Query 046764
Match_columns 1113
No_of_seqs 779 out of 4003
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 06:56:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046764.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046764hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 4.3E-29 1.5E-33 317.1 22.2 284 789-1098 393-737 (768)
2 2a5y_B CED-4; apoptosis; HET: 100.0 1.9E-29 6.5E-34 306.7 17.7 195 364-580 227-471 (549)
3 3rgz_A Protein brassinosteroid 100.0 1.1E-28 3.8E-33 313.3 23.9 203 892-1104 437-723 (768)
4 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-26 3.9E-31 287.5 31.3 450 592-1078 32-558 (606)
5 3t6q_A CD180 antigen; protein- 99.9 2.1E-26 7.3E-31 285.0 28.7 93 593-685 34-135 (606)
6 3j0a_A TOLL-like receptor 5; m 99.9 5.7E-25 2E-29 282.1 37.8 452 590-1097 22-556 (844)
7 3vq2_A TLR4, TOLL-like recepto 99.9 1.1E-25 3.8E-30 278.6 27.9 439 609-1100 32-557 (606)
8 1ziw_A TOLL-like receptor 3; i 99.9 4.7E-25 1.6E-29 276.8 33.6 479 588-1099 45-620 (680)
9 3t6q_A CD180 antigen; protein- 99.9 2.4E-25 8.1E-30 275.6 29.3 445 609-1099 33-558 (606)
10 2z81_A CD282 antigen, TOLL-lik 99.9 1.6E-25 5.3E-30 273.8 24.0 441 592-1078 26-510 (549)
11 1ziw_A TOLL-like receptor 3; i 99.9 7E-25 2.4E-29 275.2 30.2 451 588-1078 69-622 (680)
12 3j0a_A TOLL-like receptor 5; m 99.9 3.2E-24 1.1E-28 275.1 33.0 443 586-1078 42-560 (844)
13 4eco_A Uncharacterized protein 99.9 3E-25 1E-29 275.4 20.4 265 786-1101 326-632 (636)
14 2z63_A TOLL-like receptor 4, v 99.9 2.2E-24 7.6E-29 264.8 24.2 239 813-1078 276-531 (570)
15 2z7x_B TOLL-like receptor 1, v 99.9 3.7E-24 1.3E-28 259.7 23.9 416 592-1076 21-479 (520)
16 4ecn_A Leucine-rich repeat pro 99.9 6.9E-24 2.4E-28 267.8 24.9 251 786-1082 569-843 (876)
17 2z81_A CD282 antigen, TOLL-lik 99.9 8.1E-24 2.8E-28 258.6 23.3 432 609-1100 26-509 (549)
18 2z63_A TOLL-like receptor 4, v 99.9 4.3E-23 1.5E-27 253.3 26.6 243 784-1055 276-531 (570)
19 4eco_A Uncharacterized protein 99.9 1.2E-23 4.2E-28 260.9 20.5 369 621-1079 195-633 (636)
20 2z7x_B TOLL-like receptor 1, v 99.9 6.6E-23 2.3E-27 248.7 26.0 415 609-1100 21-480 (520)
21 1jl5_A Outer protein YOPM; leu 99.9 4.1E-23 1.4E-27 245.1 22.7 385 607-1099 9-427 (454)
22 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 8.1E-23 2.8E-27 250.3 24.2 402 592-1076 52-508 (562)
23 4g8a_A TOLL-like receptor 4; l 99.9 6.1E-22 2.1E-26 246.0 29.2 124 592-723 52-185 (635)
24 3sfz_A APAF-1, apoptotic pepti 99.9 1.7E-23 5.9E-28 280.8 16.3 182 363-576 218-448 (1249)
25 4ecn_A Leucine-rich repeat pro 99.9 1.4E-22 4.8E-27 255.9 22.5 366 648-1101 440-840 (876)
26 1vt4_I APAF-1 related killer D 99.9 4.8E-23 1.6E-27 252.7 12.0 171 366-574 228-437 (1221)
27 1o6v_A Internalin A; bacterial 99.9 2.4E-21 8.1E-26 231.6 26.4 338 591-1059 45-392 (466)
28 3bz5_A Internalin-J, INLJ; leu 99.9 1.1E-21 3.6E-26 233.1 20.8 61 604-668 37-97 (457)
29 1jl5_A Outer protein YOPM; leu 99.9 1E-21 3.5E-26 233.1 20.1 381 591-1078 10-429 (454)
30 4g8a_A TOLL-like receptor 4; l 99.9 4.4E-20 1.5E-24 229.3 31.3 451 587-1076 71-578 (635)
31 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 7.8E-21 2.7E-25 232.7 21.9 434 591-1100 30-509 (562)
32 1o6v_A Internalin A; bacterial 99.8 4.5E-20 1.5E-24 220.4 25.7 274 582-960 58-341 (466)
33 3v47_A TOLL-like receptor 5B a 99.8 6.1E-20 2.1E-24 218.6 21.2 356 609-1055 30-408 (455)
34 4fmz_A Internalin; leucine ric 99.8 1.1E-19 3.7E-24 208.3 20.7 298 605-1076 40-344 (347)
35 1z6t_A APAF-1, apoptotic prote 99.8 7.2E-20 2.5E-24 225.5 19.1 181 363-576 218-448 (591)
36 3v47_A TOLL-like receptor 5B a 99.8 2.7E-19 9.1E-24 213.1 21.1 362 611-1082 12-412 (455)
37 3bz5_A Internalin-J, INLJ; leu 99.8 8.4E-19 2.9E-23 208.2 22.7 309 625-1058 35-355 (457)
38 3o6n_A APL1; leucine-rich repe 99.8 5.1E-19 1.7E-23 206.2 20.5 281 607-960 43-328 (390)
39 4fmz_A Internalin; leucine ric 99.8 4.9E-19 1.7E-23 202.8 19.7 276 587-961 39-322 (347)
40 2id5_A Lingo-1, leucine rich r 99.8 2.2E-18 7.5E-23 206.5 24.7 305 612-1075 14-330 (477)
41 3oja_B Anopheles plasmodium-re 99.8 1.4E-18 4.9E-23 213.9 20.5 300 608-983 50-354 (597)
42 2id5_A Lingo-1, leucine rich r 99.8 8.5E-18 2.9E-22 201.4 22.2 271 604-961 51-331 (477)
43 3o6n_A APL1; leucine-rich repe 99.7 1.3E-17 4.4E-22 194.3 17.8 292 590-961 43-350 (390)
44 3oja_B Anopheles plasmodium-re 99.7 1.8E-17 6.3E-22 204.1 17.5 291 591-961 50-356 (597)
45 3ogk_B Coronatine-insensitive 99.7 1E-18 3.5E-23 215.3 2.8 367 607-1055 110-526 (592)
46 4fcg_A Uncharacterized protein 99.7 3.8E-16 1.3E-20 177.1 18.1 60 608-668 80-139 (328)
47 1xku_A Decorin; proteoglycan, 99.7 2.9E-15 1E-19 170.1 21.0 269 608-962 30-305 (330)
48 3g06_A SSPH2 (leucine-rich rep 99.6 5.3E-15 1.8E-19 180.9 24.3 54 609-668 40-93 (622)
49 1xku_A Decorin; proteoglycan, 99.6 4.7E-15 1.6E-19 168.4 21.8 286 593-960 32-329 (330)
50 1ogq_A PGIP-2, polygalacturona 99.6 2.9E-16 1E-20 176.9 10.9 62 609-670 50-115 (313)
51 2ft3_A Biglycan; proteoglycan, 99.6 3.6E-15 1.2E-19 169.5 19.5 266 609-961 33-305 (332)
52 2p1m_B Transport inhibitor res 99.6 8.3E-18 2.9E-22 207.2 -4.2 384 607-1031 103-518 (594)
53 3ogk_B Coronatine-insensitive 99.6 7.3E-17 2.5E-21 198.7 2.4 340 707-1096 160-543 (592)
54 2ft3_A Biglycan; proteoglycan, 99.6 1.1E-14 3.9E-19 165.4 18.8 76 593-669 34-115 (332)
55 3g06_A SSPH2 (leucine-rich rep 99.6 6.9E-14 2.4E-18 171.0 24.6 236 790-1078 61-297 (622)
56 4fcg_A Uncharacterized protein 99.6 1.2E-14 4.2E-19 164.7 15.5 57 817-875 79-140 (328)
57 1z7x_W Ribonuclease inhibitor; 99.6 3E-17 1E-21 195.6 -7.4 61 608-669 2-69 (461)
58 3zyj_A Leucine-rich repeat-con 99.6 6.7E-14 2.3E-18 165.6 21.0 133 786-961 156-290 (440)
59 3zyi_A Leucine-rich repeat-con 99.6 3.8E-14 1.3E-18 168.3 18.7 58 609-667 75-134 (452)
60 3zyi_A Leucine-rich repeat-con 99.6 5.6E-14 1.9E-18 166.9 19.3 213 819-1076 75-301 (452)
61 1ogq_A PGIP-2, polygalacturona 99.6 6.4E-15 2.2E-19 165.9 10.4 244 790-1081 50-307 (313)
62 3zyj_A Leucine-rich repeat-con 99.5 9.3E-14 3.2E-18 164.4 19.2 213 819-1076 64-290 (440)
63 2z80_A TOLL-like receptor 2, v 99.5 5.6E-14 1.9E-18 161.1 16.8 153 789-961 148-312 (353)
64 2p1m_B Transport inhibitor res 99.5 2.6E-16 8.8E-21 193.9 -4.4 388 605-1050 62-513 (594)
65 3o53_A Protein LRIM1, AGAP0063 99.5 3.8E-15 1.3E-19 168.1 4.7 39 1018-1056 236-277 (317)
66 3o53_A Protein LRIM1, AGAP0063 99.5 6.4E-15 2.2E-19 166.3 5.2 62 605-668 30-92 (317)
67 2z66_A Variable lymphocyte rec 99.5 1.8E-13 6.2E-18 153.5 16.2 86 858-961 171-259 (306)
68 2z66_A Variable lymphocyte rec 99.5 2.3E-13 7.8E-18 152.7 17.0 59 609-668 28-90 (306)
69 2z80_A TOLL-like receptor 2, v 99.5 1.8E-13 6.3E-18 156.8 14.4 238 817-1078 50-314 (353)
70 1z7x_W Ribonuclease inhibitor; 99.4 3.5E-15 1.2E-19 177.6 -4.9 353 592-984 3-408 (461)
71 4ay9_X Follicle-stimulating ho 99.4 3.6E-12 1.2E-16 145.8 19.7 217 823-1083 13-241 (350)
72 2xwt_C Thyrotropin receptor; s 99.4 1.9E-12 6.3E-17 139.6 15.6 75 1000-1077 157-238 (239)
73 3oja_A Leucine-rich immune mol 99.4 7.3E-13 2.5E-17 158.4 12.9 61 606-668 31-92 (487)
74 3qfl_A MLA10; coiled-coil, (CC 99.4 2.9E-13 9.9E-18 126.6 6.6 79 198-292 3-83 (115)
75 1ozn_A Reticulon 4 receptor; N 99.4 3.4E-12 1.2E-16 141.5 16.3 52 612-666 14-66 (285)
76 1wwl_A Monocyte differentiatio 99.4 2.8E-13 9.7E-18 152.4 7.2 67 604-673 38-112 (312)
77 3oja_A Leucine-rich immune mol 99.4 3.7E-13 1.3E-17 161.0 6.9 230 788-1073 32-270 (487)
78 1ozn_A Reticulon 4 receptor; N 99.3 1.2E-11 4.1E-16 137.0 17.2 209 822-1075 14-235 (285)
79 1h6u_A Internalin H; cell adhe 99.3 6.6E-12 2.3E-16 140.8 13.9 61 605-668 37-97 (308)
80 1p9a_G Platelet glycoprotein I 99.3 1.8E-11 6.1E-16 136.0 17.0 62 604-668 5-67 (290)
81 1wwl_A Monocyte differentiatio 99.3 4.2E-12 1.4E-16 142.8 11.1 67 611-678 65-142 (312)
82 4ay9_X Follicle-stimulating ho 99.3 3.6E-11 1.2E-15 137.4 18.4 54 612-668 12-66 (350)
83 1p9a_G Platelet glycoprotein I 99.3 3.7E-11 1.3E-15 133.4 16.5 100 815-929 6-110 (290)
84 2o6q_A Variable lymphocyte rec 99.3 7.7E-11 2.6E-15 129.4 18.9 56 610-668 17-73 (270)
85 2ast_B S-phase kinase-associat 99.3 4.3E-13 1.5E-17 152.4 0.5 70 609-678 70-140 (336)
86 3rfs_A Internalin B, repeat mo 99.3 1.9E-11 6.4E-16 134.5 13.0 80 588-669 37-122 (272)
87 2xwt_C Thyrotropin receptor; s 99.3 2E-11 7E-16 131.4 12.5 59 610-668 32-93 (239)
88 2z62_A TOLL-like receptor 4, v 99.2 3.3E-11 1.1E-15 132.8 14.0 59 609-668 28-88 (276)
89 2ast_B S-phase kinase-associat 99.2 3E-12 1E-16 145.4 4.6 57 610-669 48-106 (336)
90 1h6u_A Internalin H; cell adhe 99.2 5.7E-11 2E-15 133.1 14.5 190 816-1059 38-234 (308)
91 2o6q_A Variable lymphocyte rec 99.2 2.6E-10 9E-15 125.1 18.4 56 819-876 16-75 (270)
92 2ca6_A RAN GTPase-activating p 99.2 2.7E-12 9.1E-17 149.0 1.1 237 589-876 29-317 (386)
93 2z62_A TOLL-like receptor 4, v 99.2 1.1E-10 3.8E-15 128.5 13.4 78 592-670 28-114 (276)
94 4glp_A Monocyte differentiatio 99.1 1.3E-10 4.4E-15 130.4 12.0 38 917-961 143-180 (310)
95 2ca6_A RAN GTPase-activating p 99.1 3.7E-12 1.3E-16 147.8 -1.7 117 610-755 10-133 (386)
96 3rfs_A Internalin B, repeat mo 99.1 6.6E-10 2.3E-14 122.1 15.6 170 839-1053 39-216 (272)
97 3m19_A Variable lymphocyte rec 99.1 1.4E-09 4.8E-14 117.9 16.5 58 609-668 14-71 (251)
98 4glp_A Monocyte differentiatio 99.1 1.9E-10 6.4E-15 129.1 9.7 55 819-875 251-307 (310)
99 1h6t_A Internalin B; cell adhe 99.0 4.5E-10 1.5E-14 124.7 11.3 61 605-668 42-102 (291)
100 3goz_A Leucine-rich repeat-con 99.0 5.8E-11 2E-15 136.4 3.6 64 607-670 20-94 (362)
101 1h6t_A Internalin B; cell adhe 99.0 1.8E-09 6E-14 119.9 13.1 78 588-668 42-124 (291)
102 1m9s_A Internalin B; cell inva 99.0 6.9E-10 2.3E-14 135.5 10.5 57 607-666 41-97 (605)
103 1m9s_A Internalin B; cell inva 99.0 2.6E-09 9E-14 130.3 14.2 79 588-669 39-122 (605)
104 4ezg_A Putative uncharacterize 99.0 1.1E-09 3.9E-14 113.8 9.4 151 606-829 41-191 (197)
105 3goz_A Leucine-rich repeat-con 98.9 2.7E-10 9.3E-15 130.8 4.5 231 613-873 2-264 (362)
106 3cvr_A Invasion plasmid antige 98.9 4.2E-09 1.4E-13 127.1 14.7 53 610-668 60-112 (571)
107 3m19_A Variable lymphocyte rec 98.9 1.1E-08 3.7E-13 110.8 15.5 55 819-875 14-72 (251)
108 3cvr_A Invasion plasmid antige 98.9 7.5E-09 2.6E-13 124.9 14.1 31 819-851 80-110 (571)
109 4ezg_A Putative uncharacterize 98.9 2E-09 6.7E-14 112.1 7.6 146 589-755 41-192 (197)
110 1dce_A Protein (RAB geranylger 98.9 4.7E-11 1.6E-15 144.9 -5.6 39 605-643 345-383 (567)
111 1xeu_A Internalin C; cellular 98.8 7.2E-09 2.5E-13 113.1 7.4 61 605-668 37-97 (263)
112 2o6s_A Variable lymphocyte rec 98.7 4.1E-08 1.4E-12 102.9 11.5 60 859-929 49-110 (208)
113 2o6s_A Variable lymphocyte rec 98.7 5.7E-08 1.9E-12 101.8 12.1 129 609-755 28-159 (208)
114 1xeu_A Internalin C; cellular 98.7 3.6E-08 1.2E-12 107.5 10.9 144 585-755 34-183 (263)
115 2v9t_B SLIT homolog 2 protein 98.7 3.7E-08 1.3E-12 104.3 9.9 123 592-755 32-163 (220)
116 2v9t_B SLIT homolog 2 protein 98.7 5.5E-08 1.9E-12 103.0 10.0 109 609-758 32-142 (220)
117 2ell_A Acidic leucine-rich nuc 98.7 3E-08 1E-12 100.1 7.6 135 607-756 22-159 (168)
118 2je0_A Acidic leucine-rich nuc 98.6 3E-08 1E-12 97.8 5.4 107 607-722 15-124 (149)
119 3e6j_A Variable lymphocyte rec 98.6 1.2E-07 4E-12 101.1 10.2 128 609-755 40-170 (229)
120 2v70_A SLIT-2, SLIT homolog 2 98.6 8.1E-08 2.8E-12 101.7 8.8 129 610-756 33-165 (220)
121 2v70_A SLIT-2, SLIT homolog 2 98.6 1.2E-07 4.2E-12 100.3 9.4 122 592-722 32-164 (220)
122 3e6j_A Variable lymphocyte rec 98.5 2E-07 6.9E-12 99.2 10.0 122 591-722 39-170 (229)
123 2xot_A Amphoterin-induced prot 98.4 2.1E-07 7.3E-12 106.4 8.2 125 592-722 39-174 (361)
124 3sb4_A Hypothetical leucine ri 98.4 1.3E-06 4.4E-11 98.6 14.5 243 818-1087 24-318 (329)
125 2ell_A Acidic leucine-rich nuc 98.4 1.9E-07 6.5E-12 94.1 6.8 125 592-722 24-158 (168)
126 1w8a_A SLIT protein; signaling 98.4 2.3E-07 7.8E-12 95.9 7.2 105 610-755 30-137 (192)
127 2wfh_A SLIT homolog 2 protein 98.4 4.5E-07 1.6E-11 93.7 9.3 60 609-669 31-91 (193)
128 2wfh_A SLIT homolog 2 protein 98.4 4.2E-07 1.4E-11 94.0 8.9 124 612-755 13-137 (193)
129 3sb4_A Hypothetical leucine ri 98.4 1.3E-06 4.5E-11 98.4 13.5 60 608-669 48-137 (329)
130 1a9n_A U2A', U2A'; complex (nu 98.4 2E-07 6.8E-12 94.8 6.1 79 588-668 15-100 (176)
131 1a9n_A U2A', U2A'; complex (nu 98.4 2.2E-07 7.5E-12 94.5 5.4 136 604-755 14-151 (176)
132 2xot_A Amphoterin-induced prot 98.4 4.5E-07 1.5E-11 103.7 8.4 132 609-755 39-174 (361)
133 2je0_A Acidic leucine-rich nuc 98.4 3.7E-07 1.3E-11 89.9 6.5 62 605-668 38-100 (149)
134 4b8c_D Glucose-repressible alc 98.4 3.7E-07 1.3E-11 114.2 7.7 74 605-680 220-293 (727)
135 1dce_A Protein (RAB geranylger 98.3 6.6E-07 2.2E-11 108.4 9.0 63 604-668 458-520 (567)
136 1w8a_A SLIT protein; signaling 98.3 6.8E-07 2.3E-11 92.3 7.4 77 593-670 30-116 (192)
137 4b8c_D Glucose-repressible alc 98.3 6E-07 2.1E-11 112.2 6.7 96 588-685 220-322 (727)
138 1ds9_A Outer arm dynein; leuci 98.2 1.1E-07 3.7E-12 98.8 -1.6 108 604-722 43-151 (198)
139 2r9u_A Variable lymphocyte rec 98.1 3.5E-06 1.2E-10 85.4 7.5 76 592-668 33-117 (174)
140 2o6r_A Variable lymphocyte rec 98.1 5.6E-06 1.9E-10 84.0 8.6 60 609-669 28-89 (177)
141 2o6r_A Variable lymphocyte rec 98.1 8.8E-06 3E-10 82.5 10.0 127 610-756 8-136 (177)
142 3g39_A Variable lymphocyte rec 98.1 5.8E-06 2E-10 83.4 7.7 54 612-668 12-66 (170)
143 1ds9_A Outer arm dynein; leuci 98.0 1.3E-06 4.3E-11 90.7 2.1 125 610-755 24-151 (198)
144 2r9u_A Variable lymphocyte rec 98.0 7.4E-06 2.5E-10 83.0 7.8 58 609-667 33-92 (174)
145 3g39_A Variable lymphocyte rec 98.0 8.8E-06 3E-10 82.0 7.4 61 605-666 50-112 (170)
146 4fs7_A Uncharacterized protein 97.9 0.00034 1.2E-08 80.6 20.8 60 603-665 65-126 (394)
147 4fdw_A Leucine rich hypothetic 97.9 0.00068 2.3E-08 78.2 21.3 211 820-1083 136-362 (401)
148 4fdw_A Leucine rich hypothetic 97.7 0.0016 5.4E-08 75.1 21.0 58 604-666 131-190 (401)
149 2ifg_A High affinity nerve gro 97.7 4.3E-05 1.5E-09 86.6 6.9 63 605-668 27-92 (347)
150 2ifg_A High affinity nerve gro 97.6 7.2E-05 2.5E-09 84.7 8.3 85 584-669 23-116 (347)
151 3un9_A NLR family member X1; l 97.4 1.7E-05 5.8E-10 90.7 -0.6 45 706-755 178-222 (372)
152 1njg_A DNA polymerase III subu 97.3 0.00069 2.4E-08 71.7 10.4 106 377-486 124-231 (250)
153 4fs7_A Uncharacterized protein 97.3 0.0087 3E-07 68.7 20.3 55 586-641 65-126 (394)
154 3un9_A NLR family member X1; l 97.2 6.1E-05 2.1E-09 86.1 1.3 47 704-755 204-250 (372)
155 2ra8_A Uncharacterized protein 97.2 0.00016 5.5E-09 82.0 4.5 58 1018-1075 251-317 (362)
156 2fna_A Conserved hypothetical 97.2 0.0008 2.7E-08 76.0 9.6 179 379-572 137-355 (357)
157 2ra8_A Uncharacterized protein 97.2 0.00018 6.2E-09 81.6 4.0 84 787-871 136-228 (362)
158 3e4g_A ATP synthase subunit S, 97.1 0.00035 1.2E-08 69.8 4.8 40 919-965 61-100 (176)
159 2chg_A Replication factor C sm 96.9 0.0032 1.1E-07 65.5 10.9 142 338-483 40-204 (226)
160 3e4g_A ATP synthase subunit S, 96.8 0.00062 2.1E-08 68.1 3.9 82 790-876 61-153 (176)
161 1io0_A Tropomodulin; LRR prote 96.8 0.00043 1.5E-08 70.6 2.2 63 606-668 33-105 (185)
162 3rw6_A Nuclear RNA export fact 96.7 0.001 3.4E-08 71.6 4.3 63 606-670 167-234 (267)
163 1io0_A Tropomodulin; LRR prote 96.6 0.00093 3.2E-08 68.1 3.2 79 589-668 33-135 (185)
164 1sxj_B Activator 1 37 kDa subu 96.5 0.012 4E-07 65.4 11.8 142 339-484 45-211 (323)
165 2qen_A Walker-type ATPase; unk 96.5 0.0061 2.1E-07 68.5 9.3 200 364-574 112-349 (350)
166 1w5s_A Origin recognition comp 96.4 0.0069 2.3E-07 69.9 9.3 114 365-483 122-266 (412)
167 1hqc_A RUVB; extended AAA-ATPa 96.2 0.0081 2.8E-07 66.9 8.2 144 337-485 39-213 (324)
168 4gt6_A Cell surface protein; l 96.1 0.058 2E-06 61.8 15.3 31 1018-1050 333-364 (394)
169 4gt6_A Cell surface protein; l 96.0 0.26 8.9E-06 56.2 20.2 63 1010-1074 298-366 (394)
170 3rw6_A Nuclear RNA export fact 95.5 0.0074 2.5E-07 64.9 3.8 73 590-663 168-258 (267)
171 2qby_B CDC6 homolog 3, cell di 94.9 0.1 3.5E-06 59.2 11.5 115 366-483 120-246 (384)
172 1iqp_A RFCS; clamp loader, ext 94.6 0.061 2.1E-06 59.5 8.4 103 378-484 109-213 (327)
173 4h09_A Hypothetical leucine ri 94.5 5.1 0.00017 44.9 24.3 54 1018-1072 285-340 (379)
174 2v1u_A Cell division control p 94.1 0.16 5.3E-06 57.6 10.6 113 365-483 114-250 (387)
175 4h09_A Hypothetical leucine ri 93.6 1 3.5E-05 50.7 16.2 59 604-666 64-123 (379)
176 2chq_A Replication factor C sm 93.1 0.47 1.6E-05 52.0 11.9 101 378-482 101-203 (319)
177 2qby_A CDC6 homolog 1, cell di 93.0 0.42 1.4E-05 53.9 11.5 113 365-480 112-242 (386)
178 1fnn_A CDC6P, cell division co 92.0 0.65 2.2E-05 52.5 11.5 113 365-480 109-244 (389)
179 1jr3_A DNA polymerase III subu 90.8 0.63 2.2E-05 52.3 9.7 103 377-483 117-221 (373)
180 3rfe_A Platelet glycoprotein I 90.7 0.22 7.4E-06 47.0 4.7 54 612-668 11-67 (130)
181 3bos_A Putative DNA replicatio 86.9 0.16 5.5E-06 53.1 0.9 101 378-482 103-216 (242)
182 2z4s_A Chromosomal replication 86.6 0.82 2.8E-05 52.9 6.8 99 379-481 194-304 (440)
183 1sxj_E Activator 1 40 kDa subu 85.1 4.1 0.00014 45.2 11.6 103 379-484 134-238 (354)
184 3rfe_A Platelet glycoprotein I 84.9 0.64 2.2E-05 43.8 3.9 33 610-642 32-65 (130)
185 1sxj_D Activator 1 41 kDa subu 84.2 4.1 0.00014 45.1 11.0 102 378-483 132-235 (353)
186 1pgv_A TMD-1, tropomodulin TMD 84.1 0.49 1.7E-05 48.0 2.8 62 608-669 40-111 (197)
187 3h4m_A Proteasome-activating n 82.5 4.5 0.00015 43.3 10.1 139 337-480 52-228 (285)
188 1a5t_A Delta prime, HOLB; zinc 82.4 7.2 0.00025 43.0 11.9 96 378-482 107-204 (334)
189 2qz4_A Paraplegin; AAA+, SPG7, 82.0 3.7 0.00013 43.2 9.0 138 337-477 40-215 (262)
190 3pvs_A Replication-associated 81.8 5.5 0.00019 45.9 11.0 146 336-482 50-214 (447)
191 1sxj_A Activator 1 95 kDa subu 79.1 3.4 0.00012 48.7 8.2 100 378-483 147-253 (516)
192 3u61_B DNA polymerase accessor 74.6 8.8 0.0003 41.9 9.5 136 337-480 49-213 (324)
193 1d2n_A N-ethylmaleimide-sensit 73.8 6.3 0.00022 41.8 7.9 130 336-474 64-228 (272)
194 1l8q_A Chromosomal replication 72.3 1.7 5.7E-05 47.9 2.8 92 380-477 99-202 (324)
195 1sxj_C Activator 1 40 kDa subu 71.6 15 0.00052 40.3 10.6 138 339-480 49-209 (340)
196 1pgv_A TMD-1, tropomodulin TMD 71.0 2.3 8E-05 42.9 3.3 94 628-753 37-135 (197)
197 2qp9_X Vacuolar protein sortin 70.8 28 0.00095 38.5 12.5 100 376-481 140-259 (355)
198 3pfi_A Holliday junction ATP-d 70.5 11 0.00036 41.5 9.0 136 338-481 57-225 (338)
199 3jrn_A AT1G72930 protein; TIR 69.2 1.5 5.3E-05 43.3 1.4 64 237-301 98-168 (176)
200 3syl_A Protein CBBX; photosynt 68.9 14 0.00047 39.9 9.3 68 381-450 132-218 (309)
201 3eie_A Vacuolar protein sortin 64.5 21 0.0007 38.9 9.6 133 337-475 52-219 (322)
202 1jbk_A CLPB protein; beta barr 62.1 3.8 0.00013 40.3 2.8 66 377-444 113-193 (195)
203 1xwi_A SKD1 protein; VPS4B, AA 59.3 64 0.0022 35.0 12.4 140 337-482 46-222 (322)
204 3d8b_A Fidgetin-like protein 1 56.5 41 0.0014 37.2 10.3 143 337-483 118-295 (357)
205 3uk6_A RUVB-like 2; hexameric 56.0 30 0.001 38.2 9.2 92 381-480 191-300 (368)
206 3b9p_A CG5977-PA, isoform A; A 54.0 83 0.0028 33.3 12.1 140 337-482 55-232 (297)
207 3ozi_A L6TR; plant TIR domain, 53.1 4.5 0.00015 40.8 1.5 49 237-286 126-181 (204)
208 3iee_A Putative exported prote 51.8 1.7E+02 0.0059 30.2 12.8 112 171-290 75-192 (270)
209 3ec2_A DNA replication protein 51.0 6.7 0.00023 38.6 2.4 81 337-418 39-142 (180)
210 2zan_A Vacuolar protein sortin 49.0 85 0.0029 35.8 11.7 101 377-481 225-343 (444)
211 2kjq_A DNAA-related protein; s 48.1 7.3 0.00025 37.3 2.0 17 336-352 36-56 (149)
212 1jr3_D DNA polymerase III, del 46.6 58 0.002 35.5 9.5 116 362-481 58-183 (343)
213 2gno_A DNA polymerase III, gam 44.8 33 0.0011 37.1 6.9 112 337-449 19-152 (305)
214 3te6_A Regulatory protein SIR3 43.4 1.1E+02 0.0037 33.1 10.8 105 377-484 130-281 (318)
215 3vfd_A Spastin; ATPase, microt 41.3 1.1E+02 0.0039 33.9 11.1 70 409-482 252-325 (389)
216 3cf0_A Transitional endoplasmi 37.6 81 0.0028 33.7 8.7 113 337-449 50-199 (301)
217 3a7p_A Autophagy protein 16; c 36.6 1.8E+02 0.0063 27.4 9.4 58 222-285 92-149 (152)
218 3hu3_A Transitional endoplasmi 35.2 72 0.0024 37.0 8.1 112 338-449 240-385 (489)
219 4fcw_A Chaperone protein CLPB; 33.3 56 0.0019 34.9 6.6 40 379-418 119-169 (311)
220 2w58_A DNAI, primosome compone 31.1 12 0.00041 37.5 0.5 37 382-418 118-158 (202)
221 4b4t_J 26S protease regulatory 30.9 2E+02 0.0067 32.3 10.4 134 337-475 183-353 (405)
222 3n70_A Transport activator; si 29.4 29 0.00099 32.6 2.9 38 381-418 78-115 (145)
223 3pxi_A Negative regulator of g 26.8 51 0.0018 40.6 5.3 66 381-448 581-674 (758)
224 2r62_A Cell division protease 26.1 27 0.00092 36.6 2.3 40 410-449 152-196 (268)
225 1ofh_A ATP-dependent HSL prote 25.0 1.1E+02 0.0036 32.5 6.9 20 429-448 195-214 (310)
226 2ce7_A Cell division protein F 24.5 1.2E+02 0.0042 34.8 7.5 111 339-449 52-199 (476)
227 1lv7_A FTSH; alpha/beta domain 23.4 2E+02 0.0068 29.5 8.5 111 339-449 48-195 (257)
228 1in4_A RUVB, holliday junction 23.2 2.3E+02 0.0079 30.5 9.3 48 429-480 173-220 (334)
229 4b4t_L 26S protease subunit RP 20.8 2.5E+02 0.0087 31.7 9.1 114 336-449 215-365 (437)
230 4b4t_K 26S protease regulatory 20.5 2.1E+02 0.0071 32.3 8.3 54 336-389 206-275 (428)
231 1g5t_A COB(I)alamin adenosyltr 20.5 59 0.002 32.5 3.3 68 369-436 109-180 (196)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=4.3e-29 Score=317.06 Aligned_cols=284 Identities=16% Similarity=0.116 Sum_probs=179.2
Q ss_pred CCCcceeeccccCcCcccccCCCCcccccCCCccEEEEecCcCcccccCC---CCCCccEEEEeccc---CccccCCCCC
Q 046764 789 FPSLETLRFENMQEREDWIPYSSSQEVEVFPNLRDLFLLRCSKLLGTLPK---HLPSLQKLVIQRCE---KLLVDLPSLP 862 (1113)
Q Consensus 789 ~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~lp~---~l~~L~~L~L~~c~---~L~~~l~~l~ 862 (1113)
+++|+.|+++++.-... .+..+..+++|+.|++++| .+.+.+|. .+++|+.|++++|. .++..+..++
T Consensus 393 ~~~L~~L~L~~n~l~~~-----~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 466 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGK-----IPPTLSNCSELVSLHLSFN-YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK 466 (768)
T ss_dssp TCCCCEEECCSSEEEEE-----CCGGGGGCTTCCEEECCSS-EEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred cCCccEEECCCCccccc-----cCHHHhcCCCCCEEECcCC-cccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCC
Confidence 55666666665532211 1234456666777777766 45545553 45666777776663 2233344566
Q ss_pred cccEEEEeccCCCCcccCCCccccccccccCCCCCCcccccccCCCCC--cCcccCCCCCCceEEEcccCCCcccccccC
Q 046764 863 SLNELKLGGCKKGGLQKGQPIIGRRIHYGCADTSSSLRVCLQCCNSLT--NNARVQLPLSLKDLSIAFCDNLRTLVEEEG 940 (1113)
Q Consensus 863 ~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~~l~~L~~L~~~~N~L~--~~~~l~~l~~L~~L~Ls~c~~L~~l~~~~~ 940 (1113)
+|++|++++|......+ ..+..+++|+.|++.+|.+. .+..+..+++|+.|++++|. +. +.
T Consensus 467 ~L~~L~L~~N~l~~~~p-----------~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~-----~~ 529 (768)
T 3rgz_A 467 TLETLILDFNDLTGEIP-----------SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS-FS-----GN 529 (768)
T ss_dssp TCCEEECCSSCCCSCCC-----------GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC-CE-----EE
T ss_pred CceEEEecCCcccCcCC-----------HHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCc-cc-----Cc
Confidence 77777777776654332 45667777777777777776 55667777777777777776 22 22
Q ss_pred CCCCcccCCCCccEEEeecCCCCcccCCCCCcC-CccC---------eEEEcc--------------------------c
Q 046764 941 IPKGSRKYSSHLECLHILSCPSPTSIFSENELP-ATLQ---------RLEVNS--------------------------C 984 (1113)
Q Consensus 941 lp~~l~~~l~~L~~L~L~~c~~L~~ll~~~~l~-~sL~---------~L~i~~--------------------------c 984 (1113)
+|..+. .+++|+.|++++|+.... +|..-.. ..+. ...+.+ +
T Consensus 530 ~p~~l~-~l~~L~~L~Ls~N~l~g~-ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 607 (768)
T 3rgz_A 530 IPAELG-DCRSLIWLDLNTNLFNGT-IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 607 (768)
T ss_dssp CCGGGG-GCTTCCEEECCSSEEESB-CCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGG
T ss_pred CCHHHc-CCCCCCEEECCCCccCCc-CChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcc
Confidence 444444 677788887777654333 2221000 0000 000000 0
Q ss_pred ccccccccc------------CCCCCCCeEEEEecCCCccccCCC---CCCccEEEEeecCCCCcccccCCCCCCcCeee
Q 046764 985 SKLALLTLS------------GNLPQGPKYLELTSCSKWESIADN---NTSLQVITVFRCKNLKTLPDGLHKLNNLQAFT 1049 (1113)
Q Consensus 985 ~~L~~l~l~------------~~lp~~L~~L~L~~c~~L~~lp~~---l~sL~~L~Ls~c~~l~~lP~~l~~L~sL~~L~ 1049 (1113)
..+..+.+. ++++. |+.|+++++.-...+|.. +++|+.|++++|...+.+|..++.+++|+.|+
T Consensus 608 ~~~~~~~l~~~~~~g~~~~~~~~l~~-L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~Ld 686 (768)
T 3rgz_A 608 STRNPCNITSRVYGGHTSPTFDNNGS-MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686 (768)
T ss_dssp GGTCCSCTTSCEEEEECCCSCSSSBC-CCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred ccccccccccceecccCchhhhcccc-ccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEE
Confidence 001101111 12334 999999998666678876 89999999999988889999999999999999
Q ss_pred e-ccccc-cccCCCCCCCCcCcEEEeCCCCCccCCCCCCCCCcCccccccc
Q 046764 1050 I-CKNLV-SFPKGGLPSTQLRDPDITGCQKLEALPDGDLSSTFKTGKSSKC 1098 (1113)
Q Consensus 1050 L-cn~L~-slp~~~~~~~sL~~L~l~~C~~L~~l~~~~l~~sL~~L~~~~c 1098 (1113)
| .|++. .+|.....+++|+.|++++|+--..+|.++...++....+.++
T Consensus 687 Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN 737 (768)
T 3rgz_A 687 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNN 737 (768)
T ss_dssp CCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSC
T ss_pred CCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCC
Confidence 9 88887 7787777778999999999877778888666556666555553
No 2
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.96 E-value=1.9e-29 Score=306.72 Aligned_cols=195 Identities=14% Similarity=0.174 Sum_probs=157.6
Q ss_pred CHHHHHHHHHHHhcCc-EEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEecCChhhHhhhC-CCceEecCCCCHHHH
Q 046764 364 ELGLLQEKLKNQMSGK-KFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTTRNRDVAAIMG-SVRDYPLKESTKDDC 441 (1113)
Q Consensus 364 ~~~~l~~~l~~~L~~k-r~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTTR~~~va~~~~-~~~~~~l~~L~~~~s 441 (1113)
+.+.++..+++.|++| ||||||||||+.+...|.. .+||+||||||++.|+..++ ...+|++++|+.++|
T Consensus 227 ~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea 298 (549)
T 2a5y_B 227 TSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDEC 298 (549)
T ss_dssp CHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHH
T ss_pred cHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHH
Confidence 3456788999999996 9999999999972212332 27999999999999999886 446899999999999
Q ss_pred HHHHHhcccCCCCCCCchhHHHHHHHHHHHhCCChHHHHHHHhhhcCCCCc-----------------------------
Q 046764 442 LQVFTQHCLGMRDFSMQQSLKDISKKIVIRCNGLPLAAKTLAGLLRGKNDP----------------------------- 492 (1113)
Q Consensus 442 ~~LF~~~af~~~~~~~~~~l~~i~~~I~~~c~GlPLAi~~ig~~L~~~~~~----------------------------- 492 (1113)
|+||.++||+... ++.+++++.+|+++|+|+||||+++|+.|+.+...
T Consensus 299 ~~Lf~~~a~~~~~---~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w~~~~~l~~~l~~~~~~~i~~~l~~Sy~~L~ 375 (549)
T 2a5y_B 299 YDFLEAYGMPMPV---GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVECITPYSYKSLA 375 (549)
T ss_dssp HHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCSSTTCCCSSSSSSSHH
T ss_pred HHHHHHHhcCCCC---chhHHHHHHHHHHHhCCChHHHHHHHHHhccchHHHHHHhHHHhhcccHHHHHHHHhccccccc
Confidence 9999999987532 46788999999999999999999999998765211
Q ss_pred -----ccc-----------cccccccccCcCCcccchhhHHHHHHHHc--CCCccCCchhhHHHHHHHHHHHHHhCCCcc
Q 046764 493 -----RFS-----------ACSIARYGIYQKNYEFHEEEEVTLLWMAE--GFPYHIDTKEEIQDLGHKFFHELYSRSSFQ 554 (1113)
Q Consensus 493 -----cfl-----------y~~~~~~~~fp~~~~i~~~~~Li~~Wiae--gfi~~~~~~~~~e~~~~~~~~~Lv~rsli~ 554 (1113)
||+ ||| +||+++.|+ +++|+|+ ||+.......+.+++++ ||++|++|||++
T Consensus 376 ~~lk~~f~~Ls~~er~l~~~ls-----~fp~~~~i~-----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~ 444 (549)
T 2a5y_B 376 MALQRCVEVLSDEDRSALAFAV-----VMPPGVDIP-----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALL 444 (549)
T ss_dssp HHHHHHHHTSCHHHHHHTTGGG-----SSCTTCCEE-----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCS
T ss_pred HHHHHHHhccchhhhhHhhhee-----eeCCCCeee-----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCee
Confidence 888 999 999999988 6899999 99987543566788888 999999999999
Q ss_pred ccCC-CCCceeechHHHHHHHHhcccc
Q 046764 555 QSSS-DPCRFLMHDLINDLAQWAGDLD 580 (1113)
Q Consensus 555 ~~~~-~~~~~~mHdlv~d~~~~i~~~~ 580 (1113)
.... ...+|+|||+||++|+++...+
T Consensus 445 ~~~~~~~~~~~mHdlv~~~a~~~~~~~ 471 (549)
T 2a5y_B 445 SGKRMPVLTFKIDHIIHMFLKHVVDAQ 471 (549)
T ss_dssp EEECSSSCEEECCHHHHHHHHTTSCTH
T ss_pred EecCCCceEEEeChHHHHHHHHHHHHH
Confidence 8653 4568999999999999886543
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=1.1e-28 Score=313.30 Aligned_cols=203 Identities=17% Similarity=0.153 Sum_probs=130.6
Q ss_pred cCCCCCCcccccccCCCCC--cCcccCCCCCCceEEEcccCCCcccccccCCCCCcccCCCCccEEEeecCCCCcccCCC
Q 046764 892 CADTSSSLRVCLQCCNSLT--NNARVQLPLSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHILSCPSPTSIFSE 969 (1113)
Q Consensus 892 ~~~~l~~L~~L~~~~N~L~--~~~~l~~l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~c~~L~~ll~~ 969 (1113)
.+..+++|+.|.+..|.+. .+..+..+++|+.|++++|. +. +.+|..+. .+++|++|++++|..... +|.
T Consensus 437 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~-l~-----~~~p~~l~-~l~~L~~L~L~~N~l~~~-~p~ 508 (768)
T 3rgz_A 437 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND-LT-----GEIPSGLS-NCTNLNWISLSNNRLTGE-IPK 508 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC-CC-----SCCCGGGG-GCTTCCEEECCSSCCCSC-CCG
T ss_pred HHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCc-cc-----CcCCHHHh-cCCCCCEEEccCCccCCc-CCh
Confidence 4555666666666666665 44556666666666666665 22 22344443 667777777777654433 332
Q ss_pred C--CcCCccCeEEEccccccccccc-cCCCCCCCeEEEEecCCCccccCC------------------------------
Q 046764 970 N--ELPATLQRLEVNSCSKLALLTL-SGNLPQGPKYLELTSCSKWESIAD------------------------------ 1016 (1113)
Q Consensus 970 ~--~l~~sL~~L~i~~c~~L~~l~l-~~~lp~~L~~L~L~~c~~L~~lp~------------------------------ 1016 (1113)
. .+ ++|+.|++++|.-...++- -++++. |+.|++++|+-...+|.
T Consensus 509 ~~~~l-~~L~~L~L~~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (768)
T 3rgz_A 509 WIGRL-ENLAILKLSNNSFSGNIPAELGDCRS-LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE 586 (768)
T ss_dssp GGGGC-TTCCEEECCSSCCEEECCGGGGGCTT-CCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTT
T ss_pred HHhcC-CCCCEEECCCCcccCcCCHHHcCCCC-CCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccc
Confidence 2 23 3677777766643322211 123444 77777766532222221
Q ss_pred ----------------------------------------C---CCCccEEEEeecCCCCcccccCCCCCCcCeeee-cc
Q 046764 1017 ----------------------------------------N---NTSLQVITVFRCKNLKTLPDGLHKLNNLQAFTI-CK 1052 (1113)
Q Consensus 1017 ----------------------------------------~---l~sL~~L~Ls~c~~l~~lP~~l~~L~sL~~L~L-cn 1052 (1113)
. +++|+.|++++|...+.+|..++++++|+.|++ .|
T Consensus 587 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N 666 (768)
T 3rgz_A 587 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 666 (768)
T ss_dssp CCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSS
T ss_pred ccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCC
Confidence 1 578999999999888899999999999999999 88
Q ss_pred ccc-cccCCCCCCCCcCcEEEeCCCCCccCCCC-CCCCCcCccccccc---cCCCCc
Q 046764 1053 NLV-SFPKGGLPSTQLRDPDITGCQKLEALPDG-DLSSTFKTGKSSKC---GIFPGG 1104 (1113)
Q Consensus 1053 ~L~-slp~~~~~~~sL~~L~l~~C~~L~~l~~~-~l~~sL~~L~~~~c---~~lp~~ 1104 (1113)
++. .+|.....+++|+.|++++|.--..+|.. .--..|+.|+++++ +.+|++
T Consensus 667 ~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred ccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 887 78887777889999999996655466652 11235888999987 556753
No 4
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=1.1e-26 Score=287.46 Aligned_cols=450 Identities=16% Similarity=0.115 Sum_probs=253.3
Q ss_pred CCeeEEccCCcC-------CCCCCccccEEecCCCCCccc-ChhhhccccccEEecccccccccc-cccccCCCcceEEE
Q 046764 592 ENLQTFLPTTVS-------HGGDLKHLRHLDLSETDIQIL-PESVNTLYNLRMLMLQKCNQLEKM-CSDMGNLLKLHHLD 662 (1113)
Q Consensus 592 ~~Lr~L~~~~~~-------~i~~L~~Lr~L~Ls~~~i~~L-P~~i~~L~~L~~LdL~~c~~l~~L-P~~i~~L~~L~~L~ 662 (1113)
+++|.|.+.++. .|+++++|++|+|++|.++.+ |..|+++++|++|+|++|. +..+ |..|+++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc-ccccChhhcCCcccCCEEE
Confidence 455555555543 455666666666666666655 4455666666666666543 3333 55566666666666
Q ss_pred cCCceecccccccccccc-ccccccceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHh------
Q 046764 663 NFDFCCWKDIDSALQELK-LLHLHGALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETH------ 735 (1113)
Q Consensus 663 L~~~~i~~~~~~~l~~L~-L~~L~g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~------ 735 (1113)
+++|.+....+..+.++. |++|. +.-+.+... ..+..++++++|+.|++++|...+..........
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~--L~~n~l~~~-----~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l 183 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLN--VAHNFIHSC-----KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEE--CCSSCCCCC-----CCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCC
T ss_pred ccCCccccccccccCCCCCCCEEe--CCCCcccce-----echHhHhhcCCCCEEEccCCcceecChhhhhhhhcccccc
Confidence 666655444444455555 44443 211211111 0122355556666666655542221111000000
Q ss_pred ------------hhccCCCCCCcceEEEeccCccc-----cccCccccc------cccc------------CCCc-----
Q 046764 736 ------------VLDMLKPHQNLERFCISGYGETL-----RFENMQERE------DWIP------------YSSS----- 775 (1113)
Q Consensus 736 ------------~l~~L~~~~~L~~L~L~~~~~~~-----~l~~L~~L~------~~Lp------------l~~l----- 775 (1113)
.........+|+.|+++++.... .+.++..++ +.++ +..+
T Consensus 184 ~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l 263 (606)
T 3vq2_A 184 LSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263 (606)
T ss_dssp CEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEE
T ss_pred ceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccH
Confidence 11111122367777777764321 111111111 0000 0000
Q ss_pred ccceE------ecC-CCCCCCCCcceeeccccCcCcccccCCCCcccccCCCccEEEEecCcCcccccCC-CCCCccEEE
Q 046764 776 QEVEF------YGN-GCLIPFPSLETLRFENMQEREDWIPYSSSQEVEVFPNLRDLFLLRCSKLLGTLPK-HLPSLQKLV 847 (1113)
Q Consensus 776 ~~~~~------~g~-~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~lp~-~l~~L~~L~ 847 (1113)
....+ .+. ..+..+++|+.|++.++.. ... + ....+++|++|++++| .+. .+|. .+++|+.|+
T Consensus 264 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~l-----~-~l~~~~~L~~L~l~~n-~l~-~lp~~~l~~L~~L~ 334 (606)
T 3vq2_A 264 DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI-KYL-----E-DVPKHFKWQSLSIIRC-QLK-QFPTLDLPFLKSLT 334 (606)
T ss_dssp EEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCC-CCC-----C-CCCTTCCCSEEEEESC-CCS-SCCCCCCSSCCEEE
T ss_pred hheeccccccccccccccccCCCCCEEEecCccc-hhh-----h-hccccccCCEEEcccc-cCc-ccccCCCCccceee
Confidence 00000 000 1244567777777776532 111 1 3456777888888887 443 5554 567788888
Q ss_pred EecccCcc-ccCCCCCcccEEEEeccCCCCcccCCCccccccccccCCCCCCcccccccCCCCC-cCcccCCCCCCceEE
Q 046764 848 IQRCEKLL-VDLPSLPSLNELKLGGCKKGGLQKGQPIIGRRIHYGCADTSSSLRVCLQCCNSLT-NNARVQLPLSLKDLS 925 (1113)
Q Consensus 848 L~~c~~L~-~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~~l~~L~~L~~~~N~L~-~~~~l~~l~~L~~L~ 925 (1113)
+++|..+. ..+..+++|++|++++|....... ....+..+++|+.|++..|.+. .+..+..+++|+.|+
T Consensus 335 l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~---------~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~ 405 (606)
T 3vq2_A 335 LTMNKGSISFKKVALPSLSYLDLSRNALSFSGC---------CSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLD 405 (606)
T ss_dssp EESCSSCEECCCCCCTTCCEEECCSSCEEEEEE---------CCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEE
T ss_pred ccCCcCccchhhccCCCCCEEECcCCccCCCcc---------hhhhhccCCcccEeECCCCccccchhhccCCCCCCeeE
Confidence 87774332 244457788888888776544210 1234567788888888887777 556778888888888
Q ss_pred EcccCCCcccccccCCC-CCcccCCCCccEEEeecCCCCcccCCC--CCcCCccCeEEEcccccccc-cc-ccCCCCCCC
Q 046764 926 IAFCDNLRTLVEEEGIP-KGSRKYSSHLECLHILSCPSPTSIFSE--NELPATLQRLEVNSCSKLAL-LT-LSGNLPQGP 1000 (1113)
Q Consensus 926 Ls~c~~L~~l~~~~~lp-~~l~~~l~~L~~L~L~~c~~L~~ll~~--~~l~~sL~~L~i~~c~~L~~-l~-l~~~lp~~L 1000 (1113)
+++|. +... .| ..+ ..+++|++|++++|..... .+. ..+ ++|++|+++++.--.. +. ..++++. |
T Consensus 406 l~~n~-l~~~-----~~~~~~-~~l~~L~~L~l~~n~l~~~-~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~-L 475 (606)
T 3vq2_A 406 FQHST-LKRV-----TEFSAF-LSLEKLLYLDISYTNTKID-FDGIFLGL-TSLNTLKMAGNSFKDNTLSNVFANTTN-L 475 (606)
T ss_dssp CTTSE-EEST-----TTTTTT-TTCTTCCEEECTTSCCEEC-CTTTTTTC-TTCCEEECTTCEEGGGEECSCCTTCTT-C
T ss_pred CCCCc-cCCc-----cChhhh-hccccCCEEECcCCCCCcc-chhhhcCC-CCCCEEECCCCcCCCcchHHhhccCCC-C
Confidence 88886 3332 22 123 3788888888888764333 332 233 3788888888754331 21 1234555 8
Q ss_pred eEEEEecCCCcccc-CCC---CCCccEEEEeecCCCCcccccCCCCCCcCeeee-ccccccccCCCCCCC-CcCcEEEeC
Q 046764 1001 KYLELTSCSKWESI-ADN---NTSLQVITVFRCKNLKTLPDGLHKLNNLQAFTI-CKNLVSFPKGGLPST-QLRDPDITG 1074 (1113)
Q Consensus 1001 ~~L~L~~c~~L~~l-p~~---l~sL~~L~Ls~c~~l~~lP~~l~~L~sL~~L~L-cn~L~slp~~~~~~~-sL~~L~l~~ 1074 (1113)
+.|++++| .+..+ |.. +++|++|++++|......|..+..+++|+.|++ .|++..+|.....++ +|+.|++++
T Consensus 476 ~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~ 554 (606)
T 3vq2_A 476 TFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTN 554 (606)
T ss_dssp CEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCS
T ss_pred CEEECCCC-cCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccC
Confidence 88888887 44444 333 788889999888655555888888888999998 888888887755554 588888888
Q ss_pred CCCC
Q 046764 1075 CQKL 1078 (1113)
Q Consensus 1075 C~~L 1078 (1113)
++-.
T Consensus 555 N~~~ 558 (606)
T 3vq2_A 555 NSVA 558 (606)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 6543
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=2.1e-26 Score=285.01 Aligned_cols=93 Identities=17% Similarity=0.051 Sum_probs=55.6
Q ss_pred CeeEEccCCcC-------CCCCCccccEEecCCCCCccc-ChhhhccccccEEecccccccccccccccCCCcceEEEcC
Q 046764 593 NLQTFLPTTVS-------HGGDLKHLRHLDLSETDIQIL-PESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNF 664 (1113)
Q Consensus 593 ~Lr~L~~~~~~-------~i~~L~~Lr~L~Ls~~~i~~L-P~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~ 664 (1113)
.++.|.+.++. .|+++++|++|+|++|.+..+ |..|+++++|++|+|++|......|..++++++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 45666655543 566666677777766666655 5566666677777776653333345566666666666666
Q ss_pred Cceecccccccccccc-ccccc
Q 046764 665 DFCCWKDIDSALQELK-LLHLH 685 (1113)
Q Consensus 665 ~~~i~~~~~~~l~~L~-L~~L~ 685 (1113)
+|.+....+..+..+. |++|.
T Consensus 114 ~n~i~~l~~~~~~~l~~L~~L~ 135 (606)
T 3t6q_A 114 QTGISSIDFIPLHNQKTLESLY 135 (606)
T ss_dssp TSCCSCGGGSCCTTCTTCCEEE
T ss_pred ccCcccCCcchhccCCcccEEE
Confidence 6665544444455555 44443
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=5.7e-25 Score=282.07 Aligned_cols=452 Identities=15% Similarity=0.104 Sum_probs=235.6
Q ss_pred CCCCeeEEccCCcC-------CCCCCccccEEecCCCC-Cccc-ChhhhccccccEEecccccccccccccccCCCcceE
Q 046764 590 EFENLQTFLPTTVS-------HGGDLKHLRHLDLSETD-IQIL-PESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHH 660 (1113)
Q Consensus 590 ~l~~Lr~L~~~~~~-------~i~~L~~Lr~L~Ls~~~-i~~L-P~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~ 660 (1113)
..+++++|.+.++. .|+++++|++|+|++|. +..+ |..|++|++|++|+|++|......|..++++++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 34677777776654 67788888888888884 4456 677888888888888875444444777888888888
Q ss_pred EEcCCceeccccccc--ccccc-ccccccceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhh
Q 046764 661 LDNFDFCCWKDIDSA--LQELK-LLHLHGALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVL 737 (1113)
Q Consensus 661 L~L~~~~i~~~~~~~--l~~L~-L~~L~g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l 737 (1113)
|++++|.+....+.. +..|+ |++|. +..+.+.... ....++++++|+.|+++.|...+...
