLPSTQLRDPD 1071 (1113)
Q Consensus 998 ~~L~~L~L~~c~~L--~~lp~~-l~sL~~L~Ls~c~~l~~lP~~l~~L~sL~~L~L-cn~L~--slp~~~~~~~sL~~L~ 1071 (1113)
.+|+.|.+.++... ..+|.. +++|++|++++|..+ .+|..+. .+|+.|.+ .+... .++...+| +++ .|+
T Consensus 132 ssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~~~sLeI~~~sLP-~nl-~L~ 206 (426)
T PRK15386 132 NGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQKTTWNISFEGFP-DGL-DID 206 (426)
T ss_pred chHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEecccccccccCcccccc-ccc-Eec
Confidence 66777776543211 122222 467888888887654 3454443 47888887 32222 24444455 367 788
Q ss_pred EeCCCCC
Q 046764 1072 ITGCQKL 1078 (1113)
Q Consensus 1072 l~~C~~L 1078 (1113)
+.+|-++
T Consensus 207 f~n~lkL 213 (426)
T PRK15386 207 LQNSVLL 213 (426)
T ss_pred hhhhccc
Confidence 8887544
No 27
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.26 E-value=1.3e-08 Score=111.67 Aligned_cols=131 Identities=18% Similarity=0.298 Sum_probs=62.6
Q ss_pred CCCCceEEEcccCCCcccccccCCCCCcccCCCCccEEEeecCCCCcccCCC---CCcCCccCeEEEccccccccc---c
Q 046764 918 PLSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHILSCPSPTSIFSE---NELPATLQRLEVNSCSKLALL---T 991 (1113)
Q Consensus 918 l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~c~~L~~ll~~---~~l~~sL~~L~i~~c~~L~~l---~ 991 (1113)
...|+.|..++|.++.+. +.. .+.++.++|+.|.++.|..++. ... +.....|+.+++..|.....- .
T Consensus 293 c~~lq~l~~s~~t~~~d~-~l~----aLg~~~~~L~~l~l~~c~~fsd-~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~s 366 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDE-VLW----ALGQHCHNLQVLELSGCQQFSD-RGFTMLGRNCPHLERLDLEECGLITDGTLAS 366 (483)
T ss_pred hhHhhhhcccCCCCCchH-HHH----HHhcCCCceEEEeccccchhhh-hhhhhhhcCChhhhhhcccccceehhhhHhh
Confidence 456666666666654443 111 1223556666676666665443 111 111124555555554432211 2
Q ss_pred ccCCCCCCCeEEEEecCCCcccc-----CC---CCCCccEEEEeecCCCCcc-cccCCCCCCcCeeee--ccccc
Q 046764 992 LSGNLPQGPKYLELTSCSKWESI-----AD---NNTSLQVITVFRCKNLKTL-PDGLHKLNNLQAFTI--CKNLV 1055 (1113)
Q Consensus 992 l~~~lp~~L~~L~L~~c~~L~~l-----p~---~l~sL~~L~Ls~c~~l~~l-P~~l~~L~sL~~L~L--cn~L~ 1055 (1113)
++.+-|. |+.|.++.|..+++- .. +...|+.|.+++|+.+..- -+.+..+++|+.+++ |.++.
T Consensus 367 ls~~C~~-lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 367 LSRNCPR-LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred hccCCch-hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence 2333444 556666655444332 11 1556666666666654432 233444555665555 44444
No 28
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.13 E-value=2.9e-08 Score=108.94 Aligned_cols=273 Identities=18% Similarity=0.229 Sum_probs=165.6
Q ss_pred CcceeeccccCcCcccccCCCCcccccCCCccEEEEecCcCcccc----cCCCCCCccEEEEecccCccc-----cCCCC
Q 046764 791 SLETLRFENMQEREDWIPYSSSQEVEVFPNLRDLFLLRCSKLLGT----LPKHLPSLQKLVIQRCEKLLV-----DLPSL 861 (1113)
Q Consensus 791 ~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~----lp~~l~~L~~L~L~~c~~L~~-----~l~~l 861 (1113)
.|+.|.+.+|.....-.. ......+|+++.|.+.+|.++++. +....++|+.|.+..|..++. ....+
T Consensus 139 ~lk~LSlrG~r~v~~ssl---rt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC 215 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSL---RTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC 215 (483)
T ss_pred ccccccccccccCCcchh---hHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh
Confidence 467777777755443221 223346777777777777665532 223566777777777765543 12237
Q ss_pred CcccEEEEeccCCCCcccCCCccccccccccCCCCCCcccc--cccCCCCC---cCcccCCCCCCceEEEcccCCCcccc
Q 046764 862 PSLNELKLGGCKKGGLQKGQPIIGRRIHYGCADTSSSLRVC--LQCCNSLT---NNARVQLPLSLKDLSIAFCDNLRTLV 936 (1113)
Q Consensus 862 ~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~~l~~L~~L--~~~~N~L~---~~~~l~~l~~L~~L~Ls~c~~L~~l~ 936 (1113)
++|++|+++.|+....... .....++..++.+ ..|. .+. ....-....-+.++++..|..+++.
T Consensus 216 ~kL~~lNlSwc~qi~~~gv---------~~~~rG~~~l~~~~~kGC~-e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~- 284 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISGNGV---------QALQRGCKELEKLSLKGCL-ELELEALLKAAAYCLEILKLNLQHCNQLTDE- 284 (483)
T ss_pred hhHHHhhhccCchhhcCcc---------hHHhccchhhhhhhhcccc-cccHHHHHHHhccChHhhccchhhhccccch-
Confidence 7777777777765542110 0112333344444 2222 222 1111123445667777788777664
Q ss_pred cccCCCCCcccCCCCccEEEeecCCCCcccCCCC---CcCCccCeEEEccccccccc---cccCCCCCCCeEEEEecCCC
Q 046764 937 EEEGIPKGSRKYSSHLECLHILSCPSPTSIFSEN---ELPATLQRLEVNSCSKLALL---TLSGNLPQGPKYLELTSCSK 1010 (1113)
Q Consensus 937 ~~~~lp~~l~~~l~~L~~L~L~~c~~L~~ll~~~---~l~~sL~~L~i~~c~~L~~l---~l~~~lp~~L~~L~L~~c~~ 1010 (1113)
.... +...+..|+.|..++|..+.. .+.. .-..+|+.|.+..|..+... .+..+.+. |+.+++.+|..
T Consensus 285 ~~~~----i~~~c~~lq~l~~s~~t~~~d-~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~-Le~l~~e~~~~ 358 (483)
T KOG4341|consen 285 DLWL----IACGCHALQVLCYSSCTDITD-EVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPH-LERLDLEECGL 358 (483)
T ss_pred HHHH----HhhhhhHhhhhcccCCCCCch-HHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChh-hhhhcccccce
Confidence 2111 113578899999999998775 3322 22258999999999977653 33456677 99999999865
Q ss_pred ccc-----cCCCCCCccEEEEeecCCCCcc-----cccCCCCCCcCeeee--cccccccc-CCCCCCCCcCcEEEeCCCC
Q 046764 1011 WES-----IADNNTSLQVITVFRCKNLKTL-----PDGLHKLNNLQAFTI--CKNLVSFP-KGGLPSTQLRDPDITGCQK 1077 (1113)
Q Consensus 1011 L~~-----lp~~l~sL~~L~Ls~c~~l~~l-----P~~l~~L~sL~~L~L--cn~L~slp-~~~~~~~sL~~L~l~~C~~ 1077 (1113)
... +...++.|+.|.+++|..+... ..+-..+..|+.|.+ |+.+..-- +.....++|+.+++.+|..
T Consensus 359 ~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 359 ITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred ehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 443 3334899999999999877654 233355677888888 88775311 1112345888888888887
Q ss_pred CccCCC
Q 046764 1078 LEALPD 1083 (1113)
Q Consensus 1078 L~~l~~ 1083 (1113)
..+=+.
T Consensus 439 vtk~~i 444 (483)
T KOG4341|consen 439 VTKEAI 444 (483)
T ss_pred hhhhhh
Confidence 765554
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=9.3e-07 Score=97.88 Aligned_cols=61 Identities=23% Similarity=0.166 Sum_probs=39.6
Q ss_pred CCccccEEecCCCCCcccC--hhhhccccccEEeccccc--ccccccccccCCCcceEEEcCCce
Q 046764 607 DLKHLRHLDLSETDIQILP--ESVNTLYNLRMLMLQKCN--QLEKMCSDMGNLLKLHHLDNFDFC 667 (1113)
Q Consensus 607 ~L~~Lr~L~Ls~~~i~~LP--~~i~~L~~L~~LdL~~c~--~l~~LP~~i~~L~~L~~L~L~~~~ 667 (1113)
++++||...|.++.+...+ +....|++++.|||++|- +...+-.-...|++|+.|+++.|.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr 183 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR 183 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc
Confidence 4666777777777777665 366778888888888741 122222334577778888777764
No 30
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.07 E-value=1.1e-07 Score=103.56 Aligned_cols=99 Identities=21% Similarity=0.219 Sum_probs=74.5
Q ss_pred cccCCCCCeeEEccCCcC-------CCCCCccccEEecCC-CCCcccCh-hhhccccccEEecccccccccc-cccccCC
Q 046764 586 EPFFEFENLQTFLPTTVS-------HGGDLKHLRHLDLSE-TDIQILPE-SVNTLYNLRMLMLQKCNQLEKM-CSDMGNL 655 (1113)
Q Consensus 586 ~~~~~l~~Lr~L~~~~~~-------~i~~L~~Lr~L~Ls~-~~i~~LP~-~i~~L~~L~~LdL~~c~~l~~L-P~~i~~L 655 (1113)
..|..+++||.|.++.+. .|..+..|-.|-+-+ |+|+.+|+ .|++|..|+.|.+.-| .+.-+ ...+..|
T Consensus 85 ~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan-~i~Cir~~al~dL 163 (498)
T KOG4237|consen 85 GAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN-HINCIRQDALRDL 163 (498)
T ss_pred hhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh-hhcchhHHHHHHh
Confidence 457789999999998876 788888888776655 89999985 6899999999999875 44444 4567899
Q ss_pred CcceEEEcCCceecccccccccccc-ccccc
Q 046764 656 LKLHHLDNFDFCCWKDIDSALQELK-LLHLH 685 (1113)
Q Consensus 656 ~~L~~L~L~~~~i~~~~~~~l~~L~-L~~L~ 685 (1113)
++|..|.+.+|.+.......+..+. +..+.
T Consensus 164 ~~l~lLslyDn~~q~i~~~tf~~l~~i~tlh 194 (498)
T KOG4237|consen 164 PSLSLLSLYDNKIQSICKGTFQGLAAIKTLH 194 (498)
T ss_pred hhcchhcccchhhhhhccccccchhccchHh
Confidence 9999999998866443333455555 44443
No 31
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=3e-07 Score=96.58 Aligned_cols=180 Identities=23% Similarity=0.256 Sum_probs=113.6
Q ss_pred cccEEecCCCCCc--ccChhhhccccccEEecccccccccccccccCCCcceEEEcCCceeccccccccccccccccccc
Q 046764 610 HLRHLDLSETDIQ--ILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNFDFCCWKDIDSALQELKLLHLHGA 687 (1113)
Q Consensus 610 ~Lr~L~Ls~~~i~--~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~~~~i~~~~~~~l~~L~L~~L~g~ 687 (1113)
.|++||||++.|+ .+-.-++.+.+|+.|.|.+...-..+-..|.+=.+|+.|+++.|.- +
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG-------~----------- 247 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSG-------F----------- 247 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccc-------c-----------
Confidence 5899999999887 4556678888999999988654455556778888999999887611 0
Q ss_pred eeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCCCCCcceEEEeccCccccccCccccc
Q 046764 688 LEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGETLRFENMQERE 767 (1113)
Q Consensus 688 L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~L~~~~~~~~l~~L~~L~ 767 (1113)
...+....+.+++.|.+|+++||..+.+. .......+ .++|..|+|+||.....-+.+..|.
T Consensus 248 -----------t~n~~~ll~~scs~L~~LNlsWc~l~~~~-----Vtv~V~hi--se~l~~LNlsG~rrnl~~sh~~tL~ 309 (419)
T KOG2120|consen 248 -----------TENALQLLLSSCSRLDELNLSWCFLFTEK-----VTVAVAHI--SETLTQLNLSGYRRNLQKSHLSTLV 309 (419)
T ss_pred -----------chhHHHHHHHhhhhHhhcCchHhhccchh-----hhHHHhhh--chhhhhhhhhhhHhhhhhhHHHHHH
Confidence 11122334678899999999999743321 11112222 3578889999876433112222221
Q ss_pred ccccCCCcccceEecCCCCCCCCCcceeeccccCcCcccccCCCCcccccCCCccEEEEecCcCcccccCC------CCC
Q 046764 768 DWIPYSSSQEVEFYGNGCLIPFPSLETLRFENMQEREDWIPYSSSQEVEVFPNLRDLFLLRCSKLLGTLPK------HLP 841 (1113)
Q Consensus 768 ~~Lpl~~l~~~~~~g~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~lp~------~l~ 841 (1113)
...|+|..|+|+++..+..-. ...+..|+.|++|.++.|..+ +|. ..|
T Consensus 310 -------------------~rcp~l~~LDLSD~v~l~~~~----~~~~~kf~~L~~lSlsRCY~i---~p~~~~~l~s~p 363 (419)
T KOG2120|consen 310 -------------------RRCPNLVHLDLSDSVMLKNDC----FQEFFKFNYLQHLSLSRCYDI---IPETLLELNSKP 363 (419)
T ss_pred -------------------HhCCceeeeccccccccCchH----HHHHHhcchheeeehhhhcCC---ChHHeeeeccCc
Confidence 346778888888776665411 123456778888888887432 232 455
Q ss_pred CccEEEEecc
Q 046764 842 SLQKLVIQRC 851 (1113)
Q Consensus 842 ~L~~L~L~~c 851 (1113)
+|.+|++.+|
T Consensus 364 sl~yLdv~g~ 373 (419)
T KOG2120|consen 364 SLVYLDVFGC 373 (419)
T ss_pred ceEEEEeccc
Confidence 6666666555
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=5.9e-07 Score=99.40 Aligned_cols=197 Identities=22% Similarity=0.240 Sum_probs=105.1
Q ss_pred ccCCCccEEEEecCcCcccccC-----CCCCCccEEEEeccc-----CccccCCCCCcccEEEEeccCCCCcccCCCccc
Q 046764 816 EVFPNLRDLFLLRCSKLLGTLP-----KHLPSLQKLVIQRCE-----KLLVDLPSLPSLNELKLGGCKKGGLQKGQPIIG 885 (1113)
Q Consensus 816 ~~~~~L~~L~L~~c~~L~~~lp-----~~l~~L~~L~L~~c~-----~L~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~ 885 (1113)
..+.+|+++.|.+|+ .. ..+ ..+|+++.|+++.+- .+......||+|+.|+|+.|.......
T Consensus 118 sn~kkL~~IsLdn~~-V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~------ 189 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR-VE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS------ 189 (505)
T ss_pred hhHHhhhheeecCcc-cc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc------
Confidence 467778888888773 32 222 256666666666551 111123346666666666665443111
Q ss_pred cccccccCCCCCCcccccccCCCCCcCcccCCCCCCceEEEcccCCCcccccccCCCCCcccCCCCccEEEeecCCCCcc
Q 046764 886 RRIHYGCADTSSSLRVCLQCCNSLTNNARVQLPLSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHILSCPSPTS 965 (1113)
Q Consensus 886 l~l~~~~~~~l~~L~~L~~~~N~L~~~~~l~~l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~c~~L~~ 965 (1113)
...-..+++|+.|.++.|. +..- ... . +...+|+|+.|++.++..+..
T Consensus 190 --------------------------s~~~~~l~~lK~L~l~~CG-ls~k-~V~---~-~~~~fPsl~~L~L~~N~~~~~ 237 (505)
T KOG3207|consen 190 --------------------------SNTTLLLSHLKQLVLNSCG-LSWK-DVQ---W-ILLTFPSLEVLYLEANEIILI 237 (505)
T ss_pred --------------------------ccchhhhhhhheEEeccCC-CCHH-HHH---H-HHHhCCcHHHhhhhcccccce
Confidence 0111246677777777775 3211 000 0 112567777777776642221
Q ss_pred cCCCCCcCCccCeEEEcccccccc--ccccCCCCCCCeEEEEecCCCcccc--CCC--------CCCccEEEEeecCCCC
Q 046764 966 IFSENELPATLQRLEVNSCSKLAL--LTLSGNLPQGPKYLELTSCSKWESI--ADN--------NTSLQVITVFRCKNLK 1033 (1113)
Q Consensus 966 ll~~~~l~~sL~~L~i~~c~~L~~--l~l~~~lp~~L~~L~L~~c~~L~~l--p~~--------l~sL~~L~Ls~c~~l~ 1033 (1113)
--.....+..|++|++++...+.. +...+++|. |+.|+++.| .+.++ |+. +++|++|+++.|+ +.
T Consensus 238 ~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~-L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~ 314 (505)
T KOG3207|consen 238 KATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPG-LNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENN-IR 314 (505)
T ss_pred ecchhhhhhHHhhccccCCcccccccccccccccc-hhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCc-cc
Confidence 011122334677777766543322 233445666 777777765 33332 111 7888999988865 43
Q ss_pred ccc--ccCCCCCCcCeeee-ccccc
Q 046764 1034 TLP--DGLHKLNNLQAFTI-CKNLV 1055 (1113)
Q Consensus 1034 ~lP--~~l~~L~sL~~L~L-cn~L~ 1055 (1113)
..+ ..+..+.+|+.|.+ |+.+.
T Consensus 315 ~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 315 DWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cccccchhhccchhhhhhccccccc
Confidence 332 45667778888887 76665
No 33
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.96 E-value=8.2e-06 Score=67.86 Aligned_cols=58 Identities=33% Similarity=0.414 Sum_probs=51.0
Q ss_pred ccccEEecCCCCCcccC-hhhhccccccEEecccccccccccc-cccCCCcceEEEcCCce
Q 046764 609 KHLRHLDLSETDIQILP-ESVNTLYNLRMLMLQKCNQLEKMCS-DMGNLLKLHHLDNFDFC 667 (1113)
Q Consensus 609 ~~Lr~L~Ls~~~i~~LP-~~i~~L~~L~~LdL~~c~~l~~LP~-~i~~L~~L~~L~L~~~~ 667 (1113)
++|++|++++|+++.+| ..|.++++|++|++++ +.+..+|. .+.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCCc
Confidence 47899999999999997 5789999999999997 56777775 67999999999999874
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.90 E-value=3.4e-06 Score=85.71 Aligned_cols=77 Identities=25% Similarity=0.250 Sum_probs=20.6
Q ss_pred CCCCeeEEccCCcC-----CCC-CCccccEEecCCCCCcccChhhhccccccEEecccccccccccccc-cCCCcceEEE
Q 046764 590 EFENLQTFLPTTVS-----HGG-DLKHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCSDM-GNLLKLHHLD 662 (1113)
Q Consensus 590 ~l~~Lr~L~~~~~~-----~i~-~L~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i-~~L~~L~~L~ 662 (1113)
++.++|.|.+.++. .++ .+.+|+.|+|++|.|+.++ .+..|++|++|++++ +.+..++.++ ..+++|++|+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--S-S---S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCC-CCCCccccchHHhCCcCCEEE
Confidence 34445555555543 333 3556666666666666664 366666666666666 4555555444 3466666666
Q ss_pred cCCcee
Q 046764 663 NFDFCC 668 (1113)
Q Consensus 663 L~~~~i 668 (1113)
+++|.+
T Consensus 95 L~~N~I 100 (175)
T PF14580_consen 95 LSNNKI 100 (175)
T ss_dssp -TTS--
T ss_pred CcCCcC
Confidence 666644
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.89 E-value=9e-06 Score=82.62 Aligned_cols=132 Identities=22% Similarity=0.237 Sum_probs=41.1
Q ss_pred CCCCccccEEecCCCCCcccChhhh-ccccccEEecccccccccccccccCCCcceEEEcCCceecccccccc-cccc-c
Q 046764 605 GGDLKHLRHLDLSETDIQILPESVN-TLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNFDFCCWKDIDSAL-QELK-L 681 (1113)
Q Consensus 605 i~~L~~Lr~L~Ls~~~i~~LP~~i~-~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~~~~i~~~~~~~l-~~L~-L 681 (1113)
+.+..++|.|+|++|.|+.+. .++ .|.+|+.|||++ +.+..++ ++..|++|++|++++|.+....+ .+ ..++ |
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~-N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~-~l~~~lp~L 90 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSN-NQITKLE-GLPGLPRLKTLDLSNNRISSISE-GLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TT-S--S--T-T----TT--EEE--SS---S-CH-HHHHH-TT-
T ss_pred ccccccccccccccccccccc-chhhhhcCCCEEECCC-CCCcccc-CccChhhhhhcccCCCCCCcccc-chHHhCCcC
Confidence 445567899999999988874 465 588899999998 4677775 58888999999999987754322 22 2344 4
Q ss_pred cccccceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCCCCCcceEEEec
Q 046764 682 LHLHGALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKPHQNLERFCISG 753 (1113)
Q Consensus 682 ~~L~g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~L~~ 753 (1113)
..|. +.-+.+.++... ..+..+++|+.|++..|..... .......+..+++|+.|+-..
T Consensus 91 ~~L~--L~~N~I~~l~~l-----~~L~~l~~L~~L~L~~NPv~~~------~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 91 QELY--LSNNKISDLNEL-----EPLSSLPKLRVLSLEGNPVCEK------KNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -EEE---TTS---SCCCC-----GGGGG-TT--EEE-TT-GGGGS------TTHHHHHHHH-TT-SEETTEE
T ss_pred CEEE--CcCCcCCChHHh-----HHHHcCCCcceeeccCCcccch------hhHHHHHHHHcChhheeCCEE
Confidence 4443 222223333222 2567788899999887763221 111222334466777776544
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.73 E-value=5.9e-06 Score=89.39 Aligned_cols=144 Identities=24% Similarity=0.314 Sum_probs=76.6
Q ss_pred cCCCcccceEEeeecCCCCCCCCchhhHhhhccCCCCCCcceEEEeccCccccccCcccccccccCCCcccceEecCCCC
Q 046764 707 LNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGETLRFENMQEREDWIPYSSSQEVEFYGNGCL 786 (1113)
Q Consensus 707 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~L~~~~~~~~l~~L~~L~~~Lpl~~l~~~~~~g~~~l 786 (1113)
....+.|+.+....|..... .....-..++.++.|+.+.+..+.... ...+-+. ..+
T Consensus 153 ~~~~~~Lrv~i~~rNrlen~-----ga~~~A~~~~~~~~leevr~~qN~I~~--eG~~al~----------------eal 209 (382)
T KOG1909|consen 153 AASKPKLRVFICGRNRLENG-----GATALAEAFQSHPTLEEVRLSQNGIRP--EGVTALA----------------EAL 209 (382)
T ss_pred cCCCcceEEEEeeccccccc-----cHHHHHHHHHhccccceEEEecccccC--chhHHHH----------------HHH
Confidence 44556777777766652211 112233344555677777766533211 0000000 223
Q ss_pred CCCCCcceeeccccCcCcccccCCCCcccccCCCccEEEEecCcCccc--------ccCCCCCCccEEEEecccCcc---
Q 046764 787 IPFPSLETLRFENMQEREDWIPYSSSQEVEVFPNLRDLFLLRCSKLLG--------TLPKHLPSLQKLVIQRCEKLL--- 855 (1113)
Q Consensus 787 ~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~--------~lp~~l~~L~~L~L~~c~~L~--- 855 (1113)
..+|+|+.|+|.+..--..-.. ........+|+|+.|++++| .++. .+-...|+|+.|.+.+|..-.
T Consensus 210 ~~~~~LevLdl~DNtft~egs~-~LakaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~ 287 (382)
T KOG1909|consen 210 EHCPHLEVLDLRDNTFTLEGSV-ALAKALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAA 287 (382)
T ss_pred HhCCcceeeecccchhhhHHHH-HHHHHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHH
Confidence 4567788888876432111000 01223456778888888888 5542 223457788888888774221
Q ss_pred ----ccCCCCCcccEEEEeccCCC
Q 046764 856 ----VDLPSLPSLNELKLGGCKKG 875 (1113)
Q Consensus 856 ----~~l~~l~~L~~L~L~~~~~~ 875 (1113)
..+...|.|+.|+|++|...
T Consensus 288 ~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 288 LALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHHHHhcchhhHHhcCCccccc
Confidence 23334778888888888763
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.67 E-value=9.5e-06 Score=85.41 Aligned_cols=143 Identities=17% Similarity=0.164 Sum_probs=86.4
Q ss_pred CCCCCcceeeccccCc--CcccccCCCCcccccCCCccEEEEecCcCcccccCCCCCCccEEEEec------ccCccccC
Q 046764 787 IPFPSLETLRFENMQE--REDWIPYSSSQEVEVFPNLRDLFLLRCSKLLGTLPKHLPSLQKLVIQR------CEKLLVDL 858 (1113)
Q Consensus 787 ~~~~~L~~L~L~~~~~--l~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~lp~~l~~L~~L~L~~------c~~L~~~l 858 (1113)
..|.+|+.+.++.|.. +..+. ..=|.|+++.+.+. ... ..|.-+|.=..-+..+ .+.+...+
T Consensus 211 ~~f~~l~~~~~s~~~~~~i~~~~--------~~kptl~t~~v~~s-~~~-~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~ 280 (490)
T KOG1259|consen 211 NAFRNLKTLKFSALSTENIVDIE--------LLKPTLQTICVHNT-TIQ-DVPSLLPETILADPSGSEPSTSNGSALVSA 280 (490)
T ss_pred HHhhhhheeeeeccchhheecee--------ecCchhheeeeecc-ccc-ccccccchhhhcCccCCCCCccCCceEEec
Confidence 4477788888877642 22211 23467777777654 222 2222222211122211 12233355
Q ss_pred CCCCcccEEEEeccCCCCcccCCCccccccccccCCCCCCcccccccCCCCCcCcccCCCCCCceEEEcccCCCcccccc
Q 046764 859 PSLPSLNELKLGGCKKGGLQKGQPIIGRRIHYGCADTSSSLRVCLQCCNSLTNNARVQLPLSLKDLSIAFCDNLRTLVEE 938 (1113)
Q Consensus 859 ~~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~~l~~L~~L~~~~N~L~~~~~l~~l~~L~~L~Ls~c~~L~~l~~~ 938 (1113)
+....|++|++++|.+..+. +.+.-.|.++.|+++.|.+.....++.+++|+.|++++|. |..+ ..
T Consensus 281 dTWq~LtelDLS~N~I~~iD------------ESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~-Ls~~-~G 346 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQID------------ESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNL-LAEC-VG 346 (490)
T ss_pred chHhhhhhccccccchhhhh------------hhhhhccceeEEeccccceeeehhhhhcccceEeecccch-hHhh-hh
Confidence 66788899999988776532 4566678888888888888866668888899999988875 5544 11
Q ss_pred cCCCCCcccCCCCccEEEeec
Q 046764 939 EGIPKGSRKYSSHLECLHILS 959 (1113)
Q Consensus 939 ~~lp~~l~~~l~~L~~L~L~~ 959 (1113)
|+..+-+.++|.+++
T Consensus 347 ------wh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 347 ------WHLKLGNIKTLKLAQ 361 (490)
T ss_pred ------hHhhhcCEeeeehhh
Confidence 223567777777655
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.66 E-value=8.3e-06 Score=85.85 Aligned_cols=59 Identities=29% Similarity=0.314 Sum_probs=50.2
Q ss_pred CccccEEecCCCCCcccChhhhccccccEEecccccccccccccccCCCcceEEEcCCcee
Q 046764 608 LKHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNFDFCC 668 (1113)
Q Consensus 608 L~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~~~~i 668 (1113)
-..|..||||+|.|+.+.+++.-++.++.|++++| .+..+-. +..|++|++||+++|.+
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS~N~L 341 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTVQN-LAELPQLQLLDLSGNLL 341 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEecccc-ceeeehh-hhhcccceEeecccchh
Confidence 45688999999999999999999999999999994 5666543 78899999999998854
No 39
>PLN03150 hypothetical protein; Provisional
Probab=97.56 E-value=7.3e-05 Score=92.56 Aligned_cols=75 Identities=23% Similarity=0.281 Sum_probs=59.5
Q ss_pred CCCCCccccEEecCCCCCc-ccChhhhccccccEEecccccccccccccccCCCcceEEEcCCceecccccccccc
Q 046764 604 HGGDLKHLRHLDLSETDIQ-ILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNFDFCCWKDIDSALQE 678 (1113)
Q Consensus 604 ~i~~L~~Lr~L~Ls~~~i~-~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~~~~i~~~~~~~l~~ 678 (1113)
.++++++|++|+|++|.+. .+|..++.+++|++|+|++|.....+|..+++|++|++|++++|.+.+..|..+..
T Consensus 437 ~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 437 DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGG 512 (623)
T ss_pred HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhh
Confidence 5678888888888888887 67888888888888888887666678888888888888888888776666655543
No 40
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.56 E-value=7.3e-05 Score=57.26 Aligned_cols=40 Identities=35% Similarity=0.505 Sum_probs=31.9
Q ss_pred ccccEEecCCCCCcccChhhhccccccEEeccccccccccc
Q 046764 609 KHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMC 649 (1113)
Q Consensus 609 ~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP 649 (1113)
++|++|+|++|+|+.+|..+++|++|++|++++| .+..+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 4789999999999999888999999999999985 566554
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.46 E-value=0.00012 Score=60.77 Aligned_cols=57 Identities=25% Similarity=0.447 Sum_probs=45.5
Q ss_pred CCccEEEEeecCCCCccc-ccCCCCCCcCeeee-ccccccccCCCC-CCCCcCcEEEeCCC
Q 046764 1019 TSLQVITVFRCKNLKTLP-DGLHKLNNLQAFTI-CKNLVSFPKGGL-PSTQLRDPDITGCQ 1076 (1113)
Q Consensus 1019 ~sL~~L~Ls~c~~l~~lP-~~l~~L~sL~~L~L-cn~L~slp~~~~-~~~sL~~L~l~~C~ 1076 (1113)
|+|++|++++| .++.+| ..+.++++|++|++ +|.+..++.+.+ .+++|++|++++|+
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 57888888886 677886 46788899999999 888888887654 66788888888864
No 42
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.27 E-value=1.6e-05 Score=90.98 Aligned_cols=65 Identities=18% Similarity=0.322 Sum_probs=36.9
Q ss_pred CccccCCC--CCCccEEEEeecCCCCcccccCCCCCCcCeeee-ccccccccCCCCC---CCCcCcEEEeCC
Q 046764 1010 KWESIADN--NTSLQVITVFRCKNLKTLPDGLHKLNNLQAFTI-CKNLVSFPKGGLP---STQLRDPDITGC 1075 (1113)
Q Consensus 1010 ~L~~lp~~--l~sL~~L~Ls~c~~l~~lP~~l~~L~sL~~L~L-cn~L~slp~~~~~---~~sL~~L~l~~C 1075 (1113)
.+..+|.. .-.|..||+| |+++..||-.+.+++.|++|.| ||-|++=|..... ..=-++|++.-|
T Consensus 200 ~l~~lp~El~~LpLi~lDfS-cNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 200 HLEDLPEELCSLPLIRLDFS-CNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhCCHHHhCCceeeeecc-cCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 44455544 2345666666 3566777777777777777777 7777665432211 012345566666
No 43
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.22 E-value=1.9e-05 Score=90.27 Aligned_cols=78 Identities=31% Similarity=0.422 Sum_probs=57.8
Q ss_pred CCCCCccccEEecCCCCCcccChhhhccccccEEecccccccccccccccCCCcceEEEcCCceecccccccccccc-cc
Q 046764 604 HGGDLKHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNFDFCCWKDIDSALQELK-LL 682 (1113)
Q Consensus 604 ~i~~L~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~~~~i~~~~~~~l~~L~-L~ 682 (1113)
.++++..|.||||+.|++..+|..++.| -|+.|.+++ ++++.+|.+|+-+..|.+||.+.|.+ ...|..+..|. ++
T Consensus 116 ~i~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~nei-~slpsql~~l~slr 192 (722)
T KOG0532|consen 116 AICNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKNEI-QSLPSQLGYLTSLR 192 (722)
T ss_pred hhhhhhHHHHhhhccchhhcCChhhhcC-cceeEEEec-CccccCCcccccchhHHHhhhhhhhh-hhchHHhhhHHHHH
Confidence 6777888888888888888888888877 478888886 57788888888778888888887765 33455555555 44
Q ss_pred cc
Q 046764 683 HL 684 (1113)
Q Consensus 683 ~L 684 (1113)
.|
T Consensus 193 ~l 194 (722)
T KOG0532|consen 193 DL 194 (722)
T ss_pred HH
Confidence 44
No 44
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.16 E-value=0.0048 Score=68.37 Aligned_cols=109 Identities=15% Similarity=0.123 Sum_probs=69.5
Q ss_pred cCcEEEEEEecCCCCChhhhhhhccccc---CCCCCcEEEEecCChhhHhhhC----------CCceEecCCCCHHHHHH
Q 046764 377 SGKKFLLVLGDVWNENYSDWDSLSLPFE---AGAPGSQIIVTTRNRDVAAIMG----------SVRDYPLKESTKDDCLQ 443 (1113)
Q Consensus 377 ~~kr~LiVLDDv~~~~~~~w~~l~~~l~---~~~~gSrIivTTR~~~va~~~~----------~~~~~~l~~L~~~~s~~ 443 (1113)
.+++++||+||+|..+...++.+..... .......|++|... +...... ....+++++++.+|...
T Consensus 121 ~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~-~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~ 199 (269)
T TIGR03015 121 AGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQP-EFRETLQSPQLQQLRQRIIASCHLGPLDREETRE 199 (269)
T ss_pred CCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCH-HHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHH
Confidence 6788999999999986566666543221 11223345555543 2221111 12467899999999999
Q ss_pred HHHhcccCCCCCCCchhHHHHHHHHHHHhCCChHHHHHHHhhh
Q 046764 444 VFTQHCLGMRDFSMQQSLKDISKKIVIRCNGLPLAAKTLAGLL 486 (1113)
Q Consensus 444 LF~~~af~~~~~~~~~~l~~i~~~I~~~c~GlPLAi~~ig~~L 486 (1113)
++...+-..+......--.+..+.|++.|+|.|..|..++..+
T Consensus 200 ~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 200 YIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 8887653222111111124788999999999999998887765
No 45
>PLN03150 hypothetical protein; Provisional
Probab=97.10 E-value=0.00058 Score=84.70 Aligned_cols=71 Identities=18% Similarity=0.274 Sum_probs=60.3
Q ss_pred cccEEecCCCCCc-ccChhhhccccccEEecccccccccccccccCCCcceEEEcCCceecccccccccccc
Q 046764 610 HLRHLDLSETDIQ-ILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNFDFCCWKDIDSALQELK 680 (1113)
Q Consensus 610 ~Lr~L~Ls~~~i~-~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~~~~i~~~~~~~l~~L~ 680 (1113)
.++.|+|++|.+. .+|..|++|++|++|+|++|.....+|..++++++|++|++++|.+....|..+.+|.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~ 490 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCC
Confidence 4788999999997 6799999999999999999766679999999999999999999977665555554444
No 46
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.09 E-value=9.7e-05 Score=80.23 Aligned_cols=238 Identities=18% Similarity=0.115 Sum_probs=127.1
Q ss_pred CCCeeEEccCCcC-----------CCCCCccccEEecCCC---C-CcccChh-------hhccccccEEecccccccccc
Q 046764 591 FENLQTFLPTTVS-----------HGGDLKHLRHLDLSET---D-IQILPES-------VNTLYNLRMLMLQKCNQLEKM 648 (1113)
Q Consensus 591 l~~Lr~L~~~~~~-----------~i~~L~~Lr~L~Ls~~---~-i~~LP~~-------i~~L~~L~~LdL~~c~~l~~L 648 (1113)
...+..+.++++. .+.+.+.||.-++|+- + ..++|+. +-..++|++||||.|-.-..-
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 3445555555554 4455667777777653 1 2244543 334457777887775332222
Q ss_pred cc----cccCCCcceEEEcCCceecccccccccc-cc-ccccc-----cceeeccccCcc---ChhhHHHhhcCCCcccc
Q 046764 649 CS----DMGNLLKLHHLDNFDFCCWKDIDSALQE-LK-LLHLH-----GALEISKLENVR---DASEAGEAQLNGKKNLK 714 (1113)
Q Consensus 649 P~----~i~~L~~L~~L~L~~~~i~~~~~~~l~~-L~-L~~L~-----g~L~i~~l~~~~---~~~~~~~~~l~~l~~L~ 714 (1113)
+. -|...+.|++|.+.+|.++...+..++. |. +.... -.+.+..+.+.. .........++..+.|+
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE 188 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence 22 2345677888888777554443333221 11 00000 011111111111 12233444577778999
Q ss_pred eEEeeecCCCCCCCCchhhHhhhccCCCCCCcceEEEeccCccccccCcccccccccCCCcccceEecCCCCCCCCCcce
Q 046764 715 TLLLQRTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGETLRFENMQEREDWIPYSSSQEVEFYGNGCLIPFPSLET 794 (1113)
Q Consensus 715 ~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~L~~~~~~~~l~~L~~L~~~Lpl~~l~~~~~~g~~~l~~~~~L~~ 794 (1113)
.+.++.|..... ........+..+++|+.|+|..+..+. .--..|. ..+..+|+|+.
T Consensus 189 evr~~qN~I~~e-----G~~al~eal~~~~~LevLdl~DNtft~--egs~~La----------------kaL~s~~~L~E 245 (382)
T KOG1909|consen 189 EVRLSQNGIRPE-----GVTALAEALEHCPHLEVLDLRDNTFTL--EGSVALA----------------KALSSWPHLRE 245 (382)
T ss_pred eEEEecccccCc-----hhHHHHHHHHhCCcceeeecccchhhh--HHHHHHH----------------HHhcccchhee
Confidence 999988863221 223456778889999999998753221 0000000 23455789999
Q ss_pred eeccccCcCcccccCCCCcccccCCCccEEEEecCcCccc----cc---CCCCCCccEEEEeccc
Q 046764 795 LRFENMQEREDWIPYSSSQEVEVFPNLRDLFLLRCSKLLG----TL---PKHLPSLQKLVIQRCE 852 (1113)
Q Consensus 795 L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~----~l---p~~l~~L~~L~L~~c~ 852 (1113)
|.+.+|.--..-.......-...+|+|+.|.+.+| .++. .+ -...|.|+.|.+++|.
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred ecccccccccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 99998842211100000111235899999999998 3431 00 1247899999999984
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=4.3e-05 Score=80.81 Aligned_cols=145 Identities=22% Similarity=0.161 Sum_probs=87.7
Q ss_pred hHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCCCCCcceEEEeccCccccccCcccccccccCCCcccceE
Q 046764 701 EAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGETLRFENMQEREDWIPYSSSQEVEF 780 (1113)
Q Consensus 701 ~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~L~~~~~~~~l~~L~~L~~~Lpl~~l~~~~~ 780 (1113)
+-+...+.+-.+|+.|+++.++... .. ..---+..++.|..|+|+||...... .+-+-
T Consensus 224 D~I~~~iAkN~~L~~lnlsm~sG~t-----~n--~~~ll~~scs~L~~LNlsWc~l~~~~--Vtv~V------------- 281 (419)
T KOG2120|consen 224 DPIVNTIAKNSNLVRLNLSMCSGFT-----EN--ALQLLLSSCSRLDELNLSWCFLFTEK--VTVAV------------- 281 (419)
T ss_pred cHHHHHHhccccceeeccccccccc-----hh--HHHHHHHhhhhHhhcCchHhhccchh--hhHHH-------------
Confidence 3344457777889999998775211 11 11122455778889999998654300 00000
Q ss_pred ecCCCCCCCCCcceeeccccCcCcccccCCCCcccccCCCccEEEEecCcCcccccC---CCCCCccEEEEecccCcc--
Q 046764 781 YGNGCLIPFPSLETLRFENMQEREDWIPYSSSQEVEVFPNLRDLFLLRCSKLLGTLP---KHLPSLQKLVIQRCEKLL-- 855 (1113)
Q Consensus 781 ~g~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~lp---~~l~~L~~L~L~~c~~L~-- 855 (1113)
. .--++|+.|.|+++...-.... ...-...+|+|..|+|++|..++.... -.|+.|++|.++.|-.+.
T Consensus 282 ---~--hise~l~~LNlsG~rrnl~~sh--~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~ 354 (419)
T KOG2120|consen 282 ---A--HISETLTQLNLSGYRRNLQKSH--LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPE 354 (419)
T ss_pred ---h--hhchhhhhhhhhhhHhhhhhhH--HHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChH
Confidence 0 0125788888887742211110 111234689999999999977763211 267899999999994332
Q ss_pred --ccCCCCCcccEEEEeccCC
Q 046764 856 --VDLPSLPSLNELKLGGCKK 874 (1113)
Q Consensus 856 --~~l~~l~~L~~L~L~~~~~ 874 (1113)
..+...|+|.+|++.+|-.
T Consensus 355 ~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 355 TLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred HeeeeccCcceEEEEeccccC
Confidence 2455688999999988743
No 48
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.04 E-value=0.00042 Score=81.58 Aligned_cols=170 Identities=22% Similarity=0.285 Sum_probs=92.2
Q ss_pred CCCCcccEEEEeccCCCCcccCCCccccccccccCCCC-CCcccccccCCCCC-cCcccCCCCCCceEEEcccCCCcccc
Q 046764 859 PSLPSLNELKLGGCKKGGLQKGQPIIGRRIHYGCADTS-SSLRVCLQCCNSLT-NNARVQLPLSLKDLSIAFCDNLRTLV 936 (1113)
Q Consensus 859 ~~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~~l-~~L~~L~~~~N~L~-~~~~l~~l~~L~~L~Ls~c~~L~~l~ 936 (1113)
..++.+..|++.++......+ ....+ ++|+.|+...|++. .+..+..++.|+.|++++|+ +..+
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~------------~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l- 178 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPP------------LIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDL- 178 (394)
T ss_pred hcccceeEEecCCcccccCcc------------ccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhh-
Confidence 345678888888888776543 23334 37888888887877 44677788888888888876 5555
Q ss_pred cccCCCCCcccCCCCccEEEeecCCCCcccCCCC-CcCCccCeEEEccccccccccccCCCCCCCeEEEEecCCCccccC
Q 046764 937 EEEGIPKGSRKYSSHLECLHILSCPSPTSIFSEN-ELPATLQRLEVNSCSKLALLTLSGNLPQGPKYLELTSCSKWESIA 1015 (1113)
Q Consensus 937 ~~~~lp~~l~~~l~~L~~L~L~~c~~L~~ll~~~-~l~~sL~~L~i~~c~~L~~l~l~~~lp~~L~~L~L~~c~~L~~lp 1015 (1113)
+... ..++.|+.|+++++. +.. +|.. ..+..|++|.+.+-...+.+....+
T Consensus 179 ~~~~------~~~~~L~~L~ls~N~-i~~-l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~-------------------- 230 (394)
T COG4886 179 PKLL------SNLSNLNNLDLSGNK-ISD-LPPEIELLSALEELDLSNNSIIELLSSLSN-------------------- 230 (394)
T ss_pred hhhh------hhhhhhhheeccCCc-ccc-CchhhhhhhhhhhhhhcCCcceecchhhhh--------------------
Confidence 3221 156777888877643 333 2322 2333355555544332222221112
Q ss_pred CCCCCccEEEEeecCCCCcccccCCCCCCcCeeee-ccccccccCCCCCCCCcCcEEEeC
Q 046764 1016 DNNTSLQVITVFRCKNLKTLPDGLHKLNNLQAFTI-CKNLVSFPKGGLPSTQLRDPDITG 1074 (1113)
Q Consensus 1016 ~~l~sL~~L~Ls~c~~l~~lP~~l~~L~sL~~L~L-cn~L~slp~~~~~~~sL~~L~l~~ 1074 (1113)
+.++..|.+.+ +.+..++..+..+++|+.|++ ++.+..++. ..+..+|+.|++++
T Consensus 231 --~~~l~~l~l~~-n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~ 286 (394)
T COG4886 231 --LKNLSGLELSN-NKLEDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSG 286 (394)
T ss_pred --cccccccccCC-ceeeeccchhccccccceecccccccccccc-ccccCccCEEeccC
Confidence 33444444333 233333445555555555555 555555544 33334555555554
No 49
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.00 E-value=0.0039 Score=81.97 Aligned_cols=185 Identities=14% Similarity=0.139 Sum_probs=102.9
Q ss_pred CcEEEEEEecCCCCChhhhh-hhcccccCCCCCcEEEEecCChh---hHhhhCCCceEecC----CCCHHHHHHHHHhcc
Q 046764 378 GKKFLLVLGDVWNENYSDWD-SLSLPFEAGAPGSQIIVTTRNRD---VAAIMGSVRDYPLK----ESTKDDCLQVFTQHC 449 (1113)
Q Consensus 378 ~kr~LiVLDDv~~~~~~~w~-~l~~~l~~~~~gSrIivTTR~~~---va~~~~~~~~~~l~----~L~~~~s~~LF~~~a 449 (1113)
+.+++|||||+...+..... .+..-+.....+-++|||||... ...........++. +++.+|+..+|....
T Consensus 120 ~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~ 199 (903)
T PRK04841 120 HQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRL 199 (903)
T ss_pred CCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhcc
Confidence 67899999999765433333 33222233345678889999842 11111122345565 999999999998764
Q ss_pred cCCCCCCCchhHHHHHHHHHHHhCCChHHHHHHHhhhcCCCCc---ccccccccccccCcCCcccch----------hhH
Q 046764 450 LGMRDFSMQQSLKDISKKIVIRCNGLPLAAKTLAGLLRGKNDP---RFSACSIARYGIYQKNYEFHE----------EEE 516 (1113)
Q Consensus 450 f~~~~~~~~~~l~~i~~~I~~~c~GlPLAi~~ig~~L~~~~~~---cfly~~~~~~~~fp~~~~i~~----------~~~ 516 (1113)
+.. . -.+...+|.+.|+|.|+++..++..+...... ...-.+ -.+. ..+.. .+.
T Consensus 200 -~~~---~---~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~l~~~v~~~l~~~ 266 (903)
T PRK04841 200 -SSP---I---EAAESSRLCDDVEGWATALQLIALSARQNNSSLHDSARRLA-----GINA-SHLSDYLVEEVLDNVDLE 266 (903)
T ss_pred -CCC---C---CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCchhhhhHhhc-----CCCc-hhHHHHHHHHHHhcCCHH
Confidence 211 1 12456789999999999999888776543321 000000 0000 00000 001
Q ss_pred HHHHHHHcCCCccCCchhhH-----HHHHHHHHHHHHhCCCccc-cCCCCCceeechHHHHHHHHh
Q 046764 517 VTLLWMAEGFPYHIDTKEEI-----QDLGHKFFHELYSRSSFQQ-SSSDPCRFLMHDLINDLAQWA 576 (1113)
Q Consensus 517 Li~~Wiaegfi~~~~~~~~~-----e~~~~~~~~~Lv~rsli~~-~~~~~~~~~mHdlv~d~~~~i 576 (1113)
..+.-..-....... .... .+.+...+++|.+++++.. .+++...|+.|++++++.+..
T Consensus 267 ~~~~l~~~a~~~~~~-~~l~~~l~~~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~ 331 (903)
T PRK04841 267 TRHFLLRCSVLRSMN-DALIVRVTGEENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHR 331 (903)
T ss_pred HHHHHHHhcccccCC-HHHHHHHcCCCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHH
Confidence 111111112222211 1111 1224668999999999764 444456789999999998765
No 50
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.88 E-value=0.00078 Score=79.32 Aligned_cols=58 Identities=34% Similarity=0.426 Sum_probs=31.8
Q ss_pred cccEEecCCCCCcccChhhhccccccEEecccccccccccccccCCCcceEEEcCCcee
Q 046764 610 HLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNFDFCC 668 (1113)
Q Consensus 610 ~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~~~~i 668 (1113)
+|+.|++++|++..+|..++.+++|+.|++++ +.+..+|...+.+.+|+.|++++|.+
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~L~~L~ls~N~i 198 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSNLNNLDLSGNKI 198 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCC-chhhhhhhhhhhhhhhhheeccCCcc
Confidence 55555555555555555555555555555555 34555555444555555555555543
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.65 E-value=0.0014 Score=50.12 Aligned_cols=37 Identities=27% Similarity=0.256 Sum_probs=31.5
Q ss_pred ccccEEecccccccccccccccCCCcceEEEcCCceec
Q 046764 632 YNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNFDFCCW 669 (1113)
Q Consensus 632 ~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~~~~i~ 669 (1113)
++|++|++++ +.+..+|..+++|++|++|++++|.+.
T Consensus 1 ~~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSN-NQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETS-SS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccC-CCCcccCchHhCCCCCCEEEecCCCCC
Confidence 4799999999 588899998999999999999999664
No 52
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.44 E-value=0.00063 Score=80.45 Aligned_cols=63 Identities=29% Similarity=0.375 Sum_probs=41.4
Q ss_pred CCCCCccccEEecCCCCCcccChhhhccccccEEecccccccccccccccCCCcceEEEcCCcee
Q 046764 604 HGGDLKHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNFDFCC 668 (1113)
Q Consensus 604 ~i~~L~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~~~~i 668 (1113)
.++.+++|.+|++.+|.|..+...+..+.+|++|++++ +.+..+ .++..|+.|+.|++++|.+
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i-~~l~~l~~L~~L~l~~N~i 152 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSF-NKITKL-EGLSTLTLLKELNLSGNLI 152 (414)
T ss_pred ccccccceeeeeccccchhhcccchhhhhcchheeccc-cccccc-cchhhccchhhheeccCcc
Confidence 36667777777777777776655566777777777776 455555 3456666677777766643
No 53
>PF05729 NACHT: NACHT domain
Probab=96.34 E-value=0.011 Score=59.80 Aligned_cols=72 Identities=19% Similarity=0.229 Sum_probs=50.2
Q ss_pred cCcEEEEEEecCCCCChh-------hhhhhcc-cccC-CCCCcEEEEecCChhh---HhhhCCCceEecCCCCHHHHHHH
Q 046764 377 SGKKFLLVLGDVWNENYS-------DWDSLSL-PFEA-GAPGSQIIVTTRNRDV---AAIMGSVRDYPLKESTKDDCLQV 444 (1113)
Q Consensus 377 ~~kr~LiVLDDv~~~~~~-------~w~~l~~-~l~~-~~~gSrIivTTR~~~v---a~~~~~~~~~~l~~L~~~~s~~L 444 (1113)
+.+++++|+|++++.... .+..+.. .++. ..++.+|+||+|.... .........++++++++++..++
T Consensus 79 ~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (166)
T PF05729_consen 79 KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQY 158 (166)
T ss_pred cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHH
Confidence 578999999999765321 1222222 2222 2568999999998766 33344446899999999999999
Q ss_pred HHhc
Q 046764 445 FTQH 448 (1113)
Q Consensus 445 F~~~ 448 (1113)
+.++
T Consensus 159 ~~~~ 162 (166)
T PF05729_consen 159 LRKY 162 (166)
T ss_pred HHHH
Confidence 8776
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.30 E-value=0.0021 Score=79.66 Aligned_cols=75 Identities=28% Similarity=0.336 Sum_probs=49.6
Q ss_pred CCCCeeEEccCCcC--------CCCCCccccEEecCCCCCcccChhhhccccccEEeccccccccccc--ccccCCCcce
Q 046764 590 EFENLQTFLPTTVS--------HGGDLKHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMC--SDMGNLLKLH 659 (1113)
Q Consensus 590 ~l~~Lr~L~~~~~~--------~i~~L~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP--~~i~~L~~L~ 659 (1113)
.+|.||+|.+.+.. -..++++|+.||+|+++++.+ ..|++|++||+|.+++ -.+..-+ ..+-+|++|+
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrn-Le~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRN-LEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccC-CCCCchhhHHHHhcccCCC
Confidence 56777777776643 334677777888888777777 6777788887777765 2222211 2456677777
Q ss_pred EEEcCCc
Q 046764 660 HLDNFDF 666 (1113)
Q Consensus 660 ~L~L~~~ 666 (1113)
+||+|..
T Consensus 224 vLDIS~~ 230 (699)
T KOG3665|consen 224 VLDISRD 230 (699)
T ss_pred eeecccc
Confidence 7777753
No 55
>PRK06893 DNA replication initiation factor; Validated
Probab=96.04 E-value=0.019 Score=61.93 Aligned_cols=140 Identities=10% Similarity=0.125 Sum_probs=82.6
Q ss_pred EEEEEEeccc----chhhhcc----cccCCcCCCCCH---HHHHHHHHHHhcCcEEEEEEecCCCCC-hhhhhh-hcccc
Q 046764 337 HLLSLSIMMP----NIIRFIA----TADQPVNGTDEL---GLLQEKLKNQMSGKKFLLVLGDVWNEN-YSDWDS-LSLPF 403 (1113)
Q Consensus 337 ~vi~I~G~gG----tLA~~vi----~~~~~~~~~~~~---~~l~~~l~~~L~~kr~LiVLDDv~~~~-~~~w~~-l~~~l 403 (1113)
..+-+||..| +||+.+. ..... ....+. +.....+.+.++ +.-+|||||+|... ..+|+. +...+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~-~~y~~~~~~~~~~~~~~~~~~-~~dlLilDDi~~~~~~~~~~~~l~~l~ 117 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRT-AIYIPLSKSQYFSPAVLENLE-QQDLVCLDDLQAVIGNEEWELAIFDLF 117 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCC-eEEeeHHHhhhhhHHHHhhcc-cCCEEEEeChhhhcCChHHHHHHHHHH
Confidence 4567899998 6777771 11110 000111 111122233333 23489999998742 245653 22223
Q ss_pred cCC-CCCcEEEE-ecCC---------hhhHhhhCCCceEecCCCCHHHHHHHHHhcccCCCCCCCchhHHHHHHHHHHHh
Q 046764 404 EAG-APGSQIIV-TTRN---------RDVAAIMGSVRDYPLKESTKDDCLQVFTQHCLGMRDFSMQQSLKDISKKIVIRC 472 (1113)
Q Consensus 404 ~~~-~~gSrIiv-TTR~---------~~va~~~~~~~~~~l~~L~~~~s~~LF~~~af~~~~~~~~~~l~~i~~~I~~~c 472 (1113)
... ..|+.||| |++. ++++..+....+++++++++++.++++.+.++..+- .. -+++..-|++++
T Consensus 118 n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l-~l---~~~v~~~L~~~~ 193 (229)
T PRK06893 118 NRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGI-EL---SDEVANFLLKRL 193 (229)
T ss_pred HHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHhc
Confidence 221 23566654 4543 577888777789999999999999999999865431 11 136677888888
Q ss_pred CCChHHHHHH
Q 046764 473 NGLPLAAKTL 482 (1113)
Q Consensus 473 ~GlPLAi~~i 482 (1113)
.|-.-++..+
T Consensus 194 ~~d~r~l~~~ 203 (229)
T PRK06893 194 DRDMHTLFDA 203 (229)
T ss_pred cCCHHHHHHH
Confidence 8766555543
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.90 E-value=0.0021 Score=68.42 Aligned_cols=58 Identities=19% Similarity=0.107 Sum_probs=40.3
Q ss_pred CCccccEEecCCCCCccc---ChhhhccccccEEeccccc---ccccccccccCCCcceEEEcCCce
Q 046764 607 DLKHLRHLDLSETDIQIL---PESVNTLYNLRMLMLQKCN---QLEKMCSDMGNLLKLHHLDNFDFC 667 (1113)
Q Consensus 607 ~L~~Lr~L~Ls~~~i~~L---P~~i~~L~~L~~LdL~~c~---~l~~LP~~i~~L~~L~~L~L~~~~ 667 (1113)
...+++.|||.+|.|+.- -.-+.+|++|++|+|+.|. .++.+| ..+.+|++|-+.++.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~ 132 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTG 132 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCC
Confidence 467888899999988743 3445688899999998642 123333 356688888888763
No 57
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.89 E-value=0.00046 Score=83.45 Aligned_cols=37 Identities=24% Similarity=0.188 Sum_probs=17.7
Q ss_pred CCCcceeeccccCcCcccccCCCCcccccCCCccEEEEec
Q 046764 789 FPSLETLRFENMQEREDWIPYSSSQEVEVFPNLRDLFLLR 828 (1113)
Q Consensus 789 ~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~ 828 (1113)
.+.|+.|.+.++..+..... ......+++|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSL---DALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhH---HHHHhhCchhheecccC
Confidence 45566666665544443110 11223455566666655
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.86 E-value=0.004 Score=77.18 Aligned_cols=126 Identities=23% Similarity=0.162 Sum_probs=78.3
Q ss_pred CCeeEEccCCcC--------CC-CCCccccEEecCCCCCc--ccChhhhccccccEEecccccccccccccccCCCcceE
Q 046764 592 ENLQTFLPTTVS--------HG-GDLKHLRHLDLSETDIQ--ILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHH 660 (1113)
Q Consensus 592 ~~Lr~L~~~~~~--------~i-~~L~~Lr~L~Ls~~~i~--~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~ 660 (1113)
.+||.|.+.|.. .+ ..|+.||.|.+++-.+. ++-.-..++++|..||+|+ +++..+ .+|++|++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~-TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISG-TNISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCC-CCccCc-HHHhccccHHH
Confidence 455666665543 22 35889999999886653 3344566889999999998 577777 88999999999
Q ss_pred EEcCCceecccccccccccc-ccccccceeeccccCccCh--hhHHHhhcCCCcccceEEeeecC
Q 046764 661 LDNFDFCCWKDIDSALQELK-LLHLHGALEISKLENVRDA--SEAGEAQLNGKKNLKTLLLQRTS 722 (1113)
Q Consensus 661 L~L~~~~i~~~~~~~l~~L~-L~~L~g~L~i~~l~~~~~~--~~~~~~~l~~l~~L~~L~L~~~~ 722 (1113)
|.+.+-.+.. ...+..|- |.+|+ .|.++.-...... .......-..+++|+.|+.+++.
T Consensus 200 L~mrnLe~e~--~~~l~~LF~L~~L~-vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 200 LSMRNLEFES--YQDLIDLFNLKKLR-VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HhccCCCCCc--hhhHHHHhcccCCC-eeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 9887643321 22333444 44444 4445433332222 11112233457899999987554
No 59
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.76 E-value=0.0014 Score=77.26 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=13.4
Q ss_pred ccccEEecCCCCCcccChhhhccccccEEeccc
Q 046764 609 KHLRHLDLSETDIQILPESVNTLYNLRMLMLQK 641 (1113)
Q Consensus 609 ~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~ 641 (1113)
+.|+.|||++|+++..- .+..|.+|++|||++
T Consensus 187 ~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsy 218 (1096)
T KOG1859|consen 187 PALESLNLSHNKFTKVD-NLRRLPKLKHLDLSY 218 (1096)
T ss_pred HHhhhhccchhhhhhhH-HHHhccccccccccc
Confidence 34444444444444332 344444444444444
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.47 E-value=0.0096 Score=63.56 Aligned_cols=63 Identities=13% Similarity=-0.002 Sum_probs=39.0
Q ss_pred CCcccEEEEeccCCCCcccCCCccccccccccCCCCCCcccccccCCCCC---cCcccCCCCCCceEEEcccCCCc
Q 046764 861 LPSLNELKLGGCKKGGLQKGQPIIGRRIHYGCADTSSSLRVCLQCCNSLT---NNARVQLPLSLKDLSIAFCDNLR 933 (1113)
Q Consensus 861 l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~~l~~L~~L~~~~N~L~---~~~~l~~l~~L~~L~Ls~c~~L~ 933 (1113)
||++..+.+..|+...... ......++.+-.|.+..|++. ..+.+..+++|..|.+++++-..
T Consensus 198 Fpnv~sv~v~e~PlK~~s~----------ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESS----------EKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred cccchheeeecCcccchhh----------cccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 6777777777776544221 233444555555555655665 44566778888888888877433
No 61
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.32 E-value=0.0047 Score=73.08 Aligned_cols=79 Identities=24% Similarity=0.196 Sum_probs=57.2
Q ss_pred cCCCCCeeEEccCCcC-----C-CCCCccccEEecCCCCCcccChhhhccccccEEecccccccccccccccCCCcceEE
Q 046764 588 FFEFENLQTFLPTTVS-----H-GGDLKHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHL 661 (1113)
Q Consensus 588 ~~~l~~Lr~L~~~~~~-----~-i~~L~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L 661 (1113)
+..++++..+.+.++. . +..+.+|++|+|++|.|+.+. .+..|..|+.|++++ +.+..++ ++..+.+|+.+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~-N~i~~~~-~~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSG-NLISDIS-GLESLKSLKLL 167 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheecc-Ccchhcc-CCccchhhhcc
Confidence 5566777777776665 4 667888888888888888773 467777788888888 4566553 45568888888
Q ss_pred EcCCceec
Q 046764 662 DNFDFCCW 669 (1113)
Q Consensus 662 ~L~~~~i~ 669 (1113)
++++|.+.
T Consensus 168 ~l~~n~i~ 175 (414)
T KOG0531|consen 168 DLSYNRIV 175 (414)
T ss_pred cCCcchhh
Confidence 88877553
No 62
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.07 E-value=0.094 Score=61.92 Aligned_cols=144 Identities=19% Similarity=0.212 Sum_probs=82.9
Q ss_pred eEEEEEEeccc----chhhhcccc--------cCCcCCCCCHHHHHHHHHHHh-cCcEEEEEEecCCCCChhhhhhhccc
Q 046764 336 LHLLSLSIMMP----NIIRFIATA--------DQPVNGTDELGLLQEKLKNQM-SGKKFLLVLGDVWNENYSDWDSLSLP 402 (1113)
Q Consensus 336 ~~vi~I~G~gG----tLA~~vi~~--------~~~~~~~~~~~~l~~~l~~~L-~~kr~LiVLDDv~~~~~~~w~~l~~~ 402 (1113)
...+-++|..| |+|+.+... ........+..++.+...... .+++.+|++|+++..+..+.+.+...
T Consensus 36 ~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~ 115 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSGVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPH 115 (413)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccccHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHH
Confidence 34566899998 888888111 110011122333333333322 45788999999988765566666555
Q ss_pred ccCCCCCcEEEE--ecCChh--hHhh-hCCCceEecCCCCHHHHHHHHHhcccCCCCCCCchhHHHHHHHHHHHhCCChH
Q 046764 403 FEAGAPGSQIIV--TTRNRD--VAAI-MGSVRDYPLKESTKDDCLQVFTQHCLGMRDFSMQQSLKDISKKIVIRCNGLPL 477 (1113)
Q Consensus 403 l~~~~~gSrIiv--TTR~~~--va~~-~~~~~~~~l~~L~~~~s~~LF~~~af~~~~~~~~~~l~~i~~~I~~~c~GlPL 477 (1113)
+.. |+.++| ||.+.. +-.. .....++++++++.++.+.++.+.+-...... ..--.+....|++.|+|-+.
T Consensus 116 le~---~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~-i~i~~~al~~l~~~s~Gd~R 191 (413)
T PRK13342 116 VED---GTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGL-VELDDEALDALARLANGDAR 191 (413)
T ss_pred hhc---CcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHhCCCCHH
Confidence 432 555554 344332 1111 12226899999999999999987642211100 01124567788999999987
Q ss_pred HHHHHH
Q 046764 478 AAKTLA 483 (1113)
Q Consensus 478 Ai~~ig 483 (1113)
.+..+-
T Consensus 192 ~aln~L 197 (413)
T PRK13342 192 RALNLL 197 (413)
T ss_pred HHHHHH
Confidence 665443
No 63
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.02 E-value=0.0086 Score=38.28 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=12.1
Q ss_pred cccEEecCCCCCcccChhhhc
Q 046764 610 HLRHLDLSETDIQILPESVNT 630 (1113)
Q Consensus 610 ~Lr~L~Ls~~~i~~LP~~i~~ 630 (1113)
+|++|||++|+++.+|++|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666555543
No 64
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.58 E-value=0.0019 Score=78.02 Aligned_cols=58 Identities=31% Similarity=0.490 Sum_probs=34.0
Q ss_pred cCCCccEEEEecCcCccc----ccCCCCCCccEEEEecc-cCcc-------ccCCCCCcccEEEEeccCC
Q 046764 817 VFPNLRDLFLLRCSKLLG----TLPKHLPSLQKLVIQRC-EKLL-------VDLPSLPSLNELKLGGCKK 874 (1113)
Q Consensus 817 ~~~~L~~L~L~~c~~L~~----~lp~~l~~L~~L~L~~c-~~L~-------~~l~~l~~L~~L~L~~~~~ 874 (1113)
.+++|+.|.+.+|..+.. .+-...+.|+.|++++| .... .....+++|+.|+++.|..
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 255 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGL 255 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhc
Confidence 367777777777766552 11235677788887763 1111 1122356777777777764
No 65
>PF13173 AAA_14: AAA domain
Probab=94.23 E-value=0.058 Score=52.26 Aligned_cols=103 Identities=15% Similarity=0.147 Sum_probs=66.2
Q ss_pred EEEEEEeccc----chhhhcccccC---C--cCCCCCHHH-------HHHHHHHHhcCcEEEEEEecCCCCChhhhhhhc
Q 046764 337 HLLSLSIMMP----NIIRFIATADQ---P--VNGTDELGL-------LQEKLKNQMSGKKFLLVLGDVWNENYSDWDSLS 400 (1113)
Q Consensus 337 ~vi~I~G~gG----tLA~~vi~~~~---~--~~~~~~~~~-------l~~~l~~~L~~kr~LiVLDDv~~~~~~~w~~l~ 400 (1113)
+++.|.|..| |++++++.... . .....+... +.+.+.+....++.+|+||+|... .+|....
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~--~~~~~~l 80 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYL--PDWEDAL 80 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhh--ccHHHHH
Confidence 5788999987 88888832211 0 001111111 234444444457888999999887 6788777
Q ss_pred ccccCCCCCcEEEEecCChhhHhhh------CCCceEecCCCCHHHH
Q 046764 401 LPFEAGAPGSQIIVTTRNRDVAAIM------GSVRDYPLKESTKDDC 441 (1113)
Q Consensus 401 ~~l~~~~~gSrIivTTR~~~va~~~------~~~~~~~l~~L~~~~s 441 (1113)
..+-+..+..+|++|+........- +....+++.||+-.|.
T Consensus 81 k~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 81 KFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred HHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 7776665678999999987666331 1224689999997763
No 66
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=94.06 E-value=0.0076 Score=71.46 Aligned_cols=77 Identities=26% Similarity=0.267 Sum_probs=56.6
Q ss_pred CCCCeeEEccCCcC-----CCCCCccccEEecCCCCCcccCh-hhhccccccEEecccccccccccccccCCCcceEEEc
Q 046764 590 EFENLQTFLPTTVS-----HGGDLKHLRHLDLSETDIQILPE-SVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDN 663 (1113)
Q Consensus 590 ~l~~Lr~L~~~~~~-----~i~~L~~Lr~L~Ls~~~i~~LP~-~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L 663 (1113)
-++.+++|.+..+. .+..+.+|+.|||++|.+..+|. +...+ +|+.|+|++ +.+..+ .+|.+|.+|+.||+
T Consensus 185 ll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrn-N~l~tL-~gie~LksL~~LDl 261 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRN-NALTTL-RGIENLKSLYGLDL 261 (1096)
T ss_pred HHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeecc-cHHHhh-hhHHhhhhhhccch
Confidence 35666777776654 67788888999999998888875 22333 388888887 566666 56888888888888
Q ss_pred CCceec
Q 046764 664 FDFCCW 669 (1113)
Q Consensus 664 ~~~~i~ 669 (1113)
++|.+.
T Consensus 262 syNll~ 267 (1096)
T KOG1859|consen 262 SYNLLS 267 (1096)
T ss_pred hHhhhh
Confidence 888543
No 67
>PRK09087 hypothetical protein; Validated
Probab=93.96 E-value=0.27 Score=52.77 Aligned_cols=135 Identities=12% Similarity=0.066 Sum_probs=80.7
Q ss_pred EEEEEEeccc----chhhhcccccCCcCCCCCHHHHHHHHHHHhcCcEEEEEEecCCCC--ChhhhhhhcccccCCCCCc
Q 046764 337 HLLSLSIMMP----NIIRFIATADQPVNGTDELGLLQEKLKNQMSGKKFLLVLGDVWNE--NYSDWDSLSLPFEAGAPGS 410 (1113)
Q Consensus 337 ~vi~I~G~gG----tLA~~vi~~~~~~~~~~~~~~l~~~l~~~L~~kr~LiVLDDv~~~--~~~~w~~l~~~l~~~~~gS 410 (1113)
+.+.|||..| +|++.+..... ....+.......+...+.+ -+|++||+... +.+++-.+..... ..|.
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~--~~~i~~~~~~~~~~~~~~~--~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~ 118 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSD--ALLIHPNEIGSDAANAAAE--GPVLIEDIDAGGFDETGLFHLINSVR--QAGT 118 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcC--CEEecHHHcchHHHHhhhc--CeEEEECCCCCCCCHHHHHHHHHHHH--hCCC
Confidence 4578999988 88886632211 1112222222222223322 37888999543 1233333332222 2366
Q ss_pred EEEEecC---------ChhhHhhhCCCceEecCCCCHHHHHHHHHhcccCCCCCCCchhHHHHHHHHHHHhCCChHHHHH
Q 046764 411 QIIVTTR---------NRDVAAIMGSVRDYPLKESTKDDCLQVFTQHCLGMRDFSMQQSLKDISKKIVIRCNGLPLAAKT 481 (1113)
Q Consensus 411 rIivTTR---------~~~va~~~~~~~~~~l~~L~~~~s~~LF~~~af~~~~~~~~~~l~~i~~~I~~~c~GlPLAi~~ 481 (1113)
.||+|++ .+++..++....++++++++.++-..++.+.+-.. +...+ +++..-|++.+.|-.-++..