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~--Ls~N~l~~~~-----~~~~~~~L~~L~~L~Ls~N~i~~~~~--------- 165 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLD--LSKNQIRSLY-----LHPSFGKLNSLKSIDFSSNQIFLVCE--------- 165 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEE--EESCCCCCCC-----CCGGGGTCSSCCEEEEESSCCCCCCS---------
T ss_pred eeCcCCCCCcccccCccccccCCCCEEE--CCCCcccccc-----cchhHhhCCCCCEEECCCCcCCeeCH---------
Confidence 888888765544433 56666 65554 3333332221 11246777788888887765322211
Q ss_pred ccCCCC--CCcceEEEeccCccc----cccC---------cccccccccCCCcccceEecC--C---CCCCCCCcceeec
Q 046764 738 DMLKPH--QNLERFCISGYGETL----RFEN---------MQEREDWIPYSSSQEVEFYGN--G---CLIPFPSLETLRF 797 (1113)
Q Consensus 738 ~~L~~~--~~L~~L~L~~~~~~~----~l~~---------L~~L~~~Lpl~~l~~~~~~g~--~---~l~~~~~L~~L~L 797 (1113)
..+..+ ++|+.|+++++.... .+.+ |+.|. +. +..+.+. . ......+++.|.+
T Consensus 166 ~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~----Ls---~n~l~~~~~~~~~~~l~~~~l~~L~l 238 (844)
T 3j0a_A 166 HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILD----VS---GNGWTVDITGNFSNAISKSQAFSLIL 238 (844)
T ss_dssp GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEB----CS---SCCSSTTTTSGGGGTSCSCCBSEEEC
T ss_pred HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEe----cC---CCcCchhHHHHHHhhcCcccccceec
Confidence 111112 567777776643222 0000 11111 00 0000000 0 0000122333333
Q ss_pred cccCcCcccccCC----CCcccc--cCCCccEEEEecCcCcccccCC---CCCCccEEEEecccCc---cccCCCCCccc
Q 046764 798 ENMQEREDWIPYS----SSQEVE--VFPNLRDLFLLRCSKLLGTLPK---HLPSLQKLVIQRCEKL---LVDLPSLPSLN 865 (1113)
Q Consensus 798 ~~~~~l~~~~~~~----~~~~~~--~~~~L~~L~L~~c~~L~~~lp~---~l~~L~~L~L~~c~~L---~~~l~~l~~L~ 865 (1113)
........+.... ....+. ..++|+.|++++| .+.+..|. .+++|+.|++++|..- ...+..+++|+
T Consensus 239 ~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 317 (844)
T 3j0a_A 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHG-FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317 (844)
T ss_dssp CSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTC-CCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCC
T ss_pred ccccccccccccccCCCChhhhhccccCCccEEECCCC-cccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCC
Confidence 2110000000000 000111 1367888888877 45533333 5677888888877422 22455677888
Q ss_pred EEEEeccCCCCcccCCCccccccccccCCCCCCcccccccCCCCC--cCcccCCCCCCceEEEcccCCCcccccccCCCC
Q 046764 866 ELKLGGCKKGGLQKGQPIIGRRIHYGCADTSSSLRVCLQCCNSLT--NNARVQLPLSLKDLSIAFCDNLRTLVEEEGIPK 943 (1113)
Q Consensus 866 ~L~L~~~~~~~~~~~~~l~~l~l~~~~~~~l~~L~~L~~~~N~L~--~~~~l~~l~~L~~L~Ls~c~~L~~l~~~~~lp~ 943 (1113)
+|++++|...... ...+..+++|+.|++..|.+. .+..+..+++|+.|++++|. ++.+
T Consensus 318 ~L~Ls~N~l~~~~-----------~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i-------- 377 (844)
T 3j0a_A 318 VLNLSYNLLGELY-----------SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA-LTTI-------- 377 (844)
T ss_dssp EEEEESCCCSCCC-----------SCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC-SCCC--------
T ss_pred EEECCCCCCCccC-----------HHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC-CCcc--------
Confidence 8888888765532 246677777888877777777 44456777888888887775 4433
Q ss_pred CcccCCCCccEEEeecCCCCcccCCCCCcCCccCeEEEccccccccc---cccCCCCC----------------------
Q 046764 944 GSRKYSSHLECLHILSCPSPTSIFSENELPATLQRLEVNSCSKLALL---TLSGNLPQ---------------------- 998 (1113)
Q Consensus 944 ~l~~~l~~L~~L~L~~c~~L~~ll~~~~l~~sL~~L~i~~c~~L~~l---~l~~~lp~---------------------- 998 (1113)
..+++|+.|+++++.. +. ++.. ..+++.|+++++. ++.+ ....++|.
T Consensus 378 ---~~~~~L~~L~l~~N~l-~~-l~~~--~~~l~~L~ls~N~-l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 449 (844)
T 3j0a_A 378 ---HFIPSIPDIFLSGNKL-VT-LPKI--NLTANLIHLSENR-LENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE 449 (844)
T ss_dssp ---SSCCSCSEEEEESCCC-CC-CCCC--CTTCCEEECCSCC-CCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCS
T ss_pred ---cCCCCcchhccCCCCc-cc-cccc--ccccceeecccCc-cccCchhhhhhcCCccceeeCCCCccccccccccccc
Confidence 1356667777766532 22 2221 1234444443321 1110 00112222
Q ss_pred --CCeEEEEecCCCccccC------C---CCCCccEEEEeecCCCCcccccCCCCCCcCeeee-ccccccccCCCCCCCC
Q 046764 999 --GPKYLELTSCSKWESIA------D---NNTSLQVITVFRCKNLKTLPDGLHKLNNLQAFTI-CKNLVSFPKGGLPSTQ 1066 (1113)
Q Consensus 999 --~L~~L~L~~c~~L~~lp------~---~l~sL~~L~Ls~c~~l~~lP~~l~~L~sL~~L~L-cn~L~slp~~~~~~~s 1066 (1113)
.|+.|+++++ .+..++ . .+++|+.|++++|......|..+..+++|+.|+| .|++..+|...++ ++
T Consensus 450 ~~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~ 527 (844)
T 3j0a_A 450 NPSLEQLFLGEN-MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-AN 527 (844)
T ss_dssp CTTCCBCEEESC-CCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SC
T ss_pred CCccccccCCCC-ccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-cc
Confidence 1555555554 222111 1 1456666666665332222344566666666666 6666666655555 46
Q ss_pred cCcEEEeCCCCCccCCCCCCCCCcCcccccc
Q 046764 1067 LRDPDITGCQKLEALPDGDLSSTFKTGKSSK 1097 (1113)
Q Consensus 1067 L~~L~l~~C~~L~~l~~~~l~~sL~~L~~~~ 1097 (1113)
|+.|++++ ++++.++...++ .++.+++.+
T Consensus 528 L~~L~Ls~-N~l~~~~~~~~~-~L~~l~l~~ 556 (844)
T 3j0a_A 528 LEILDISR-NQLLAPNPDVFV-SLSVLDITH 556 (844)
T ss_dssp CCEEEEEE-ECCCCCCSCCCS-SCCEEEEEE
T ss_pred ccEEECCC-CcCCCCChhHhC-CcCEEEecC
Confidence 66666665 344444444333 355555554
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=1.1e-25 Score=278.59 Aligned_cols=439 Identities=17% Similarity=0.109 Sum_probs=299.7
Q ss_pred ccccEEecCCCCCcccC-hhhhccccccEEecccccccccc-cccccCCCcceEEEcCCceecccccccccccc-ccccc
Q 046764 609 KHLRHLDLSETDIQILP-ESVNTLYNLRMLMLQKCNQLEKM-CSDMGNLLKLHHLDNFDFCCWKDIDSALQELK-LLHLH 685 (1113)
Q Consensus 609 ~~Lr~L~Ls~~~i~~LP-~~i~~L~~L~~LdL~~c~~l~~L-P~~i~~L~~L~~L~L~~~~i~~~~~~~l~~L~-L~~L~ 685 (1113)
.+|++|+|++|.++.+| ..|+++++|++|++++| .+..+ |..|+++++|++|++++|.+....|..+..+. |++|.
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 78999999999999885 48999999999999996 45555 67789999999999999988777788888888 77765
Q ss_pred cceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCCCCCcceEEEeccCccc----ccc
Q 046764 686 GALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGETL----RFE 761 (1113)
Q Consensus 686 g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~L~~~~~~~----~l~ 761 (1113)
+.-+.+.... ...++++++|+.|+++.|...+. ..+..+..+++|+.|+++++.... .+.
T Consensus 111 --L~~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~~--------~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 174 (606)
T 3vq2_A 111 --AVETKLASLE------SFPIGQLITLKKLNVAHNFIHSC--------KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174 (606)
T ss_dssp --CTTSCCCCSS------SSCCTTCTTCCEEECCSSCCCCC--------CCCGGGGTCTTCCEEECCSSCCCEECTTTTH
T ss_pred --ccCCcccccc------ccccCCCCCCCEEeCCCCcccce--------echHhHhhcCCCCEEEccCCcceecChhhhh
Confidence 3323332221 22488999999999998863321 134567788999999999875443 222
Q ss_pred Ccccccc---cccCCCcccceEecCCCCCCCCCcceeeccccCc------------------------------------
Q 046764 762 NMQERED---WIPYSSSQEVEFYGNGCLIPFPSLETLRFENMQE------------------------------------ 802 (1113)
Q Consensus 762 ~L~~L~~---~Lpl~~l~~~~~~g~~~l~~~~~L~~L~L~~~~~------------------------------------ 802 (1113)
++..+.. .+-+..- ...... .......+|+.|+++++..
T Consensus 175 ~l~~L~~~l~~L~l~~n-~l~~~~-~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~ 252 (606)
T 3vq2_A 175 FLRENPQVNLSLDMSLN-PIDFIQ-DQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEP 252 (606)
T ss_dssp HHHHCTTCCCEEECTTC-CCCEEC-TTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCG
T ss_pred hhhccccccceeeccCC-CcceeC-cccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccCh
Confidence 2222210 0000000 000000 1111122455555544321
Q ss_pred ---------------------CcccccCCCCcccccCCCccEEEEecCcCcccccCC--CCCCccEEEEecccC--cccc
Q 046764 803 ---------------------REDWIPYSSSQEVEVFPNLRDLFLLRCSKLLGTLPK--HLPSLQKLVIQRCEK--LLVD 857 (1113)
Q Consensus 803 ---------------------l~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~lp~--~l~~L~~L~L~~c~~--L~~~ 857 (1113)
+.... + ....+++|+.|+++++ .+. .+|. .+++|++|++++|.. ++ .
T Consensus 253 ~~~~~l~~l~l~~l~l~~~~~~~~~~----~-~~~~l~~L~~L~l~~~-~~~-~l~~l~~~~~L~~L~l~~n~l~~lp-~ 324 (606)
T 3vq2_A 253 SIMEGLCDVTIDEFRLTYTNDFSDDI----V-KFHCLANVSAMSLAGV-SIK-YLEDVPKHFKWQSLSIIRCQLKQFP-T 324 (606)
T ss_dssp GGGTTGGGSEEEEEEECCCTTCCGGG----G-SCGGGTTCSEEEEESC-CCC-CCCCCCTTCCCSEEEEESCCCSSCC-C
T ss_pred HHhhhhhhccHhheeccccccccccc----c-ccccCCCCCEEEecCc-cch-hhhhccccccCCEEEcccccCcccc-c
Confidence 11111 1 1455677888888877 444 4552 456788888888743 22 2
Q ss_pred CCCCCcccEEEEeccCCCCcccCCCccccccccccCCCCCCcccccccCCCCC-c---CcccCCCCCCceEEEcccCCCc
Q 046764 858 LPSLPSLNELKLGGCKKGGLQKGQPIIGRRIHYGCADTSSSLRVCLQCCNSLT-N---NARVQLPLSLKDLSIAFCDNLR 933 (1113)
Q Consensus 858 l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~~l~~L~~L~~~~N~L~-~---~~~l~~l~~L~~L~Ls~c~~L~ 933 (1113)
+ .+++|++|++++|..... ..+..+++|+.|++..|.+. . +..+..+++|+.|++++|. +.
T Consensus 325 ~-~l~~L~~L~l~~n~~~~~-------------~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~ 389 (606)
T 3vq2_A 325 L-DLPFLKSLTLTMNKGSIS-------------FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AI 389 (606)
T ss_dssp C-CCSSCCEEEEESCSSCEE-------------CCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EE
T ss_pred C-CCCccceeeccCCcCccc-------------hhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cc
Confidence 3 677888888888854431 25668899999999988887 2 5677889999999999987 55
Q ss_pred ccccccCCCCCcccCCCCccEEEeecCCCCcccCCC---CCcCCccCeEEEccccccccccc-cCCCCCCCeEEEEecCC
Q 046764 934 TLVEEEGIPKGSRKYSSHLECLHILSCPSPTSIFSE---NELPATLQRLEVNSCSKLALLTL-SGNLPQGPKYLELTSCS 1009 (1113)
Q Consensus 934 ~l~~~~~lp~~l~~~l~~L~~L~L~~c~~L~~ll~~---~~l~~sL~~L~i~~c~~L~~l~l-~~~lp~~L~~L~L~~c~ 1009 (1113)
.+ + ..+ ..+++|++|++++|..... .+. ..+ ++|+.|++++|.-.....- -.++++ |+.|++++|.
T Consensus 390 ~~-~-----~~~-~~l~~L~~L~l~~n~l~~~-~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~ 459 (606)
T 3vq2_A 390 IM-S-----ANF-MGLEELQHLDFQHSTLKRV-TEFSAFLSL-EKLLYLDISYTNTKIDFDGIFLGLTS-LNTLKMAGNS 459 (606)
T ss_dssp EE-C-----CCC-TTCTTCCEEECTTSEEEST-TTTTTTTTC-TTCCEEECTTSCCEECCTTTTTTCTT-CCEEECTTCE
T ss_pred cc-h-----hhc-cCCCCCCeeECCCCccCCc-cChhhhhcc-ccCCEEECcCCCCCccchhhhcCCCC-CCEEECCCCc
Confidence 54 3 233 3789999999998754333 331 233 4899999999874443221 234566 9999999974
Q ss_pred Cccc-cCCC---CCCccEEEEeecCCCCcccccCCCCCCcCeeee-ccccccc-cCCCCCCCCcCcEEEeCCCCCccCCC
Q 046764 1010 KWES-IADN---NTSLQVITVFRCKNLKTLPDGLHKLNNLQAFTI-CKNLVSF-PKGGLPSTQLRDPDITGCQKLEALPD 1083 (1113)
Q Consensus 1010 ~L~~-lp~~---l~sL~~L~Ls~c~~l~~lP~~l~~L~sL~~L~L-cn~L~sl-p~~~~~~~sL~~L~l~~C~~L~~l~~ 1083 (1113)
-... +|.. +++|++|++++|...+..|..+..+++|++|++ .|++..+ |.....+++|+.|++++| +++.+|.
T Consensus 460 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~ 538 (606)
T 3vq2_A 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN-RIETSKG 538 (606)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS-CCCCEES
T ss_pred CCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC-cCcccCH
Confidence 4332 4554 899999999998655555788999999999999 8888876 545556789999999986 5888887
Q ss_pred C--CCCCCcCccccccccC
Q 046764 1084 G--DLSSTFKTGKSSKCGI 1100 (1113)
Q Consensus 1084 ~--~l~~sL~~L~~~~c~~ 1100 (1113)
. .++..|+.+++++++.
T Consensus 539 ~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 539 ILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp CGGGSCTTCCEEECCSCCC
T ss_pred hHhhhcccCcEEEccCCCc
Confidence 4 4555789999988643
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=4.7e-25 Score=276.80 Aligned_cols=479 Identities=16% Similarity=0.142 Sum_probs=246.1
Q ss_pred cCCCCCeeEEccCCcC-------CCCCCccccEEecCCCCCcccCh-hhhccccccEEeccccccccccc-ccccCCCcc
Q 046764 588 FFEFENLQTFLPTTVS-------HGGDLKHLRHLDLSETDIQILPE-SVNTLYNLRMLMLQKCNQLEKMC-SDMGNLLKL 658 (1113)
Q Consensus 588 ~~~l~~Lr~L~~~~~~-------~i~~L~~Lr~L~Ls~~~i~~LP~-~i~~L~~L~~LdL~~c~~l~~LP-~~i~~L~~L 658 (1113)
+.++++|++|.+.++. .|+++++|++|+|++|.++.+|. .|+++++|++|++++| .+..+| ..++++++|
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L 123 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNL 123 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTC
T ss_pred HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCC-ccCccChhHccccCCC
Confidence 5566677777666543 35566777777777777777765 4777777777777764 344444 456777777
Q ss_pred eEEEcCCceecccccccccccc-ccccccceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHh--
Q 046764 659 HHLDNFDFCCWKDIDSALQELK-LLHLHGALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETH-- 735 (1113)
Q Consensus 659 ~~L~L~~~~i~~~~~~~l~~L~-L~~L~g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~-- 735 (1113)
++|++++|.+....+..+..+. |++|. +.-+.+.... .. ......+++|+.|++++|...+..........
T Consensus 124 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~--L~~n~l~~~~---~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 197 (680)
T 1ziw_A 124 ITLDLSHNGLSSTKLGTQVQLENLQELL--LSNNKIQALK---SE-ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRL 197 (680)
T ss_dssp CEEECCSSCCSCCCCCSSSCCTTCCEEE--CCSSCCCCBC---HH-HHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEE
T ss_pred CEEECCCCcccccCchhhcccccCCEEE--ccCCcccccC---HH-HhhccccccccEEECCCCcccccChhhhhhhhhh
Confidence 7777777766555555555555 54443 2212121111 00 00122345677777766543221111000000
Q ss_pred -----------------hhccCCCCCCcceEEEeccCccc----ccc-----CcccccccccCCCcccceEecCCCCCCC
Q 046764 736 -----------------VLDMLKPHQNLERFCISGYGETL----RFE-----NMQEREDWIPYSSSQEVEFYGNGCLIPF 789 (1113)
Q Consensus 736 -----------------~l~~L~~~~~L~~L~L~~~~~~~----~l~-----~L~~L~~~Lpl~~l~~~~~~g~~~l~~~ 789 (1113)
....+ ..++|+.|+++++.... .+. +|+.|. +..- .........+..+
T Consensus 198 ~~L~l~~~~l~~~~~~~~~~~l-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~----Ls~n-~l~~~~~~~~~~l 271 (680)
T 1ziw_A 198 FGLFLNNVQLGPSLTEKLCLEL-ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD----LSYN-NLNVVGNDSFAWL 271 (680)
T ss_dssp CEEECTTCCCHHHHHHHHHHHH-TTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEE----CTTS-CCCEECTTTTTTC
T ss_pred hhhhccccccChhhHHHHHHHh-hhccccEEEccCCcccccChhHhhccCcCCCCEEE----CCCC-CcCccCcccccCc
Confidence 00000 12445555555443221 111 122221 0000 0000001223444
Q ss_pred CCcceeeccccCcCcccccCCCCcccccCCCccEEEEecCcCccc-----ccC-------CCCCCccEEEEecccCc---
Q 046764 790 PSLETLRFENMQEREDWIPYSSSQEVEVFPNLRDLFLLRCSKLLG-----TLP-------KHLPSLQKLVIQRCEKL--- 854 (1113)
Q Consensus 790 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~-----~lp-------~~l~~L~~L~L~~c~~L--- 854 (1113)
++|+.|+++++.-.. .. +..+..+++|+.|+++++. ..+ .+| ..+++|++|++++|...
T Consensus 272 ~~L~~L~L~~n~l~~-~~----~~~~~~l~~L~~L~L~~~~-~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~ 345 (680)
T 1ziw_A 272 PQLEYFFLEYNNIQH-LF----SHSLHGLFNVRYLNLKRSF-TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK 345 (680)
T ss_dssp TTCCEEECCSCCBSE-EC----TTTTTTCTTCCEEECTTCB-CCC------CCEECTTTTTTCTTCCEEECCSCCBCCCC
T ss_pred ccccEeeCCCCccCc-cC----hhhhcCCCCccEEeccchh-hhcccccccccccChhhcccCCCCCEEECCCCccCCCC
Confidence 555555555432111 11 1123344444444444321 000 111 12344444444444211
Q ss_pred cccCCCCCcccEEEEeccCCCCc-ccC--------CCccccc--------cccccCCCCCCcccccccCCCCC---cCcc
Q 046764 855 LVDLPSLPSLNELKLGGCKKGGL-QKG--------QPIIGRR--------IHYGCADTSSSLRVCLQCCNSLT---NNAR 914 (1113)
Q Consensus 855 ~~~l~~l~~L~~L~L~~~~~~~~-~~~--------~~l~~l~--------l~~~~~~~l~~L~~L~~~~N~L~---~~~~ 914 (1113)
...+..+++|++|++++|..... .+. ..+..+. +....+..+++|+.|++..|.+. ....
T Consensus 346 ~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 425 (680)
T 1ziw_A 346 SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425 (680)
T ss_dssp TTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGG
T ss_pred hhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCccc
Confidence 11223344444444444431100 000 0111111 22345666777777777776665 2345
Q ss_pred cCCCCCCceEEEcccCCCcccccccCCCCCcccCCCCccEEEeecCCCC--cccCCC--CCcCCccCeEEEccccccccc
Q 046764 915 VQLPLSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHILSCPSP--TSIFSE--NELPATLQRLEVNSCSKLALL 990 (1113)
Q Consensus 915 l~~l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~c~~L--~~ll~~--~~l~~sL~~L~i~~c~~L~~l 990 (1113)
+..+++|+.|++++|. +..+ .+..+. .+++|+.|++++|..- .. .|. ..+ .+|+.|+++++. ++.+
T Consensus 426 ~~~l~~L~~L~Ls~n~-l~~~-----~~~~~~-~~~~L~~L~l~~n~l~~~~~-~p~~~~~l-~~L~~L~Ls~N~-l~~i 495 (680)
T 1ziw_A 426 WRGLENIFEIYLSYNK-YLQL-----TRNSFA-LVPSLQRLMLRRVALKNVDS-SPSPFQPL-RNLTILDLSNNN-IANI 495 (680)
T ss_dssp GTTCTTCCEEECCSCS-EEEC-----CTTTTT-TCTTCCEEECTTSCCBCTTC-SSCTTTTC-TTCCEEECCSSC-CCCC
T ss_pred ccCcccccEEecCCCC-ccee-----Chhhhh-cCcccccchhcccccccccc-CCcccccC-CCCCEEECCCCC-CCcC
Confidence 6677777777777775 3333 122232 6677777777765421 11 221 123 377888877753 3333
Q ss_pred cc--cCCCCCCCeEEEEecCCCccccC------------CCCCCccEEEEeecCCCCcccc-cCCCCCCcCeeee-cccc
Q 046764 991 TL--SGNLPQGPKYLELTSCSKWESIA------------DNNTSLQVITVFRCKNLKTLPD-GLHKLNNLQAFTI-CKNL 1054 (1113)
Q Consensus 991 ~l--~~~lp~~L~~L~L~~c~~L~~lp------------~~l~sL~~L~Ls~c~~l~~lP~-~l~~L~sL~~L~L-cn~L 1054 (1113)
.. -..++. |+.|+++++ .++.++ ..+++|+.|++++| .+..+|. .+.++++|+.|++ .|++
T Consensus 496 ~~~~~~~l~~-L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l 572 (680)
T 1ziw_A 496 NDDMLEGLEK-LEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDLGLNNL 572 (680)
T ss_dssp CTTTTTTCTT-CCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred Chhhhccccc-cCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHHcccccCcceeECCCCCC
Confidence 21 124455 999999986 455442 12789999999986 5678876 5789999999999 9999
Q ss_pred ccccCCCC-CCCCcCcEEEeCCCCCccCCCCCCC---CCcCcccccccc
Q 046764 1055 VSFPKGGL-PSTQLRDPDITGCQKLEALPDGDLS---STFKTGKSSKCG 1099 (1113)
Q Consensus 1055 ~slp~~~~-~~~sL~~L~l~~C~~L~~l~~~~l~---~sL~~L~~~~c~ 1099 (1113)
+.+|.+.+ .+++|+.|++++| +++.++...+. ..|+.+++.+++
T Consensus 573 ~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 573 NTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred CcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCC
Confidence 99988764 5679999999885 78877764332 467888887753
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=2.4e-25 Score=275.60 Aligned_cols=445 Identities=17% Similarity=0.163 Sum_probs=265.3
Q ss_pred ccccEEecCCCCCccc-ChhhhccccccEEecccccccccccccccCCCcceEEEcCCceecccccccccccc-cccccc
Q 046764 609 KHLRHLDLSETDIQIL-PESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNFDFCCWKDIDSALQELK-LLHLHG 686 (1113)
Q Consensus 609 ~~Lr~L~Ls~~~i~~L-P~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~~~~i~~~~~~~l~~L~-L~~L~g 686 (1113)
.++++|+|++|.|+.+ |..|+++++|++|+|++|......|..|+++++|++|++++|.+....|..+..+. |++|.
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~- 111 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF- 111 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE-
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee-
Confidence 4799999999999988 77999999999999999755555588899999999999999988777777888887 77665
Q ss_pred ceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCCCCCcceEEEeccCccc-------c
Q 046764 687 ALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGETL-------R 759 (1113)
Q Consensus 687 ~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~L~~~~~~~-------~ 759 (1113)
+.-+.+.. .....+.++++|+.|++++|...+. ....+..+++|+.|+++++.... .
T Consensus 112 -L~~n~i~~------l~~~~~~~l~~L~~L~L~~n~l~~~---------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 175 (606)
T 3t6q_A 112 -FIQTGISS------IDFIPLHNQKTLESLYLGSNHISSI---------KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS 175 (606)
T ss_dssp -CTTSCCSC------GGGSCCTTCTTCCEEECCSSCCCCC---------CCCTTCCCTTCCEEECCSSCCCEECHHHHHT
T ss_pred -ccccCccc------CCcchhccCCcccEEECCCCccccc---------CcccccCCcccCEEEcccCcccccChhhhhh
Confidence 32222222 2233578899999999988864321 11223347788888888765433 2
Q ss_pred ccCcc--ccc------cccc-----CCCcccceEecC---------------------------------CCCCCC--CC
Q 046764 760 FENMQ--ERE------DWIP-----YSSSQEVEFYGN---------------------------------GCLIPF--PS 791 (1113)
Q Consensus 760 l~~L~--~L~------~~Lp-----l~~l~~~~~~g~---------------------------------~~l~~~--~~ 791 (1113)
+.+++ .+. ..++ ...+....+.++ ..+..+ .+
T Consensus 176 l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~ 255 (606)
T 3t6q_A 176 LQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS 255 (606)
T ss_dssp TTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSE
T ss_pred hcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCc
Confidence 33333 221 0000 000000000000 000000 03
Q ss_pred cceeeccccCcCcccccCCCCcccccCCCccEEEEecCcCcccccCC---CCCCccEEEEecccCc---cccCCCCCccc
Q 046764 792 LETLRFENMQEREDWIPYSSSQEVEVFPNLRDLFLLRCSKLLGTLPK---HLPSLQKLVIQRCEKL---LVDLPSLPSLN 865 (1113)
Q Consensus 792 L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~lp~---~l~~L~~L~L~~c~~L---~~~l~~l~~L~ 865 (1113)
|+.|+++++. +.... +..+..+++|++|++++| .++ .+|. .+++|++|++++|... ...+..+++|+
T Consensus 256 L~~L~l~~n~-l~~~~----~~~~~~l~~L~~L~l~~n-~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 328 (606)
T 3t6q_A 256 VESINLQKHY-FFNIS----SNTFHCFSGLQELDLTAT-HLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLT 328 (606)
T ss_dssp EEEEECTTCC-CSSCC----TTTTTTCTTCSEEECTTS-CCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCS
T ss_pred eeEEEeecCc-cCccC----HHHhccccCCCEEeccCC-ccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCC
Confidence 4455554432 11111 223456777777777777 555 5554 4567777777776422 22445577777
Q ss_pred EEEEeccCCCCcccCCCccccccccccCCCCCCcccccccCCCCC--c--CcccCCCCCCceEEEcccCCCcccccccCC
Q 046764 866 ELKLGGCKKGGLQKGQPIIGRRIHYGCADTSSSLRVCLQCCNSLT--N--NARVQLPLSLKDLSIAFCDNLRTLVEEEGI 941 (1113)
Q Consensus 866 ~L~L~~~~~~~~~~~~~l~~l~l~~~~~~~l~~L~~L~~~~N~L~--~--~~~l~~l~~L~~L~Ls~c~~L~~l~~~~~l 941 (1113)
+|++++|...... +...+..+++|++|++..|.+. . +..+..+++|+.|++++|. +..+ .
T Consensus 329 ~L~l~~n~~~~~~----------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-----~ 392 (606)
T 3t6q_A 329 HLSIKGNTKRLEL----------GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSL-----K 392 (606)
T ss_dssp EEECCSCSSCCBC----------CSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEE-----C
T ss_pred EEECCCCCccccc----------chhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcC-----C
Confidence 7777777655322 2345667777888877777776 2 4567777888888887775 3333 2
Q ss_pred CCCcccCCCCccEEEeecCCCCcccCCC---CCcCCccCeEEEcccccccccc-ccCCCCCCCeEEEEecCCCccc-cCC
Q 046764 942 PKGSRKYSSHLECLHILSCPSPTSIFSE---NELPATLQRLEVNSCSKLALLT-LSGNLPQGPKYLELTSCSKWES-IAD 1016 (1113)
Q Consensus 942 p~~l~~~l~~L~~L~L~~c~~L~~ll~~---~~l~~sL~~L~i~~c~~L~~l~-l~~~lp~~L~~L~L~~c~~L~~-lp~ 1016 (1113)
|..+. .+++|++|++++|..... .+. ..+ ++|+.|++++|.--.... .-+.++. |+.|++++|.--.. ++.
T Consensus 393 ~~~~~-~l~~L~~L~l~~n~l~~~-~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~ 468 (606)
T 3t6q_A 393 TEAFK-ECPQLELLDLAFTRLKVK-DAQSPFQNL-HLLKVLNLSHSLLDISSEQLFDGLPA-LQHLNLQGNHFPKGNIQK 468 (606)
T ss_dssp TTTTT-TCTTCSEEECTTCCEECC-TTCCTTTTC-TTCCEEECTTCCCBTTCTTTTTTCTT-CCEEECTTCBCGGGEECS
T ss_pred HHHhc-CCccCCeEECCCCcCCCc-ccchhhhCc-ccCCEEECCCCccCCcCHHHHhCCCC-CCEEECCCCCCCcccccc
Confidence 22232 677788888777653222 221 223 367777777764322111 1124555 78888877643221 221
Q ss_pred --C---CCCccEEEEeecCCCCcccccCCCCCCcCeeee-ccccccccC-CCCCCCCcCcEEEeCCCCCccCCCCCCC--
Q 046764 1017 --N---NTSLQVITVFRCKNLKTLPDGLHKLNNLQAFTI-CKNLVSFPK-GGLPSTQLRDPDITGCQKLEALPDGDLS-- 1087 (1113)
Q Consensus 1017 --~---l~sL~~L~Ls~c~~l~~lP~~l~~L~sL~~L~L-cn~L~slp~-~~~~~~sL~~L~l~~C~~L~~l~~~~l~-- 1087 (1113)
. +++|++|++++|......|..+..+++|+.|++ .|++..++. ....+++| .|++++| +++.++...+.
T Consensus 469 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l 546 (606)
T 3t6q_A 469 TNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN-HISIILPSLLPIL 546 (606)
T ss_dssp SCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS-CCCCCCGGGHHHH
T ss_pred chhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC-cccccCHhhcccC
Confidence 1 677888888877544444677777888888888 666665443 33345567 7777764 44444432222
Q ss_pred CCcCcccccccc
Q 046764 1088 STFKTGKSSKCG 1099 (1113)
Q Consensus 1088 ~sL~~L~~~~c~ 1099 (1113)
..|+.+++++++
T Consensus 547 ~~L~~L~l~~N~ 558 (606)
T 3t6q_A 547 SQQRTINLRQNP 558 (606)
T ss_dssp HTSSEEECTTCC
T ss_pred CCCCEEeCCCCC
Confidence 246677776654
No 10
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=1.6e-25 Score=273.78 Aligned_cols=441 Identities=17% Similarity=0.158 Sum_probs=265.2
Q ss_pred CCeeEEccCCcC-------CCCCCccccEEecCCCCCcccC-hhhhccccccEEeccccccccccccc-ccCCCcceEEE
Q 046764 592 ENLQTFLPTTVS-------HGGDLKHLRHLDLSETDIQILP-ESVNTLYNLRMLMLQKCNQLEKMCSD-MGNLLKLHHLD 662 (1113)
Q Consensus 592 ~~Lr~L~~~~~~-------~i~~L~~Lr~L~Ls~~~i~~LP-~~i~~L~~L~~LdL~~c~~l~~LP~~-i~~L~~L~~L~ 662 (1113)
+++++|.+.++. .|+++++|++|+|++|+++.+| ..|+++++|++|+|++| .+..+|.. ++++++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEE
Confidence 577777777654 5778888888888888888764 67888888888888875 45555544 78888888888
Q ss_pred cCCceecc-cccccccccc-ccccccceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccC
Q 046764 663 NFDFCCWK-DIDSALQELK-LLHLHGALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDML 740 (1113)
Q Consensus 663 L~~~~i~~-~~~~~l~~L~-L~~L~g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L 740 (1113)
+++|.+.. ..+..+..+. |+.|. +.-+. . ........+.++++|+.|++++|...+ ..+..+
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~--L~~n~--~---~~~~~~~~~~~l~~L~~L~L~~n~l~~---------~~~~~l 168 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLR--IGNVE--T---FSEIRRIDFAGLTSLNELEIKALSLRN---------YQSQSL 168 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEE--EEESS--S---CCEECTTTTTTCCEEEEEEEEETTCCE---------ECTTTT
T ss_pred CCCCcccccchhhhhhccCCccEEE--CCCCc--c---ccccCHhhhhcccccCeeeccCCcccc---------cChhhh
Confidence 88886654 2345566666 55554 22221 0 111112346777888888887775321 123455
Q ss_pred CCCCCcceEEEeccCccc-------cccCccccc-ccccCCCcccceEecCCCCCCCCCcceeeccccCcCcccccCCCC
Q 046764 741 KPHQNLERFCISGYGETL-------RFENMQERE-DWIPYSSSQEVEFYGNGCLIPFPSLETLRFENMQEREDWIPYSSS 812 (1113)
Q Consensus 741 ~~~~~L~~L~L~~~~~~~-------~l~~L~~L~-~~Lpl~~l~~~~~~g~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~ 812 (1113)
..+++|+.|+++++.... .+++|+.|. ..-.+.. ..+........+++|+.|++.++.-..... ....
T Consensus 169 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~ 244 (549)
T 2z81_A 169 KSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR---FQFSPLPVDEVSSPMKKLAFRGSVLTDESF-NELL 244 (549)
T ss_dssp TTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTT---CCCCCCSSCCCCCCCCEEEEESCEEEHHHH-HHHH
T ss_pred hccccCceEecccCcccccchhhHhhcccccEEEccCCcccc---ccccccchhhhhhcccceeccccccchhHH-HHHH
Confidence 666777777777654322 122222222 0000000 000000111234566666666542111000 0001
Q ss_pred cccccCCCccEEEEecCcCcccc---------cCCCCCCccEEEEecccCccc----c----CCCCCcccEEEEeccCCC
Q 046764 813 QEVEVFPNLRDLFLLRCSKLLGT---------LPKHLPSLQKLVIQRCEKLLV----D----LPSLPSLNELKLGGCKKG 875 (1113)
Q Consensus 813 ~~~~~~~~L~~L~L~~c~~L~~~---------lp~~l~~L~~L~L~~c~~L~~----~----l~~l~~L~~L~L~~~~~~ 875 (1113)
.....+++|+.|++++| .+.+. .+..+++|+.|.+.++..-.. . ....++|+.|++++|...
T Consensus 245 ~~~~~~~~L~~l~l~~~-~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~ 323 (549)
T 2z81_A 245 KLLRYILELSEVEFDDC-TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF 323 (549)
T ss_dssp GGGGGCTTCCEEEEESC-EEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC
T ss_pred HHhhhhccccccccccc-cccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc
Confidence 12245667777777776 33311 123566777777776631110 0 111457788888877654
Q ss_pred CcccCCCccccccccccCCCCCCcccccccCCCCCc-----CcccCCCCCCceEEEcccCCCcccccccCCCCCcccCCC
Q 046764 876 GLQKGQPIIGRRIHYGCADTSSSLRVCLQCCNSLTN-----NARVQLPLSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSS 950 (1113)
Q Consensus 876 ~~~~~~~l~~l~l~~~~~~~l~~L~~L~~~~N~L~~-----~~~l~~l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~ 950 (1113)
.. +...+..+++|+.|++.+|.+.. ...+..+++|+.|++++|. ++.+ +.. +..+ ..++
T Consensus 324 ~i-----------p~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~-~~~--~~~~-~~l~ 387 (549)
T 2z81_A 324 LV-----------PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSM-QKT--GEIL-LTLK 387 (549)
T ss_dssp CC-----------CHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCH-HHH--HHHG-GGCT
T ss_pred cC-----------CHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-cccc-ccc--hhhh-hcCC
Confidence 32 22333568888888888888872 2346778899999998885 5554 210 0012 3788
Q ss_pred CccEEEeecCCCCcccCCCC-CcCCccCeEEEccccccccccccCCCCCCCeEEEEecCCCccccCCCCCCccEEEEeec
Q 046764 951 HLECLHILSCPSPTSIFSEN-ELPATLQRLEVNSCSKLALLTLSGNLPQGPKYLELTSCSKWESIADNNTSLQVITVFRC 1029 (1113)
Q Consensus 951 ~L~~L~L~~c~~L~~ll~~~-~l~~sL~~L~i~~c~~L~~l~l~~~lp~~L~~L~L~~c~~L~~lp~~l~sL~~L~Ls~c 1029 (1113)
+|++|++++| .++. +|.. ...++|++|+++++. ++.+ .+.+|..|+.|++++| .++.++..+++|++|++++|
T Consensus 388 ~L~~L~Ls~N-~l~~-lp~~~~~~~~L~~L~Ls~N~-l~~l--~~~~~~~L~~L~Ls~N-~l~~~~~~l~~L~~L~Ls~N 461 (549)
T 2z81_A 388 NLTSLDISRN-TFHP-MPDSCQWPEKMRFLNLSSTG-IRVV--KTCIPQTLEVLDVSNN-NLDSFSLFLPRLQELYISRN 461 (549)
T ss_dssp TCCEEECTTC-CCCC-CCSCCCCCTTCCEEECTTSC-CSCC--CTTSCTTCSEEECCSS-CCSCCCCCCTTCCEEECCSS
T ss_pred CCCEEECCCC-CCcc-CChhhcccccccEEECCCCC-cccc--cchhcCCceEEECCCC-ChhhhcccCChhcEEECCCC
Confidence 8999999887 4445 4432 333578888888865 4432 2334555899999886 66767666889999999987
Q ss_pred CCCCcccccCCCCCCcCeeee-ccccccccCCC-CCCCCcCcEEEeCCCCC
Q 046764 1030 KNLKTLPDGLHKLNNLQAFTI-CKNLVSFPKGG-LPSTQLRDPDITGCQKL 1078 (1113)
Q Consensus 1030 ~~l~~lP~~l~~L~sL~~L~L-cn~L~slp~~~-~~~~sL~~L~l~~C~~L 1078 (1113)
.++.+|. ...+++|+.|++ .|++..+|.+. ..+++|+.|++++|+-.
T Consensus 462 -~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 462 -KLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp -CCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBC
T ss_pred -ccCcCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCcc
Confidence 5678876 457889999999 88888877653 35678999999887643
No 11
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.93 E-value=7e-25 Score=275.23 Aligned_cols=451 Identities=17% Similarity=0.097 Sum_probs=259.2
Q ss_pred cCCCCCeeEEccCCcC-------CCCCCccccEEecCCCCCcccC-hhhhccccccEEecccccccccccccccCCCcce
Q 046764 588 FFEFENLQTFLPTTVS-------HGGDLKHLRHLDLSETDIQILP-ESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLH 659 (1113)
Q Consensus 588 ~~~l~~Lr~L~~~~~~-------~i~~L~~Lr~L~Ls~~~i~~LP-~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~ 659 (1113)
+.++++||+|.+.++. .|+++++|++|+|++|.+..+| ..|+++++|++|++++|......|..++++++|+
T Consensus 69 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 148 (680)
T 1ziw_A 69 CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQ 148 (680)
T ss_dssp HHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCC
T ss_pred HhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCC
Confidence 4567888888877654 4778888888888888888775 6788888888888888654445566678888888
Q ss_pred EEEcCCceeccccccccccc--c-ccccccceeeccccCccC------------------hh----hHHHhhcCCCcccc
Q 046764 660 HLDNFDFCCWKDIDSALQEL--K-LLHLHGALEISKLENVRD------------------AS----EAGEAQLNGKKNLK 714 (1113)
Q Consensus 660 ~L~L~~~~i~~~~~~~l~~L--~-L~~L~g~L~i~~l~~~~~------------------~~----~~~~~~l~~l~~L~ 714 (1113)
+|++++|.+....+..+..+ . |+.|. +.-+.+..... .. ......+ ..++|+
T Consensus 149 ~L~L~~n~l~~~~~~~~~~~~~~~L~~L~--L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l-~~~~L~ 225 (680)
T 1ziw_A 149 ELLLSNNKIQALKSEELDIFANSSLKKLE--LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL-ANTSIR 225 (680)
T ss_dssp EEECCSSCCCCBCHHHHGGGTTCEESEEE--CTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHH-TTSCCC
T ss_pred EEEccCCcccccCHHHhhccccccccEEE--CCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHh-hhcccc
Confidence 88888886654444333221 2 22222 11111111000 00 0000001 124556
Q ss_pred eEEeeecCCCCCCCCchhhHhhhccCCCC--CCcceEEEeccCccc-------cccCccccc-------cccc-----CC
Q 046764 715 TLLLQRTSNNGDSREPEIETHVLDMLKPH--QNLERFCISGYGETL-------RFENMQERE-------DWIP-----YS 773 (1113)
Q Consensus 715 ~L~L~~~~~~~~~~~~~~~~~~l~~L~~~--~~L~~L~L~~~~~~~-------~l~~L~~L~-------~~Lp-----l~ 773 (1113)
.|++++|...+.. ...+..+ ++|+.|+++++.... .+++|+.|. +..| +.
T Consensus 226 ~L~L~~n~l~~~~---------~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 296 (680)
T 1ziw_A 226 NLSLSNSQLSTTS---------NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF 296 (680)
T ss_dssp EEECTTSCCCEEC---------TTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCT
T ss_pred EEEccCCcccccC---------hhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCC
Confidence 6665554321110 1111111 235555555443221 111222211 0000 00
Q ss_pred Cc----cc------------ceEecCCCCCCCCCcceeeccccCcCcccccCCCCcccccCCCccEEEEecCcC-ccccc
Q 046764 774 SS----QE------------VEFYGNGCLIPFPSLETLRFENMQEREDWIPYSSSQEVEVFPNLRDLFLLRCSK-LLGTL 836 (1113)
Q Consensus 774 ~l----~~------------~~~~g~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~-L~~~l 836 (1113)
.+ +. ........+..+++|+.|+++++.-. ... +..+..+++|++|++++|.. +. .+
T Consensus 297 ~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~-~~~----~~~~~~l~~L~~L~Ls~n~~~~~-~l 370 (680)
T 1ziw_A 297 NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP-GIK----SNMFTGLINLKYLSLSNSFTSLR-TL 370 (680)
T ss_dssp TCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBC-CCC----TTTTTTCTTCCEEECTTCBSCCC-EE
T ss_pred CccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccC-CCC----hhHhccccCCcEEECCCCchhhh-hc
Confidence 00 00 00000012333445555555443211 111 12234455555555555421 11 12
Q ss_pred CC------CCCCccEEEEecccCc---cccCCCCCcccEEEEeccCCCCcccCCCccccccccccCCCCCCcccccccCC
Q 046764 837 PK------HLPSLQKLVIQRCEKL---LVDLPSLPSLNELKLGGCKKGGLQKGQPIIGRRIHYGCADTSSSLRVCLQCCN 907 (1113)
Q Consensus 837 p~------~l~~L~~L~L~~c~~L---~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~~l~~L~~L~~~~N 907 (1113)
+. ..++|+.|++++|... ...+..+++|+.|++++|..... ++...+..+++|++|++..|
T Consensus 371 ~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----------~~~~~~~~l~~L~~L~Ls~n 440 (680)
T 1ziw_A 371 TNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE----------LTGQEWRGLENIFEIYLSYN 440 (680)
T ss_dssp CTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEE----------CCSGGGTTCTTCCEEECCSC
T ss_pred chhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccc----------cCcccccCcccccEEecCCC
Confidence 21 1135555555555321 12334466666666666665432 12356788999999999998
Q ss_pred CCC--cCcccCCCCCCceEEEcccCCCcccccccCCCCCcccCCCCccEEEeecCCCCcccCCCC---CcCCccCeEEEc
Q 046764 908 SLT--NNARVQLPLSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHILSCPSPTSIFSEN---ELPATLQRLEVN 982 (1113)
Q Consensus 908 ~L~--~~~~l~~l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~c~~L~~ll~~~---~l~~sL~~L~i~ 982 (1113)
.+. .+..+..+++|+.|++++|. +..+ +.+|..+. .+++|+.|++++|. ++. ++.. ++ .+|+.|+++
T Consensus 441 ~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~---~~~p~~~~-~l~~L~~L~Ls~N~-l~~-i~~~~~~~l-~~L~~L~Ls 512 (680)
T 1ziw_A 441 KYLQLTRNSFALVPSLQRLMLRRVA-LKNV---DSSPSPFQ-PLRNLTILDLSNNN-IAN-INDDMLEGL-EKLEILDLQ 512 (680)
T ss_dssp SEEECCTTTTTTCTTCCEEECTTSC-CBCT---TCSSCTTT-TCTTCCEEECCSSC-CCC-CCTTTTTTC-TTCCEEECC
T ss_pred CcceeChhhhhcCcccccchhcccc-cccc---ccCCcccc-cCCCCCEEECCCCC-CCc-CChhhhccc-cccCEEeCC
Confidence 887 56778899999999999986 3322 23455554 89999999999875 444 3322 34 489999998
Q ss_pred cccccccccc----------cCCCCCCCeEEEEecCCCccccCCC----CCCccEEEEeecCCCCccccc-CCCCCCcCe
Q 046764 983 SCSKLALLTL----------SGNLPQGPKYLELTSCSKWESIADN----NTSLQVITVFRCKNLKTLPDG-LHKLNNLQA 1047 (1113)
Q Consensus 983 ~c~~L~~l~l----------~~~lp~~L~~L~L~~c~~L~~lp~~----l~sL~~L~Ls~c~~l~~lP~~-l~~L~sL~~ 1047 (1113)
++. ++.+.. -.+++. |+.|+++++ .++.+|.. +++|+.|++++| .++.+|.. +..+++|+.
T Consensus 513 ~N~-l~~~~~~~~~~~~~~~~~~l~~-L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~ 588 (680)
T 1ziw_A 513 HNN-LARLWKHANPGGPIYFLKGLSH-LHILNLESN-GFDEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKS 588 (680)
T ss_dssp SSC-CGGGGSTTSTTSCCCTTTTCTT-CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred CCC-ccccchhhccCCcchhhcCCCC-CCEEECCCC-CCCCCCHHHcccccCcceeECCCC-CCCcCCHhHhCCCCCCCE
Confidence 864 333311 134556 999999996 77788864 899999999986 57778665 689999999
Q ss_pred eee-ccccccccCCCC--CCCCcCcEEEeCCCCC
Q 046764 1048 FTI-CKNLVSFPKGGL--PSTQLRDPDITGCQKL 1078 (1113)
Q Consensus 1048 L~L-cn~L~slp~~~~--~~~sL~~L~l~~C~~L 1078 (1113)
|++ .|++..++...+ .+++|+.|++++||-.
T Consensus 589 L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 589 LNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp EECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred EECCCCcCCccChhHhcccccccCEEEccCCCcc
Confidence 999 899998887544 3569999999986543
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.93 E-value=3.2e-24 Score=275.14 Aligned_cols=443 Identities=20% Similarity=0.136 Sum_probs=289.6
Q ss_pred cccCCCCCeeEEccCCcC--------CCCCCccccEEecCCCCCccc-ChhhhccccccEEeccccccccccccc--ccC
Q 046764 586 EPFFEFENLQTFLPTTVS--------HGGDLKHLRHLDLSETDIQIL-PESVNTLYNLRMLMLQKCNQLEKMCSD--MGN 654 (1113)
Q Consensus 586 ~~~~~l~~Lr~L~~~~~~--------~i~~L~~Lr~L~Ls~~~i~~L-P~~i~~L~~L~~LdL~~c~~l~~LP~~--i~~ 654 (1113)
..+.++++||+|.+.++. .|+++++|++|+|++|.+..+ |..|+++++|++|+|++|.....+|.. +++
T Consensus 42 ~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 121 (844)
T 3j0a_A 42 SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121 (844)
T ss_dssp SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSS
T ss_pred hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccc
Confidence 457789999999998873 689999999999999999977 889999999999999997554556665 899
Q ss_pred CCcceEEEcCCceeccccc-ccccccc-ccccccceeeccccCccChhhHHHhhcCCC--cccceEEeeecCCCCCCCCc
Q 046764 655 LLKLHHLDNFDFCCWKDID-SALQELK-LLHLHGALEISKLENVRDASEAGEAQLNGK--KNLKTLLLQRTSNNGDSREP 730 (1113)
Q Consensus 655 L~~L~~L~L~~~~i~~~~~-~~l~~L~-L~~L~g~L~i~~l~~~~~~~~~~~~~l~~l--~~L~~L~L~~~~~~~~~~~~ 730 (1113)
|++|++|++++|.+....+ ..+.+|. |+.|. +.-+.+.... ...+..+ ++|+.|+++.|...+..
T Consensus 122 L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~--Ls~N~i~~~~------~~~l~~l~~~~L~~L~L~~n~l~~~~--- 190 (844)
T 3j0a_A 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSID--FSSNQIFLVC------EHELEPLQGKTLSFFSLAANSLYSRV--- 190 (844)
T ss_dssp CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEE--EESSCCCCCC------SGGGHHHHHCSSCCCEECCSBSCCCC---
T ss_pred cCCCCEEECCCCcccccccchhHhhCCCCCEEE--CCCCcCCeeC------HHHcccccCCccceEECCCCcccccc---
Confidence 9999999999998765543 4677777 77665 3333333221 1123333 78999999888643321
Q ss_pred hhhHhhhccCCCCC------CcceEEEeccCccc----cc------cCccccc-c------cccCCCcccceEecCCCCC
Q 046764 731 EIETHVLDMLKPHQ------NLERFCISGYGETL----RF------ENMQERE-D------WIPYSSSQEVEFYGNGCLI 787 (1113)
Q Consensus 731 ~~~~~~l~~L~~~~------~L~~L~L~~~~~~~----~l------~~L~~L~-~------~Lpl~~l~~~~~~g~~~l~ 787 (1113)
...+..+. +|+.|+++++.... .+ ..+..+. . .+....+.+ .....+.
T Consensus 191 ------~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~---~~~~~f~ 261 (844)
T 3j0a_A 191 ------SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD---PDQNTFA 261 (844)
T ss_dssp ------CCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTT---GGGTTTT
T ss_pred ------ccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCC---CChhhhh
Confidence 11222222 48899998764322 01 1111111 0 000000000 0001122
Q ss_pred C--CCCcceeeccccCcCcccccCCCCcccccCCCccEEEEecCcCcccccCC---CCCCccEEEEecccC--c-cccCC
Q 046764 788 P--FPSLETLRFENMQEREDWIPYSSSQEVEVFPNLRDLFLLRCSKLLGTLPK---HLPSLQKLVIQRCEK--L-LVDLP 859 (1113)
Q Consensus 788 ~--~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~lp~---~l~~L~~L~L~~c~~--L-~~~l~ 859 (1113)
. .++|+.|+++++.-. ... +..+..+++|+.|++++| .+.+..|. .+++|+.|++++|.. + ...+.
T Consensus 262 ~l~~~~L~~L~Ls~n~l~-~~~----~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 335 (844)
T 3j0a_A 262 GLARSSVRHLDLSHGFVF-SLN----SRVFETLKDLKVLNLAYN-KINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY 335 (844)
T ss_dssp TTTTSCCCEEECTTCCCC-EEC----SCCSSSCCCCCEEEEESC-CCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCS
T ss_pred ccccCCccEEECCCCccc-ccC----hhhhhcCCCCCEEECCCC-cCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhc
Confidence 2 368899999876422 222 335567899999999998 66644443 568899999998842 2 33566
Q ss_pred CCCcccEEEEeccCCCCcccCCCccccccccccCCCCCCcccccccCCCCCcCcccCCCCCCceEEEcccCCCccccccc
Q 046764 860 SLPSLNELKLGGCKKGGLQKGQPIIGRRIHYGCADTSSSLRVCLQCCNSLTNNARVQLPLSLKDLSIAFCDNLRTLVEEE 939 (1113)
Q Consensus 860 ~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~~l~~L~~L~~~~N~L~~~~~l~~l~~L~~L~Ls~c~~L~~l~~~~ 939 (1113)
.+++|+.|++++|...... ...+..+++|+.|++.+|.++ .+..+++|+.|++++|. +..+ |..
T Consensus 336 ~l~~L~~L~L~~N~i~~~~-----------~~~~~~l~~L~~L~Ls~N~l~---~i~~~~~L~~L~l~~N~-l~~l-~~~ 399 (844)
T 3j0a_A 336 GLPKVAYIDLQKNHIAIIQ-----------DQTFKFLEKLQTLDLRDNALT---TIHFIPSIPDIFLSGNK-LVTL-PKI 399 (844)
T ss_dssp SCTTCCEEECCSCCCCCCC-----------SSCSCSCCCCCEEEEETCCSC---CCSSCCSCSEEEEESCC-CCCC-CCC
T ss_pred CCCCCCEEECCCCCCCccC-----------hhhhcCCCCCCEEECCCCCCC---cccCCCCcchhccCCCC-cccc-ccc
Confidence 7889999999999776533 346777888888877777776 22336777777777765 4444 221
Q ss_pred CC---------------CC-CcccCCCCccEEEeecCCCCcccCCCC--CcCCccCeEEEcccccccccc-------ccC
Q 046764 940 GI---------------PK-GSRKYSSHLECLHILSCPSPTSIFSEN--ELPATLQRLEVNSCSKLALLT-------LSG 994 (1113)
Q Consensus 940 ~l---------------p~-~l~~~l~~L~~L~L~~c~~L~~ll~~~--~l~~sL~~L~i~~c~~L~~l~-------l~~ 994 (1113)
.. +. .....+++|+.|++++|..-.. .+.. .-.++|+.|+++++. ++... .-.
T Consensus 400 ~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~~~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~ 477 (844)
T 3j0a_A 400 NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSC-SGDQTPSENPSLEQLFLGENM-LQLAWETELCWDVFE 477 (844)
T ss_dssp CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCC-CSSSSSCSCTTCCBCEEESCC-CSSSCCSCCCSSCSS
T ss_pred ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccc-ccccccccCCccccccCCCCc-cccccccccchhhhc
Confidence 10 00 0012678899999988753321 1111 112478888888764 22111 112
Q ss_pred CCCCCCeEEEEecCCCccccCCC----CCCccEEEEeecCCCCcccccCCCCCCcCeeee-ccccccccCCCCCCCCcCc
Q 046764 995 NLPQGPKYLELTSCSKWESIADN----NTSLQVITVFRCKNLKTLPDGLHKLNNLQAFTI-CKNLVSFPKGGLPSTQLRD 1069 (1113)
Q Consensus 995 ~lp~~L~~L~L~~c~~L~~lp~~----l~sL~~L~Ls~c~~l~~lP~~l~~L~sL~~L~L-cn~L~slp~~~~~~~sL~~ 1069 (1113)
+++. |+.|++++| .++.++.. +++|+.|++++| .+..+|..... ++|+.|++ .|++..++...++ +|+.
T Consensus 478 ~l~~-L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~~~~~~--~L~~ 551 (844)
T 3j0a_A 478 GLSH-LQVLYLNHN-YLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLP-ANLEILDISRNQLLAPNPDVFV--SLSV 551 (844)
T ss_dssp CBCC-EECCCCCHH-HHTTCCTTSSSSCCSCSEEEEESC-CCSSCCCCCCC-SCCCEEEEEEECCCCCCSCCCS--SCCE
T ss_pred Cccc-ccEEECCCC-cccccChhHccchhhhheeECCCC-CCCccChhhhh-ccccEEECCCCcCCCCChhHhC--CcCE
Confidence 3455 999999997 66676654 899999999997 56777654433 89999999 9999988776554 8999
Q ss_pred EEEeCCCCC
Q 046764 1070 PDITGCQKL 1078 (1113)
Q Consensus 1070 L~l~~C~~L 1078 (1113)
|+++++|-.
T Consensus 552 l~l~~Np~~ 560 (844)
T 3j0a_A 552 LDITHNKFI 560 (844)
T ss_dssp EEEEEECCC
T ss_pred EEecCCCcc
Confidence 999986544
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=3e-25 Score=275.38 Aligned_cols=265 Identities=12% Similarity=0.121 Sum_probs=152.0
Q ss_pred CCCCCCcceeeccccCcCcccccCCCCcccccCCCccEEEEecCcCcccccCC---CCCC-ccEEEEeccc--CccccCC
Q 046764 786 LIPFPSLETLRFENMQEREDWIPYSSSQEVEVFPNLRDLFLLRCSKLLGTLPK---HLPS-LQKLVIQRCE--KLLVDLP 859 (1113)
Q Consensus 786 l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~lp~---~l~~-L~~L~L~~c~--~L~~~l~ 859 (1113)
+..+++|+.|+++++.-... .+ .++.+++|+.|++++| .+. .+|. .+++ |+.|++++|. .++..+.
T Consensus 326 l~~l~~L~~L~L~~N~l~g~-----ip-~~~~l~~L~~L~L~~N-~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~ 397 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLEGK-----LP-AFGSEIKLASLNLAYN-QIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFD 397 (636)
T ss_dssp HTTCTTCCEEECCSCCCEEE-----CC-CCEEEEEESEEECCSS-EEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCC
T ss_pred hccCCCCCEEeCcCCcCccc-----hh-hhCCCCCCCEEECCCC-ccc-cccHhhhhhcccCcEEEccCCcCcccchhhh
Confidence 45567777777776532211 12 4456788888888887 566 6665 3455 7777777764 2222222
Q ss_pred C--CCcccEEEEeccCCCCcccCCCccccccccccCC-------CCCCcccccccCCCCC-c-CcccCCCCCCceEEEcc
Q 046764 860 S--LPSLNELKLGGCKKGGLQKGQPIIGRRIHYGCAD-------TSSSLRVCLQCCNSLT-N-NARVQLPLSLKDLSIAF 928 (1113)
Q Consensus 860 ~--l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~-------~l~~L~~L~~~~N~L~-~-~~~l~~l~~L~~L~Ls~ 928 (1113)
. +++|+.|++++|......+ ..+. .+++|+.|++.+|.++ . ...+..+++|+.|++++
T Consensus 398 ~~~l~~L~~L~Ls~N~l~~~~p-----------~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~ 466 (636)
T 4eco_A 398 AKSVSVMSAIDFSYNEIGSVDG-----------KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466 (636)
T ss_dssp TTCSSCEEEEECCSSCTTTTTT-----------CSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCS
T ss_pred hcccCccCEEECcCCcCCCcch-----------hhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCC
Confidence 2 3367777777776655332 1222 3345555555555554 1 12233345555555555
Q ss_pred cCCCcccccccCCCCCc--ccCCCCccEEEeecCCCCcccCCCCCcCCccCeEEEcccccccccccc---CCCCCCCeEE
Q 046764 929 CDNLRTLVEEEGIPKGS--RKYSSHLECLHILSCPSPTSIFSENELPATLQRLEVNSCSKLALLTLS---GNLPQGPKYL 1003 (1113)
Q Consensus 929 c~~L~~l~~~~~lp~~l--~~~l~~L~~L~L~~c~~L~~ll~~~~l~~sL~~L~i~~c~~L~~l~l~---~~lp~~L~~L 1003 (1113)
|. ++.+ |...+.... ..++++|+.|+ ++++. ++.++.. ..++. |+.|
T Consensus 467 N~-l~~i-~~~~~~~~~~~~~~l~~L~~L~------------------------Ls~N~-l~~lp~~~~~~~l~~-L~~L 518 (636)
T 4eco_A 467 NM-LTEI-PKNSLKDENENFKNTYLLTSID------------------------LRFNK-LTKLSDDFRATTLPY-LVGI 518 (636)
T ss_dssp SC-CSBC-CSSSSEETTEECTTGGGCCEEE------------------------CCSSC-CCBCCGGGSTTTCTT-CCEE
T ss_pred CC-CCCc-CHHHhccccccccccCCccEEE------------------------CcCCc-CCccChhhhhccCCC-cCEE
Confidence 43 3333 222110000 00112444444 44432 2222211 14455 8888
Q ss_pred EEecCCCccccCCC---CCCccEEEEe------ecCCCCcccccCCCCCCcCeeee-ccccccccCCCCCCCCcCcEEEe
Q 046764 1004 ELTSCSKWESIADN---NTSLQVITVF------RCKNLKTLPDGLHKLNNLQAFTI-CKNLVSFPKGGLPSTQLRDPDIT 1073 (1113)
Q Consensus 1004 ~L~~c~~L~~lp~~---l~sL~~L~Ls------~c~~l~~lP~~l~~L~sL~~L~L-cn~L~slp~~~~~~~sL~~L~l~ 1073 (1113)
++++| .++.+|.. +++|+.|+++ +|...+.+|..+..+++|++|++ .|++..+|.... ++|+.|+++
T Consensus 519 ~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls 595 (636)
T 4eco_A 519 DLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIK 595 (636)
T ss_dssp ECCSS-CCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--TTCCEEECC
T ss_pred ECCCC-CCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHh--CcCCEEECc
Confidence 88885 55557766 8999999995 45567788999999999999999 889999998754 599999999
Q ss_pred CCCCCccCCCCCC-CC---------CcCccccccccCC
Q 046764 1074 GCQKLEALPDGDL-SS---------TFKTGKSSKCGIF 1101 (1113)
Q Consensus 1074 ~C~~L~~l~~~~l-~~---------sL~~L~~~~c~~l 1101 (1113)
+|+- ..+..... |. ..+..++.+|+.+
T Consensus 596 ~N~l-~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L 632 (636)
T 4eco_A 596 DNPN-ISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDAL 632 (636)
T ss_dssp SCTT-CEEECTTTHHHHHTTCCEEECCTTSEEESCGGG
T ss_pred CCCC-ccccHHhcchhhhcccceeecCCccccCCCccc
Confidence 9753 34432111 11 1234567788765
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=2.2e-24 Score=264.75 Aligned_cols=239 Identities=18% Similarity=0.159 Sum_probs=164.4
Q ss_pred cccccCCCccEEEEecCcCcccccCC---CCCCccEEEEecccCccccCCCCCcccEEEEeccCCCCcccCCCccccccc
Q 046764 813 QEVEVFPNLRDLFLLRCSKLLGTLPK---HLPSLQKLVIQRCEKLLVDLPSLPSLNELKLGGCKKGGLQKGQPIIGRRIH 889 (1113)
Q Consensus 813 ~~~~~~~~L~~L~L~~c~~L~~~lp~---~l~~L~~L~L~~c~~L~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~ 889 (1113)
..+..+++|+.|++++| .+. .+|. .+ +|++|++++|.........+++|+.|++++|......+
T Consensus 276 ~~~~~l~~L~~L~l~~~-~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~---------- 342 (570)
T 2z63_A 276 DLFNCLTNVSSFSLVSV-TIE-RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS---------- 342 (570)
T ss_dssp TTTGGGTTCSEEEEESC-EEC-SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCC----------
T ss_pred hhhcCcCcccEEEecCc-cch-hhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccc----------
Confidence 34567888999999888 565 5554 34 88899998885432223458889999998887655322
Q ss_pred cccCCCCCCcccccccCCCCC-c---CcccCCCCCCceEEEcccCCCcccccccCCCCCcccCCCCccEEEeecCCCCcc
Q 046764 890 YGCADTSSSLRVCLQCCNSLT-N---NARVQLPLSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHILSCPSPTS 965 (1113)
Q Consensus 890 ~~~~~~l~~L~~L~~~~N~L~-~---~~~l~~l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~c~~L~~ 965 (1113)
...+++|+.|++..|.+. . +..+..+++|+.|++++|. +..+ +.. + ..+++|++|++++|.....
T Consensus 343 ---~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~-~~~-----~-~~l~~L~~L~l~~n~l~~~ 411 (570)
T 2z63_A 343 ---EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITM-SSN-----F-LGLEQLEHLDFQHSNLKQM 411 (570)
T ss_dssp ---CCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS-EEEE-EEE-----E-ETCTTCCEEECTTSEEESC
T ss_pred ---cccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCc-cccc-ccc-----c-cccCCCCEEEccCCccccc
Confidence 267788888888888877 2 4567788899999998886 4444 221 2 3788899999888653222
Q ss_pred cCCC---CCcCCccCeEEEcccccccccc-ccCCCCCCCeEEEEecCCCc-cccCCC---CCCccEEEEeecCCCCcccc
Q 046764 966 IFSE---NELPATLQRLEVNSCSKLALLT-LSGNLPQGPKYLELTSCSKW-ESIADN---NTSLQVITVFRCKNLKTLPD 1037 (1113)
Q Consensus 966 ll~~---~~l~~sL~~L~i~~c~~L~~l~-l~~~lp~~L~~L~L~~c~~L-~~lp~~---l~sL~~L~Ls~c~~l~~lP~ 1037 (1113)
.+. ..+ ++|++|++++|....... ....++. |+.|++++|.-. ..+|.. +++|++|++++|......|.
T Consensus 412 -~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~ 488 (570)
T 2z63_A 412 -SEFSVFLSL-RNLIYLDISHTHTRVAFNGIFNGLSS-LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488 (570)
T ss_dssp -TTSCTTTTC-TTCCEEECTTSCCEECCTTTTTTCTT-CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT
T ss_pred -cchhhhhcC-CCCCEEeCcCCcccccchhhhhcCCc-CcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChh
Confidence 221 233 378888888875433221 1124555 888888887433 246654 78999999998765444478
Q ss_pred cCCCCCCcCeeee-ccccccccCCC-CCCCCcCcEEEeCCCCC
Q 046764 1038 GLHKLNNLQAFTI-CKNLVSFPKGG-LPSTQLRDPDITGCQKL 1078 (1113)
Q Consensus 1038 ~l~~L~sL~~L~L-cn~L~slp~~~-~~~~sL~~L~l~~C~~L 1078 (1113)
.+..+++|+.|++ .|++..+|... ..+++|+.|++++|+--
T Consensus 489 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 489 AFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence 8888999999999 77888877654 35678999999886533
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=3.7e-24 Score=259.75 Aligned_cols=416 Identities=17% Similarity=0.114 Sum_probs=223.7
Q ss_pred CCeeEEccCCcC-------CCCCCccccEEecCCCCCccc-ChhhhccccccEEecccccccccccccccCCCcceEEEc
Q 046764 592 ENLQTFLPTTVS-------HGGDLKHLRHLDLSETDIQIL-PESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDN 663 (1113)
Q Consensus 592 ~~Lr~L~~~~~~-------~i~~L~~Lr~L~Ls~~~i~~L-P~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L 663 (1113)
++++.|.+.++. .|.++++|++|+|++|+++.+ |..|+++++|++|+|++| .+..+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCcc--ccCCccEEec
Confidence 566666665543 456666667777766666655 556666666777777663 45566655 6666666766
Q ss_pred CCceecc-cccccccccc-ccccccceeeccccCccChhhHHHhhcCCCccc--ceEEeeecCCCCCCCCchhhHhhhcc
Q 046764 664 FDFCCWK-DIDSALQELK-LLHLHGALEISKLENVRDASEAGEAQLNGKKNL--KTLLLQRTSNNGDSREPEIETHVLDM 739 (1113)
Q Consensus 664 ~~~~i~~-~~~~~l~~L~-L~~L~g~L~i~~l~~~~~~~~~~~~~l~~l~~L--~~L~L~~~~~~~~~~~~~~~~~~l~~ 739 (1113)
++|.+.. ..|..++.+. |++|. +..+.+.. ..+..+++| +.|++++|...+.. ..+..
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~--L~~n~l~~---------~~~~~l~~L~L~~L~l~~n~l~~~~-------~~~~~ 159 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLG--LSTTHLEK---------SSVLPIAHLNISKVLLVLGETYGEK-------EDPEG 159 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEE--EEESSCCG---------GGGGGGTTSCEEEEEEEECTTTTSS-------CCTTT
T ss_pred cCCccccccchhhhccCCcceEEE--ecCcccch---------hhccccccceeeEEEeecccccccc-------ccccc
Confidence 6665543 2344555555 44443 22222211 123334444 55555555420000 01111
Q ss_pred CCCCCCcceEEE--eccCccccccCcccccccccCCCcccceEecCCCCCCCCCcceeeccccCcCcc---cccCCCCcc
Q 046764 740 LKPHQNLERFCI--SGYGETLRFENMQEREDWIPYSSSQEVEFYGNGCLIPFPSLETLRFENMQERED---WIPYSSSQE 814 (1113)
Q Consensus 740 L~~~~~L~~L~L--~~~~~~~~l~~L~~L~~~Lpl~~l~~~~~~g~~~l~~~~~L~~L~L~~~~~l~~---~~~~~~~~~ 814 (1113)
+..+.. +.+++ .++.... .+ ....+..+++|+.|+++++..... +.. ....
T Consensus 160 l~~l~~-~~l~l~l~~n~~~~----------~~-----------~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~~~~ 215 (520)
T 2z7x_B 160 LQDFNT-ESLHIVFPTNKEFH----------FI-----------LDVSVKTVANLELSNIKCVLEDNKCSYFLS--ILAK 215 (520)
T ss_dssp TTTCCE-EEEEEECCSSSCCC----------CC-----------CCCCCTTCSEEEECCEEECCSTTTTHHHHH--HHHG
T ss_pred cccccc-ceEEEEeccCcchh----------hh-----------hhhhhhcccceeeccccccccccccceeec--chhh
Confidence 111111 12222 1111000 00 002334567777777766431000 000 0013
Q ss_pred cccCCCccEEEEecCcCcccccCC------CCCCccEEEEeccc---CccccC-----CCCCcccEEEEeccCCCCcccC
Q 046764 815 VEVFPNLRDLFLLRCSKLLGTLPK------HLPSLQKLVIQRCE---KLLVDL-----PSLPSLNELKLGGCKKGGLQKG 880 (1113)
Q Consensus 815 ~~~~~~L~~L~L~~c~~L~~~lp~------~l~~L~~L~L~~c~---~L~~~l-----~~l~~L~~L~L~~~~~~~~~~~ 880 (1113)
++.+++|+.|++++| .+.+..+. ..++|+.|++++|. .++..+ ..+++|+.+++++|.. ..+
T Consensus 216 l~~l~~L~~L~l~~~-~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p-- 291 (520)
T 2z7x_B 216 LQTNPKLSNLTLNNI-ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFP-- 291 (520)
T ss_dssp GGGCTTCCEEEEEEE-EEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSC--
T ss_pred hccccchhhcccccc-ccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecc--
Confidence 456777777777776 33321111 23477777777773 444444 5577777777777765 211
Q ss_pred CCccccccccccCCCC---CCcccccccCCCCCcCcccCCCCCCceEEEcccCCCcccccccCCCCCcccCCCCccEEEe
Q 046764 881 QPIIGRRIHYGCADTS---SSLRVCLQCCNSLTNNARVQLPLSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHI 957 (1113)
Q Consensus 881 ~~l~~l~l~~~~~~~l---~~L~~L~~~~N~L~~~~~l~~l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L 957 (1113)
...+..+ .+|+.|.+.+|.+........+++|++|++++|. +... +|..+. .+++|++|++
T Consensus 292 ---------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~-l~~~-----~~~~~~-~l~~L~~L~L 355 (520)
T 2z7x_B 292 ---------QSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNL-LTDT-----VFENCG-HLTELETLIL 355 (520)
T ss_dssp ---------THHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSC-CCTT-----TTTTCC-CCSSCCEEEC
T ss_pred ---------hhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCc-cChh-----hhhhhc-cCCCCCEEEc
Confidence 0111111 3466666655555532223566777777777765 3322 333333 6677777777
Q ss_pred ecCCCCc--ccCC--CCCcCCccCeEEEccccccccccc--cCCCCCCCeEEEEecCCCccccCCCC-CCccEEEEeecC
Q 046764 958 LSCPSPT--SIFS--ENELPATLQRLEVNSCSKLALLTL--SGNLPQGPKYLELTSCSKWESIADNN-TSLQVITVFRCK 1030 (1113)
Q Consensus 958 ~~c~~L~--~ll~--~~~l~~sL~~L~i~~c~~L~~l~l--~~~lp~~L~~L~L~~c~~L~~lp~~l-~sL~~L~Ls~c~ 1030 (1113)
++|..-. . ++ ...++ +|+.|+++++.--..++. ...++. |+.|++++|.-...+|..+ ++|+.|++++|
T Consensus 356 ~~N~l~~l~~-~~~~~~~l~-~L~~L~Ls~N~l~~~l~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N- 431 (520)
T 2z7x_B 356 QMNQLKELSK-IAEMTTQMK-SLQQLDISQNSVSYDEKKGDCSWTKS-LLSLNMSSNILTDTIFRCLPPRIKVLDLHSN- 431 (520)
T ss_dssp CSSCCCBHHH-HHHHHTTCT-TCCEEECCSSCCBCCGGGCSCCCCTT-CCEEECCSSCCCGGGGGSCCTTCCEEECCSS-
T ss_pred cCCccCcccc-chHHHhhCC-CCCEEECCCCcCCcccccchhccCcc-CCEEECcCCCCCcchhhhhcccCCEEECCCC-
Confidence 6654322 1 11 12333 666777666543222332 123444 8888888875445566553 68889999886
Q ss_pred CCCcccccCCCCCCcCeeee-ccccccccCC-CCCCCCcCcEEEeCCC
Q 046764 1031 NLKTLPDGLHKLNNLQAFTI-CKNLVSFPKG-GLPSTQLRDPDITGCQ 1076 (1113)
Q Consensus 1031 ~l~~lP~~l~~L~sL~~L~L-cn~L~slp~~-~~~~~sL~~L~l~~C~ 1076 (1113)
.++.+|..+..+++|+.|++ .|++..+|.. ...+++|+.|++++++
T Consensus 432 ~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 432 KIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCC
Confidence 56688888888888999998 8888888876 3356788888888765
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=6.9e-24 Score=267.82 Aligned_cols=251 Identities=13% Similarity=0.118 Sum_probs=148.4
Q ss_pred CCCCCCcceeeccccCcCcccccCCCCcccccCCCccEEEEecCcCcccccCC---CCCC-ccEEEEeccc--CccccCC
Q 046764 786 LIPFPSLETLRFENMQEREDWIPYSSSQEVEVFPNLRDLFLLRCSKLLGTLPK---HLPS-LQKLVIQRCE--KLLVDLP 859 (1113)
Q Consensus 786 l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~lp~---~l~~-L~~L~L~~c~--~L~~~l~ 859 (1113)
+..+++|+.|+++++.-. . ++ .++.+++|+.|++++| .+. .+|. .+++ |+.|++++|. .++..+.
T Consensus 569 l~~L~~L~~L~Ls~N~l~-~-----lp-~~~~L~~L~~L~Ls~N-~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~ 639 (876)
T 4ecn_A 569 LQKMVKLGLLDCVHNKVR-H-----LE-AFGTNVKLTDLKLDYN-QIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFN 639 (876)
T ss_dssp HTTCTTCCEEECTTSCCC-B-----CC-CCCTTSEESEEECCSS-CCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCC
T ss_pred hhcCCCCCEEECCCCCcc-c-----ch-hhcCCCcceEEECcCC-ccc-cchHHHhhccccCCEEECcCCCCCcCchhhh
Confidence 455777777777765422 1 12 4567788888888887 565 6664 3455 7777777774 2222222
Q ss_pred CC--CcccEEEEeccCCCCcccCCCccccccccccC--CCCCCcccccccCCCCC-cCcc-cCCCCCCceEEEcccCCCc
Q 046764 860 SL--PSLNELKLGGCKKGGLQKGQPIIGRRIHYGCA--DTSSSLRVCLQCCNSLT-NNAR-VQLPLSLKDLSIAFCDNLR 933 (1113)
Q Consensus 860 ~l--~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~--~~l~~L~~L~~~~N~L~-~~~~-l~~l~~L~~L~Ls~c~~L~ 933 (1113)
.+ ++|+.|++++|......+. ++ ..+ ..+++|+.|++..|.+. .+.. +..+++|+.|++++|. +.
T Consensus 640 ~~~~~~L~~L~Ls~N~l~g~ip~-------l~-~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~-L~ 710 (876)
T 4ecn_A 640 AKSVYVMGSVDFSYNKIGSEGRN-------IS-CSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL-MT 710 (876)
T ss_dssp TTCSSCEEEEECCSSCTTTTSSS-------CS-SCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC-CS
T ss_pred ccccCCCCEEECcCCcCCCcccc-------ch-hhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc-CC
Confidence 22 3488888888877653321 00 011 12335666666555555 2222 2356666666666664 44
Q ss_pred ccccccCCCCCc--ccCCCCccEEEeecCCCCcccCCCCCcCCccCeEEEccccccccccccCCCCCCCeEEEEecCCCc
Q 046764 934 TLVEEEGIPKGS--RKYSSHLECLHILSCPSPTSIFSENELPATLQRLEVNSCSKLALLTLSGNLPQGPKYLELTSCSKW 1011 (1113)
Q Consensus 934 ~l~~~~~lp~~l--~~~l~~L~~L~L~~c~~L~~ll~~~~l~~sL~~L~i~~c~~L~~l~l~~~lp~~L~~L~L~~c~~L 1011 (1113)
.+ |...+.... ..++++|+.|++++|. ++. +|..-. ..+++. |+.|++++| .+
T Consensus 711 ~i-p~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~-lp~~l~--------------------~~~l~~-L~~L~Ls~N-~L 765 (876)
T 4ecn_A 711 SI-PENSLKPKDGNYKNTYLLTTIDLRFNK-LTS-LSDDFR--------------------ATTLPY-LSNMDVSYN-CF 765 (876)
T ss_dssp CC-CTTSSSCTTSCCTTGGGCCEEECCSSC-CCC-CCGGGS--------------------TTTCTT-CCEEECCSS-CC
T ss_pred cc-ChHHhccccccccccCCccEEECCCCC-Ccc-chHHhh--------------------hccCCC-cCEEEeCCC-CC
Confidence 43 332211000 0122356666665542 222 111100 013444 777777775 45
Q ss_pred cccCCC---CCCccEEEEee------cCCCCcccccCCCCCCcCeeee-ccccccccCCCCCCCCcCcEEEeCCCCCccC
Q 046764 1012 ESIADN---NTSLQVITVFR------CKNLKTLPDGLHKLNNLQAFTI-CKNLVSFPKGGLPSTQLRDPDITGCQKLEAL 1081 (1113)
Q Consensus 1012 ~~lp~~---l~sL~~L~Ls~------c~~l~~lP~~l~~L~sL~~L~L-cn~L~slp~~~~~~~sL~~L~l~~C~~L~~l 1081 (1113)
..+|.. +++|+.|+|++ |...+.+|..+..+++|+.|+| .|++..+|.... ++|+.|++++|+ +..+
T Consensus 766 ~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~--~~L~~LdLs~N~-l~~i 842 (876)
T 4ecn_A 766 SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT--PQLYILDIADNP-NISI 842 (876)
T ss_dssp SSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--SSSCEEECCSCT-TCEE
T ss_pred CccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhc--CCCCEEECCCCC-CCcc
Confidence 557665 89999999976 5567788999999999999999 888899998754 499999999976 4344
Q ss_pred C
Q 046764 1082 P 1082 (1113)
Q Consensus 1082 ~ 1082 (1113)
.
T Consensus 843 ~ 843 (876)
T 4ecn_A 843 D 843 (876)
T ss_dssp E
T ss_pred C
Confidence 3
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=8.1e-24 Score=258.57 Aligned_cols=432 Identities=17% Similarity=0.133 Sum_probs=265.5
Q ss_pred ccccEEecCCCCCccc-ChhhhccccccEEeccccccccccc-ccccCCCcceEEEcCCceecccccccccccc-ccccc
Q 046764 609 KHLRHLDLSETDIQIL-PESVNTLYNLRMLMLQKCNQLEKMC-SDMGNLLKLHHLDNFDFCCWKDIDSALQELK-LLHLH 685 (1113)
Q Consensus 609 ~~Lr~L~Ls~~~i~~L-P~~i~~L~~L~~LdL~~c~~l~~LP-~~i~~L~~L~~L~L~~~~i~~~~~~~l~~L~-L~~L~ 685 (1113)
++|++|+|++|+++.+ |..++++++|++|++++| .+..+| ..++++++|++|++++|.+....+..+..+. |++|.
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 6899999999999987 678999999999999996 455554 7799999999999999988776666677777 77665
Q ss_pred cceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCCCCCcceEEEeccCccccccCccc
Q 046764 686 GALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGETLRFENMQE 765 (1113)
Q Consensus 686 g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~L~~~~~~~~l~~L~~ 765 (1113)
+.-+.+.... .+..++++++|+.|+++.|...+. .....+..+++|+.|+++++....
T Consensus 105 --Ls~n~l~~~~-----~~~~~~~l~~L~~L~L~~n~~~~~--------~~~~~~~~l~~L~~L~L~~n~l~~------- 162 (549)
T 2z81_A 105 --LMGNPYQTLG-----VTSLFPNLTNLQTLRIGNVETFSE--------IRRIDFAGLTSLNELEIKALSLRN------- 162 (549)
T ss_dssp --CTTCCCSSSC-----SSCSCTTCTTCCEEEEEESSSCCE--------ECTTTTTTCCEEEEEEEEETTCCE-------
T ss_pred --CCCCcccccc-----hhhhhhccCCccEEECCCCccccc--------cCHhhhhcccccCeeeccCCcccc-------
Confidence 3222232211 123578899999999998852211 012356778899999999865332
Q ss_pred ccccccCCCcccceEecCCCCCCCCCcceeeccccCcCcccccCCCCcccccCCCccEEEEecCcCcccc------cCCC
Q 046764 766 REDWIPYSSSQEVEFYGNGCLIPFPSLETLRFENMQEREDWIPYSSSQEVEVFPNLRDLFLLRCSKLLGT------LPKH 839 (1113)
Q Consensus 766 L~~~Lpl~~l~~~~~~g~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~------lp~~ 839 (1113)
..| ..+..+++|+.|++.++... ... ....+.+++|+.|++++| .+.+. +...
T Consensus 163 ---~~~------------~~l~~l~~L~~L~l~~n~~~-~~~----~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~ 221 (549)
T 2z81_A 163 ---YQS------------QSLKSIRDIHHLTLHLSESA-FLL----EIFADILSSVRYLELRDT-NLARFQFSPLPVDEV 221 (549)
T ss_dssp ---ECT------------TTTTTCSEEEEEEEECSBST-THH----HHHHHSTTTBSEEEEESC-BCTTCCCCCCSSCCC
T ss_pred ---cCh------------hhhhccccCceEecccCccc-ccc----hhhHhhcccccEEEccCC-ccccccccccchhhh
Confidence 001 23344455555555543211 000 000123455555555555 33321 1123
Q ss_pred CCCccEEEEecccC-------ccccCCCCCcccEEEEeccCCCCcccC-----------CCcccccccc-----------
Q 046764 840 LPSLQKLVIQRCEK-------LLVDLPSLPSLNELKLGGCKKGGLQKG-----------QPIIGRRIHY----------- 890 (1113)
Q Consensus 840 l~~L~~L~L~~c~~-------L~~~l~~l~~L~~L~L~~~~~~~~~~~-----------~~l~~l~l~~----------- 890 (1113)
+++|+.|+++++.. +...+..+++|+.|++++|........ .++..+.+..
T Consensus 222 ~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~ 301 (549)
T 2z81_A 222 SSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYD 301 (549)
T ss_dssp CCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCC
T ss_pred hhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhccc
Confidence 44555555554421 111122244445555554433221100 0111111100
Q ss_pred --ccCCCCCCcccccccCCCCC-cCccc-CCCCCCceEEEcccCCCcccccccCCCCCcccCCCCccEEEeecCCCCccc
Q 046764 891 --GCADTSSSLRVCLQCCNSLT-NNARV-QLPLSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHILSCPSPTSI 966 (1113)
Q Consensus 891 --~~~~~l~~L~~L~~~~N~L~-~~~~l-~~l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~c~~L~~l 966 (1113)
......++|+.|.+.+|.+. .+..+ ..+++|+.|++++|. +....+.. +..+ ..+++|++|++++|. ++.
T Consensus 302 l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~-l~~~~~~~--~~~~-~~l~~L~~L~Ls~N~-l~~- 375 (549)
T 2z81_A 302 LSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENL-MVEEYLKN--SACK-GAWPSLQTLVLSQNH-LRS- 375 (549)
T ss_dssp CCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSC-CCHHHHHH--HTCT-TSSTTCCEEECTTSC-CCC-
T ss_pred chhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCc-cccccccc--hhhh-hccccCcEEEccCCc-ccc-
Confidence 01122456777777777777 34333 468899999999887 33321211 0112 367889999998874 333
Q ss_pred CC-----CCCcCCccCeEEEcccccccccccc-CCCCCCCeEEEEecCCCccccCCC-CCCccEEEEeecCCCCcccccC
Q 046764 967 FS-----ENELPATLQRLEVNSCSKLALLTLS-GNLPQGPKYLELTSCSKWESIADN-NTSLQVITVFRCKNLKTLPDGL 1039 (1113)
Q Consensus 967 l~-----~~~l~~sL~~L~i~~c~~L~~l~l~-~~lp~~L~~L~L~~c~~L~~lp~~-l~sL~~L~Ls~c~~l~~lP~~l 1039 (1113)
++ ...+ ++|++|+++++ .++.++.. ..++. |+.|++++| .++.+|.. +++|++|++++|. +..++
T Consensus 376 ~~~~~~~~~~l-~~L~~L~Ls~N-~l~~lp~~~~~~~~-L~~L~Ls~N-~l~~l~~~~~~~L~~L~Ls~N~-l~~~~--- 447 (549)
T 2z81_A 376 MQKTGEILLTL-KNLTSLDISRN-TFHPMPDSCQWPEK-MRFLNLSST-GIRVVKTCIPQTLEVLDVSNNN-LDSFS--- 447 (549)
T ss_dssp HHHHHHHGGGC-TTCCEEECTTC-CCCCCCSCCCCCTT-CCEEECTTS-CCSCCCTTSCTTCSEEECCSSC-CSCCC---
T ss_pred cccchhhhhcC-CCCCEEECCCC-CCccCChhhccccc-ccEEECCCC-CcccccchhcCCceEEECCCCC-hhhhc---
Confidence 21 1233 37889999887 45544322 23344 999999996 57777776 6799999999974 55554
Q ss_pred CCCCCcCeeee-ccccccccCCCCCCCCcCcEEEeCCCCCccCCCCCCC--CCcCccccccccC
Q 046764 1040 HKLNNLQAFTI-CKNLVSFPKGGLPSTQLRDPDITGCQKLEALPDGDLS--STFKTGKSSKCGI 1100 (1113)
Q Consensus 1040 ~~L~sL~~L~L-cn~L~slp~~~~~~~sL~~L~l~~C~~L~~l~~~~l~--~sL~~L~~~~c~~ 1100 (1113)
..+++|++|++ .|++..+|... .+++|+.|++++| +++.++...+. ..|+.+++++++.
T Consensus 448 ~~l~~L~~L~Ls~N~l~~ip~~~-~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 448 LFLPRLQELYISRNKLKTLPDAS-LFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp CCCTTCCEEECCSSCCSSCCCGG-GCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred ccCChhcEEECCCCccCcCCCcc-cCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCCc
Confidence 57899999999 89999999743 4569999999985 77777764332 3588899888754
No 18
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.91 E-value=4.3e-23 Score=253.33 Aligned_cols=243 Identities=19% Similarity=0.196 Sum_probs=174.1
Q ss_pred CCCCCCCCcceeeccccCcCcccccCCCCcccccCCCccEEEEecCcCcccccC-CCCCCccEEEEecccCccc-cCCCC
Q 046764 784 GCLIPFPSLETLRFENMQEREDWIPYSSSQEVEVFPNLRDLFLLRCSKLLGTLP-KHLPSLQKLVIQRCEKLLV-DLPSL 861 (1113)
Q Consensus 784 ~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~lp-~~l~~L~~L~L~~c~~L~~-~l~~l 861 (1113)
..+..+++|+.|+++++.. ... +.....+ +|+.|++++| .+. .+| ..+++|+.|++.+|..... ....+
T Consensus 276 ~~~~~l~~L~~L~l~~~~l-~~l-----~~~~~~~-~L~~L~l~~n-~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (570)
T 2z63_A 276 DLFNCLTNVSSFSLVSVTI-ERV-----KDFSYNF-GWQHLELVNC-KFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDL 346 (570)
T ss_dssp TTTGGGTTCSEEEEESCEE-CSC-----CBCCSCC-CCSEEEEESC-BCS-SCCBCBCSSCCEEEEESCBSCCBCCCCBC
T ss_pred hhhcCcCcccEEEecCccc-hhh-----hhhhccC-CccEEeeccC-ccc-ccCcccccccCEEeCcCCccccccccccC
Confidence 4456688999999987642 222 2334556 9999999999 566 565 4789999999999863321 22568
Q ss_pred CcccEEEEeccCCCCcccCCCccccccccccCCCCCCcccccccCCCCC-cCcccCCCCCCceEEEcccCCCcccccccC
Q 046764 862 PSLNELKLGGCKKGGLQKGQPIIGRRIHYGCADTSSSLRVCLQCCNSLT-NNARVQLPLSLKDLSIAFCDNLRTLVEEEG 940 (1113)
Q Consensus 862 ~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~~l~~L~~L~~~~N~L~-~~~~l~~l~~L~~L~Ls~c~~L~~l~~~~~ 940 (1113)
++|++|++++|....... ....+..+++|+.|++..|.+. .+..+..+++|+.|++++|. +...
T Consensus 347 ~~L~~L~l~~n~l~~~~~---------~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~-l~~~----- 411 (570)
T 2z63_A 347 PSLEFLDLSRNGLSFKGC---------CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQM----- 411 (570)
T ss_dssp TTCCEEECCSSCCBEEEE---------EEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESC-----
T ss_pred CCCCEEeCcCCccCcccc---------ccccccccCccCEEECCCCccccccccccccCCCCEEEccCCc-cccc-----
Confidence 999999999998764220 1235677899999999988888 44448899999999999986 3333
Q ss_pred CCCCcccCCCCccEEEeecCCCCcccCCC--CCcCCccCeEEEccccccc-ccc-ccCCCCCCCeEEEEecCCCcccc-C
Q 046764 941 IPKGSRKYSSHLECLHILSCPSPTSIFSE--NELPATLQRLEVNSCSKLA-LLT-LSGNLPQGPKYLELTSCSKWESI-A 1015 (1113)
Q Consensus 941 lp~~l~~~l~~L~~L~L~~c~~L~~ll~~--~~l~~sL~~L~i~~c~~L~-~l~-l~~~lp~~L~~L~L~~c~~L~~l-p 1015 (1113)
.|......+++|++|++++|..... .+. ..++ +|+.|++.+|.-.. .+. ....++. |+.|++++|. +..+ |
T Consensus 412 ~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~-~L~~L~l~~n~l~~~~~p~~~~~l~~-L~~L~l~~n~-l~~~~~ 487 (570)
T 2z63_A 412 SEFSVFLSLRNLIYLDISHTHTRVA-FNGIFNGLS-SLEVLKMAGNSFQENFLPDIFTELRN-LTFLDLSQCQ-LEQLSP 487 (570)
T ss_dssp TTSCTTTTCTTCCEEECTTSCCEEC-CTTTTTTCT-TCCEEECTTCEEGGGEECSCCTTCTT-CCEEECTTSC-CCEECT
T ss_pred cchhhhhcCCCCCEEeCcCCccccc-chhhhhcCC-cCcEEECcCCcCccccchhhhhcccC-CCEEECCCCc-cccCCh
Confidence 2211224889999999999864433 332 2344 89999999986431 222 2235666 9999999984 5555 5
Q ss_pred CC---CCCccEEEEeecCCCCcc-cccCCCCCCcCeeee-ccccc
Q 046764 1016 DN---NTSLQVITVFRCKNLKTL-PDGLHKLNNLQAFTI-CKNLV 1055 (1113)
Q Consensus 1016 ~~---l~sL~~L~Ls~c~~l~~l-P~~l~~L~sL~~L~L-cn~L~ 1055 (1113)
.. +++|++|++++|. +..+ |..+..+++|+.|++ .|.+.
T Consensus 488 ~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 488 TAFNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp TTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hhhhcccCCCEEeCCCCc-CCCCCHHHhhcccCCcEEEecCCccc
Confidence 44 8999999999985 5555 567899999999999 66555
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=1.2e-23 Score=260.88 Aligned_cols=369 Identities=14% Similarity=0.125 Sum_probs=236.7
Q ss_pred CcccChhhhccccccEEeccccccccc------------------cccccc--CCCcceEEEcCCceecccccccccccc
Q 046764 621 IQILPESVNTLYNLRMLMLQKCNQLEK------------------MCSDMG--NLLKLHHLDNFDFCCWKDIDSALQELK 680 (1113)
Q Consensus 621 i~~LP~~i~~L~~L~~LdL~~c~~l~~------------------LP~~i~--~L~~L~~L~L~~~~i~~~~~~~l~~L~ 680 (1113)
++.+|..++++++|++|+|++|. +.. +|..++ ++++|++|++++|.+.+..|..+.+|.
T Consensus 195 l~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 273 (636)
T 4eco_A 195 ITFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP 273 (636)
T ss_dssp EEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCS
T ss_pred CccCCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCC
Confidence 33577888888888888888854 555 888888 888888888888877777777777777
Q ss_pred -ccccccceeeccccCccChhh-HHHhhcCC------CcccceEEeeecCCCCCCCCchhhHhhhc--cCCCCCCcceEE
Q 046764 681 -LLHLHGALEISKLENVRDASE-AGEAQLNG------KKNLKTLLLQRTSNNGDSREPEIETHVLD--MLKPHQNLERFC 750 (1113)
Q Consensus 681 -L~~L~g~L~i~~l~~~~~~~~-~~~~~l~~------l~~L~~L~L~~~~~~~~~~~~~~~~~~l~--~L~~~~~L~~L~ 750 (1113)
|+.|. +........ ..+..++. +++|+.|+++.|... .++. .+..+++|+.|+
T Consensus 274 ~L~~L~-------Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~----------~ip~~~~l~~l~~L~~L~ 336 (636)
T 4eco_A 274 EMQLIN-------VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK----------TFPVETSLQKMKKLGMLE 336 (636)
T ss_dssp SCCEEE-------CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS----------SCCCHHHHTTCTTCCEEE
T ss_pred CCCEEE-------CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC----------ccCchhhhccCCCCCEEe
Confidence 66554 222111122 23334444 488999999877632 1333 567788899998
Q ss_pred EeccCccccccCcccccccccCCCcccceEecCCCCCCCCCcceeeccccCcCcccccCCCCcccccCCC-ccEEEEecC
Q 046764 751 ISGYGETLRFENMQEREDWIPYSSSQEVEFYGNGCLIPFPSLETLRFENMQEREDWIPYSSSQEVEVFPN-LRDLFLLRC 829 (1113)
Q Consensus 751 L~~~~~~~~l~~L~~L~~~Lpl~~l~~~~~~g~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~-L~~L~L~~c 829 (1113)
++++.... .+ +.+..+++|+.|+++++.- .. .+..+..+++ |+.|++++|
T Consensus 337 L~~N~l~g----------~i-------------p~~~~l~~L~~L~L~~N~l-~~-----lp~~l~~l~~~L~~L~Ls~N 387 (636)
T 4eco_A 337 CLYNQLEG----------KL-------------PAFGSEIKLASLNLAYNQI-TE-----IPANFCGFTEQVENLSFAHN 387 (636)
T ss_dssp CCSCCCEE----------EC-------------CCCEEEEEESEEECCSSEE-EE-----CCTTSEEECTTCCEEECCSS
T ss_pred CcCCcCcc----------ch-------------hhhCCCCCCCEEECCCCcc-cc-----ccHhhhhhcccCcEEEccCC
Confidence 88764321 11 1234567888888887632 22 2335667888 999999888
Q ss_pred cCcccccCCC-----CCCccEEEEecccC---ccccCC-------CCCcccEEEEeccCCCCcccCCCccccccccccCC
Q 046764 830 SKLLGTLPKH-----LPSLQKLVIQRCEK---LLVDLP-------SLPSLNELKLGGCKKGGLQKGQPIIGRRIHYGCAD 894 (1113)
Q Consensus 830 ~~L~~~lp~~-----l~~L~~L~L~~c~~---L~~~l~-------~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~ 894 (1113)
.+. .+|.. +++|+.|++++|.. .+..++ .+++|+.|++++|..... +...+.
T Consensus 388 -~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~l-----------p~~~~~ 454 (636)
T 4eco_A 388 -KLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKF-----------PKELFS 454 (636)
T ss_dssp -CCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSC-----------CTHHHH
T ss_pred -cCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcC-----------CHHHHc
Confidence 566 67753 34788888888843 223344 566899999999887752 234556
Q ss_pred CCCCcccccccCCCCC-cCc-ccCCC-------CCCceEEEcccCCCcccccccCCCCCcc-cCCCCccEEEeecCCCCc
Q 046764 895 TSSSLRVCLQCCNSLT-NNA-RVQLP-------LSLKDLSIAFCDNLRTLVEEEGIPKGSR-KYSSHLECLHILSCPSPT 964 (1113)
Q Consensus 895 ~l~~L~~L~~~~N~L~-~~~-~l~~l-------~~L~~L~Ls~c~~L~~l~~~~~lp~~l~-~~l~~L~~L~L~~c~~L~ 964 (1113)
.+++|+.|++.+|.++ .+. .+... ++|+.|++++|. ++.+ | ..+. ..+++|++|++++|. ++
T Consensus 455 ~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l-p-----~~~~~~~l~~L~~L~Ls~N~-l~ 526 (636)
T 4eco_A 455 TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKL-S-----DDFRATTLPYLVGIDLSYNS-FS 526 (636)
T ss_dssp TTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSC-CCBC-C-----GGGSTTTCTTCCEEECCSSC-CS
T ss_pred cCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCc-CCcc-C-----hhhhhccCCCcCEEECCCCC-CC
Confidence 6888999988888887 222 22222 389999999986 5544 3 3332 378899999998864 33
Q ss_pred ccCCCC-CcCCccCeEEEccccccccccccCCCCCCCeEEEEecCCCccccCCC---CCCccEEEEeecCCCCcccccCC
Q 046764 965 SIFSEN-ELPATLQRLEVNSCSKLALLTLSGNLPQGPKYLELTSCSKWESIADN---NTSLQVITVFRCKNLKTLPDGLH 1040 (1113)
Q Consensus 965 ~ll~~~-~l~~sL~~L~i~~c~~L~~l~l~~~lp~~L~~L~L~~c~~L~~lp~~---l~sL~~L~Ls~c~~l~~lP~~l~ 1040 (1113)
. +|.. .-.++|+.|+++++..+ +++...+.+|.. +++|++|++++|. ++.+|..+.
T Consensus 527 ~-ip~~~~~l~~L~~L~Ls~N~~l------------------s~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~~~ 586 (636)
T 4eco_A 527 K-FPTQPLNSSTLKGFGIRNQRDA------------------QGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEKIT 586 (636)
T ss_dssp S-CCCGGGGCSSCCEEECCSCBCT------------------TCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC
T ss_pred C-cChhhhcCCCCCEEECCCCccc------------------ccCcccccChHHHhcCCCCCEEECCCCc-CCccCHhHh
Confidence 3 2211 11124444444333211 122233445544 7899999999975 488988766
Q ss_pred CCCCcCeeee-ccccccccCCCC---------CCCCcCcEEEeCCCCCc
Q 046764 1041 KLNNLQAFTI-CKNLVSFPKGGL---------PSTQLRDPDITGCQKLE 1079 (1113)
Q Consensus 1041 ~L~sL~~L~L-cn~L~slp~~~~---------~~~sL~~L~l~~C~~L~ 1079 (1113)
++|+.|++ .|.+..++.... .+...+..++.+|+.|+
T Consensus 587 --~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 587 --PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp --TTCCEEECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred --CcCCEEECcCCCCccccHHhcchhhhcccceeecCCccccCCCcccc
Confidence 79999999 777766543221 11234566889999875
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=6.6e-23 Score=248.72 Aligned_cols=415 Identities=14% Similarity=0.107 Sum_probs=282.2
Q ss_pred ccccEEecCCCCCcccC-hhhhccccccEEecccccccccccccccCCCcceEEEcCCceecccccccccccc-cccccc
Q 046764 609 KHLRHLDLSETDIQILP-ESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNFDFCCWKDIDSALQELK-LLHLHG 686 (1113)
Q Consensus 609 ~~Lr~L~Ls~~~i~~LP-~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~~~~i~~~~~~~l~~L~-L~~L~g 686 (1113)
++|++|+|++|.++.+| ..|+++++|++|+|++|......|..++++++|++|++++|.+. ..|.. .+. |++|.
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~- 96 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLD- 96 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEE-
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEe-
Confidence 79999999999999885 68999999999999996443444788999999999999999775 34443 455 55554
Q ss_pred ceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCCCCCc--ceEEEeccCc--cccccC
Q 046764 687 ALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKPHQNL--ERFCISGYGE--TLRFEN 762 (1113)
Q Consensus 687 ~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L--~~L~L~~~~~--~~~l~~ 762 (1113)
+.-+.+... ..+..++++++|+.|+++.|...+ ..+..+++| +.|+++++.. ..
T Consensus 97 -L~~N~l~~~-----~~p~~~~~l~~L~~L~L~~n~l~~------------~~~~~l~~L~L~~L~l~~n~l~~~~---- 154 (520)
T 2z7x_B 97 -LSFNAFDAL-----PICKEFGNMSQLKFLGLSTTHLEK------------SSVLPIAHLNISKVLLVLGETYGEK---- 154 (520)
T ss_dssp -CCSSCCSSC-----CCCGGGGGCTTCCEEEEEESSCCG------------GGGGGGTTSCEEEEEEEECTTTTSS----
T ss_pred -ccCCccccc-----cchhhhccCCcceEEEecCcccch------------hhccccccceeeEEEeecccccccc----
Confidence 222222221 112457889999999999886321 123334455 9999988643 11
Q ss_pred cccccccccCCCcccceEecCCCCCCCCCcc----eeeccccCcCcccccCCCCcccccCCCccEEEEecCc------Cc
Q 046764 763 MQEREDWIPYSSSQEVEFYGNGCLIPFPSLE----TLRFENMQEREDWIPYSSSQEVEVFPNLRDLFLLRCS------KL 832 (1113)
Q Consensus 763 L~~L~~~Lpl~~l~~~~~~g~~~l~~~~~L~----~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~------~L 832 (1113)
. ....++.|+ .+.+.++....... ......+++|+.|++++|. .+
T Consensus 155 ------~---------------~~~~l~~l~~~~l~l~l~~n~~~~~~~----~~~~~~l~~L~~L~l~~n~~~~~~~~~ 209 (520)
T 2z7x_B 155 ------E---------------DPEGLQDFNTESLHIVFPTNKEFHFIL----DVSVKTVANLELSNIKCVLEDNKCSYF 209 (520)
T ss_dssp ------C---------------CTTTTTTCCEEEEEEECCSSSCCCCCC----CCCCTTCSEEEECCEEECCSTTTTHHH
T ss_pred ------c---------------ccccccccccceEEEEeccCcchhhhh----hhhhhcccceeecccccccccccccee
Confidence 0 011233322 33444443222221 3345678999999999973 13
Q ss_pred ccccC--CCCCCccEEEEecccCccccCC------CCCcccEEEEeccCCCCcccCCCccccccccccC-----CCCCCc
Q 046764 833 LGTLP--KHLPSLQKLVIQRCEKLLVDLP------SLPSLNELKLGGCKKGGLQKGQPIIGRRIHYGCA-----DTSSSL 899 (1113)
Q Consensus 833 ~~~lp--~~l~~L~~L~L~~c~~L~~~l~------~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~-----~~l~~L 899 (1113)
.+.+| ..+++|+.|++++|..-...+. ..++|++|++++|...+..+ ..+ ..+++|
T Consensus 210 ~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p-----------~~~~~~~~~~l~~L 278 (520)
T 2z7x_B 210 LSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLD-----------FRDFDYSGTSLKAL 278 (520)
T ss_dssp HHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCC-----------CCCCCCCSCCCCEE
T ss_pred ecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccc-----------cchhhcccccCcee
Confidence 33333 2678999999988742211110 14699999999998764332 233 778888
Q ss_pred ccccccCCCCCcC-cccCCC---CCCceEEEcccCCCcccccccCCCCCcccCCCCccEEEeecCCCCcccCCC--CCcC
Q 046764 900 RVCLQCCNSLTNN-ARVQLP---LSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHILSCPSPTSIFSE--NELP 973 (1113)
Q Consensus 900 ~~L~~~~N~L~~~-~~l~~l---~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~c~~L~~ll~~--~~l~ 973 (1113)
+.++...|.+..+ ..+..+ .+|+.|++++|. +... + ++ ..+++|++|++++|..-.. .+. ..++
T Consensus 279 ~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~-l~~~-~---~~----~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~ 348 (520)
T 2z7x_B 279 SIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR-MVHM-L---CP----SKISPFLHLDFSNNLLTDT-VFENCGHLT 348 (520)
T ss_dssp EEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSC-CCCC-C---CC----SSCCCCCEEECCSSCCCTT-TTTTCCCCS
T ss_pred EeccccccceecchhhhhcccccCceeEEEcCCCc-cccc-c---ch----hhCCcccEEEeECCccChh-hhhhhccCC
Confidence 8887777776422 222222 579999999987 3333 1 11 2789999999999865443 332 2444
Q ss_pred CccCeEEEccccccc--ccc-ccCCCCCCCeEEEEecCCCccccCCC----CCCccEEEEeecCCCCcccccCCCCCCcC
Q 046764 974 ATLQRLEVNSCSKLA--LLT-LSGNLPQGPKYLELTSCSKWESIADN----NTSLQVITVFRCKNLKTLPDGLHKLNNLQ 1046 (1113)
Q Consensus 974 ~sL~~L~i~~c~~L~--~l~-l~~~lp~~L~~L~L~~c~~L~~lp~~----l~sL~~L~Ls~c~~l~~lP~~l~~L~sL~ 1046 (1113)
+|++|+++++.--. .+. ...+++. |+.|++++|.-...+|.. +++|++|++++|...+.+|..+. ++|+
T Consensus 349 -~L~~L~L~~N~l~~l~~~~~~~~~l~~-L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~ 424 (520)
T 2z7x_B 349 -ELETLILQMNQLKELSKIAEMTTQMKS-LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIK 424 (520)
T ss_dssp -SCCEEECCSSCCCBHHHHHHHHTTCTT-CCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCC
T ss_pred -CCCEEEccCCccCccccchHHHhhCCC-CCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCC
Confidence 89999999875322 221 1246677 999999997543337754 79999999999876677777665 7999
Q ss_pred eeee-ccccccccCCCCCCCCcCcEEEeCCCCCccCCCCCCC--CCcCccccccccC
Q 046764 1047 AFTI-CKNLVSFPKGGLPSTQLRDPDITGCQKLEALPDGDLS--STFKTGKSSKCGI 1100 (1113)
Q Consensus 1047 ~L~L-cn~L~slp~~~~~~~sL~~L~l~~C~~L~~l~~~~l~--~sL~~L~~~~c~~ 1100 (1113)
.|++ .|++..+|.....+++|+.|++++| +++.+|...+. ..|+.+++++++.