T Consensus 119 ~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~-~~~l~---~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 119 SLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADR-QLYVD---PHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred eEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHc-CCCCC---HHHHHHHHHHhhhhHHHHHH
Confidence 7888886 35566677777899999999999999999886332 22121 46677788888777666554
No 68
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=93.65 E-value=0.016 Score=55.17 Aligned_cols=57 Identities=16% Similarity=0.211 Sum_probs=26.3
Q ss_pred cccEEecCCCCCcccChhhhcc-ccccEEecccccccccccccccCCCcceEEEcCCce
Q 046764 610 HLRHLDLSETDIQILPESVNTL-YNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNFDFC 667 (1113)
Q Consensus 610 ~Lr~L~Ls~~~i~~LP~~i~~L-~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~~~~ 667 (1113)
+|...+|++|.++.+|+.+... +.+.+|++++ +.+..+|.++..++.|+.|+++.|.
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRFNP 111 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhcccccCc
Confidence 3444444445444444444322 2444444444 3444445444445555555544443
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.64 E-value=0.035 Score=58.88 Aligned_cols=61 Identities=26% Similarity=0.341 Sum_probs=28.6
Q ss_pred CCCCCccccEEecCCC--CCc-ccChhhhccccccEEeccccccccccccc---ccCCCcceEEEcCCc
Q 046764 604 HGGDLKHLRHLDLSET--DIQ-ILPESVNTLYNLRMLMLQKCNQLEKMCSD---MGNLLKLHHLDNFDF 666 (1113)
Q Consensus 604 ~i~~L~~Lr~L~Ls~~--~i~-~LP~~i~~L~~L~~LdL~~c~~l~~LP~~---i~~L~~L~~L~L~~~ 666 (1113)
.+-.|++|++|.+|.| ++. .++-...++++|++|++++| .++. ++. +..|.+|..|++.+|
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~-lstl~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKD-LSTLRPLKELENLKSLDLFNC 126 (260)
T ss_pred cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-cccc-ccccchhhhhcchhhhhcccC
Confidence 4445556666666665 332 33333344456666666553 3322 222 234444455555544
No 70
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=93.54 E-value=0.014 Score=55.55 Aligned_cols=88 Identities=22% Similarity=0.224 Sum_probs=69.2
Q ss_pred eechHHHHHHHHhccccCcccccccCCCCCeeEEccCCcC-------CCCCCccccEEecCCCCCcccChhhhccccccE
Q 046764 564 LMHDLINDLAQWAGDLDGIKMFEPFFEFENLQTFLPTTVS-------HGGDLKHLRHLDLSETDIQILPESVNTLYNLRM 636 (1113)
Q Consensus 564 ~mHdlv~d~~~~i~~~~~~~~~~~~~~l~~Lr~L~~~~~~-------~i~~L~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~ 636 (1113)
.|||.++.+.. ..+|....+.++. .-.+.+.+..|+|++|.|.++|.++..++.|+.
T Consensus 41 ~i~davy~l~~----------------~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 41 YIADAVYMLSK----------------GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRS 104 (177)
T ss_pred HHHHHHHHHhC----------------CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhh
Confidence 47888777553 3445555555543 223556889999999999999999999999999
Q ss_pred EecccccccccccccccCCCcceEEEcCCcee
Q 046764 637 LMLQKCNQLEKMCSDMGNLLKLHHLDNFDFCC 668 (1113)
Q Consensus 637 LdL~~c~~l~~LP~~i~~L~~L~~L~L~~~~i 668 (1113)
|+++. +.+...|.-|..|.+|-.|+..++..
T Consensus 105 lNl~~-N~l~~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 105 LNLRF-NPLNAEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred ccccc-CccccchHHHHHHHhHHHhcCCCCcc
Confidence 99998 67888999998899999999887643
No 71
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=93.07 E-value=0.42 Score=53.96 Aligned_cols=136 Identities=24% Similarity=0.313 Sum_probs=78.5
Q ss_pred eEEEEEEeccc----chhhhc----------ccccCCcCCCCCHHHHHHHH-HHHhcCcEEEEEEecCCCCChhhhhhhc
Q 046764 336 LHLLSLSIMMP----NIIRFI----------ATADQPVNGTDELGLLQEKL-KNQMSGKKFLLVLGDVWNENYSDWDSLS 400 (1113)
Q Consensus 336 ~~vi~I~G~gG----tLA~~v----------i~~~~~~~~~~~~~~l~~~l-~~~L~~kr~LiVLDDv~~~~~~~w~~l~ 400 (1113)
+.-.-.||+.| |||+.+ ++... ....++.++.+.- +....|+|.++.+|.|..-+..+-+.+.
T Consensus 48 l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~--~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lL 125 (436)
T COG2256 48 LHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT--SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALL 125 (436)
T ss_pred CceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc--ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhh
Confidence 55566899999 999988 11111 2233444444444 2335689999999999554334444443
Q ss_pred ccccCCCCCcEEEE--ecCChhhH---hhhCCCceEecCCCCHHHHHHHHHhcccCCCC-CC-CchhH-HHHHHHHHHHh
Q 046764 401 LPFEAGAPGSQIIV--TTRNRDVA---AIMGSVRDYPLKESTKDDCLQVFTQHCLGMRD-FS-MQQSL-KDISKKIVIRC 472 (1113)
Q Consensus 401 ~~l~~~~~gSrIiv--TTR~~~va---~~~~~~~~~~l~~L~~~~s~~LF~~~af~~~~-~~-~~~~l-~~i~~~I~~~c 472 (1113)
|.-..|.-|+| ||-+.... .......++++++|+.+|-.++..+-+-.... .. ....+ ++.-.-+++.+
T Consensus 126 ---p~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s 202 (436)
T COG2256 126 ---PHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLS 202 (436)
T ss_pred ---hhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhc
Confidence 33345777776 45444321 11233479999999999999988873211111 00 00111 23555677777
Q ss_pred CCCh
Q 046764 473 NGLP 476 (1113)
Q Consensus 473 ~GlP 476 (1113)
+|--
T Consensus 203 ~GD~ 206 (436)
T COG2256 203 NGDA 206 (436)
T ss_pred CchH
Confidence 7754
No 72
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=92.86 E-value=0.11 Score=52.86 Aligned_cols=55 Identities=24% Similarity=0.385 Sum_probs=29.7
Q ss_pred cccEEecCCCCCcccChhhhccccccEEeccccccccccccccc-CCCcceEEEcCCc
Q 046764 610 HLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCSDMG-NLLKLHHLDNFDF 666 (1113)
Q Consensus 610 ~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~-~L~~L~~L~L~~~ 666 (1113)
..-.+||++|++..++. +..+..|.+|.|.+ +.+..+-..+. -+++|..|.+.+|
T Consensus 43 ~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred ccceecccccchhhccc-CCCccccceEEecC-CcceeeccchhhhccccceEEecCc
Confidence 34456666666555432 45566666666665 34555544442 3445666666655
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.75 E-value=0.064 Score=34.26 Aligned_cols=22 Identities=36% Similarity=0.409 Sum_probs=16.9
Q ss_pred cccEEecccccccccccccccCC
Q 046764 633 NLRMLMLQKCNQLEKMCSDMGNL 655 (1113)
Q Consensus 633 ~L~~LdL~~c~~l~~LP~~i~~L 655 (1113)
+|++|||++| .+..+|.+|++|
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT-
T ss_pred CccEEECCCC-cCEeCChhhcCC
Confidence 5889999987 677888877654
No 74
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=92.12 E-value=0.12 Score=51.09 Aligned_cols=87 Identities=11% Similarity=0.297 Sum_probs=60.1
Q ss_pred cccccccceeeeeeecCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccchhhhhccchhhHHHhHHHHHHH
Q 046764 161 PLTAQAGLSVLTSVFDAGGFSSTDEAKQLLQVAALSNVVGYIGCLADILLNQHGKHKAADIMGRIGASAAVFGFLTMMGT 240 (1113)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~l~kl~~~l~~e~~~~~~v~~~~~~~d~~~i~~e~~~~~~ 240 (1113)
|.+.+.|++++|++|+ +.+++++.++ .+..+|=+.+..+ ....+.+..+..|++.++.
T Consensus 1 ~~~eL~~gaalG~~~~-------eLlk~v~~~~--~k~~~fk~~l~~L-------------~sTl~~i~P~i~eI~~~~~ 58 (147)
T PF05659_consen 1 PIAELVGGAALGAVFG-------ELLKAVIDAS--KKSLSFKSILKRL-------------ESTLESIIPIIKEIDKLNV 58 (147)
T ss_pred CHHHHHHHHHHHHHHH-------HHHHHHHHHH--HHHHhhhhHHHHH-------------HHHHHHhhhHHHHHHHHhh
Confidence 6788899999999999 9999999888 4444444333333 1126677777788888887
Q ss_pred HHHhc----hHHHHHHHHHHHhhccchHHHHHH
Q 046764 241 LIEVN----PAVINAVIDDAEEKQKREQSVKMW 269 (1113)
Q Consensus 241 fl~~~----l~~i~~~l~dae~~~~~~~~v~~W 269 (1113)
.+..- .+++...++++.+--.....++.|
T Consensus 59 eld~~~~ee~e~L~~~L~~g~~LV~k~sk~~r~ 91 (147)
T PF05659_consen 59 ELDRPRQEEIERLKELLEKGKELVEKCSKVRRW 91 (147)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHhccccHH
Confidence 76643 667777787777664455555533
No 75
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.03 E-value=0.062 Score=57.04 Aligned_cols=83 Identities=19% Similarity=0.215 Sum_probs=44.8
Q ss_pred CCCCccEEEEecccCcc-ccCCCCCcccEEEEeccCCCCcccCCCccccccccccCCCCCCcccccccCCCCCcC---cc
Q 046764 839 HLPSLQKLVIQRCEKLL-VDLPSLPSLNELKLGGCKKGGLQKGQPIIGRRIHYGCADTSSSLRVCLQCCNSLTNN---AR 914 (1113)
Q Consensus 839 ~l~~L~~L~L~~c~~L~-~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~~l~~L~~L~~~~N~L~~~---~~ 914 (1113)
.+..|+.|.+.++...+ ..+|.+|+|++|.+++|.......+ .-....+++|++|.++.|++... ..
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l---------~vl~e~~P~l~~l~ls~Nki~~lstl~p 111 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGL---------EVLAEKAPNLKVLNLSGNKIKDLSTLRP 111 (260)
T ss_pred cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccc---------eehhhhCCceeEEeecCCccccccccch
Confidence 44555566665554222 2667788888888888843321110 01123346666666666666522 23
Q ss_pred cCCCCCCceEEEcccC
Q 046764 915 VQLPLSLKDLSIAFCD 930 (1113)
Q Consensus 915 l~~l~~L~~L~Ls~c~ 930 (1113)
+..+.+|..|++.+|.
T Consensus 112 l~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCS 127 (260)
T ss_pred hhhhcchhhhhcccCC
Confidence 3445555566666665
No 76
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=91.79 E-value=0.53 Score=50.47 Aligned_cols=142 Identities=11% Similarity=0.132 Sum_probs=78.0
Q ss_pred EEEEEEeccc----chhhhcccccC---CcCCCCCHHHHHH---HHHHHhcCcEEEEEEecCCCCChh-hh-hhhccccc
Q 046764 337 HLLSLSIMMP----NIIRFIATADQ---PVNGTDELGLLQE---KLKNQMSGKKFLLVLGDVWNENYS-DW-DSLSLPFE 404 (1113)
Q Consensus 337 ~vi~I~G~gG----tLA~~vi~~~~---~~~~~~~~~~l~~---~l~~~L~~kr~LiVLDDv~~~~~~-~w-~~l~~~l~ 404 (1113)
..+-|+|..| ++|+.+..... ...-..+...+.. .+.+.+.+. -+||+||+...... .| +.+...+.
T Consensus 39 ~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~lLvIDdi~~l~~~~~~~~~L~~~l~ 117 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQADPEVLEGLEQA-DLVCLDDVEAIAGQPEWQEALFHLYN 117 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhHHHHHhhcccC-CEEEEeChhhhcCChHHHHHHHHHHH
Confidence 4567888888 78888722110 0000112222221 222333333 38999999765322 33 23333332
Q ss_pred C-CCCCcEEEEecCCh---------hhHhhhCCCceEecCCCCHHHHHHHHHhcccCCCCCCCchhHHHHHHHHHHHhCC
Q 046764 405 A-GAPGSQIIVTTRNR---------DVAAIMGSVRDYPLKESTKDDCLQVFTQHCLGMRDFSMQQSLKDISKKIVIRCNG 474 (1113)
Q Consensus 405 ~-~~~gSrIivTTR~~---------~va~~~~~~~~~~l~~L~~~~s~~LF~~~af~~~~~~~~~~l~~i~~~I~~~c~G 474 (1113)
. ...+.+||+||+.. ++...+.....+++.++++++-..++...+-..+ ... -.+....+++.+.|
T Consensus 118 ~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~-~~~---~~~~l~~L~~~~~g 193 (226)
T TIGR03420 118 RVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRG-LQL---PDEVADYLLRHGSR 193 (226)
T ss_pred HHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcC-CCC---CHHHHHHHHHhccC
Confidence 2 12345788888742 2333343346899999999998888876542211 111 12456777778999
Q ss_pred ChHHHHHHH
Q 046764 475 LPLAAKTLA 483 (1113)
Q Consensus 475 lPLAi~~ig 483 (1113)
.|..+..+-
T Consensus 194 n~r~L~~~l 202 (226)
T TIGR03420 194 DMGSLMALL 202 (226)
T ss_pred CHHHHHHHH
Confidence 887776553
No 77
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=91.79 E-value=1.4 Score=51.78 Aligned_cols=120 Identities=14% Similarity=0.139 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHHhc--CcEEEEEEecCCCCC----hhhhhhhcccccCCCCCcE--EEEecCChhhHhhhC-------CC
Q 046764 364 ELGLLQEKLKNQMS--GKKFLLVLGDVWNEN----YSDWDSLSLPFEAGAPGSQ--IIVTTRNRDVAAIMG-------SV 428 (1113)
Q Consensus 364 ~~~~l~~~l~~~L~--~kr~LiVLDDv~~~~----~~~w~~l~~~l~~~~~gSr--IivTTR~~~va~~~~-------~~ 428 (1113)
+.+++...+.+.+. ++..+||||+++... .+.+..+...+.. ..+++ ||.++...++..... ..
T Consensus 121 ~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~ 199 (394)
T PRK00411 121 SFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLTFLYILDPRVKSVFRP 199 (394)
T ss_pred CHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcchhhhcCHHHHhcCCc
Confidence 44566667777765 456899999997642 1223333322221 23444 566665544333211 12
Q ss_pred ceEecCCCCHHHHHHHHHhcccCC--CCCCCchhHHHHHHHHHHHhCCChHHHHHHHh
Q 046764 429 RDYPLKESTKDDCLQVFTQHCLGM--RDFSMQQSLKDISKKIVIRCNGLPLAAKTLAG 484 (1113)
Q Consensus 429 ~~~~l~~L~~~~s~~LF~~~af~~--~~~~~~~~l~~i~~~I~~~c~GlPLAi~~ig~ 484 (1113)
..+.+++++.++..+++..++-.. .....+..++.+++......|..+.|+.++-.
T Consensus 200 ~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~ 257 (394)
T PRK00411 200 EEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRR 257 (394)
T ss_pred ceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 467899999999999988775221 11112233344444444445667888877644
No 78
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=91.40 E-value=1.6 Score=49.51 Aligned_cols=137 Identities=12% Similarity=0.125 Sum_probs=83.9
Q ss_pred EEEEEEeccc----chhhhccc----c----cC-Cc-------CCCCCHHHHHHHHHH----HhcCcEEEEEEecCCCCC
Q 046764 337 HLLSLSIMMP----NIIRFIAT----A----DQ-PV-------NGTDELGLLQEKLKN----QMSGKKFLLVLGDVWNEN 392 (1113)
Q Consensus 337 ~vi~I~G~gG----tLA~~vi~----~----~~-~~-------~~~~~~~~l~~~l~~----~L~~kr~LiVLDDv~~~~ 392 (1113)
+..-++|..| |+|+.+.. . .. +. ......+++.+.+.. -..+++-++|+|++...+
T Consensus 27 ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~ 106 (313)
T PRK05564 27 HAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT 106 (313)
T ss_pred ceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcC
Confidence 5566788888 67777611 1 00 00 112234454443331 123455567778776666
Q ss_pred hhhhhhhcccccCCCCCcEEEEecCChhhH-hh-hCCCceEecCCCCHHHHHHHHHhcccCCCCCCCchhHHHHHHHHHH
Q 046764 393 YSDWDSLSLPFEAGAPGSQIIVTTRNRDVA-AI-MGSVRDYPLKESTKDDCLQVFTQHCLGMRDFSMQQSLKDISKKIVI 470 (1113)
Q Consensus 393 ~~~w~~l~~~l~~~~~gSrIivTTR~~~va-~~-~~~~~~~~l~~L~~~~s~~LF~~~af~~~~~~~~~~l~~i~~~I~~ 470 (1113)
...|+.+...+..-..++.+|++|.+.+.. .. -....++++.++++++......+.. ...+ .+.+..++.
T Consensus 107 ~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~-~~~~-------~~~~~~l~~ 178 (313)
T PRK05564 107 EQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKY-NDIK-------EEEKKSAIA 178 (313)
T ss_pred HHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHh-cCCC-------HHHHHHHHH
Confidence 678999988887767789998888765422 11 1223689999999999877665543 2110 133667888
Q ss_pred HhCCChHHHHH
Q 046764 471 RCNGLPLAAKT 481 (1113)
Q Consensus 471 ~c~GlPLAi~~ 481 (1113)
.++|.|..+..
T Consensus 179 ~~~g~~~~a~~ 189 (313)
T PRK05564 179 FSDGIPGKVEK 189 (313)
T ss_pred HcCCCHHHHHH
Confidence 99998865543
No 79
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.20 E-value=0.13 Score=30.62 Aligned_cols=16 Identities=50% Similarity=0.796 Sum_probs=7.8
Q ss_pred cccEEecCCCCCcccC
Q 046764 610 HLRHLDLSETDIQILP 625 (1113)
Q Consensus 610 ~Lr~L~Ls~~~i~~LP 625 (1113)
+|+.|+|++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5666666666666655
No 80
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=91.17 E-value=0.83 Score=51.58 Aligned_cols=73 Identities=15% Similarity=0.069 Sum_probs=48.0
Q ss_pred CcEEEEecCChhhHhhh--CCCceEecCCCCHHHHHHHHHhcccCCCCCCCchhHHHHHHHHHHHhCCChHHHHHHHhh
Q 046764 409 GSQIIVTTRNRDVAAIM--GSVRDYPLKESTKDDCLQVFTQHCLGMRDFSMQQSLKDISKKIVIRCNGLPLAAKTLAGL 485 (1113)
Q Consensus 409 gSrIivTTR~~~va~~~--~~~~~~~l~~L~~~~s~~LF~~~af~~~~~~~~~~l~~i~~~I~~~c~GlPLAi~~ig~~ 485 (1113)
.+-|.+||+...+.... .....+++++++.++..+++.+.+-... ... -.+....|++.|+|.|-.+..+...
T Consensus 130 ~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~-~~~---~~~al~~ia~~~~G~pR~~~~ll~~ 204 (305)
T TIGR00635 130 FTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLN-VEI---EPEAALEIARRSRGTPRIANRLLRR 204 (305)
T ss_pred eEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhC-CCc---CHHHHHHHHHHhCCCcchHHHHHHH
Confidence 45566677765443321 1135789999999999999998764322 111 1356788999999999665544443
No 81
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=90.81 E-value=0.67 Score=52.93 Aligned_cols=72 Identities=17% Similarity=0.050 Sum_probs=47.5
Q ss_pred CcEEEEecCChhhHhhh--CCCceEecCCCCHHHHHHHHHhcccCCCCCCCchhHHHHHHHHHHHhCCChHHHHHHHh
Q 046764 409 GSQIIVTTRNRDVAAIM--GSVRDYPLKESTKDDCLQVFTQHCLGMRDFSMQQSLKDISKKIVIRCNGLPLAAKTLAG 484 (1113)
Q Consensus 409 gSrIivTTR~~~va~~~--~~~~~~~l~~L~~~~s~~LF~~~af~~~~~~~~~~l~~i~~~I~~~c~GlPLAi~~ig~ 484 (1113)
.+-|.+|||...+.... .....+++++++.++..+++.+.+-..+ ... -.+....|++.|+|.|-.+..+..
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~-~~~---~~~~~~~ia~~~~G~pR~a~~~l~ 224 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILG-VEI---DEEGALEIARRSRGTPRIANRLLR 224 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC-CCc---CHHHHHHHHHHcCCCchHHHHHHH
Confidence 35566777754443321 1135789999999999999998864322 111 235688999999999965554443
No 82
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=90.52 E-value=0.45 Score=48.72 Aligned_cols=65 Identities=22% Similarity=0.230 Sum_probs=49.7
Q ss_pred CCCCCccccEEecCCCCCcccChhh-hccccccEEeccccccccccc--ccccCCCcceEEEcCCceec
Q 046764 604 HGGDLKHLRHLDLSETDIQILPESV-NTLYNLRMLMLQKCNQLEKMC--SDMGNLLKLHHLDNFDFCCW 669 (1113)
Q Consensus 604 ~i~~L~~Lr~L~Ls~~~i~~LP~~i-~~L~~L~~LdL~~c~~l~~LP--~~i~~L~~L~~L~L~~~~i~ 669 (1113)
.|..+..|.+|.|++|+|+.+-..+ ..+++|.+|.|.+ +++.++- ..+..+++|++|.+-+|.+.
T Consensus 59 ~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 59 NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN-NSIQELGDLDPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred cCCCccccceEEecCCcceeeccchhhhccccceEEecC-cchhhhhhcchhccCCccceeeecCCchh
Confidence 6778899999999999999984445 4566799999998 4566553 23567788999988877553
No 83
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=90.03 E-value=0.083 Score=55.95 Aligned_cols=41 Identities=12% Similarity=-0.007 Sum_probs=19.2
Q ss_pred hhccccccEEeccccccccccccc----ccCCCcceEEEcCCcee
Q 046764 628 VNTLYNLRMLMLQKCNQLEKMCSD----MGNLLKLHHLDNFDFCC 668 (1113)
Q Consensus 628 i~~L~~L~~LdL~~c~~l~~LP~~----i~~L~~L~~L~L~~~~i 668 (1113)
+-++++|+..+||.|-.-.+.|.. |+.-+.|.||.+++|..
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 334555555555554332233322 23445555555555543
No 84
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=89.49 E-value=2.8 Score=43.52 Aligned_cols=91 Identities=15% Similarity=0.264 Sum_probs=62.4
Q ss_pred cCcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEecCCh-hhHhhh-CCCceEecCCCCHHHHHHHHHhcccCCCC
Q 046764 377 SGKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTTRNR-DVAAIM-GSVRDYPLKESTKDDCLQVFTQHCLGMRD 454 (1113)
Q Consensus 377 ~~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTTR~~-~va~~~-~~~~~~~l~~L~~~~s~~LF~~~af~~~~ 454 (1113)
.+.+-+||+||+...+...++.+...+......+.+|++|++. .+.... ....++++.+++.++..+...+. +
T Consensus 94 ~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g--- 168 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G--- 168 (188)
T ss_pred cCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C---
Confidence 3566789999997776566777777766544566677666543 332222 12368999999999988877765 2
Q ss_pred CCCchhHHHHHHHHHHHhCCChH
Q 046764 455 FSMQQSLKDISKKIVIRCNGLPL 477 (1113)
Q Consensus 455 ~~~~~~l~~i~~~I~~~c~GlPL 477 (1113)
.. .+.+..|++.++|.|.
T Consensus 169 i~-----~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 169 IS-----EEAAELLLALAGGSPG 186 (188)
T ss_pred CC-----HHHHHHHHHHcCCCcc
Confidence 11 2567889999999875
No 85
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=89.46 E-value=1.4 Score=55.51 Aligned_cols=134 Identities=23% Similarity=0.283 Sum_probs=75.1
Q ss_pred EEEEEEeccc----chhhhcccccCC--------cCCCCCHHHHHHHHHHHh--cCcEEEEEEecCCCCChhhhhhhccc
Q 046764 337 HLLSLSIMMP----NIIRFIATADQP--------VNGTDELGLLQEKLKNQM--SGKKFLLVLGDVWNENYSDWDSLSLP 402 (1113)
Q Consensus 337 ~vi~I~G~gG----tLA~~vi~~~~~--------~~~~~~~~~l~~~l~~~L--~~kr~LiVLDDv~~~~~~~w~~l~~~ 402 (1113)
.-+-++|..| |+|+.+...... .....+..+......+.+ .+++.+++||||+.-+...++.+...
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~ 132 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAGVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPW 132 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhhhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHH
Confidence 3456899998 888888211100 001112222333333333 24677999999977654666666544
Q ss_pred ccCCCCCcEEEEe--cCChh--hHhhh-CCCceEecCCCCHHHHHHHHHhccc------CCCCCCCchhHHHHHHHHHHH
Q 046764 403 FEAGAPGSQIIVT--TRNRD--VAAIM-GSVRDYPLKESTKDDCLQVFTQHCL------GMRDFSMQQSLKDISKKIVIR 471 (1113)
Q Consensus 403 l~~~~~gSrIivT--TR~~~--va~~~-~~~~~~~l~~L~~~~s~~LF~~~af------~~~~~~~~~~l~~i~~~I~~~ 471 (1113)
+. .|+.++|+ |.+.. +.... ....++.+++++.++...++.+.+- +...... -.+....|++.
T Consensus 133 lE---~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I---~deaL~~La~~ 206 (725)
T PRK13341 133 VE---NGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDL---EPEAEKHLVDV 206 (725)
T ss_pred hc---CceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCC---CHHHHHHHHHh
Confidence 33 36666654 33321 21111 1235799999999999999887652 1111111 13556778888
Q ss_pred hCCCh
Q 046764 472 CNGLP 476 (1113)
Q Consensus 472 c~GlP 476 (1113)
+.|-.
T Consensus 207 s~GD~ 211 (725)
T PRK13341 207 ANGDA 211 (725)
T ss_pred CCCCH
Confidence 88754
No 86
>PLN03025 replication factor C subunit; Provisional
Probab=88.81 E-value=2.2 Score=48.56 Aligned_cols=94 Identities=7% Similarity=0.081 Sum_probs=60.1
Q ss_pred CcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEecCCh-----hhHhhhCCCceEecCCCCHHHHHHHHHhcccCC
Q 046764 378 GKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTTRNR-----DVAAIMGSVRDYPLKESTKDDCLQVFTQHCLGM 452 (1113)
Q Consensus 378 ~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTTR~~-----~va~~~~~~~~~~l~~L~~~~s~~LF~~~af~~ 452 (1113)
++.-+++||++...+....+.+...+......+++|+++... .+.+.| .+++++++++++-...+.+.+-..
T Consensus 98 ~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc---~~i~f~~l~~~~l~~~L~~i~~~e 174 (319)
T PLN03025 98 GRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRC---AIVRFSRLSDQEILGRLMKVVEAE 174 (319)
T ss_pred CCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhh---hcccCCCCCHHHHHHHHHHHHHHc
Confidence 456789999998876555555554443334457777766542 222222 579999999999888887765332
Q ss_pred CCCCCchhHHHHHHHHHHHhCCChHH
Q 046764 453 RDFSMQQSLKDISKKIVIRCNGLPLA 478 (1113)
Q Consensus 453 ~~~~~~~~l~~i~~~I~~~c~GlPLA 478 (1113)
+ .... .+....|++.++|-.-.
T Consensus 175 g-i~i~---~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 175 K-VPYV---PEGLEAIIFTADGDMRQ 196 (319)
T ss_pred C-CCCC---HHHHHHHHHHcCCCHHH
Confidence 2 1111 34677888999886633
No 87
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=88.72 E-value=0.15 Score=54.15 Aligned_cols=141 Identities=21% Similarity=0.282 Sum_probs=73.9
Q ss_pred CccccEEecCCCCCc-----ccChhhhccccccEEeccccc----------ccccccccccCCCcceEEEcCCceecccc
Q 046764 608 LKHLRHLDLSETDIQ-----ILPESVNTLYNLRMLMLQKCN----------QLEKMCSDMGNLLKLHHLDNFDFCCWKDI 672 (1113)
Q Consensus 608 L~~Lr~L~Ls~~~i~-----~LP~~i~~L~~L~~LdL~~c~----------~l~~LP~~i~~L~~L~~L~L~~~~i~~~~ 672 (1113)
+..+..++||+|.|. .+-..|.+-++|+.-+++.-. .+.-+-+.+-+.++|+..++++|.++...
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 556677888888775 244556666777777776521 11222233456778888888888766555
Q ss_pred ccccccc----c-ccccccceeeccccCccCh--hh-----HHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccC
Q 046764 673 DSALQEL----K-LLHLHGALEISKLENVRDA--SE-----AGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDML 740 (1113)
Q Consensus 673 ~~~l~~L----~-L~~L~g~L~i~~l~~~~~~--~~-----~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L 740 (1113)
|..+..+ . +.||. +.-+++...... .. +........+.|+......|..... .....-..+
T Consensus 109 ~e~L~d~is~~t~l~HL~--l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRleng-----s~~~~a~~l 181 (388)
T COG5238 109 PEELGDLISSSTDLVHLK--LNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENG-----SKELSAALL 181 (388)
T ss_pred chHHHHHHhcCCCceeEE--eecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccC-----cHHHHHHHH
Confidence 5444332 2 33333 222222222111 00 1112245567777777766652211 111122334
Q ss_pred CCCCCcceEEEeccC
Q 046764 741 KPHQNLERFCISGYG 755 (1113)
Q Consensus 741 ~~~~~L~~L~L~~~~ 755 (1113)
..+.+|+.+.|..+.