T Consensus 425 ~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 425 VLDLHSNKIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp EEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EEECCCCcccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCCC
Confidence 9999 9999999987778889999999985 78888875443 3588888888753
No 21
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=4.1e-23 Score=245.08 Aligned_cols=385 Identities=18% Similarity=0.180 Sum_probs=189.5
Q ss_pred CCccccEEecCCCCCcccChhhhccccccEEecccccccccccccccCCCcc-------------eEEEcCCceeccccc
Q 046764 607 DLKHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKL-------------HHLDNFDFCCWKDID 673 (1113)
Q Consensus 607 ~L~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L-------------~~L~L~~~~i~~~~~ 673 (1113)
+.++|++|++++|.+..+|++|++|++|++|++++|.....+|.+++++.+| ++|++++|.+.. .|
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp 87 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CC
T ss_pred ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CC
Confidence 4578999999999999999999999999999999987677899999999987 666666664432 12
Q ss_pred cccccccccccccceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCC-CCCcceEEEe
Q 046764 674 SALQELKLLHLHGALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKP-HQNLERFCIS 752 (1113)
Q Consensus 674 ~~l~~L~L~~L~g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~-~~~L~~L~L~ 752 (1113)
....+|+ .|. +.-+.+..+. ...++|+.|+++.|...+ +.. +++|+.|+++
T Consensus 88 ~~~~~L~--~L~--l~~n~l~~lp----------~~~~~L~~L~l~~n~l~~--------------l~~~~~~L~~L~L~ 139 (454)
T 1jl5_A 88 ELPPHLE--SLV--ASCNSLTELP----------ELPQSLKSLLVDNNNLKA--------------LSDLPPLLEYLGVS 139 (454)
T ss_dssp SCCTTCS--EEE--CCSSCCSSCC----------CCCTTCCEEECCSSCCSC--------------CCSCCTTCCEEECC
T ss_pred CCcCCCC--EEE--ccCCcCCccc----------cccCCCcEEECCCCccCc--------------ccCCCCCCCEEECc
Confidence 1111221 111 1111111110 012455666665543111 111 1456666665
Q ss_pred ccCccccccCcccccccccCCCcccceEecCCCCCCCCCcceeeccccCcCcccccCCCCcccccCCCccEEEEecCcCc
Q 046764 753 GYGETLRFENMQEREDWIPYSSSQEVEFYGNGCLIPFPSLETLRFENMQEREDWIPYSSSQEVEVFPNLRDLFLLRCSKL 832 (1113)
Q Consensus 753 ~~~~~~~l~~L~~L~~~Lpl~~l~~~~~~g~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~L 832 (1113)
++.... + +.+..+++|++|+++++. +.... ..+++|++|++++| .+
T Consensus 140 ~n~l~~----------------l--------p~~~~l~~L~~L~l~~N~-l~~lp--------~~~~~L~~L~L~~n-~l 185 (454)
T 1jl5_A 140 NNQLEK----------------L--------PELQNSSFLKIIDVDNNS-LKKLP--------DLPPSLEFIAAGNN-QL 185 (454)
T ss_dssp SSCCSS----------------C--------CCCTTCTTCCEEECCSSC-CSCCC--------CCCTTCCEEECCSS-CC
T ss_pred CCCCCC----------------C--------cccCCCCCCCEEECCCCc-CcccC--------CCcccccEEECcCC-cC
Confidence 542110 0 124456666666666542 22221 12346666666666 45
Q ss_pred ccccCC--CCCCccEEEEecccCccccCCC-CCcccEEEEeccCCCCcccCCCccccccccccCCCCCCcccccccCCCC
Q 046764 833 LGTLPK--HLPSLQKLVIQRCEKLLVDLPS-LPSLNELKLGGCKKGGLQKGQPIIGRRIHYGCADTSSSLRVCLQCCNSL 909 (1113)
Q Consensus 833 ~~~lp~--~l~~L~~L~L~~c~~L~~~l~~-l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~~l~~L~~L~~~~N~L 909 (1113)
+ .+|. .+++|+.|++++|.-- .++. .++|++|++++|..... + .+..+++|+.|++.+|.+
T Consensus 186 ~-~l~~~~~l~~L~~L~l~~N~l~--~l~~~~~~L~~L~l~~n~l~~l-----------p--~~~~l~~L~~L~l~~N~l 249 (454)
T 1jl5_A 186 E-ELPELQNLPFLTAIYADNNSLK--KLPDLPLSLESIVAGNNILEEL-----------P--ELQNLPFLTTIYADNNLL 249 (454)
T ss_dssp S-SCCCCTTCTTCCEEECCSSCCS--SCCCCCTTCCEEECCSSCCSSC-----------C--CCTTCTTCCEEECCSSCC
T ss_pred C-cCccccCCCCCCEEECCCCcCC--cCCCCcCcccEEECcCCcCCcc-----------c--ccCCCCCCCEEECCCCcC
Confidence 5 3443 4566666666666311 1211 34666666666655431 1 256777788887777777
Q ss_pred CcCcccCCCCCCceEEEcccCCCcccccccCCCCCcccCCCCccEEEeecCCCCcccCCCCCcCCccCeEEEcccccccc
Q 046764 910 TNNARVQLPLSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHILSCPSPTSIFSENELPATLQRLEVNSCSKLAL 989 (1113)
Q Consensus 910 ~~~~~l~~l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~c~~L~~ll~~~~l~~sL~~L~i~~c~~L~~ 989 (1113)
+.... .+++|+.|++++|. ++.+ |. .+++|++|++++|. ++. ++ .++.+|+.|+++++. +..
T Consensus 250 ~~l~~--~~~~L~~L~l~~N~-l~~l-~~---------~~~~L~~L~ls~N~-l~~-l~--~~~~~L~~L~l~~N~-l~~ 311 (454)
T 1jl5_A 250 KTLPD--LPPSLEALNVRDNY-LTDL-PE---------LPQSLTFLDVSENI-FSG-LS--ELPPNLYYLNASSNE-IRS 311 (454)
T ss_dssp SSCCS--CCTTCCEEECCSSC-CSCC-CC---------CCTTCCEEECCSSC-CSE-ES--CCCTTCCEEECCSSC-CSE
T ss_pred Ccccc--cccccCEEECCCCc-cccc-Cc---------ccCcCCEEECcCCc-cCc-cc--CcCCcCCEEECcCCc-CCc
Confidence 72221 24778888888775 4443 21 23678888888764 333 22 244578888887763 332
Q ss_pred ccccCCCCCCCeEEEEecCCCccccCCCCCCccEEEEeecCCCCcccccCCCCCCcCeeee-ccccccc---cCCCCCC-
Q 046764 990 LTLSGNLPQGPKYLELTSCSKWESIADNNTSLQVITVFRCKNLKTLPDGLHKLNNLQAFTI-CKNLVSF---PKGGLPS- 1064 (1113)
Q Consensus 990 l~l~~~lp~~L~~L~L~~c~~L~~lp~~l~sL~~L~Ls~c~~l~~lP~~l~~L~sL~~L~L-cn~L~sl---p~~~~~~- 1064 (1113)
+. .+|..|+.|+++++ .+..+|..+++|++|++++| .++.+|. .+++|++|++ .|.+..+ |.....+
T Consensus 312 i~---~~~~~L~~L~Ls~N-~l~~lp~~~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~ 383 (454)
T 1jl5_A 312 LC---DLPPSLEELNVSNN-KLIELPALPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLR 383 (454)
T ss_dssp EC---CCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEE
T ss_pred cc---CCcCcCCEEECCCC-ccccccccCCcCCEEECCCC-ccccccc---hhhhccEEECCCCCCCcCCCChHHHHhhh
Confidence 22 45555999999985 67778877899999999987 5678887 4789999999 7777764 3333222
Q ss_pred ------------CCcCcEEEeCCCCCccCCCCCCCCCcCcccccccc
Q 046764 1065 ------------TQLRDPDITGCQKLEALPDGDLSSTFKTGKSSKCG 1099 (1113)
Q Consensus 1065 ------------~sL~~L~l~~C~~L~~l~~~~l~~sL~~L~~~~c~ 1099 (1113)
++|+.|++++ +.++.+| .+|.++..|.+.+|.
T Consensus 384 ~n~~~~~i~~~~~~L~~L~ls~-N~l~~~~--~iP~sl~~L~~~~~~ 427 (454)
T 1jl5_A 384 MNSHLAEVPELPQNLKQLHVET-NPLREFP--DIPESVEDLRMNSER 427 (454)
T ss_dssp CCC--------------------------------------------
T ss_pred hcccccccccccCcCCEEECCC-CcCCccc--cchhhHhheeCcCcc
Confidence 5788888887 4455443 367778888877764
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=8.1e-23 Score=250.32 Aligned_cols=402 Identities=17% Similarity=0.121 Sum_probs=207.8
Q ss_pred CCeeEEccCCcC-------CCCCCccccEEecCCCCCccc-ChhhhccccccEEecccccccccccccccCCCcceEEEc
Q 046764 592 ENLQTFLPTTVS-------HGGDLKHLRHLDLSETDIQIL-PESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDN 663 (1113)
Q Consensus 592 ~~Lr~L~~~~~~-------~i~~L~~Lr~L~Ls~~~i~~L-P~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L 663 (1113)
++++.|.+.++. .|+++++|++|+|++|.++.+ |..|+++++|++|+|++| .+..+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc--ccccCCEEEC
Confidence 567777766654 567777777777777777766 566777777777777774 56677766 6777777777
Q ss_pred CCceecc-cccccccccc-ccccccceeeccccCccChhhHHHhhcCCCccc--ceEEeeecCC--CCCCCCchhhHhhh
Q 046764 664 FDFCCWK-DIDSALQELK-LLHLHGALEISKLENVRDASEAGEAQLNGKKNL--KTLLLQRTSN--NGDSREPEIETHVL 737 (1113)
Q Consensus 664 ~~~~i~~-~~~~~l~~L~-L~~L~g~L~i~~l~~~~~~~~~~~~~l~~l~~L--~~L~L~~~~~--~~~~~~~~~~~~~l 737 (1113)
++|.+.. ..|..+.++. |++|. +.-+.+.. ..+..+++| +.|+++.|.. .+... ..+
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~--L~~n~l~~---------~~~~~l~~L~L~~L~L~~n~l~~~~~~~------~~l 191 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLG--LSAAKFRQ---------LDLLPVAHLHLSCILLDLVSYHIKGGET------ESL 191 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEE--EECSBCCT---------TTTGGGTTSCEEEEEEEESSCCCCSSSC------CEE
T ss_pred CCCCccccCchHhhcccCcccEEe--cCCCcccc---------CchhhhhhceeeEEEeecccccccccCc------ccc
Confidence 7776644 2245555555 55443 22222221 012233333 6666666643 11100 001
Q ss_pred ccCC-----------------------CCCCcceEEEeccCccccccCcccccccccCCCcccceEecCCCCCCCCCcce
Q 046764 738 DMLK-----------------------PHQNLERFCISGYGETLRFENMQEREDWIPYSSSQEVEFYGNGCLIPFPSLET 794 (1113)
Q Consensus 738 ~~L~-----------------------~~~~L~~L~L~~~~~~~~l~~L~~L~~~Lpl~~l~~~~~~g~~~l~~~~~L~~ 794 (1113)
..+. .+++|+.|+++++.... ..+.+.+ ..+..+++|+.
T Consensus 192 ~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-----~~l~~~~-------------~~l~~l~~L~~ 253 (562)
T 3a79_B 192 QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENC-----QRLMTFL-------------SELTRGPTLLN 253 (562)
T ss_dssp EECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTH-----HHHHHHH-------------HHHHSCSSCEE
T ss_pred cccCcceEEEEecCccchhhhhhhcccccceEEEeccccccccc-----chHHHHH-------------HHHhccCcceE
Confidence 1110 11112222222110000 0000000 01122344444
Q ss_pred eeccccCcCcccccCCCCcccccCCCccEEEEecCcCcccccCCCC-----CCccEEEEecccCccccCCC--------C
Q 046764 795 LRFENMQEREDWIPYSSSQEVEVFPNLRDLFLLRCSKLLGTLPKHL-----PSLQKLVIQRCEKLLVDLPS--------L 861 (1113)
Q Consensus 795 L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~lp~~l-----~~L~~L~L~~c~~L~~~l~~--------l 861 (1113)
|.+.++.-....... .+ .....++|++|++++| .+.+.+|..+ ++|+.|.+.++..-...++. -
T Consensus 254 L~L~~~~l~~~~~~~-~~-~~~~~~~L~~L~l~~n-~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~ 330 (562)
T 3a79_B 254 VTLQHIETTWKCSVK-LF-QFFWPRPVEYLNIYNL-TITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAE 330 (562)
T ss_dssp EEEEEEEECHHHHHH-HH-HHHTTSSEEEEEEEEE-EECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHT
T ss_pred EEecCCcCcHHHHHH-HH-HhhhcccccEEEEecc-EeeccccchhhhcccccchheehhhcccceeecChhhhhhhhcc
Confidence 444432110000000 00 0012236666666666 4555555544 55666555544211111110 1
Q ss_pred CcccEEEEeccCCCCcccCCCccccccccccCCCCCCcccccccCCCCC--cCcccCCCCCCceEEEcccCCCccccccc
Q 046764 862 PSLNELKLGGCKKGGLQKGQPIIGRRIHYGCADTSSSLRVCLQCCNSLT--NNARVQLPLSLKDLSIAFCDNLRTLVEEE 939 (1113)
Q Consensus 862 ~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~~l~~L~~L~~~~N~L~--~~~~l~~l~~L~~L~Ls~c~~L~~l~~~~ 939 (1113)
++|++|++++|...... ....+++|++|++.+|.+. .+..+..+++|+.|++++|. ++.+ +.
T Consensus 331 ~~L~~L~l~~n~~~~~~-------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~-~~- 394 (562)
T 3a79_B 331 MNIKMLSISDTPFIHMV-------------CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNF-FK- 394 (562)
T ss_dssp CCCSEEEEESSCCCCCC-------------CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBT-TH-
T ss_pred CcceEEEccCCCccccc-------------CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCc-cc-
Confidence 34666777666553311 1245566666666666665 34555666666666666654 4432 11
Q ss_pred CCCCCcccCCCCccEEEeecCCCCcccCCCCCcCCccCeEEEccccccccccccCCCCCCCeEEEEecCCCccccCCCC-
Q 046764 940 GIPKGSRKYSSHLECLHILSCPSPTSIFSENELPATLQRLEVNSCSKLALLTLSGNLPQGPKYLELTSCSKWESIADNN- 1018 (1113)
Q Consensus 940 ~lp~~l~~~l~~L~~L~L~~c~~L~~ll~~~~l~~sL~~L~i~~c~~L~~l~l~~~lp~~L~~L~L~~c~~L~~lp~~l- 1018 (1113)
+|..+ ..+++|++|++++|..... ++... ...++. |+.|++++|.--..+|..+
T Consensus 395 -~~~~~-~~l~~L~~L~l~~N~l~~~-~~~~~---------------------~~~l~~-L~~L~l~~n~l~~~~~~~l~ 449 (562)
T 3a79_B 395 -VALMT-KNMSSLETLDVSLNSLNSH-AYDRT---------------------CAWAES-ILVLNLSSNMLTGSVFRCLP 449 (562)
T ss_dssp -HHHTT-TTCTTCCEEECTTSCCBSC-CSSCC---------------------CCCCTT-CCEEECCSSCCCGGGGSSCC
T ss_pred -chhhh-cCCCCCCEEECCCCcCCCc-cChhh---------------------hcCccc-CCEEECCCCCCCcchhhhhc
Confidence 11112 2556666666665542221 11110 112333 7777777764444555554
Q ss_pred CCccEEEEeecCCCCcccccCCCCCCcCeeee-ccccccccCC-CCCCCCcCcEEEeCCC
Q 046764 1019 TSLQVITVFRCKNLKTLPDGLHKLNNLQAFTI-CKNLVSFPKG-GLPSTQLRDPDITGCQ 1076 (1113)
Q Consensus 1019 ~sL~~L~Ls~c~~l~~lP~~l~~L~sL~~L~L-cn~L~slp~~-~~~~~sL~~L~l~~C~ 1076 (1113)
++|+.|++++| .++.+|.++..+++|+.|++ .|++..+|.. ...+++|+.|++++++
T Consensus 450 ~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 450 PKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred CcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCC
Confidence 68888888886 57788888888888888888 8888888876 4456788888888765
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.89 E-value=6.1e-22 Score=246.04 Aligned_cols=124 Identities=18% Similarity=0.162 Sum_probs=90.6
Q ss_pred CCeeEEccCCcC-------CCCCCccccEEecCCCCCcccC-hhhhccccccEEeccccccccccccc-ccCCCcceEEE
Q 046764 592 ENLQTFLPTTVS-------HGGDLKHLRHLDLSETDIQILP-ESVNTLYNLRMLMLQKCNQLEKMCSD-MGNLLKLHHLD 662 (1113)
Q Consensus 592 ~~Lr~L~~~~~~-------~i~~L~~Lr~L~Ls~~~i~~LP-~~i~~L~~L~~LdL~~c~~l~~LP~~-i~~L~~L~~L~ 662 (1113)
+.++.|.+.++. +|.++++|++|+|++|+|+.+| ..|++|++|++|+|++| .+..+|.+ |++|++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEE
Confidence 367888887764 6888999999999999998885 46888999999999985 67777754 68899999999
Q ss_pred cCCceecccccccccccc-ccccccceeeccccCccChhhHHHhhcCCCcccceEEeeecCC
Q 046764 663 NFDFCCWKDIDSALQELK-LLHLHGALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSN 723 (1113)
Q Consensus 663 L~~~~i~~~~~~~l~~L~-L~~L~g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 723 (1113)
+++|.+....+..+++|. |+.|. +.-+.+.... .+..+..+++|+.|+++.|..
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~--Ls~N~l~~~~-----~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELN--VAHNLIQSFK-----LPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEE--CCSSCCCCCC-----CCGGGGGCTTCCEEECCSSCC
T ss_pred CCCCcCCCCChhhhhcCcccCeec--cccCccccCC-----CchhhccchhhhhhcccCccc
Confidence 998877665555677777 66665 3333332221 123466788888888887763
No 24
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.89 E-value=1.7e-23 Score=280.82 Aligned_cols=182 Identities=23% Similarity=0.381 Sum_probs=153.2
Q ss_pred CCHHHHHHHHHHHhcCc--EEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEecCChhhHhh-hCCCceEecCC-CCH
Q 046764 363 DELGLLQEKLKNQMSGK--KFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTTRNRDVAAI-MGSVRDYPLKE-STK 438 (1113)
Q Consensus 363 ~~~~~l~~~l~~~L~~k--r~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTTR~~~va~~-~~~~~~~~l~~-L~~ 438 (1113)
.+.+.+...++..+.+| |+||||||||+. .+|+.+ .+|||||||||++.|+.. ++....+++++ |++
T Consensus 218 ~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~~-------~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~ 288 (1249)
T 3sfz_A 218 LNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKAF-------DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGR 288 (1249)
T ss_dssp SSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTTT-------CSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCH
T ss_pred CCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHhh-------cCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCH
Confidence 45677888888888877 999999999987 667654 579999999999999965 45567899996 999
Q ss_pred HHHHHHHHhcccCCCCCCCchhHHHHHHHHHHHhCCChHHHHHHHhhhcCCCCc--------------------------
Q 046764 439 DDCLQVFTQHCLGMRDFSMQQSLKDISKKIVIRCNGLPLAAKTLAGLLRGKNDP-------------------------- 492 (1113)
Q Consensus 439 ~~s~~LF~~~af~~~~~~~~~~l~~i~~~I~~~c~GlPLAi~~ig~~L~~~~~~-------------------------- 492 (1113)
++||+||...++... +.+.+++.+|+++|+|+||||+++|+.|+.++..
T Consensus 289 ~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 363 (1249)
T 3sfz_A 289 EKGLEILSLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEA 363 (1249)
T ss_dssp HHHHHHHHHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSSCHHHHHHHHHSCCCCCSSCTTCTTHHH
T ss_pred HHHHHHHHHhhCCCh-----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChhHHHHHHHHHhhhhhhhcccccccchHH
Confidence 999999999884322 3445679999999999999999999999864421
Q ss_pred ------------------ccccccccccccCcCCcccchhhHHHHHHHHcCCCccCCchhhHHHHHHHHHHHHHhCCCcc
Q 046764 493 ------------------RFSACSIARYGIYQKNYEFHEEEEVTLLWMAEGFPYHIDTKEEIQDLGHKFFHELYSRSSFQ 554 (1113)
Q Consensus 493 ------------------cfly~~~~~~~~fp~~~~i~~~~~Li~~Wiaegfi~~~~~~~~~e~~~~~~~~~Lv~rsli~ 554 (1113)
||+||+ +||+++.|++ +.++.+|.++ ++.++.++++|+++||++
T Consensus 364 ~~~~l~~s~~~L~~~~~~~~~~l~-----~f~~~~~i~~-~~~~~~~~~~------------~~~~~~~l~~L~~~sl~~ 425 (1249)
T 3sfz_A 364 LDEAMSISVEMLREDIKDYYTDLS-----ILQKDVKVPT-KVLCVLWDLE------------TEEVEDILQEFVNKSLLF 425 (1249)
T ss_dssp HHHHHHHHHHTSCTTTHHHHHHGG-----GSCTTCCEEH-HHHHHHHTCC------------HHHHHHHHHHHHHTTSCE
T ss_pred HHHHHHHHHHhCCHHHHHHHHHhC-----ccCCCCeeCH-HHHHHHhCCC------------HHHHHHHHHHHHhccceE
Confidence 999999 9999999999 9999999654 366789999999999999
Q ss_pred ccCC-CCCceeechHHHHHHHHh
Q 046764 555 QSSS-DPCRFLMHDLINDLAQWA 576 (1113)
Q Consensus 555 ~~~~-~~~~~~mHdlv~d~~~~i 576 (1113)
...+ ...+|+|||++|++++..
T Consensus 426 ~~~~~~~~~~~~h~l~~~~~~~~ 448 (1249)
T 3sfz_A 426 CNRNGKSFCYYLHDLQVDFLTEK 448 (1249)
T ss_dssp EEESSSSEEEECCHHHHHHHHHH
T ss_pred EecCCCceEEEecHHHHHHHHhh
Confidence 7643 344699999999999877
No 25
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=1.4e-22 Score=255.85 Aligned_cols=366 Identities=14% Similarity=0.128 Sum_probs=221.3
Q ss_pred ccccccCCCcceEEEcCCceeccc-cccccccccccccccceeeccccCccChhhHHHhhcC--CCcccceEEeeecCCC
Q 046764 648 MCSDMGNLLKLHHLDNFDFCCWKD-IDSALQELKLLHLHGALEISKLENVRDASEAGEAQLN--GKKNLKTLLLQRTSNN 724 (1113)
Q Consensus 648 LP~~i~~L~~L~~L~L~~~~i~~~-~~~~l~~L~L~~L~g~L~i~~l~~~~~~~~~~~~~l~--~l~~L~~L~L~~~~~~ 724 (1113)
+|..+++|++|++|++++|.+... .+.....+ .. ......++..++ ++++|+.|+++.|...
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~--------------s~-n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~ 504 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDA--------------NS-DYAKQYENEELSWSNLKDLTDVELYNCPNM 504 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT--------------TS-HHHHHHTTSCCCGGGCTTCCEEEEESCTTC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCccccccccc--------------cc-ccccccCChhhhhccCCCCCEEECcCCCCC
Confidence 677777777777777777654331 11000000 00 011122344556 8889999999887633
Q ss_pred CCCCCchhhHhhhccCCCCCCcceEEEeccC-ccc-ccc-CcccccccccCCCcccceEecCCCCCCCCCcceeeccccC
Q 046764 725 GDSREPEIETHVLDMLKPHQNLERFCISGYG-ETL-RFE-NMQEREDWIPYSSSQEVEFYGNGCLIPFPSLETLRFENMQ 801 (1113)
Q Consensus 725 ~~~~~~~~~~~~l~~L~~~~~L~~L~L~~~~-~~~-~l~-~L~~L~~~Lpl~~l~~~~~~g~~~l~~~~~L~~L~L~~~~ 801 (1113)
+. .+..+..+++|+.|+++++. ... .++ .+..+. ..+..+++|+.|+++++.
T Consensus 505 ~~---------iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~----------------~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 505 TQ---------LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLA----------------DDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp CS---------CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHH----------------HCTTTTTTCCEEECCSSC
T ss_pred cc---------ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhh----------------hcccccCCccEEEeeCCc
Confidence 22 34556677888888888764 110 000 011110 133456788888888764
Q ss_pred cCcccccCCCCc--ccccCCCccEEEEecCcCcccccCC--CCCCccEEEEeccc--CccccCCCCCc-ccEEEEeccCC
Q 046764 802 EREDWIPYSSSQ--EVEVFPNLRDLFLLRCSKLLGTLPK--HLPSLQKLVIQRCE--KLLVDLPSLPS-LNELKLGGCKK 874 (1113)
Q Consensus 802 ~l~~~~~~~~~~--~~~~~~~L~~L~L~~c~~L~~~lp~--~l~~L~~L~L~~c~--~L~~~l~~l~~-L~~L~L~~~~~ 874 (1113)
-. . ++. .++.+++|+.|++++| .+. .+|. .+++|+.|++++|. .++..+..+++ |+.|++++|..
T Consensus 560 L~-~-----ip~~~~l~~L~~L~~L~Ls~N-~l~-~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L 631 (876)
T 4ecn_A 560 LE-E-----FPASASLQKMVKLGLLDCVHN-KVR-HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKL 631 (876)
T ss_dssp CC-B-----CCCHHHHTTCTTCCEEECTTS-CCC-BCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCC
T ss_pred CC-c-----cCChhhhhcCCCCCEEECCCC-Ccc-cchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCC
Confidence 22 2 233 4567888888888887 566 6662 45677777777774 33334445666 88888888776
Q ss_pred CCcccCCCccccccccccCCCCC--CcccccccCCCCC-cCcc----cC--CCCCCceEEEcccCCCcccccccCCCCCc
Q 046764 875 GGLQKGQPIIGRRIHYGCADTSS--SLRVCLQCCNSLT-NNAR----VQ--LPLSLKDLSIAFCDNLRTLVEEEGIPKGS 945 (1113)
Q Consensus 875 ~~~~~~~~l~~l~l~~~~~~~l~--~L~~L~~~~N~L~-~~~~----l~--~l~~L~~L~Ls~c~~L~~l~~~~~lp~~l 945 (1113)
...+ ..+..++ +|+.|++..|.+. .... +. .+++|+.|++++|. +..+ |..+
T Consensus 632 ~~lp------------~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~l------p~~~ 692 (876)
T 4ecn_A 632 KYIP------------NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKF------PTEL 692 (876)
T ss_dssp CSCC------------SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSC------CHHH
T ss_pred CcCc------------hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc-CCcc------CHHH
Confidence 5321 2333333 3777777776665 1111 11 33467777777765 3333 3333
Q ss_pred ccCCCCccEEEeecCCCCcccCCCCCcCCccCeEEEccccccccccccCCCCCCCeEEEEecCCCccccCCC-----CCC
Q 046764 946 RKYSSHLECLHILSCPSPTSIFSENELPATLQRLEVNSCSKLALLTLSGNLPQGPKYLELTSCSKWESIADN-----NTS 1020 (1113)
Q Consensus 946 ~~~l~~L~~L~L~~c~~L~~ll~~~~l~~sL~~L~i~~c~~L~~l~l~~~lp~~L~~L~L~~c~~L~~lp~~-----l~s 1020 (1113)
...+++|+.|++++|. +.. +|...+.. + ...|. +++. |+.|++++| .+..+|.. +++
T Consensus 693 ~~~l~~L~~L~Ls~N~-L~~-ip~~~~~~-~----~~~l~---------nl~~-L~~L~Ls~N-~L~~lp~~l~~~~l~~ 754 (876)
T 4ecn_A 693 FATGSPISTIILSNNL-MTS-IPENSLKP-K----DGNYK---------NTYL-LTTIDLRFN-KLTSLSDDFRATTLPY 754 (876)
T ss_dssp HHTTCCCSEEECCSCC-CSC-CCTTSSSC-T----TSCCT---------TGGG-CCEEECCSS-CCCCCCGGGSTTTCTT
T ss_pred HccCCCCCEEECCCCc-CCc-cChHHhcc-c----ccccc---------ccCC-ccEEECCCC-CCccchHHhhhccCCC
Confidence 2356777777777653 333 33222110 0 00011 1223 777777776 55566643 689
Q ss_pred ccEEEEeecCCCCcccccCCCCCCcCeeee-c------ccc-ccccCCCCCCCCcCcEEEeCCCCCccCCCCCCCCCcCc
Q 046764 1021 LQVITVFRCKNLKTLPDGLHKLNNLQAFTI-C------KNL-VSFPKGGLPSTQLRDPDITGCQKLEALPDGDLSSTFKT 1092 (1113)
Q Consensus 1021 L~~L~Ls~c~~l~~lP~~l~~L~sL~~L~L-c------n~L-~slp~~~~~~~sL~~L~l~~C~~L~~l~~~~l~~sL~~ 1092 (1113)
|+.|+|++|. +..+|..+..+++|+.|+| . |++ ..+|.....+++|+.|++++|. +..+|.. +...|+.
T Consensus 755 L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~-l~~~L~~ 831 (876)
T 4ecn_A 755 LSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEK-LTPQLYI 831 (876)
T ss_dssp CCEEECCSSC-CSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC-CCSSSCE
T ss_pred cCEEEeCCCC-CCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-CCccCHh-hcCCCCE
Confidence 9999999975 5669999999999999999 4 443 4677666677899999999965 5999986 4468999
Q ss_pred cccccccCC
Q 046764 1093 GKSSKCGIF 1101 (1113)
Q Consensus 1093 L~~~~c~~l 1101 (1113)
|++++|+..
T Consensus 832 LdLs~N~l~ 840 (876)
T 4ecn_A 832 LDIADNPNI 840 (876)
T ss_dssp EECCSCTTC
T ss_pred EECCCCCCC
Confidence 999999753
No 26
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.88 E-value=4.8e-23 Score=252.75 Aligned_cols=171 Identities=17% Similarity=0.269 Sum_probs=138.1
Q ss_pred HHHHHHHHHHh---cCcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEecCChhhHhhhCCCceEecC------CC
Q 046764 366 GLLQEKLKNQM---SGKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTTRNRDVAAIMGSVRDYPLK------ES 436 (1113)
Q Consensus 366 ~~l~~~l~~~L---~~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTTR~~~va~~~~~~~~~~l~------~L 436 (1113)
+.+...+++.| .+||+||||||||+. +.|+.+ + +|||||||||++.++..+....+|+++ +|
T Consensus 228 eeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~L 298 (1221)
T 1vt4_I 228 HSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298 (1221)
T ss_dssp HHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCC
T ss_pred HHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh----C---CCeEEEEeccChHHHHhcCCCeEEEecCccccCCc
Confidence 34556667665 689999999999997 788764 2 699999999999999765444467777 99
Q ss_pred CHHHHHHHHHhcccCCCCCCCchhHHHHHHHHHHHhCCChHHHHHHHhhhcCCCCc------------------------
Q 046764 437 TKDDCLQVFTQHCLGMRDFSMQQSLKDISKKIVIRCNGLPLAAKTLAGLLRGKNDP------------------------ 492 (1113)
Q Consensus 437 ~~~~s~~LF~~~af~~~~~~~~~~l~~i~~~I~~~c~GlPLAi~~ig~~L~~~~~~------------------------ 492 (1113)
+.+|||+||+++ ++... .++..+| |+|+||||+++|+.|+.+...
T Consensus 299 S~eEA~eLF~~~-~g~~~-------eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~~~~~I~aaLelSYd~Lp 367 (1221)
T 1vt4_I 299 TPDEVKSLLLKY-LDCRP-------QDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367 (1221)
T ss_dssp CHHHHHHHHHHH-HCCCT-------TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHCSCHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHH-cCCCH-------HHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcCChhHHHHHHHHHHHhCC
Confidence 999999999998 44321 1233333 999999999999999887321
Q ss_pred ------ccccccccccccCcCCcccchhhHHHHHHHHcCCCccCCchhhHHHHHHHHHHHHHhCCCccccCCCCCceeec
Q 046764 493 ------RFSACSIARYGIYQKNYEFHEEEEVTLLWMAEGFPYHIDTKEEIQDLGHKFFHELYSRSSFQQSSSDPCRFLMH 566 (1113)
Q Consensus 493 ------cfly~~~~~~~~fp~~~~i~~~~~Li~~Wiaegfi~~~~~~~~~e~~~~~~~~~Lv~rsli~~~~~~~~~~~mH 566 (1113)
||+||| +||+++.|.+ +.++.+|+++| ++.++.++++|+++|||+.. ++..+|+||
T Consensus 368 ~eelK~cFL~LA-----IFPed~~I~~-elLa~LW~aeG-----------eedAe~~L~eLvdRSLLq~d-~~~~rYrMH 429 (1221)
T 1vt4_I 368 PAEYRKMFDRLS-----VFPPSAHIPT-ILLSLIWFDVI-----------KSDVMVVVNKLHKYSLVEKQ-PKESTISIP 429 (1221)
T ss_dssp TTHHHHHHHHTT-----SSCTTSCEEH-HHHHHHHCSSC-----------SHHHHHHHHHHHTSSSSSBC-SSSSEEBCC
T ss_pred HHHHHHHHHHHh-----CCCCCCCCCH-HHHHHHhcCCC-----------HHHHHHHHHHHHhhCCEEEe-CCCCEEEeh
Confidence 999999 9999999999 99999999887 13478899999999999985 345689999
Q ss_pred hHHHHHHH
Q 046764 567 DLINDLAQ 574 (1113)
Q Consensus 567 dlv~d~~~ 574 (1113)
|++++++.
T Consensus 430 DLllELr~ 437 (1221)
T 1vt4_I 430 SIYLELKV 437 (1221)
T ss_dssp CHHHHHHH
T ss_pred HHHHHHhc
Confidence 99999663
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=2.4e-21 Score=231.57 Aligned_cols=338 Identities=16% Similarity=0.177 Sum_probs=200.4
Q ss_pred CCCeeEEccCCcC-----CCCCCccccEEecCCCCCcccChhhhccccccEEecccccccccccccccCCCcceEEEcCC
Q 046764 591 FENLQTFLPTTVS-----HGGDLKHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNFD 665 (1113)
Q Consensus 591 l~~Lr~L~~~~~~-----~i~~L~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~~ 665 (1113)
++++|+|.+.+.. .+..+++|++|+|++|.++.+|. ++++++|++|++++| .+..+|. ++++++|++|++++
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~ 121 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTLFN 121 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCS
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCC-ccccChh-hcCCCCCCEEECCC
Confidence 4556666555443 45567777777777777777765 777777777777774 4555555 77777777777776
Q ss_pred ceeccccccccccccccccccceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCCCCC
Q 046764 666 FCCWKDIDSALQELKLLHLHGALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKPHQN 745 (1113)
Q Consensus 666 ~~i~~~~~~~l~~L~L~~L~g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~ 745 (1113)
|.+.... .+..+++|+.|++++|...+ +..+..+++
T Consensus 122 n~l~~~~---------------------------------~~~~l~~L~~L~l~~n~l~~-----------~~~~~~l~~ 157 (466)
T 1o6v_A 122 NQITDID---------------------------------PLKNLTNLNRLELSSNTISD-----------ISALSGLTS 157 (466)
T ss_dssp SCCCCCG---------------------------------GGTTCTTCSEEEEEEEEECC-----------CGGGTTCTT
T ss_pred CCCCCCh---------------------------------HHcCCCCCCEEECCCCccCC-----------ChhhccCCc
Confidence 6432111 14556677777776664211 123555666
Q ss_pred cceEEEeccCccccccCcccccccccCCCcccceEecCCCCCCCCCcceeeccccCcCcccccCCCCcccccCCCccEEE
Q 046764 746 LERFCISGYGETLRFENMQEREDWIPYSSSQEVEFYGNGCLIPFPSLETLRFENMQEREDWIPYSSSQEVEVFPNLRDLF 825 (1113)
Q Consensus 746 L~~L~L~~~~~~~~l~~L~~L~~~Lpl~~l~~~~~~g~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~ 825 (1113)
|+.|++.+.... + ..+..+++|+.|+++++. +..+. ....+++|+.|+
T Consensus 158 L~~L~l~~~~~~--------~-----------------~~~~~l~~L~~L~l~~n~-l~~~~------~l~~l~~L~~L~ 205 (466)
T 1o6v_A 158 LQQLSFGNQVTD--------L-----------------KPLANLTTLERLDISSNK-VSDIS------VLAKLTNLESLI 205 (466)
T ss_dssp CSEEEEEESCCC--------C-----------------GGGTTCTTCCEEECCSSC-CCCCG------GGGGCTTCSEEE
T ss_pred ccEeecCCcccC--------c-----------------hhhccCCCCCEEECcCCc-CCCCh------hhccCCCCCEEE
Confidence 777766431100 0 123456677777777653 22211 245677777777
Q ss_pred EecCcCcccccC-CCCCCccEEEEecccCcc-ccCCCCCcccEEEEeccCCCCcccCCCccccccccccCCCCCCccccc
Q 046764 826 LLRCSKLLGTLP-KHLPSLQKLVIQRCEKLL-VDLPSLPSLNELKLGGCKKGGLQKGQPIIGRRIHYGCADTSSSLRVCL 903 (1113)
Q Consensus 826 L~~c~~L~~~lp-~~l~~L~~L~L~~c~~L~-~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~~l~~L~~L~ 903 (1113)
+++| .+.+..| ..+++|+.|++++|..-. ..+..+++|+.|++++|...... .+..+++|+.|.
T Consensus 206 l~~n-~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~-------------~~~~l~~L~~L~ 271 (466)
T 1o6v_A 206 ATNN-QISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA-------------PLSGLTKLTELK 271 (466)
T ss_dssp CCSS-CCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG-------------GGTTCTTCSEEE
T ss_pred ecCC-cccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccch-------------hhhcCCCCCEEE
Confidence 7777 4442222 356677777777763111 13445777788888777765422 245666777776
Q ss_pred ccCCCCCcCcccCCCCCCceEEEcccCCCcccccccCCCCCcccCCCCccEEEeecCCCCcccCCCCCcCCccCeEEEcc
Q 046764 904 QCCNSLTNNARVQLPLSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHILSCPSPTSIFSENELPATLQRLEVNS 983 (1113)
Q Consensus 904 ~~~N~L~~~~~l~~l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~c~~L~~ll~~~~l~~sL~~L~i~~ 983 (1113)
+.+|.+.....+..+++|+.|++++|. +..+ +. + ..+++|+.|++++|. +..+.+..
T Consensus 272 l~~n~l~~~~~~~~l~~L~~L~L~~n~-l~~~-~~------~-~~l~~L~~L~L~~n~-l~~~~~~~------------- 328 (466)
T 1o6v_A 272 LGANQISNISPLAGLTALTNLELNENQ-LEDI-SP------I-SNLKNLTYLTLYFNN-ISDISPVS------------- 328 (466)
T ss_dssp CCSSCCCCCGGGTTCTTCSEEECCSSC-CSCC-GG------G-GGCTTCSEEECCSSC-CSCCGGGG-------------
T ss_pred CCCCccCccccccCCCccCeEEcCCCc-ccCc-hh------h-cCCCCCCEEECcCCc-CCCchhhc-------------
Confidence 666666633336667777777777765 4443 21 2 266777777777663 22212211
Q ss_pred ccccccccccCCCCCCCeEEEEecCCCccccCCC--CCCccEEEEeecCCCCcccccCCCCCCcCeeee-ccccccccC
Q 046764 984 CSKLALLTLSGNLPQGPKYLELTSCSKWESIADN--NTSLQVITVFRCKNLKTLPDGLHKLNNLQAFTI-CKNLVSFPK 1059 (1113)
Q Consensus 984 c~~L~~l~l~~~lp~~L~~L~L~~c~~L~~lp~~--l~sL~~L~Ls~c~~l~~lP~~l~~L~sL~~L~L-cn~L~slp~ 1059 (1113)
.++. |+.|++++| .+..++.- +++|+.|++++|......| +..+++|+.|++ .+.+..+|.
T Consensus 329 -----------~l~~-L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~p~ 392 (466)
T 1o6v_A 329 -----------SLTK-LQRLFFYNN-KVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPV 392 (466)
T ss_dssp -----------GCTT-CCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECCCB
T ss_pred -----------cCcc-CCEeECCCC-ccCCchhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCCch
Confidence 2233 555555554 33333322 6889999999876444434 888899999999 777777664
No 28
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=1.1e-21 Score=233.14 Aligned_cols=61 Identities=16% Similarity=0.151 Sum_probs=49.3
Q ss_pred CCCCCccccEEecCCCCCcccChhhhccccccEEecccccccccccccccCCCcceEEEcCCcee
Q 046764 604 HGGDLKHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNFDFCC 668 (1113)
Q Consensus 604 ~i~~L~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~~~~i 668 (1113)
.++++++|++|+|++|.++.+| .++.+++|++|++++| .+..+| ++.+++|++|++++|.+
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N~l 97 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSNKL 97 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSCC
T ss_pred ChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCCCC
Confidence 4567788888888888888887 6888888999998885 566675 78888888888888754
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.87 E-value=1e-21 Score=233.08 Aligned_cols=381 Identities=21% Similarity=0.202 Sum_probs=234.5
Q ss_pred CCCeeEEccCCcC------CCCCCccccEEecCCCCCc-ccChhhhccccc-------------cEEecccccccccccc
Q 046764 591 FENLQTFLPTTVS------HGGDLKHLRHLDLSETDIQ-ILPESVNTLYNL-------------RMLMLQKCNQLEKMCS 650 (1113)
Q Consensus 591 l~~Lr~L~~~~~~------~i~~L~~Lr~L~Ls~~~i~-~LP~~i~~L~~L-------------~~LdL~~c~~l~~LP~ 650 (1113)
.++||.|.+.++. +|+++++|++|++++|.+. .+|.+++++++| ++|++++| .+..+|.
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~lp~ 88 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSLPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCCCS
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccccCCC
Confidence 4667777665554 6889999999999999887 789999988875 88999985 5777776
Q ss_pred cccCCCcceEEEcCCceeccccccccccccccccccceeeccccCccChhhHHHhhcCCC-cccceEEeeecCCCCCCCC
Q 046764 651 DMGNLLKLHHLDNFDFCCWKDIDSALQELKLLHLHGALEISKLENVRDASEAGEAQLNGK-KNLKTLLLQRTSNNGDSRE 729 (1113)
Q Consensus 651 ~i~~L~~L~~L~L~~~~i~~~~~~~l~~L~L~~L~g~L~i~~l~~~~~~~~~~~~~l~~l-~~L~~L~L~~~~~~~~~~~ 729 (1113)
. .++|++|++++|.+.. .|..+..|+ .|. +.-+.+.. +... ++|+.|+++.|...+
T Consensus 89 ~---~~~L~~L~l~~n~l~~-lp~~~~~L~--~L~--l~~n~l~~-----------l~~~~~~L~~L~L~~n~l~~---- 145 (454)
T 1jl5_A 89 L---PPHLESLVASCNSLTE-LPELPQSLK--SLL--VDNNNLKA-----------LSDLPPLLEYLGVSNNQLEK---- 145 (454)
T ss_dssp C---CTTCSEEECCSSCCSS-CCCCCTTCC--EEE--CCSSCCSC-----------CCSCCTTCCEEECCSSCCSS----
T ss_pred C---cCCCCEEEccCCcCCc-cccccCCCc--EEE--CCCCccCc-----------ccCCCCCCCEEECcCCCCCC----
Confidence 3 4689999999987754 454444443 222 11122222 1122 689999998876321
Q ss_pred chhhHhhhccCCCCCCcceEEEeccCccccccCcccccccccCCCcccceEecCCCCCCCCCcceeeccccCcCcccccC
Q 046764 730 PEIETHVLDMLKPHQNLERFCISGYGETLRFENMQEREDWIPYSSSQEVEFYGNGCLIPFPSLETLRFENMQEREDWIPY 809 (1113)
Q Consensus 730 ~~~~~~~l~~L~~~~~L~~L~L~~~~~~~~l~~L~~L~~~Lpl~~l~~~~~~g~~~l~~~~~L~~L~L~~~~~l~~~~~~ 809 (1113)
+..+..+++|+.|+++++.... +| ..+++|+.|+++++. +...
T Consensus 146 -------lp~~~~l~~L~~L~l~~N~l~~-----------lp---------------~~~~~L~~L~L~~n~-l~~l--- 188 (454)
T 1jl5_A 146 -------LPELQNSSFLKIIDVDNNSLKK-----------LP---------------DLPPSLEFIAAGNNQ-LEEL--- 188 (454)
T ss_dssp -------CCCCTTCTTCCEEECCSSCCSC-----------CC---------------CCCTTCCEEECCSSC-CSSC---
T ss_pred -------CcccCCCCCCCEEECCCCcCcc-----------cC---------------CCcccccEEECcCCc-CCcC---
Confidence 2247788999999998864211 01 124589999999863 3322
Q ss_pred CCCcccccCCCccEEEEecCcCcccccCCCCCCccEEEEeccc--CccccCCCCCcccEEEEeccCCCCcccCCCccccc
Q 046764 810 SSSQEVEVFPNLRDLFLLRCSKLLGTLPKHLPSLQKLVIQRCE--KLLVDLPSLPSLNELKLGGCKKGGLQKGQPIIGRR 887 (1113)
Q Consensus 810 ~~~~~~~~~~~L~~L~L~~c~~L~~~lp~~l~~L~~L~L~~c~--~L~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~ 887 (1113)
+ .++.+++|+.|++++| .+. .+|...++|+.|++++|. .++ .+..+++|++|++++|......
T Consensus 189 --~-~~~~l~~L~~L~l~~N-~l~-~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l~--------- 253 (454)
T 1jl5_A 189 --P-ELQNLPFLTAIYADNN-SLK-KLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLP--------- 253 (454)
T ss_dssp --C-CCTTCTTCCEEECCSS-CCS-SCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCC---------
T ss_pred --c-cccCCCCCCEEECCCC-cCC-cCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCccc---------
Confidence 2 4578999999999999 677 578777899999999984 333 3667899999999999876532
Q ss_pred cccccCCCCCCcccccccCCCCCcCcccCCCCCCceEEEcccCCCcccccccCCCCCcccCCCCccEEEeecCCCCcccC
Q 046764 888 IHYGCADTSSSLRVCLQCCNSLTNNARVQLPLSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHILSCPSPTSIF 967 (1113)
Q Consensus 888 l~~~~~~~l~~L~~L~~~~N~L~~~~~l~~l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~c~~L~~ll 967 (1113)
..+++|+.|++..|.+..... .+++|+.|++++|. ++.+ +. ..++|++|++++|. ++. +
T Consensus 254 ------~~~~~L~~L~l~~N~l~~l~~--~~~~L~~L~ls~N~-l~~l-~~---------~~~~L~~L~l~~N~-l~~-i 312 (454)
T 1jl5_A 254 ------DLPPSLEALNVRDNYLTDLPE--LPQSLTFLDVSENI-FSGL-SE---------LPPNLYYLNASSNE-IRS-L 312 (454)
T ss_dssp ------SCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSC-CSEE-SC---------CCTTCCEEECCSSC-CSE-E
T ss_pred ------ccccccCEEECCCCcccccCc--ccCcCCEEECcCCc-cCcc-cC---------cCCcCCEEECcCCc-CCc-c
Confidence 124789999888888883222 25899999999986 5554 21 22689999998874 333 2
Q ss_pred CCCCcCCccCeEEEccccccccccccCCCCCCCeEEEEecCCCccccCCCCCCccEEEEeecCCCC--cccccCCCC---
Q 046764 968 SENELPATLQRLEVNSCSKLALLTLSGNLPQGPKYLELTSCSKWESIADNNTSLQVITVFRCKNLK--TLPDGLHKL--- 1042 (1113)
Q Consensus 968 ~~~~l~~sL~~L~i~~c~~L~~l~l~~~lp~~L~~L~L~~c~~L~~lp~~l~sL~~L~Ls~c~~l~--~lP~~l~~L--- 1042 (1113)
+ .++.+|+.|+++++. +..+. ..++. |+.|++++| .++.+|..+++|++|++++|...+ .+|.++..+
T Consensus 313 ~--~~~~~L~~L~Ls~N~-l~~lp--~~~~~-L~~L~L~~N-~l~~lp~~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n 385 (454)
T 1jl5_A 313 C--DLPPSLEELNVSNNK-LIELP--ALPPR-LERLIASFN-HLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMN 385 (454)
T ss_dssp C--CCCTTCCEEECCSSC-CSCCC--CCCTT-CCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECC
T ss_pred c--CCcCcCCEEECCCCc-ccccc--ccCCc-CCEEECCCC-ccccccchhhhccEEECCCCCCCcCCCChHHHHhhhhc
Confidence 2 355689999998863 44332 22344 999999996 677888878999999999987655 678888877
Q ss_pred ----------CCcCeeee-ccccccccCCCCCCCCcCcEEEeCCCCC
Q 046764 1043 ----------NNLQAFTI-CKNLVSFPKGGLPSTQLRDPDITGCQKL 1078 (1113)
Q Consensus 1043 ----------~sL~~L~L-cn~L~slp~~~~~~~sL~~L~l~~C~~L 1078 (1113)
++|+.|++ .|.+..+|. .|. +|+.|.+.+|.--
T Consensus 386 ~~~~~i~~~~~~L~~L~ls~N~l~~~~~--iP~-sl~~L~~~~~~~~ 429 (454)
T 1jl5_A 386 SHLAEVPELPQNLKQLHVETNPLREFPD--IPE-SVEDLRMNSERVV 429 (454)
T ss_dssp C----------------------------------------------
T ss_pred ccccccccccCcCCEEECCCCcCCcccc--chh-hHhheeCcCcccC
Confidence 89999999 888886643 454 8899988876533
No 30
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.86 E-value=4.4e-20 Score=229.26 Aligned_cols=451 Identities=17% Similarity=0.139 Sum_probs=265.6
Q ss_pred ccCCCCCeeEEccCCcC-------CCCCCccccEEecCCCCCcccCh-hhhccccccEEecccccccccccc-cccCCCc
Q 046764 587 PFFEFENLQTFLPTTVS-------HGGDLKHLRHLDLSETDIQILPE-SVNTLYNLRMLMLQKCNQLEKMCS-DMGNLLK 657 (1113)
Q Consensus 587 ~~~~l~~Lr~L~~~~~~-------~i~~L~~Lr~L~Ls~~~i~~LP~-~i~~L~~L~~LdL~~c~~l~~LP~-~i~~L~~ 657 (1113)
.|.++++||+|.+.++. .|+++++|++|+|++|+++.+|. .|++|++|++|+|++| .+..+|. .|++|++
T Consensus 71 ~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~ 149 (635)
T 4g8a_A 71 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKT 149 (635)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTS-CCCCSTTCCCTTCTT
T ss_pred HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCC-cCCCCChhhhhcCcc
Confidence 57789999999998865 68899999999999999999874 6899999999999995 6777775 4799999
Q ss_pred ceEEEcCCceecc-cccccccccc-ccccccceeeccccCccChh--hH-------------------HHhhcCCCcccc
Q 046764 658 LHHLDNFDFCCWK-DIDSALQELK-LLHLHGALEISKLENVRDAS--EA-------------------GEAQLNGKKNLK 714 (1113)
Q Consensus 658 L~~L~L~~~~i~~-~~~~~l~~L~-L~~L~g~L~i~~l~~~~~~~--~~-------------------~~~~l~~l~~L~ 714 (1113)
|++|++++|.+.. ..|..+..|. |++|. +.-+.+..+.... .. ..........++
T Consensus 150 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~--L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~ 227 (635)
T 4g8a_A 150 LKELNVAHNLIQSFKLPEYFSNLTNLEHLD--LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLH 227 (635)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEE--CCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEE
T ss_pred cCeeccccCccccCCCchhhccchhhhhhc--ccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhh
Confidence 9999999997654 3466667766 66554 2222222211000 00 000001111223
Q ss_pred eEEeeecCCCCCCCCchhhHhhhccCCCCCCcceEEEeccC--ccc--------cccCccccc-ccccCCCcccceEec-
Q 046764 715 TLLLQRTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYG--ETL--------RFENMQERE-DWIPYSSSQEVEFYG- 782 (1113)
Q Consensus 715 ~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~L~~~~--~~~--------~l~~L~~L~-~~Lpl~~l~~~~~~g- 782 (1113)
.|.+..+. ..... ....+..+..++...+.... ... .+..+..+. ..+.... ......+
T Consensus 228 ~l~l~~n~-----~~~~~---~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~ 298 (635)
T 4g8a_A 228 KLTLRNNF-----DSLNV---MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY-LDYYLDGI 298 (635)
T ss_dssp EEEEESCC-----SSHHH---HHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC-CCSCEEEC
T ss_pred hhhhhccc-----ccccc---cchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh-hcccccch
Confidence 33333221 00011 11223334455544443221 111 111111111 0000000 0000000
Q ss_pred CCCCCCCCCcceeeccccCcCcccccCCCCcccccCCCccEEEEecCcCcccccCCCCCCccEEEEecccCc-cccCCCC
Q 046764 783 NGCLIPFPSLETLRFENMQEREDWIPYSSSQEVEVFPNLRDLFLLRCSKLLGTLPKHLPSLQKLVIQRCEKL-LVDLPSL 861 (1113)
Q Consensus 783 ~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~lp~~l~~L~~L~L~~c~~L-~~~l~~l 861 (1113)
...+..+.+++.+.+.++.... . .......+|+.|++.+| .+.+..+..++.|+.+.+..+... ......+
T Consensus 299 ~~~~~~~~~l~~l~~~~~~~~~-~------~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l 370 (635)
T 4g8a_A 299 IDLFNCLTNVSSFSLVSVTIER-V------KDFSYNFGWQHLELVNC-KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL 370 (635)
T ss_dssp TTTTGGGTTCSEEEEESCEEEE-C------GGGGSCCCCSEEEEESC-EESSCCCCBCTTCCEEEEESCCSCCBCCCCBC
T ss_pred hhhhhhhccccccccccccccc-c------cccccchhhhhhhcccc-cccCcCcccchhhhhcccccccCCCCcccccc
Confidence 0223345566666666543211 1 12235667888888888 455344457788888888777422 1233457
Q ss_pred CcccEEEEeccCCCCcccCCCccccccccccCCCCCCcccccccCCCCC-cCcccCCCCCCceEEEcccCCCcccccccC
Q 046764 862 PSLNELKLGGCKKGGLQKGQPIIGRRIHYGCADTSSSLRVCLQCCNSLT-NNARVQLPLSLKDLSIAFCDNLRTLVEEEG 940 (1113)
Q Consensus 862 ~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~~l~~L~~L~~~~N~L~-~~~~l~~l~~L~~L~Ls~c~~L~~l~~~~~ 940 (1113)
++|+.|++++|....... .......+.+|+.++...|... ....+..+++|+.+++.++......
T Consensus 371 ~~L~~L~ls~n~l~~~~~---------~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~----- 436 (635)
T 4g8a_A 371 PSLEFLDLSRNGLSFKGC---------CSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS----- 436 (635)
T ss_dssp TTCCEEECCSSCCBEEEE---------CCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTT-----
T ss_pred cccccchhhccccccccc---------cccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccc-----
Confidence 888899888887643221 1123345667777766665655 5556777888999988877633222
Q ss_pred CCCCcccCCCCccEEEeecCCCCcccCCC-CCcCCccCeEEEcccccccccc--ccCCCCCCCeEEEEecCCCccccCCC
Q 046764 941 IPKGSRKYSSHLECLHILSCPSPTSIFSE-NELPATLQRLEVNSCSKLALLT--LSGNLPQGPKYLELTSCSKWESIADN 1017 (1113)
Q Consensus 941 lp~~l~~~l~~L~~L~L~~c~~L~~ll~~-~~l~~sL~~L~i~~c~~L~~l~--l~~~lp~~L~~L~L~~c~~L~~lp~~ 1017 (1113)
+......+++|+.++++.+..-.. .+. ....++++.|+++++.....+. .-..++. |+.|++++| .++.++..