T Consensus 182 ~sh~~lk~vki~qNg 196 (388)
T COG5238 182 ESHENLKEVKIQQNG 196 (388)
T ss_pred HhhcCceeEEeeecC
Confidence 445678888877644
No 88
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=88.04 E-value=2 Score=45.93 Aligned_cols=100 Identities=14% Similarity=0.179 Sum_probs=51.0
Q ss_pred cEEEEEEecCCCCC------hhhhhhhcccccC--CCCCcEEEEecCChhhHhh--------hCCCceEecCCCCHHHHH
Q 046764 379 KKFLLVLGDVWNEN------YSDWDSLSLPFEA--GAPGSQIIVTTRNRDVAAI--------MGSVRDYPLKESTKDDCL 442 (1113)
Q Consensus 379 kr~LiVLDDv~~~~------~~~w~~l~~~l~~--~~~gSrIivTTR~~~va~~--------~~~~~~~~l~~L~~~~s~ 442 (1113)
++++||+||+.... ..-...+...+.. ....-.+|+++....+... .+....+.+++++.++++
T Consensus 118 ~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~ 197 (234)
T PF01637_consen 118 KKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAR 197 (234)
T ss_dssp CCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHH
T ss_pred CcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHH
Confidence 45999999996652 0111122222222 1233334455544544433 122245999999999999
Q ss_pred HHHHhcccCCCCCCCchhHHHHHHHHHHHhCCChHHHHH
Q 046764 443 QVFTQHCLGMRDFSMQQSLKDISKKIVIRCNGLPLAAKT 481 (1113)
Q Consensus 443 ~LF~~~af~~~~~~~~~~l~~i~~~I~~~c~GlPLAi~~ 481 (1113)
+++...+-.. ... +.-.+..++|...+||.|..|.-
T Consensus 198 ~~~~~~~~~~--~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 198 EFLKELFKEL--IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp HHHHHHHHCC---------HHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHh--hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 9998864221 111 11234568999999999987753
No 89
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=87.79 E-value=3.9 Score=49.24 Aligned_cols=99 Identities=15% Similarity=0.219 Sum_probs=67.7
Q ss_pred cCcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEE-EecCChhhHhhh-CCCceEecCCCCHHHHHHHHHhcccCCCC
Q 046764 377 SGKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQII-VTTRNRDVAAIM-GSVRDYPLKESTKDDCLQVFTQHCLGMRD 454 (1113)
Q Consensus 377 ~~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIi-vTTR~~~va~~~-~~~~~~~l~~L~~~~s~~LF~~~af~~~~ 454 (1113)
.+++-++|+|+++..+...|+.+...+......+++| +||+.+.+.... .....+++++++.++....+.+.+-..+-
T Consensus 126 ~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi 205 (507)
T PRK06645 126 QGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL 205 (507)
T ss_pred cCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4567789999999876677888887776554556655 455555555433 22367999999999999999887643221
Q ss_pred CCCchhHHHHHHHHHHHhCCChHHH
Q 046764 455 FSMQQSLKDISKKIVIRCNGLPLAA 479 (1113)
Q Consensus 455 ~~~~~~l~~i~~~I~~~c~GlPLAi 479 (1113)
.. -.+....|++.++|-+--+
T Consensus 206 -~i---e~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 206 -KT---DIEALRIIAYKSEGSARDA 226 (507)
T ss_pred -CC---CHHHHHHHHHHcCCCHHHH
Confidence 11 1245567888999977433
No 90
>PRK08727 hypothetical protein; Validated
Probab=87.56 E-value=2 Score=46.33 Aligned_cols=138 Identities=12% Similarity=0.069 Sum_probs=76.0
Q ss_pred EEEEEEeccc----chhhhc----ccccCCcCCCCCHHHHHHHHHHHhc--CcEEEEEEecCCCCCh-hhhhhhcccccC
Q 046764 337 HLLSLSIMMP----NIIRFI----ATADQPVNGTDELGLLQEKLKNQMS--GKKFLLVLGDVWNENY-SDWDSLSLPFEA 405 (1113)
Q Consensus 337 ~vi~I~G~gG----tLA~~v----i~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LiVLDDv~~~~~-~~w~~l~~~l~~ 405 (1113)
.-+.|+|..| +||+.+ ...... ....+..+....+.+.+. .+.-+|||||+..... ..|....-.+.+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~-~~y~~~~~~~~~~~~~~~~l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n 120 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRS-SAYLPLQAAAGRLRDALEALEGRSLVALDGLESIAGQREDEVALFDFHN 120 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCc-EEEEeHHHhhhhHHHHHHHHhcCCEEEEeCcccccCChHHHHHHHHHHH
Confidence 3478899888 577776 111110 001112222222222221 1335899999965421 234322212211
Q ss_pred --CCCCcEEEEecCC---------hhhHhhhCCCceEecCCCCHHHHHHHHHhcccCCCCCCCchhHHHHHHHHHHHhCC
Q 046764 406 --GAPGSQIIVTTRN---------RDVAAIMGSVRDYPLKESTKDDCLQVFTQHCLGMRDFSMQQSLKDISKKIVIRCNG 474 (1113)
Q Consensus 406 --~~~gSrIivTTR~---------~~va~~~~~~~~~~l~~L~~~~s~~LF~~~af~~~~~~~~~~l~~i~~~I~~~c~G 474 (1113)
...|..||+|++. +++..++....++++++++.++-..++.+++...+ ... -++...-|++.+.|
T Consensus 121 ~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~-l~l---~~e~~~~La~~~~r 196 (233)
T PRK08727 121 RARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRG-LAL---DEAAIDWLLTHGER 196 (233)
T ss_pred HHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcC-CCC---CHHHHHHHHHhCCC
Confidence 1246679999984 34444555557899999999999999998764422 111 13566777888876
Q ss_pred ChHHH
Q 046764 475 LPLAA 479 (1113)
Q Consensus 475 lPLAi 479 (1113)
-.-++
T Consensus 197 d~r~~ 201 (233)
T PRK08727 197 ELAGL 201 (233)
T ss_pred CHHHH
Confidence 55443
No 91
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.01 E-value=0.054 Score=57.52 Aligned_cols=74 Identities=23% Similarity=0.171 Sum_probs=46.3
Q ss_pred CCCeeEEccCCcC-----CCCCCccccEEecCCCCCcccChhhhccccccEEeccccccccccc--ccccCCCcceEEEc
Q 046764 591 FENLQTFLPTTVS-----HGGDLKHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMC--SDMGNLLKLHHLDN 663 (1113)
Q Consensus 591 l~~Lr~L~~~~~~-----~i~~L~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP--~~i~~L~~L~~L~L 663 (1113)
+.+++.|.++++. -..+|+.|++|.||-|+|+.| ..+..+++|+.|+|+.| .+..+- .-+.+|++|++|-|
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHhh
Confidence 4455566666654 234677788888888877777 33677777777777763 343332 12356667777766
Q ss_pred CCc
Q 046764 664 FDF 666 (1113)
Q Consensus 664 ~~~ 666 (1113)
..|
T Consensus 96 ~EN 98 (388)
T KOG2123|consen 96 DEN 98 (388)
T ss_pred ccC
Confidence 655
No 92
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=86.02 E-value=0.46 Score=28.21 Aligned_cols=17 Identities=24% Similarity=0.524 Sum_probs=8.4
Q ss_pred CCccEEEEeecCCCCccc
Q 046764 1019 TSLQVITVFRCKNLKTLP 1036 (1113)
Q Consensus 1019 ~sL~~L~Ls~c~~l~~lP 1036 (1113)
++|+.|+|++|+ ++++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 356777777765 55554
No 93
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.51 E-value=0.078 Score=56.36 Aligned_cols=78 Identities=18% Similarity=0.110 Sum_probs=48.1
Q ss_pred CCCcccEEEEeccCCCCcccCCCccccccccccCCCCCCcccccccCCCCC---cCcccCCCCCCceEEEcccCCCcccc
Q 046764 860 SLPSLNELKLGGCKKGGLQKGQPIIGRRIHYGCADTSSSLRVCLQCCNSLT---NNARVQLPLSLKDLSIAFCDNLRTLV 936 (1113)
Q Consensus 860 ~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~~l~~L~~L~~~~N~L~---~~~~l~~l~~L~~L~Ls~c~~L~~l~ 936 (1113)
..|.|+.|.|+-|++... ..+..|++|++|++-.|.+. ...-+.++++|+.|.|..|+.-..-
T Consensus 39 kMp~lEVLsLSvNkIssL-------------~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~a- 104 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSL-------------APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEA- 104 (388)
T ss_pred hcccceeEEeeccccccc-------------hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCccccc-
Confidence 356667777766666543 34566777777766666666 3345678888888888887632211
Q ss_pred cccCCCCCcc----cCCCCccEEE
Q 046764 937 EEEGIPKGSR----KYSSHLECLH 956 (1113)
Q Consensus 937 ~~~~lp~~l~----~~l~~L~~L~ 956 (1113)
+.... ..||+|++||
T Consensus 105 -----g~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 105 -----GQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred -----chhHHHHHHHHcccchhcc
Confidence 11110 2478888887
No 94
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.11 E-value=0.84 Score=30.33 Aligned_cols=21 Identities=43% Similarity=0.694 Sum_probs=15.4
Q ss_pred CccccEEecCCCCCcccChhh
Q 046764 608 LKHLRHLDLSETDIQILPESV 628 (1113)
Q Consensus 608 L~~Lr~L~Ls~~~i~~LP~~i 628 (1113)
|++|++|+|++|+|+.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 457788888888888877643
No 95
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.11 E-value=0.84 Score=30.33 Aligned_cols=21 Identities=43% Similarity=0.694 Sum_probs=15.4
Q ss_pred CccccEEecCCCCCcccChhh
Q 046764 608 LKHLRHLDLSETDIQILPESV 628 (1113)
Q Consensus 608 L~~Lr~L~Ls~~~i~~LP~~i 628 (1113)
|++|++|+|++|+|+.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 457788888888888877643
No 96
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.10 E-value=0.14 Score=52.32 Aligned_cols=51 Identities=25% Similarity=0.364 Sum_probs=31.0
Q ss_pred CeEEEEecCCCccccC-----CCCCCccEEEEeecCCCCcc-cccCCCCCCcCeeee
Q 046764 1000 PKYLELTSCSKWESIA-----DNNTSLQVITVFRCKNLKTL-PDGLHKLNNLQAFTI 1050 (1113)
Q Consensus 1000 L~~L~L~~c~~L~~lp-----~~l~sL~~L~Ls~c~~l~~l-P~~l~~L~sL~~L~L 1050 (1113)
++.|.+.+|..+.+.. ...++|+.|+|++|+.+++- -.++..+++|+.|.|
T Consensus 127 i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l 183 (221)
T KOG3864|consen 127 IKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHL 183 (221)
T ss_pred hhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHh
Confidence 5555555555444321 12578888888888877654 235566667776666
No 97
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=83.85 E-value=1.5 Score=47.52 Aligned_cols=78 Identities=14% Similarity=0.137 Sum_probs=52.4
Q ss_pred HHHhHHHHHHHHHHHHhhhccchhhhhccchhhHHHhHHHHHHHHHHhchHHHHHHHHHHHhh-ccchHHHHHHHHHHHH
Q 046764 197 NVVGYIGCLADILLNQHGKHKAADIMGRIGASAAVFGFLTMMGTLIEVNPAVINAVIDDAEEK-QKREQSVKMWLGELQN 275 (1113)
Q Consensus 197 ~v~~~l~kl~~~l~~e~~~~~~v~~~~~~~d~~~i~~e~~~~~~fl~~~l~~i~~~l~dae~~-~~~~~~v~~W~~~lr~ 275 (1113)
-|.-+++.|.+. +-...-+++..+.+++.|+.|+++++.||++ + +++. ...+. .+.++.++..
T Consensus 297 yVdFlL~NLkdf-----q~rysdSlaflKnQiqvIQ~elesLqpFLk~--------V--~ee~~nkh~~-~ed~a~~ii~ 360 (402)
T PF12061_consen 297 YVDFLLKNLKDF-----QGRYSDSLAFLKNQIQVIQTELESLQPFLKH--------V--VEEPHNKHDT-NEDCATQIIR 360 (402)
T ss_pred HHHHHHhhHHHH-----hccccchHHHHHHHHHHHHHHHHHhhHHHHH--------H--Hhccchhhhh-hhhHHHHHHH
Confidence 344444555444 3344445555588888888888888888775 2 1221 22333 8889999999
Q ss_pred HHhhhhhhhhhhhhh
Q 046764 276 LAYDVDVLLDEFETE 290 (1113)
Q Consensus 276 ~ayd~ed~id~~~~~ 290 (1113)
.||.+|+++|.....
T Consensus 361 kAyevEYVVDaCi~k 375 (402)
T PF12061_consen 361 KAYEVEYVVDACISK 375 (402)
T ss_pred HHhheeeeeehhhcC
Confidence 999999999987643
No 98
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.57 E-value=11 Score=45.47 Aligned_cols=104 Identities=11% Similarity=0.135 Sum_probs=68.2
Q ss_pred cCcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEecC-ChhhHhhh-CCCceEecCCCCHHHHHHHHHhcccCCCC
Q 046764 377 SGKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTTR-NRDVAAIM-GSVRDYPLKESTKDDCLQVFTQHCLGMRD 454 (1113)
Q Consensus 377 ~~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTTR-~~~va~~~-~~~~~~~l~~L~~~~s~~LF~~~af~~~~ 454 (1113)
.+++-+||+|+++..+...++.+...+........+|++|. ...+...+ .....+++.+++.++....+.+.+-..+-
T Consensus 114 ~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi 193 (504)
T PRK14963 114 RGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGR 193 (504)
T ss_pred cCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 35666899999987766678888777765444555555554 44443322 22368999999999999999887643321
Q ss_pred CCCchhHHHHHHHHHHHhCCChH-HHHHHHh
Q 046764 455 FSMQQSLKDISKKIVIRCNGLPL-AAKTLAG 484 (1113)
Q Consensus 455 ~~~~~~l~~i~~~I~~~c~GlPL-Ai~~ig~ 484 (1113)
.. -.+....|++.++|.+- |+..+-.
T Consensus 194 -~i---~~~Al~~ia~~s~GdlR~aln~Lek 220 (504)
T PRK14963 194 -EA---EPEALQLVARLADGAMRDAESLLER 220 (504)
T ss_pred -CC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 11 13567788999999884 4444433
No 99
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=81.25 E-value=0.12 Score=53.64 Aligned_cols=78 Identities=15% Similarity=0.093 Sum_probs=64.2
Q ss_pred CCCCCeeEEccCCcC------CCCCCccccEEecCCCCCcccChhhhccccccEEecccccccccccccccCCCcceEEE
Q 046764 589 FEFENLQTFLPTTVS------HGGDLKHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLD 662 (1113)
Q Consensus 589 ~~l~~Lr~L~~~~~~------~i~~L~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~ 662 (1113)
....+...|.++.+. .|+.+..|..||++.|.|..+|+.++.+..++.+++.. +....+|.++++++++++++
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcchhh
Confidence 344555666555443 67778889999999999999999999999999999987 57889999999999999999
Q ss_pred cCCce
Q 046764 663 NFDFC 667 (1113)
Q Consensus 663 L~~~~ 667 (1113)
+.++.
T Consensus 118 ~k~~~ 122 (326)
T KOG0473|consen 118 QKKTE 122 (326)
T ss_pred hccCc
Confidence 88774
No 100
>PRK08084 DNA replication initiation factor; Provisional
Probab=81.24 E-value=7.1 Score=42.18 Aligned_cols=97 Identities=13% Similarity=0.165 Sum_probs=61.1
Q ss_pred EEEEEecCCCCCh-hhhhhhc-ccccCC-CCC-cEEEEecCC---------hhhHhhhCCCceEecCCCCHHHHHHHHHh
Q 046764 381 FLLVLGDVWNENY-SDWDSLS-LPFEAG-APG-SQIIVTTRN---------RDVAAIMGSVRDYPLKESTKDDCLQVFTQ 447 (1113)
Q Consensus 381 ~LiVLDDv~~~~~-~~w~~l~-~~l~~~-~~g-SrIivTTR~---------~~va~~~~~~~~~~l~~L~~~~s~~LF~~ 447 (1113)
-++++||+..... .+|+... ..+... ..| .++|+||+. +++..++....+++++++++++-.+.+.+
T Consensus 99 dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~ 178 (235)
T PRK08084 99 SLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQL 178 (235)
T ss_pred CEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHH
Confidence 3789999965321 3454322 222111 123 368888874 35666677778999999999999998887
Q ss_pred cccCCCCCCCchhHHHHHHHHHHHhCCChHHHHH
Q 046764 448 HCLGMRDFSMQQSLKDISKKIVIRCNGLPLAAKT 481 (1113)
Q Consensus 448 ~af~~~~~~~~~~l~~i~~~I~~~c~GlPLAi~~ 481 (1113)
++...+ ... -+++..-|++.+.|-.-++..
T Consensus 179 ~a~~~~-~~l---~~~v~~~L~~~~~~d~r~l~~ 208 (235)
T PRK08084 179 RARLRG-FEL---PEDVGRFLLKRLDREMRTLFM 208 (235)
T ss_pred HHHHcC-CCC---CHHHHHHHHHhhcCCHHHHHH
Confidence 663322 111 246777888888876655544
No 101
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.17 E-value=14 Score=42.79 Aligned_cols=99 Identities=11% Similarity=0.116 Sum_probs=64.3
Q ss_pred CcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEecCC-hhhHhhh-CCCceEecCCCCHHHHHHHHHhcccCCCCC
Q 046764 378 GKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTTRN-RDVAAIM-GSVRDYPLKESTKDDCLQVFTQHCLGMRDF 455 (1113)
Q Consensus 378 ~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTTR~-~~va~~~-~~~~~~~l~~L~~~~s~~LF~~~af~~~~~ 455 (1113)
+++-++|+|++...+...++.+...+.......++|++|.+ ..+.... +....+++++++.++..+...+.+-..+.
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~- 196 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESI- 196 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC-
Confidence 45568999999887655677777766654456667766654 3333322 22368999999999988877765433221
Q ss_pred CCchhHHHHHHHHHHHhCCChHHHH
Q 046764 456 SMQQSLKDISKKIVIRCNGLPLAAK 480 (1113)
Q Consensus 456 ~~~~~l~~i~~~I~~~c~GlPLAi~ 480 (1113)
.. -.+.+..|++.++|-|-.+.
T Consensus 197 ~i---~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 197 DT---DEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred CC---CHHHHHHHHHHcCCCHHHHH
Confidence 11 12456778889999875443
No 102
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=80.81 E-value=23 Score=40.89 Aligned_cols=116 Identities=9% Similarity=0.094 Sum_probs=60.0
Q ss_pred HHHHHHHHHhc--CcEEEEEEecCCCCC---hhhhhhhcccc-cCCC--CCcEEEEecCChhhHhhhC-------CCceE
Q 046764 367 LLQEKLKNQMS--GKKFLLVLGDVWNEN---YSDWDSLSLPF-EAGA--PGSQIIVTTRNRDVAAIMG-------SVRDY 431 (1113)
Q Consensus 367 ~l~~~l~~~L~--~kr~LiVLDDv~~~~---~~~w~~l~~~l-~~~~--~gSrIivTTR~~~va~~~~-------~~~~~ 431 (1113)
++...+.+.+. +++++||||+++... .+....+.... .... ..-.+|.+|...+...... ....+
T Consensus 115 ~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i 194 (365)
T TIGR02928 115 EVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEI 194 (365)
T ss_pred HHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCccee
Confidence 33444455553 568899999997752 11122222211 1111 2233455554443222111 12468
Q ss_pred ecCCCCHHHHHHHHHhcccC-CCCCCCchhHHHHHHHHHHHhCCCh-HHHHHH
Q 046764 432 PLKESTKDDCLQVFTQHCLG-MRDFSMQQSLKDISKKIVIRCNGLP-LAAKTL 482 (1113)
Q Consensus 432 ~l~~L~~~~s~~LF~~~af~-~~~~~~~~~l~~i~~~I~~~c~GlP-LAi~~i 482 (1113)
.+++.+.++-.+++..++-. ..+....++..+...+++..+.|-+ .|+.++
T Consensus 195 ~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l 247 (365)
T TIGR02928 195 IFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLL 247 (365)
T ss_pred eeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 89999999999999887631 1111122333345555677777877 444443
No 103
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=79.77 E-value=7.3 Score=45.67 Aligned_cols=105 Identities=11% Similarity=0.145 Sum_probs=67.0
Q ss_pred EEEEEeccc----chhhhcccccCCc------C-CCCCHHHHHHHHHHHh---cCcEEEEEEecCCCCChhhhhhhcccc
Q 046764 338 LLSLSIMMP----NIIRFIATADQPV------N-GTDELGLLQEKLKNQM---SGKKFLLVLGDVWNENYSDWDSLSLPF 403 (1113)
Q Consensus 338 vi~I~G~gG----tLA~~vi~~~~~~------~-~~~~~~~l~~~l~~~L---~~kr~LiVLDDv~~~~~~~w~~l~~~l 403 (1113)
++.|.|+-+ |+++.++...... . ...+..++.+.++.+. ..++..|+||.|... .+|+.....+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq~v--~~W~~~lk~l 116 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQNV--PDWERALKYL 116 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhHHHHHHHHHHhhccCCceEEEecccCc--hhHHHHHHHH
Confidence 778888875 8887663222100 0 1112223333333332 226689999999988 8899988888
Q ss_pred cCCCCCcEEEEecCChhhHhh-----h-CCCceEecCCCCHHHHHHHH
Q 046764 404 EAGAPGSQIIVTTRNRDVAAI-----M-GSVRDYPLKESTKDDCLQVF 445 (1113)
Q Consensus 404 ~~~~~gSrIivTTR~~~va~~-----~-~~~~~~~l~~L~~~~s~~LF 445 (1113)
.+.++. +|++|+-+...... . |-...+++-||+-.|...+-
T Consensus 117 ~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 117 YDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred Hccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 776666 88888887554332 2 33367999999999887653
No 104
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=79.63 E-value=8.6 Score=44.42 Aligned_cols=97 Identities=12% Similarity=0.112 Sum_probs=65.7
Q ss_pred CcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEecCCh-hhHhhh-CCCceEecCCCCHHHHHHHHHhcccCCCCC
Q 046764 378 GKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTTRNR-DVAAIM-GSVRDYPLKESTKDDCLQVFTQHCLGMRDF 455 (1113)
Q Consensus 378 ~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTTR~~-~va~~~-~~~~~~~l~~L~~~~s~~LF~~~af~~~~~ 455 (1113)
+++.++|+||+...+......+...+..-..++.+|++|... .+.... .....+.+.+++.++..+...... +..
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~-~~~-- 216 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAG-PDL-- 216 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhc-ccC--
Confidence 556789999998887777777776665544566666666654 333222 223689999999999999888753 111
Q ss_pred CCchhHHHHHHHHHHHhCCChHHHHHH
Q 046764 456 SMQQSLKDISKKIVIRCNGLPLAAKTL 482 (1113)
Q Consensus 456 ~~~~~l~~i~~~I~~~c~GlPLAi~~i 482 (1113)
.+ .....+++.++|.|.....+
T Consensus 217 --~~---~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 217 --PD---DPRAALAALAEGSVGRALRL 238 (365)
T ss_pred --CH---HHHHHHHHHcCCCHHHHHHH
Confidence 11 11267899999999766554
No 105
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.93 E-value=17 Score=44.81 Aligned_cols=102 Identities=11% Similarity=0.135 Sum_probs=66.2
Q ss_pred cCcEEEEEEecCCCCChhhhhhhcccccCCCCCcE-EEEecCChhhHhhh-CCCceEecCCCCHHHHHHHHHhcccCCCC
Q 046764 377 SGKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQ-IIVTTRNRDVAAIM-GSVRDYPLKESTKDDCLQVFTQHCLGMRD 454 (1113)
Q Consensus 377 ~~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSr-IivTTR~~~va~~~-~~~~~~~l~~L~~~~s~~LF~~~af~~~~ 454 (1113)
.+++-++|||++...+...++.+...+..-..+.+ |++||....+.... .-...+.++.++.++..+.+.+.+-. ++
T Consensus 122 ~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~-Eg 200 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGE-EG 200 (700)
T ss_pred cCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHH-cC
Confidence 45667899999988877778887776654334445 55555555554322 12267999999999998887766422 22
Q ss_pred CCCchhHHHHHHHHHHHhCCChHHHHHH
Q 046764 455 FSMQQSLKDISKKIVIRCNGLPLAAKTL 482 (1113)
Q Consensus 455 ~~~~~~l~~i~~~I~~~c~GlPLAi~~i 482 (1113)
... -.+....|++.++|.|.....+
T Consensus 201 i~~---d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 201 IAH---EVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred CCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 111 1244577899999988644443
No 106
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=78.84 E-value=15 Score=45.83 Aligned_cols=103 Identities=10% Similarity=0.144 Sum_probs=67.5
Q ss_pred CcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEecCCh-hhHhhh-CCCceEecCCCCHHHHHHHHHhcccCCCCC
Q 046764 378 GKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTTRNR-DVAAIM-GSVRDYPLKESTKDDCLQVFTQHCLGMRDF 455 (1113)
Q Consensus 378 ~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTTR~~-~va~~~-~~~~~~~l~~L~~~~s~~LF~~~af~~~~~ 455 (1113)
++.-++|||++...+...|+.+...+..-....++|+||++. .+.... .-...++++.++.++..+.+.+.+ +.++.
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il-~~EgI 196 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERIL-GEERI 196 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHH-HHcCC
Confidence 455588899998887677888877665544567777766653 332221 222689999999999988887764 22222
Q ss_pred CCchhHHHHHHHHHHHhCCCh-HHHHHHHh
Q 046764 456 SMQQSLKDISKKIVIRCNGLP-LAAKTLAG 484 (1113)
Q Consensus 456 ~~~~~l~~i~~~I~~~c~GlP-LAi~~ig~ 484 (1113)
.. -.+....|++.++|-. -|+..+-.
T Consensus 197 ~i---d~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 197 AF---EPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred CC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 11 2356678889998855 56555433
No 107
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=78.82 E-value=14 Score=41.65 Aligned_cols=97 Identities=10% Similarity=0.068 Sum_probs=58.9
Q ss_pred cEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEecCC-hhhHhhh-CCCceEecCCCCHHHHHHHHHhcccCCCCCC
Q 046764 379 KKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTTRN-RDVAAIM-GSVRDYPLKESTKDDCLQVFTQHCLGMRDFS 456 (1113)
Q Consensus 379 kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTTR~-~~va~~~-~~~~~~~l~~L~~~~s~~LF~~~af~~~~~~ 456 (1113)
.+-+|++|++.......++.+...+......+++|+++.. ..+.... ....++++++++.++........+-..+ ..
T Consensus 102 ~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~-~~ 180 (319)
T PRK00440 102 PFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEG-IE 180 (319)
T ss_pred CceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcC-CC
Confidence 4568999998766444455555555444445677776643 2221111 1224689999999998888777653322 11
Q ss_pred CchhHHHHHHHHHHHhCCChHHH
Q 046764 457 MQQSLKDISKKIVIRCNGLPLAA 479 (1113)
Q Consensus 457 ~~~~l~~i~~~I~~~c~GlPLAi 479 (1113)
. -.+....+++.++|-+--+
T Consensus 181 i---~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 181 I---TDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred C---CHHHHHHHHHHcCCCHHHH
Confidence 1 1346777888999887543
No 108
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=78.77 E-value=21 Score=40.58 Aligned_cols=97 Identities=13% Similarity=0.187 Sum_probs=63.2
Q ss_pred CcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEecCCh-hhHhhh-CCCceEecCCCCHHHHHHHHHhcccCCCCC
Q 046764 378 GKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTTRNR-DVAAIM-GSVRDYPLKESTKDDCLQVFTQHCLGMRDF 455 (1113)
Q Consensus 378 ~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTTR~~-~va~~~-~~~~~~~l~~L~~~~s~~LF~~~af~~~~~ 455 (1113)
+++-.+|+|++...+....+.+...+..-..++.+|.||.+. .+.... .-...+.+.+++.+++.+.+.... +...
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~~~- 182 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PESD- 182 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-ccCC-
Confidence 344455679998887777777776665444566777777664 343222 223679999999999988887653 1111
Q ss_pred CCchhHHHHHHHHHHHhCCChHHHHHH
Q 046764 456 SMQQSLKDISKKIVIRCNGLPLAAKTL 482 (1113)
Q Consensus 456 ~~~~~l~~i~~~I~~~c~GlPLAi~~i 482 (1113)
.+-+..++..++|.|..+..+
T Consensus 183 ------~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 183 ------ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ------hHHHHHHHHHcCCCHHHHHHH
Confidence 123456788999999755543
No 109
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.69 E-value=0.3 Score=49.97 Aligned_cols=63 Identities=25% Similarity=0.372 Sum_probs=37.5
Q ss_pred CCCCCCcceeeccccCcCcccccCCCCcccccCCCccEEEEecCcCcccc-c--CCCCCCccEEEEecc
Q 046764 786 LIPFPSLETLRFENMQEREDWIPYSSSQEVEVFPNLRDLFLLRCSKLLGT-L--PKHLPSLQKLVIQRC 851 (1113)
Q Consensus 786 l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~-l--p~~l~~L~~L~L~~c 851 (1113)
+..++.++.|.+.+|..+.+|.... -.+.+|+|+.|+|++|+.+++. + -..+++|+.|.|.+-
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~---l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLER---LGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred HhccchhhhheeccccchhhHHHHH---hcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCc
Confidence 3456777778888888877776422 2235677777777777766521 0 013455555555443
No 110
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=78.39 E-value=9.1 Score=47.68 Aligned_cols=201 Identities=15% Similarity=0.105 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHhc--CcEEEEEEecCCCCChhhhhh-hcccccCCCCCcEEEEecCChh---hHhhhCCCceEecC----
Q 046764 365 LGLLQEKLKNQMS--GKKFLLVLGDVWNENYSDWDS-LSLPFEAGAPGSQIIVTTRNRD---VAAIMGSVRDYPLK---- 434 (1113)
Q Consensus 365 ~~~l~~~l~~~L~--~kr~LiVLDDv~~~~~~~w~~-l~~~l~~~~~gSrIivTTR~~~---va~~~~~~~~~~l~---- 434 (1113)
...+.+.+...+. .+...+||||---......+. +..-+....++-.+|||||+.- +|..--.+...++.
T Consensus 113 l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~L 192 (894)
T COG2909 113 LESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEEL 192 (894)
T ss_pred HHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHhh
Confidence 3334444444443 357899999975543233332 2222233345788999999853 22211112233333
Q ss_pred CCCHHHHHHHHHhcccCCCCCCCchhHHHHHHHHHHHhCCChHHHHHHHhhhcCCCCc-------------ccccccccc
Q 046764 435 ESTKDDCLQVFTQHCLGMRDFSMQQSLKDISKKIVIRCNGLPLAAKTLAGLLRGKNDP-------------RFSACSIAR 501 (1113)
Q Consensus 435 ~L~~~~s~~LF~~~af~~~~~~~~~~l~~i~~~I~~~c~GlPLAi~~ig~~L~~~~~~-------------cfly~~~~~ 501 (1113)
.++.+|+-.+|....-..- -+.-++.+.+..+|-+-|+..++=.++..... ---|+.-..
T Consensus 193 rf~~eE~~~fl~~~~~l~L-------d~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG~~~~l~dYL~eeV 265 (894)
T COG2909 193 RFDTEEAAAFLNDRGSLPL-------DAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSGAASHLSDYLVEEV 265 (894)
T ss_pred cCChHHHHHHHHHcCCCCC-------ChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccchHHHHHHHHHHHH
Confidence 4789999999987631111 12346778888899998888887777733222 000111000
Q ss_pred cccCcCCcccchhhHHHHHHHHcCCCccCCchhhHHHHHHHHHHHHHhCCCccc-cCCCCCceeechHHHHHHHHh
Q 046764 502 YGIYQKNYEFHEEEEVTLLWMAEGFPYHIDTKEEIQDLGHKFFHELYSRSSFQQ-SSSDPCRFLMHDLINDLAQWA 576 (1113)
Q Consensus 502 ~~~fp~~~~i~~~~~Li~~Wiaegfi~~~~~~~~~e~~~~~~~~~Lv~rsli~~-~~~~~~~~~mHdlv~d~~~~i 576 (1113)
++--|.+ -+ +-|+..-+..-|-.+--..-+-++-|...+++|-+++++-. -+++...|+.|.++.||-+.-
T Consensus 266 ld~Lp~~---l~-~FLl~~svl~~f~~eL~~~Ltg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r 337 (894)
T COG2909 266 LDRLPPE---LR-DFLLQTSVLSRFNDELCNALTGEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQR 337 (894)
T ss_pred HhcCCHH---HH-HHHHHHHhHHHhhHHHHHHHhcCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhh
Confidence 0000100 00 11111111111111100011223446677999999998875 456678899999999998765
No 111
>PRK05642 DNA replication initiation factor; Validated
Probab=78.10 E-value=9 Score=41.36 Aligned_cols=140 Identities=14% Similarity=0.161 Sum_probs=77.0
Q ss_pred EEEEEEeccc----chhhhcc---cccCCcCCCCCHHHHH---HHHHHHhcCcEEEEEEecCCCCC-hhhhhh-hccccc
Q 046764 337 HLLSLSIMMP----NIIRFIA---TADQPVNGTDELGLLQ---EKLKNQMSGKKFLLVLGDVWNEN-YSDWDS-LSLPFE 404 (1113)
Q Consensus 337 ~vi~I~G~gG----tLA~~vi---~~~~~~~~~~~~~~l~---~~l~~~L~~kr~LiVLDDv~~~~-~~~w~~-l~~~l~ 404 (1113)
..+.|+|..| .||+.+. .......-..+.+++. ..+.+.+++-- ++|+||+.... ...|+. +...+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n 124 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPELLDNLEQYE-LVCLDDLDVIAGKADWEEALFHLFN 124 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhhHHHHHhhhhCC-EEEEechhhhcCChHHHHHHHHHHH
Confidence 3467888888 5776661 1110001111222222 22333333322 67899996431 134543 322222
Q ss_pred C-CCCCcEEEEecCCh---------hhHhhhCCCceEecCCCCHHHHHHHHHhcccCCCCCCCchhHHHHHHHHHHHhCC
Q 046764 405 A-GAPGSQIIVTTRNR---------DVAAIMGSVRDYPLKESTKDDCLQVFTQHCLGMRDFSMQQSLKDISKKIVIRCNG 474 (1113)
Q Consensus 405 ~-~~~gSrIivTTR~~---------~va~~~~~~~~~~l~~L~~~~s~~LF~~~af~~~~~~~~~~l~~i~~~I~~~c~G 474 (1113)
. ...|.+||+|++.. ++..++....++++++++.++-.....+++...+ ...+ +++..-|++++.|
T Consensus 125 ~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~-~~l~---~ev~~~L~~~~~~ 200 (234)
T PRK05642 125 RLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRG-LHLT---DEVGHFILTRGTR 200 (234)
T ss_pred HHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHhcCC
Confidence 1 13467788888742 2333444557899999999999999987664432 1111 4677888888888
Q ss_pred ChHHHHH
Q 046764 475 LPLAAKT 481 (1113)
Q Consensus 475 lPLAi~~ 481 (1113)
-.-++..
T Consensus 201 d~r~l~~ 207 (234)
T PRK05642 201 SMSALFD 207 (234)
T ss_pred CHHHHHH
Confidence 7655544
No 112
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=78.03 E-value=4.9 Score=46.66 Aligned_cols=94 Identities=11% Similarity=0.044 Sum_probs=53.3
Q ss_pred CcEEEEEEecCCCCC-----------hh---hhhhhccccc--CCCCCcEEEEecCChhhH-----hhhCCCceEecCCC
Q 046764 378 GKKFLLVLGDVWNEN-----------YS---DWDSLSLPFE--AGAPGSQIIVTTRNRDVA-----AIMGSVRDYPLKES 436 (1113)
Q Consensus 378 ~kr~LiVLDDv~~~~-----------~~---~w~~l~~~l~--~~~~gSrIivTTR~~~va-----~~~~~~~~~~l~~L 436 (1113)
....+|++||++... .. .+..+...+. ....+.+||.||...+.. .....+..+++...
T Consensus 214 ~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P 293 (364)
T TIGR01242 214 KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLP 293 (364)
T ss_pred cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCc
Confidence 356799999986531 01 1112221121 113467788888754322 11123467999999
Q ss_pred CHHHHHHHHHhcccCCCCCCCchhHHHHHHHHHHHhCCCh
Q 046764 437 TKDDCLQVFTQHCLGMRDFSMQQSLKDISKKIVIRCNGLP 476 (1113)
Q Consensus 437 ~~~~s~~LF~~~af~~~~~~~~~~l~~i~~~I~~~c~GlP 476 (1113)
+.++.+++|..++.+.... ...+ ...+++.+.|..
T Consensus 294 ~~~~r~~Il~~~~~~~~l~-~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 294 DFEGRLEILKIHTRKMKLA-EDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CHHHHHHHHHHHHhcCCCC-ccCC----HHHHHHHcCCCC
Confidence 9999999999887543321 1122 345666676654
No 113
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.75 E-value=18 Score=44.55 Aligned_cols=101 Identities=11% Similarity=0.134 Sum_probs=64.8
Q ss_pred cCcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEecCC-hhhHhh-hCCCceEecCCCCHHHHHHHHHhcccCCCC
Q 046764 377 SGKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTTRN-RDVAAI-MGSVRDYPLKESTKDDCLQVFTQHCLGMRD 454 (1113)
Q Consensus 377 ~~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTTR~-~~va~~-~~~~~~~~l~~L~~~~s~~LF~~~af~~~~ 454 (1113)
.+++-++|+|++...+....+.+...+.....+.++|++|.+ ..+... ......+++++++.++....+.+.+-..+
T Consensus 116 ~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEg- 194 (702)
T PRK14960 116 QGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQ- 194 (702)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcC-
Confidence 356678999999877656677777666554455667766655 323211 12236899999999998887776653322
Q ss_pred CCCchhHHHHHHHHHHHhCCChHHHHH
Q 046764 455 FSMQQSLKDISKKIVIRCNGLPLAAKT 481 (1113)
Q Consensus 455 ~~~~~~l~~i~~~I~~~c~GlPLAi~~ 481 (1113)
... -.+....|++.++|-+-.+..
T Consensus 195 I~i---d~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 195 IAA---DQDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred CCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 111 134567788899997744443
No 114
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=76.94 E-value=26 Score=40.98 Aligned_cols=96 Identities=16% Similarity=0.229 Sum_probs=62.4
Q ss_pred CcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEecCC-hhhHhhh-CCCceEecCCCCHHHHHHHHHhcccCCCCC
Q 046764 378 GKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTTRN-RDVAAIM-GSVRDYPLKESTKDDCLQVFTQHCLGMRDF 455 (1113)
Q Consensus 378 ~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTTR~-~~va~~~-~~~~~~~l~~L~~~~s~~LF~~~af~~~~~ 455 (1113)
+++-++++|++...+....+.+...+.....+..+|++|.+ ..+.... .....+.+++++.++....+.+.. + .
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-~---~ 191 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD-G---V 191 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc-C---C
Confidence 45557888999887666666666655444445656555555 4444332 223689999999999988876432 1 1
Q ss_pred CCchhHHHHHHHHHHHhCCChHHHHHH
Q 046764 456 SMQQSLKDISKKIVIRCNGLPLAAKTL 482 (1113)
Q Consensus 456 ~~~~~l~~i~~~I~~~c~GlPLAi~~i 482 (1113)
+ .+.+..+++.++|-|.....+
T Consensus 192 ---~--~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 192 ---D--PETARRAARASQGHIGRARRL 213 (394)
T ss_pred ---C--HHHHHHHHHHcCCCHHHHHHH
Confidence 1 244678899999999655443
No 115
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=76.64 E-value=8.1 Score=48.03 Aligned_cols=113 Identities=17% Similarity=0.169 Sum_probs=73.4
Q ss_pred HHHHHHHHhcCcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEE--ecCChhh-Hhhh-CCCceEecCCCCHHHHHH
Q 046764 368 LQEKLKNQMSGKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIV--TTRNRDV-AAIM-GSVRDYPLKESTKDDCLQ 443 (1113)
Q Consensus 368 l~~~l~~~L~~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIiv--TTR~~~v-a~~~-~~~~~~~l~~L~~~~s~~ 443 (1113)
.+..+.+.++++++.++-|+.|..+...|+.+...+....+...|+| ||++... .... .....+.+.+++.+|.+.
T Consensus 281 ~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~ 360 (615)
T TIGR02903 281 LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIAL 360 (615)
T ss_pred HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHH
Confidence 56778888999999999888887766779988887777666666666 6664432 1111 112467889999999999
Q ss_pred HHHhcccCCCCCCCchhHHHHHHHHHHHhCCChHHHHHHHh
Q 046764 444 VFTQHCLGMRDFSMQQSLKDISKKIVIRCNGLPLAAKTLAG 484 (1113)
Q Consensus 444 LF~~~af~~~~~~~~~~l~~i~~~I~~~c~GlPLAi~~ig~ 484 (1113)
++.+.+-.. +.... .++...|.+.+..-+-|+..++.
T Consensus 361 Il~~~a~~~-~v~ls---~eal~~L~~ys~~gRraln~L~~ 397 (615)
T TIGR02903 361 IVLNAAEKI-NVHLA---AGVEELIARYTIEGRKAVNILAD 397 (615)
T ss_pred HHHHHHHHc-CCCCC---HHHHHHHHHCCCcHHHHHHHHHH
Confidence 999875321 11111 24445555555444556655543
No 116
>PRK06620 hypothetical protein; Validated
Probab=76.42 E-value=16 Score=38.78 Aligned_cols=131 Identities=8% Similarity=0.017 Sum_probs=71.3
Q ss_pred EEEEEEeccc----chhhhcccccCCcCCCCCHHHHHHHHHHHhcCcEEEEEEecCCCCChhhhhhhcccccCCCCCcEE
Q 046764 337 HLLSLSIMMP----NIIRFIATADQPVNGTDELGLLQEKLKNQMSGKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQI 412 (1113)
Q Consensus 337 ~vi~I~G~gG----tLA~~vi~~~~~~~~~~~~~~l~~~l~~~L~~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrI 412 (1113)
+.+-|||..| +|++.+-.... .......... .+..+ +.-++++||+........-.+...+. ..|..|
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~~~~~~~~~~---~~~~~-~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~i 116 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--AYIIKDIFFN---EEILE-KYNAFIIEDIENWQEPALLHIFNIIN--EKQKYL 116 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--CEEcchhhhc---hhHHh-cCCEEEEeccccchHHHHHHHHHHHH--hcCCEE
Confidence 3467899998 78876521111 0000000000 11122 33578899995321111222221221 346789
Q ss_pred EEecCC-------hhhHhhhCCCceEecCCCCHHHHHHHHHhcccCCCCCCCchhHHHHHHHHHHHhCCChHHH
Q 046764 413 IVTTRN-------RDVAAIMGSVRDYPLKESTKDDCLQVFTQHCLGMRDFSMQQSLKDISKKIVIRCNGLPLAA 479 (1113)
Q Consensus 413 ivTTR~-------~~va~~~~~~~~~~l~~L~~~~s~~LF~~~af~~~~~~~~~~l~~i~~~I~~~c~GlPLAi 479 (1113)
|+|++. .+..+++....++++++++.++-..+..+.+-. .+... -+++..-|++.+.|---++
T Consensus 117 lits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~-~~l~l---~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 117 LLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSI-SSVTI---SRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred EEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH-cCCCC---CHHHHHHHHHHccCCHHHH
Confidence 999874 334455555678999999999988888776532 22111 1466777888877654433
No 117
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=76.16 E-value=18 Score=45.02 Aligned_cols=101 Identities=12% Similarity=0.136 Sum_probs=61.6
Q ss_pred cCcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEecCC-hhhHhhh-CCCceEecCCCCHHHHHHHHHhcccCCCC
Q 046764 377 SGKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTTRN-RDVAAIM-GSVRDYPLKESTKDDCLQVFTQHCLGMRD 454 (1113)
Q Consensus 377 ~~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTTR~-~~va~~~-~~~~~~~l~~L~~~~s~~LF~~~af~~~~ 454 (1113)
.+++-++|+|++...+....+.+...+..-....++|++|.+ ..+-... +....+++++++.++-...+.+.+-. .+
T Consensus 117 ~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~k-Eg 195 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDS-EK 195 (709)
T ss_pred hCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHH-cC
Confidence 356678999999776544566666655443345566666544 3222111 12256889999999988877766532 22
Q ss_pred CCCchhHHHHHHHHHHHhCCChHHHHH
Q 046764 455 FSMQQSLKDISKKIVIRCNGLPLAAKT 481 (1113)
Q Consensus 455 ~~~~~~l~~i~~~I~~~c~GlPLAi~~ 481 (1113)
... -.+....|++.++|-+--+..
T Consensus 196 i~i---d~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 196 IAY---EPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred CCc---CHHHHHHHHHHhCCCHHHHHH
Confidence 111 134677889999998854443
No 118
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=74.92 E-value=19 Score=41.53 Aligned_cols=101 Identities=15% Similarity=0.181 Sum_probs=63.5
Q ss_pred CcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEecCChh-hHhhh-CCCceEecCCCCHHHHHHHHHhcccCCCCC
Q 046764 378 GKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTTRNRD-VAAIM-GSVRDYPLKESTKDDCLQVFTQHCLGMRDF 455 (1113)
Q Consensus 378 ~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTTR~~~-va~~~-~~~~~~~l~~L~~~~s~~LF~~~af~~~~~ 455 (1113)
+++-+||+|++...+....+.+...+......+.+|++|.+.+ +.... .....++.++++.++........+-..+-
T Consensus 116 ~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~- 194 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI- 194 (355)
T ss_pred CCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC-
Confidence 4555888999866544556666666654445666666665433 33222 22357899999999988877776532221
Q ss_pred CCchhHHHHHHHHHHHhCCChHHHHHH
Q 046764 456 SMQQSLKDISKKIVIRCNGLPLAAKTL 482 (1113)
Q Consensus 456 ~~~~~l~~i~~~I~~~c~GlPLAi~~i 482 (1113)
... .+.+..+++.++|-|..+...
T Consensus 195 ~i~---~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 195 KIE---DEALELIARAADGSLRDALSL 218 (355)
T ss_pred CCC---HHHHHHHHHHcCCChHHHHHH
Confidence 111 356778889999988655543
No 119
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=74.52 E-value=25 Score=44.91 Aligned_cols=102 Identities=13% Similarity=0.156 Sum_probs=66.5
Q ss_pred cCcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEecCC-hhhHhh-hCCCceEecCCCCHHHHHHHHHhcccCCCC
Q 046764 377 SGKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTTRN-RDVAAI-MGSVRDYPLKESTKDDCLQVFTQHCLGMRD 454 (1113)
Q Consensus 377 ~~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTTR~-~~va~~-~~~~~~~~l~~L~~~~s~~LF~~~af~~~~ 454 (1113)
.+++-++|||++...+...++.+...+..-....++|.+|.+ ..+... ......|++++++.++....+.+.+-. ++
T Consensus 117 ~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~-Eg 195 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQ-EQ 195 (944)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHH-cC
Confidence 467779999999888767778777666544445555555544 444322 122368999999999998888765422 11
Q ss_pred CCCchhHHHHHHHHHHHhCCChH-HHHHH
Q 046764 455 FSMQQSLKDISKKIVIRCNGLPL-AAKTL 482 (1113)
Q Consensus 455 ~~~~~~l~~i~~~I~~~c~GlPL-Ai~~i 482 (1113)
.. --.+....|++.++|.|- |+..+
T Consensus 196 I~---~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 196 LP---FEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred CC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 11 123567788999999885 44443
No 120
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=73.51 E-value=25 Score=40.02 Aligned_cols=100 Identities=13% Similarity=0.053 Sum_probs=60.1
Q ss_pred CcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEecCCh-hhHhhh-CCCceEecCCCCHHHHHHHHHhcccCCCCC
Q 046764 378 GKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTTRNR-DVAAIM-GSVRDYPLKESTKDDCLQVFTQHCLGMRDF 455 (1113)
Q Consensus 378 ~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTTR~~-~va~~~-~~~~~~~l~~L~~~~s~~LF~~~af~~~~~ 455 (1113)
+.+-+||+||+...+....+.+...+......+++|+||... .+.... .....+++.+++.++....+.+.+-..+ .
T Consensus 124 ~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~-~ 202 (337)
T PRK12402 124 ADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEG-V 202 (337)
T ss_pred CCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcC-C
Confidence 345589999997664344445554444334456777777542 222222 1225788999999998888877653222 1
Q ss_pred CCchhHHHHHHHHHHHhCCChHHHHH
Q 046764 456 SMQQSLKDISKKIVIRCNGLPLAAKT 481 (1113)
Q Consensus 456 ~~~~~l~~i~~~I~~~c~GlPLAi~~ 481 (1113)
.. -.+....+++.++|-+-.+..
T Consensus 203 ~~---~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 203 DY---DDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred CC---CHHHHHHHHHHcCCCHHHHHH
Confidence 11 135677788888887654443
No 121
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=73.42 E-value=15 Score=39.42 Aligned_cols=144 Identities=13% Similarity=0.070 Sum_probs=74.2
Q ss_pred EEEEEEeccc----chhhhccccc---CCcCCCCCHHHHHHHHHHHhcCcEEEEEEecCCCCChhhhhhhcccccCC-CC
Q 046764 337 HLLSLSIMMP----NIIRFIATAD---QPVNGTDELGLLQEKLKNQMSGKKFLLVLGDVWNENYSDWDSLSLPFEAG-AP 408 (1113)
Q Consensus 337 ~vi~I~G~gG----tLA~~vi~~~---~~~~~~~~~~~l~~~l~~~L~~kr~LiVLDDv~~~~~~~w~~l~~~l~~~-~~ 408 (1113)
+.+.|+|..| +||+.+.... .......+.......+ .... +.-+||+||+...+...-+.+...+... ..
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~~-~~~~-~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~ 120 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLAF-DFDP-EAELYAVDDVERLDDAQQIALFNLFNRVRAH 120 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHHH-hhcc-cCCEEEEeChhhcCchHHHHHHHHHHHHHHc
Confidence 4567889888 7888772111 0000111111122221 1222 2347889999654322222333333211 23
Q ss_pred Cc-EEEEecCChhhH--------hhhCCCceEecCCCCHHHHHHHHHhcccCCCCCCCchhHHHHHHHHHHHhCCChHHH
Q 046764 409 GS-QIIVTTRNRDVA--------AIMGSVRDYPLKESTKDDCLQVFTQHCLGMRDFSMQQSLKDISKKIVIRCNGLPLAA 479 (1113)
Q Consensus 409 gS-rIivTTR~~~va--------~~~~~~~~~~l~~L~~~~s~~LF~~~af~~~~~~~~~~l~~i~~~I~~~c~GlPLAi 479 (1113)
|. .||+|++..... ..+.....+++.++++++-..+..+.+ ....... -++....+++.+.|.+..+
T Consensus 121 ~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~-~~~~v~l---~~~al~~L~~~~~gn~~~l 196 (227)
T PRK08903 121 GQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAA-AERGLQL---ADEVPDYLLTHFRRDMPSL 196 (227)
T ss_pred CCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHH-HHcCCCC---CHHHHHHHHHhccCCHHHH
Confidence 44 466776643322 233334689999999987666655432 1112111 1356777888899998887
Q ss_pred HHHHhhh
Q 046764 480 KTLAGLL 486 (1113)
Q Consensus 480 ~~ig~~L 486 (1113)
..+-..|
T Consensus 197 ~~~l~~l 203 (227)
T PRK08903 197 MALLDAL 203 (227)
T ss_pred HHHHHHH
Confidence 7655544
No 122
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=72.87 E-value=20 Score=43.67 Aligned_cols=104 Identities=14% Similarity=0.130 Sum_probs=65.5
Q ss_pred cCcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEE-EecCChhhHhhh-CCCceEecCCCCHHHHHHHHHhcccCCCC
Q 046764 377 SGKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQII-VTTRNRDVAAIM-GSVRDYPLKESTKDDCLQVFTQHCLGMRD 454 (1113)
Q Consensus 377 ~~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIi-vTTR~~~va~~~-~~~~~~~l~~L~~~~s~~LF~~~af~~~~ 454 (1113)
.+++-++|+|++...+...++.+...+......+++| +||....+.... ....++++++++.++-.....+.+-. .+
T Consensus 117 ~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~-eg 195 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAK-EN 195 (546)
T ss_pred cCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHH-cC
Confidence 4566799999998776667777777776544455555 555544444222 22368999999999977666654322 22
Q ss_pred CCCchhHHHHHHHHHHHhCCCh-HHHHHHHh
Q 046764 455 FSMQQSLKDISKKIVIRCNGLP-LAAKTLAG 484 (1113)
Q Consensus 455 ~~~~~~l~~i~~~I~~~c~GlP-LAi~~ig~ 484 (1113)
.. --.+....|++.++|-+ -|+..+-.
T Consensus 196 i~---~e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 196 IN---SDEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred CC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 11 11345567888999965 45555543
No 123
>PRK04195 replication factor C large subunit; Provisional
Probab=72.85 E-value=28 Score=42.02 Aligned_cols=138 Identities=13% Similarity=0.104 Sum_probs=73.5
Q ss_pred EEEEEEeccc----chhhhcccccC------CcCCCCCHHHHHHHHHHH-----hc-CcEEEEEEecCCCCCh----hhh
Q 046764 337 HLLSLSIMMP----NIIRFIATADQ------PVNGTDELGLLQEKLKNQ-----MS-GKKFLLVLGDVWNENY----SDW 396 (1113)
Q Consensus 337 ~vi~I~G~gG----tLA~~vi~~~~------~~~~~~~~~~l~~~l~~~-----L~-~kr~LiVLDDv~~~~~----~~w 396 (1113)
+.+-|+|..| |+|+.+..... +..+....+.+...+... +. .++-+||+|+++.... ..+
T Consensus 40 ~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~ 119 (482)
T PRK04195 40 KALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGGA 119 (482)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccchhHH
Confidence 4567899988 77777711110 001122223333333222 22 2677999999977532 224
Q ss_pred hhhcccccCCCCCcEEEEecCC-hhhHh-hh-CCCceEecCCCCHHHHHHHHHhcccCCCCCCCchhHHHHHHHHHHHhC
Q 046764 397 DSLSLPFEAGAPGSQIIVTTRN-RDVAA-IM-GSVRDYPLKESTKDDCLQVFTQHCLGMRDFSMQQSLKDISKKIVIRCN 473 (1113)
Q Consensus 397 ~~l~~~l~~~~~gSrIivTTR~-~~va~-~~-~~~~~~~l~~L~~~~s~~LF~~~af~~~~~~~~~~l~~i~~~I~~~c~ 473 (1113)
..+...+.. .+..||+|+.+ ..+.. .. .....+++.+++.++......+.+...+ .... .+....|++.++
T Consensus 120 ~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~eg-i~i~---~eaL~~Ia~~s~ 193 (482)
T PRK04195 120 RAILELIKK--AKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEG-IECD---DEALKEIAERSG 193 (482)
T ss_pred HHHHHHHHc--CCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHcC
Confidence 444444432 23345555543 22211 11 2235789999999988887776653322 2222 255677788888
Q ss_pred CChHHHH
Q 046764 474 GLPLAAK 480 (1113)
Q Consensus 474 GlPLAi~ 480 (1113)
|-.-++.
T Consensus 194 GDlR~ai 200 (482)
T PRK04195 194 GDLRSAI 200 (482)
T ss_pred CCHHHHH
Confidence 7654443
No 124
>COG3903 Predicted ATPase [General function prediction only]
Probab=72.03 E-value=1.5 Score=50.00 Aligned_cols=121 Identities=17% Similarity=0.227 Sum_probs=79.6
Q ss_pred HHHHHHHHhcCcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEecCChhhHhhhCCCceEecCCCCHH-HHHHHHH
Q 046764 368 LQEKLKNQMSGKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTTRNRDVAAIMGSVRDYPLKESTKD-DCLQVFT 446 (1113)
Q Consensus 368 l~~~l~~~L~~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTTR~~~va~~~~~~~~~~l~~L~~~-~s~~LF~ 446 (1113)
....+.....++|.++|+||..+. .+.-..+..++..+...-+|+.|+|..-. ...+.++.+.+|+.. ++..+|.
T Consensus 77 ~~~~~~~~~~~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~ 152 (414)
T COG3903 77 AVDTLVRRIGDRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFV 152 (414)
T ss_pred HHHHHHHHHhhhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHH
Confidence 455677788899999999997433 11222233344445555678888886433 234567888888766 6889988
Q ss_pred hcccCCCC-CCCchhHHHHHHHHHHHhCCChHHHHHHHhhhcCCCCc
Q 046764 447 QHCLGMRD-FSMQQSLKDISKKIVIRCNGLPLAAKTLAGLLRGKNDP 492 (1113)
Q Consensus 447 ~~af~~~~-~~~~~~l~~i~~~I~~~c~GlPLAi~~ig~~L~~~~~~ 492 (1113)
..+..... ......-.....+|.++..|.|+||...++..+.-...
T Consensus 153 ~ra~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~ 199 (414)
T COG3903 153 CRAVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPD 199 (414)
T ss_pred HHHHHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHH
Confidence 77632221 11122334678899999999999999988877665443
No 125
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=72.01 E-value=17 Score=42.68 Aligned_cols=101 Identities=16% Similarity=0.217 Sum_probs=64.4
Q ss_pred CcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEec-CChhhHhhhC-CCceEecCCCCHHHHHHHHHhcccCCCCC
Q 046764 378 GKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTT-RNRDVAAIMG-SVRDYPLKESTKDDCLQVFTQHCLGMRDF 455 (1113)
Q Consensus 378 ~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTT-R~~~va~~~~-~~~~~~l~~L~~~~s~~LF~~~af~~~~~ 455 (1113)
+++-++|+|++...+...|+.+...+....+.+.+|++| +...+..... ...+++++++++++....+...+-..+ .
T Consensus 126 ~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g-~ 204 (397)
T PRK14955 126 GRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEG-I 204 (397)
T ss_pred CCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC-C
Confidence 456688999998775567888877776555566665554 4444443221 125789999999988777766542211 1
Q ss_pred CCchhHHHHHHHHHHHhCCChH-HHHHH
Q 046764 456 SMQQSLKDISKKIVIRCNGLPL-AAKTL 482 (1113)
Q Consensus 456 ~~~~~l~~i~~~I~~~c~GlPL-Ai~~i 482 (1113)
. --.+.+..+++.++|-+- |+..+
T Consensus 205 ~---i~~~al~~l~~~s~g~lr~a~~~L 229 (397)
T PRK14955 205 S---VDADALQLIGRKAQGSMRDAQSIL 229 (397)
T ss_pred C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 113567888999999774 44433
No 126
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=71.89 E-value=36 Score=41.30 Aligned_cols=114 Identities=11% Similarity=0.148 Sum_probs=69.8
Q ss_pred HHHHHHHHHHH----hcCcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEecCCh-hhHhhh-CCCceEecCCCCH
Q 046764 365 LGLLQEKLKNQ----MSGKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTTRNR-DVAAIM-GSVRDYPLKESTK 438 (1113)
Q Consensus 365 ~~~l~~~l~~~----L~~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTTR~~-~va~~~-~~~~~~~l~~L~~ 438 (1113)
.+++.+.+... ..+++-++|+|++...+.+..+.+...+..-...+++|++|.+. .+.... .....+++++++.
T Consensus 99 Id~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~ 178 (535)
T PRK08451 99 IDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQ 178 (535)
T ss_pred HHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCH
Confidence 45555554331 12556688999998877667777776665544556666666542 222111 1236899999999
Q ss_pred HHHHHHHHhcccCCCCCCCchhHHHHHHHHHHHhCCChHHHHHH
Q 046764 439 DDCLQVFTQHCLGMRDFSMQQSLKDISKKIVIRCNGLPLAAKTL 482 (1113)
Q Consensus 439 ~~s~~LF~~~af~~~~~~~~~~l~~i~~~I~~~c~GlPLAi~~i 482 (1113)
++......+.+-..+ ... -.+.+..|++.++|-+--+..+
T Consensus 179 ~ei~~~L~~Il~~EG-i~i---~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 179 NSIISHLKTILEKEG-VSY---EPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred HHHHHHHHHHHHHcC-CCC---CHHHHHHHHHHcCCcHHHHHHH
Confidence 998777766542222 111 1356778899999988544443
No 127
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=71.47 E-value=29 Score=41.59 Aligned_cols=104 Identities=13% Similarity=0.148 Sum_probs=63.0
Q ss_pred cCcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEE-ecCChhhHhhh-CCCceEecCCCCHHHHHHHHHhcccCCCC
Q 046764 377 SGKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIV-TTRNRDVAAIM-GSVRDYPLKESTKDDCLQVFTQHCLGMRD 454 (1113)
Q Consensus 377 ~~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIiv-TTR~~~va~~~-~~~~~~~l~~L~~~~s~~LF~~~af~~~~ 454 (1113)
.+++-++|+|++..-+....+.+...+........+|+ ||....+.... ....++++++++.++-...+.+.+...+-
T Consensus 115 ~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi 194 (472)
T PRK14962 115 EGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI 194 (472)
T ss_pred cCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC
Confidence 35667999999976544556666666544333444444 44334443332 22368999999999988887776533221
Q ss_pred CCCchhHHHHHHHHHHHhCC-ChHHHHHHHh
Q 046764 455 FSMQQSLKDISKKIVIRCNG-LPLAAKTLAG 484 (1113)
Q Consensus 455 ~~~~~~l~~i~~~I~~~c~G-lPLAi~~ig~ 484 (1113)
.. -.+....|++.++| ++.|+..+..
T Consensus 195 -~i---~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 195 -EI---DREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred -CC---CHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 11 13456778887754 5677776654
No 128
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=71.40 E-value=25 Score=41.85 Aligned_cols=102 Identities=13% Similarity=0.098 Sum_probs=65.6
Q ss_pred cCcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEE-EecCChhhHhhh-CCCceEecCCCCHHHHHHHHHhcccCCCC
Q 046764 377 SGKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQII-VTTRNRDVAAIM-GSVRDYPLKESTKDDCLQVFTQHCLGMRD 454 (1113)
Q Consensus 377 ~~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIi-vTTR~~~va~~~-~~~~~~~l~~L~~~~s~~LF~~~af~~~~ 454 (1113)
.+++-++|+|++...+...++.+...+........+| .||....+.... .....|.+++++.++-.+.+.+.+-..+
T Consensus 119 ~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Eg- 197 (484)
T PRK14956 119 GGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIEN- 197 (484)
T ss_pred cCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcC-
Confidence 4566689999998887777888877665433344444 555545543332 2236799999999988877776653222
Q ss_pred CCCchhHHHHHHHHHHHhCCChH-HHHHH
Q 046764 455 FSMQQSLKDISKKIVIRCNGLPL-AAKTL 482 (1113)
Q Consensus 455 ~~~~~~l~~i~~~I~~~c~GlPL-Ai~~i 482 (1113)
... -.+....|++.++|-+- |+..+
T Consensus 198 i~~---e~eAL~~Ia~~S~Gd~RdAL~lL 223 (484)
T PRK14956 198 VQY---DQEGLFWIAKKGDGSVRDMLSFM 223 (484)
T ss_pred CCC---CHHHHHHHHHHcCChHHHHHHHH
Confidence 111 13567889999999884 44443
No 129
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=70.50 E-value=37 Score=39.38 Aligned_cols=102 Identities=13% Similarity=0.179 Sum_probs=61.1
Q ss_pred CcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEec-CChhhHhhh-CCCceEecCCCCHHHHHHHHHhcccCCCCC
Q 046764 378 GKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTT-RNRDVAAIM-GSVRDYPLKESTKDDCLQVFTQHCLGMRDF 455 (1113)
Q Consensus 378 ~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTT-R~~~va~~~-~~~~~~~l~~L~~~~s~~LF~~~af~~~~~ 455 (1113)
+++-+|++|++.......++.+...+......+.+|++| +...+.... ....+++.+++++++....+...+...+-
T Consensus 107 ~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~- 185 (367)
T PRK14970 107 GKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGI- 185 (367)
T ss_pred CCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCC-
Confidence 455579999997664455666655554333345555544 433333221 22357999999999988888776643221
Q ss_pred CCchhHHHHHHHHHHHhCCChH-HHHHHH
Q 046764 456 SMQQSLKDISKKIVIRCNGLPL-AAKTLA 483 (1113)
Q Consensus 456 ~~~~~l~~i~~~I~~~c~GlPL-Ai~~ig 483 (1113)
... .+....+++.++|-+- |+..+.
T Consensus 186 ~i~---~~al~~l~~~~~gdlr~~~~~le 211 (367)
T PRK14970 186 KFE---DDALHIIAQKADGALRDALSIFD 211 (367)
T ss_pred CCC---HHHHHHHHHhCCCCHHHHHHHHH
Confidence 111 3567778888998654 444443
No 130
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=70.05 E-value=8.6 Score=47.04 Aligned_cols=90 Identities=8% Similarity=0.102 Sum_probs=52.8
Q ss_pred EEEEecCCCCCh-hhhhh-hcccccC-CCCCcEEEEecCC---------hhhHhhhCCCceEecCCCCHHHHHHHHHhcc
Q 046764 382 LLVLGDVWNENY-SDWDS-LSLPFEA-GAPGSQIIVTTRN---------RDVAAIMGSVRDYPLKESTKDDCLQVFTQHC 449 (1113)
Q Consensus 382 LiVLDDv~~~~~-~~w~~-l~~~l~~-~~~gSrIivTTR~---------~~va~~~~~~~~~~l~~L~~~~s~~LF~~~a 449 (1113)
+|||||+..... ..|+. +...+.. ...|..|||||+. .++...+...-++++++.+.+.-..++.+++
T Consensus 380 LLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka 459 (617)
T PRK14086 380 ILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKA 459 (617)
T ss_pred EEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHH
Confidence 789999965422 22322 2221211 1235568888875 2344555666789999999999999998886
Q ss_pred cCCCCCCCchhHHHHHHHHHHHhCCC
Q 046764 450 LGMRDFSMQQSLKDISKKIVIRCNGL 475 (1113)
Q Consensus 450 f~~~~~~~~~~l~~i~~~I~~~c~Gl 475 (1113)
-..+ .... +++..-|++.+.+.
T Consensus 460 ~~r~-l~l~---~eVi~yLa~r~~rn 481 (617)
T PRK14086 460 VQEQ-LNAP---PEVLEFIASRISRN 481 (617)
T ss_pred HhcC-CCCC---HHHHHHHHHhccCC
Confidence 4322 2111 34555555555443
No 131
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=68.48 E-value=15 Score=43.92 Aligned_cols=103 Identities=9% Similarity=0.051 Sum_probs=63.6
Q ss_pred EEEEEEecCCCCCh-hhh-hhhcccccC-CCCCcEEEEecCC---------hhhHhhhCCCceEecCCCCHHHHHHHHHh
Q 046764 380 KFLLVLGDVWNENY-SDW-DSLSLPFEA-GAPGSQIIVTTRN---------RDVAAIMGSVRDYPLKESTKDDCLQVFTQ 447 (1113)
Q Consensus 380 r~LiVLDDv~~~~~-~~w-~~l~~~l~~-~~~gSrIivTTR~---------~~va~~~~~~~~~~l~~L~~~~s~~LF~~ 447 (1113)
.-++|+||+..... ..| +.+...+.. ...|..||+|+.. +.+..++...-++++++++.++-..++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 34888999965421 122 222222221 1235578888653 34445555667899999999999999998
Q ss_pred cccCCCCCCCchhHHHHHHHHHHHhCCChHHHHHHHh
Q 046764 448 HCLGMRDFSMQQSLKDISKKIVIRCNGLPLAAKTLAG 484 (1113)
Q Consensus 448 ~af~~~~~~~~~~l~~i~~~I~~~c~GlPLAi~~ig~ 484 (1113)
++-..+ .. ..--+++..-|++.++|.|-.+..+-.
T Consensus 287 ~~~~~g-l~-~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 287 EIKNQN-IK-QEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHhcC-CC-CCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 873322 10 011246788899999998877665443
No 132
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=67.63 E-value=70 Score=36.32 Aligned_cols=94 Identities=10% Similarity=0.120 Sum_probs=63.2
Q ss_pred cCcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEecCC-hhhHhhh-CCCceEecCCCCHHHHHHHHHhcccCCCC
Q 046764 377 SGKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTTRN-RDVAAIM-GSVRDYPLKESTKDDCLQVFTQHCLGMRD 454 (1113)
Q Consensus 377 ~~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTTR~-~~va~~~-~~~~~~~l~~L~~~~s~~LF~~~af~~~~ 454 (1113)
.+++-.+|+|++...+......+...+..-..++.+|.+|.+ ..+.... .-...+.+.+++.++..+.+.... +..
T Consensus 105 ~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~-~~~- 182 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQS-SAE- 182 (325)
T ss_pred cCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHh-ccC-
Confidence 356667889999888777777777766555556666666665 3444332 223689999999999988777653 111
Q ss_pred CCCchhHHHHHHHHHHHhCCChHHH
Q 046764 455 FSMQQSLKDISKKIVIRCNGLPLAA 479 (1113)
Q Consensus 455 ~~~~~~l~~i~~~I~~~c~GlPLAi 479 (1113)
. ..+...++.++|.|..+
T Consensus 183 ----~---~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 183 ----I---SEILTALRINYGRPLLA 200 (325)
T ss_pred ----h---HHHHHHHHHcCCCHHHH
Confidence 1 12456678899999633
No 133
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.08 E-value=34 Score=42.18 Aligned_cols=106 Identities=9% Similarity=0.112 Sum_probs=68.2
Q ss_pred cCcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEecCC-hhhHhhh-CCCceEecCCCCHHHHHHHHHhcccCCCC
Q 046764 377 SGKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTTRN-RDVAAIM-GSVRDYPLKESTKDDCLQVFTQHCLGMRD 454 (1113)
Q Consensus 377 ~~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTTR~-~~va~~~-~~~~~~~l~~L~~~~s~~LF~~~af~~~~ 454 (1113)
.+++-+||+|++...+...++.+...+..-.....+|++|.. ..+.... .....+++++++.++....+.+.+...+-
T Consensus 117 ~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi 196 (624)
T PRK14959 117 EGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV 196 (624)
T ss_pred cCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC
Confidence 456678999999877666677777766543344555555544 4444322 12257899999999988888776533221
Q ss_pred CCCchhHHHHHHHHHHHhCCCh-HHHHHHHhhh
Q 046764 455 FSMQQSLKDISKKIVIRCNGLP-LAAKTLAGLL 486 (1113)
Q Consensus 455 ~~~~~~l~~i~~~I~~~c~GlP-LAi~~ig~~L 486 (1113)
.. -.+.+..|++.++|-+ .|+..+...+
T Consensus 197 -~i---d~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 197 -DY---DPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred -CC---CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 11 1356777888999854 7777776544
No 134
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=66.41 E-value=7.8 Score=37.42 Aligned_cols=45 Identities=9% Similarity=-0.028 Sum_probs=26.2
Q ss_pred hcCcEEEEEEecCCCCCh---hhhhhhcccccCC---CCCcEEEEecCChh
Q 046764 376 MSGKKFLLVLGDVWNENY---SDWDSLSLPFEAG---APGSQIIVTTRNRD 420 (1113)
Q Consensus 376 L~~kr~LiVLDDv~~~~~---~~w~~l~~~l~~~---~~gSrIivTTR~~~ 420 (1113)
...+..++|+||++.... ..+..+...+... ..+.+||+||....
T Consensus 81 ~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 81 EKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 345678999999986421 2222222222221 35788888888653
No 135
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.41 E-value=32 Score=42.65 Aligned_cols=103 Identities=16% Similarity=0.209 Sum_probs=63.5
Q ss_pred cCcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEE-EecCChhhHhhh-CCCceEecCCCCHHHHHHHHHhcccCCCC
Q 046764 377 SGKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQII-VTTRNRDVAAIM-GSVRDYPLKESTKDDCLQVFTQHCLGMRD 454 (1113)
Q Consensus 377 ~~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIi-vTTR~~~va~~~-~~~~~~~l~~L~~~~s~~LF~~~af~~~~ 454 (1113)
.+++-++|+|++...+....+.+...+..-...+.+| +|++...+.... ....+++.++++.++....+.+.+-..+.
T Consensus 125 ~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi 204 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI 204 (620)
T ss_pred cCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 3455578999997776566777777665543445554 455545554332 33478999999999877766655422111
Q ss_pred CCCchhHHHHHHHHHHHhCCCh-HHHHHHH
Q 046764 455 FSMQQSLKDISKKIVIRCNGLP-LAAKTLA 483 (1113)
Q Consensus 455 ~~~~~~l~~i~~~I~~~c~GlP-LAi~~ig 483 (1113)
.. -.+.+..|++.++|-. .|+..+-
T Consensus 205 -~I---~~eal~~La~~s~Gdlr~al~eLe 230 (620)
T PRK14954 205 -QI---DADALQLIARKAQGSMRDAQSILD 230 (620)
T ss_pred -CC---CHHHHHHHHHHhCCCHHHHHHHHH
Confidence 11 1356778899999954 4444443
No 136
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.41 E-value=44 Score=40.15 Aligned_cols=100 Identities=16% Similarity=0.177 Sum_probs=65.0
Q ss_pred cCcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEec-CChhhHhhh-CCCceEecCCCCHHHHHHHHHhcccCCCC
Q 046764 377 SGKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTT-RNRDVAAIM-GSVRDYPLKESTKDDCLQVFTQHCLGMRD 454 (1113)
Q Consensus 377 ~~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTT-R~~~va~~~-~~~~~~~l~~L~~~~s~~LF~~~af~~~~ 454 (1113)
.+++-++|+|++...+....+.+...+..-.+.+++|.+| ..+.+.... .....+++++++.++-...+.+.+-..+.
T Consensus 114 ~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi 193 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI 193 (491)
T ss_pred cCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC
Confidence 3566689999997766566777776665544556665554 445554432 23368999999999988888776533221
Q ss_pred CCCchhHHHHHHHHHHHhCCChHHHH
Q 046764 455 FSMQQSLKDISKKIVIRCNGLPLAAK 480 (1113)
Q Consensus 455 ~~~~~~l~~i~~~I~~~c~GlPLAi~ 480 (1113)
.. -.+....|++.++|-+-.+.