T Consensus 437 -~~~~~~~l~~l~~l~ls~n~l~~~-~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~-L~~L~Ls~N-~L~~l~~~ 512 (635)
T 4g8a_A 437 -EFSVFLSLRNLIYLDISHTHTRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN-LTFLDLSQC-QLEQLSPT 512 (635)
T ss_dssp -SSCTTTTCTTCCEEECTTSCCEEC-CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT-CCEEECTTS-CCCEECTT
T ss_pred -cccccccccccccccccccccccc-cccccccchhhhhhhhhhcccccccCchhhhhccc-cCEEECCCC-ccCCcChH
Confidence 211223778888888877643222 222 1223478888888876555331 1234555 889999887 56666443
Q ss_pred ----CCCccEEEEeecCCCCcc-cccCCCCCCcCeeee-ccccccccCCCC-CC-CCcCcEEEeCCC
Q 046764 1018 ----NTSLQVITVFRCKNLKTL-PDGLHKLNNLQAFTI-CKNLVSFPKGGL-PS-TQLRDPDITGCQ 1076 (1113)
Q Consensus 1018 ----l~sL~~L~Ls~c~~l~~l-P~~l~~L~sL~~L~L-cn~L~slp~~~~-~~-~sL~~L~l~~C~ 1076 (1113)
+++|++|+|++|. +..+ |..+..+++|+.|+| .|++..++...+ .+ ++|+.|+++++|
T Consensus 513 ~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 513 AFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp TTTTCTTCCEEECTTSC-CCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred HHcCCCCCCEEECCCCc-CCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 7889999999864 5555 556888999999999 888888776544 33 478999987643
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.86 E-value=7.8e-21 Score=232.71 Aligned_cols=434 Identities=15% Similarity=0.081 Sum_probs=248.2
Q ss_pred CCCeeEEccCCcC--CCC--CCccccEEecCCCCCcccC-hhhhccccccEEecccccccccc-cccccCCCcceEEEcC
Q 046764 591 FENLQTFLPTTVS--HGG--DLKHLRHLDLSETDIQILP-ESVNTLYNLRMLMLQKCNQLEKM-CSDMGNLLKLHHLDNF 664 (1113)
Q Consensus 591 l~~Lr~L~~~~~~--~i~--~L~~Lr~L~Ls~~~i~~LP-~~i~~L~~L~~LdL~~c~~l~~L-P~~i~~L~~L~~L~L~ 664 (1113)
+...+++.+.+.. .+. -.++|++|+|++|.++.+| ..|+++++|++|+|++| .+..+ |..++++++|++|+++
T Consensus 30 ~~~~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp ---CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECT
T ss_pred cCCCcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECC
Confidence 3334666666543 111 1378999999999999885 68999999999999996 55555 6779999999999999
Q ss_pred Cceecccccccccccc-ccccccceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCCC
Q 046764 665 DFCCWKDIDSALQELK-LLHLHGALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKPH 743 (1113)
Q Consensus 665 ~~~i~~~~~~~l~~L~-L~~L~g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~ 743 (1113)
+|.+. ..|.. .+. |++|. +.-+.+..+. .+..++++++|+.|+++.|.... ..+..+..+
T Consensus 109 ~N~l~-~lp~~--~l~~L~~L~--Ls~N~l~~l~-----~p~~~~~l~~L~~L~L~~n~l~~---------~~~~~l~~L 169 (562)
T 3a79_B 109 HNRLQ-NISCC--PMASLRHLD--LSFNDFDVLP-----VCKEFGNLTKLTFLGLSAAKFRQ---------LDLLPVAHL 169 (562)
T ss_dssp TSCCC-EECSC--CCTTCSEEE--CCSSCCSBCC-----CCGGGGGCTTCCEEEEECSBCCT---------TTTGGGTTS
T ss_pred CCcCC-ccCcc--ccccCCEEE--CCCCCccccC-----chHhhcccCcccEEecCCCcccc---------Cchhhhhhc
Confidence 99875 34433 455 55554 3223332221 12357888999999998876322 123333333
Q ss_pred CCcceEEEeccCc--cccccCcccccccccCCCcccceEecCCCCCCCCCc--ce--eeccccCcCcccccCCCCccccc
Q 046764 744 QNLERFCISGYGE--TLRFENMQEREDWIPYSSSQEVEFYGNGCLIPFPSL--ET--LRFENMQEREDWIPYSSSQEVEV 817 (1113)
Q Consensus 744 ~~L~~L~L~~~~~--~~~l~~L~~L~~~Lpl~~l~~~~~~g~~~l~~~~~L--~~--L~L~~~~~l~~~~~~~~~~~~~~ 817 (1113)
+|+.|+++++.. ... . ...++.| +. +++.+..... +. .......
T Consensus 170 -~L~~L~L~~n~l~~~~~----------~---------------~~~l~~l~~~~l~l~l~~n~~~~-~~---~~~~~~~ 219 (562)
T 3a79_B 170 -HLSCILLDLVSYHIKGG----------E---------------TESLQIPNTTVLHLVFHPNSLFS-VQ---VNMSVNA 219 (562)
T ss_dssp -CEEEEEEEESSCCCCSS----------S---------------CCEEEECCEEEEEEEECSSSCCC-CC---CEEEESS
T ss_pred -eeeEEEeeccccccccc----------C---------------cccccccCcceEEEEecCccchh-hh---hhhcccc
Confidence 559999988643 110 0 0011111 11 2222211111 11 0112334
Q ss_pred CCCccEEEEecCc----CcccccC--CCCCCccEEEEecccCccc------cCCCCCcccEEEEeccCCCCcccCCCccc
Q 046764 818 FPNLRDLFLLRCS----KLLGTLP--KHLPSLQKLVIQRCEKLLV------DLPSLPSLNELKLGGCKKGGLQKGQPIIG 885 (1113)
Q Consensus 818 ~~~L~~L~L~~c~----~L~~~lp--~~l~~L~~L~L~~c~~L~~------~l~~l~~L~~L~L~~~~~~~~~~~~~l~~ 885 (1113)
+++|+.|+++++. .+.+.++ ..+++|+.|++.++..-.. .....++|++|++++|...+..|.
T Consensus 220 l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~----- 294 (562)
T 3a79_B 220 LGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDR----- 294 (562)
T ss_dssp EEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCC-----
T ss_pred cceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccc-----
Confidence 5666666666642 1111111 1445666666655421100 001134666777766665432221
Q ss_pred cccccccC----CCCCCcccccccCCCCCcC-cccC---CCCCCceEEEcccCCCcccccccCCCCCcccCCCCccEEEe
Q 046764 886 RRIHYGCA----DTSSSLRVCLQCCNSLTNN-ARVQ---LPLSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHI 957 (1113)
Q Consensus 886 l~l~~~~~----~~l~~L~~L~~~~N~L~~~-~~l~---~l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L 957 (1113)
..+ ..++.|+.+....|.+..+ ..+. .-.+|+.|++++|. +... + ++ ..+++|++|++
T Consensus 295 -----~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~-~~~~-~---~~----~~l~~L~~L~l 360 (562)
T 3a79_B 295 -----EEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP-FIHM-V---CP----PSPSSFTFLNF 360 (562)
T ss_dssp -----CCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSC-CCCC-C---CC----SSCCCCCEEEC
T ss_pred -----hhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCC-cccc-c---Cc----cCCCCceEEEC
Confidence 111 2333333333333233211 1110 11457777777665 2222 1 00 25667777777
Q ss_pred ecCCCCcccCCC--CCcCCccCeEEEcccccccccc----ccCCCCCCCeEEEEecCCCccccCCC----CCCccEEEEe
Q 046764 958 LSCPSPTSIFSE--NELPATLQRLEVNSCSKLALLT----LSGNLPQGPKYLELTSCSKWESIADN----NTSLQVITVF 1027 (1113)
Q Consensus 958 ~~c~~L~~ll~~--~~l~~sL~~L~i~~c~~L~~l~----l~~~lp~~L~~L~L~~c~~L~~lp~~----l~sL~~L~Ls 1027 (1113)
++|..-.. .+. ..++ +|+.|+++++ .++.+. ...+++. |+.|++++|.-...+|.. +++|++|+++
T Consensus 361 ~~n~l~~~-~~~~~~~l~-~L~~L~L~~N-~l~~~~~~~~~~~~l~~-L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~ 436 (562)
T 3a79_B 361 TQNVFTDS-VFQGCSTLK-RLQTLILQRN-GLKNFFKVALMTKNMSS-LETLDVSLNSLNSHAYDRTCAWAESILVLNLS 436 (562)
T ss_dssp CSSCCCTT-TTTTCCSCS-SCCEEECCSS-CCCBTTHHHHTTTTCTT-CCEEECTTSCCBSCCSSCCCCCCTTCCEEECC
T ss_pred CCCccccc-hhhhhcccC-CCCEEECCCC-CcCCcccchhhhcCCCC-CCEEECCCCcCCCccChhhhcCcccCCEEECC
Confidence 76643332 221 1233 6777777665 233221 1235566 999999987433337654 7999999999
Q ss_pred ecCCCCcccccCCCCCCcCeeee-ccccccccCCCCCCCCcCcEEEeCCCCCccCCCCCCC--CCcCccccccccC
Q 046764 1028 RCKNLKTLPDGLHKLNNLQAFTI-CKNLVSFPKGGLPSTQLRDPDITGCQKLEALPDGDLS--STFKTGKSSKCGI 1100 (1113)
Q Consensus 1028 ~c~~l~~lP~~l~~L~sL~~L~L-cn~L~slp~~~~~~~sL~~L~l~~C~~L~~l~~~~l~--~sL~~L~~~~c~~ 1100 (1113)
+|...+.+|..+. ++|+.|++ .|++..+|.+...+++|+.|++++ ++++.+|...+. ..|+.+++++++.
T Consensus 437 ~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 437 SNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVAS-NQLKSVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp SSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCS-SCCCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred CCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCC-CCCCCCCHHHHhcCCCCCEEEecCCCc
Confidence 9876666676654 79999999 899999999888888999999988 578888875332 3588888887643
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.85 E-value=4.5e-20 Score=220.44 Aligned_cols=274 Identities=21% Similarity=0.221 Sum_probs=163.7
Q ss_pred cccccccCCCCCeeEEccCCcC-----CCCCCccccEEecCCCCCcccChhhhccccccEEecccccccccccccccCCC
Q 046764 582 IKMFEPFFEFENLQTFLPTTVS-----HGGDLKHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLL 656 (1113)
Q Consensus 582 ~~~~~~~~~l~~Lr~L~~~~~~-----~i~~L~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~ 656 (1113)
...++.+..+++||+|.+.++. .++++++|++|++++|.+..+|. ++++++|++|++++| .+..+|. +++++
T Consensus 58 i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~l~ 134 (466)
T 1o6v_A 58 IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN-QITDIDP-LKNLT 134 (466)
T ss_dssp CCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCT
T ss_pred CccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh-hcCCCCCCEEECCCC-CCCCChH-HcCCC
Confidence 3445667789999999998875 58899999999999999999977 999999999999995 6777776 99999
Q ss_pred cceEEEcCCceecccccccccccc-ccccccceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHh
Q 046764 657 KLHHLDNFDFCCWKDIDSALQELK-LLHLHGALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETH 735 (1113)
Q Consensus 657 ~L~~L~L~~~~i~~~~~~~l~~L~-L~~L~g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 735 (1113)
+|++|++++|.+... + .+..+. |+.|. +.+ ..... ..+..+++|+.|+++.|....
T Consensus 135 ~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~----l~~--~~~~~-----~~~~~l~~L~~L~l~~n~l~~---------- 191 (466)
T 1o6v_A 135 NLNRLELSSNTISDI-S-ALSGLTSLQQLS----FGN--QVTDL-----KPLANLTTLERLDISSNKVSD---------- 191 (466)
T ss_dssp TCSEEEEEEEEECCC-G-GGTTCTTCSEEE----EEE--SCCCC-----GGGTTCTTCCEEECCSSCCCC----------
T ss_pred CCCEEECCCCccCCC-h-hhccCCcccEee----cCC--cccCc-----hhhccCCCCCEEECcCCcCCC----------
Confidence 999999999866432 1 233443 33332 110 11100 125555666666665554111
Q ss_pred hhccCCCCCCcceEEEeccCccccccCcccccccccCCCcccceEecCCCCCCCCCcceeeccccCcCcccccCCCCccc
Q 046764 736 VLDMLKPHQNLERFCISGYGETLRFENMQEREDWIPYSSSQEVEFYGNGCLIPFPSLETLRFENMQEREDWIPYSSSQEV 815 (1113)
Q Consensus 736 ~l~~L~~~~~L~~L~L~~~~~~~~l~~L~~L~~~Lpl~~l~~~~~~g~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~ 815 (1113)
+..+..+++|+.|+++++... ... ..
T Consensus 192 -~~~l~~l~~L~~L~l~~n~l~-----------------------------------------------~~~------~~ 217 (466)
T 1o6v_A 192 -ISVLAKLTNLESLIATNNQIS-----------------------------------------------DIT------PL 217 (466)
T ss_dssp -CGGGGGCTTCSEEECCSSCCC-----------------------------------------------CCG------GG
T ss_pred -ChhhccCCCCCEEEecCCccc-----------------------------------------------ccc------cc
Confidence 112334445555555443211 110 12
Q ss_pred ccCCCccEEEEecCcCcccccC--CCCCCccEEEEeccc--CccccCCCCCcccEEEEeccCCCCcccCCCccccccccc
Q 046764 816 EVFPNLRDLFLLRCSKLLGTLP--KHLPSLQKLVIQRCE--KLLVDLPSLPSLNELKLGGCKKGGLQKGQPIIGRRIHYG 891 (1113)
Q Consensus 816 ~~~~~L~~L~L~~c~~L~~~lp--~~l~~L~~L~L~~c~--~L~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~ 891 (1113)
+.+++|+.|++++| .+. .++ ..+++|+.|++++|. .+. .+..+++|++|++++|......
T Consensus 218 ~~l~~L~~L~l~~n-~l~-~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~------------- 281 (466)
T 1o6v_A 218 GILTNLDELSLNGN-QLK-DIGTLASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQISNIS------------- 281 (466)
T ss_dssp GGCTTCCEEECCSS-CCC-CCGGGGGCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCG-------------
T ss_pred cccCCCCEEECCCC-Ccc-cchhhhcCCCCCEEECCCCccccch-hhhcCCCCCEEECCCCccCccc-------------
Confidence 23444555555444 232 111 134455555555442 111 2445666666666666554421
Q ss_pred cCCCCCCcccccccCCCCCcCcccCCCCCCceEEEcccCCCcccccccCCCCCcccCCCCccEEEeecC
Q 046764 892 CADTSSSLRVCLQCCNSLTNNARVQLPLSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHILSC 960 (1113)
Q Consensus 892 ~~~~l~~L~~L~~~~N~L~~~~~l~~l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~c 960 (1113)
.+..+++|+.|++.+|.+.....+..+++|+.|++++|. +..+ +. + ..+++|+.|++++|
T Consensus 282 ~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~-l~~~-~~------~-~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 282 PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN-ISDI-SP------V-SSLTKLQRLFFYNN 341 (466)
T ss_dssp GGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSC-CSCC-GG------G-GGCTTCCEEECCSS
T ss_pred cccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCc-CCCc-hh------h-ccCccCCEeECCCC
Confidence 145566666666666666633346677788888888775 4444 11 1 26777888887776
No 33
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.83 E-value=6.1e-20 Score=218.59 Aligned_cols=356 Identities=16% Similarity=0.112 Sum_probs=169.4
Q ss_pred ccccEEecCCCCCccc-ChhhhccccccEEecccccccccc-cccccCCCcceEEEcCCceecccccccccccc-ccccc
Q 046764 609 KHLRHLDLSETDIQIL-PESVNTLYNLRMLMLQKCNQLEKM-CSDMGNLLKLHHLDNFDFCCWKDIDSALQELK-LLHLH 685 (1113)
Q Consensus 609 ~~Lr~L~Ls~~~i~~L-P~~i~~L~~L~~LdL~~c~~l~~L-P~~i~~L~~L~~L~L~~~~i~~~~~~~l~~L~-L~~L~ 685 (1113)
++|++|+|++|.++.+ |..++++++|++|++++|.....+ |..+.++++|++|++++|.+....|..+..+. |++|.
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 5677777777777765 566777777777777775443344 34567777777777777655444444444444 43333
Q ss_pred cceeeccccCccChhhHHHh--hcCCCcccceEEeeecCCCCCCCCchhhHhhhcc-CCCCCCcceEEEeccCccccccC
Q 046764 686 GALEISKLENVRDASEAGEA--QLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDM-LKPHQNLERFCISGYGETLRFEN 762 (1113)
Q Consensus 686 g~L~i~~l~~~~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~-L~~~~~L~~L~L~~~~~~~~l~~ 762 (1113)
+.-+.+ ...... .+..+++|+.|+++.|...+.. ... +..+++|+.|+++++......
T Consensus 110 --L~~n~l------~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~---------~~~~~~~l~~L~~L~L~~n~l~~~~-- 170 (455)
T 3v47_A 110 --LTQCNL------DGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ---------PASFFLNMRRFHVLDLTFNKVKSIC-- 170 (455)
T ss_dssp --CTTSCC------BTHHHHSSTTTTCTTCCEEECCSSBCCSCC---------CCGGGGGCTTCCEEECTTCCBSCCC--
T ss_pred --CCCCCC------CccccCcccccCcccCCEEECCCCccCccC---------cccccCCCCcccEEeCCCCcccccC--
Confidence 111111 111111 2556666677776665422110 111 344556666666554321100
Q ss_pred cccccccccCCCcccceEecCCCCCCC--CCcceeeccccCcCcccccCCC----CcccccCCCccEEEEecCcCccccc
Q 046764 763 MQEREDWIPYSSSQEVEFYGNGCLIPF--PSLETLRFENMQEREDWIPYSS----SQEVEVFPNLRDLFLLRCSKLLGTL 836 (1113)
Q Consensus 763 L~~L~~~Lpl~~l~~~~~~g~~~l~~~--~~L~~L~L~~~~~l~~~~~~~~----~~~~~~~~~L~~L~L~~c~~L~~~l 836 (1113)
| ..+..+ ++|+.|+++++.-.. ...... ......+++|++|++++| .+.+..
T Consensus 171 --------~------------~~l~~l~~~~L~~L~l~~n~l~~-~~~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~ 228 (455)
T 3v47_A 171 --------E------------EDLLNFQGKHFTLLRLSSITLQD-MNEYWLGWEKCGNPFKNTSITTLDLSGN-GFKESM 228 (455)
T ss_dssp --------T------------TTSGGGTTCEEEEEECTTCBCTT-CSTTCTTHHHHCCTTTTCEEEEEECTTS-CCCHHH
T ss_pred --------h------------hhhhccccccccccccccCcccc-cchhhccccccccccccceeeeEecCCC-cccccc
Confidence 0 011111 345555555432111 000000 001123355555555555 333222
Q ss_pred CCCCCCccEEEEecccCccccCCCCCcccEEEEeccCCCCcccC-CCccccccccccCC--CCCCcccccccCCCCC--c
Q 046764 837 PKHLPSLQKLVIQRCEKLLVDLPSLPSLNELKLGGCKKGGLQKG-QPIIGRRIHYGCAD--TSSSLRVCLQCCNSLT--N 911 (1113)
Q Consensus 837 p~~l~~L~~L~L~~c~~L~~~l~~l~~L~~L~L~~~~~~~~~~~-~~l~~l~l~~~~~~--~l~~L~~L~~~~N~L~--~ 911 (1113)
|..+ ......++|+.|++++|........ ..+... ....+. ..++|+.|++..|.+. .
T Consensus 229 ~~~~---------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~L~~L~l~~n~l~~~~ 291 (455)
T 3v47_A 229 AKRF---------------FDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP--DNFTFKGLEASGVKTCDLSKSKIFALL 291 (455)
T ss_dssp HHHH---------------HHHTTTCCEEEEECTTCTTTSCCTTCCSSCCC--CTTTTGGGTTSCCCEEECCSSCCCEEC
T ss_pred hhhh---------------hccccccceeeEeeccccccccccchhhhccC--cccccccccccCceEEEecCccccccc
Confidence 2210 0000123444444444432221100 000000 000111 1245666666666665 4
Q ss_pred CcccCCCCCCceEEEcccCCCcccccccCCCCCcccCCCCccEEEeecCCCCcccCCCCCcCCccCeEEEcccccccccc
Q 046764 912 NARVQLPLSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHILSCPSPTSIFSENELPATLQRLEVNSCSKLALLT 991 (1113)
Q Consensus 912 ~~~l~~l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~c~~L~~ll~~~~l~~sL~~L~i~~c~~L~~l~ 991 (1113)
+..+..+++|+.|++++|. +..+ .|..+. .+++|++|++++|.- +. ++...+
T Consensus 292 ~~~~~~l~~L~~L~Ls~n~-l~~~-----~~~~~~-~l~~L~~L~Ls~N~l-~~-~~~~~~------------------- 343 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQNE-INKI-----DDNAFW-GLTHLLKLNLSQNFL-GS-IDSRMF------------------- 343 (455)
T ss_dssp TTTTTTCTTCCEEECTTSC-CCEE-----CTTTTT-TCTTCCEEECCSSCC-CE-ECGGGG-------------------
T ss_pred hhhcccCCCCCEEECCCCc-cccc-----ChhHhc-CcccCCEEECCCCcc-CC-cChhHh-------------------
Confidence 5566777788888887775 4443 222233 677888888777632 22 110000
Q ss_pred ccCCCCCCCeEEEEecCCCcccc-CCC---CCCccEEEEeecCCCCcccc-cCCCCCCcCeeee-ccccc
Q 046764 992 LSGNLPQGPKYLELTSCSKWESI-ADN---NTSLQVITVFRCKNLKTLPD-GLHKLNNLQAFTI-CKNLV 1055 (1113)
Q Consensus 992 l~~~lp~~L~~L~L~~c~~L~~l-p~~---l~sL~~L~Ls~c~~l~~lP~-~l~~L~sL~~L~L-cn~L~ 1055 (1113)
.+++. |+.|++++| .++.+ |.. +++|++|++++| .++.+|. .+..+++|+.|++ .|.+.
T Consensus 344 --~~l~~-L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 344 --ENLDK-LEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp --TTCTT-CCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred --cCccc-CCEEECCCC-cccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCcc
Confidence 02222 555555554 33333 322 688888888886 4566654 4578888888888 55554
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.83 E-value=1.1e-19 Score=208.29 Aligned_cols=298 Identities=17% Similarity=0.159 Sum_probs=162.5
Q ss_pred CCCCccccEEecCCCCCcccChhhhccccccEEecccccccccccccccCCCcceEEEcCCceecccccccccccccccc
Q 046764 605 GGDLKHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNFDFCCWKDIDSALQELKLLHL 684 (1113)
Q Consensus 605 i~~L~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~~~~i~~~~~~~l~~L~L~~L 684 (1113)
+..+++|++|+++++.+..+|. ++.+++|++|++++| .+..+|. +.++++|++|++++|.+..
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n~i~~-------------- 102 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTNKITD-------------- 102 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCC--------------
T ss_pred chhcccccEEEEeCCccccchh-hhhcCCccEEEccCC-ccccchh-hhcCCcCCEEEccCCcccC--------------
Confidence 3456778888888888888865 888888888888885 6677776 8888888888888764311
Q ss_pred ccceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCCCCCcceEEEeccCccccccCcc
Q 046764 685 HGALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGETLRFENMQ 764 (1113)
Q Consensus 685 ~g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~L~~~~~~~~l~~L~ 764 (1113)
+ ..+..+++|+.|++++|.... +..+..+
T Consensus 103 -----------~--------~~~~~l~~L~~L~l~~n~i~~-----------~~~~~~l--------------------- 131 (347)
T 4fmz_A 103 -----------I--------SALQNLTNLRELYLNEDNISD-----------ISPLANL--------------------- 131 (347)
T ss_dssp -----------C--------GGGTTCTTCSEEECTTSCCCC-----------CGGGTTC---------------------
T ss_pred -----------c--------hHHcCCCcCCEEECcCCcccC-----------chhhccC---------------------
Confidence 0 024556677777776554111 0112233
Q ss_pred cccccccCCCcccceEecCCCCCCCCCcceeeccccCcCcccccCCCCcccccCCCccEEEEecCcCcccccC--CCCCC
Q 046764 765 EREDWIPYSSSQEVEFYGNGCLIPFPSLETLRFENMQEREDWIPYSSSQEVEVFPNLRDLFLLRCSKLLGTLP--KHLPS 842 (1113)
Q Consensus 765 ~L~~~Lpl~~l~~~~~~g~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~lp--~~l~~ 842 (1113)
++|+.|+++++....... ....+++|++|++++| .+. .++ ..+++
T Consensus 132 -------------------------~~L~~L~l~~n~~~~~~~------~~~~l~~L~~L~l~~~-~~~-~~~~~~~l~~ 178 (347)
T 4fmz_A 132 -------------------------TKMYSLNLGANHNLSDLS------PLSNMTGLNYLTVTES-KVK-DVTPIANLTD 178 (347)
T ss_dssp -------------------------TTCCEEECTTCTTCCCCG------GGTTCTTCCEEECCSS-CCC-CCGGGGGCTT
T ss_pred -------------------------CceeEEECCCCCCccccc------chhhCCCCcEEEecCC-CcC-CchhhccCCC
Confidence 344444444433222211 2334555555555555 232 111 12233
Q ss_pred ccEEEEeccc--CccccCCCCCcccEEEEeccCCCCcccCCCccccccccccCCCCCCcccccccCCCCCcCcccCCCCC
Q 046764 843 LQKLVIQRCE--KLLVDLPSLPSLNELKLGGCKKGGLQKGQPIIGRRIHYGCADTSSSLRVCLQCCNSLTNNARVQLPLS 920 (1113)
Q Consensus 843 L~~L~L~~c~--~L~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~~l~~L~~L~~~~N~L~~~~~l~~l~~ 920 (1113)
|++|++++|. .+. .+..+++|+.|++++|.... ...+..+++
T Consensus 179 L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~-----------------------------------~~~~~~~~~ 222 (347)
T 4fmz_A 179 LYSLSLNYNQIEDIS-PLASLTSLHYFTAYVNQITD-----------------------------------ITPVANMTR 222 (347)
T ss_dssp CSEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCC-----------------------------------CGGGGGCTT
T ss_pred CCEEEccCCcccccc-cccCCCccceeecccCCCCC-----------------------------------CchhhcCCc
Confidence 3333333331 111 13334555555555554332 222455666
Q ss_pred CceEEEcccCCCcccccccCCCCCcccCCCCccEEEeecCCCCcccCCCCCcCCccCeEEEccccccccccccCCCCCCC
Q 046764 921 LKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHILSCPSPTSIFSENELPATLQRLEVNSCSKLALLTLSGNLPQGP 1000 (1113)
Q Consensus 921 L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~c~~L~~ll~~~~l~~sL~~L~i~~c~~L~~l~l~~~lp~~L 1000 (1113)
|+.|++++|. +..+ +. + ..+++|++|++++|. ++. ++.. ..++. |
T Consensus 223 L~~L~l~~n~-l~~~-~~------~-~~l~~L~~L~l~~n~-l~~-~~~~-----------------------~~l~~-L 267 (347)
T 4fmz_A 223 LNSLKIGNNK-ITDL-SP------L-ANLSQLTWLEIGTNQ-ISD-INAV-----------------------KDLTK-L 267 (347)
T ss_dssp CCEEECCSSC-CCCC-GG------G-TTCTTCCEEECCSSC-CCC-CGGG-----------------------TTCTT-C
T ss_pred CCEEEccCCc-cCCC-cc------h-hcCCCCCEEECCCCc-cCC-ChhH-----------------------hcCCC-c
Confidence 6677766664 4333 21 1 256666666666652 222 1100 02222 4
Q ss_pred eEEEEecCCCccccCCC--CCCccEEEEeecCCCCcccccCCCCCCcCeeee-ccccccccCCCCCCCCcCcEEEeCCC
Q 046764 1001 KYLELTSCSKWESIADN--NTSLQVITVFRCKNLKTLPDGLHKLNNLQAFTI-CKNLVSFPKGGLPSTQLRDPDITGCQ 1076 (1113)
Q Consensus 1001 ~~L~L~~c~~L~~lp~~--l~sL~~L~Ls~c~~l~~lP~~l~~L~sL~~L~L-cn~L~slp~~~~~~~sL~~L~l~~C~ 1076 (1113)
+.|++++| .++.++.. +++|+.|++++|......|..+..+++|+.|++ .|.+..++. ...+++|+.|++++|+
T Consensus 268 ~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 268 KMLNVGSN-QISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp CEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC-
T ss_pred CEEEccCC-ccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhc
Confidence 44444443 33333322 577888888877654455667777888888888 666776654 3345578888887754
No 35
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.82 E-value=7.2e-20 Score=225.51 Aligned_cols=181 Identities=22% Similarity=0.370 Sum_probs=143.6
Q ss_pred CCHHHHHHHHHHHhcC--cEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEecCChhhHhhhCCCceEec---CCCC
Q 046764 363 DELGLLQEKLKNQMSG--KKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTTRNRDVAAIMGSVRDYPL---KEST 437 (1113)
Q Consensus 363 ~~~~~l~~~l~~~L~~--kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTTR~~~va~~~~~~~~~~l---~~L~ 437 (1113)
.+.+.+...+++.+.+ +++||||||+|+. ..++.+ .+|++||||||++.++..+. ...+++ ++|+
T Consensus 218 ~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~~l~~l-------~~~~~ilvTsR~~~~~~~~~-~~~~~v~~l~~L~ 287 (591)
T 1z6t_A 218 LNIEEAKDRLRILMLRKHPRSLLILDDVWDS--WVLKAF-------DSQCQILLTTRDKSVTDSVM-GPKYVVPVESSLG 287 (591)
T ss_dssp CSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--HHHHTT-------CSSCEEEEEESCGGGGTTCC-SCEEEEECCSSCC
T ss_pred CCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--HHHHHh-------cCCCeEEEECCCcHHHHhcC-CCceEeecCCCCC
Confidence 3456667777777776 7899999999986 555432 46899999999999987654 344555 5899
Q ss_pred HHHHHHHHHhcccCCCCCCCchhHHHHHHHHHHHhCCChHHHHHHHhhhcCCCC--------------------------
Q 046764 438 KDDCLQVFTQHCLGMRDFSMQQSLKDISKKIVIRCNGLPLAAKTLAGLLRGKND-------------------------- 491 (1113)
Q Consensus 438 ~~~s~~LF~~~af~~~~~~~~~~l~~i~~~I~~~c~GlPLAi~~ig~~L~~~~~-------------------------- 491 (1113)
.+||++||...++... ....+.+.+|+++|+|+||||..+|+.|+.+..
T Consensus 288 ~~ea~~L~~~~~~~~~-----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~ 362 (591)
T 1z6t_A 288 KEKGLEILSLFVNMKK-----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYE 362 (591)
T ss_dssp HHHHHHHHHHHHTSCG-----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTTCHHHHHHHHHSCCCCCSSCCCSSCCH
T ss_pred HHHHHHHHHHHhCCCc-----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCchhHHHHHHHHHHhHHHHhhhccccchH
Confidence 9999999999985421 223457899999999999999999999875542
Q ss_pred ------------------cccccccccccccCcCCcccchhhHHHHHHHHcCCCccCCchhhHHHHHHHHHHHHHhCCCc
Q 046764 492 ------------------PRFSACSIARYGIYQKNYEFHEEEEVTLLWMAEGFPYHIDTKEEIQDLGHKFFHELYSRSSF 553 (1113)
Q Consensus 492 ------------------~cfly~~~~~~~~fp~~~~i~~~~~Li~~Wiaegfi~~~~~~~~~e~~~~~~~~~Lv~rsli 553 (1113)
.||.++| +||+++.|+. +.++.+|.++ .+.++.++++|+++|||
T Consensus 363 ~l~~~l~~s~~~L~~~~~~~l~~la-----~f~~~~~i~~-~~l~~l~~~~------------~~~~~~~l~~L~~~~Ll 424 (591)
T 1z6t_A 363 ALDEAMSISVEMLREDIKDYYTDLS-----ILQKDVKVPT-KVLCILWDME------------TEEVEDILQEFVNKSLL 424 (591)
T ss_dssp HHHHHHHHHHHTSCTTTHHHHHHGG-----GCCTTCCEEH-HHHHHHHTCC------------HHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHcc-----ccCCCCccCH-HHHHHHhccC------------HHHHHHHHHHHHhCcCe
Confidence 0999999 9999999999 8999999643 23467899999999999
Q ss_pred cccC-CCCCceeechHHHHHHHHh
Q 046764 554 QQSS-SDPCRFLMHDLINDLAQWA 576 (1113)
Q Consensus 554 ~~~~-~~~~~~~mHdlv~d~~~~i 576 (1113)
+... +....|+||++++++++..
T Consensus 425 ~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 425 FCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp EEEEETTEEEEECCHHHHHHHHHH
T ss_pred EEecCCCccEEEEcHHHHHHHHhh
Confidence 8654 3345799999999999876
No 36
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.81 E-value=2.7e-19 Score=213.07 Aligned_cols=362 Identities=14% Similarity=0.048 Sum_probs=200.7
Q ss_pred ccEEecCCCCCcccChhhhccccccEEecccccccccc-cccccCCCcceEEEcCCceecccccccccccccccccccee
Q 046764 611 LRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKM-CSDMGNLLKLHHLDNFDFCCWKDIDSALQELKLLHLHGALE 689 (1113)
Q Consensus 611 Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~L-P~~i~~L~~L~~L~L~~~~i~~~~~~~l~~L~L~~L~g~L~ 689 (1113)
-+.++.++++++.+|. + .++|++|+|++| .+..+ |..++++++|++|++++|.+....+
T Consensus 12 ~~~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~---------------- 71 (455)
T 3v47_A 12 GYNAICINRGLHQVPE-L--PAHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIR---------------- 71 (455)
T ss_dssp TTEEECCSSCCSSCCC-C--CTTCCEEECCSS-CCCEECTTTTSSCTTCCEEECCCCSTTCEEC----------------
T ss_pred ccccCcCCCCcccCCC-C--CCccCEEEecCC-ccCcCChhHhccCccccEEECcCCcccceEC----------------
Confidence 3567888889999998 3 379999999996 45555 7889999999999999885422111
Q ss_pred eccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCCCCCcceEEEeccCccccccCccccccc
Q 046764 690 ISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGETLRFENMQEREDW 769 (1113)
Q Consensus 690 i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~L~~~~~~~~l~~L~~L~~~ 769 (1113)
...+.++++|+.|++++|.... ..+..+..+++|+.|+++++.... .
T Consensus 72 --------------~~~~~~l~~L~~L~Ls~n~l~~---------~~~~~~~~l~~L~~L~L~~n~l~~----------~ 118 (455)
T 3v47_A 72 --------------NNTFRGLSSLIILKLDYNQFLQ---------LETGAFNGLANLEVLTLTQCNLDG----------A 118 (455)
T ss_dssp --------------TTTTTTCTTCCEEECTTCTTCE---------ECTTTTTTCTTCCEEECTTSCCBT----------H
T ss_pred --------------cccccccccCCEEeCCCCccCc---------cChhhccCcccCCEEeCCCCCCCc----------c
Confidence 0124556667777776554211 123345556666666666643211 0
Q ss_pred ccCCCcccceEecCCCCCCCCCcceeeccccCcCcccccCCCCcc-cccCCCccEEEEecCcCcccccCCCC-----CCc
Q 046764 770 IPYSSSQEVEFYGNGCLIPFPSLETLRFENMQEREDWIPYSSSQE-VEVFPNLRDLFLLRCSKLLGTLPKHL-----PSL 843 (1113)
Q Consensus 770 Lpl~~l~~~~~~g~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~-~~~~~~L~~L~L~~c~~L~~~lp~~l-----~~L 843 (1113)
.| ....+..+++|+.|+++++.-. ... +.. +..+++|++|++++| .+.+..|..+ ++|
T Consensus 119 ~~----------~~~~~~~l~~L~~L~L~~n~l~-~~~----~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~~~L 182 (455)
T 3v47_A 119 VL----------SGNFFKPLTSLEMLVLRDNNIK-KIQ----PASFFLNMRRFHVLDLTFN-KVKSICEEDLLNFQGKHF 182 (455)
T ss_dssp HH----------HSSTTTTCTTCCEEECCSSBCC-SCC----CCGGGGGCTTCCEEECTTC-CBSCCCTTTSGGGTTCEE
T ss_pred cc----------CcccccCcccCCEEECCCCccC-ccC----cccccCCCCcccEEeCCCC-cccccChhhhhccccccc
Confidence 00 0012445667777777765321 111 111 456777777777777 4553444322 455
Q ss_pred cEEEEecccCccc-----------cCCCCCcccEEEEeccCCCCcccCCCccccccccccCCCCCCcccccccCCCCC-c
Q 046764 844 QKLVIQRCEKLLV-----------DLPSLPSLNELKLGGCKKGGLQKGQPIIGRRIHYGCADTSSSLRVCLQCCNSLT-N 911 (1113)
Q Consensus 844 ~~L~L~~c~~L~~-----------~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~~l~~L~~L~~~~N~L~-~ 911 (1113)
+.|++++|..... .+..+++|++|++++|......+. ........++|+.|.+..|.+. .
T Consensus 183 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~--------~~~~~~~~~~L~~L~l~~~~~~~~ 254 (455)
T 3v47_A 183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK--------RFFDAIAGTKIQSLILSNSYNMGS 254 (455)
T ss_dssp EEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHH--------HHHHHTTTCCEEEEECTTCTTTSC
T ss_pred cccccccCcccccchhhccccccccccccceeeeEecCCCcccccchh--------hhhccccccceeeEeecccccccc
Confidence 6666655532110 112346677777777765442210 0000011234444433332211 0
Q ss_pred C-----------cccC--CCCCCceEEEcccCCCcccccccCCCCCcccCCCCccEEEeecCCCCcccCCCCCcCCccCe
Q 046764 912 N-----------ARVQ--LPLSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHILSCPSPTSIFSENELPATLQR 978 (1113)
Q Consensus 912 ~-----------~~l~--~l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~c~~L~~ll~~~~l~~sL~~ 978 (1113)
. ..+. ..++|+.|++++|. +..+ .|..+. .+++|++|+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~-----~~~~~~-~l~~L~~L~---------------------- 305 (455)
T 3v47_A 255 SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK-IFAL-----LKSVFS-HFTDLEQLT---------------------- 305 (455)
T ss_dssp CTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC-CCEE-----CTTTTT-TCTTCCEEE----------------------
T ss_pred ccchhhhccCcccccccccccCceEEEecCcc-cccc-----chhhcc-cCCCCCEEE----------------------
Confidence 0 0000 12344444444443 2222 111121 444444444
Q ss_pred EEEcccccccccc-ccCCCCCCCeEEEEecCCCccccCC-C---CCCccEEEEeecCCCCcccccCCCCCCcCeeee-cc
Q 046764 979 LEVNSCSKLALLT-LSGNLPQGPKYLELTSCSKWESIAD-N---NTSLQVITVFRCKNLKTLPDGLHKLNNLQAFTI-CK 1052 (1113)
Q Consensus 979 L~i~~c~~L~~l~-l~~~lp~~L~~L~L~~c~~L~~lp~-~---l~sL~~L~Ls~c~~l~~lP~~l~~L~sL~~L~L-cn 1052 (1113)
++++.--.... .-.+++. |+.|++++| .++.++. . +++|++|++++|......|..+..+++|++|++ .|
T Consensus 306 --Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 381 (455)
T 3v47_A 306 --LAQNEINKIDDNAFWGLTH-LLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381 (455)
T ss_dssp --CTTSCCCEECTTTTTTCTT-CCEEECCSS-CCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred --CCCCcccccChhHhcCccc-CCEEECCCC-ccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCC
Confidence 44432111100 1113444 788888876 4555532 2 899999999998654444888999999999999 99
Q ss_pred ccccccCCCC-CCCCcCcEEEeCCCCCccCC
Q 046764 1053 NLVSFPKGGL-PSTQLRDPDITGCQKLEALP 1082 (1113)
Q Consensus 1053 ~L~slp~~~~-~~~sL~~L~l~~C~~L~~l~ 1082 (1113)
++..+|...+ .+++|+.|++++|+---..|
T Consensus 382 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 382 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 9999987654 66799999999865443333
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.81 E-value=8.4e-19 Score=208.19 Aligned_cols=309 Identities=18% Similarity=0.109 Sum_probs=159.7
Q ss_pred ChhhhccccccEEecccccccccccccccCCCcceEEEcCCceecccccccccccc-ccccccceeeccccCccChhhHH
Q 046764 625 PESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNFDFCCWKDIDSALQELK-LLHLHGALEISKLENVRDASEAG 703 (1113)
Q Consensus 625 P~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~~~~i~~~~~~~l~~L~-L~~L~g~L~i~~l~~~~~~~~~~ 703 (1113)
+.+++++++|++|++++| .+..+| +++.+++|++|++++|.+... + +..+. |++|. +.-+.+...
T Consensus 35 ~~~~~~l~~L~~L~Ls~n-~l~~~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~--Ls~N~l~~~------- 100 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNS-SITDMT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLA--CDSNKLTNL------- 100 (457)
T ss_dssp EEEHHHHTTCCEEECCSS-CCCCCT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEE--CCSSCCSCC-------
T ss_pred ccChhHcCCCCEEEccCC-CcccCh-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEE--CcCCCCcee-------
Confidence 557899999999999995 677787 799999999999999866432 1 33333 33332 111111111
Q ss_pred HhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCCCCCcceEEEeccCccccccCcccccccccCCCcccceEecC
Q 046764 704 EAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGETLRFENMQEREDWIPYSSSQEVEFYGN 783 (1113)
Q Consensus 704 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~L~~~~~~~~l~~L~~L~~~Lpl~~l~~~~~~g~ 783 (1113)
.++.+++|+.|++++|...+ + .+..+++|+.|+++++.-..
T Consensus 101 --~~~~l~~L~~L~L~~N~l~~-----------l-~~~~l~~L~~L~l~~N~l~~------------------------- 141 (457)
T 3bz5_A 101 --DVTPLTKLTYLNCDTNKLTK-----------L-DVSQNPLLTYLNCARNTLTE------------------------- 141 (457)
T ss_dssp --CCTTCTTCCEEECCSSCCSC-----------C-CCTTCTTCCEEECTTSCCSC-------------------------
T ss_pred --ecCCCCcCCEEECCCCcCCe-----------e-cCCCCCcCCEEECCCCccce-------------------------
Confidence 14455555555555443211 0 13344455555554432110
Q ss_pred CCCCCCCCcceeeccccCcCcccccCCCCcccccCCCccEEEEecCcCcccccCCCCCCccEEEEecccCccccCCCCCc
Q 046764 784 GCLIPFPSLETLRFENMQEREDWIPYSSSQEVEVFPNLRDLFLLRCSKLLGTLPKHLPSLQKLVIQRCEKLLVDLPSLPS 863 (1113)
Q Consensus 784 ~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~lp~~l~~L~~L~L~~c~~L~~~l~~l~~ 863 (1113)
..+..+++|+.|+++++..+... ..+.+++|+.|++++| ++++ + .+..+++
T Consensus 142 l~l~~l~~L~~L~l~~n~~~~~~-------~~~~l~~L~~L~ls~n-~l~~-l--------------------~l~~l~~ 192 (457)
T 3bz5_A 142 IDVSHNTQLTELDCHLNKKITKL-------DVTPQTQLTTLDCSFN-KITE-L--------------------DVSQNKL 192 (457)
T ss_dssp CCCTTCTTCCEEECTTCSCCCCC-------CCTTCTTCCEEECCSS-CCCC-C--------------------CCTTCTT
T ss_pred eccccCCcCCEEECCCCCccccc-------ccccCCcCCEEECCCC-ccce-e--------------------ccccCCC
Confidence 01223444444444444322211 1223444444444444 3331 2 2334455
Q ss_pred ccEEEEeccCCCCcccCCCccccccccccCCCCCCcccccccCCCCCcCcccCCCCCCceEEEcccCCCcccccccCCCC
Q 046764 864 LNELKLGGCKKGGLQKGQPIIGRRIHYGCADTSSSLRVCLQCCNSLTNNARVQLPLSLKDLSIAFCDNLRTLVEEEGIPK 943 (1113)
Q Consensus 864 L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~~l~~L~~L~~~~N~L~~~~~l~~l~~L~~L~Ls~c~~L~~l~~~~~lp~ 943 (1113)
|+.|++++|..... .+..+++|+.|++..|.++... +..+++|+.|++++|. ++.+ +..
T Consensus 193 L~~L~l~~N~l~~~--------------~l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~-l~~~-~~~---- 251 (457)
T 3bz5_A 193 LNRLNCDTNNITKL--------------DLNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNP-LTEL-DVS---- 251 (457)
T ss_dssp CCEEECCSSCCSCC--------------CCTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSC-CSCC-CCT----
T ss_pred CCEEECcCCcCCee--------------ccccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCc-CCCc-CHH----
Confidence 55555555544331 1344455555555555555221 4555666666666554 3333 211
Q ss_pred CcccCCCCcc----------EEEeecCCCCcccCCCCCcCCccCeEEEccccccccccccCCCCCCCeEEEEecCCCccc
Q 046764 944 GSRKYSSHLE----------CLHILSCPSPTSIFSENELPATLQRLEVNSCSKLALLTLSGNLPQGPKYLELTSCSKWES 1013 (1113)
Q Consensus 944 ~l~~~l~~L~----------~L~L~~c~~L~~ll~~~~l~~sL~~L~i~~c~~L~~l~l~~~lp~~L~~L~L~~c~~L~~ 1013 (1113)
.+++|+ .|++++|..+.. +|...++ +|+.|++++|..+..++. ..+. |+.|++++|
T Consensus 252 ----~l~~L~~L~l~~n~L~~L~l~~n~~~~~-~~~~~l~-~L~~L~Ls~n~~l~~l~~--~~~~-L~~L~l~~~----- 317 (457)
T 3bz5_A 252 ----TLSKLTTLHCIQTDLLEIDLTHNTQLIY-FQAEGCR-KIKELDVTHNTQLYLLDC--QAAG-ITELDLSQN----- 317 (457)
T ss_dssp ----TCTTCCEEECTTCCCSCCCCTTCTTCCE-EECTTCT-TCCCCCCTTCTTCCEEEC--TTCC-CSCCCCTTC-----
T ss_pred ----HCCCCCEEeccCCCCCEEECCCCccCCc-ccccccc-cCCEEECCCCcccceecc--CCCc-ceEechhhc-----
Confidence 233333 444444444443 3333333 555555555555544432 1222 444444444
Q ss_pred cCCCCCCccEEEEeecCCCCcccccCCCCCCcCeeee-cccccccc
Q 046764 1014 IADNNTSLQVITVFRCKNLKTLPDGLHKLNNLQAFTI-CKNLVSFP 1058 (1113)
Q Consensus 1014 lp~~l~sL~~L~Ls~c~~l~~lP~~l~~L~sL~~L~L-cn~L~slp 1058 (1113)
++|++|++++|. ++.++ +..+++|+.|++ .|++..++
T Consensus 318 -----~~L~~L~L~~N~-l~~l~--l~~l~~L~~L~l~~N~l~~l~ 355 (457)
T 3bz5_A 318 -----PKLVYLYLNNTE-LTELD--VSHNTKLKSLSCVNAHIQDFS 355 (457)
T ss_dssp -----TTCCEEECTTCC-CSCCC--CTTCTTCSEEECCSSCCCBCT
T ss_pred -----ccCCEEECCCCc-ccccc--cccCCcCcEEECCCCCCCCcc
Confidence 788888888864 55564 888888999988 77777653
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.81 E-value=5.1e-19 Score=206.23 Aligned_cols=281 Identities=17% Similarity=0.088 Sum_probs=141.3
Q ss_pred CCccccEEecCCCCCcccChh-hhccccccEEeccccccccccc-ccccCCCcceEEEcCCceecccccccccccc-ccc
Q 046764 607 DLKHLRHLDLSETDIQILPES-VNTLYNLRMLMLQKCNQLEKMC-SDMGNLLKLHHLDNFDFCCWKDIDSALQELK-LLH 683 (1113)
Q Consensus 607 ~L~~Lr~L~Ls~~~i~~LP~~-i~~L~~L~~LdL~~c~~l~~LP-~~i~~L~~L~~L~L~~~~i~~~~~~~l~~L~-L~~ 683 (1113)
.+.+|++|+++++.++.+|.. +..+++|++|++++| .+..+| ..++++++|++|++++|.+....+..+..+. |+.
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 356777777777777777654 567777777777774 445554 3667777777777777765444444444444 443
Q ss_pred cccceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCCCCCcceEEEeccCccccccCc
Q 046764 684 LHGALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGETLRFENM 763 (1113)
Q Consensus 684 L~g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~L~~~~~~~~l~~L 763 (1113)
|. +.-+.+..+. ...+..+++|+.|+++.|..... ....+..+++|+.|+++++....
T Consensus 122 L~--L~~n~l~~l~------~~~~~~l~~L~~L~L~~n~l~~~---------~~~~~~~l~~L~~L~l~~n~l~~----- 179 (390)
T 3o6n_A 122 LV--LERNDLSSLP------RGIFHNTPKLTTLSMSNNNLERI---------EDDTFQATTSLQNLQLSSNRLTH----- 179 (390)
T ss_dssp EE--CCSSCCCCCC------TTTTTTCTTCCEEECCSSCCCBC---------CTTTTSSCTTCCEEECCSSCCSB-----
T ss_pred EE--CCCCccCcCC------HHHhcCCCCCcEEECCCCccCcc---------ChhhccCCCCCCEEECCCCcCCc-----
Confidence 33 1111111111 11245566666666665542110 11234455566666665543211
Q ss_pred ccccccccCCCcccceEecCCCCCCCCCcceeeccccCcCcccccCCCCcccccCCCccEEEEecCcCcccccCCCCCCc
Q 046764 764 QEREDWIPYSSSQEVEFYGNGCLIPFPSLETLRFENMQEREDWIPYSSSQEVEVFPNLRDLFLLRCSKLLGTLPKHLPSL 843 (1113)
Q Consensus 764 ~~L~~~Lpl~~l~~~~~~g~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~lp~~l~~L 843 (1113)
..+..+++|+.|+++++. +.. ....++|+.|++++| .+...-...+++|
T Consensus 180 --------------------~~~~~l~~L~~L~l~~n~-l~~---------~~~~~~L~~L~l~~n-~l~~~~~~~~~~L 228 (390)
T 3o6n_A 180 --------------------VDLSLIPSLFHANVSYNL-LST---------LAIPIAVEELDASHN-SINVVRGPVNVEL 228 (390)
T ss_dssp --------------------CCGGGCTTCSEEECCSSC-CSE---------EECCSSCSEEECCSS-CCCEEECCCCSSC
T ss_pred --------------------cccccccccceeeccccc-ccc---------cCCCCcceEEECCCC-eeeeccccccccc
Confidence 112335566666665432 111 112345666666665 3441212234556
Q ss_pred cEEEEecccCcc-ccCCCCCcccEEEEeccCCCCcccCCCccccccccccCCCCCCcccccccCCCCC-cCcccCCCCCC
Q 046764 844 QKLVIQRCEKLL-VDLPSLPSLNELKLGGCKKGGLQKGQPIIGRRIHYGCADTSSSLRVCLQCCNSLT-NNARVQLPLSL 921 (1113)
Q Consensus 844 ~~L~L~~c~~L~-~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~~l~~L~~L~~~~N~L~-~~~~l~~l~~L 921 (1113)
+.|++++|..-. ..+..+++|++|++++|...... ...+..+++|+.|++.+|.++ .+..+..+++|
T Consensus 229 ~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-----------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L 297 (390)
T 3o6n_A 229 TILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIM-----------YHPFVKMQRLERLYISNNRLVALNLYGQPIPTL 297 (390)
T ss_dssp CEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEE-----------SGGGTTCSSCCEEECCSSCCCEEECSSSCCTTC
T ss_pred cEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcC-----------hhHccccccCCEEECCCCcCcccCcccCCCCCC
Confidence 666665553111 13344566666666666554422 234455555555555555555 33333445555
Q ss_pred ceEEEcccCCCcccccccCCCCCcccCCCCccEEEeecC
Q 046764 922 KDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHILSC 960 (1113)
Q Consensus 922 ~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~c 960 (1113)
+.|++++|. +..+ +. .+ ..+++|++|++++|
T Consensus 298 ~~L~L~~n~-l~~~-~~-----~~-~~l~~L~~L~L~~N 328 (390)
T 3o6n_A 298 KVLDLSHNH-LLHV-ER-----NQ-PQFDRLENLYLDHN 328 (390)
T ss_dssp CEEECCSSC-CCCC-GG-----GH-HHHTTCSEEECCSS
T ss_pred CEEECCCCc-ceec-Cc-----cc-cccCcCCEEECCCC
Confidence 555555553 3333 21 12 14455555555554
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.80 E-value=4.9e-19 Score=202.78 Aligned_cols=276 Identities=16% Similarity=0.114 Sum_probs=161.0
Q ss_pred ccCCCCCeeEEccCCcC-----CCCCCccccEEecCCCCCcccChhhhccccccEEecccccccccccccccCCCcceEE
Q 046764 587 PFFEFENLQTFLPTTVS-----HGGDLKHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHL 661 (1113)
Q Consensus 587 ~~~~l~~Lr~L~~~~~~-----~i~~L~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L 661 (1113)
.+..+++++.|.+.+.. .++.+++|++|++++|.++.+|. +..+++|++|++++| .+..+| .+.++++|++|
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLREL 115 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEE
T ss_pred cchhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEE
Confidence 34467788888887765 67889999999999999999987 999999999999996 677776 59999999999
Q ss_pred EcCCceeccccccccccccccccccceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCC
Q 046764 662 DNFDFCCWKDIDSALQELKLLHLHGALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLK 741 (1113)
Q Consensus 662 ~L~~~~i~~~~~~~l~~L~L~~L~g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~ 741 (1113)
++++|.+....+ +..+++|+.|++++|.... .+..+.