T Consensus 194 -~i---~~eAL~lIa~~s~GslR~al 215 (491)
T PRK14964 194 -EH---DEESLKLIAENSSGSMRNAL 215 (491)
T ss_pred -CC---CHHHHHHHHHHcCCCHHHHH
Confidence 11 13456788999998775443
No 137
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=66.17 E-value=23 Score=40.67 Aligned_cols=99 Identities=13% Similarity=0.179 Sum_probs=64.1
Q ss_pred CcEEEEEEecCCCCChhhhhhhcccccCCCCCcE-EEEecCChhhHhhh-CCCceEecCCCCHHHHHHHHHhcccCCCCC
Q 046764 378 GKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQ-IIVTTRNRDVAAIM-GSVRDYPLKESTKDDCLQVFTQHCLGMRDF 455 (1113)
Q Consensus 378 ~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSr-IivTTR~~~va~~~-~~~~~~~l~~L~~~~s~~LF~~~af~~~~~ 455 (1113)
+++-++|+|++...+....+.+...+.....+.. |++|++...+.... .....+.+.+++.++........... .+
T Consensus 140 g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~-~~- 217 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS-QG- 217 (351)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc-cC-
Confidence 5667899999988876667776666644333444 45554444343222 12268999999999999988874211 11
Q ss_pred CCchhHHHHHHHHHHHhCCChHHHHHH
Q 046764 456 SMQQSLKDISKKIVIRCNGLPLAAKTL 482 (1113)
Q Consensus 456 ~~~~~l~~i~~~I~~~c~GlPLAi~~i 482 (1113)
--.+....|++.++|.|.....+
T Consensus 218 ----~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 218 ----SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred ----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 11244678899999999765544
No 138
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=65.11 E-value=14 Score=44.08 Aligned_cols=71 Identities=13% Similarity=0.111 Sum_probs=42.2
Q ss_pred EEEEEecCCCCChhhh--hhhcccccC-CCCCcEEEEecCC---------hhhHhhhCCCceEecCCCCHHHHHHHHHhc
Q 046764 381 FLLVLGDVWNENYSDW--DSLSLPFEA-GAPGSQIIVTTRN---------RDVAAIMGSVRDYPLKESTKDDCLQVFTQH 448 (1113)
Q Consensus 381 ~LiVLDDv~~~~~~~w--~~l~~~l~~-~~~gSrIivTTR~---------~~va~~~~~~~~~~l~~L~~~~s~~LF~~~ 448 (1113)
-++++||+......+| +.+...+.. ...|..||+||.. +.+..++....++++++++.++-..++.++
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k 283 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERK 283 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHH
Confidence 4788999865421111 112221110 0135568887754 233444555578999999999999998887
Q ss_pred ccC
Q 046764 449 CLG 451 (1113)
Q Consensus 449 af~ 451 (1113)
+-.
T Consensus 284 ~~~ 286 (445)
T PRK12422 284 AEA 286 (445)
T ss_pred HHH
Confidence 633
No 139
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=64.29 E-value=3.6 Score=27.26 Aligned_cols=18 Identities=33% Similarity=0.624 Sum_probs=8.8
Q ss_pred CCcCeeee-ccccccccCC
Q 046764 1043 NNLQAFTI-CKNLVSFPKG 1060 (1113)
Q Consensus 1043 ~sL~~L~L-cn~L~slp~~ 1060 (1113)
++|+.|++ .|+++++|.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 34455555 5555555443
No 140
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=64.29 E-value=3.6 Score=27.26 Aligned_cols=18 Identities=33% Similarity=0.624 Sum_probs=8.8
Q ss_pred CCcCeeee-ccccccccCC
Q 046764 1043 NNLQAFTI-CKNLVSFPKG 1060 (1113)
Q Consensus 1043 ~sL~~L~L-cn~L~slp~~ 1060 (1113)
++|+.|++ .|+++++|.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 34455555 5555555443
No 141
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=63.22 E-value=34 Score=42.49 Aligned_cols=102 Identities=11% Similarity=0.106 Sum_probs=64.5
Q ss_pred cCcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEE-ecCChhhHhh-hCCCceEecCCCCHHHHHHHHHhcccCCCC
Q 046764 377 SGKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIV-TTRNRDVAAI-MGSVRDYPLKESTKDDCLQVFTQHCLGMRD 454 (1113)
Q Consensus 377 ~~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIiv-TTR~~~va~~-~~~~~~~~l~~L~~~~s~~LF~~~af~~~~ 454 (1113)
.+++-++|||++...+....+.+...+..-....++|. ||....+... ......|++++++.++....+.+.+-.. +
T Consensus 117 ~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e-~ 195 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAE-Q 195 (647)
T ss_pred cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHc-C
Confidence 46677899999988776777777666654434455544 4444444322 1223689999999999888777654211 1
Q ss_pred CCCchhHHHHHHHHHHHhCCChH-HHHHH
Q 046764 455 FSMQQSLKDISKKIVIRCNGLPL-AAKTL 482 (1113)
Q Consensus 455 ~~~~~~l~~i~~~I~~~c~GlPL-Ai~~i 482 (1113)
.. .-.+....|++.++|.+- |+..+
T Consensus 196 i~---~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 196 IP---FEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred CC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 11 112455778899999775 44443
No 142
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=62.86 E-value=16 Score=34.71 Aligned_cols=37 Identities=14% Similarity=0.025 Sum_probs=13.8
Q ss_pred ccCCCCCCcccccccCCCCC--cCcccCCCCCCceEEEcc
Q 046764 891 GCADTSSSLRVCLQCCNSLT--NNARVQLPLSLKDLSIAF 928 (1113)
Q Consensus 891 ~~~~~l~~L~~L~~~~N~L~--~~~~l~~l~~L~~L~Ls~ 928 (1113)
..+..+++|+.+.... .+. ....+..+++|+.+.+.+
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN 44 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhcccccccccccccc
Confidence 3444444444443332 233 334455555666666554
No 143
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=61.31 E-value=44 Score=35.52 Aligned_cols=138 Identities=17% Similarity=0.168 Sum_probs=73.0
Q ss_pred eEEEEEEeccc----chhhhc-------ccccCCcCCCCCHHHHHHHHHHHhcCcEEEEEEecCCCCChhhhhhhccccc
Q 046764 336 LHLLSLSIMMP----NIIRFI-------ATADQPVNGTDELGLLQEKLKNQMSGKKFLLVLGDVWNENYSDWDSLSLPFE 404 (1113)
Q Consensus 336 ~~vi~I~G~gG----tLA~~v-------i~~~~~~~~~~~~~~l~~~l~~~L~~kr~LiVLDDv~~~~~~~w~~l~~~l~ 404 (1113)
+.-+-.||+.| |||+-+ +..... .......++...+.. ++ ++-++.+|.+..-+..+-+.+..+..
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg-~~i~k~~dl~~il~~-l~-~~~ILFIDEIHRlnk~~qe~LlpamE 126 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIANELGVNFKITSG-PAIEKAGDLAAILTN-LK-EGDILFIDEIHRLNKAQQEILLPAME 126 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHHHCT--EEEEEC-CC--SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHH
T ss_pred cceEEEECCCccchhHHHHHHHhccCCCeEeccc-hhhhhHHHHHHHHHh-cC-CCcEEEEechhhccHHHHHHHHHHhc
Confidence 34566899999 888888 111110 112233445544443 33 44577889997654333333322221
Q ss_pred CC--------CC-----------CcEEEEecCChhhHhhhCCC--ceEecCCCCHHHHHHHHHhcccCCCCCCCchhHHH
Q 046764 405 AG--------AP-----------GSQIIVTTRNRDVAAIMGSV--RDYPLKESTKDDCLQVFTQHCLGMRDFSMQQSLKD 463 (1113)
Q Consensus 405 ~~--------~~-----------gSrIivTTR~~~va~~~~~~--~~~~l~~L~~~~s~~LF~~~af~~~~~~~~~~l~~ 463 (1113)
++ ++ =+-|=.|||...+....... -+.+++..+.+|-.+...+.|-.-+- +--++
T Consensus 127 d~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i----~i~~~ 202 (233)
T PF05496_consen 127 DGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI----EIDED 202 (233)
T ss_dssp CSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-----EE-HH
T ss_pred cCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC----CcCHH
Confidence 11 11 13456788886665544332 35689999999999999877633221 22357
Q ss_pred HHHHHHHHhCCChHHHH
Q 046764 464 ISKKIVIRCNGLPLAAK 480 (1113)
Q Consensus 464 i~~~I~~~c~GlPLAi~ 480 (1113)
.+.+|+++|.|-|--+.
T Consensus 203 ~~~~Ia~rsrGtPRiAn 219 (233)
T PF05496_consen 203 AAEEIARRSRGTPRIAN 219 (233)
T ss_dssp HHHHHHHCTTTSHHHHH
T ss_pred HHHHHHHhcCCChHHHH
Confidence 89999999999995433
No 144
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=60.80 E-value=71 Score=39.29 Aligned_cols=102 Identities=13% Similarity=0.190 Sum_probs=63.3
Q ss_pred cEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEec-CChhhHhh-hCCCceEecCCCCHHHHHHHHHhcccCCCCCC
Q 046764 379 KKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTT-RNRDVAAI-MGSVRDYPLKESTKDDCLQVFTQHCLGMRDFS 456 (1113)
Q Consensus 379 kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTT-R~~~va~~-~~~~~~~~l~~L~~~~s~~LF~~~af~~~~~~ 456 (1113)
++-++|+|++...+...++.+...+........+|++| ....+... ......+++.+++.++....+...+-..+ ..
T Consensus 119 ~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~keg-i~ 197 (605)
T PRK05896 119 KYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEK-IK 197 (605)
T ss_pred CcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcC-CC
Confidence 34469999998776567777777665443455555444 44444322 12236899999999998877776542222 11
Q ss_pred CchhHHHHHHHHHHHhCCCh-HHHHHHHh
Q 046764 457 MQQSLKDISKKIVIRCNGLP-LAAKTLAG 484 (1113)
Q Consensus 457 ~~~~l~~i~~~I~~~c~GlP-LAi~~ig~ 484 (1113)
.. .+.+..+++.++|-+ .|+..+-.
T Consensus 198 Is---~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 198 IE---DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred CC---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 11 245678899999965 45555444
No 145
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=59.32 E-value=0.63 Score=48.51 Aligned_cols=79 Identities=18% Similarity=0.095 Sum_probs=64.8
Q ss_pred CCCCCccccEEecCCCCCcccChhhhccccccEEecccccccccccccccCCCcceEEEcCCceecccccccccccc-cc
Q 046764 604 HGGDLKHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNFDFCCWKDIDSALQELK-LL 682 (1113)
Q Consensus 604 ~i~~L~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~~~~i~~~~~~~l~~L~-L~ 682 (1113)
.+...+..++||++.|++..+-..++.++.|..||++. +.+..+|.+++++..++++++..|.. ...|.+.+.++ +.
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~n~~-~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHKNNH-SQQPKSQKKEPHPK 114 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhccch-hhCCccccccCCcc
Confidence 55677889999999999999988899999999999998 68899999999999999999887754 34566666655 44
Q ss_pred cc
Q 046764 683 HL 684 (1113)
Q Consensus 683 ~L 684 (1113)
++
T Consensus 115 ~~ 116 (326)
T KOG0473|consen 115 KN 116 (326)
T ss_pred hh
Confidence 33
No 146
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=58.44 E-value=93 Score=38.62 Aligned_cols=100 Identities=12% Similarity=0.172 Sum_probs=64.2
Q ss_pred CcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEE-ecCChhhHhh-hCCCceEecCCCCHHHHHHHHHhcccCCCCC
Q 046764 378 GKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIV-TTRNRDVAAI-MGSVRDYPLKESTKDDCLQVFTQHCLGMRDF 455 (1113)
Q Consensus 378 ~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIiv-TTR~~~va~~-~~~~~~~~l~~L~~~~s~~LF~~~af~~~~~ 455 (1113)
++.-++|||+|...+...++.+...+..-....++|+ ||....+... ......+++++++.++-...+.+.+-. .+.
T Consensus 123 g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~-egi 201 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAA-ENV 201 (618)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHH-cCC
Confidence 4556889999988877778887777655444555554 4444444322 223368999999999988877766422 221
Q ss_pred CCchhHHHHHHHHHHHhCCChHHHHH
Q 046764 456 SMQQSLKDISKKIVIRCNGLPLAAKT 481 (1113)
Q Consensus 456 ~~~~~l~~i~~~I~~~c~GlPLAi~~ 481 (1113)
.. -.+....|++.++|-+--+..
T Consensus 202 ~i---e~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 202 PA---EPQALRLLARAARGSMRDALS 224 (618)
T ss_pred CC---CHHHHHHHHHHcCCCHHHHHH
Confidence 11 124567788899987744433
No 147
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=58.24 E-value=16 Score=43.15 Aligned_cols=93 Identities=12% Similarity=0.108 Sum_probs=53.2
Q ss_pred EEEEecCCCCChhh-h-hhhcccccCC-CCCcEEEEecCC-h--------hhHhhhCCCceEecCCCCHHHHHHHHHhcc
Q 046764 382 LLVLGDVWNENYSD-W-DSLSLPFEAG-APGSQIIVTTRN-R--------DVAAIMGSVRDYPLKESTKDDCLQVFTQHC 449 (1113)
Q Consensus 382 LiVLDDv~~~~~~~-w-~~l~~~l~~~-~~gSrIivTTR~-~--------~va~~~~~~~~~~l~~L~~~~s~~LF~~~a 449 (1113)
+|||||+......+ + +.+...+... ..|..||+|+.. . .+...+....++++++.+.++-..++.+.+
T Consensus 202 lLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~ 281 (405)
T TIGR00362 202 LLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKA 281 (405)
T ss_pred EEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHH
Confidence 78899997542111 1 1122222111 234567777763 1 233334444579999999999999998886
Q ss_pred cCCCCCCCchhHHHHHHHHHHHhCCChHH
Q 046764 450 LGMRDFSMQQSLKDISKKIVIRCNGLPLA 478 (1113)
Q Consensus 450 f~~~~~~~~~~l~~i~~~I~~~c~GlPLA 478 (1113)
-..+ ...+ +++..-|++.+.|-.-.
T Consensus 282 ~~~~-~~l~---~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 282 EEEG-LELP---DEVLEFIAKNIRSNVRE 306 (405)
T ss_pred HHcC-CCCC---HHHHHHHHHhcCCCHHH
Confidence 4322 1111 35667777777775543
No 148
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=57.09 E-value=14 Score=35.34 Aligned_cols=54 Identities=11% Similarity=0.145 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHhcCcE-EEEEEecCCCC-ChhhhhhhcccccCCCCCcEEEEecCC
Q 046764 363 DELGLLQEKLKNQMSGKK-FLLVLGDVWNE-NYSDWDSLSLPFEAGAPGSQIIVTTRN 418 (1113)
Q Consensus 363 ~~~~~l~~~l~~~L~~kr-~LiVLDDv~~~-~~~~w~~l~~~l~~~~~gSrIivTTR~ 418 (1113)
.+..++.+.+.+.+...+ .+||+|++..- +...++.+..... ..+.+||+..+.
T Consensus 70 ~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 70 QTSDELRSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp S-HHHHHHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 456667777777776554 59999999665 4444555544333 566777776654
No 149
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=56.77 E-value=81 Score=38.51 Aligned_cols=103 Identities=11% Similarity=0.116 Sum_probs=62.3
Q ss_pred cCcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEecCC-hhhHhhh-CCCceEecCCCCHHHHHHHHHhcccCCCC
Q 046764 377 SGKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTTRN-RDVAAIM-GSVRDYPLKESTKDDCLQVFTQHCLGMRD 454 (1113)
Q Consensus 377 ~~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTTR~-~~va~~~-~~~~~~~l~~L~~~~s~~LF~~~af~~~~ 454 (1113)
.+++-++|+|++...+....+.+...+..-...+.+|.+|.+ ..+.... .....+++++++.++-.....+.+-. ++
T Consensus 117 ~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~-eg 195 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQ-EN 195 (527)
T ss_pred cCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHH-cC
Confidence 456778999999877655666666666554445555555543 3332211 11257999999999888777665422 11
Q ss_pred CCCchhHHHHHHHHHHHhCCChH-HHHHHH
Q 046764 455 FSMQQSLKDISKKIVIRCNGLPL-AAKTLA 483 (1113)
Q Consensus 455 ~~~~~~l~~i~~~I~~~c~GlPL-Ai~~ig 483 (1113)
.. .-.+....|++.++|.+- |+..+-
T Consensus 196 i~---~~~~al~~la~~s~Gslr~al~lld 222 (527)
T PRK14969 196 IP---FDATALQLLARAAAGSMRDALSLLD 222 (527)
T ss_pred CC---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 11 112455778889999774 444443
No 150
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=56.49 E-value=7 Score=26.13 Aligned_cols=17 Identities=35% Similarity=0.698 Sum_probs=12.9
Q ss_pred cccEEecCCCCCcccCh
Q 046764 610 HLRHLDLSETDIQILPE 626 (1113)
Q Consensus 610 ~Lr~L~Ls~~~i~~LP~ 626 (1113)
+|++|++++|++++||+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 57777888887777775
No 151
>COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=55.91 E-value=25 Score=45.15 Aligned_cols=99 Identities=14% Similarity=0.217 Sum_probs=53.7
Q ss_pred CcEEEEEEecCCCCCh------hhhhhhcccccCCCCCcEEEEecCChhhHhhhCC---CceEecCCCCHHHHHHHHHhc
Q 046764 378 GKKFLLVLGDVWNENY------SDWDSLSLPFEAGAPGSQIIVTTRNRDVAAIMGS---VRDYPLKESTKDDCLQVFTQH 448 (1113)
Q Consensus 378 ~kr~LiVLDDv~~~~~------~~w~~l~~~l~~~~~gSrIivTTR~~~va~~~~~---~~~~~l~~L~~~~s~~LF~~~ 448 (1113)
.+|-||+||.+-..+. -.|..+. .+.. ..+++.+..|...+.+..... ..-|++......+- -.|.+.
T Consensus 685 T~~SLvilDEiGRGTsT~DGlaIA~Av~e-yL~~-~~~~~tLFATHy~ELt~l~~~~~~v~N~h~~~~e~~~~-i~Fl~k 761 (843)
T COG0249 685 TERSLVILDEIGRGTSTYDGLAIAWAVLE-YLHE-KIGCRTLFATHYHELTELEEKLPQVKNYHMSAVEEGGD-ITFLYK 761 (843)
T ss_pred CCCcEEEEecccCCCCcchhHHHHHHHHH-HHHh-ccCceEEEeccHHHHHHhhhcccccceeEEEEEEcCCc-eEEEEE
Confidence 4555999999966531 1233222 2222 269999999999887765433 12233332211111 223333
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHhCCChHHHHHHHhhh
Q 046764 449 CLGMRDFSMQQSLKDISKKIVIRCNGLPLAAKTLAGLL 486 (1113)
Q Consensus 449 af~~~~~~~~~~l~~i~~~I~~~c~GlPLAi~~ig~~L 486 (1113)
+- ..+.-...|-.+++.+ |+|-.++--|...
T Consensus 762 v~------~G~a~~SyGi~VAkla-GlP~~Vi~rA~~i 792 (843)
T COG0249 762 VK------PGIADKSYGIHVAKLA-GLPEEVIERAREI 792 (843)
T ss_pred ec------cCCCCccHHHHHHHHh-CCCHHHHHHHHHH
Confidence 21 1122335677777766 6898888766543
No 152
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=55.67 E-value=95 Score=39.13 Aligned_cols=102 Identities=16% Similarity=0.144 Sum_probs=64.0
Q ss_pred CcEEEEEEecCCCCChhhhhhhcccccCCCCCcE-EEEecCChhhHhh-hCCCceEecCCCCHHHHHHHHHhcccCCCCC
Q 046764 378 GKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQ-IIVTTRNRDVAAI-MGSVRDYPLKESTKDDCLQVFTQHCLGMRDF 455 (1113)
Q Consensus 378 ~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSr-IivTTR~~~va~~-~~~~~~~~l~~L~~~~s~~LF~~~af~~~~~ 455 (1113)
+++-++|+|++...+...+..+...+........ |++||+...+... .....++++++++.++-...+...+-..+ .
T Consensus 117 g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~keg-I 195 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKEN-I 195 (725)
T ss_pred CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcC-C
Confidence 5666889999987766677777766654333444 4455555555433 22236899999999998877766542221 1
Q ss_pred CCchhHHHHHHHHHHHhCCCh-HHHHHHH
Q 046764 456 SMQQSLKDISKKIVIRCNGLP-LAAKTLA 483 (1113)
Q Consensus 456 ~~~~~l~~i~~~I~~~c~GlP-LAi~~ig 483 (1113)
.. -.+.+..|++.++|-+ .|+..+.
T Consensus 196 ~i---d~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 196 SY---EKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred CC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 11 1245678899998866 4444443
No 153
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=54.97 E-value=76 Score=40.88 Aligned_cols=100 Identities=10% Similarity=0.153 Sum_probs=64.4
Q ss_pred cCcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEE-ecCChhhHhhh-CCCceEecCCCCHHHHHHHHHhcccCCCC
Q 046764 377 SGKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIV-TTRNRDVAAIM-GSVRDYPLKESTKDDCLQVFTQHCLGMRD 454 (1113)
Q Consensus 377 ~~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIiv-TTR~~~va~~~-~~~~~~~l~~L~~~~s~~LF~~~af~~~~ 454 (1113)
.+++-++|||++...+...++.|...+..-...+.+|+ ||....+...+ ...++|+++.++.++-...+.+.+ ..++
T Consensus 118 ~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il-~~EG 196 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERIC-AQEG 196 (824)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHH-HHcC
Confidence 45556788999988877778888777765444555554 44444454432 233689999999998877776643 2222
Q ss_pred CCCchhHHHHHHHHHHHhCCChHHHH
Q 046764 455 FSMQQSLKDISKKIVIRCNGLPLAAK 480 (1113)
Q Consensus 455 ~~~~~~l~~i~~~I~~~c~GlPLAi~ 480 (1113)
... -.+....|++.++|-+..+.
T Consensus 197 v~i---d~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 197 VPV---EPGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred CCC---CHHHHHHHHHHcCCCHHHHH
Confidence 111 12445678899999774443
No 154
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=54.96 E-value=97 Score=37.05 Aligned_cols=102 Identities=10% Similarity=0.107 Sum_probs=61.9
Q ss_pred CcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEec-CChhhHhhh-CCCceEecCCCCHHHHHHHHHhcccCCCCC
Q 046764 378 GKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTT-RNRDVAAIM-GSVRDYPLKESTKDDCLQVFTQHCLGMRDF 455 (1113)
Q Consensus 378 ~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTT-R~~~va~~~-~~~~~~~l~~L~~~~s~~LF~~~af~~~~~ 455 (1113)
+++-+||+|++...+....+.+...+........+|++| +.+.+.... .....++++++++++-.....+.+-..+ .
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg-~ 198 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEG-I 198 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcC-C
Confidence 566788999997665455666666655444455666555 333333221 2235799999999998777766542211 1
Q ss_pred CCchhHHHHHHHHHHHhCCCh-HHHHHHH
Q 046764 456 SMQQSLKDISKKIVIRCNGLP-LAAKTLA 483 (1113)
Q Consensus 456 ~~~~~l~~i~~~I~~~c~GlP-LAi~~ig 483 (1113)
.. -.+.+..|++.++|-+ .|+..+-
T Consensus 199 ~i---~~~al~~L~~~s~gdlr~a~~~Le 224 (451)
T PRK06305 199 ET---SREALLPIARAAQGSLRDAESLYD 224 (451)
T ss_pred CC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 11 1356778899999865 4544443
No 155
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=54.82 E-value=1.6e+02 Score=33.29 Aligned_cols=93 Identities=15% Similarity=0.189 Sum_probs=63.1
Q ss_pred CcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEecCC-hhhHhhh-CCCceEecCCCCHHHHHHHHHhcccCCCCC
Q 046764 378 GKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTTRN-RDVAAIM-GSVRDYPLKESTKDDCLQVFTQHCLGMRDF 455 (1113)
Q Consensus 378 ~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTTR~-~~va~~~-~~~~~~~l~~L~~~~s~~LF~~~af~~~~~ 455 (1113)
+++-.+|+|++...+......+...+..-.+++.+|.+|.+ ..+.... .-...+.+.+++.++..+.+...- .
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~---~-- 181 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG---I-- 181 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC---C--
Confidence 44557889999888777777777766554456666666554 4444333 233689999999999988776531 1
Q ss_pred CCchhHHHHHHHHHHHhCCChHHHHHH
Q 046764 456 SMQQSLKDISKKIVIRCNGLPLAAKTL 482 (1113)
Q Consensus 456 ~~~~~l~~i~~~I~~~c~GlPLAi~~i 482 (1113)
+ .+..+++.++|-|+.+..+
T Consensus 182 ---~----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 182 ---T----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred ---c----hHHHHHHHcCCCHHHHHHH
Confidence 1 1346788999999866554
No 156
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=54.73 E-value=44 Score=38.96 Aligned_cols=70 Identities=11% Similarity=0.066 Sum_probs=46.2
Q ss_pred EEEEEEecCCCCCh-hhhh----hhcccccCCCCCcEEEEecCC---------hhhHhhhCCCceEecCCCCHHHHHHHH
Q 046764 380 KFLLVLGDVWNENY-SDWD----SLSLPFEAGAPGSQIIVTTRN---------RDVAAIMGSVRDYPLKESTKDDCLQVF 445 (1113)
Q Consensus 380 r~LiVLDDv~~~~~-~~w~----~l~~~l~~~~~gSrIivTTR~---------~~va~~~~~~~~~~l~~L~~~~s~~LF 445 (1113)
-=++++||++-... +.|+ ++-..+.. .|-.||+|++. .++..++...-++++++++.+......
T Consensus 176 ~dlllIDDiq~l~gk~~~qeefFh~FN~l~~--~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL 253 (408)
T COG0593 176 LDLLLIDDIQFLAGKERTQEEFFHTFNALLE--NGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAIL 253 (408)
T ss_pred cCeeeechHhHhcCChhHHHHHHHHHHHHHh--cCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHH
Confidence 33889999966311 1222 22222322 34489999863 456666777789999999999999988
Q ss_pred HhcccC
Q 046764 446 TQHCLG 451 (1113)
Q Consensus 446 ~~~af~ 451 (1113)
.+++..
T Consensus 254 ~kka~~ 259 (408)
T COG0593 254 RKKAED 259 (408)
T ss_pred HHHHHh
Confidence 886533
No 157
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=53.96 E-value=1.1e+02 Score=38.29 Aligned_cols=99 Identities=11% Similarity=0.129 Sum_probs=63.7
Q ss_pred cCcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEE-ecCChhhHhhh-CCCceEecCCCCHHHHHHHHHhcccCCCC
Q 046764 377 SGKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIV-TTRNRDVAAIM-GSVRDYPLKESTKDDCLQVFTQHCLGMRD 454 (1113)
Q Consensus 377 ~~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIiv-TTR~~~va~~~-~~~~~~~l~~L~~~~s~~LF~~~af~~~~ 454 (1113)
.+++-++|+|++...+...++.+...+..-..++.+|+ ||+...+.... ....+++.++++.++....+.+.+-..+
T Consensus 119 ~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~eg- 197 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEG- 197 (614)
T ss_pred cCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcC-
Confidence 34556789999987766677777777665444566554 54545554432 2336899999999998887776543222
Q ss_pred CCCchhHHHHHHHHHHHhCCChHHH
Q 046764 455 FSMQQSLKDISKKIVIRCNGLPLAA 479 (1113)
Q Consensus 455 ~~~~~~l~~i~~~I~~~c~GlPLAi 479 (1113)
... -.+.+..|++.++|-.--+
T Consensus 198 i~i---~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 198 ITA---EPEALNVIAQKADGGMRDA 219 (614)
T ss_pred CCC---CHHHHHHHHHHcCCCHHHH
Confidence 111 1245678889999866433
No 158
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=53.88 E-value=17 Score=34.54 Aligned_cols=53 Identities=9% Similarity=0.072 Sum_probs=28.6
Q ss_pred EEEEeccc----chhhhc----------ccccCC--cCCCCCHHHHHHHHHHHhcCc-EEEEEEecCCCC
Q 046764 339 LSLSIMMP----NIIRFI----------ATADQP--VNGTDELGLLQEKLKNQMSGK-KFLLVLGDVWNE 391 (1113)
Q Consensus 339 i~I~G~gG----tLA~~v----------i~~~~~--~~~~~~~~~l~~~l~~~L~~k-r~LiVLDDv~~~ 391 (1113)
|-|+|..| |+|+.+ +..... .........+...+.+.-+.. +.+|++||+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l 70 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKL 70 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGT
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhc
Confidence 45788887 777777 111110 011222333444444433333 799999999665
No 159
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=53.24 E-value=68 Score=40.98 Aligned_cols=106 Identities=7% Similarity=0.060 Sum_probs=55.6
Q ss_pred EEEEEEecCCCCChhhhhhhcccccC-CCCCcEEEE--ecCC--------hhhHhhhCCCceEecCCCCHHHHHHHHHhc
Q 046764 380 KFLLVLGDVWNENYSDWDSLSLPFEA-GAPGSQIIV--TTRN--------RDVAAIMGSVRDYPLKESTKDDCLQVFTQH 448 (1113)
Q Consensus 380 r~LiVLDDv~~~~~~~w~~l~~~l~~-~~~gSrIiv--TTR~--------~~va~~~~~~~~~~l~~L~~~~s~~LF~~~ 448 (1113)
..+||||+|+.-....=+.+...+.+ ...+++|+| +|.. ..+...++. ..+..+|.+.++-..++..+
T Consensus 870 v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~-eeIvF~PYTaEQL~dILk~R 948 (1164)
T PTZ00112 870 VSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAF-GRLVFSPYKGDEIEKIIKER 948 (1164)
T ss_pred ceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhcchhhhhhhhhcccc-ccccCCCCCHHHHHHHHHHH
Confidence 35899999965421111122222211 134566655 3322 222222322 24666999999999999988
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHhCCChHHHHHHHhhh
Q 046764 449 CLGMRDFSMQQSLKDISKKIVIRCNGLPLAAKTLAGLL 486 (1113)
Q Consensus 449 af~~~~~~~~~~l~~i~~~I~~~c~GlPLAi~~ig~~L 486 (1113)
+-.......+..++-+|+.++..-|-.-.||.++-.+.
T Consensus 949 Ae~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 949 LENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred HHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 74322222233345555555544455566776655444
No 160
>COG3899 Predicted ATPase [General function prediction only]
Probab=53.06 E-value=44 Score=43.33 Aligned_cols=109 Identities=14% Similarity=0.182 Sum_probs=67.3
Q ss_pred cCcEEEEEEecCCCCChhhhhhhcccccCCC----CCcEE--EEecCCh--hhHhhhCCCceEecCCCCHHHHHHHHHhc
Q 046764 377 SGKKFLLVLGDVWNENYSDWDSLSLPFEAGA----PGSQI--IVTTRNR--DVAAIMGSVRDYPLKESTKDDCLQVFTQH 448 (1113)
Q Consensus 377 ~~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~----~gSrI--ivTTR~~--~va~~~~~~~~~~l~~L~~~~s~~LF~~~ 448 (1113)
+.|...||+||+...+....+-|......-. .-..| +.|.+.. .+-..-.....+.+.||+..+.-.+....
T Consensus 152 ~~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~ 231 (849)
T COG3899 152 EEHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAAT 231 (849)
T ss_pred ccCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHH
Confidence 3459999999995554444443332221111 01123 2233322 12121223368999999999999998887
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHhCCChHHHHHHHhhhcCCC
Q 046764 449 CLGMRDFSMQQSLKDISKKIVIRCNGLPLAAKTLAGLLRGKN 490 (1113)
Q Consensus 449 af~~~~~~~~~~l~~i~~~I~~~c~GlPLAi~~ig~~L~~~~ 490 (1113)
. +... ....+....|++|..|.|+-+.-+-..+....
T Consensus 232 l-~~~~----~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~ 268 (849)
T COG3899 232 L-GCTK----LLPAPLLELIFEKTKGNPFFIEEFLKALYEEG 268 (849)
T ss_pred h-CCcc----cccchHHHHHHHHhcCCCccHHHHHHHHHhCC
Confidence 4 3321 22346788999999999999988888777654
No 161
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=52.15 E-value=83 Score=35.04 Aligned_cols=70 Identities=7% Similarity=0.065 Sum_probs=42.3
Q ss_pred EEEEEEecCCCC---------ChhhhhhhcccccCCCCCcEEEEecCChhhHhhh--------CCCceEecCCCCHHHHH
Q 046764 380 KFLLVLGDVWNE---------NYSDWDSLSLPFEAGAPGSQIIVTTRNRDVAAIM--------GSVRDYPLKESTKDDCL 442 (1113)
Q Consensus 380 r~LiVLDDv~~~---------~~~~w~~l~~~l~~~~~gSrIivTTR~~~va~~~--------~~~~~~~l~~L~~~~s~ 442 (1113)
.-+|+||++... ..+.++.+...+.....+-+||+++.....-... .....+++++++.+|-.
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~ 201 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELL 201 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHH
Confidence 358889999632 0122344444444444566777776543222111 11357899999999999
Q ss_pred HHHHhcc
Q 046764 443 QVFTQHC 449 (1113)
Q Consensus 443 ~LF~~~a 449 (1113)
.++...+
T Consensus 202 ~I~~~~l 208 (284)
T TIGR02880 202 VIAGLML 208 (284)
T ss_pred HHHHHHH
Confidence 8888775
No 162
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=51.90 E-value=43 Score=39.18 Aligned_cols=44 Identities=16% Similarity=0.151 Sum_probs=30.1
Q ss_pred CCcEEEEecCChhhHhh-h----CCCceEecCCCCHHHHHHHHHhcccC
Q 046764 408 PGSQIIVTTRNRDVAAI-M----GSVRDYPLKESTKDDCLQVFTQHCLG 451 (1113)
Q Consensus 408 ~gSrIivTTR~~~va~~-~----~~~~~~~l~~L~~~~s~~LF~~~af~ 451 (1113)
.+.+||.||...+.... . ..+..+++.+.+.++-.++|..++.+
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~ 317 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRK 317 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhcc
Confidence 35678888876443221 1 12457999999999999999887643
No 163
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=51.67 E-value=58 Score=36.76 Aligned_cols=111 Identities=13% Similarity=0.167 Sum_probs=56.5
Q ss_pred eEEEEEEeccc----chhhhcccccC-C---c-CCCCCHHHHHHHHHHHh-----cCcEEEEEEecCCCC-Chhhhhhhc
Q 046764 336 LHLLSLSIMMP----NIIRFIATADQ-P---V-NGTDELGLLQEKLKNQM-----SGKKFLLVLGDVWNE-NYSDWDSLS 400 (1113)
Q Consensus 336 ~~vi~I~G~gG----tLA~~vi~~~~-~---~-~~~~~~~~l~~~l~~~L-----~~kr~LiVLDDv~~~-~~~~w~~l~ 400 (1113)
..++-++|..| |+|+.+..... + . ......+.+.+.+.+.. .+.+-+||+||+... ..+..+.+.
T Consensus 43 ~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~~~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~ 122 (316)
T PHA02544 43 PNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSDCRIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLR 122 (316)
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCcccHHHHHHHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHH
Confidence 35667789988 77777721110 0 0 01112333333333322 234557889999755 222233343
Q ss_pred ccccCCCCCcEEEEecCChh-hHhhh-CCCceEecCCCCHHHHHHHHH
Q 046764 401 LPFEAGAPGSQIIVTTRNRD-VAAIM-GSVRDYPLKESTKDDCLQVFT 446 (1113)
Q Consensus 401 ~~l~~~~~gSrIivTTR~~~-va~~~-~~~~~~~l~~L~~~~s~~LF~ 446 (1113)
..+.....++++|+||...+ +.... ....++.++..+.++...++.