T Consensus 116 ~l~~n~i~~~~~---------------------------------~~~l~~L~~L~l~~n~~~~----------~~~~~~ 152 (347)
T 4fmz_A 116 YLNEDNISDISP---------------------------------LANLTKMYSLNLGANHNLS----------DLSPLS 152 (347)
T ss_dssp ECTTSCCCCCGG---------------------------------GTTCTTCCEEECTTCTTCC----------CCGGGT
T ss_pred ECcCCcccCchh---------------------------------hccCCceeEEECCCCCCcc----------cccchh
Confidence 999986532111 2334445555554442111 112234
Q ss_pred CCCCcceEEEeccCccccccCcccccccccCCCcccceEecCCCCCCCCCcceeeccccCcCcccccCCCCcccccCCCc
Q 046764 742 PHQNLERFCISGYGETLRFENMQEREDWIPYSSSQEVEFYGNGCLIPFPSLETLRFENMQEREDWIPYSSSQEVEVFPNL 821 (1113)
Q Consensus 742 ~~~~L~~L~L~~~~~~~~l~~L~~L~~~Lpl~~l~~~~~~g~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L 821 (1113)
.+++|+.|+++++.... + ..+..+++|+.|+++++. +.... ....+++|
T Consensus 153 ~l~~L~~L~l~~~~~~~----------------~--------~~~~~l~~L~~L~l~~n~-l~~~~------~~~~l~~L 201 (347)
T 4fmz_A 153 NMTGLNYLTVTESKVKD----------------V--------TPIANLTDLYSLSLNYNQ-IEDIS------PLASLTSL 201 (347)
T ss_dssp TCTTCCEEECCSSCCCC----------------C--------GGGGGCTTCSEEECTTSC-CCCCG------GGGGCTTC
T ss_pred hCCCCcEEEecCCCcCC----------------c--------hhhccCCCCCEEEccCCc-ccccc------cccCCCcc
Confidence 44555555555432110 0 112334555555555442 11111 13345566
Q ss_pred cEEEEecCcCccccc-CCCCCCccEEEEeccc--CccccCCCCCcccEEEEeccCCCCcccCCCccccccccccCCCCCC
Q 046764 822 RDLFLLRCSKLLGTL-PKHLPSLQKLVIQRCE--KLLVDLPSLPSLNELKLGGCKKGGLQKGQPIIGRRIHYGCADTSSS 898 (1113)
Q Consensus 822 ~~L~L~~c~~L~~~l-p~~l~~L~~L~L~~c~--~L~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~~l~~ 898 (1113)
+.|++++| .+.+.. ...+++|++|++++|. .+. .+..+++|++|++++|..... ..+..+++
T Consensus 202 ~~L~l~~n-~l~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~-------------~~~~~l~~ 266 (347)
T 4fmz_A 202 HYFTAYVN-QITDITPVANMTRLNSLKIGNNKITDLS-PLANLSQLTWLEIGTNQISDI-------------NAVKDLTK 266 (347)
T ss_dssp CEEECCSS-CCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCC-------------GGGTTCTT
T ss_pred ceeecccC-CCCCCchhhcCCcCCEEEccCCccCCCc-chhcCCCCCEEECCCCccCCC-------------hhHhcCCC
Confidence 66666655 333111 1244555666665553 111 244566666666666654431 23455566
Q ss_pred cccccccCCCCCcCcccCCCCCCceEEEcccCCCcccccccCCCCCcccCCCCccEEEeecCC
Q 046764 899 LRVCLQCCNSLTNNARVQLPLSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHILSCP 961 (1113)
Q Consensus 899 L~~L~~~~N~L~~~~~l~~l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~c~ 961 (1113)
|+.|++.+|.+.....+..+++|+.|++++|. +... .|..+ ..+++|++|++++|+
T Consensus 267 L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~-l~~~-----~~~~l-~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 267 LKMLNVGSNQISDISVLNNLSQLNSLFLNNNQ-LGNE-----DMEVI-GGLTNLTTLFLSQNH 322 (347)
T ss_dssp CCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCGG-----GHHHH-HTCTTCSEEECCSSS
T ss_pred cCEEEccCCccCCChhhcCCCCCCEEECcCCc-CCCc-----ChhHh-hccccCCEEEccCCc
Confidence 66666666566544455666777777777765 3333 11112 256677777777665
No 40
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.80 E-value=2.2e-18 Score=206.52 Aligned_cols=305 Identities=18% Similarity=0.187 Sum_probs=166.2
Q ss_pred cEEecCCCCCcccChhhhccccccEEecccccccccc-cccccCCCcceEEEcCCceeccccccccccccccccccceee
Q 046764 612 RHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKM-CSDMGNLLKLHHLDNFDFCCWKDIDSALQELKLLHLHGALEI 690 (1113)
Q Consensus 612 r~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~L-P~~i~~L~~L~~L~L~~~~i~~~~~~~l~~L~L~~L~g~L~i 690 (1113)
+.++.++++++.+|..+. .+|++|+|++| .+..+ |..+.++++|++|++++|.+....+
T Consensus 14 ~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~----------------- 73 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP--TETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEP----------------- 73 (477)
T ss_dssp TEEECCSCCCSSCCSCCC--TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECT-----------------
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCccCEeCh-----------------
Confidence 567777778888887664 57888888874 45555 4667888888888888764322111
Q ss_pred ccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCCCCCcceEEEeccCccccccCcccccccc
Q 046764 691 SKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGETLRFENMQEREDWI 770 (1113)
Q Consensus 691 ~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~L~~~~~~~~l~~L~~L~~~L 770 (1113)
..+.++++|+.|+++.|.... +
T Consensus 74 --------------~~~~~l~~L~~L~L~~n~l~~--------------~------------------------------ 95 (477)
T 2id5_A 74 --------------GAFNNLFNLRTLGLRSNRLKL--------------I------------------------------ 95 (477)
T ss_dssp --------------TTTTTCTTCCEEECCSSCCCS--------------C------------------------------
T ss_pred --------------hhhhCCccCCEEECCCCcCCc--------------c------------------------------
Confidence 124455666666665543100 0
Q ss_pred cCCCcccceEecCCCCCCCCCcceeeccccCcCcccccCCCCcccccCCCccEEEEecCcCcccccCCCCCCccEEEEec
Q 046764 771 PYSSSQEVEFYGNGCLIPFPSLETLRFENMQEREDWIPYSSSQEVEVFPNLRDLFLLRCSKLLGTLPKHLPSLQKLVIQR 850 (1113)
Q Consensus 771 pl~~l~~~~~~g~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~lp~~l~~L~~L~L~~ 850 (1113)
| ...+..+++|+.|+|+++.-. ... +..+..+++|+.|++++| .+.+..+.
T Consensus 96 ~-----------~~~~~~l~~L~~L~Ls~n~i~-~~~----~~~~~~l~~L~~L~l~~n-~l~~~~~~------------ 146 (477)
T 2id5_A 96 P-----------LGVFTGLSNLTKLDISENKIV-ILL----DYMFQDLYNLKSLEVGDN-DLVYISHR------------ 146 (477)
T ss_dssp C-----------TTSSTTCTTCCEEECTTSCCC-EEC----TTTTTTCTTCCEEEECCT-TCCEECTT------------
T ss_pred C-----------cccccCCCCCCEEECCCCccc-cCC----hhHccccccCCEEECCCC-ccceeChh------------
Confidence 0 012234556666666654321 111 223445666666666665 34312121
Q ss_pred ccCccccCCCCCcccEEEEeccCCCCcccCCCccccccccccCCCCCCcccccccCCCCC--cCcccCCCCCCceEEEcc
Q 046764 851 CEKLLVDLPSLPSLNELKLGGCKKGGLQKGQPIIGRRIHYGCADTSSSLRVCLQCCNSLT--NNARVQLPLSLKDLSIAF 928 (1113)
Q Consensus 851 c~~L~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~~l~~L~~L~~~~N~L~--~~~~l~~l~~L~~L~Ls~ 928 (1113)
.+..+++|++|++++|...... ...+..+++|+.|.+..|.+. ....+..+++|+.|++++
T Consensus 147 ------~~~~l~~L~~L~l~~n~l~~~~-----------~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 209 (477)
T 2id5_A 147 ------AFSGLNSLEQLTLEKCNLTSIP-----------TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209 (477)
T ss_dssp ------SSTTCTTCCEEEEESCCCSSCC-----------HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEEC
T ss_pred ------hccCCCCCCEEECCCCcCcccC-----------hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCC
Confidence 4556788899999988766532 245666777777777766666 445566777777777777
Q ss_pred cCCCcccccccCCCCCcccCCCCccEEEeecCCCCcccCCC---CCcCCccCeEEEccccccccccccCCCCCCCeEEEE
Q 046764 929 CDNLRTLVEEEGIPKGSRKYSSHLECLHILSCPSPTSIFSE---NELPATLQRLEVNSCSKLALLTLSGNLPQGPKYLEL 1005 (1113)
Q Consensus 929 c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~c~~L~~ll~~---~~l~~sL~~L~i~~c~~L~~l~l~~~lp~~L~~L~L 1005 (1113)
|..+..+ +... . ...+|++|++++|. ++. ++. ..++ +|+.|+++++.
T Consensus 210 ~~~~~~~-~~~~-----~-~~~~L~~L~l~~n~-l~~-~~~~~~~~l~-~L~~L~Ls~n~-------------------- 259 (477)
T 2id5_A 210 WPYLDTM-TPNC-----L-YGLNLTSLSITHCN-LTA-VPYLAVRHLV-YLRFLNLSYNP-------------------- 259 (477)
T ss_dssp CTTCCEE-CTTT-----T-TTCCCSEEEEESSC-CCS-CCHHHHTTCT-TCCEEECCSSC--------------------
T ss_pred Ccccccc-Cccc-----c-cCccccEEECcCCc-ccc-cCHHHhcCcc-ccCeeECCCCc--------------------
Confidence 7655554 3222 1 33467777777653 333 221 1122 44444444432
Q ss_pred ecCCCccccCCC----CCCccEEEEeecCCCCcccccCCCCCCcCeeee-ccccccccCCCC-CCCCcCcEEEeCC
Q 046764 1006 TSCSKWESIADN----NTSLQVITVFRCKNLKTLPDGLHKLNNLQAFTI-CKNLVSFPKGGL-PSTQLRDPDITGC 1075 (1113)
Q Consensus 1006 ~~c~~L~~lp~~----l~sL~~L~Ls~c~~l~~lP~~l~~L~sL~~L~L-cn~L~slp~~~~-~~~sL~~L~l~~C 1075 (1113)
+..++.. +++|++|++++|......|..+..+++|+.|++ .|++..+|...+ .+++|+.|+++++
T Consensus 260 -----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 260 -----ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp -----CCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred -----CCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCC
Confidence 3333221 455555555554322222445555555555555 555555544332 2345555555543
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=1.4e-18 Score=213.94 Aligned_cols=300 Identities=17% Similarity=0.095 Sum_probs=159.4
Q ss_pred CccccEEecCCCCCcccChh-hhccccccEEeccccccccccc-ccccCCCcceEEEcCCceecccccccccccc-cccc
Q 046764 608 LKHLRHLDLSETDIQILPES-VNTLYNLRMLMLQKCNQLEKMC-SDMGNLLKLHHLDNFDFCCWKDIDSALQELK-LLHL 684 (1113)
Q Consensus 608 L~~Lr~L~Ls~~~i~~LP~~-i~~L~~L~~LdL~~c~~l~~LP-~~i~~L~~L~~L~L~~~~i~~~~~~~l~~L~-L~~L 684 (1113)
+.++++|++++|.+..+|.. ++++++|++|+|++| .+..+| ..++.+++|++|++++|.+....+..+..+. |..|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 45666666666666666543 456666666666664 344443 3566666666666666655444444444444 3333
Q ss_pred ccceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCCCCCcceEEEeccCccccccCcc
Q 046764 685 HGALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGETLRFENMQ 764 (1113)
Q Consensus 685 ~g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~L~~~~~~~~l~~L~ 764 (1113)
. +.-+.+..+ ....+..+++|+.|+++.|...+. ....+..+++|+.|+++++....
T Consensus 129 ~--L~~n~l~~l------~~~~~~~l~~L~~L~Ls~N~l~~~---------~~~~~~~l~~L~~L~L~~N~l~~------ 185 (597)
T 3oja_B 129 V--LERNDLSSL------PRGIFHNTPKLTTLSMSNNNLERI---------EDDTFQATTSLQNLQLSSNRLTH------ 185 (597)
T ss_dssp E--CCSSCCCCC------CTTTTTTCTTCCEEECCSSCCCBC---------CTTTTTTCTTCCEEECTTSCCSB------
T ss_pred E--eeCCCCCCC------CHHHhccCCCCCEEEeeCCcCCCC---------ChhhhhcCCcCcEEECcCCCCCC------
Confidence 2 111111111 111245667777777766652211 12335556667777776643211
Q ss_pred cccccccCCCcccceEecCCCCCCCCCcceeeccccCcCcccccCCCCcccccCCCccEEEEecCcCcccccCCCCCCcc
Q 046764 765 EREDWIPYSSSQEVEFYGNGCLIPFPSLETLRFENMQEREDWIPYSSSQEVEVFPNLRDLFLLRCSKLLGTLPKHLPSLQ 844 (1113)
Q Consensus 765 ~L~~~Lpl~~l~~~~~~g~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~lp~~l~~L~ 844 (1113)
..+..+++|+.|+++++. +.. ....++|+.|++++| .+....+...++|+
T Consensus 186 -------------------~~~~~l~~L~~L~l~~n~-l~~---------l~~~~~L~~L~ls~n-~l~~~~~~~~~~L~ 235 (597)
T 3oja_B 186 -------------------VDLSLIPSLFHANVSYNL-LST---------LAIPIAVEELDASHN-SINVVRGPVNVELT 235 (597)
T ss_dssp -------------------CCGGGCTTCSEEECCSSC-CSE---------EECCTTCSEEECCSS-CCCEEECSCCSCCC
T ss_pred -------------------cChhhhhhhhhhhcccCc-ccc---------ccCCchhheeeccCC-cccccccccCCCCC
Confidence 112346667777666542 111 123456777777776 45422223445677
Q ss_pred EEEEecccCc-cccCCCCCcccEEEEeccCCCCcccCCCccccccccccCCCCCCcccccccCCCCC-cCcccCCCCCCc
Q 046764 845 KLVIQRCEKL-LVDLPSLPSLNELKLGGCKKGGLQKGQPIIGRRIHYGCADTSSSLRVCLQCCNSLT-NNARVQLPLSLK 922 (1113)
Q Consensus 845 ~L~L~~c~~L-~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~~l~~L~~L~~~~N~L~-~~~~l~~l~~L~ 922 (1113)
.|++++|..- ...+..+++|+.|++++|...... +..+..+++|+.|++.+|.+. .+..+..+++|+
T Consensus 236 ~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~-----------~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~ 304 (597)
T 3oja_B 236 ILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIM-----------YHPFVKMQRLERLYISNNRLVALNLYGQPIPTLK 304 (597)
T ss_dssp EEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEE-----------SGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCC
T ss_pred EEECCCCCCCCChhhccCCCCCEEECCCCccCCCC-----------HHHhcCccCCCEEECCCCCCCCCCcccccCCCCc
Confidence 7777766311 123445677777777777665532 245566667777766666666 444445567777
Q ss_pred eEEEcccCCCcccccccCCCCCcccCCCCccEEEeecCCCCcccCCCCCcCCccCeEEEcc
Q 046764 923 DLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHILSCPSPTSIFSENELPATLQRLEVNS 983 (1113)
Q Consensus 923 ~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~c~~L~~ll~~~~l~~sL~~L~i~~ 983 (1113)
.|++++|. +..+ |..+ ..+++|+.|++++|. +.. ++...++ +|+.|++++
T Consensus 305 ~L~Ls~N~-l~~i------~~~~-~~l~~L~~L~L~~N~-l~~-~~~~~~~-~L~~L~l~~ 354 (597)
T 3oja_B 305 VLDLSHNH-LLHV------ERNQ-PQFDRLENLYLDHNS-IVT-LKLSTHH-TLKNLTLSH 354 (597)
T ss_dssp EEECCSSC-CCCC------GGGH-HHHTTCSEEECCSSC-CCC-CCCCTTC-CCSEEECCS
T ss_pred EEECCCCC-CCcc------Cccc-ccCCCCCEEECCCCC-CCC-cChhhcC-CCCEEEeeC
Confidence 77777664 3333 2223 256667777776654 233 3333333 455555544
No 42
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.77 E-value=8.5e-18 Score=201.40 Aligned_cols=271 Identities=21% Similarity=0.152 Sum_probs=160.1
Q ss_pred CCCCCccccEEecCCCCCccc-ChhhhccccccEEeccccccccccccc-ccCCCcceEEEcCCceeccccccccccccc
Q 046764 604 HGGDLKHLRHLDLSETDIQIL-PESVNTLYNLRMLMLQKCNQLEKMCSD-MGNLLKLHHLDNFDFCCWKDIDSALQELKL 681 (1113)
Q Consensus 604 ~i~~L~~Lr~L~Ls~~~i~~L-P~~i~~L~~L~~LdL~~c~~l~~LP~~-i~~L~~L~~L~L~~~~i~~~~~~~l~~L~L 681 (1113)
.|.++++|++|+|++|.++.+ |..|+++++|++|+|++| .+..+|.. ++++++|++|++++|.+....+
T Consensus 51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-------- 121 (477)
T 2id5_A 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIVILLD-------- 121 (477)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECTTSCCCEECT--------
T ss_pred HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEECCCCccccCCh--------
Confidence 445555555555555555544 445555555555555552 34444433 3555555555555553322222
Q ss_pred cccccceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCCCCCcceEEEeccCcccccc
Q 046764 682 LHLHGALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGETLRFE 761 (1113)
Q Consensus 682 ~~L~g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~L~~~~~~~~l~ 761 (1113)
..+..+++|+.|+++.|.... .....+..+++|+.|+++++....
T Consensus 122 -----------------------~~~~~l~~L~~L~l~~n~l~~---------~~~~~~~~l~~L~~L~l~~n~l~~--- 166 (477)
T 2id5_A 122 -----------------------YMFQDLYNLKSLEVGDNDLVY---------ISHRAFSGLNSLEQLTLEKCNLTS--- 166 (477)
T ss_dssp -----------------------TTTTTCTTCCEEEECCTTCCE---------ECTTSSTTCTTCCEEEEESCCCSS---
T ss_pred -----------------------hHccccccCCEEECCCCccce---------eChhhccCCCCCCEEECCCCcCcc---
Confidence 235556667777776554211 112345556677777776643211
Q ss_pred CcccccccccCCCcccceEecCCCCCCCCCcceeeccccCcCcccccCCCCcccccCCCccEEEEecCcCcccccCC---
Q 046764 762 NMQEREDWIPYSSSQEVEFYGNGCLIPFPSLETLRFENMQEREDWIPYSSSQEVEVFPNLRDLFLLRCSKLLGTLPK--- 838 (1113)
Q Consensus 762 ~L~~L~~~Lpl~~l~~~~~~g~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~lp~--- 838 (1113)
+. ...+..+++|+.|++.++.. .... +..+..+++|+.|++++|+.+. .+|.
T Consensus 167 ----~~---------------~~~l~~l~~L~~L~l~~n~i-~~~~----~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~ 221 (477)
T 2id5_A 167 ----IP---------------TEALSHLHGLIVLRLRHLNI-NAIR----DYSFKRLYRLKVLEISHWPYLD-TMTPNCL 221 (477)
T ss_dssp ----CC---------------HHHHTTCTTCCEEEEESCCC-CEEC----TTCSCSCTTCCEEEEECCTTCC-EECTTTT
T ss_pred ----cC---------------hhHhcccCCCcEEeCCCCcC-cEeC----hhhcccCcccceeeCCCCcccc-ccCcccc
Confidence 00 01134466777777776532 2221 2245567788888888875554 4543
Q ss_pred CCCCccEEEEecccCc--c-ccCCCCCcccEEEEeccCCCCcccCCCccccccccccCCCCCCcccccccCCCCC--cCc
Q 046764 839 HLPSLQKLVIQRCEKL--L-VDLPSLPSLNELKLGGCKKGGLQKGQPIIGRRIHYGCADTSSSLRVCLQCCNSLT--NNA 913 (1113)
Q Consensus 839 ~l~~L~~L~L~~c~~L--~-~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~~l~~L~~L~~~~N~L~--~~~ 913 (1113)
...+|+.|++++|..- . ..+..+++|+.|++++|...... ...+..+++|+.|.+.+|.+. .+.
T Consensus 222 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----------~~~~~~l~~L~~L~L~~n~l~~~~~~ 290 (477)
T 2id5_A 222 YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE-----------GSMLHELLRLQEIQLVGGQLAVVEPY 290 (477)
T ss_dssp TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEEC-----------TTSCTTCTTCCEEECCSSCCSEECTT
T ss_pred cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccC-----------hhhccccccCCEEECCCCccceECHH
Confidence 2347888888877422 1 13456788888888888766532 356778888888888888888 567
Q ss_pred ccCCCCCCceEEEcccCCCcccccccCCCCCcccCCCCccEEEeecCC
Q 046764 914 RVQLPLSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHILSCP 961 (1113)
Q Consensus 914 ~l~~l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~c~ 961 (1113)
.+..+++|+.|++++|. ++.+ +... + ..+++|++|++++++
T Consensus 291 ~~~~l~~L~~L~L~~N~-l~~~-~~~~----~-~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 291 AFRGLNYLRVLNVSGNQ-LTTL-EESV----F-HSVGNLETLILDSNP 331 (477)
T ss_dssp TBTTCTTCCEEECCSSC-CSCC-CGGG----B-SCGGGCCEEECCSSC
T ss_pred HhcCcccCCEEECCCCc-Ccee-CHhH----c-CCCcccCEEEccCCC
Confidence 78888999999998885 5555 3222 2 367889999988765
No 43
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.74 E-value=1.3e-17 Score=194.27 Aligned_cols=292 Identities=14% Similarity=0.045 Sum_probs=191.6
Q ss_pred CCCCeeEEccCCcC-------CCCCCccccEEecCCCCCcccC-hhhhccccccEEeccccccccccc-ccccCCCcceE
Q 046764 590 EFENLQTFLPTTVS-------HGGDLKHLRHLDLSETDIQILP-ESVNTLYNLRMLMLQKCNQLEKMC-SDMGNLLKLHH 660 (1113)
Q Consensus 590 ~l~~Lr~L~~~~~~-------~i~~L~~Lr~L~Ls~~~i~~LP-~~i~~L~~L~~LdL~~c~~l~~LP-~~i~~L~~L~~ 660 (1113)
.++++|.+.+.+.. .+.++++|++|+|++|.+..+| ..++.+++|++|+|++| .+..+| ..++++++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCE
Confidence 35677777766543 3567788888888888888775 47888888888888885 455554 45788888888
Q ss_pred EEcCCceecccccccccccc-ccccccceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhcc
Q 046764 661 LDNFDFCCWKDIDSALQELK-LLHLHGALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDM 739 (1113)
Q Consensus 661 L~L~~~~i~~~~~~~l~~L~-L~~L~g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~ 739 (1113)
|++++|.+....+..+..+. |++|. +.-+.+... ....+..+++|+.|+++.|..... .
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~--L~~n~l~~~------~~~~~~~l~~L~~L~l~~n~l~~~------------~ 181 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLS--MSNNNLERI------EDDTFQATTSLQNLQLSSNRLTHV------------D 181 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEE--CCSSCCCBC------CTTTTSSCTTCCEEECCSSCCSBC------------C
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEE--CCCCccCcc------ChhhccCCCCCCEEECCCCcCCcc------------c
Confidence 88888876543333345565 55554 222222221 223477888899999887753211 2
Q ss_pred CCCCCCcceEEEeccCccccccCcccccccccCCCcccceEecCCCCCCCCCcceeeccccCcCcccccCCCCcccccCC
Q 046764 740 LKPHQNLERFCISGYGETLRFENMQEREDWIPYSSSQEVEFYGNGCLIPFPSLETLRFENMQEREDWIPYSSSQEVEVFP 819 (1113)
Q Consensus 740 L~~~~~L~~L~L~~~~~~~~l~~L~~L~~~Lpl~~l~~~~~~g~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~ 819 (1113)
+..+++|+.|+++++... .+...++|+.|+++++.- .... ...++
T Consensus 182 ~~~l~~L~~L~l~~n~l~---------------------------~~~~~~~L~~L~l~~n~l-~~~~-------~~~~~ 226 (390)
T 3o6n_A 182 LSLIPSLFHANVSYNLLS---------------------------TLAIPIAVEELDASHNSI-NVVR-------GPVNV 226 (390)
T ss_dssp GGGCTTCSEEECCSSCCS---------------------------EEECCSSCSEEECCSSCC-CEEE-------CCCCS
T ss_pred cccccccceeeccccccc---------------------------ccCCCCcceEEECCCCee-eecc-------ccccc
Confidence 344678888888764321 112345777777776532 2221 12357
Q ss_pred CccEEEEecCcCcccccC--CCCCCccEEEEecccCc---cccCCCCCcccEEEEeccCCCCcccCCCccccccccccCC
Q 046764 820 NLRDLFLLRCSKLLGTLP--KHLPSLQKLVIQRCEKL---LVDLPSLPSLNELKLGGCKKGGLQKGQPIIGRRIHYGCAD 894 (1113)
Q Consensus 820 ~L~~L~L~~c~~L~~~lp--~~l~~L~~L~L~~c~~L---~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~ 894 (1113)
+|+.|++++| .+. ..+ ..+++|++|++++|..- ...+..+++|++|++++|...... ..+.
T Consensus 227 ~L~~L~l~~n-~l~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~------------~~~~ 292 (390)
T 3o6n_A 227 ELTILKLQHN-NLT-DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN------------LYGQ 292 (390)
T ss_dssp SCCEEECCSS-CCC-CCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEE------------CSSS
T ss_pred cccEEECCCC-CCc-ccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccC------------cccC
Confidence 7888888887 454 222 25678888888877422 234556888888888888766532 2346
Q ss_pred CCCCcccccccCCCCC-cCcccCCCCCCceEEEcccCCCcccccccCCCCCcccCCCCccEEEeecCC
Q 046764 895 TSSSLRVCLQCCNSLT-NNARVQLPLSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHILSCP 961 (1113)
Q Consensus 895 ~l~~L~~L~~~~N~L~-~~~~l~~l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~c~ 961 (1113)
.+++|+.|++.+|.+. .+..+..+++|+.|++++|. ++.+ + + ..+++|+.|++++++
T Consensus 293 ~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~-i~~~-~-------~-~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 293 PIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTL-K-------L-STHHTLKNLTLSHND 350 (390)
T ss_dssp CCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC-CCCC-C-------C-CTTCCCSEEECCSSC
T ss_pred CCCCCCEEECCCCcceecCccccccCcCCEEECCCCc-ccee-C-------c-hhhccCCEEEcCCCC
Confidence 6788888888888887 55566778899999999886 5554 3 1 267889999998865
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=1.8e-17 Score=204.06 Aligned_cols=291 Identities=14% Similarity=0.049 Sum_probs=180.6
Q ss_pred CCCeeEEccCCcC-------CCCCCccccEEecCCCCCcccC-hhhhccccccEEecccccccccccc-cccCCCcceEE
Q 046764 591 FENLQTFLPTTVS-------HGGDLKHLRHLDLSETDIQILP-ESVNTLYNLRMLMLQKCNQLEKMCS-DMGNLLKLHHL 661 (1113)
Q Consensus 591 l~~Lr~L~~~~~~-------~i~~L~~Lr~L~Ls~~~i~~LP-~~i~~L~~L~~LdL~~c~~l~~LP~-~i~~L~~L~~L 661 (1113)
+++++.+.+.++. .++++++|++|+|++|.+..+| ..|+.+++|++|+|++|. +..+|. .++++++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEE
Confidence 4566666655543 3556777777777777777664 477777777777777753 444443 45777777777
Q ss_pred EcCCceecccccccccccc-ccccccceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccC
Q 046764 662 DNFDFCCWKDIDSALQELK-LLHLHGALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDML 740 (1113)
Q Consensus 662 ~L~~~~i~~~~~~~l~~L~-L~~L~g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L 740 (1113)
++++|.+....+..+..+. |..|. +.-+.+.. ..+..+..+++|+.|+++.|...+. .+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~--Ls~N~l~~------~~~~~~~~l~~L~~L~L~~N~l~~~------------~~ 188 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLS--MSNNNLER------IEDDTFQATTSLQNLQLSSNRLTHV------------DL 188 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEE--CCSSCCCB------CCTTTTTTCTTCCEEECTTSCCSBC------------CG
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEE--eeCCcCCC------CChhhhhcCCcCcEEECcCCCCCCc------------Ch
Confidence 7777766543333345555 55544 22222222 1223467778888888877653211 13
Q ss_pred CCCCCcceEEEeccCccccccCcccccccccCCCcccceEecCCCCCCCCCcceeeccccCcCcccccCCCCcccccCCC
Q 046764 741 KPHQNLERFCISGYGETLRFENMQEREDWIPYSSSQEVEFYGNGCLIPFPSLETLRFENMQEREDWIPYSSSQEVEVFPN 820 (1113)
Q Consensus 741 ~~~~~L~~L~L~~~~~~~~l~~L~~L~~~Lpl~~l~~~~~~g~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~ 820 (1113)
..+++|+.|+++++... .+...++|+.|+++++. +.... ...+++
T Consensus 189 ~~l~~L~~L~l~~n~l~---------------------------~l~~~~~L~~L~ls~n~-l~~~~-------~~~~~~ 233 (597)
T 3oja_B 189 SLIPSLFHANVSYNLLS---------------------------TLAIPIAVEELDASHNS-INVVR-------GPVNVE 233 (597)
T ss_dssp GGCTTCSEEECCSSCCS---------------------------EEECCTTCSEEECCSSC-CCEEE-------CSCCSC
T ss_pred hhhhhhhhhhcccCccc---------------------------cccCCchhheeeccCCc-ccccc-------cccCCC
Confidence 34567777777764321 12234567777777653 22211 122467
Q ss_pred ccEEEEecCcCcccccC--CCCCCccEEEEecccC---ccccCCCCCcccEEEEeccCCCCcccCCCccccccccccCCC
Q 046764 821 LRDLFLLRCSKLLGTLP--KHLPSLQKLVIQRCEK---LLVDLPSLPSLNELKLGGCKKGGLQKGQPIIGRRIHYGCADT 895 (1113)
Q Consensus 821 L~~L~L~~c~~L~~~lp--~~l~~L~~L~L~~c~~---L~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~~ 895 (1113)
|+.|++++| .+.+ .+ ..+++|+.|++++|.. .+..+..+++|+.|+|++|...... ..+..
T Consensus 234 L~~L~L~~n-~l~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~------------~~~~~ 299 (597)
T 3oja_B 234 LTILKLQHN-NLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN------------LYGQP 299 (597)
T ss_dssp CCEEECCSS-CCCC-CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEE------------CSSSC
T ss_pred CCEEECCCC-CCCC-ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCC------------ccccc
Confidence 777777777 4542 22 2567777777777742 1234556788888888888766532 24456
Q ss_pred CCCcccccccCCCCC-cCcccCCCCCCceEEEcccCCCcccccccCCCCCcccCCCCccEEEeecCC
Q 046764 896 SSSLRVCLQCCNSLT-NNARVQLPLSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHILSCP 961 (1113)
Q Consensus 896 l~~L~~L~~~~N~L~-~~~~l~~l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~c~ 961 (1113)
+++|+.|++.+|.+. .+..+..+++|+.|++++|. +..+ + + ..+++|+.|++++++
T Consensus 300 l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~-l~~~-~-------~-~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 300 IPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTL-K-------L-STHHTLKNLTLSHND 356 (597)
T ss_dssp CTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC-CCCC-C-------C-CTTCCCSEEECCSSC
T ss_pred CCCCcEEECCCCCCCccCcccccCCCCCEEECCCCC-CCCc-C-------h-hhcCCCCEEEeeCCC
Confidence 778888888887877 55566778899999998886 5444 2 1 267889999988765
No 45
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.71 E-value=1e-18 Score=215.30 Aligned_cols=367 Identities=15% Similarity=0.139 Sum_probs=201.0
Q ss_pred CCccccEEecCCCCCcc-cChhhhcc--ccccEEecccccccc--cccccccCCCcceEEEcCCceecccccc----ccc
Q 046764 607 DLKHLRHLDLSETDIQI-LPESVNTL--YNLRMLMLQKCNQLE--KMCSDMGNLLKLHHLDNFDFCCWKDIDS----ALQ 677 (1113)
Q Consensus 607 ~L~~Lr~L~Ls~~~i~~-LP~~i~~L--~~L~~LdL~~c~~l~--~LP~~i~~L~~L~~L~L~~~~i~~~~~~----~l~ 677 (1113)
.+++|++|+|++|.++. .+..++.+ .+|++|+|++|..+. .++.-+.++++|++|++++|.+...... ...
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 78899999999998774 35667664 459999999986432 2333345789999999999976544221 222
Q ss_pred ccc-ccccccceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCCCCCcceEEEeccCc
Q 046764 678 ELK-LLHLHGALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGE 756 (1113)
Q Consensus 678 ~L~-L~~L~g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~L~~~~~ 756 (1113)
.+. |++|. +..+.+..+ ........+..+++|+.|+++.|... .....+..+++|+.|.+.++.+
T Consensus 190 ~~~~L~~L~--L~~n~~~~~--~~~~l~~~~~~~~~L~~L~L~~~~~~----------~l~~~~~~~~~L~~L~l~~~~~ 255 (592)
T 3ogk_B 190 HNTSLEVLN--FYMTEFAKI--SPKDLETIARNCRSLVSVKVGDFEIL----------ELVGFFKAAANLEEFCGGSLNE 255 (592)
T ss_dssp HCCCCCEEE--CTTCCCSSC--CHHHHHHHHHHCTTCCEEECSSCBGG----------GGHHHHHHCTTCCEEEECBCCC
T ss_pred cCCCccEEE--eeccCCCcc--CHHHHHHHHhhCCCCcEEeccCccHH----------HHHHHHhhhhHHHhhccccccc
Confidence 233 33332 111122111 12334445667889999998765411 1334455678899999886443
Q ss_pred cccccCcccccccccCCCcccceEecCCCCCCCCCcceeeccccCcCcccccCCCCcccccCCCccEEEEecCcCcccc-
Q 046764 757 TLRFENMQEREDWIPYSSSQEVEFYGNGCLIPFPSLETLRFENMQEREDWIPYSSSQEVEVFPNLRDLFLLRCSKLLGT- 835 (1113)
Q Consensus 757 ~~~l~~L~~L~~~Lpl~~l~~~~~~g~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~- 835 (1113)
....... ...+..+++|+.|.++++... . .+.....+++|++|++++|. +.+.
T Consensus 256 ~~~~~~~-------------------~~~l~~~~~L~~L~l~~~~~~-~-----l~~~~~~~~~L~~L~Ls~~~-l~~~~ 309 (592)
T 3ogk_B 256 DIGMPEK-------------------YMNLVFPRKLCRLGLSYMGPN-E-----MPILFPFAAQIRKLDLLYAL-LETED 309 (592)
T ss_dssp CTTCTTS-------------------SSCCCCCTTCCEEEETTCCTT-T-----GGGGGGGGGGCCEEEETTCC-CCHHH
T ss_pred ccchHHH-------------------HHHhhccccccccCccccchh-H-----HHHHHhhcCCCcEEecCCCc-CCHHH
Confidence 2100000 023455788888888764211 1 12244578899999999995 5432
Q ss_pred c---CCCCCCccEEEEeccc---CccccCCCCCcccEEEEec----------cCCCCcccCCCccccccccccCCCCCCc
Q 046764 836 L---PKHLPSLQKLVIQRCE---KLLVDLPSLPSLNELKLGG----------CKKGGLQKGQPIIGRRIHYGCADTSSSL 899 (1113)
Q Consensus 836 l---p~~l~~L~~L~L~~c~---~L~~~l~~l~~L~~L~L~~----------~~~~~~~~~~~l~~l~l~~~~~~~l~~L 899 (1113)
+ ...+++|++|++.++- .+......+++|++|++++ |.......
T Consensus 310 ~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~-------------------- 369 (592)
T 3ogk_B 310 HCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRG-------------------- 369 (592)
T ss_dssp HHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHH--------------------
T ss_pred HHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHH--------------------
Confidence 2 2578999999998542 1222223478899999984 43332110
Q ss_pred ccccccCCCCCcCcccCCCCCCceEEEcccCCCcccccccCCCCCcccCCCCccEEEeec---CCCCcccCCCC------
Q 046764 900 RVCLQCCNSLTNNARVQLPLSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHILS---CPSPTSIFSEN------ 970 (1113)
Q Consensus 900 ~~L~~~~N~L~~~~~l~~l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~---c~~L~~ll~~~------ 970 (1113)
.......+++|++|++ .|.+++.. . +..+...+++|++|++++ |+.++. .|..
T Consensus 370 -----------~~~l~~~~~~L~~L~l-~~~~l~~~-~----~~~l~~~~~~L~~L~l~~~~~~n~l~~-~p~~~~~~~~ 431 (592)
T 3ogk_B 370 -----------LIALAQGCQELEYMAV-YVSDITNE-S----LESIGTYLKNLCDFRLVLLDREERITD-LPLDNGVRSL 431 (592)
T ss_dssp -----------HHHHHHHCTTCSEEEE-EESCCCHH-H----HHHHHHHCCSCCEEEEEECSCCSCCSS-CCCHHHHHHH
T ss_pred -----------HHHHHhhCccCeEEEe-ecCCccHH-H----HHHHHhhCCCCcEEEEeecCCCccccC-chHHHHHHHH
Confidence 0011123456666666 33334332 0 011112356666666663 334443 2111
Q ss_pred --CcCCccCeEEEccccc-cccc---cccCCCCCCCeEEEEecCCCccc-----cCCCCCCccEEEEeecCCCCc--ccc
Q 046764 971 --ELPATLQRLEVNSCSK-LALL---TLSGNLPQGPKYLELTSCSKWES-----IADNNTSLQVITVFRCKNLKT--LPD 1037 (1113)
Q Consensus 971 --~l~~sL~~L~i~~c~~-L~~l---~l~~~lp~~L~~L~L~~c~~L~~-----lp~~l~sL~~L~Ls~c~~l~~--lP~ 1037 (1113)
++ ++|++|+++.|.+ +..- .+...+|. |+.|++++|. ++. +...+++|++|+|++|+ ++. ++.
T Consensus 432 ~~~~-~~L~~L~L~~~~~~l~~~~~~~~~~~~~~-L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~ 507 (592)
T 3ogk_B 432 LIGC-KKLRRFAFYLRQGGLTDLGLSYIGQYSPN-VRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAA 507 (592)
T ss_dssp HHHC-TTCCEEEEECCGGGCCHHHHHHHHHSCTT-CCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHH
T ss_pred HHhC-CCCCEEEEecCCCCccHHHHHHHHHhCcc-ceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHH
Confidence 11 2455555544432 1100 01112344 6777776653 321 22336777777777776 332 344
Q ss_pred cCCCCCCcCeeee-ccccc
Q 046764 1038 GLHKLNNLQAFTI-CKNLV 1055 (1113)
Q Consensus 1038 ~l~~L~sL~~L~L-cn~L~ 1055 (1113)
.+..+++|+.|++ .+++.
T Consensus 508 ~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 508 AVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp HHHHCSSCCEEEEESCBCC
T ss_pred HHHhcCccCeeECcCCcCC
Confidence 4456777777777 44444
No 46
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.68 E-value=3.8e-16 Score=177.14 Aligned_cols=60 Identities=15% Similarity=0.145 Sum_probs=47.8
Q ss_pred CccccEEecCCCCCcccChhhhccccccEEecccccccccccccccCCCcceEEEcCCcee
Q 046764 608 LKHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNFDFCC 668 (1113)
Q Consensus 608 L~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~~~~i 668 (1113)
..++++|+|++|.++.+|..++++++|++|+|++| .+..+|..++++++|++|++++|.+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~l 139 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNPL 139 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCCC
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCcc
Confidence 35677888888888888888888888888888874 5568888888888888888887744
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.65 E-value=2.9e-15 Score=170.11 Aligned_cols=269 Identities=16% Similarity=0.170 Sum_probs=145.2
Q ss_pred CccccEEecCCCCCcccChhhhccccccEEecccccccccccc-cccCCCcceEEEcCCceecccccccccccccccccc
Q 046764 608 LKHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCS-DMGNLLKLHHLDNFDFCCWKDIDSALQELKLLHLHG 686 (1113)
Q Consensus 608 L~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~-~i~~L~~L~~L~L~~~~i~~~~~~~l~~L~L~~L~g 686 (1113)
..+|++++++++.++.+|..+. ++|++|++++| .+..+|. .++++++|++|++++|.+....|..
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----------- 95 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGA----------- 95 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCC--TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT-----------
T ss_pred cCCCeEEEecCCCccccCccCC--CCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHH-----------
Confidence 3456666776666666665543 46667777664 4455543 5666677777776666443222222
Q ss_pred ceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCCCCCcceEEEeccCccccccCcccc
Q 046764 687 ALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGETLRFENMQER 766 (1113)
Q Consensus 687 ~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~L~~~~~~~~l~~L~~L 766 (1113)
+..+++|+.|+++.|.... ....+ .++|+.|+++++.... +
T Consensus 96 --------------------~~~l~~L~~L~Ls~n~l~~----------l~~~~--~~~L~~L~l~~n~l~~-------~ 136 (330)
T 1xku_A 96 --------------------FAPLVKLERLYLSKNQLKE----------LPEKM--PKTLQELRVHENEITK-------V 136 (330)
T ss_dssp --------------------TTTCTTCCEEECCSSCCSB----------CCSSC--CTTCCEEECCSSCCCB-------B
T ss_pred --------------------hcCCCCCCEEECCCCcCCc----------cChhh--cccccEEECCCCcccc-------c
Confidence 2333444444444433110 00011 1345555544432110 0
Q ss_pred cccccCCCcccceEecCCCCCCCCCcceeeccccCcCcccccCCCCcccccCCCccEEEEecCcCcccccCC-CCCCccE
Q 046764 767 EDWIPYSSSQEVEFYGNGCLIPFPSLETLRFENMQEREDWIPYSSSQEVEVFPNLRDLFLLRCSKLLGTLPK-HLPSLQK 845 (1113)
Q Consensus 767 ~~~Lpl~~l~~~~~~g~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~lp~-~l~~L~~ 845 (1113)
. ...+..+++|+.|+++++....... .+..+..+++|+.|++++| .+. .+|. ..++|++
T Consensus 137 ~---------------~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~~l~~L~~L~l~~n-~l~-~l~~~~~~~L~~ 196 (330)
T 1xku_A 137 R---------------KSVFNGLNQMIVVELGTNPLKSSGI---ENGAFQGMKKLSYIRIADT-NIT-TIPQGLPPSLTE 196 (330)
T ss_dssp C---------------HHHHTTCTTCCEEECCSSCCCGGGB---CTTGGGGCTTCCEEECCSS-CCC-SCCSSCCTTCSE
T ss_pred C---------------HhHhcCCccccEEECCCCcCCccCc---ChhhccCCCCcCEEECCCC-ccc-cCCccccccCCE
Confidence 0 0112345566666666543211001 1234456777777777777 455 4554 3367777
Q ss_pred EEEecccCc---cccCCCCCcccEEEEeccCCCCcccCCCccccccccccCCCCCCcccccccCCCCC-cCcccCCCCCC
Q 046764 846 LVIQRCEKL---LVDLPSLPSLNELKLGGCKKGGLQKGQPIIGRRIHYGCADTSSSLRVCLQCCNSLT-NNARVQLPLSL 921 (1113)
Q Consensus 846 L~L~~c~~L---~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~~l~~L~~L~~~~N~L~-~~~~l~~l~~L 921 (1113)
|++++|..- ...+..+++|++|++++|...... ...+..+++|+.|++.+|.+. .+..+..+++|
T Consensus 197 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----------~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L 265 (330)
T 1xku_A 197 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD-----------NGSLANTPHLRELHLNNNKLVKVPGGLADHKYI 265 (330)
T ss_dssp EECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC-----------TTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSC
T ss_pred EECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC-----------hhhccCCCCCCEEECCCCcCccCChhhccCCCc
Confidence 777776421 224556778888888887765532 245666777777777777777 55667778888
Q ss_pred ceEEEcccCCCcccccccCCCC-CcccCCCCccEEEeecCCC
Q 046764 922 KDLSIAFCDNLRTLVEEEGIPK-GSRKYSSHLECLHILSCPS 962 (1113)
Q Consensus 922 ~~L~Ls~c~~L~~l~~~~~lp~-~l~~~l~~L~~L~L~~c~~ 962 (1113)
+.|++++|. ++.+ +...+.. ......+.|+.|++++++.
T Consensus 266 ~~L~l~~N~-i~~~-~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 266 QVVYLHNNN-ISAI-GSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp CEEECCSSC-CCCC-CTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred CEEECCCCc-CCcc-ChhhcCCcccccccccccceEeecCcc
Confidence 888888775 6665 4333211 1111346777777776653
No 48
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.65 E-value=5.3e-15 Score=180.90 Aligned_cols=54 Identities=15% Similarity=0.193 Sum_probs=44.1
Q ss_pred ccccEEecCCCCCcccChhhhccccccEEecccccccccccccccCCCcceEEEcCCcee
Q 046764 609 KHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNFDFCC 668 (1113)
Q Consensus 609 ~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~~~~i 668 (1113)
.++++|++++|+++.+|..+. ++|++|+|++| .+..+|. .+++|++|++++|.+
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N~l 93 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQL 93 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSC-CCSCCCC---CCTTCCEEEECSCCC
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCC-CCCCCCC---cCCCCCEEEcCCCcC
Confidence 357889999999999988776 79999999985 6778887 578899999988743
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.65 E-value=4.7e-15 Score=168.40 Aligned_cols=286 Identities=15% Similarity=0.103 Sum_probs=146.6
Q ss_pred CeeEEccCCcC--CC--CCCccccEEecCCCCCcccCh-hhhccccccEEecccccccccc-cccccCCCcceEEEcCCc
Q 046764 593 NLQTFLPTTVS--HG--GDLKHLRHLDLSETDIQILPE-SVNTLYNLRMLMLQKCNQLEKM-CSDMGNLLKLHHLDNFDF 666 (1113)
Q Consensus 593 ~Lr~L~~~~~~--~i--~~L~~Lr~L~Ls~~~i~~LP~-~i~~L~~L~~LdL~~c~~l~~L-P~~i~~L~~L~~L~L~~~ 666 (1113)
++|.+.+.+.. .+ .-.++|++|+|++|+++.+|. .++++++|++|+|++|. +..+ |..++++++|++|++++|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc-CCeeCHHHhcCCCCCCEEECCCC
Confidence 45555554432 11 113578999999999988865 78999999999999864 4444 788899999999999988
Q ss_pred eecccccccc-ccccccccccceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCCCCC
Q 046764 667 CCWKDIDSAL-QELKLLHLHGALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKPHQN 745 (1113)
Q Consensus 667 ~i~~~~~~~l-~~L~L~~L~g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~ 745 (1113)
.+.. .|..+ .. |++|. +.-+.+. ......+.++++|+.|+++.|.... .......+..+++
T Consensus 111 ~l~~-l~~~~~~~--L~~L~--l~~n~l~------~~~~~~~~~l~~L~~L~l~~n~l~~-------~~~~~~~~~~l~~ 172 (330)
T 1xku_A 111 QLKE-LPEKMPKT--LQELR--VHENEIT------KVRKSVFNGLNQMIVVELGTNPLKS-------SGIENGAFQGMKK 172 (330)
T ss_dssp CCSB-CCSSCCTT--CCEEE--CCSSCCC------BBCHHHHTTCTTCCEEECCSSCCCG-------GGBCTTGGGGCTT
T ss_pred cCCc-cChhhccc--ccEEE--CCCCccc------ccCHhHhcCCccccEEECCCCcCCc-------cCcChhhccCCCC
Confidence 6642 23222 11 22222 1111111 1122346667777777776664211 0011233445566
Q ss_pred cceEEEeccCccccccCcccccccccCCCcccceEecCCCCCCCCCcceeeccccCcCcccccCCCCcccccCCCccEEE
Q 046764 746 LERFCISGYGETLRFENMQEREDWIPYSSSQEVEFYGNGCLIPFPSLETLRFENMQEREDWIPYSSSQEVEVFPNLRDLF 825 (1113)
Q Consensus 746 L~~L~L~~~~~~~~l~~L~~L~~~Lpl~~l~~~~~~g~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~ 825 (1113)
|+.|+++++.... + | . ..+++|+.|+++++. +.... +..+..+++|+.|+
T Consensus 173 L~~L~l~~n~l~~-------l----~------------~--~~~~~L~~L~l~~n~-l~~~~----~~~~~~l~~L~~L~ 222 (330)
T 1xku_A 173 LSYIRIADTNITT-------I----P------------Q--GLPPSLTELHLDGNK-ITKVD----AASLKGLNNLAKLG 222 (330)
T ss_dssp CCEEECCSSCCCS-------C----C------------S--SCCTTCSEEECTTSC-CCEEC----TGGGTTCTTCCEEE
T ss_pred cCEEECCCCcccc-------C----C------------c--cccccCCEEECCCCc-CCccC----HHHhcCCCCCCEEE
Confidence 6666666543111 0 0 0 112566666666543 22211 22344566666666
Q ss_pred EecCcCcccccCC---CCCCccEEEEeccc--CccccCCCCCcccEEEEeccCCCCcccCCCccccccccccCCCCCCcc
Q 046764 826 LLRCSKLLGTLPK---HLPSLQKLVIQRCE--KLLVDLPSLPSLNELKLGGCKKGGLQKGQPIIGRRIHYGCADTSSSLR 900 (1113)
Q Consensus 826 L~~c~~L~~~lp~---~l~~L~~L~L~~c~--~L~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~~l~~L~ 900 (1113)
+++| .+.+..+. .+++|++|++++|. .++..+..+++|++|++++|......+ ..+.
T Consensus 223 Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~-----------~~f~------ 284 (330)
T 1xku_A 223 LSFN-SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGS-----------NDFC------ 284 (330)
T ss_dssp CCSS-CCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCT-----------TSSS------
T ss_pred CCCC-cCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccCh-----------hhcC------
Confidence 6666 44422221 34455555555552 222233334555555555554433211 0000
Q ss_pred cccccCCCCCcCcccCCCCCCceEEEcccCCCcccccccCCCCCcccCCCCccEEEeecC
Q 046764 901 VCLQCCNSLTNNARVQLPLSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHILSC 960 (1113)
Q Consensus 901 ~L~~~~N~L~~~~~l~~l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~c 960 (1113)
........++|+.|++++++ +... ...|..+ ..+.+|+.++++++
T Consensus 285 ----------~~~~~~~~~~l~~l~l~~N~-~~~~---~i~~~~f-~~~~~l~~l~L~~N 329 (330)
T 1xku_A 285 ----------PPGYNTKKASYSGVSLFSNP-VQYW---EIQPSTF-RCVYVRAAVQLGNY 329 (330)
T ss_dssp ----------CSSCCTTSCCCSEEECCSSS-SCGG---GSCGGGG-TTCCCGGGEEC---
T ss_pred ----------CcccccccccccceEeecCc-cccc---ccCcccc-ccccceeEEEeccc
Confidence 00011124678888888876 3221 1122223 36778888887765
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.64 E-value=2.9e-16 Score=176.91 Aligned_cols=62 Identities=23% Similarity=0.248 Sum_probs=53.0
Q ss_pred ccccEEecCCCCCc---ccChhhhccccccEEeccc-ccccccccccccCCCcceEEEcCCceecc
Q 046764 609 KHLRHLDLSETDIQ---ILPESVNTLYNLRMLMLQK-CNQLEKMCSDMGNLLKLHHLDNFDFCCWK 670 (1113)
Q Consensus 609 ~~Lr~L~Ls~~~i~---~LP~~i~~L~~L~~LdL~~-c~~l~~LP~~i~~L~~L~~L~L~~~~i~~ 670 (1113)
.+++.|+|++|.+. .+|..++++++|++|++++ +.....+|..++++++|++|++++|.+..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 115 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG 115 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC
Confidence 57899999999998 5899999999999999995 55555889999999999999999886543
No 51
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.64 E-value=3.6e-15 Score=169.53 Aligned_cols=266 Identities=16% Similarity=0.162 Sum_probs=134.5
Q ss_pred ccccEEecCCCCCcccChhhhccccccEEecccccccccc-cccccCCCcceEEEcCCceeccccccccccccccccccc
Q 046764 609 KHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKM-CSDMGNLLKLHHLDNFDFCCWKDIDSALQELKLLHLHGA 687 (1113)
Q Consensus 609 ~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~L-P~~i~~L~~L~~L~L~~~~i~~~~~~~l~~L~L~~L~g~ 687 (1113)
.+|++++++++.++.+|..+. ++|++|++++| .+..+ |..++++++|++|++++|.+....+.
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------- 96 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEK------------- 96 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGG-------------
T ss_pred ccCCEEECCCCCccccCCCCC--CCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHh-------------
Confidence 467777777777777776664 57777777774 45555 34677777777777777644322222
Q ss_pred eeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCCCCCcceEEEeccCccccccCccccc
Q 046764 688 LEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGETLRFENMQERE 767 (1113)
Q Consensus 688 L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~L~~~~~~~~l~~L~~L~ 767 (1113)
.+.++++|+.|++++|.... ....+ .++|+.|+++++.... +
T Consensus 97 ------------------~~~~l~~L~~L~L~~n~l~~----------l~~~~--~~~L~~L~l~~n~i~~-------~- 138 (332)
T 2ft3_A 97 ------------------AFSPLRKLQKLYISKNHLVE----------IPPNL--PSSLVELRIHDNRIRK-------V- 138 (332)
T ss_dssp ------------------GSTTCTTCCEEECCSSCCCS----------CCSSC--CTTCCEEECCSSCCCC-------C-
T ss_pred ------------------HhhCcCCCCEEECCCCcCCc----------cCccc--cccCCEEECCCCccCc-------c-
Confidence 23444555555555443110 01111 1455555555432110 0
Q ss_pred ccccCCCcccceEecCCCCCCCCCcceeeccccCcCcccccCCCCcccccCCCccEEEEecCcCcccccCC-CCCCccEE
Q 046764 768 DWIPYSSSQEVEFYGNGCLIPFPSLETLRFENMQEREDWIPYSSSQEVEVFPNLRDLFLLRCSKLLGTLPK-HLPSLQKL 846 (1113)
Q Consensus 768 ~~Lpl~~l~~~~~~g~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~lp~-~l~~L~~L 846 (1113)
| ...+..+++|+.|+++++.--.... .+..+..+ +|+.|++++| .+. .+|. ..++|++|
T Consensus 139 ---~-----------~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~~l-~L~~L~l~~n-~l~-~l~~~~~~~L~~L 198 (332)
T 2ft3_A 139 ---P-----------KGVFSGLRNMNCIEMGGNPLENSGF---EPGAFDGL-KLNYLRISEA-KLT-GIPKDLPETLNEL 198 (332)
T ss_dssp ---C-----------SGGGSSCSSCCEEECCSCCCBGGGS---CTTSSCSC-CCSCCBCCSS-BCS-SCCSSSCSSCSCC
T ss_pred ---C-----------HhHhCCCccCCEEECCCCccccCCC---CcccccCC-ccCEEECcCC-CCC-ccCccccCCCCEE
Confidence 0 0123345566666665543211000 11222333 6666666666 454 3443 22456666
Q ss_pred EEecccCc--c-ccCCCCCcccEEEEeccCCCCcccCCCccccccccccCCCCCCcccccccCCCCC-cCcccCCCCCCc
Q 046764 847 VIQRCEKL--L-VDLPSLPSLNELKLGGCKKGGLQKGQPIIGRRIHYGCADTSSSLRVCLQCCNSLT-NNARVQLPLSLK 922 (1113)
Q Consensus 847 ~L~~c~~L--~-~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~~l~~L~~L~~~~N~L~-~~~~l~~l~~L~ 922 (1113)
++++|..- . ..+..+++|+.|++++|...... ...+..+++|+.|++.+|.+. .+..+..+++|+
T Consensus 199 ~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~-----------~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~ 267 (332)
T 2ft3_A 199 HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE-----------NGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQ 267 (332)
T ss_dssp BCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC-----------TTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCC
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC-----------hhHhhCCCCCCEEECCCCcCeecChhhhcCccCC
Confidence 66555211 1 23444666666666666555422 234455566666666665665 444456666666
Q ss_pred eEEEcccCCCcccccccCCCC-CcccCCCCccEEEeecCC
Q 046764 923 DLSIAFCDNLRTLVEEEGIPK-GSRKYSSHLECLHILSCP 961 (1113)
Q Consensus 923 ~L~Ls~c~~L~~l~~~~~lp~-~l~~~l~~L~~L~L~~c~ 961 (1113)
.|++++|. ++.+ +...+.. .+....++|+.|++.+++
T Consensus 268 ~L~l~~N~-l~~~-~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 268 VVYLHTNN-ITKV-GVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp EEECCSSC-CCBC-CTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred EEECCCCC-CCcc-ChhHccccccccccccccceEeecCc
Confidence 66666654 5544 3322211 111124556666666554
No 52
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.63 E-value=8.3e-18 Score=207.24 Aligned_cols=384 Identities=17% Similarity=0.158 Sum_probs=195.9
Q ss_pred CCccccEEecCCCCCcc-cChhhh-ccccccEEeccccccccc--ccccccCCCcceEEEcCCceecccccccccccc--
Q 046764 607 DLKHLRHLDLSETDIQI-LPESVN-TLYNLRMLMLQKCNQLEK--MCSDMGNLLKLHHLDNFDFCCWKDIDSALQELK-- 680 (1113)
Q Consensus 607 ~L~~Lr~L~Ls~~~i~~-LP~~i~-~L~~L~~LdL~~c~~l~~--LP~~i~~L~~L~~L~L~~~~i~~~~~~~l~~L~-- 680 (1113)
.+++|++|+|++|.++. .+..+. .+++|++|+|++|..+.. ++.-+.++++|++|++++|.+....+..+..+.