T Consensus 123 ~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~ 170 (316)
T PHA02544 123 SFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMK 170 (316)
T ss_pred HHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHH
Confidence 33433345778888886533 11111 111467777777777665544
No 164
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=51.22 E-value=96 Score=37.68 Aligned_cols=101 Identities=10% Similarity=0.097 Sum_probs=60.7
Q ss_pred cCcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEecC-ChhhHhhh-CCCceEecCCCCHHHHHHHHHhcccCCCC
Q 046764 377 SGKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTTR-NRDVAAIM-GSVRDYPLKESTKDDCLQVFTQHCLGMRD 454 (1113)
Q Consensus 377 ~~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTTR-~~~va~~~-~~~~~~~l~~L~~~~s~~LF~~~af~~~~ 454 (1113)
.++.-++|+|++...+....+.+...+..-...+++|.+|. ...+.... .....+++++++.++-.....+.+-. ++
T Consensus 117 ~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~-eg 195 (509)
T PRK14958 117 KGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKE-EN 195 (509)
T ss_pred cCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHH-cC
Confidence 35666899999988766677777766655444566665544 33333221 12257899999998866655444321 22
Q ss_pred CCCchhHHHHHHHHHHHhCCChHHHHH
Q 046764 455 FSMQQSLKDISKKIVIRCNGLPLAAKT 481 (1113)
Q Consensus 455 ~~~~~~l~~i~~~I~~~c~GlPLAi~~ 481 (1113)
... -.+....|++.++|-+--+..
T Consensus 196 i~~---~~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 196 VEF---ENAALDLLARAANGSVRDALS 219 (509)
T ss_pred CCC---CHHHHHHHHHHcCCcHHHHHH
Confidence 111 123456788889998754443
No 165
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=50.58 E-value=1.2e+02 Score=38.35 Aligned_cols=49 Identities=18% Similarity=0.378 Sum_probs=35.4
Q ss_pred HHHHHHhcCcEE-EEEEecCCCCChhhhhhhcccccCC----CCC-------cEEEEecCC
Q 046764 370 EKLKNQMSGKKF-LLVLGDVWNENYSDWDSLSLPFEAG----APG-------SQIIVTTRN 418 (1113)
Q Consensus 370 ~~l~~~L~~kr~-LiVLDDv~~~~~~~w~~l~~~l~~~----~~g-------SrIivTTR~ 418 (1113)
..+-+.++.|.| .|.||.|...+++..+.+...+.++ +.| +-||+||..
T Consensus 583 G~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~ 643 (786)
T COG0542 583 GQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNA 643 (786)
T ss_pred cchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEeccc
Confidence 346667778878 7889999998888888877777654 233 557777764
No 166
>CHL00181 cbbX CbbX; Provisional
Probab=50.26 E-value=1.1e+02 Score=34.25 Aligned_cols=69 Identities=10% Similarity=0.076 Sum_probs=41.1
Q ss_pred EEEEEecCCCC---------ChhhhhhhcccccCCCCCcEEEEecCChhhHhhh--------CCCceEecCCCCHHHHHH
Q 046764 381 FLLVLGDVWNE---------NYSDWDSLSLPFEAGAPGSQIIVTTRNRDVAAIM--------GSVRDYPLKESTKDDCLQ 443 (1113)
Q Consensus 381 ~LiVLDDv~~~---------~~~~w~~l~~~l~~~~~gSrIivTTR~~~va~~~--------~~~~~~~l~~L~~~~s~~ 443 (1113)
-.|++|++... ..+.-+.+.....+...+.+||.++....+.... .....++.++++.++-.+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 48899999642 0122233333344444556777777644432211 123578999999999888
Q ss_pred HHHhcc
Q 046764 444 VFTQHC 449 (1113)
Q Consensus 444 LF~~~a 449 (1113)
++...+
T Consensus 204 I~~~~l 209 (287)
T CHL00181 204 IAKIML 209 (287)
T ss_pred HHHHHH
Confidence 887775
No 167
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=49.46 E-value=12 Score=25.03 Aligned_cols=17 Identities=41% Similarity=0.665 Sum_probs=11.0
Q ss_pred CccccEEecCCCCCccc
Q 046764 608 LKHLRHLDLSETDIQIL 624 (1113)
Q Consensus 608 L~~Lr~L~Ls~~~i~~L 624 (1113)
+++|+.|+|++|.|+.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 35677777777766543
No 168
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=49.27 E-value=40 Score=40.36 Aligned_cols=94 Identities=10% Similarity=0.103 Sum_probs=54.2
Q ss_pred EEEEEecCCCCChhh-h-hhhcccccC-CCCCcEEEEecCCh---------hhHhhhCCCceEecCCCCHHHHHHHHHhc
Q 046764 381 FLLVLGDVWNENYSD-W-DSLSLPFEA-GAPGSQIIVTTRNR---------DVAAIMGSVRDYPLKESTKDDCLQVFTQH 448 (1113)
Q Consensus 381 ~LiVLDDv~~~~~~~-w-~~l~~~l~~-~~~gSrIivTTR~~---------~va~~~~~~~~~~l~~L~~~~s~~LF~~~ 448 (1113)
-+|||||+......+ + +.+...+.. ...|..||+|+... .+...+....++++++.+.++-..++.+.
T Consensus 213 dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~ 292 (450)
T PRK00149 213 DVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKK 292 (450)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHH
Confidence 388999996532111 1 122221111 12345577777642 23444555568999999999999999988
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHhCCChHH
Q 046764 449 CLGMRDFSMQQSLKDISKKIVIRCNGLPLA 478 (1113)
Q Consensus 449 af~~~~~~~~~~l~~i~~~I~~~c~GlPLA 478 (1113)
+-..+ ...+ +++..-|++.+.|-.-.
T Consensus 293 ~~~~~-~~l~---~e~l~~ia~~~~~~~R~ 318 (450)
T PRK00149 293 AEEEG-IDLP---DEVLEFIAKNITSNVRE 318 (450)
T ss_pred HHHcC-CCCC---HHHHHHHHcCcCCCHHH
Confidence 74322 1111 35566777777765543
No 169
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=49.14 E-value=25 Score=37.43 Aligned_cols=104 Identities=13% Similarity=0.094 Sum_probs=58.2
Q ss_pred HHHhcCcEEEEEEecCCCCChh-hhhhh-cccccC-CCCCcEEEEecCC---------hhhHhhhCCCceEecCCCCHHH
Q 046764 373 KNQMSGKKFLLVLGDVWNENYS-DWDSL-SLPFEA-GAPGSQIIVTTRN---------RDVAAIMGSVRDYPLKESTKDD 440 (1113)
Q Consensus 373 ~~~L~~kr~LiVLDDv~~~~~~-~w~~l-~~~l~~-~~~gSrIivTTR~---------~~va~~~~~~~~~~l~~L~~~~ 440 (1113)
++.+++- =++++||+...... .|... ...+.. ...|-+||+|++. +++..++...-++++++++.++
T Consensus 92 ~~~~~~~-DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~ 170 (219)
T PF00308_consen 92 KDRLRSA-DLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDED 170 (219)
T ss_dssp HHHHCTS-SEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHH
T ss_pred hhhhhcC-CEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHH
Confidence 3444433 36789999664322 23321 111111 1346689999964 2344555566789999999999
Q ss_pred HHHHHHhcccCCCCCCCchhHHHHHHHHHHHhCCChHHHHH
Q 046764 441 CLQVFTQHCLGMRDFSMQQSLKDISKKIVIRCNGLPLAAKT 481 (1113)
Q Consensus 441 s~~LF~~~af~~~~~~~~~~l~~i~~~I~~~c~GlPLAi~~ 481 (1113)
-..++.++|-..+- .. -++++.-|++.+.+-.-.+..
T Consensus 171 r~~il~~~a~~~~~-~l---~~~v~~~l~~~~~~~~r~L~~ 207 (219)
T PF00308_consen 171 RRRILQKKAKERGI-EL---PEEVIEYLARRFRRDVRELEG 207 (219)
T ss_dssp HHHHHHHHHHHTT---S----HHHHHHHHHHTTSSHHHHHH
T ss_pred HHHHHHHHHHHhCC-CC---cHHHHHHHHHhhcCCHHHHHH
Confidence 99999988743221 11 246677778887766555443
No 170
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=49.05 E-value=1e+02 Score=38.18 Aligned_cols=101 Identities=14% Similarity=0.168 Sum_probs=64.5
Q ss_pred CcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEE-ecCChhhHhhh-CCCceEecCCCCHHHHHHHHHhcccCCCCC
Q 046764 378 GKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIV-TTRNRDVAAIM-GSVRDYPLKESTKDDCLQVFTQHCLGMRDF 455 (1113)
Q Consensus 378 ~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIiv-TTR~~~va~~~-~~~~~~~l~~L~~~~s~~LF~~~af~~~~~ 455 (1113)
+++-++|+|++...+....+.+...+..-...+++|+ ||....+.... .....+++++++.++....+.+.+-..+ .
T Consensus 131 a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~keg-i 209 (598)
T PRK09111 131 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEG-V 209 (598)
T ss_pred CCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcC-C
Confidence 4555789999977765567777766655444566654 54544444332 2236899999999998888877653222 1
Q ss_pred CCchhHHHHHHHHHHHhCCChHHHHHH
Q 046764 456 SMQQSLKDISKKIVIRCNGLPLAAKTL 482 (1113)
Q Consensus 456 ~~~~~l~~i~~~I~~~c~GlPLAi~~i 482 (1113)
.. -.+....|++.++|-+.-+...
T Consensus 210 ~i---~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 210 EV---EDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred CC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 11 1256778899999988655443
No 171
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.62 E-value=1.7e+02 Score=36.27 Aligned_cols=101 Identities=13% Similarity=0.165 Sum_probs=64.2
Q ss_pred CcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEecC-ChhhHhhh-CCCceEecCCCCHHHHHHHHHhcccCCCCC
Q 046764 378 GKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTTR-NRDVAAIM-GSVRDYPLKESTKDDCLQVFTQHCLGMRDF 455 (1113)
Q Consensus 378 ~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTTR-~~~va~~~-~~~~~~~l~~L~~~~s~~LF~~~af~~~~~ 455 (1113)
+++-+||+|++...+....+.+...+......+.+|++|. ...+.... .....+++++++.++....+.+.+-..+.
T Consensus 119 ~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl- 197 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI- 197 (585)
T ss_pred CCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC-
Confidence 5567899999976655567777666654444566665554 33443322 22357889999999888877776533221
Q ss_pred CCchhHHHHHHHHHHHhCCChHHHHHH
Q 046764 456 SMQQSLKDISKKIVIRCNGLPLAAKTL 482 (1113)
Q Consensus 456 ~~~~~l~~i~~~I~~~c~GlPLAi~~i 482 (1113)
.. -.+....|++.++|-+..+...
T Consensus 198 ~i---~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 198 NL---EPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred CC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 11 1356778899999988655443
No 172
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=48.43 E-value=98 Score=33.90 Aligned_cols=67 Identities=9% Similarity=0.134 Sum_probs=38.3
Q ss_pred EEEEEecCCCCC--------hhhhhhhcccccCCCCCcEEEEecCChhh----------HhhhCCCceEecCCCCHHHHH
Q 046764 381 FLLVLGDVWNEN--------YSDWDSLSLPFEAGAPGSQIIVTTRNRDV----------AAIMGSVRDYPLKESTKDDCL 442 (1113)
Q Consensus 381 ~LiVLDDv~~~~--------~~~w~~l~~~l~~~~~gSrIivTTR~~~v----------a~~~~~~~~~~l~~L~~~~s~ 442 (1113)
-+|++|++..-. .+..+.+..........-.+|+++...+. ...+ ...+++++++.++-.
T Consensus 107 ~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf--~~~i~f~~~~~~el~ 184 (261)
T TIGR02881 107 GVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRF--PISIDFPDYTVEELM 184 (261)
T ss_pred CEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhcc--ceEEEECCCCHHHHH
Confidence 488999996521 12233444444333333355556544332 2222 246888999999888
Q ss_pred HHHHhcc
Q 046764 443 QVFTQHC 449 (1113)
Q Consensus 443 ~LF~~~a 449 (1113)
+++.+.+
T Consensus 185 ~Il~~~~ 191 (261)
T TIGR02881 185 EIAERMV 191 (261)
T ss_pred HHHHHHH
Confidence 8888765
No 173
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=48.13 E-value=47 Score=31.47 Aligned_cols=58 Identities=10% Similarity=0.222 Sum_probs=23.9
Q ss_pred CCCCCccccEEecCCCCCcccC-hhhhccccccEEecccccccccccc-cccCCCcceEEEcC
Q 046764 604 HGGDLKHLRHLDLSETDIQILP-ESVNTLYNLRMLMLQKCNQLEKMCS-DMGNLLKLHHLDNF 664 (1113)
Q Consensus 604 ~i~~L~~Lr~L~Ls~~~i~~LP-~~i~~L~~L~~LdL~~c~~l~~LP~-~i~~L~~L~~L~L~ 664 (1113)
.|..+.+|+.+.+.++ +..++ ..+.++.+|+.+.+.. .+..++. .+....+|+.+++.
T Consensus 30 ~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 30 AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEEEET
T ss_pred hccccccccccccccc-ccccceeeeecccccccccccc--cccccccccccccccccccccC
Confidence 4555555555555543 44443 2445555555555543 2333332 23445555555543
No 174
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=47.96 E-value=1e+02 Score=36.78 Aligned_cols=129 Identities=14% Similarity=0.188 Sum_probs=78.4
Q ss_pred eEEEEEEeccc----chhhhc-----------ccccC--CcCCCCCHHHHHHHHHHHhcCcEEEEEEecCCCCChhhhhh
Q 046764 336 LHLLSLSIMMP----NIIRFI-----------ATADQ--PVNGTDELGLLQEKLKNQMSGKKFLLVLGDVWNENYSDWDS 398 (1113)
Q Consensus 336 ~~vi~I~G~gG----tLA~~v-----------i~~~~--~~~~~~~~~~l~~~l~~~L~~kr~LiVLDDv~~~~~~~w~~ 398 (1113)
+.-+-+.|..| +||.++ ++... ...+......+.....+.-+..--.||+||+... -+|-.
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErL--iD~vp 615 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERL--LDYVP 615 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhh--hcccc
Confidence 55566789888 888877 11111 0111222344555566666777789999999665 67766
Q ss_pred hcccc---------------cCCCCCcEEEEecCChhhHhhhCC----CceEecCCCCH-HHHHHHHHhc-ccCCCCCCC
Q 046764 399 LSLPF---------------EAGAPGSQIIVTTRNRDVAAIMGS----VRDYPLKESTK-DDCLQVFTQH-CLGMRDFSM 457 (1113)
Q Consensus 399 l~~~l---------------~~~~~gSrIivTTR~~~va~~~~~----~~~~~l~~L~~-~~s~~LF~~~-af~~~~~~~ 457 (1113)
|+..| |..++.--|+-||....|...|+. +..++|+-++. ++..+..+.. .|.
T Consensus 616 IGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~n~fs------ 689 (744)
T KOG0741|consen 616 IGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEELNIFS------ 689 (744)
T ss_pred cCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHccCCC------
Confidence 65432 222233346668888899998863 35789998887 6666665543 232
Q ss_pred chhHHHHHHHHHHHh
Q 046764 458 QQSLKDISKKIVIRC 472 (1113)
Q Consensus 458 ~~~l~~i~~~I~~~c 472 (1113)
+.....++.+...+|
T Consensus 690 d~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 690 DDEVRAIAEQLLSKK 704 (744)
T ss_pred cchhHHHHHHHhccc
Confidence 233455666666665
No 175
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=47.80 E-value=33 Score=36.94 Aligned_cols=83 Identities=19% Similarity=0.290 Sum_probs=47.5
Q ss_pred EEEEEEeccc----chhhhc-----------ccccCCcCCCCCHHHHHHHHHHHhcCcEEEEEEecCCCCC-hhhhhhhc
Q 046764 337 HLLSLSIMMP----NIIRFI-----------ATADQPVNGTDELGLLQEKLKNQMSGKKFLLVLGDVWNEN-YSDWDSLS 400 (1113)
Q Consensus 337 ~vi~I~G~gG----tLA~~v-----------i~~~~~~~~~~~~~~l~~~l~~~L~~kr~LiVLDDv~~~~-~~~w~~l~ 400 (1113)
.-+-+||..| ++++.+ |.... .+..++..+.+.++. +..||+|.+||+.-+. ......++
T Consensus 53 nnvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k--~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LK 128 (249)
T PF05673_consen 53 NNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSK--EDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALK 128 (249)
T ss_pred cceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECH--HHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHH
Confidence 3445688888 788887 22222 234566666666663 5679999999995432 23455555
Q ss_pred ccccCC---CC-CcEEEEecCChhhHh
Q 046764 401 LPFEAG---AP-GSQIIVTTRNRDVAA 423 (1113)
Q Consensus 401 ~~l~~~---~~-gSrIivTTR~~~va~ 423 (1113)
..+.-+ .+ .-.|.+||..++...
T Consensus 129 s~LeGgle~~P~NvliyATSNRRHLv~ 155 (249)
T PF05673_consen 129 SVLEGGLEARPDNVLIYATSNRRHLVP 155 (249)
T ss_pred HHhcCccccCCCcEEEEEecchhhccc
Confidence 444322 22 344555555555543
No 176
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=47.43 E-value=1.9e+02 Score=33.00 Aligned_cols=95 Identities=16% Similarity=0.090 Sum_probs=62.8
Q ss_pred cCcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEecCC-hhhHhhh-CCCceEecCCCCHHHHHHHHHhcccCCCC
Q 046764 377 SGKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTTRN-RDVAAIM-GSVRDYPLKESTKDDCLQVFTQHCLGMRD 454 (1113)
Q Consensus 377 ~~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTTR~-~~va~~~-~~~~~~~l~~L~~~~s~~LF~~~af~~~~ 454 (1113)
.+++-.+|+|++...+......+...+..-..++.+|.+|.+ ..+.... .-...+.+.+++.++......... + .
T Consensus 106 ~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~-~-~- 182 (334)
T PRK07993 106 LGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREV-T-M- 182 (334)
T ss_pred cCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHcc-C-C-
Confidence 356778999999888766777777666554456666666655 4454332 223578999999999887775432 1 1
Q ss_pred CCCchhHHHHHHHHHHHhCCChHHHH
Q 046764 455 FSMQQSLKDISKKIVIRCNGLPLAAK 480 (1113)
Q Consensus 455 ~~~~~~l~~i~~~I~~~c~GlPLAi~ 480 (1113)
. .+-+..+++.++|.|..+.
T Consensus 183 ---~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 183 ---S---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred ---C---HHHHHHHHHHcCCCHHHHH
Confidence 1 1236678899999996443
No 177
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=47.06 E-value=1.2e+02 Score=32.89 Aligned_cols=105 Identities=17% Similarity=0.153 Sum_probs=58.8
Q ss_pred cCcE-EEEEEecCCCCChhhhhhhcccccCCCCCc---EEEEecCChhhHh--------hhC-CCce-EecCCCCHHHHH
Q 046764 377 SGKK-FLLVLGDVWNENYSDWDSLSLPFEAGAPGS---QIIVTTRNRDVAA--------IMG-SVRD-YPLKESTKDDCL 442 (1113)
Q Consensus 377 ~~kr-~LiVLDDv~~~~~~~w~~l~~~l~~~~~gS---rIivTTR~~~va~--------~~~-~~~~-~~l~~L~~~~s~ 442 (1113)
++|| ..+++||..+...+..+.++....-...+| +|+..-. +.+.. ... ...+ |++.|++.++..
T Consensus 128 ~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gq-p~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~ 206 (269)
T COG3267 128 KGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQ-PKLRPRLRLPVLRELEQRIDIRIELPPLTEAETG 206 (269)
T ss_pred hCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCC-cccchhhchHHHHhhhheEEEEEecCCcChHHHH
Confidence 5788 899999997766566665543221111111 1222221 11111 111 1134 999999999877
Q ss_pred HHHHhcccCCCCCCCchhHHHHHHHHHHHhCCChHHHHHHH
Q 046764 443 QVFTQHCLGMRDFSMQQSLKDISKKIVIRCNGLPLAAKTLA 483 (1113)
Q Consensus 443 ~LF~~~af~~~~~~~~~~l~~i~~~I~~~c~GlPLAi~~ig 483 (1113)
.+...+.-+...+. +---.+....|.....|.|.+|.-++
T Consensus 207 ~yl~~~Le~a~~~~-~l~~~~a~~~i~~~sqg~P~lin~~~ 246 (269)
T COG3267 207 LYLRHRLEGAGLPE-PLFSDDALLLIHEASQGIPRLINNLA 246 (269)
T ss_pred HHHHHHHhccCCCc-ccCChhHHHHHHHHhccchHHHHHHH
Confidence 76666643332211 11123556778888999999987654
No 178
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=47.02 E-value=11 Score=24.97 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=10.0
Q ss_pred CCccEEEeecCCCCcc
Q 046764 950 SHLECLHILSCPSPTS 965 (1113)
Q Consensus 950 ~~L~~L~L~~c~~L~~ 965 (1113)
++|++|+|++|+.+++
T Consensus 2 ~~L~~L~l~~C~~itD 17 (26)
T smart00367 2 PNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCEeCCCCCCCcCH
Confidence 4566666666666554
No 179
>PLN03194 putative disease resistance protein; Provisional
Probab=44.79 E-value=13 Score=37.95 Aligned_cols=45 Identities=16% Similarity=0.341 Sum_probs=34.9
Q ss_pred HHHHHHHhchHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhhhhhhhh
Q 046764 237 MMGTLIEVNPAVINAVIDDAEEKQKREQSVKMWLGELQNLAYDVDVLLD 285 (1113)
Q Consensus 237 ~~~~fl~~~l~~i~~~l~dae~~~~~~~~v~~W~~~lr~~ayd~ed~id 285 (1113)
.+|.||++++++++..-. .....+.++.|+++++++|.-++...+
T Consensus 112 ViPIFY~VdPsdVr~q~~----~~~~~e~v~~Wr~AL~~va~l~G~~~~ 156 (187)
T PLN03194 112 VIPIFCDVKPSQLRVVDN----GTCPDEEIRRFNWALEEAKYTVGLTFD 156 (187)
T ss_pred EEEEEecCCHHHhhcccc----CCCCHHHHHHHHHHHHHHhccccccCC
Confidence 578899999999997521 122457899999999999987776554
No 180
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=43.84 E-value=85 Score=35.54 Aligned_cols=110 Identities=18% Similarity=0.263 Sum_probs=66.0
Q ss_pred eEEEEEEeccc----chhhhcccccC-----------CcCCCCCHHHHHHHHHH--HhcCcEEEEEEecCCCCChhhhhh
Q 046764 336 LHLLSLSIMMP----NIIRFIATADQ-----------PVNGTDELGLLQEKLKN--QMSGKKFLLVLGDVWNENYSDWDS 398 (1113)
Q Consensus 336 ~~vi~I~G~gG----tLA~~vi~~~~-----------~~~~~~~~~~l~~~l~~--~L~~kr~LiVLDDv~~~~~~~w~~ 398 (1113)
+.-+.+||..| |||+.+..... ......+...+.+.-++ .+.++|..+.+|.|..-+..+-+.
T Consensus 162 ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~ 241 (554)
T KOG2028|consen 162 IPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDT 241 (554)
T ss_pred CCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhc
Confidence 55666899999 99999822111 00223344444443333 356788999999994432222222
Q ss_pred hcccccCCCCCcEEEE--ecCChhh---HhhhCCCceEecCCCCHHHHHHHHHhc
Q 046764 399 LSLPFEAGAPGSQIIV--TTRNRDV---AAIMGSVRDYPLKESTKDDCLQVFTQH 448 (1113)
Q Consensus 399 l~~~l~~~~~gSrIiv--TTR~~~v---a~~~~~~~~~~l~~L~~~~s~~LF~~~ 448 (1113)
.+|--.+|+-++| ||.+... +.......++-+++|..++-..++.+-
T Consensus 242 ---fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 242 ---FLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred ---ccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHH
Confidence 2344456776665 5655432 222334478999999999988887763
No 181
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.33 E-value=2e+02 Score=35.99 Aligned_cols=101 Identities=12% Similarity=0.171 Sum_probs=62.0
Q ss_pred CcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEE-ecCChhhHhhh-CCCceEecCCCCHHHHHHHHHhcccCCCCC
Q 046764 378 GKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIV-TTRNRDVAAIM-GSVRDYPLKESTKDDCLQVFTQHCLGMRDF 455 (1113)
Q Consensus 378 ~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIiv-TTR~~~va~~~-~~~~~~~l~~L~~~~s~~LF~~~af~~~~~ 455 (1113)
+++-++|+|++...+...++.+...+..-.....+|. |+....+.... .....++...++.++....+.+.+-..+.
T Consensus 120 ~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi- 198 (620)
T PRK14948 120 ARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESI- 198 (620)
T ss_pred CCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCC-
Confidence 5566889999987766677777776654334455554 44433333322 22357888899998887766665422111
Q ss_pred CCchhHHHHHHHHHHHhCCChHHHHHH
Q 046764 456 SMQQSLKDISKKIVIRCNGLPLAAKTL 482 (1113)
Q Consensus 456 ~~~~~l~~i~~~I~~~c~GlPLAi~~i 482 (1113)
... .+....|++.++|-+..+...
T Consensus 199 ~is---~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 199 EIE---PEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred CCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 111 245778889999977544443
No 182
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.21 E-value=1.8e+02 Score=35.08 Aligned_cols=102 Identities=13% Similarity=0.212 Sum_probs=61.4
Q ss_pred cCcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEec-CChhhHhhh-CCCceEecCCCCHHHHHHHHHhcccCCCC
Q 046764 377 SGKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTT-RNRDVAAIM-GSVRDYPLKESTKDDCLQVFTQHCLGMRD 454 (1113)
Q Consensus 377 ~~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTT-R~~~va~~~-~~~~~~~l~~L~~~~s~~LF~~~af~~~~ 454 (1113)
.+++-++|+|++...+....+.+...+........+|++| +...+.... .....+++.+++.++-...+.+.+-..+
T Consensus 117 ~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~eg- 195 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEK- 195 (486)
T ss_pred cCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcC-
Confidence 4567799999997765556666666655443445555444 443333221 2235799999999988777766542222
Q ss_pred CCCchhHHHHHHHHHHHhCCChHHHHHH
Q 046764 455 FSMQQSLKDISKKIVIRCNGLPLAAKTL 482 (1113)
Q Consensus 455 ~~~~~~l~~i~~~I~~~c~GlPLAi~~i 482 (1113)
... -.+....|++.++|.+-.+...
T Consensus 196 i~i---d~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 196 IEY---EEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred CCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 111 1245667888899976544443
No 183
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=40.78 E-value=49 Score=39.42 Aligned_cols=93 Identities=11% Similarity=0.053 Sum_probs=51.0
Q ss_pred cEEEEEEecCCCCC-hhhh-hhhcccccC-CCCCcEEEEecC-Chh--------hHhhhCCCceEecCCCCHHHHHHHHH
Q 046764 379 KKFLLVLGDVWNEN-YSDW-DSLSLPFEA-GAPGSQIIVTTR-NRD--------VAAIMGSVRDYPLKESTKDDCLQVFT 446 (1113)
Q Consensus 379 kr~LiVLDDv~~~~-~~~w-~~l~~~l~~-~~~gSrIivTTR-~~~--------va~~~~~~~~~~l~~L~~~~s~~LF~ 446 (1113)
+.-++++||+.... ...+ +.+...+.. ...|..||+||. ... +..++....++++++.+.+.-..++.
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~ 273 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIAR 273 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHH
Confidence 34589999996431 0111 112111111 123456888875 322 22233444688999999999999888
Q ss_pred hcccCCCCCCCchhHHHHHHHHHHHhCCC
Q 046764 447 QHCLGMRDFSMQQSLKDISKKIVIRCNGL 475 (1113)
Q Consensus 447 ~~af~~~~~~~~~~l~~i~~~I~~~c~Gl 475 (1113)
+.+-..+ ...+ .++..-|++.+.|-
T Consensus 274 ~~~~~~~-~~l~---~ev~~~Ia~~~~~~ 298 (440)
T PRK14088 274 KMLEIEH-GELP---EEVLNFVAENVDDN 298 (440)
T ss_pred HHHHhcC-CCCC---HHHHHHHHhccccC
Confidence 8763221 1111 35566666666654
No 184
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=40.45 E-value=2.3e+02 Score=34.90 Aligned_cols=101 Identities=16% Similarity=0.199 Sum_probs=63.9
Q ss_pred cCcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEec-CChhhHhhh-CCCceEecCCCCHHHHHHHHHhcccCCCC
Q 046764 377 SGKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTT-RNRDVAAIM-GSVRDYPLKESTKDDCLQVFTQHCLGMRD 454 (1113)
Q Consensus 377 ~~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTT-R~~~va~~~-~~~~~~~l~~L~~~~s~~LF~~~af~~~~ 454 (1113)
.+++-++|+|++...+...++.+...+..-.....+|.+| ....+-... .....++.++++.++-.....+.+...+-
T Consensus 117 ~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi 196 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI 196 (563)
T ss_pred cCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 4566688999998776667777777766544455555555 434443322 22357899999999887777766533221
Q ss_pred CCCchhHHHHHHHHHHHhCCChHHHHH
Q 046764 455 FSMQQSLKDISKKIVIRCNGLPLAAKT 481 (1113)
Q Consensus 455 ~~~~~~l~~i~~~I~~~c~GlPLAi~~ 481 (1113)
. --.+.+..|++.++|-+-.+..
T Consensus 197 -~---id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 197 -K---YEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred -C---CCHHHHHHHHHHcCCCHHHHHH
Confidence 1 1135667788899997754443
No 185
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=39.51 E-value=1.1e+02 Score=34.74 Aligned_cols=72 Identities=14% Similarity=0.164 Sum_probs=48.9
Q ss_pred cCcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEecCC-hhhHhhh-CCCceEecCCCCHHHHHHHHHhc
Q 046764 377 SGKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTTRN-RDVAAIM-GSVRDYPLKESTKDDCLQVFTQH 448 (1113)
Q Consensus 377 ~~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTTR~-~~va~~~-~~~~~~~l~~L~~~~s~~LF~~~ 448 (1113)
.+++=.+|+|++...+....+.+...+..-..++.+|.+|.+ ..+.... ....++++++++.++....+...
T Consensus 108 ~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 108 ESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred ccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 345557899999877666677777766654556777766655 3333322 22368999999999987777653
No 186
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=37.48 E-value=9.6 Score=24.63 Aligned_cols=12 Identities=25% Similarity=0.097 Sum_probs=4.7
Q ss_pred cceEEEcCCcee
Q 046764 657 KLHHLDNFDFCC 668 (1113)
Q Consensus 657 ~L~~L~L~~~~i 668 (1113)
+|++|++++|.+
T Consensus 3 ~L~~L~l~~n~i 14 (24)
T PF13516_consen 3 NLETLDLSNNQI 14 (24)
T ss_dssp T-SEEE-TSSBE
T ss_pred CCCEEEccCCcC
Confidence 444455544443
No 187
>PRK09183 transposase/IS protein; Provisional
Probab=37.33 E-value=83 Score=34.51 Aligned_cols=39 Identities=18% Similarity=0.236 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCCChhhhhh--hcccccCC-CCCcEEEEecCC
Q 046764 379 KKFLLVLGDVWNENYSDWDS--LSLPFEAG-APGSQIIVTTRN 418 (1113)
Q Consensus 379 kr~LiVLDDv~~~~~~~w~~--l~~~l~~~-~~gSrIivTTR~ 418 (1113)
+.-++|+||+.......+.. +...+... ..++ +|+||..
T Consensus 164 ~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 164 APRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred CCCEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 33589999997643333332 22222111 2355 7788764
No 188
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=37.14 E-value=80 Score=37.03 Aligned_cols=113 Identities=9% Similarity=0.038 Sum_probs=59.4
Q ss_pred EEEEEEeccc----chhhhcccccC----------Cc--CCCCCHHHHHHHHHHHhcCcEEEEEEecCCCCC--------
Q 046764 337 HLLSLSIMMP----NIIRFIATADQ----------PV--NGTDELGLLQEKLKNQMSGKKFLLVLGDVWNEN-------- 392 (1113)
Q Consensus 337 ~vi~I~G~gG----tLA~~vi~~~~----------~~--~~~~~~~~l~~~l~~~L~~kr~LiVLDDv~~~~-------- 392 (1113)
+-+-++|..| ++|+.+..... .. ........+.+.+.........+|++|++...-
T Consensus 180 kgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~ 259 (398)
T PTZ00454 180 RGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQT 259 (398)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccC
Confidence 4466788888 77777711100 00 001112223333333345677899999976420
Q ss_pred --hhhhh----hhccccc--CCCCCcEEEEecCChhhHhh--h---CCCceEecCCCCHHHHHHHHHhcc
Q 046764 393 --YSDWD----SLSLPFE--AGAPGSQIIVTTRNRDVAAI--M---GSVRDYPLKESTKDDCLQVFTQHC 449 (1113)
Q Consensus 393 --~~~w~----~l~~~l~--~~~~gSrIivTTR~~~va~~--~---~~~~~~~l~~L~~~~s~~LF~~~a 449 (1113)
..+.. .+...+. ....+-+||+||...+.... . .-+..+++...+.++-..+|....
T Consensus 260 ~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~ 329 (398)
T PTZ00454 260 GADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTIT 329 (398)
T ss_pred CccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHH
Confidence 00111 1111111 11245678888876543322 1 234578999999998888887654
No 189
>PRK06526 transposase; Provisional
Probab=36.89 E-value=1.3e+02 Score=32.94 Aligned_cols=17 Identities=0% Similarity=-0.320 Sum_probs=12.9
Q ss_pred eEEEEEEeccc----chhhhc
Q 046764 336 LHLLSLSIMMP----NIIRFI 352 (1113)
Q Consensus 336 ~~vi~I~G~gG----tLA~~v 352 (1113)
-.-+.++|..| +||..+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al 118 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGL 118 (254)
T ss_pred CceEEEEeCCCCchHHHHHHH
Confidence 45678899988 677766
No 190
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=36.61 E-value=99 Score=31.11 Aligned_cols=73 Identities=10% Similarity=0.185 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHh-----cCcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEecCChh-hHhhh-CCCceEecCCC
Q 046764 364 ELGLLQEKLKNQM-----SGKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTTRNRD-VAAIM-GSVRDYPLKES 436 (1113)
Q Consensus 364 ~~~~l~~~l~~~L-----~~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTTR~~~-va~~~-~~~~~~~l~~L 436 (1113)
..+++. .+.+.+ .+++=.+|+||+...+.+.+..+...+..-..++++|++|++.+ +.... .-...+.++++
T Consensus 83 ~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 83 KIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp SHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE---
T ss_pred hHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecCCC
Confidence 455555 444443 34566889999999888888888888776667888888888754 33322 22356666665
Q ss_pred C
Q 046764 437 T 437 (1113)
Q Consensus 437 ~ 437 (1113)
+
T Consensus 162 s 162 (162)
T PF13177_consen 162 S 162 (162)
T ss_dssp -
T ss_pred C
Confidence 3
No 191
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.31 E-value=4e+02 Score=32.97 Aligned_cols=105 Identities=12% Similarity=0.167 Sum_probs=65.9
Q ss_pred cCcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEE-EecCChhhHhhh-CCCceEecCCCCHHHHHHHHHhcccCCCC
Q 046764 377 SGKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQII-VTTRNRDVAAIM-GSVRDYPLKESTKDDCLQVFTQHCLGMRD 454 (1113)
Q Consensus 377 ~~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIi-vTTR~~~va~~~-~~~~~~~l~~L~~~~s~~LF~~~af~~~~ 454 (1113)
.+++-++|+|++...+....+.+...+..-.....+| +||....+.... .....++.++++.++..+...+.+-..+
T Consensus 116 ~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~eg- 194 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEG- 194 (584)
T ss_pred cCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcC-
Confidence 3456688999998877677777777666544455555 455545444332 2246899999999988777766543222
Q ss_pred CCCchhHHHHHHHHHHHhCCCh-HHHHHHHhh
Q 046764 455 FSMQQSLKDISKKIVIRCNGLP-LAAKTLAGL 485 (1113)
Q Consensus 455 ~~~~~~l~~i~~~I~~~c~GlP-LAi~~ig~~ 485 (1113)
... -.+....|++.++|-+ -|+..+-..