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 57799999999998774 355665 789999999999866554 555556899999999999976554444444332
Q ss_pred ccccccceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCCCCCcceEEEeccCccccc
Q 046764 681 LLHLHGALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGETLRF 760 (1113)
Q Consensus 681 L~~L~g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~L~~~~~~~~l 760 (1113)
+..|. .+.+..... ..........+..+++|+.|+++.|.. .......+..+++|+.|.+.++......
T Consensus 183 ~~~L~-~L~l~~~~~-~~~~~~l~~l~~~~~~L~~L~L~~~~~---------~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 251 (594)
T 2p1m_B 183 YTSLV-SLNISCLAS-EVSFSALERLVTRCPNLKSLKLNRAVP---------LEKLATLLQRAPQLEELGTGGYTAEVRP 251 (594)
T ss_dssp CCCCC-EEECTTCCS-CCCHHHHHHHHHHCTTCCEEECCTTSC---------HHHHHHHHHHCTTCSEEECSBCCCCCCH
T ss_pred CCcCc-EEEecccCC-cCCHHHHHHHHHhCCCCcEEecCCCCc---------HHHHHHHHhcCCcceEcccccccCccch
Confidence 22333 333333220 001122222334567888888865520 1113344455677888877665321100
Q ss_pred cCcccccccccCCCcccceEecCCCCCCCCCccee-eccccCcCcccccCCCCcccccCCCccEEEEecCcCcccc----
Q 046764 761 ENMQEREDWIPYSSSQEVEFYGNGCLIPFPSLETL-RFENMQEREDWIPYSSSQEVEVFPNLRDLFLLRCSKLLGT---- 835 (1113)
Q Consensus 761 ~~L~~L~~~Lpl~~l~~~~~~g~~~l~~~~~L~~L-~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~---- 835 (1113)
..+..+. ..+..+++|+.| .+.+... .. .+.....+++|++|++++|. +.+.
T Consensus 252 ~~~~~l~----------------~~l~~~~~L~~Ls~~~~~~~-~~-----l~~~~~~~~~L~~L~L~~~~-l~~~~l~~ 308 (594)
T 2p1m_B 252 DVYSGLS----------------VALSGCKELRCLSGFWDAVP-AY-----LPAVYSVCSRLTTLNLSYAT-VQSYDLVK 308 (594)
T ss_dssp HHHHHHH----------------HHHHTCTTCCEEECCBTCCG-GG-----GGGGHHHHTTCCEEECTTCC-CCHHHHHH
T ss_pred hhHHHHH----------------HHHhcCCCcccccCCcccch-hh-----HHHHHHhhCCCCEEEccCCC-CCHHHHHH
Confidence 0011110 122345666666 2322211 00 11122357889999999885 5431
Q ss_pred cCCCCCCccEEEEecccC---ccccCCCCCcccEEEEeccCCCCcccCCCccccccccccCCCCCCcccccccCCCCC--
Q 046764 836 LPKHLPSLQKLVIQRCEK---LLVDLPSLPSLNELKLGGCKKGGLQKGQPIIGRRIHYGCADTSSSLRVCLQCCNSLT-- 910 (1113)
Q Consensus 836 lp~~l~~L~~L~L~~c~~---L~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~~l~~L~~L~~~~N~L~-- 910 (1113)
+...+++|++|++.+|-. +......+++|++|++++|...+......+....+ ......+++|+.|...+|.++
T Consensus 309 ~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l-~~l~~~~~~L~~L~~~~~~l~~~ 387 (594)
T 2p1m_B 309 LLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL-VSVSMGCPKLESVLYFCRQMTNA 387 (594)
T ss_dssp HHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHH-HHHHHHCTTCCEEEEEESCCCHH
T ss_pred HHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHH-HHHHHhchhHHHHHHhcCCcCHH
Confidence 123678899999988821 11112247889999996653110000000000000 001123566666644444555
Q ss_pred cCccc-CCCCCCceEEEc-----ccCCCcccccc-cCCCCCcccCCCCccEEEeecCCCCccc-CCC-CCcCCccCeEEE
Q 046764 911 NNARV-QLPLSLKDLSIA-----FCDNLRTLVEE-EGIPKGSRKYSSHLECLHILSCPSPTSI-FSE-NELPATLQRLEV 981 (1113)
Q Consensus 911 ~~~~l-~~l~~L~~L~Ls-----~c~~L~~l~~~-~~lp~~l~~~l~~L~~L~L~~c~~L~~l-l~~-~~l~~sL~~L~i 981 (1113)
....+ ..+++|+.|+++ +|..++.. +. ..++..+ ..+++|++|++++ .++.. ++. ....++|+.|++
T Consensus 388 ~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~-~~~~~~~~l~-~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L 463 (594)
T 2p1m_B 388 ALITIARNRPNMTRFRLCIIEPKAPDYLTLE-PLDIGFGAIV-EHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSV 463 (594)
T ss_dssp HHHHHHHHCTTCCEEEEEESSTTCCCTTTCC-CTHHHHHHHH-HHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHHHhhCCCcceeEeecccCCCcccccCC-chhhHHHHHH-hhCCCccEEeecC--cccHHHHHHHHHhchhccEeec
Confidence 12222 246777777777 45555533 11 1111111 2566777777754 22220 000 011235666666
Q ss_pred ccccccccc---cccCCCCCCCeEEEEecCCCccc----cCCCCCCccEEEEeecCC
Q 046764 982 NSCSKLALL---TLSGNLPQGPKYLELTSCSKWES----IADNNTSLQVITVFRCKN 1031 (1113)
Q Consensus 982 ~~c~~L~~l---~l~~~lp~~L~~L~L~~c~~L~~----lp~~l~sL~~L~Ls~c~~ 1031 (1113)
++|. +... .+...+++ |+.|++++|+.-.. +...+++|+.|++++|+.
T Consensus 464 ~~~~-i~~~~~~~l~~~~~~-L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 464 AFAG-DSDLGMHHVLSGCDS-LRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp ESCC-SSHHHHHHHHHHCTT-CCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred cCCC-CcHHHHHHHHhcCCC-cCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 6654 2111 01112444 66666666653111 111156666666666654
No 53
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.61 E-value=7.3e-17 Score=198.73 Aligned_cols=340 Identities=12% Similarity=0.023 Sum_probs=203.0
Q ss_pred cCCCcccceEEeeecCCCCCCCCchhhHhhhccCCCCCCcceEEEeccCccc-cccCcccccccccCCCcccceEecCCC
Q 046764 707 LNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGETL-RFENMQEREDWIPYSSSQEVEFYGNGC 785 (1113)
Q Consensus 707 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~L~~~~~~~-~l~~L~~L~~~Lpl~~l~~~~~~g~~~ 785 (1113)
...+++|+.|++++|...+... . .....+..+++|+.|+++++.... ....+. ..
T Consensus 160 ~~~~~~L~~L~L~~~~~~~~~~--~---~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~-------------------~~ 215 (592)
T 3ogk_B 160 VTHCRKIKTLLMEESSFSEKDG--K---WLHELAQHNTSLEVLNFYMTEFAKISPKDLE-------------------TI 215 (592)
T ss_dssp HHHCTTCSEEECTTCEEECCCS--H---HHHHHHHHCCCCCEEECTTCCCSSCCHHHHH-------------------HH
T ss_pred HhhCCCCCEEECccccccCcch--h---HHHHHHhcCCCccEEEeeccCCCccCHHHHH-------------------HH
Confidence 3456788888887775221100 0 011122346788888887654320 000000 11
Q ss_pred CCCCCCcceeeccccCcCcccccCCCCcccccCCCccEEEEecCcCccc--ccC---CCCCCccEEEEeccc--CccccC
Q 046764 786 LIPFPSLETLRFENMQEREDWIPYSSSQEVEVFPNLRDLFLLRCSKLLG--TLP---KHLPSLQKLVIQRCE--KLLVDL 858 (1113)
Q Consensus 786 l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~--~lp---~~l~~L~~L~L~~c~--~L~~~l 858 (1113)
+..+++|+.|++.++... .+ +.....+++|+.|.++.+..... ..+ ..+++|+.|.++++. .++..+
T Consensus 216 ~~~~~~L~~L~L~~~~~~-~l-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~ 289 (592)
T 3ogk_B 216 ARNCRSLVSVKVGDFEIL-EL-----VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILF 289 (592)
T ss_dssp HHHCTTCCEEECSSCBGG-GG-----HHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGG
T ss_pred HhhCCCCcEEeccCccHH-HH-----HHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHH
Confidence 234789999999986422 22 22456789999999986532210 111 256789999998763 444455
Q ss_pred CCCCcccEEEEeccCCCCcccCCCccccccccccCCCCCCcccccccCCCCC---cCcccCCCCCCceEEEcc-------
Q 046764 859 PSLPSLNELKLGGCKKGGLQKGQPIIGRRIHYGCADTSSSLRVCLQCCNSLT---NNARVQLPLSLKDLSIAF------- 928 (1113)
Q Consensus 859 ~~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~~l~~L~~L~~~~N~L~---~~~~l~~l~~L~~L~Ls~------- 928 (1113)
..+++|++|++++|...... ....+..+++|+.|.+.. .+. .......+++|++|++++
T Consensus 290 ~~~~~L~~L~Ls~~~l~~~~----------~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~ 358 (592)
T 3ogk_B 290 PFAAQIRKLDLLYALLETED----------HCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQLKRLRIERGADEQGM 358 (592)
T ss_dssp GGGGGCCEEEETTCCCCHHH----------HHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTTCCEEEEECCCCSSTT
T ss_pred hhcCCCcEEecCCCcCCHHH----------HHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCCCCEEEeecCcccccc
Confidence 66889999999999843211 012357788999996663 444 223335678999999995
Q ss_pred ---cCCCcccccccCCCCCcccCCCCccEEEeecCCCCcccCCC---CCcCCccCeEEEcc---cccccccc-------c
Q 046764 929 ---CDNLRTLVEEEGIPKGSRKYSSHLECLHILSCPSPTSIFSE---NELPATLQRLEVNS---CSKLALLT-------L 992 (1113)
Q Consensus 929 ---c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~c~~L~~ll~~---~~l~~sL~~L~i~~---c~~L~~l~-------l 992 (1113)
|..++.. . ++. +...+++|++|++ +|..++. ... ....++|+.|++.+ |..++... +
T Consensus 359 ~~~~~~~~~~-~---~~~-l~~~~~~L~~L~l-~~~~l~~-~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~ 431 (592)
T 3ogk_B 359 EDEEGLVSQR-G---LIA-LAQGCQELEYMAV-YVSDITN-ESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSL 431 (592)
T ss_dssp SSTTCCCCHH-H---HHH-HHHHCTTCSEEEE-EESCCCH-HHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHH
T ss_pred ccccCccCHH-H---HHH-HHhhCccCeEEEe-ecCCccH-HHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHH
Confidence 7665542 1 111 1135889999999 5555543 111 11123799999974 45555321 1
Q ss_pred cCCCCCCCeEEEEecCCC-cc-----ccCCCCCCccEEEEeecCCCC-cccccCCCCCCcCeeee-cccccc--ccCCCC
Q 046764 993 SGNLPQGPKYLELTSCSK-WE-----SIADNNTSLQVITVFRCKNLK-TLPDGLHKLNNLQAFTI-CKNLVS--FPKGGL 1062 (1113)
Q Consensus 993 ~~~lp~~L~~L~L~~c~~-L~-----~lp~~l~sL~~L~Ls~c~~l~-~lP~~l~~L~sL~~L~L-cn~L~s--lp~~~~ 1062 (1113)
..+++. |+.|+++.|.. +. .+...+++|+.|+|++|.... .++..+..+++|++|+| .+.+.. ++....
T Consensus 432 ~~~~~~-L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 510 (592)
T 3ogk_B 432 LIGCKK-LRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVT 510 (592)
T ss_dssp HHHCTT-CCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHH
T ss_pred HHhCCC-CCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHH
Confidence 123566 99999987753 22 122237899999999876322 34666788999999999 444542 232222
Q ss_pred CCCCcCcEEEeCCCCCccCCCCCCCCCcCccccc
Q 046764 1063 PSTQLRDPDITGCQKLEALPDGDLSSTFKTGKSS 1096 (1113)
Q Consensus 1063 ~~~sL~~L~l~~C~~L~~l~~~~l~~sL~~L~~~ 1096 (1113)
.+++|+.|++++|+ ++......+...++.+++.
T Consensus 511 ~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~ 543 (592)
T 3ogk_B 511 KLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIE 543 (592)
T ss_dssp HCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEE
T ss_pred hcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEE
Confidence 45689999999998 5544333344445555443
No 54
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.60 E-value=1.1e-14 Score=165.38 Aligned_cols=76 Identities=21% Similarity=0.161 Sum_probs=55.4
Q ss_pred CeeEEccCCcC--CC--CCCccccEEecCCCCCccc-ChhhhccccccEEecccccccccc-cccccCCCcceEEEcCCc
Q 046764 593 NLQTFLPTTVS--HG--GDLKHLRHLDLSETDIQIL-PESVNTLYNLRMLMLQKCNQLEKM-CSDMGNLLKLHHLDNFDF 666 (1113)
Q Consensus 593 ~Lr~L~~~~~~--~i--~~L~~Lr~L~Ls~~~i~~L-P~~i~~L~~L~~LdL~~c~~l~~L-P~~i~~L~~L~~L~L~~~ 666 (1113)
+++.+.+.+.. .+ .-.++|++|+|++|.+..+ |..++++++|++|++++|. +..+ |..++++++|++|++++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEECCSS
T ss_pred cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEECCCC
Confidence 45555554433 11 1135789999999998887 4578999999999999864 4544 778889999999999888
Q ss_pred eec
Q 046764 667 CCW 669 (1113)
Q Consensus 667 ~i~ 669 (1113)
.+.
T Consensus 113 ~l~ 115 (332)
T 2ft3_A 113 HLV 115 (332)
T ss_dssp CCC
T ss_pred cCC
Confidence 664
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.58 E-value=6.9e-14 Score=171.03 Aligned_cols=236 Identities=22% Similarity=0.193 Sum_probs=178.0
Q ss_pred CCcceeeccccCcCcccccCCCCcccccCCCccEEEEecCcCcccccCCCCCCccEEEEecccCccccCCCCCcccEEEE
Q 046764 790 PSLETLRFENMQEREDWIPYSSSQEVEVFPNLRDLFLLRCSKLLGTLPKHLPSLQKLVIQRCEKLLVDLPSLPSLNELKL 869 (1113)
Q Consensus 790 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~lp~~l~~L~~L~L~~c~~L~~~l~~l~~L~~L~L 869 (1113)
++|+.|+++++. +..+. ..+++|++|++++| +++ .+|..+++|++|++++|..-. ....+++|+.|++
T Consensus 61 ~~L~~L~L~~N~-l~~lp--------~~l~~L~~L~Ls~N-~l~-~lp~~l~~L~~L~Ls~N~l~~-l~~~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNN-LTSLP--------ALPPELRTLEVSGN-QLT-SLPVLPPGLLELSIFSNPLTH-LPALPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCC-CSCCC--------CCCTTCCEEEECSC-CCS-CCCCCCTTCCEEEECSCCCCC-CCCCCTTCCEEEC
T ss_pred CCCcEEEecCCC-CCCCC--------CcCCCCCEEEcCCC-cCC-cCCCCCCCCCEEECcCCcCCC-CCCCCCCcCEEEC
Confidence 789999999873 33332 15789999999999 677 788889999999999884221 1225789999999
Q ss_pred eccCCCCcccCCCccccccccccCCCCCCcccccccCCCCCcCcccCCCCCCceEEEcccCCCcccccccCCCCCcccCC
Q 046764 870 GGCKKGGLQKGQPIIGRRIHYGCADTSSSLRVCLQCCNSLTNNARVQLPLSLKDLSIAFCDNLRTLVEEEGIPKGSRKYS 949 (1113)
Q Consensus 870 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~L~~L~~~~N~L~~~~~l~~l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l 949 (1113)
++|...... ..+++|++|++.+|.++.... .+++|+.|++++|. ++.+ | ..+
T Consensus 129 ~~N~l~~lp---------------~~l~~L~~L~Ls~N~l~~l~~--~~~~L~~L~L~~N~-l~~l-~---------~~~ 180 (622)
T 3g06_A 129 FGNQLTSLP---------------VLPPGLQELSVSDNQLASLPA--LPSELCKLWAYNNQ-LTSL-P---------MLP 180 (622)
T ss_dssp CSSCCSCCC---------------CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSC-CSCC-C---------CCC
T ss_pred CCCCCCcCC---------------CCCCCCCEEECcCCcCCCcCC--ccCCCCEEECCCCC-CCCC-c---------ccC
Confidence 999876532 124889999888888883222 46789999999876 6555 3 156
Q ss_pred CCccEEEeecCCCCcccCCCCCcCCccCeEEEccccccccccccCCCCCCCeEEEEecCCCccccCCCCCCccEEEEeec
Q 046764 950 SHLECLHILSCPSPTSIFSENELPATLQRLEVNSCSKLALLTLSGNLPQGPKYLELTSCSKWESIADNNTSLQVITVFRC 1029 (1113)
Q Consensus 950 ~~L~~L~L~~c~~L~~ll~~~~l~~sL~~L~i~~c~~L~~l~l~~~lp~~L~~L~L~~c~~L~~lp~~l~sL~~L~Ls~c 1029 (1113)
++|+.|++++|. ++. ++. .+++|+.|++.++. ++.++ ..+..|+.|++++| .++.+|..+++|+.|++++|
T Consensus 181 ~~L~~L~Ls~N~-l~~-l~~--~~~~L~~L~L~~N~-l~~l~---~~~~~L~~L~Ls~N-~L~~lp~~l~~L~~L~Ls~N 251 (622)
T 3g06_A 181 SGLQELSVSDNQ-LAS-LPT--LPSELYKLWAYNNR-LTSLP---ALPSGLKELIVSGN-RLTSLPVLPSELKELMVSGN 251 (622)
T ss_dssp TTCCEEECCSSC-CSC-CCC--CCTTCCEEECCSSC-CSSCC---CCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS
T ss_pred CCCcEEECCCCC-CCC-CCC--ccchhhEEECcCCc-ccccC---CCCCCCCEEEccCC-ccCcCCCCCCcCcEEECCCC
Confidence 889999998864 444 332 34689999988863 44332 22334999999986 78888866999999999997
Q ss_pred CCCCcccccCCCCCCcCeeee-ccccccccCCCCCCCCcCcEEEeCCCCC
Q 046764 1030 KNLKTLPDGLHKLNNLQAFTI-CKNLVSFPKGGLPSTQLRDPDITGCQKL 1078 (1113)
Q Consensus 1030 ~~l~~lP~~l~~L~sL~~L~L-cn~L~slp~~~~~~~sL~~L~l~~C~~L 1078 (1113)
.++.+|. .+++|+.|++ .|++..+|.....+++|+.|++++|+--
T Consensus 252 -~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 252 -RLTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp -CCSCCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred -CCCcCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCC
Confidence 6778887 6789999999 8899999887777789999999987643
No 56
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.57 E-value=1.2e-14 Score=164.72 Aligned_cols=57 Identities=23% Similarity=0.265 Sum_probs=34.7
Q ss_pred cCCCccEEEEecCcCcccccCC---CCCCccEEEEeccc--CccccCCCCCcccEEEEeccCCC
Q 046764 817 VFPNLRDLFLLRCSKLLGTLPK---HLPSLQKLVIQRCE--KLLVDLPSLPSLNELKLGGCKKG 875 (1113)
Q Consensus 817 ~~~~L~~L~L~~c~~L~~~lp~---~l~~L~~L~L~~c~--~L~~~l~~l~~L~~L~L~~~~~~ 875 (1113)
.+++++.|+++++ .+. .+|. .+++|++|++++|. .++..+..+++|++|++++|...
T Consensus 79 ~~~~l~~L~L~~n-~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~ 140 (328)
T 4fcg_A 79 TQPGRVALELRSV-PLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR 140 (328)
T ss_dssp TSTTCCEEEEESS-CCS-SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC
T ss_pred cccceeEEEccCC-Cch-hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc
Confidence 3577888888887 566 5664 35566666666663 22223444666666666666544
No 57
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.57 E-value=3e-17 Score=195.63 Aligned_cols=61 Identities=16% Similarity=0.150 Sum_probs=46.3
Q ss_pred CccccEEecCCCCCcccC--hhhhccccccEEecccccccc-----cccccccCCCcceEEEcCCceec
Q 046764 608 LKHLRHLDLSETDIQILP--ESVNTLYNLRMLMLQKCNQLE-----KMCSDMGNLLKLHHLDNFDFCCW 669 (1113)
Q Consensus 608 L~~Lr~L~Ls~~~i~~LP--~~i~~L~~L~~LdL~~c~~l~-----~LP~~i~~L~~L~~L~L~~~~i~ 669 (1113)
.++|++|+|++++++..+ ..+..+++|++|++++|. +. .+|..+..+++|++|++++|.+.
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 69 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELG 69 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCH
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCcCC
Confidence 357888899888887553 337888899999998864 33 56777788888999998887553
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.56 E-value=6.7e-14 Score=165.57 Aligned_cols=133 Identities=24% Similarity=0.302 Sum_probs=75.4
Q ss_pred CCCCCCcceeeccccCcCcccccCCCCcccccCCCccEEEEecCcCcccccCCCCCCccEEEEecccCccccCCCCCccc
Q 046764 786 LIPFPSLETLRFENMQEREDWIPYSSSQEVEVFPNLRDLFLLRCSKLLGTLPKHLPSLQKLVIQRCEKLLVDLPSLPSLN 865 (1113)
Q Consensus 786 l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~lp~~l~~L~~L~L~~c~~L~~~l~~l~~L~ 865 (1113)
+..+++|+.|+++++..+.... ...+..+++|+.|++++| +++ .+|. +..+++|+
T Consensus 156 ~~~l~~L~~L~l~~~~~l~~i~----~~~~~~l~~L~~L~L~~n-~l~-~~~~-------------------~~~l~~L~ 210 (440)
T 3zyj_A 156 FNRIPSLRRLDLGELKRLSYIS----EGAFEGLSNLRYLNLAMC-NLR-EIPN-------------------LTPLIKLD 210 (440)
T ss_dssp TTTCTTCCEEECCCCTTCCEEC----TTTTTTCSSCCEEECTTS-CCS-SCCC-------------------CTTCSSCC
T ss_pred hhhCcccCEeCCCCCCCcceeC----cchhhcccccCeecCCCC-cCc-cccc-------------------cCCCcccC
Confidence 3445666666666655444433 223456677777777776 454 3332 33455566
Q ss_pred EEEEeccCCCCcccCCCccccccccccCCCCCCcccccccCCCCC--cCcccCCCCCCceEEEcccCCCcccccccCCCC
Q 046764 866 ELKLGGCKKGGLQKGQPIIGRRIHYGCADTSSSLRVCLQCCNSLT--NNARVQLPLSLKDLSIAFCDNLRTLVEEEGIPK 943 (1113)
Q Consensus 866 ~L~L~~~~~~~~~~~~~l~~l~l~~~~~~~l~~L~~L~~~~N~L~--~~~~l~~l~~L~~L~Ls~c~~L~~l~~~~~lp~ 943 (1113)
+|++++|...... ...+..+++|+.|.+.+|.+. .+..+..+++|+.|+|++|. ++.+ +...
T Consensus 211 ~L~Ls~N~l~~~~-----------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~-~~~~--- 274 (440)
T 3zyj_A 211 ELDLSGNHLSAIR-----------PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN-LTLL-PHDL--- 274 (440)
T ss_dssp EEECTTSCCCEEC-----------TTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC-CCCC-CTTT---
T ss_pred EEECCCCccCccC-----------hhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC-CCcc-ChhH---
Confidence 6666666544422 245555666666666665665 44556677777777777764 5444 2221
Q ss_pred CcccCCCCccEEEeecCC
Q 046764 944 GSRKYSSHLECLHILSCP 961 (1113)
Q Consensus 944 ~l~~~l~~L~~L~L~~c~ 961 (1113)
+ ..+++|+.|++++++
T Consensus 275 -~-~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 275 -F-TPLHHLERIHLHHNP 290 (440)
T ss_dssp -T-SSCTTCCEEECCSSC
T ss_pred -h-ccccCCCEEEcCCCC
Confidence 2 356777777776543
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.56 E-value=3.8e-14 Score=168.29 Aligned_cols=58 Identities=26% Similarity=0.438 Sum_probs=36.8
Q ss_pred ccccEEecCCCCCccc-ChhhhccccccEEeccccccccccc-ccccCCCcceEEEcCCce
Q 046764 609 KHLRHLDLSETDIQIL-PESVNTLYNLRMLMLQKCNQLEKMC-SDMGNLLKLHHLDNFDFC 667 (1113)
Q Consensus 609 ~~Lr~L~Ls~~~i~~L-P~~i~~L~~L~~LdL~~c~~l~~LP-~~i~~L~~L~~L~L~~~~ 667 (1113)
.+|++|+|++|+|+.+ |..|+++++|++|+|++| .+..++ ..+.++++|++|++++|.
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCc
Confidence 4667777777776665 456677777777777764 334333 556667777777766653
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.55 E-value=5.6e-14 Score=166.87 Aligned_cols=213 Identities=20% Similarity=0.166 Sum_probs=110.0
Q ss_pred CCccEEEEecCcCcccccCC---CCCCccEEEEecccCcc---ccCCCCCcccEEEEeccCCCCcccCCCcccccccccc
Q 046764 819 PNLRDLFLLRCSKLLGTLPK---HLPSLQKLVIQRCEKLL---VDLPSLPSLNELKLGGCKKGGLQKGQPIIGRRIHYGC 892 (1113)
Q Consensus 819 ~~L~~L~L~~c~~L~~~lp~---~l~~L~~L~L~~c~~L~---~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~ 892 (1113)
++|+.|+|+++ ++.+..|. .+++|+.|++++|..-. ..+..+++|++|+|++|...... .+.
T Consensus 75 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-----------~~~ 142 (452)
T 3zyi_A 75 SNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP-----------SGA 142 (452)
T ss_dssp TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCC-----------TTT
T ss_pred CCccEEECcCC-cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccC-----------hhh
Confidence 45666666665 44422222 34455555555542111 12333455555555555443321 233
Q ss_pred CCCCCCcccccccCCCCC--cCcccCCCCCCceEEEcccCCCcccccccCCCCCcccCCCCccEEEeecCCCCcccCCCC
Q 046764 893 ADTSSSLRVCLQCCNSLT--NNARVQLPLSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHILSCPSPTSIFSEN 970 (1113)
Q Consensus 893 ~~~l~~L~~L~~~~N~L~--~~~~l~~l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~c~~L~~ll~~~ 970 (1113)
+..+++|++|++.+|.+. ....+..+++|+.|++++|..+..+ +... + ..+++|++|++++|.
T Consensus 143 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i-~~~~----~-~~l~~L~~L~L~~n~--------- 207 (452)
T 3zyi_A 143 FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYI-SEGA----F-EGLFNLKYLNLGMCN--------- 207 (452)
T ss_dssp SSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE-CTTT----T-TTCTTCCEEECTTSC---------
T ss_pred hcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcccc-Chhh----c-cCCCCCCEEECCCCc---------
Confidence 444445555544444444 2233444455555555544444443 2211 1 134444444444432
Q ss_pred CcCCccCeEEEccccccccccccCCCCCCCeEEEEecCCCccccC-CC---CCCccEEEEeecCCCCcccccCCCCCCcC
Q 046764 971 ELPATLQRLEVNSCSKLALLTLSGNLPQGPKYLELTSCSKWESIA-DN---NTSLQVITVFRCKNLKTLPDGLHKLNNLQ 1046 (1113)
Q Consensus 971 ~l~~sL~~L~i~~c~~L~~l~l~~~lp~~L~~L~L~~c~~L~~lp-~~---l~sL~~L~Ls~c~~l~~lP~~l~~L~sL~ 1046 (1113)
++.+.-...++. |+.|++++| .+..++ .. +++|+.|++++|......|..+..+++|+
T Consensus 208 ----------------l~~~~~~~~l~~-L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 269 (452)
T 3zyi_A 208 ----------------IKDMPNLTPLVG-LEELEMSGN-HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV 269 (452)
T ss_dssp ----------------CSSCCCCTTCTT-CCEEECTTS-CCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ----------------cccccccccccc-ccEEECcCC-cCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCC
Confidence 222222223444 777777765 344442 22 67888888887654333366778888888
Q ss_pred eeee-ccccccccCCCC-CCCCcCcEEEeCCC
Q 046764 1047 AFTI-CKNLVSFPKGGL-PSTQLRDPDITGCQ 1076 (1113)
Q Consensus 1047 ~L~L-cn~L~slp~~~~-~~~sL~~L~l~~C~ 1076 (1113)
.|+| .|++..+|...+ .+++|+.|++++++
T Consensus 270 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 270 ELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp EEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 8888 778887776554 45678888887754
No 61
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.55 E-value=6.4e-15 Score=165.91 Aligned_cols=244 Identities=16% Similarity=0.154 Sum_probs=124.5
Q ss_pred CCcceeeccccCcCcccccCCCCcccccCCCccEEEEecCcCcccccCC---CCCCccEEEEecccC---ccccCCCCCc
Q 046764 790 PSLETLRFENMQEREDWIPYSSSQEVEVFPNLRDLFLLRCSKLLGTLPK---HLPSLQKLVIQRCEK---LLVDLPSLPS 863 (1113)
Q Consensus 790 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~lp~---~l~~L~~L~L~~c~~---L~~~l~~l~~ 863 (1113)
.+++.|+++++.--..+. .+..+..+++|++|+++++..+.+.+|. .+++|++|++++|.. ++..+..+++
T Consensus 50 ~~l~~L~L~~~~l~~~~~---~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYP---IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEE---CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred ceEEEEECCCCCccCCcc---cChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence 466777776653221001 1334556677777777753355555553 445666666665532 2223444556
Q ss_pred ccEEEEeccCCCCcccCCCccccccccccCCCCCCcccccccCCCCC--cCcccCCCC-CCceEEEcccCCCcccccccC
Q 046764 864 LNELKLGGCKKGGLQKGQPIIGRRIHYGCADTSSSLRVCLQCCNSLT--NNARVQLPL-SLKDLSIAFCDNLRTLVEEEG 940 (1113)
Q Consensus 864 L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~~l~~L~~L~~~~N~L~--~~~~l~~l~-~L~~L~Ls~c~~L~~l~~~~~ 940 (1113)
|++|++++|......+ ..+..+++|++|++..|.+. .+..+..++ +|+.|++++|. +. +.
T Consensus 127 L~~L~Ls~N~l~~~~p-----------~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~-l~-----~~ 189 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLP-----------PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR-LT-----GK 189 (313)
T ss_dssp CCEEECCSSEEESCCC-----------GGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE-EE-----EE
T ss_pred CCEEeCCCCccCCcCC-----------hHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe-ee-----cc
Confidence 6666666555443221 23344444555544444443 333344443 44555554443 11 11
Q ss_pred CCCCcccCCCCccEEEeecCCCCcccCCCCCcCCccCeEEEcccccccccc-ccCCCCCCCeEEEEecCCCccccCCC--
Q 046764 941 IPKGSRKYSSHLECLHILSCPSPTSIFSENELPATLQRLEVNSCSKLALLT-LSGNLPQGPKYLELTSCSKWESIADN-- 1017 (1113)
Q Consensus 941 lp~~l~~~l~~L~~L~L~~c~~L~~ll~~~~l~~sL~~L~i~~c~~L~~l~-l~~~lp~~L~~L~L~~c~~L~~lp~~-- 1017 (1113)
+|..+. .++ |+.|++++| .--.... .-..++. |+.|++++|.--..+|..
T Consensus 190 ~~~~~~-~l~-L~~L~Ls~N------------------------~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~ 242 (313)
T 1ogq_A 190 IPPTFA-NLN-LAFVDLSRN------------------------MLEGDASVLFGSDKN-TQKIHLAKNSLAFDLGKVGL 242 (313)
T ss_dssp CCGGGG-GCC-CSEEECCSS------------------------EEEECCGGGCCTTSC-CSEEECCSSEECCBGGGCCC
T ss_pred CChHHh-CCc-ccEEECcCC------------------------cccCcCCHHHhcCCC-CCEEECCCCceeeecCcccc
Confidence 222222 222 444444443 2111000 0112333 666666654322222222
Q ss_pred CCCccEEEEeecCCCCcccccCCCCCCcCeeee-ccccc-cccCCCCCCCCcCcEEEeCCCCCccC
Q 046764 1018 NTSLQVITVFRCKNLKTLPDGLHKLNNLQAFTI-CKNLV-SFPKGGLPSTQLRDPDITGCQKLEAL 1081 (1113)
Q Consensus 1018 l~sL~~L~Ls~c~~l~~lP~~l~~L~sL~~L~L-cn~L~-slp~~~~~~~sL~~L~l~~C~~L~~l 1081 (1113)
+++|++|++++|...+.+|..+..+++|+.|++ .|++. .+|.. ..+++|+.|++++++.+...
T Consensus 243 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp CTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred cCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCC
Confidence 678888888887655577888888888888888 66666 56654 45557777777777655443
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.54 E-value=9.3e-14 Score=164.36 Aligned_cols=213 Identities=19% Similarity=0.163 Sum_probs=113.2
Q ss_pred CCccEEEEecCcCcccccCC---CCCCccEEEEecccCcc---ccCCCCCcccEEEEeccCCCCcccCCCcccccccccc
Q 046764 819 PNLRDLFLLRCSKLLGTLPK---HLPSLQKLVIQRCEKLL---VDLPSLPSLNELKLGGCKKGGLQKGQPIIGRRIHYGC 892 (1113)
Q Consensus 819 ~~L~~L~L~~c~~L~~~lp~---~l~~L~~L~L~~c~~L~---~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~ 892 (1113)
++++.|+|++| ++.+..+. .+++|+.|++++|..-. ..+..+++|++|+|++|...... .+.
T Consensus 64 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~-----------~~~ 131 (440)
T 3zyj_A 64 TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP-----------NGA 131 (440)
T ss_dssp TTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC-----------TTT
T ss_pred CCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC-----------HhH
Confidence 55666666665 44422221 34555555555552111 12334555555555555444321 234
Q ss_pred CCCCCCcccccccCCCCC--cCcccCCCCCCceEEEcccCCCcccccccCCCCCcccCCCCccEEEeecCCCCcccCCCC
Q 046764 893 ADTSSSLRVCLQCCNSLT--NNARVQLPLSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHILSCPSPTSIFSEN 970 (1113)
Q Consensus 893 ~~~l~~L~~L~~~~N~L~--~~~~l~~l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~c~~L~~ll~~~ 970 (1113)
+..+++|++|++.+|.+. ....+..+++|+.|++++|..+..+ +... + ..+++|++|++++|.
T Consensus 132 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i-~~~~----~-~~l~~L~~L~L~~n~--------- 196 (440)
T 3zyj_A 132 FVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI-SEGA----F-EGLSNLRYLNLAMCN--------- 196 (440)
T ss_dssp SCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE-CTTT----T-TTCSSCCEEECTTSC---------
T ss_pred hhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCccee-Ccch----h-hcccccCeecCCCCc---------
Confidence 444555555555555554 3334445555555555554444443 2211 1 244555555554432
Q ss_pred CcCCccCeEEEccccccccccccCCCCCCCeEEEEecCCCccccCCC----CCCccEEEEeecCCCCcccccCCCCCCcC
Q 046764 971 ELPATLQRLEVNSCSKLALLTLSGNLPQGPKYLELTSCSKWESIADN----NTSLQVITVFRCKNLKTLPDGLHKLNNLQ 1046 (1113)
Q Consensus 971 ~l~~sL~~L~i~~c~~L~~l~l~~~lp~~L~~L~L~~c~~L~~lp~~----l~sL~~L~Ls~c~~l~~lP~~l~~L~sL~ 1046 (1113)
++.+.-...++. |+.|++++| .++.++.. +++|+.|++++|......|..+..+++|+
T Consensus 197 ----------------l~~~~~~~~l~~-L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 258 (440)
T 3zyj_A 197 ----------------LREIPNLTPLIK-LDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLV 258 (440)
T ss_dssp ----------------CSSCCCCTTCSS-CCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCC
T ss_pred ----------------CccccccCCCcc-cCEEECCCC-ccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCC
Confidence 222222223444 777777765 45554332 67888888888643333356778888888
Q ss_pred eeee-ccccccccCCCC-CCCCcCcEEEeCCC
Q 046764 1047 AFTI-CKNLVSFPKGGL-PSTQLRDPDITGCQ 1076 (1113)
Q Consensus 1047 ~L~L-cn~L~slp~~~~-~~~sL~~L~l~~C~ 1076 (1113)
.|+| .|++..+|...+ .+++|+.|+++++|
T Consensus 259 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 259 EINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp EEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred EEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 8888 778888776553 45688888887754
No 63
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.54 E-value=5.6e-14 Score=161.11 Aligned_cols=153 Identities=16% Similarity=0.171 Sum_probs=70.1
Q ss_pred CCCcceeeccccCcCcccccCCCCcccccCCCccEEEEecCcCcccccCC---CCCCccEEEEecccCc--cc-cCCCCC
Q 046764 789 FPSLETLRFENMQEREDWIPYSSSQEVEVFPNLRDLFLLRCSKLLGTLPK---HLPSLQKLVIQRCEKL--LV-DLPSLP 862 (1113)
Q Consensus 789 ~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~lp~---~l~~L~~L~L~~c~~L--~~-~l~~l~ 862 (1113)
+++|+.|+++++..+.... +..+..+++|++|++++| .+.+..|. .+++|++|++++|..- .. .+..++
T Consensus 148 l~~L~~L~l~~n~~~~~~~----~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 222 (353)
T 2z80_A 148 LTKLQILRVGNMDTFTKIQ----RKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS 222 (353)
T ss_dssp CTTCCEEEEEESSSCCEEC----TTTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTT
T ss_pred CCCCcEEECCCCccccccC----HHHccCCCCCCEEECCCC-CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcc
Confidence 4445555554443222222 123344555666666655 34433333 3345555555555311 10 011256
Q ss_pred cccEEEEeccCCCCcccCCCccccccccccCCCCCCcccccccCCCCC------cCcccCCCCCCceEEEcccCCCcccc
Q 046764 863 SLNELKLGGCKKGGLQKGQPIIGRRIHYGCADTSSSLRVCLQCCNSLT------NNARVQLPLSLKDLSIAFCDNLRTLV 936 (1113)
Q Consensus 863 ~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~~l~~L~~L~~~~N~L~------~~~~l~~l~~L~~L~Ls~c~~L~~l~ 936 (1113)
+|+.|++++|........ . .......+.++.+.+..+.+. .+..+..+++|+.|++++|. ++.+
T Consensus 223 ~L~~L~L~~n~l~~~~~~-~-------l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i- 292 (353)
T 2z80_A 223 SVECLELRDTDLDTFHFS-E-------LSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-LKSV- 292 (353)
T ss_dssp TEEEEEEESCBCTTCCCC--------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC-CCCC-
T ss_pred cccEEECCCCcccccccc-c-------cccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC-CCcc-
Confidence 666666666655442210 0 001112223333333333332 23345667777777777774 4444
Q ss_pred cccCCCCCcccCCCCccEEEeecCC
Q 046764 937 EEEGIPKGSRKYSSHLECLHILSCP 961 (1113)
Q Consensus 937 ~~~~lp~~l~~~l~~L~~L~L~~c~ 961 (1113)
| ..+...+++|++|++++++
T Consensus 293 ~-----~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 293 P-----DGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp C-----TTTTTTCTTCCEEECCSSC
T ss_pred C-----HHHHhcCCCCCEEEeeCCC
Confidence 3 2222366777777777654
No 64
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.52 E-value=2.6e-16 Score=193.88 Aligned_cols=388 Identities=14% Similarity=0.071 Sum_probs=192.6
Q ss_pred CCCCccccEEecCCCC-Cccc---C------------hhhhccccccEEeccccccccccccccc-CCCcceEEEcCCc-
Q 046764 605 GGDLKHLRHLDLSETD-IQIL---P------------ESVNTLYNLRMLMLQKCNQLEKMCSDMG-NLLKLHHLDNFDF- 666 (1113)
Q Consensus 605 i~~L~~Lr~L~Ls~~~-i~~L---P------------~~i~~L~~L~~LdL~~c~~l~~LP~~i~-~L~~L~~L~L~~~- 666 (1113)
+.++++|++|+|+++. +..+ | .....+++|++|+|++|......+..+. .+++|++|++++|
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence 4567788999998874 2211 2 2235678999999998754444455554 6889999999888
Q ss_pred eeccc-ccccccccc-ccccccceeeccccCccC-hhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhcc-CCC
Q 046764 667 CCWKD-IDSALQELK-LLHLHGALEISKLENVRD-ASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDM-LKP 742 (1113)
Q Consensus 667 ~i~~~-~~~~l~~L~-L~~L~g~L~i~~l~~~~~-~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~-L~~ 742 (1113)
.+... .+.....++ |++|. +.+.. +.+ ...........+++|+.|+++++. .. .. ...+.. ...
T Consensus 142 ~~~~~~l~~~~~~~~~L~~L~----L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~--~~---~~~l~~l~~~ 209 (594)
T 2p1m_B 142 GFSTDGLAAIAATCRNLKELD----LRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLA--SE--VS---FSALERLVTR 209 (594)
T ss_dssp EEEHHHHHHHHHHCTTCCEEE----CTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCC--SC--CC---HHHHHHHHHH
T ss_pred CCCHHHHHHHHHhCCCCCEEe----CcCCc-cCCcchHHHHHHhhcCCcCcEEEecccC--Cc--CC---HHHHHHHHHh
Confidence 33221 111122333 33332 21111 100 011112223356677777776553 00 00 011111 122
Q ss_pred CCCcceEEEeccCccccccCcccccccccCCCcccceEecCCCCCCCCCcceeeccccCcCcccc-cCCCCcccccCCCc
Q 046764 743 HQNLERFCISGYGETLRFENMQEREDWIPYSSSQEVEFYGNGCLIPFPSLETLRFENMQEREDWI-PYSSSQEVEVFPNL 821 (1113)
Q Consensus 743 ~~~L~~L~L~~~~~~~~l~~L~~L~~~Lpl~~l~~~~~~g~~~l~~~~~L~~L~L~~~~~l~~~~-~~~~~~~~~~~~~L 821 (1113)
+++|+.|++.++..... +. ..+..+++|+.|.+..+..-..+. ....+..+..+++|
T Consensus 210 ~~~L~~L~L~~~~~~~~---l~-------------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L 267 (594)
T 2p1m_B 210 CPNLKSLKLNRAVPLEK---LA-------------------TLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKEL 267 (594)
T ss_dssp CTTCCEEECCTTSCHHH---HH-------------------HHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTC
T ss_pred CCCCcEEecCCCCcHHH---HH-------------------HHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCc
Confidence 56677777766522110 00 112235667777665543200000 00001123456677
Q ss_pred cEE-EEecCcCcccccCC---CCCCccEEEEecccCccc-----cCCCCCcccEEEEeccCCCCcccCCCcccccccccc
Q 046764 822 RDL-FLLRCSKLLGTLPK---HLPSLQKLVIQRCEKLLV-----DLPSLPSLNELKLGGCKKGGLQKGQPIIGRRIHYGC 892 (1113)
Q Consensus 822 ~~L-~L~~c~~L~~~lp~---~l~~L~~L~L~~c~~L~~-----~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~ 892 (1113)
+.| .+.+.. . +.++. .+++|++|++++|. +.. .+..+++|++|++++| ... .. ....
T Consensus 268 ~~Ls~~~~~~-~-~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~-~~~-~~---------l~~l 333 (594)
T 2p1m_B 268 RCLSGFWDAV-P-AYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY-IED-AG---------LEVL 333 (594)
T ss_dssp CEEECCBTCC-G-GGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG-GHH-HH---------HHHH
T ss_pred ccccCCcccc-h-hhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc-cCH-HH---------HHHH
Confidence 776 233221 1 12332 46889999998886 321 2446888999999887 211 00 0011
Q ss_pred CCCCCCcccccc---------cCCCCC--cCccc-CCCCCCceEEEcccCCCcccccccCCCCCcccCCCCccEEEee--
Q 046764 893 ADTSSSLRVCLQ---------CCNSLT--NNARV-QLPLSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHIL-- 958 (1113)
Q Consensus 893 ~~~l~~L~~L~~---------~~N~L~--~~~~l-~~l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~-- 958 (1113)
...+++|+.|.+ ..+.++ ....+ ..+++|+.|.+ +|.+++.. .. ..+...+++|++|+++
T Consensus 334 ~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~-~~~~l~~~-~~----~~l~~~~~~L~~L~L~~~ 407 (594)
T 2p1m_B 334 ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY-FCRQMTNA-AL----ITIARNRPNMTRFRLCII 407 (594)
T ss_dssp HHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE-EESCCCHH-HH----HHHHHHCTTCCEEEEEES
T ss_pred HHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH-hcCCcCHH-HH----HHHHhhCCCcceeEeecc
Confidence 224677777744 223444 11111 24678888855 44445443 11 1122257888888888
Q ss_pred ---cCCCCcccCCCC-Cc------CCccCeEEEcccccccccc---ccCCCCCCCeEEEEecCCCccccC----CCCCCc
Q 046764 959 ---SCPSPTSIFSEN-EL------PATLQRLEVNSCSKLALLT---LSGNLPQGPKYLELTSCSKWESIA----DNNTSL 1021 (1113)
Q Consensus 959 ---~c~~L~~ll~~~-~l------~~sL~~L~i~~c~~L~~l~---l~~~lp~~L~~L~L~~c~~L~~lp----~~l~sL 1021 (1113)
+|..++. .+.. ++ .++|+.|++++ .+..-. +....+. |+.|++++|.--...+ ..+++|
T Consensus 408 ~~~~~~~l~~-~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~-L~~L~L~~~~i~~~~~~~l~~~~~~L 483 (594)
T 2p1m_B 408 EPKAPDYLTL-EPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKK-MEMLSVAFAGDSDLGMHHVLSGCDSL 483 (594)
T ss_dssp STTCCCTTTC-CCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTT-CCEEEEESCCSSHHHHHHHHHHCTTC
T ss_pred cCCCcccccC-CchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchh-ccEeeccCCCCcHHHHHHHHhcCCCc
Confidence 5666664 3221 11 12566666644 222110 1111344 7888887764211111 126778
Q ss_pred cEEEEeecCCCCccc-ccCCCCCCcCeeee
Q 046764 1022 QVITVFRCKNLKTLP-DGLHKLNNLQAFTI 1050 (1113)
Q Consensus 1022 ~~L~Ls~c~~l~~lP-~~l~~L~sL~~L~L 1050 (1113)
++|+|++|......+ ..+..+++|+.|++
T Consensus 484 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l 513 (594)
T 2p1m_B 484 RKLEIRDCPFGDKALLANASKLETMRSLWM 513 (594)
T ss_dssp CEEEEESCSCCHHHHHHTGGGGGGSSEEEE
T ss_pred CEEECcCCCCcHHHHHHHHHhCCCCCEEee
Confidence 888888776522222 23445777888887
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.52 E-value=3.8e-15 Score=168.10 Aligned_cols=39 Identities=21% Similarity=0.133 Sum_probs=27.9
Q ss_pred CCCccEEEEeecCCC-CcccccCCCCCCcCeeee--cccccc
Q 046764 1018 NTSLQVITVFRCKNL-KTLPDGLHKLNNLQAFTI--CKNLVS 1056 (1113)
Q Consensus 1018 l~sL~~L~Ls~c~~l-~~lP~~l~~L~sL~~L~L--cn~L~s 1056 (1113)
+++|+.|++++|+.. ..+|..+..+++|+.|++ ++.+..
T Consensus 236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 577888888877654 466777778888888888 555554
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.50 E-value=6.4e-15 Score=166.26 Aligned_cols=62 Identities=19% Similarity=0.230 Sum_probs=47.1
Q ss_pred CCCCccccEEecCCCCCcccC-hhhhccccccEEecccccccccccccccCCCcceEEEcCCcee
Q 046764 605 GGDLKHLRHLDLSETDIQILP-ESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNFDFCC 668 (1113)
Q Consensus 605 i~~L~~Lr~L~Ls~~~i~~LP-~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~~~~i 668 (1113)
+..+++|++|+|++|.++.++ ..++++++|++|+|++| .+..++. +..+++|++|++++|.+
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~Ls~n~l 92 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYV 92 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEECCSSEE
T ss_pred hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEECcCCcc
Confidence 345678888888888888774 67888888888888885 4554544 88888888888888754
No 67
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.49 E-value=1.8e-13 Score=153.47 Aligned_cols=86 Identities=21% Similarity=0.163 Sum_probs=43.3
Q ss_pred CCCCCcccEEEEeccCCCCcccCCCccccccccccCCCCCCcccccccCCCCC--cCcccCCCCCCceEEEcccCCCccc
Q 046764 858 LPSLPSLNELKLGGCKKGGLQKGQPIIGRRIHYGCADTSSSLRVCLQCCNSLT--NNARVQLPLSLKDLSIAFCDNLRTL 935 (1113)
Q Consensus 858 l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~~l~~L~~L~~~~N~L~--~~~~l~~l~~L~~L~Ls~c~~L~~l 935 (1113)
+..+++|++|++++|...... ...+..+++|+.|++.+|.++ ....+..+++|+.|++++|. +...
T Consensus 171 ~~~l~~L~~L~Ls~n~l~~~~-----------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~ 238 (306)
T 2z66_A 171 FTELRNLTFLDLSQCQLEQLS-----------PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH-IMTS 238 (306)
T ss_dssp CTTCTTCCEEECTTSCCCEEC-----------TTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC-CCBC
T ss_pred HhhCcCCCEEECCCCCcCCcC-----------HHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC-Cccc
Confidence 334555555555555544321 133444455555555554554 22345566777777777765 3332
Q ss_pred ccccCCCCCcccCC-CCccEEEeecCC
Q 046764 936 VEEEGIPKGSRKYS-SHLECLHILSCP 961 (1113)
Q Consensus 936 ~~~~~lp~~l~~~l-~~L~~L~L~~c~ 961 (1113)
.|..+. .+ ++|++|++++++
T Consensus 239 -----~~~~~~-~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 239 -----KKQELQ-HFPSSLAFLNLTQND 259 (306)
T ss_dssp -----SSSSCC-CCCTTCCEEECTTCC
T ss_pred -----CHHHHH-hhhccCCEEEccCCC
Confidence 222232 34 366677766543
No 68
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.49 E-value=2.3e-13 Score=152.65 Aligned_cols=59 Identities=22% Similarity=0.142 Sum_probs=40.7
Q ss_pred ccccEEecCCCCCcccChh-hhccccccEEecccccccccc---cccccCCCcceEEEcCCcee
Q 046764 609 KHLRHLDLSETDIQILPES-VNTLYNLRMLMLQKCNQLEKM---CSDMGNLLKLHHLDNFDFCC 668 (1113)
Q Consensus 609 ~~Lr~L~Ls~~~i~~LP~~-i~~L~~L~~LdL~~c~~l~~L---P~~i~~L~~L~~L~L~~~~i 668 (1113)
++|++|+|++|.++.+|.. ++++++|++|+|++| .+..+ |..+..+++|++|++++|.+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i 90 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFNGV 90 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSCSE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCCCcc
Confidence 4677777777777777654 577777788877774 34333 55666777777777777644
No 69
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.47 E-value=1.8e-13 Score=156.80 Aligned_cols=238 Identities=18% Similarity=0.100 Sum_probs=171.0
Q ss_pred cCCCccEEEEecCcCcccccCC----CCCCccEEEEecccCc---cccCCCCCcccEEEEeccCCCCcccCCCccccccc
Q 046764 817 VFPNLRDLFLLRCSKLLGTLPK----HLPSLQKLVIQRCEKL---LVDLPSLPSLNELKLGGCKKGGLQKGQPIIGRRIH 889 (1113)
Q Consensus 817 ~~~~L~~L~L~~c~~L~~~lp~----~l~~L~~L~L~~c~~L---~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~ 889 (1113)
..++|++|++++| .++ .+|. .+++|+.|++++|.-- ...+..+++|++|++++|......