T Consensus 195 i~i---~~~al~~Ia~~s~GdlR~aln~Ldql 223 (584)
T PRK14952 195 VVV---DDAVYPLVIRAGGGSPRDTLSVLDQL 223 (584)
T ss_pred CCC---CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 111 1245677888999977 455554443
No 192
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=34.92 E-value=63 Score=38.31 Aligned_cols=54 Identities=24% Similarity=0.309 Sum_probs=29.9
Q ss_pred HHHHhcCcEEEEEEecCCCCChhhh-hhhccccc-CCCCCcEEEEecCChhhHhhh
Q 046764 372 LKNQMSGKKFLLVLGDVWNENYSDW-DSLSLPFE-AGAPGSQIIVTTRNRDVAAIM 425 (1113)
Q Consensus 372 l~~~L~~kr~LiVLDDv~~~~~~~w-~~l~~~l~-~~~~gSrIivTTR~~~va~~~ 425 (1113)
+.+.+-+..+|+|||.=...=..+= ..+..++. ....|..+||.|....+...+
T Consensus 483 LARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~ 538 (580)
T COG4618 483 LARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASV 538 (580)
T ss_pred HHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhc
Confidence 5666788999999997533200110 11222222 124566677777767776543
No 193
>PRK08181 transposase; Validated
Probab=33.55 E-value=35 Score=37.57 Aligned_cols=37 Identities=22% Similarity=0.175 Sum_probs=19.7
Q ss_pred EEEEEecCCCCChhhhh--hhcccccCC-CCCcEEEEecCC
Q 046764 381 FLLVLGDVWNENYSDWD--SLSLPFEAG-APGSQIIVTTRN 418 (1113)
Q Consensus 381 ~LiVLDDv~~~~~~~w~--~l~~~l~~~-~~gSrIivTTR~ 418 (1113)
=||||||+......+|. .+...+... ..+ .+||||..
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~-s~IiTSN~ 208 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERR-SILITANQ 208 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCC-CEEEEcCC
Confidence 48999999655433332 122222211 124 48888875
No 194
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=33.52 E-value=1.5e+02 Score=33.64 Aligned_cols=95 Identities=14% Similarity=0.203 Sum_probs=61.6
Q ss_pred CcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEecCC-hhhHhhh-CCCceEecCCCCHHHHHHHHHhcccCCCCC
Q 046764 378 GKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTTRN-RDVAAIM-GSVRDYPLKESTKDDCLQVFTQHCLGMRDF 455 (1113)
Q Consensus 378 ~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTTR~-~~va~~~-~~~~~~~l~~L~~~~s~~LF~~~af~~~~~ 455 (1113)
+++-++|+|++...+...-..+...+..-..++.+|++|.. ..+.... .-...+.+.+++.+++....... + .+
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~--~-~~- 187 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQ--G-VS- 187 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHc--C-CC-
Confidence 56678999999887655555665555443446666666654 4444332 22367899999999988777643 1 11
Q ss_pred CCchhHHHHHHHHHHHhCCChHHHHHH
Q 046764 456 SMQQSLKDISKKIVIRCNGLPLAAKTL 482 (1113)
Q Consensus 456 ~~~~~l~~i~~~I~~~c~GlPLAi~~i 482 (1113)
..-+..++..++|-|+.+..+
T Consensus 188 ------~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 188 ------ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred ------hHHHHHHHHHcCCCHHHHHHH
Confidence 122567789999999866544
No 195
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=32.71 E-value=2e+02 Score=33.00 Aligned_cols=92 Identities=17% Similarity=0.311 Sum_probs=61.6
Q ss_pred CcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEecCC-hhhHhhh-CCCceEecCCCCHHHHHHHHHhcccCCCCC
Q 046764 378 GKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTTRN-RDVAAIM-GSVRDYPLKESTKDDCLQVFTQHCLGMRDF 455 (1113)
Q Consensus 378 ~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTTR~-~~va~~~-~~~~~~~l~~L~~~~s~~LF~~~af~~~~~ 455 (1113)
+++-.+|+|++...+...+..+...+..-.+++.+|.+|.+ ..+.... .-...+.+.+++.++..+.+... + .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~--~-~-- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ--G-V-- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc--C-C--
Confidence 45567889999988878888887777655556665555554 5444332 22368999999999998887664 1 1
Q ss_pred CCchhHHHHHHHHHHHhCCChHHHHH
Q 046764 456 SMQQSLKDISKKIVIRCNGLPLAAKT 481 (1113)
Q Consensus 456 ~~~~~l~~i~~~I~~~c~GlPLAi~~ 481 (1113)
++ ...++..++|.|..+..
T Consensus 206 ---~~----~~~~l~~~~Gsp~~Al~ 224 (342)
T PRK06964 206 ---AD----ADALLAEAGGAPLAALA 224 (342)
T ss_pred ---Ch----HHHHHHHcCCCHHHHHH
Confidence 11 12357788999965443
No 196
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=32.53 E-value=3.4e+02 Score=33.43 Aligned_cols=100 Identities=13% Similarity=0.123 Sum_probs=60.8
Q ss_pred cCcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEE-EecCChhhHhhh-CCCceEecCCCCHHHHHHHHHhcccCCCC
Q 046764 377 SGKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQII-VTTRNRDVAAIM-GSVRDYPLKESTKDDCLQVFTQHCLGMRD 454 (1113)
Q Consensus 377 ~~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIi-vTTR~~~va~~~-~~~~~~~l~~L~~~~s~~LF~~~af~~~~ 454 (1113)
.+++-++|+|++...+...+..+...+..-.....+| +||....+.... .....++..+++.++....+.+.+-..+
T Consensus 117 ~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~eg- 195 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEG- 195 (559)
T ss_pred cCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcC-
Confidence 4566788999998776566777776654433344444 455444443322 2235788999999988777776653222
Q ss_pred CCCchhHHHHHHHHHHHhCCChHHHH
Q 046764 455 FSMQQSLKDISKKIVIRCNGLPLAAK 480 (1113)
Q Consensus 455 ~~~~~~l~~i~~~I~~~c~GlPLAi~ 480 (1113)
... -.+....|++.++|-+..+.
T Consensus 196 i~i---~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 196 IEY---EDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred CCC---CHHHHHHHHHHcCCCHHHHH
Confidence 111 12456778888888775433
No 197
>PRK04132 replication factor C small subunit; Provisional
Probab=32.38 E-value=2.6e+02 Score=36.13 Aligned_cols=116 Identities=11% Similarity=0.132 Sum_probs=72.5
Q ss_pred CCHHHHHHHHHHHhc-----C-cEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEecCC-hhhHhhh-CCCceEecC
Q 046764 363 DELGLLQEKLKNQMS-----G-KKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTTRN-RDVAAIM-GSVRDYPLK 434 (1113)
Q Consensus 363 ~~~~~l~~~l~~~L~-----~-kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTTR~-~~va~~~-~~~~~~~l~ 434 (1113)
.+.+.+.+.+.+... + +.-++|||++...+....+.+...+..-....++|.+|.+ ..+.... ....++.++
T Consensus 608 rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~ 687 (846)
T PRK04132 608 RGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFR 687 (846)
T ss_pred ccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCC
Confidence 356666666655432 2 4579999999998777777777666543345566555554 4443222 223689999
Q ss_pred CCCHHHHHHHHHhcccCCCCCCCchhHHHHHHHHHHHhCCChH-HHHHH
Q 046764 435 ESTKDDCLQVFTQHCLGMRDFSMQQSLKDISKKIVIRCNGLPL-AAKTL 482 (1113)
Q Consensus 435 ~L~~~~s~~LF~~~af~~~~~~~~~~l~~i~~~I~~~c~GlPL-Ai~~i 482 (1113)
+++.++-.....+.+-.. +...+ .+....|++.|+|-+- |+..+
T Consensus 688 ~ls~~~i~~~L~~I~~~E-gi~i~---~e~L~~Ia~~s~GDlR~AIn~L 732 (846)
T PRK04132 688 PLRDEDIAKRLRYIAENE-GLELT---EEGLQAILYIAEGDMRRAINIL 732 (846)
T ss_pred CCCHHHHHHHHHHHHHhc-CCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 999988877766554221 11111 3467889999999884 44443
No 198
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.00 E-value=2.4e+02 Score=34.94 Aligned_cols=102 Identities=12% Similarity=0.166 Sum_probs=61.6
Q ss_pred CcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEE-EecCChhhHhhh-CCCceEecCCCCHHHHHHHHHhcccCCCCC
Q 046764 378 GKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQII-VTTRNRDVAAIM-GSVRDYPLKESTKDDCLQVFTQHCLGMRDF 455 (1113)
Q Consensus 378 ~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIi-vTTR~~~va~~~-~~~~~~~l~~L~~~~s~~LF~~~af~~~~~ 455 (1113)
+++-++|+|++...+....+.+...+..-.....+| +||....+.... .....++.++++.++-...+...+-. .+.
T Consensus 118 ~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~-egi 196 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQ-EGI 196 (576)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHH-hCC
Confidence 455678899997766566677766665433455555 555555554332 22357889999998877666654322 211
Q ss_pred CCchhHHHHHHHHHHHhCCCh-HHHHHHH
Q 046764 456 SMQQSLKDISKKIVIRCNGLP-LAAKTLA 483 (1113)
Q Consensus 456 ~~~~~l~~i~~~I~~~c~GlP-LAi~~ig 483 (1113)
.. -.+....|++.++|-. .|+..+-
T Consensus 197 ~i---~~~al~~la~~a~G~lr~al~~Ld 222 (576)
T PRK14965 197 SI---SDAALALVARKGDGSMRDSLSTLD 222 (576)
T ss_pred CC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 11 1245677888888855 4555543
No 199
>PRK07261 topology modulation protein; Provisional
Probab=31.89 E-value=59 Score=33.09 Aligned_cols=51 Identities=10% Similarity=0.127 Sum_probs=32.2
Q ss_pred EEEEEeccc----chhhhcccc--------c----CCcCCCCCHHHHHHHHHHHhcCcEEEEEEecCCC
Q 046764 338 LLSLSIMMP----NIIRFIATA--------D----QPVNGTDELGLLQEKLKNQMSGKKFLLVLGDVWN 390 (1113)
Q Consensus 338 vi~I~G~gG----tLA~~vi~~--------~----~~~~~~~~~~~l~~~l~~~L~~kr~LiVLDDv~~ 390 (1113)
.|.|+|++| |||+++... . .......+.++....+.+.+.+.+ .|+|+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--wIidg~~~ 68 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERDDDDMIADISNFLLKHD--WIIDGNYS 68 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCCHHHHHHHHHHHHhCCC--EEEcCcch
Confidence 478999998 999988110 0 000123345677777777887766 57777643
No 200
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=31.75 E-value=34 Score=23.22 Aligned_cols=14 Identities=43% Similarity=0.641 Sum_probs=9.7
Q ss_pred ccccEEecCCCCCc
Q 046764 609 KHLRHLDLSETDIQ 622 (1113)
Q Consensus 609 ~~Lr~L~Ls~~~i~ 622 (1113)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46777777777664
No 201
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=31.36 E-value=1.6e+02 Score=33.34 Aligned_cols=98 Identities=15% Similarity=0.152 Sum_probs=62.4
Q ss_pred cCcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEecCChhhHhhh-CCCceEecCCCCHHHHHHHHHhcccCCCCC
Q 046764 377 SGKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTTRNRDVAAIM-GSVRDYPLKESTKDDCLQVFTQHCLGMRDF 455 (1113)
Q Consensus 377 ~~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTTR~~~va~~~-~~~~~~~l~~L~~~~s~~LF~~~af~~~~~ 455 (1113)
.+++-++|+|++...+....+.+...+..-.++.-|++|++...+.... .....+.+.++++++..+.+.+.... ..
T Consensus 122 ~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~-~~- 199 (314)
T PRK07399 122 EAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDE-EI- 199 (314)
T ss_pred cCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcc-cc-
Confidence 4567789999998876666776666554333334445555544444432 23368999999999999988876311 11
Q ss_pred CCchhHHHHHHHHHHHhCCChHHHHH
Q 046764 456 SMQQSLKDISKKIVIRCNGLPLAAKT 481 (1113)
Q Consensus 456 ~~~~~l~~i~~~I~~~c~GlPLAi~~ 481 (1113)
.......++..++|-|..+..
T Consensus 200 -----~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 200 -----LNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred -----chhHHHHHHHHcCCCHHHHHH
Confidence 011135778899999965544
No 202
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=30.56 E-value=65 Score=35.72 Aligned_cols=97 Identities=13% Similarity=0.098 Sum_probs=65.6
Q ss_pred EEEEEecCCCCChhhhhhhcccccCCCCCcEEEEecCChh-----hHhhhCCCceEecCCCCHHHHHHHHHhcccCCCCC
Q 046764 381 FLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTTRNRD-----VAAIMGSVRDYPLKESTKDDCLQVFTQHCLGMRDF 455 (1113)
Q Consensus 381 ~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTTR~~~-----va~~~~~~~~~~l~~L~~~~s~~LF~~~af~~~~~ 455 (1113)
-.||||+++..+.+.|..+.....+...-+|.|..+..-+ +..+| .-|.-++|.+++...-+...+-..+-
T Consensus 131 KiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC---~KfrFk~L~d~~iv~rL~~Ia~~E~v- 206 (346)
T KOG0989|consen 131 KIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRC---QKFRFKKLKDEDIVDRLEKIASKEGV- 206 (346)
T ss_pred eEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhH---HHhcCCCcchHHHHHHHHHHHHHhCC-
Confidence 3678999999988999999988877666666655554322 23333 45888999999888777776633221
Q ss_pred CCchhHHHHHHHHHHHhCCC-hHHHHHHHh
Q 046764 456 SMQQSLKDISKKIVIRCNGL-PLAAKTLAG 484 (1113)
Q Consensus 456 ~~~~~l~~i~~~I~~~c~Gl-PLAi~~ig~ 484 (1113)
+--.+..+.|++.++|- --|+.++-+
T Consensus 207 ---~~d~~al~~I~~~S~GdLR~Ait~Lqs 233 (346)
T KOG0989|consen 207 ---DIDDDALKLIAKISDGDLRRAITTLQS 233 (346)
T ss_pred ---CCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 11235678899999885 456655543
No 203
>CHL00176 ftsH cell division protein; Validated
Probab=30.35 E-value=1.9e+02 Score=36.22 Aligned_cols=133 Identities=13% Similarity=0.139 Sum_probs=70.5
Q ss_pred EEEEEEeccc----chhhhcccccC------------CcCCCCCHHHHHHHHHHHhcCcEEEEEEecCCCCC--------
Q 046764 337 HLLSLSIMMP----NIIRFIATADQ------------PVNGTDELGLLQEKLKNQMSGKKFLLVLGDVWNEN-------- 392 (1113)
Q Consensus 337 ~vi~I~G~gG----tLA~~vi~~~~------------~~~~~~~~~~l~~~l~~~L~~kr~LiVLDDv~~~~-------- 392 (1113)
+-+-++|..| ++|+.+..... ..........+...+........++|++||++...
T Consensus 217 ~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~ 296 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIG 296 (638)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCC
Confidence 3466889998 78887711100 00001122233444555556778999999995431
Q ss_pred --hhhhh----hhccccc--CCCCCcEEEEecCChhhHhh-h----CCCceEecCCCCHHHHHHHHHhcccCCCCCCCch
Q 046764 393 --YSDWD----SLSLPFE--AGAPGSQIIVTTRNRDVAAI-M----GSVRDYPLKESTKDDCLQVFTQHCLGMRDFSMQQ 459 (1113)
Q Consensus 393 --~~~w~----~l~~~l~--~~~~gSrIivTTR~~~va~~-~----~~~~~~~l~~L~~~~s~~LF~~~af~~~~~~~~~ 459 (1113)
..+++ .+...+. ....|-.||.||...+.... + .-+..+.+...+.++-.++++.++-. .... +
T Consensus 297 ~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~-~~~~--~ 373 (638)
T CHL00176 297 GGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARN-KKLS--P 373 (638)
T ss_pred CCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhh-cccc--h
Confidence 11222 2222221 12345667777776543321 1 23367888888988888888877532 1111 1
Q ss_pred hHHHHHHHHHHHhCC
Q 046764 460 SLKDISKKIVIRCNG 474 (1113)
Q Consensus 460 ~l~~i~~~I~~~c~G 474 (1113)
......+++.+.|
T Consensus 374 --d~~l~~lA~~t~G 386 (638)
T CHL00176 374 --DVSLELIARRTPG 386 (638)
T ss_pred --hHHHHHHHhcCCC
Confidence 1233556666666
No 204
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=30.09 E-value=2.5e+02 Score=34.07 Aligned_cols=132 Identities=9% Similarity=0.054 Sum_probs=66.9
Q ss_pred EEEEeccc----chhhhcccccCC------------cCCCCCHHHHHHHHHHHhcCcEEEEEEecCCCCC----------
Q 046764 339 LSLSIMMP----NIIRFIATADQP------------VNGTDELGLLQEKLKNQMSGKKFLLVLGDVWNEN---------- 392 (1113)
Q Consensus 339 i~I~G~gG----tLA~~vi~~~~~------------~~~~~~~~~l~~~l~~~L~~kr~LiVLDDv~~~~---------- 392 (1113)
+-++|..| ++|+.+.....- .........+...+.........+|++||++...
T Consensus 91 iLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~ 170 (495)
T TIGR01241 91 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGG 170 (495)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCc
Confidence 45788888 788877111100 0001122334444444445567899999995521
Q ss_pred hhhhhhhcc----ccc--CCCCCcEEEEecCChhhHh-h----hCCCceEecCCCCHHHHHHHHHhcccCCCCCCCchhH
Q 046764 393 YSDWDSLSL----PFE--AGAPGSQIIVTTRNRDVAA-I----MGSVRDYPLKESTKDDCLQVFTQHCLGMRDFSMQQSL 461 (1113)
Q Consensus 393 ~~~w~~l~~----~l~--~~~~gSrIivTTR~~~va~-~----~~~~~~~~l~~L~~~~s~~LF~~~af~~~~~~~~~~l 461 (1113)
...+..... .+. ....+-.||.||...+... . ..-+..+++...+.++-.++|..++-+. ......+
T Consensus 171 ~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~-~~~~~~~- 248 (495)
T TIGR01241 171 NDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNK-KLAPDVD- 248 (495)
T ss_pred cHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcC-CCCcchh-
Confidence 011222111 111 1223455677776543211 1 1234678999999888888888765221 1111112
Q ss_pred HHHHHHHHHHhCCC
Q 046764 462 KDISKKIVIRCNGL 475 (1113)
Q Consensus 462 ~~i~~~I~~~c~Gl 475 (1113)
...+++.+.|.
T Consensus 249 ---l~~la~~t~G~ 259 (495)
T TIGR01241 249 ---LKAVARRTPGF 259 (495)
T ss_pred ---HHHHHHhCCCC
Confidence 23666777663
No 205
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=29.45 E-value=6.6e+02 Score=30.69 Aligned_cols=45 Identities=16% Similarity=0.089 Sum_probs=31.3
Q ss_pred EEEEecCCCCC-hhhhhhhcccccCCCCCcEEEEecCChhhHhhhC
Q 046764 382 LLVLGDVWNEN-YSDWDSLSLPFEAGAPGSQIIVTTRNRDVAAIMG 426 (1113)
Q Consensus 382 LiVLDDv~~~~-~~~w~~l~~~l~~~~~gSrIivTTR~~~va~~~~ 426 (1113)
-+|+|.|+..= -..-..+...+..-+..+.|++.|...+||....
T Consensus 456 tlIFDEVD~GIsG~~A~aVg~~L~~Ls~~~QVl~VTHlPQVAa~ad 501 (557)
T COG0497 456 TLIFDEVDTGISGRVAQAVGKKLRRLSEHHQVLCVTHLPQVAAMAD 501 (557)
T ss_pred eEEEecccCCCChHHHHHHHHHHHHHhcCceEEEEecHHHHHhhhc
Confidence 79999996641 1223445555555567889999999999997643
No 206
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=29.25 E-value=3.1e+02 Score=35.40 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=14.8
Q ss_pred ceEecCCCCHHHHHHHHHhcc
Q 046764 429 RDYPLKESTKDDCLQVFTQHC 449 (1113)
Q Consensus 429 ~~~~l~~L~~~~s~~LF~~~a 449 (1113)
.+++..+++.++-.++.+++.
T Consensus 486 ~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 486 EVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred eeeecCCCCHHHHHHHHHHhh
Confidence 467788888777776666554
No 207
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=28.76 E-value=3.1e+02 Score=31.15 Aligned_cols=71 Identities=14% Similarity=0.221 Sum_probs=42.4
Q ss_pred CcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEecCCh-hhHhhh-CCCceEecCCCCHHHHHHHHHhc
Q 046764 378 GKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTTRNR-DVAAIM-GSVRDYPLKESTKDDCLQVFTQH 448 (1113)
Q Consensus 378 ~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTTR~~-~va~~~-~~~~~~~l~~L~~~~s~~LF~~~ 448 (1113)
+++-.+|+|++...+...-..+...+.....+..+|++|.+. .+.... .....+.+.+++.++..+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 344455668887765555555544443323455566666664 344332 22367899999999988777553
No 208
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=28.71 E-value=1.4e+02 Score=35.44 Aligned_cols=42 Identities=12% Similarity=0.150 Sum_probs=30.0
Q ss_pred CCcEEEEecCChhhHhhh-----CCCceEecCCCCHHHHHHHHHhcc
Q 046764 408 PGSQIIVTTRNRDVAAIM-----GSVRDYPLKESTKDDCLQVFTQHC 449 (1113)
Q Consensus 408 ~gSrIivTTR~~~va~~~-----~~~~~~~l~~L~~~~s~~LF~~~a 449 (1113)
.+-+||+||...+..... ..+..+++...+.++-.++|..++
T Consensus 321 ~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~ 367 (438)
T PTZ00361 321 GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHT 367 (438)
T ss_pred CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHH
Confidence 356788888865544331 123578999999999999998775
No 209
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=27.82 E-value=27 Score=36.76 Aligned_cols=53 Identities=11% Similarity=0.140 Sum_probs=27.8
Q ss_pred eEEEEEEecccchhhhcccccCCc-----CCCCCHHHHHHHHHHHhcCcEEEEEEecC
Q 046764 336 LHLLSLSIMMPNIIRFIATADQPV-----NGTDELGLLQEKLKNQMSGKKFLLVLGDV 388 (1113)
Q Consensus 336 ~~vi~I~G~gGtLA~~vi~~~~~~-----~~~~~~~~l~~~l~~~L~~kr~LiVLDDv 388 (1113)
+.++.|.||||++...++....+. .-.--...-...||++|....|-|+=.-+
T Consensus 86 ~d~ivIAGMGG~lI~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L~~~~~~I~~E~i 143 (226)
T COG2384 86 IDVIVIAGMGGTLIREILEEGKEKLKGVERLILQPNIHTYELREWLSANSYEIKAETI 143 (226)
T ss_pred cCEEEEeCCcHHHHHHHHHHhhhhhcCcceEEECCCCCHHHHHHHHHhCCceeeeeee
Confidence 789999999996666663221100 00000111123567777766666654433
No 210
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=26.09 E-value=1.1e+02 Score=32.93 Aligned_cols=42 Identities=26% Similarity=0.426 Sum_probs=26.4
Q ss_pred cCcEEEEEEecCCCC-ChhhhhhhcccccCC---CCCcEEEEecCC
Q 046764 377 SGKKFLLVLGDVWNE-NYSDWDSLSLPFEAG---APGSQIIVTTRN 418 (1113)
Q Consensus 377 ~~kr~LiVLDDv~~~-~~~~w~~l~~~l~~~---~~gSrIivTTR~ 418 (1113)
+.+||.|..||..-+ .....+.++..+.-+ .+...++..|.+
T Consensus 137 ~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 137 RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 468999999999543 234577777776533 344445555544
No 211
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=25.86 E-value=59 Score=42.11 Aligned_cols=100 Identities=12% Similarity=0.135 Sum_probs=53.8
Q ss_pred CcEEEEEEecCCCCCh-hh----hhhhcccccCCCCCcEEEEecCChhhHhhhCCC---ceEecCCCCHHHHHHHHHhcc
Q 046764 378 GKKFLLVLGDVWNENY-SD----WDSLSLPFEAGAPGSQIIVTTRNRDVAAIMGSV---RDYPLKESTKDDCLQVFTQHC 449 (1113)
Q Consensus 378 ~kr~LiVLDDv~~~~~-~~----w~~l~~~l~~~~~gSrIivTTR~~~va~~~~~~---~~~~l~~L~~~~s~~LF~~~a 449 (1113)
.++-|+++|.+-..+. .+ ...+...+.. ..|+++++||...+++...... ..+.|....+++... |..++
T Consensus 670 t~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~-~~~~~~~~~TH~~eL~~l~~~~~~v~n~~~~~~~~~~~l~-flYkl 747 (840)
T TIGR01070 670 TENSLVLFDEIGRGTSTYDGLALAWAIAEYLHE-HIRAKTLFATHYFELTALEESLPGLKNVHVAALEHNGTIV-FLHQV 747 (840)
T ss_pred CCCEEEEEccCCCCCChhHHHHHHHHHHHHHHh-cCCCEEEEEcCchHHHHHhhhCCCeEEEEEEEEEECCcEE-EEEEE
Confidence 5789999999955321 11 1122223322 2688999999998877654211 234443322222111 22222
Q ss_pred cCCCCCCCchhHHHHHHHHHHHhCCChHHHHHHHhhh
Q 046764 450 LGMRDFSMQQSLKDISKKIVIRCNGLPLAAKTLAGLL 486 (1113)
Q Consensus 450 f~~~~~~~~~~l~~i~~~I~~~c~GlPLAi~~ig~~L 486 (1113)
-.+. + -...|-+|++.+ |+|-.++.-|..+
T Consensus 748 ~~G~---~---~~Sygi~VA~la-GlP~~VI~rA~~i 777 (840)
T TIGR01070 748 LPGP---A---SKSYGLAVAALA-GLPKEVIARARQI 777 (840)
T ss_pred CCCC---C---CCcHHHHHHHHc-CCCHHHHHHHHHH
Confidence 1111 1 134577777776 7998888776654
No 212
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=25.36 E-value=1.2e+02 Score=32.79 Aligned_cols=47 Identities=13% Similarity=0.203 Sum_probs=28.1
Q ss_pred CcEEEEEEecCCCCCh-hhhh----hhcccccCCCCCcEEEEecCChhhHhhh
Q 046764 378 GKKFLLVLGDVWNENY-SDWD----SLSLPFEAGAPGSQIIVTTRNRDVAAIM 425 (1113)
Q Consensus 378 ~kr~LiVLDDv~~~~~-~~w~----~l~~~l~~~~~gSrIivTTR~~~va~~~ 425 (1113)
.++-||++|.+...+. .+=. .+...+.. ..++++++||...+++...
T Consensus 121 ~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~-~~~~~~i~~TH~~~l~~~~ 172 (235)
T PF00488_consen 121 TEKSLVLIDELGRGTNPEEGIAIAIAILEYLLE-KSGCFVIIATHFHELAELL 172 (235)
T ss_dssp -TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHH-TTT-EEEEEES-GGGGGHH
T ss_pred ccceeeecccccCCCChhHHHHHHHHHHHHHHH-hccccEEEEeccchhHHHh
Confidence 4678999999976532 1111 12222322 2578999999999987764
No 213
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=25.04 E-value=1.2e+02 Score=30.48 Aligned_cols=50 Identities=16% Similarity=0.208 Sum_probs=30.2
Q ss_pred HHHHHhcCcE-EEEEEecCCCC---ChhhhhhhcccccCCCCCcEEEEecCChh
Q 046764 371 KLKNQMSGKK-FLLVLGDVWNE---NYSDWDSLSLPFEAGAPGSQIIVTTRNRD 420 (1113)
Q Consensus 371 ~l~~~L~~kr-~LiVLDDv~~~---~~~~w~~l~~~l~~~~~gSrIivTTR~~~ 420 (1113)
..++.+.... =|+|||++-.. ..-..+.+...+.....+.-||+|.|+..
T Consensus 86 ~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 86 FAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 3444554444 49999998543 11233445554544455678999999843
No 214
>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]
Probab=24.58 E-value=1.4e+02 Score=31.79 Aligned_cols=63 Identities=14% Similarity=0.124 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHHHHHhcCcEEEEEEecCCCCCh--hhhhhhcccccCCCCCcEEEEecCChhhHh
Q 046764 361 GTDELGLLQEKLKNQMSGKKFLLVLGDVWNENY--SDWDSLSLPFEAGAPGSQIIVTTRNRDVAA 423 (1113)
Q Consensus 361 ~~~~~~~l~~~l~~~L~~kr~LiVLDDv~~~~~--~~w~~l~~~l~~~~~gSrIivTTR~~~va~ 423 (1113)
..-..+++.+.++..-.+..+.-|+|||=-... ..-......|+...+|-|.||.+......+
T Consensus 247 ksv~~~elr~lyk~~YedE~lvhV~ddvPlvkdv~gsh~v~~ggF~~~~~g~Ravii~tIDNLlK 311 (340)
T KOG4354|consen 247 KSVRTEELRQLYKTSYEDEELVHVLDDVPLVKDVRGSHYVHMGGFPDRIPGDRAVIISTIDNLLK 311 (340)
T ss_pred CcccHHHHHHHHHhhccCcceeeeeccccceeccCCcceeEeccccCCCCCceEEEEEehhhhhh
Confidence 455677888888888999999999999833210 111223456888888877776666655544
No 215
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=24.31 E-value=5e+02 Score=33.53 Aligned_cols=20 Identities=15% Similarity=0.167 Sum_probs=14.0
Q ss_pred ceEecCCCCHHHHHHHHHhc
Q 046764 429 RDYPLKESTKDDCLQVFTQH 448 (1113)
Q Consensus 429 ~~~~l~~L~~~~s~~LF~~~ 448 (1113)
.++++.+++.++-..++.++
T Consensus 485 ~vi~~~~~~~~e~~~I~~~~ 504 (775)
T TIGR00763 485 EVIELSGYTEEEKLEIAKKY 504 (775)
T ss_pred eEEecCCCCHHHHHHHHHHH
Confidence 46788888877776666554
No 216
>PRK08116 hypothetical protein; Validated
Probab=21.10 E-value=66 Score=35.47 Aligned_cols=37 Identities=30% Similarity=0.422 Sum_probs=21.3
Q ss_pred EEEEecCCCCChhhhhh--hcccccCC-CCCcEEEEecCC
Q 046764 382 LLVLGDVWNENYSDWDS--LSLPFEAG-APGSQIIVTTRN 418 (1113)
Q Consensus 382 LiVLDDv~~~~~~~w~~--l~~~l~~~-~~gSrIivTTR~ 418 (1113)
||||||+......+|.. +..-+... ..|..+||||..
T Consensus 181 lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 181 LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 89999995543355643 22222111 245668888874
No 217
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=20.78 E-value=4.3e+02 Score=29.61 Aligned_cols=95 Identities=14% Similarity=0.189 Sum_probs=59.8
Q ss_pred CcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEec-CChhhHhh-hCCCceEecCCCCHHHHHHHHHhcccCCCCC
Q 046764 378 GKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTT-RNRDVAAI-MGSVRDYPLKESTKDDCLQVFTQHCLGMRDF 455 (1113)
Q Consensus 378 ~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTT-R~~~va~~-~~~~~~~~l~~L~~~~s~~LF~~~af~~~~~ 455 (1113)
+++=++|+||+...+......+...+..-.+++.+|.+| ....+... .....+++..++++++....+... + .
T Consensus 89 ~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~--~-~-- 163 (299)
T PRK07132 89 SQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK--N-K-- 163 (299)
T ss_pred CCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc--C-C--
Confidence 577788899997776566777776666555567666555 44555543 233478999999999987766553 1 1
Q ss_pred CCchhHHHHHHHHHHHhCCChHHHHHH
Q 046764 456 SMQQSLKDISKKIVIRCNGLPLAAKTL 482 (1113)
Q Consensus 456 ~~~~~l~~i~~~I~~~c~GlPLAi~~i 482 (1113)
.+ +.+..++...+|.--|+..+
T Consensus 164 --~~---~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 164 --EK---EYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred --Ch---hHHHHHHHHcCCHHHHHHHH
Confidence 11 23555566666633455543
No 218
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=20.41 E-value=66 Score=34.05 Aligned_cols=46 Identities=22% Similarity=0.196 Sum_probs=28.8
Q ss_pred EEEEEEecCCCC-ChhhhhhhcccccCCCCCcEEEEecCChhhHhhh
Q 046764 380 KFLLVLGDVWNE-NYSDWDSLSLPFEAGAPGSQIIVTTRNRDVAAIM 425 (1113)
Q Consensus 380 r~LiVLDDv~~~-~~~~w~~l~~~l~~~~~gSrIivTTR~~~va~~~ 425 (1113)
.=++|||||... +......+...+....+.+.+||||..+.++..+
T Consensus 159 ~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a 205 (220)
T PF02463_consen 159 SPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDA 205 (220)
T ss_dssp -SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 347899999664 2233445555555555678999999999988765
No 219
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.30 E-value=3.9e+02 Score=33.40 Aligned_cols=71 Identities=8% Similarity=0.108 Sum_probs=36.2
Q ss_pred CcEEEEEEecCCCCCh---hhhhhhcc-cccCCCCCcEEEEecCCh-------------------hhHhhhCCCceEecC
Q 046764 378 GKKFLLVLGDVWNENY---SDWDSLSL-PFEAGAPGSQIIVTTRNR-------------------DVAAIMGSVRDYPLK 434 (1113)
Q Consensus 378 ~kr~LiVLDDv~~~~~---~~w~~l~~-~l~~~~~gSrIivTTR~~-------------------~va~~~~~~~~~~l~ 434 (1113)
+++.+|+||++....+ .....+.. .+...+.-.-|+|||-.. ++...+ ...+++.+
T Consensus 194 ~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~-rv~~I~Fn 272 (637)
T TIGR00602 194 TDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEP-RVSNISFN 272 (637)
T ss_pred CceeEEEeecchhhchhhHHHHHHHHHHHhhcCCCceEEEEecCCccccccccccccchhcccCHhHhccc-ceeEEEeC
Confidence 5678999999944311 23344433 222222223455566221 111111 11468899
Q ss_pred CCCHHHHHHHHHhcc
Q 046764 435 ESTKDDCLQVFTQHC 449 (1113)
Q Consensus 435 ~L~~~~s~~LF~~~a 449 (1113)
|+....-.+.+.+.+
T Consensus 273 Pia~t~l~K~L~rIl 287 (637)
T TIGR00602 273 PIAPTIMKKFLNRIV 287 (637)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999888555554443
Done!