T Consensus 50 ~~~~L~~L~l~~n-~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----------- 116 (353)
T 2z80_A 50 LTEAVKSLDLSNN-RIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS----------- 116 (353)
T ss_dssp CCTTCCEEECTTS-CCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCC-----------
T ss_pred ccccCcEEECCCC-cCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCC-----------
Confidence 3468999999998 676 3432 5789999999988422 124667899999999999877633
Q ss_pred cccCCCCCCcccccccCCCCC-cC--cccCCCCCCceEEEcccCCCcccccccCCCCCcccCCCCccEEEeecCCCCccc
Q 046764 890 YGCADTSSSLRVCLQCCNSLT-NN--ARVQLPLSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHILSCPSPTSI 966 (1113)
Q Consensus 890 ~~~~~~l~~L~~L~~~~N~L~-~~--~~l~~l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~c~~L~~l 966 (1113)
...+..+++|++|++.+|.+. .+ ..+..+++|+.|++++|..+..+ +. ..+ ..+++|++|++++|.. +.+
T Consensus 117 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~-~~----~~~-~~l~~L~~L~l~~n~l-~~~ 189 (353)
T 2z80_A 117 SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI-QR----KDF-AGLTFLEELEIDASDL-QSY 189 (353)
T ss_dssp HHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE-CT----TTT-TTCCEEEEEEEEETTC-CEE
T ss_pred HhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccccc-CH----HHc-cCCCCCCEEECCCCCc-Ccc
Confidence 345788999999999988888 33 36888999999999999766665 22 223 3788999999998753 331
Q ss_pred CCC--CCcCCccCeEEEccccccccccc--cCCCCCCCeEEEEecCCCccccCCC-------CCCccEEEEeecCCCC--
Q 046764 967 FSE--NELPATLQRLEVNSCSKLALLTL--SGNLPQGPKYLELTSCSKWESIADN-------NTSLQVITVFRCKNLK-- 1033 (1113)
Q Consensus 967 l~~--~~l~~sL~~L~i~~c~~L~~l~l--~~~lp~~L~~L~L~~c~~L~~lp~~-------l~sL~~L~Ls~c~~l~-- 1033 (1113)
.+. ..+ ++|++|+++++. +..+.. .+.++. |+.|++++| .++.++.. .+.++.++++++....
T Consensus 190 ~~~~l~~l-~~L~~L~l~~n~-l~~~~~~~~~~~~~-L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~ 265 (353)
T 2z80_A 190 EPKSLKSI-QNVSHLILHMKQ-HILLLEIFVDVTSS-VECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265 (353)
T ss_dssp CTTTTTTC-SEEEEEEEECSC-STTHHHHHHHHTTT-EEEEEEESC-BCTTCCCC------CCCCCCEEEEESCBCCHHH
T ss_pred CHHHHhcc-ccCCeecCCCCc-cccchhhhhhhccc-ccEEECCCC-ccccccccccccccccchhhccccccccccCcc
Confidence 222 123 378888887764 232211 112445 999999986 44443322 5778888888865322
Q ss_pred --cccccCCCCCCcCeeee-ccccccccCCC-CCCCCcCcEEEeCCCCC
Q 046764 1034 --TLPDGLHKLNNLQAFTI-CKNLVSFPKGG-LPSTQLRDPDITGCQKL 1078 (1113)
Q Consensus 1034 --~lP~~l~~L~sL~~L~L-cn~L~slp~~~-~~~~sL~~L~l~~C~~L 1078 (1113)
.+|..+..+++|+.|++ .|++..+|.+. ..+++|++|++++|+-.
T Consensus 266 l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 266 LFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp HHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence 46888899999999999 89999999876 46789999999987643
No 70
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.42 E-value=3.5e-15 Score=177.64 Aligned_cols=353 Identities=19% Similarity=0.156 Sum_probs=168.5
Q ss_pred CCeeEEccCCcC--------CCCCCccccEEecCCCCCc-----ccChhhhccccccEEecccccccccccccc-cCCC-
Q 046764 592 ENLQTFLPTTVS--------HGGDLKHLRHLDLSETDIQ-----ILPESVNTLYNLRMLMLQKCNQLEKMCSDM-GNLL- 656 (1113)
Q Consensus 592 ~~Lr~L~~~~~~--------~i~~L~~Lr~L~Ls~~~i~-----~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i-~~L~- 656 (1113)
++++.|.+.++. .+..+++|++|+|++|.+. .+|..+..+++|++|+|++|..-...+..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 345555554443 2455667777777777666 345666666777777777643222222222 2333
Q ss_pred ---cceEEEcCCceeccc----ccccccccc-ccccccceeeccccCccCh-hhHHHhh-cCCCcccceEEeeecCCCCC
Q 046764 657 ---KLHHLDNFDFCCWKD----IDSALQELK-LLHLHGALEISKLENVRDA-SEAGEAQ-LNGKKNLKTLLLQRTSNNGD 726 (1113)
Q Consensus 657 ---~L~~L~L~~~~i~~~----~~~~l~~L~-L~~L~g~L~i~~l~~~~~~-~~~~~~~-l~~l~~L~~L~L~~~~~~~~ 726 (1113)
+|++|++++|.+... .+..+..++ |++|. +.+.. +... ....... ....++|+.|++++|...+
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~----Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~- 156 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELH----LSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA- 156 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEE----CCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG-
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEE----CCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCH-
Confidence 577777777655432 233444444 44332 11110 0000 0111111 2335567777776664211
Q ss_pred CCCchhhHhhhccCCCCCCcceEEEeccCccc-cccCcccccccccCCCcccceEecCCCCCCCCCcceeeccccCcCcc
Q 046764 727 SREPEIETHVLDMLKPHQNLERFCISGYGETL-RFENMQEREDWIPYSSSQEVEFYGNGCLIPFPSLETLRFENMQERED 805 (1113)
Q Consensus 727 ~~~~~~~~~~l~~L~~~~~L~~L~L~~~~~~~-~l~~L~~L~~~Lpl~~l~~~~~~g~~~l~~~~~L~~L~L~~~~~l~~ 805 (1113)
.........+..+++|+.|+++++.... ....+.. ......++|+.|+++++.--..
T Consensus 157 ----~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~------------------~l~~~~~~L~~L~L~~n~l~~~ 214 (461)
T 1z7x_W 157 ----ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQ------------------GLKDSPCQLEALKLESCGVTSD 214 (461)
T ss_dssp ----GGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH------------------HHHHSCCCCCEEECTTSCCBTT
T ss_pred ----HHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHH------------------HHhcCCCCceEEEccCCCCcHH
Confidence 1111233444556677777777654211 0000000 0001244677777776632111
Q ss_pred cccCCCCcccccCCCccEEEEecCcCcccc--------cCCCCCCccEEEEecccCc-------cccCCCCCcccEEEEe
Q 046764 806 WIPYSSSQEVEVFPNLRDLFLLRCSKLLGT--------LPKHLPSLQKLVIQRCEKL-------LVDLPSLPSLNELKLG 870 (1113)
Q Consensus 806 ~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~--------lp~~l~~L~~L~L~~c~~L-------~~~l~~l~~L~~L~L~ 870 (1113)
.....+.....+++|++|++++| .+.+. +...+++|++|++++|.-- ...+..+++|++|+++
T Consensus 215 -~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 292 (461)
T 1z7x_W 215 -NCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLA 292 (461)
T ss_dssp -HHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECT
T ss_pred -HHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECC
Confidence 00000112335677777777777 44321 1124667777777777321 1223336777777777
Q ss_pred ccCCCCcccCCCccccccccccCCCCCCcccccccCCCCCc------CcccCCCCCCceEEEcccCCCcccccccCCCCC
Q 046764 871 GCKKGGLQKGQPIIGRRIHYGCADTSSSLRVCLQCCNSLTN------NARVQLPLSLKDLSIAFCDNLRTLVEEEGIPKG 944 (1113)
Q Consensus 871 ~~~~~~~~~~~~l~~l~l~~~~~~~l~~L~~L~~~~N~L~~------~~~l~~l~~L~~L~Ls~c~~L~~l~~~~~lp~~ 944 (1113)
+|....... ..+........++|+.|++..|.++. +..+..+++|++|++++|. +... ....+...
T Consensus 293 ~n~i~~~~~------~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~-~~~~l~~~ 364 (461)
T 1z7x_W 293 GNELGDEGA------RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDA-GVRELCQG 364 (461)
T ss_dssp TCCCHHHHH------HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHH-HHHHHHHH
T ss_pred CCCCchHHH------HHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc-cccc-cHHHHHHH
Confidence 775432110 00111112233577777666666661 2334556788888888774 4432 11111111
Q ss_pred cccCCCCccEEEeecCCCCc----ccCCCC--CcCCccCeEEEccc
Q 046764 945 SRKYSSHLECLHILSCPSPT----SIFSEN--ELPATLQRLEVNSC 984 (1113)
Q Consensus 945 l~~~l~~L~~L~L~~c~~L~----~ll~~~--~l~~sL~~L~i~~c 984 (1113)
+....++|++|++++|.--. . ++.. .+ ++|++|+++++
T Consensus 365 l~~~~~~L~~L~L~~n~i~~~~~~~-l~~~l~~~-~~L~~L~l~~N 408 (461)
T 1z7x_W 365 LGQPGSVLRVLWLADCDVSDSSCSS-LAATLLAN-HSLRELDLSNN 408 (461)
T ss_dssp HTSTTCCCCEEECTTSCCCHHHHHH-HHHHHHHC-CCCCEEECCSS
T ss_pred HcCCCCceEEEECCCCCCChhhHHH-HHHHHHhC-CCccEEECCCC
Confidence 11125678888888774221 1 1111 12 36777777665
No 71
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.42 E-value=3.6e-12 Score=145.82 Aligned_cols=217 Identities=18% Similarity=0.189 Sum_probs=134.2
Q ss_pred EEEEecCcCcccccCCCC-CCccEEEEeccc--Cccc-cCCCCCcccEEEEeccCCCCcccCCCccccccccccCCCCCC
Q 046764 823 DLFLLRCSKLLGTLPKHL-PSLQKLVIQRCE--KLLV-DLPSLPSLNELKLGGCKKGGLQKGQPIIGRRIHYGCADTSSS 898 (1113)
Q Consensus 823 ~L~L~~c~~L~~~lp~~l-~~L~~L~L~~c~--~L~~-~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~~l~~ 898 (1113)
+++.++. +++ .+|..+ +++++|++++|. .+.. .+..+++|++|+|++|...+..+ .+.+.++++
T Consensus 13 ~v~C~~~-~Lt-~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~----------~~~f~~L~~ 80 (350)
T 4ay9_X 13 VFLCQES-KVT-EIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE----------ADVFSNLPK 80 (350)
T ss_dssp EEEEEST-TCC-SCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEEC----------TTSBCSCTT
T ss_pred EEEecCC-CCC-ccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccC----------hhHhhcchh
Confidence 4444443 455 666544 467777777763 2222 35668889999999888765332 356677777
Q ss_pred cccc-cccCCCCC--cCcccCCCCCCceEEEcccCCCcccccccCCCCCcccCCCCccEEEeecCCCCcccCCCCCcCCc
Q 046764 899 LRVC-LQCCNSLT--NNARVQLPLSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHILSCPSPTSIFSENELPAT 975 (1113)
Q Consensus 899 L~~L-~~~~N~L~--~~~~l~~l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~c~~L~~ll~~~~l~~s 975 (1113)
|..+ ....|++. .+..+..+++|+.|++++|. ++.+ +... + ....++..|++.++..+.. ++...+.
T Consensus 81 l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~-~~~~----~-~~~~~l~~l~l~~~~~i~~-l~~~~f~-- 150 (350)
T 4ay9_X 81 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHL-PDVH----K-IHSLQKVLLDIQDNINIHT-IERNSFV-- 150 (350)
T ss_dssp CCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEEC-CSSC-CCCT----T-CCBSSCEEEEEESCTTCCE-ECTTSST--
T ss_pred hhhhhcccCCcccccCchhhhhccccccccccccc-cccC-Cchh----h-cccchhhhhhhcccccccc-ccccchh--
Confidence 6665 55556777 55677888888888888875 5554 3222 1 1445677777777766666 3333222
Q ss_pred cCeEEEccccccccccccCCCCCCCeEEEEecCCCccccCCC---CCCccEEEEeecCCCCcccc-cCCCCCCcCeeee-
Q 046764 976 LQRLEVNSCSKLALLTLSGNLPQGPKYLELTSCSKWESIADN---NTSLQVITVFRCKNLKTLPD-GLHKLNNLQAFTI- 1050 (1113)
Q Consensus 976 L~~L~i~~c~~L~~l~l~~~lp~~L~~L~L~~c~~L~~lp~~---l~sL~~L~Ls~c~~l~~lP~-~l~~L~sL~~L~L- 1050 (1113)
.++..++.|++++ +.++.+|.. .++|++|++++|+.++.+|. .+..+++|+.|++
T Consensus 151 -------------------~~~~~l~~L~L~~-N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs 210 (350)
T 4ay9_X 151 -------------------GLSFESVILWLNK-NGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDIS 210 (350)
T ss_dssp -------------------TSBSSCEEEECCS-SCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECT
T ss_pred -------------------hcchhhhhhcccc-ccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcC
Confidence 1111155555555 355555554 45677777776667777764 3567777777777
Q ss_pred ccccccccCCCCCCCCcCcEEEeCCCCCccCCC
Q 046764 1051 CKNLVSFPKGGLPSTQLRDPDITGCQKLEALPD 1083 (1113)
Q Consensus 1051 cn~L~slp~~~~~~~sL~~L~l~~C~~L~~l~~ 1083 (1113)
.|+++++|.+.+. +|+.|.+.+|.+++.+|.
T Consensus 211 ~N~l~~lp~~~~~--~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 211 RTRIHSLPSYGLE--NLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp TSCCCCCCSSSCT--TCCEEECTTCTTCCCCCC
T ss_pred CCCcCccChhhhc--cchHhhhccCCCcCcCCC
Confidence 7777777765433 677777777777777775
No 72
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.41 E-value=1.9e-12 Score=139.61 Aligned_cols=75 Identities=15% Similarity=0.233 Sum_probs=43.7
Q ss_pred Ce-EEEEecCCCccccCCC---CCCccEEEEeecCCCCccc-ccCCCC-CCcCeeee-ccccccccCCCCCCCCcCcEEE
Q 046764 1000 PK-YLELTSCSKWESIADN---NTSLQVITVFRCKNLKTLP-DGLHKL-NNLQAFTI-CKNLVSFPKGGLPSTQLRDPDI 1072 (1113)
Q Consensus 1000 L~-~L~L~~c~~L~~lp~~---l~sL~~L~Ls~c~~l~~lP-~~l~~L-~sL~~L~L-cn~L~slp~~~~~~~sL~~L~l 1072 (1113)
|+ .|+++++ .++.+|.. .++|+.|++++|..++.+| ..+..+ ++|+.|++ .|++..+|... +++|+.|++
T Consensus 157 L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~--~~~L~~L~l 233 (239)
T 2xwt_C 157 ETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKG--LEHLKELIA 233 (239)
T ss_dssp SEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTT--CTTCSEEEC
T ss_pred ceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhH--hccCceeec
Confidence 44 4555443 34444443 3567777777764466664 345666 77777777 66777776652 336777777
Q ss_pred eCCCC
Q 046764 1073 TGCQK 1077 (1113)
Q Consensus 1073 ~~C~~ 1077 (1113)
+++..
T Consensus 234 ~~~~~ 238 (239)
T 2xwt_C 234 RNTWT 238 (239)
T ss_dssp TTC--
T ss_pred cCccC
Confidence 66654
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.40 E-value=7.3e-13 Score=158.44 Aligned_cols=61 Identities=20% Similarity=0.238 Sum_probs=47.7
Q ss_pred CCCccccEEecCCCCCccc-ChhhhccccccEEecccccccccccccccCCCcceEEEcCCcee
Q 046764 606 GDLKHLRHLDLSETDIQIL-PESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNFDFCC 668 (1113)
Q Consensus 606 ~~L~~Lr~L~Ls~~~i~~L-P~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~~~~i 668 (1113)
..+++|++|+|++|.+..+ |..|+.+++|++|+|++| .+...+. ++.+++|++|++++|.+
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l 92 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYV 92 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSSEE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCCcC
Confidence 3455889999999988877 468888999999999885 4554444 88888999999888754
No 74
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.39 E-value=2.9e-13 Score=126.61 Aligned_cols=79 Identities=19% Similarity=0.309 Sum_probs=70.5
Q ss_pred HHhHHHHHHHHHHHHhhhccchhhhhccchhhHHHhHHHHHHHHHHhchHHHHHHHHHHHhh--ccchHHHHHHHHHHHH
Q 046764 198 VVGYIGCLADILLNQHGKHKAADIMGRIGASAAVFGFLTMMGTLIEVNPAVINAVIDDAEEK--QKREQSVKMWLGELQN 275 (1113)
Q Consensus 198 v~~~l~kl~~~l~~e~~~~~~v~~~~~~~d~~~i~~e~~~~~~fl~~~l~~i~~~l~dae~~--~~~~~~v~~W~~~lr~ 275 (1113)
|.++++||++++.+|+.+++|| ++|++++++|+++|++| +.|++++ +.++++++.|+++||+
T Consensus 3 v~~ll~KL~~ll~~E~~l~~gv-----~~~i~~Lk~eL~~m~a~-----------L~da~~~~~~~~d~~vk~W~~~vrd 66 (115)
T 3qfl_A 3 ISNLIPKLGELLTEEFKLHKGV-----KKNIEDLGKELESMNAA-----------LIKIGEVPREQLDSQDKLWADEVRE 66 (115)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH-----------HHHHTTSCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhch-----HHHHHHHHHHHHHHHHH-----------HHHHHHhccccCCHHHHHHHHHHHH
Confidence 4467899999999999999999 99999999988888888 4558877 5689999999999999
Q ss_pred HHhhhhhhhhhhhhhhh
Q 046764 276 LAYDVDVLLDEFETEAT 292 (1113)
Q Consensus 276 ~ayd~ed~id~~~~~~~ 292 (1113)
+|||+||+||+|.++..
T Consensus 67 laYD~ED~iD~f~~~~~ 83 (115)
T 3qfl_A 67 LSYVIEDVVDKFLVQVD 83 (115)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999998764
No 75
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.38 E-value=3.4e-12 Score=141.49 Aligned_cols=52 Identities=10% Similarity=0.067 Sum_probs=24.8
Q ss_pred cEEecCCCCCcccChhhhccccccEEeccccccccccc-ccccCCCcceEEEcCCc
Q 046764 612 RHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMC-SDMGNLLKLHHLDNFDF 666 (1113)
Q Consensus 612 r~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP-~~i~~L~~L~~L~L~~~ 666 (1113)
++++.+++.++.+|..+ .++|++|++++| .+..+| ..+.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n 66 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSN 66 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCC
Confidence 34455555555555433 235555555553 333333 23455555555555544
No 76
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.38 E-value=2.8e-13 Score=152.36 Aligned_cols=67 Identities=12% Similarity=0.007 Sum_probs=50.3
Q ss_pred CCCCCccccEEecCCCCCcccChhhhccccccEEecccccc-ccccccccc-------CCCcceEEEcCCceeccccc
Q 046764 604 HGGDLKHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQ-LEKMCSDMG-------NLLKLHHLDNFDFCCWKDID 673 (1113)
Q Consensus 604 ~i~~L~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~-l~~LP~~i~-------~L~~L~~L~L~~~~i~~~~~ 673 (1113)
.++..++|++|++++|.+ .+|..+... |++|+|++|.. -..+|..+. ++++|++|++++|.+....|
T Consensus 38 ~~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EEEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred EEccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 346678899999999999 889888765 89999998543 234666665 78999999999886644333
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.36 E-value=3.7e-13 Score=160.98 Aligned_cols=230 Identities=15% Similarity=0.114 Sum_probs=142.0
Q ss_pred CCCCcceeeccccCcCcccccCCCCcccccCCCccEEEEecCcCcccccC-CCCCCccEEEEecccCccccCCCCCcccE
Q 046764 788 PFPSLETLRFENMQEREDWIPYSSSQEVEVFPNLRDLFLLRCSKLLGTLP-KHLPSLQKLVIQRCEKLLVDLPSLPSLNE 866 (1113)
Q Consensus 788 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~lp-~~l~~L~~L~L~~c~~L~~~l~~l~~L~~ 866 (1113)
.+++|+.|+|+++. +.... +..+..+++|+.|+|++| .+.+..| ..+++|+.|++++|. +. .++..++|+.
T Consensus 32 ~~~~L~~L~Ls~n~-l~~~~----~~~~~~l~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~-l~-~l~~~~~L~~ 103 (487)
T 3oja_A 32 SAWNVKELDLSGNP-LSQIS----AADLAPFTKLELLNLSSN-VLYETLDLESLSTLRTLDLNNNY-VQ-ELLVGPSIET 103 (487)
T ss_dssp TGGGCCEEECCSSC-CCCCC----GGGGTTCTTCCEEECTTS-CCEEEEECTTCTTCCEEECCSSE-EE-EEEECTTCCE
T ss_pred cCCCccEEEeeCCc-CCCCC----HHHHhCCCCCCEEEeeCC-CCCCCcccccCCCCCEEEecCCc-CC-CCCCCCCcCE
Confidence 46689999998863 33222 345678899999999998 5654333 467889999998884 22 3344588999
Q ss_pred EEEeccCCCCcccCCCccccccccccCCCCCCcccccccCCCCC--cCcccCCCCCCceEEEcccCCCcccccccCCCCC
Q 046764 867 LKLGGCKKGGLQKGQPIIGRRIHYGCADTSSSLRVCLQCCNSLT--NNARVQLPLSLKDLSIAFCDNLRTLVEEEGIPKG 944 (1113)
Q Consensus 867 L~L~~~~~~~~~~~~~l~~l~l~~~~~~~l~~L~~L~~~~N~L~--~~~~l~~l~~L~~L~Ls~c~~L~~l~~~~~lp~~ 944 (1113)
|++++|......+ ..+++|+.|++.+|.+. .+..+..+++|+.|++++|. +... .|..
T Consensus 104 L~L~~N~l~~~~~--------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~-----~~~~ 163 (487)
T 3oja_A 104 LHAANNNISRVSC--------------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTV-----NFAE 163 (487)
T ss_dssp EECCSSCCCCEEE--------------CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC-CCEE-----EGGG
T ss_pred EECcCCcCCCCCc--------------cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC-CCCc-----ChHH
Confidence 9999988776332 24577888888887887 45566778888888888875 4443 2233
Q ss_pred cccCCCCccEEEeecCCCCcccCCCCCcCCccCeEEEccccccccccccCCCCCCCeEEEEecCCCccccCCC---CCCc
Q 046764 945 SRKYSSHLECLHILSCPSPTSIFSENELPATLQRLEVNSCSKLALLTLSGNLPQGPKYLELTSCSKWESIADN---NTSL 1021 (1113)
Q Consensus 945 l~~~l~~L~~L~L~~c~~L~~ll~~~~l~~sL~~L~i~~c~~L~~l~l~~~lp~~L~~L~L~~c~~L~~lp~~---l~sL 1021 (1113)
+...+++|++|++++|. ++. ++.....++ |+.|++++| .+..+|.. +++|
T Consensus 164 l~~~l~~L~~L~Ls~N~-l~~-~~~~~~l~~------------------------L~~L~Ls~N-~l~~~~~~~~~l~~L 216 (487)
T 3oja_A 164 LAASSDTLEHLNLQYNF-IYD-VKGQVVFAK------------------------LKTLDLSSN-KLAFMGPEFQSAAGV 216 (487)
T ss_dssp GGGGTTTCCEEECTTSC-CCE-EECCCCCTT------------------------CCEEECCSS-CCCEECGGGGGGTTC
T ss_pred HhhhCCcccEEecCCCc-ccc-ccccccCCC------------------------CCEEECCCC-CCCCCCHhHcCCCCc
Confidence 33357788888887764 333 111111223 444555443 34444333 5667
Q ss_pred cEEEEeecCCCCcccccCCCCCCcCeeee-ccccc--cccCCCCCCCCcCcEEEe
Q 046764 1022 QVITVFRCKNLKTLPDGLHKLNNLQAFTI-CKNLV--SFPKGGLPSTQLRDPDIT 1073 (1113)
Q Consensus 1022 ~~L~Ls~c~~l~~lP~~l~~L~sL~~L~L-cn~L~--slp~~~~~~~sL~~L~l~ 1073 (1113)
+.|++++| .+..+|..+..+++|+.|++ .|.+. .+|.....++.|+.+++.
T Consensus 217 ~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 217 TWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp SEEECTTS-CCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred cEEEecCC-cCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 77777764 35566666666777777777 55554 333322233344444443
No 78
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.34 E-value=1.2e-11 Score=137.03 Aligned_cols=209 Identities=15% Similarity=0.132 Sum_probs=121.4
Q ss_pred cEEEEecCcCcccccCC-CCCCccEEEEecccCcc---ccCCCCCcccEEEEeccCCCCcccCCCccccccccccCCCCC
Q 046764 822 RDLFLLRCSKLLGTLPK-HLPSLQKLVIQRCEKLL---VDLPSLPSLNELKLGGCKKGGLQKGQPIIGRRIHYGCADTSS 897 (1113)
Q Consensus 822 ~~L~L~~c~~L~~~lp~-~l~~L~~L~L~~c~~L~---~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~~l~ 897 (1113)
+.++.++. .++ .+|. ..++|++|+++++..-. ..+..+++|++|++++|...... ...+..++
T Consensus 14 ~~~~c~~~-~l~-~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~-----------~~~~~~l~ 80 (285)
T 1ozn_A 14 VTTSCPQQ-GLQ-AVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-----------AAAFTGLA 80 (285)
T ss_dssp CEEECCSS-CCS-SCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-----------TTTTTTCT
T ss_pred eEEEcCcC-Ccc-cCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC-----------HhhcCCcc
Confidence 45666665 566 6675 44689999998874222 23566888999999888766532 35677778
Q ss_pred CcccccccCCC-CC--cCcccCCCCCCceEEEcccCCCcccccccCCCCCcccCCCCccEEEeecCCCCcccCCCCCcCC
Q 046764 898 SLRVCLQCCNS-LT--NNARVQLPLSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHILSCPSPTSIFSENELPA 974 (1113)
Q Consensus 898 ~L~~L~~~~N~-L~--~~~~l~~l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~c~~L~~ll~~~~l~~ 974 (1113)
+|++|++..|. +. .+..+..+++|++|++++|. +..+ .|..+ ..+++|++|+++++. ++. ++...+
T Consensus 81 ~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~-----~~~~~-~~l~~L~~L~l~~n~-l~~-~~~~~~-- 149 (285)
T 1ozn_A 81 LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQEL-----GPGLF-RGLAALQYLYLQDNA-LQA-LPDDTF-- 149 (285)
T ss_dssp TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCC-----CTTTT-TTCTTCCEEECCSSC-CCC-CCTTTT--
T ss_pred CCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEE-----CHhHh-hCCcCCCEEECCCCc-ccc-cCHhHh--
Confidence 88888777775 65 35667778888888888776 4333 22223 367788888887754 223 221111
Q ss_pred ccCeEEEccccccccccccCCCCCCCeEEEEecCCCccccCCC----CCCccEEEEeecCCCCcccccCCCCCCcCeeee
Q 046764 975 TLQRLEVNSCSKLALLTLSGNLPQGPKYLELTSCSKWESIADN----NTSLQVITVFRCKNLKTLPDGLHKLNNLQAFTI 1050 (1113)
Q Consensus 975 sL~~L~i~~c~~L~~l~l~~~lp~~L~~L~L~~c~~L~~lp~~----l~sL~~L~Ls~c~~l~~lP~~l~~L~sL~~L~L 1050 (1113)
+.++. |+.|++++| .++.++.. +++|++|++++|......|..+..+++|+.|++
T Consensus 150 -------------------~~l~~-L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 208 (285)
T 1ozn_A 150 -------------------RDLGN-LTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208 (285)
T ss_dssp -------------------TTCTT-CCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred -------------------ccCCC-ccEEECCCC-cccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeC
Confidence 01222 444444443 33333332 456666666665433333555666666666666
Q ss_pred -ccccccccCC-CCCCCCcCcEEEeCC
Q 046764 1051 -CKNLVSFPKG-GLPSTQLRDPDITGC 1075 (1113)
Q Consensus 1051 -cn~L~slp~~-~~~~~sL~~L~l~~C 1075 (1113)
.|.+..+|.. ...+++|+.|+++++
T Consensus 209 ~~n~l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 209 FANNLSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp CSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred CCCcCCcCCHHHcccCcccCEEeccCC
Confidence 5555555432 223445666666554
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.32 E-value=6.6e-12 Score=140.81 Aligned_cols=61 Identities=25% Similarity=0.260 Sum_probs=51.0
Q ss_pred CCCCccccEEecCCCCCcccChhhhccccccEEecccccccccccccccCCCcceEEEcCCcee
Q 046764 605 GGDLKHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNFDFCC 668 (1113)
Q Consensus 605 i~~L~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~~~~i 668 (1113)
+.++++|++|++++|.+..+| .+..+++|++|++++| .+..+|. +.++++|++|++++|.+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~l 97 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPL 97 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCCC
T ss_pred HHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCcC
Confidence 345788899999999998887 6889999999999985 6777777 88999999999988743
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.32 E-value=1.8e-11 Score=135.98 Aligned_cols=62 Identities=11% Similarity=0.107 Sum_probs=50.3
Q ss_pred CCCCCccccEEecCCCCCcccChhhhccccccEEecccccccccc-cccccCCCcceEEEcCCcee
Q 046764 604 HGGDLKHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKM-CSDMGNLLKLHHLDNFDFCC 668 (1113)
Q Consensus 604 ~i~~L~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~L-P~~i~~L~~L~~L~L~~~~i 668 (1113)
.++++++|+.+++++++++.+|..+. ++|++|+|++|. +..+ |..+.++++|++|++++|.+
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~l 67 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAEL 67 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSCC
T ss_pred cccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCcc
Confidence 35678889999999999999988775 689999999864 4444 56789999999999988743
No 81
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.31 E-value=4.2e-12 Score=142.76 Aligned_cols=67 Identities=16% Similarity=0.195 Sum_probs=44.1
Q ss_pred ccEEecCCCCCc--ccChhhh-------ccccccEEecccccccccccccc--cCCCcceEEEcCCceecccccccccc
Q 046764 611 LRHLDLSETDIQ--ILPESVN-------TLYNLRMLMLQKCNQLEKMCSDM--GNLLKLHHLDNFDFCCWKDIDSALQE 678 (1113)
Q Consensus 611 Lr~L~Ls~~~i~--~LP~~i~-------~L~~L~~LdL~~c~~l~~LP~~i--~~L~~L~~L~L~~~~i~~~~~~~l~~ 678 (1113)
|++|+|++|.+. .+|..+. ++++|++|+|++|.....+|..+ +.+++|++|++++|.+... |..+..
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~ 142 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAE 142 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHH
Confidence 677777777774 3566555 67777788887754444677765 7777777887777765443 433333
No 82
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.30 E-value=3.6e-11 Score=137.43 Aligned_cols=54 Identities=13% Similarity=0.111 Sum_probs=45.1
Q ss_pred cEEecCCCCCcccChhhhccccccEEecccccccccccc-cccCCCcceEEEcCCcee
Q 046764 612 RHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCS-DMGNLLKLHHLDNFDFCC 668 (1113)
Q Consensus 612 r~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~-~i~~L~~L~~L~L~~~~i 668 (1113)
++++.++++++++|..+ .+++++|+|++ +.++.+|. .|.+|++|++|++++|.+
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~N~i 66 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVL-TKLRVIQKGAFSGFGDLEKIEISQNDV 66 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEES-CCCSEECTTSSTTCTTCCEEEEECCTT
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccC-CcCCCcCHHHHcCCCCCCEEECcCCCC
Confidence 57788888999999877 46899999998 57888986 479999999999998744
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.28 E-value=3.7e-11 Score=133.43 Aligned_cols=100 Identities=20% Similarity=0.106 Sum_probs=58.2
Q ss_pred cccCCCccEEEEecCcCcccccCCC-CCCccEEEEecccCc---cccCCCCCcccEEEEeccCCCCcccCCCcccccccc
Q 046764 815 VEVFPNLRDLFLLRCSKLLGTLPKH-LPSLQKLVIQRCEKL---LVDLPSLPSLNELKLGGCKKGGLQKGQPIIGRRIHY 890 (1113)
Q Consensus 815 ~~~~~~L~~L~L~~c~~L~~~lp~~-l~~L~~L~L~~c~~L---~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~ 890 (1113)
.+.+++|++++++++ .++ .+|.. .++|+.|++++|..- ...+..+++|+.|++++|......+
T Consensus 6 ~~~l~~l~~l~~~~~-~l~-~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----------- 72 (290)
T 1p9a_G 6 VSKVASHLEVNCDKR-NLT-ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV----------- 72 (290)
T ss_dssp EECSTTCCEEECTTS-CCS-SCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-----------
T ss_pred ccccCCccEEECCCC-CCC-cCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-----------
Confidence 356788999999887 676 66653 356777777776421 1234556777777777766544221
Q ss_pred ccCCCCCCcccccccCCCCC-cCcccCCCCCCceEEEccc
Q 046764 891 GCADTSSSLRVCLQCCNSLT-NNARVQLPLSLKDLSIAFC 929 (1113)
Q Consensus 891 ~~~~~l~~L~~L~~~~N~L~-~~~~l~~l~~L~~L~Ls~c 929 (1113)
...+++|+.|++.+|.+. .+..+..+++|+.|++++|
T Consensus 73 --~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N 110 (290)
T 1p9a_G 73 --DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN 110 (290)
T ss_dssp --CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSS
T ss_pred --CCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCC
Confidence 134455555555555554 3334444555555555554
No 84
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.28 E-value=7.7e-11 Score=129.41 Aligned_cols=56 Identities=23% Similarity=0.227 Sum_probs=43.0
Q ss_pred cccEEecCCCCCcccChhhhccccccEEecccccccccccc-cccCCCcceEEEcCCcee
Q 046764 610 HLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCS-DMGNLLKLHHLDNFDFCC 668 (1113)
Q Consensus 610 ~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~-~i~~L~~L~~L~L~~~~i 668 (1113)
..+++++++++++.+|..+. .+|++|+|++| .+..+|. .++++++|++|++++|.+
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l 73 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKL 73 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCC
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCcc
Confidence 46788888888888887665 57888888885 5666664 678888888888887743
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.27 E-value=4.3e-13 Score=152.43 Aligned_cols=70 Identities=9% Similarity=0.001 Sum_probs=43.1
Q ss_pred ccccEEecCCCCCcccChhhhccccccEEeccccccccc-ccccccCCCcceEEEcCCceecccccccccc
Q 046764 609 KHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEK-MCSDMGNLLKLHHLDNFDFCCWKDIDSALQE 678 (1113)
Q Consensus 609 ~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~-LP~~i~~L~~L~~L~L~~~~i~~~~~~~l~~ 678 (1113)
.++++|++++|.+...+..+..+++|++|++++|..... +|..+.++++|++|++++|.+....+..+..
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~ 140 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK 140 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc
Confidence 667777777777766655566677777777777542222 6666677777777777776543333333333
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.26 E-value=1.9e-11 Score=134.53 Aligned_cols=80 Identities=19% Similarity=0.223 Sum_probs=57.8
Q ss_pred cCCCCCeeEEccCCcC-----CCCCCccccEEecCCCCCcccChhhhccccccEEeccccccccccccc-ccCCCcceEE
Q 046764 588 FFEFENLQTFLPTTVS-----HGGDLKHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCSD-MGNLLKLHHL 661 (1113)
Q Consensus 588 ~~~l~~Lr~L~~~~~~-----~i~~L~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~-i~~L~~L~~L 661 (1113)
...+++|+.|.+.++. .++.+++|++|+|++|.+..++ .++.+++|++|++++| .+..+|.. ++++++|++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEE
T ss_pred cccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEE
Confidence 3456667777666554 5677888888888888887764 6788888888888875 55555544 5788888888
Q ss_pred EcCCceec
Q 046764 662 DNFDFCCW 669 (1113)
Q Consensus 662 ~L~~~~i~ 669 (1113)
++++|.+.
T Consensus 115 ~L~~n~l~ 122 (272)
T 3rfs_A 115 VLVENQLQ 122 (272)
T ss_dssp ECTTSCCC
T ss_pred ECCCCcCC
Confidence 88887554
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.25 E-value=2e-11 Score=131.39 Aligned_cols=59 Identities=22% Similarity=0.292 Sum_probs=45.6
Q ss_pred cccEEecCCCCCcccCh-hhhccccccEEecccccccccccc-cccCCCcceEEEcCC-cee
Q 046764 610 HLRHLDLSETDIQILPE-SVNTLYNLRMLMLQKCNQLEKMCS-DMGNLLKLHHLDNFD-FCC 668 (1113)
Q Consensus 610 ~Lr~L~Ls~~~i~~LP~-~i~~L~~L~~LdL~~c~~l~~LP~-~i~~L~~L~~L~L~~-~~i 668 (1113)
+|++|+|++|+++.+|. .++++++|++|++++|..+..+|. .+.++++|++|++++ |.+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l 93 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL 93 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTC
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCe
Confidence 78888888888888765 688888888888888544777765 578888888888876 543
No 88
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.25 E-value=3.3e-11 Score=132.81 Aligned_cols=59 Identities=22% Similarity=0.234 Sum_probs=42.8
Q ss_pred ccccEEecCCCCCcccCh-hhhccccccEEecccccccccccc-cccCCCcceEEEcCCcee
Q 046764 609 KHLRHLDLSETDIQILPE-SVNTLYNLRMLMLQKCNQLEKMCS-DMGNLLKLHHLDNFDFCC 668 (1113)
Q Consensus 609 ~~Lr~L~Ls~~~i~~LP~-~i~~L~~L~~LdL~~c~~l~~LP~-~i~~L~~L~~L~L~~~~i 668 (1113)
++|++|+|++|+++.+|. .++++++|++|++++| .+..+|. .+.++++|++|++++|.+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCcc
Confidence 357888888888877754 7788888888888875 4555543 577788888888877643
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.23 E-value=3e-12 Score=145.42 Aligned_cols=57 Identities=12% Similarity=0.215 Sum_probs=47.4
Q ss_pred cccEEecCCCCCcccChhhhcc--ccccEEecccccccccccccccCCCcceEEEcCCceec
Q 046764 610 HLRHLDLSETDIQILPESVNTL--YNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNFDFCCW 669 (1113)
Q Consensus 610 ~Lr~L~Ls~~~i~~LP~~i~~L--~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~~~~i~ 669 (1113)
.++.|+++++.+. |..++.+ +++++|++++| .+...+..+.++++|++|++++|.+.
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~l~ 106 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIE 106 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCEEC
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCc-cccccchhhccCCCCCEEEccCCCcC
Confidence 3678899988776 6778888 99999999985 56666677889999999999998664
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.22 E-value=5.7e-11 Score=133.13 Aligned_cols=190 Identities=16% Similarity=0.164 Sum_probs=116.1
Q ss_pred ccCCCccEEEEecCcCcccccCC--CCCCccEEEEeccc--CccccCCCCCcccEEEEeccCCCCcccCCCccccccccc
Q 046764 816 EVFPNLRDLFLLRCSKLLGTLPK--HLPSLQKLVIQRCE--KLLVDLPSLPSLNELKLGGCKKGGLQKGQPIIGRRIHYG 891 (1113)
Q Consensus 816 ~~~~~L~~L~L~~c~~L~~~lp~--~l~~L~~L~L~~c~--~L~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~ 891 (1113)
..+++|+.|++++| .+. .+|. .+++|+.|++++|. .+.. +..+++|++|++++|..... .
T Consensus 38 ~~l~~L~~L~l~~~-~i~-~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~-------------~ 101 (308)
T 1h6u_A 38 ADLDGITTLSAFGT-GVT-TIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNV-------------S 101 (308)
T ss_dssp HHHHTCCEEECTTS-CCC-CCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCC-------------G
T ss_pred HHcCCcCEEEeeCC-Ccc-CchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCc-------------h
Confidence 35788888988888 565 4553 56778888887773 2332 56677888888887775542 2
Q ss_pred cCCCCCCcccccccCCCCCcCcccCCCCCCceEEEcccCCCcccccccCCCCCcccCCCCccEEEeecCCCCcccCCCCC
Q 046764 892 CADTSSSLRVCLQCCNSLTNNARVQLPLSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHILSCPSPTSIFSENE 971 (1113)
Q Consensus 892 ~~~~l~~L~~L~~~~N~L~~~~~l~~l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~c~~L~~ll~~~~ 971 (1113)
.+..+++|+.|++.+|.+.....+..+++|+.|++++|. +..+ +. + ..+++|++|++++|. ++. ++
T Consensus 102 ~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~-l~~~-~~------l-~~l~~L~~L~l~~n~-l~~-~~--- 167 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQ-ITNI-SP------L-AGLTNLQYLSIGNAQ-VSD-LT--- 167 (308)
T ss_dssp GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSC-CCCC-GG------G-GGCTTCCEEECCSSC-CCC-CG---
T ss_pred hhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCc-cCcC-cc------c-cCCCCccEEEccCCc-CCC-Ch---
Confidence 355666667776666666643446666777777776664 4443 21 1 256666666666552 222 11
Q ss_pred cCCccCeEEEccccccccccccCCCCCCCeEEEEecCCCccccCCC--CCCccEEEEeecCCCCcccccCCCCCCcCeee
Q 046764 972 LPATLQRLEVNSCSKLALLTLSGNLPQGPKYLELTSCSKWESIADN--NTSLQVITVFRCKNLKTLPDGLHKLNNLQAFT 1049 (1113)
Q Consensus 972 l~~sL~~L~i~~c~~L~~l~l~~~lp~~L~~L~L~~c~~L~~lp~~--l~sL~~L~Ls~c~~l~~lP~~l~~L~sL~~L~ 1049 (1113)
....++. |+.|++++| .++.++.. +++|++|++++| .+..++ .+..+++|+.|+
T Consensus 168 --------------------~l~~l~~-L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~ 223 (308)
T 1h6u_A 168 --------------------PLANLSK-LTTLKADDN-KISDISPLASLPNLIEVHLKNN-QISDVS-PLANTSNLFIVT 223 (308)
T ss_dssp --------------------GGTTCTT-CCEEECCSS-CCCCCGGGGGCTTCCEEECTTS-CCCBCG-GGTTCTTCCEEE
T ss_pred --------------------hhcCCCC-CCEEECCCC-ccCcChhhcCCCCCCEEEccCC-ccCccc-cccCCCCCCEEE
Confidence 1112333 555665554 34444322 678888888886 456665 377888888888
Q ss_pred e-ccccccccC
Q 046764 1050 I-CKNLVSFPK 1059 (1113)
Q Consensus 1050 L-cn~L~slp~ 1059 (1113)
+ .|.+...|.
T Consensus 224 l~~N~i~~~~~ 234 (308)
T 1h6u_A 224 LTNQTITNQPV 234 (308)
T ss_dssp EEEEEEECCCE
T ss_pred ccCCeeecCCe
Confidence 8 777766553
No 91
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.20 E-value=2.6e-10 Score=125.14 Aligned_cols=56 Identities=23% Similarity=0.199 Sum_probs=35.1
Q ss_pred CCccEEEEecCcCcccccCCCC-CCccEEEEeccc--Ccc-ccCCCCCcccEEEEeccCCCC
Q 046764 819 PNLRDLFLLRCSKLLGTLPKHL-PSLQKLVIQRCE--KLL-VDLPSLPSLNELKLGGCKKGG 876 (1113)
Q Consensus 819 ~~L~~L~L~~c~~L~~~lp~~l-~~L~~L~L~~c~--~L~-~~l~~l~~L~~L~L~~~~~~~ 876 (1113)
++++.+++++. .++ .+|..+ ++|++|++++|. .+. ..+..+++|++|++++|....
T Consensus 16 ~~~~~l~~~~~-~l~-~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 75 (270)
T 2o6q_A 16 NNKNSVDCSSK-KLT-AIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT 75 (270)
T ss_dssp TTTTEEECTTS-CCS-SCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC
T ss_pred CCCCEEEccCC-CCC-ccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe
Confidence 45778888877 676 677644 457777777763 121 134456677777777766543
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.18 E-value=2.7e-12 Score=149.01 Aligned_cols=237 Identities=16% Similarity=0.143 Sum_probs=123.1
Q ss_pred CCCCCeeEEccCCcC-----------CCCCCccccEEecCCCCCcc----cChhh-------hccccccEEecccccccc
Q 046764 589 FEFENLQTFLPTTVS-----------HGGDLKHLRHLDLSETDIQI----LPESV-------NTLYNLRMLMLQKCNQLE 646 (1113)
Q Consensus 589 ~~l~~Lr~L~~~~~~-----------~i~~L~~Lr~L~Ls~~~i~~----LP~~i-------~~L~~L~~LdL~~c~~l~ 646 (1113)
..+++|+.|.+.++. .+.++++|++|+|++|.+.. +|..+ ..+++|++|+|++|..-.
T Consensus 29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 345667777766654 35667777777777765442 34333 566777777777753222
Q ss_pred ----cccccccCCCcceEEEcCCceeccccccccccccccccccceeeccccCccChhhHHHhhcCCC---------ccc
Q 046764 647 ----KMCSDMGNLLKLHHLDNFDFCCWKDIDSALQELKLLHLHGALEISKLENVRDASEAGEAQLNGK---------KNL 713 (1113)
Q Consensus 647 ----~LP~~i~~L~~L~~L~L~~~~i~~~~~~~l~~L~L~~L~g~L~i~~l~~~~~~~~~~~~~l~~l---------~~L 713 (1113)
.+|..+.++++|++|++++|.+....+..+.. .+..+ ++|
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~---------------------------~l~~l~~~~~~~~~~~L 161 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR---------------------------ALQELAVNKKAKNAPPL 161 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH---------------------------HHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHH---------------------------HHHHHhhhhhcccCCCC
Confidence 26666677777777777776543222211111 11112 677
Q ss_pred ceEEeeecCCCCCCCCchhhHhhhccCCCCCCcceEEEeccCccccccCcccccccccCCCcccceEecCCCCCCCCCcc
Q 046764 714 KTLLLQRTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGETLRFENMQEREDWIPYSSSQEVEFYGNGCLIPFPSLE 793 (1113)
Q Consensus 714 ~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~L~~~~~~~~l~~L~~L~~~Lpl~~l~~~~~~g~~~l~~~~~L~ 793 (1113)
+.|++++|.... .........+..+++|+.|+++++..... .+..+ .| ..+..+++|+
T Consensus 162 ~~L~L~~n~l~~-----~~~~~l~~~l~~~~~L~~L~L~~n~l~~~--g~~~l---~~------------~~l~~~~~L~ 219 (386)
T 2ca6_A 162 RSIICGRNRLEN-----GSMKEWAKTFQSHRLLHTVKMVQNGIRPE--GIEHL---LL------------EGLAYCQELK 219 (386)
T ss_dssp CEEECCSSCCTG-----GGHHHHHHHHHHCTTCCEEECCSSCCCHH--HHHHH---HH------------TTGGGCTTCC
T ss_pred cEEECCCCCCCc-----HHHHHHHHHHHhCCCcCEEECcCCCCCHh--HHHHH---HH------------HHhhcCCCcc
Confidence 777777665210 11111223444566777777776532110 00000 00 1334566777
Q ss_pred eeeccccCcCcccccCCCCcccccCCCccEEEEecCcCcccc----cCC-----CCCCccEEEEecccCc-------ccc
Q 046764 794 TLRFENMQEREDWIPYSSSQEVEVFPNLRDLFLLRCSKLLGT----LPK-----HLPSLQKLVIQRCEKL-------LVD 857 (1113)
Q Consensus 794 ~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~----lp~-----~l~~L~~L~L~~c~~L-------~~~ 857 (1113)
.|+|+++.-- .......+..+..+++|+.|+|++| .+.+. +|. .+++|+.|++++|..- ...
T Consensus 220 ~L~Ls~n~l~-~~g~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~ 297 (386)
T 2ca6_A 220 VLDLQDNTFT-HLGSSALAIALKSWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV 297 (386)
T ss_dssp EEECCSSCCH-HHHHHHHHHHGGGCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHH
T ss_pred EEECcCCCCC-cHHHHHHHHHHccCCCcCEEECCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHH
Confidence 7777765421 0000001123446677888888777 44422 222 2567777777766321 122
Q ss_pred C-CCCCcccEEEEeccCCCC
Q 046764 858 L-PSLPSLNELKLGGCKKGG 876 (1113)
Q Consensus 858 l-~~l~~L~~L~L~~~~~~~ 876 (1113)
+ ..+++|+.|++++|+...
T Consensus 298 l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 298 IDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHHHCTTCCEEECTTSBSCT
T ss_pred HHhcCCCceEEEccCCcCCc
Confidence 2 236777777777776554
No 93
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.17 E-value=1.1e-10 Score=128.51 Aligned_cols=78 Identities=18% Similarity=0.173 Sum_probs=65.8
Q ss_pred CCeeEEccCCcC-------CCCCCccccEEecCCCCCcccC-hhhhccccccEEeccccccccccc-ccccCCCcceEEE
Q 046764 592 ENLQTFLPTTVS-------HGGDLKHLRHLDLSETDIQILP-ESVNTLYNLRMLMLQKCNQLEKMC-SDMGNLLKLHHLD 662 (1113)
Q Consensus 592 ~~Lr~L~~~~~~-------~i~~L~~Lr~L~Ls~~~i~~LP-~~i~~L~~L~~LdL~~c~~l~~LP-~~i~~L~~L~~L~ 662 (1113)
++++.|.+.++. .|.++++|++|+|++|.++.+| ..++++++|++|++++| .+..+| ..+.++++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEEE
Confidence 468888887765 6889999999999999999885 47999999999999996 455555 6789999999999
Q ss_pred cCCceecc
Q 046764 663 NFDFCCWK 670 (1113)
Q Consensus 663 L~~~~i~~ 670 (1113)
+++|.+..
T Consensus 107 l~~n~l~~ 114 (276)
T 2z62_A 107 AVETNLAS 114 (276)
T ss_dssp CTTSCCCC
T ss_pred CCCCCccc
Confidence 99886543
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.14 E-value=1.3e-10 Score=130.44 Aligned_cols=38 Identities=26% Similarity=0.206 Sum_probs=21.6
Q ss_pred CCCCCceEEEcccCCCcccccccCCCCCcccCCCCccEEEeecCC
Q 046764 917 LPLSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHILSCP 961 (1113)
Q Consensus 917 ~l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~c~ 961 (1113)
.+++|++|++++|. +..+ .|..+ ..+++|++|++++|.
T Consensus 143 ~~~~L~~L~Ls~n~-l~~~-----~~~~~-~~l~~L~~L~Ls~N~ 180 (310)
T 4glp_A 143 LKPGLKVLSIAQAH-SPAF-----SCEQV-RAFPALTSLDLSDNP 180 (310)
T ss_dssp BCSCCCEEEEECCS-SCCC-----CTTSC-CCCTTCCEEECCSCT
T ss_pred hccCCCEEEeeCCC-cchh-----hHHHh-ccCCCCCEEECCCCC
Confidence 46677777777665 3333 12223 256677777776664
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.12 E-value=3.7e-12 Score=147.79 Aligned_cols=117 Identities=15% Similarity=0.151 Sum_probs=66.3
Q ss_pred cccEEecCCCCCcccChhhhccccccEEeccccccccc----ccccccCCCcceEEEcCCceecc---cccccccccccc
Q 046764 610 HLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEK----MCSDMGNLLKLHHLDNFDFCCWK---DIDSALQELKLL 682 (1113)
Q Consensus 610 ~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~----LP~~i~~L~~L~~L~L~~~~i~~---~~~~~l~~L~L~ 682 (1113)
.|++..++...+..++..+..+++|++|+|++|..-.. ++..+.++++|++|++++|.+.. ..|..+
T Consensus 10 ~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~------ 83 (386)
T 2ca6_A 10 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL------ 83 (386)
T ss_dssp CCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHH------
T ss_pred ccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHH------
Confidence 44444455555566777788888888888887643222 44456678888888887763311 111111
Q ss_pred ccccceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCCCCCcceEEEeccC
Q 046764 683 HLHGALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYG 755 (1113)
Q Consensus 683 ~L~g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~L~~~~ 755 (1113)
......+..+++|+.|++++|..... ........+..+++|+.|+++++.
T Consensus 84 ------------------~~l~~~l~~~~~L~~L~Ls~n~l~~~-----~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 84 ------------------RLLLQALLKCPKLHTVRLSDNAFGPT-----AQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp ------------------HHHHHHHTTCTTCCEEECCSCCCCTT-----THHHHHHHHHHCTTCCEEECCSSC
T ss_pred ------------------HHHHHHHhhCCcccEEECCCCcCCHH-----HHHHHHHHHHhCCCCCEEECcCCC
Confidence 11123456677777887777652211 111233445556677777777654
No 96
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.10 E-value=6.6e-10 Score=122.05 Aligned_cols=170 Identities=18% Similarity=0.233 Sum_probs=82.8
Q ss_pred CCCCccEEEEecccCc-cccCCCCCcccEEEEeccCCCCcccCCCccccccccccCCCCCCcccccccCCCCC--cCccc
Q 046764 839 HLPSLQKLVIQRCEKL-LVDLPSLPSLNELKLGGCKKGGLQKGQPIIGRRIHYGCADTSSSLRVCLQCCNSLT--NNARV 915 (1113)
Q Consensus 839 ~l~~L~~L~L~~c~~L-~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~~l~~L~~L~~~~N~L~--~~~~l 915 (1113)
.+++|+.|.+.+|..- ...+..+++|++|++++|..... ..+..+++|++|++.+|.++ .+..+
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~-------------~~l~~l~~L~~L~L~~n~l~~~~~~~~ 105 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI-------------SALKELTNLTYLILTGNQLQSLPNGVF 105 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC-------------GGGTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc-------------hhhcCCCCCCEEECCCCccCccChhHh
Confidence 4567777777776421 11345577777777777765441 13445555555555555555 22234
Q ss_pred CCCCCCceEEEcccCCCcccccccCCCCCcccCCCCccEEEeecCCCCcccCCCCCcCCccCeEEEccccccccccccCC
Q 046764 916 QLPLSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHILSCPSPTSIFSENELPATLQRLEVNSCSKLALLTLSGN 995 (1113)
Q Consensus 916 ~~l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~c~~L~~ll~~~~l~~sL~~L~i~~c~~L~~l~l~~~ 995 (1113)
..+++|++|++++|. ++.+ +. ..+ ..+++|++|++++|. ++. ++...+ ..
T Consensus 106 ~~l~~L~~L~L~~n~-l~~~-~~----~~~-~~l~~L~~L~L~~n~-l~~-~~~~~~---------------------~~ 155 (272)
T 3rfs_A 106 DKLTNLKELVLVENQ-LQSL-PD----GVF-DKLTNLTYLNLAHNQ-LQS-LPKGVF---------------------DK 155 (272)
T ss_dssp TTCTTCCEEECTTSC-CCCC-CT----TTT-TTCTTCCEEECCSSC-CCC-CCTTTT---------------------TT
T ss_pred cCCcCCCEEECCCCc-CCcc-CH----HHh-ccCCCCCEEECCCCc-cCc-cCHHHh---------------------cc
Confidence 555555555555554 3322 11 111 244555555555442 222 111000 12
Q ss_pred CCCCCeEEEEecCCCccccCCC----CCCccEEEEeecCCCCcccccCCCCCCcCeeee-ccc
Q 046764 996 LPQGPKYLELTSCSKWESIADN----NTSLQVITVFRCKNLKTLPDGLHKLNNLQAFTI-CKN 1053 (1113)
Q Consensus 996 lp~~L~~L~L~~c~~L~~lp~~----l~sL~~L~Ls~c~~l~~lP~~l~~L~sL~~L~L-cn~ 1053 (1113)
++. |+.|++++| .++.++.. +++|+.|++++|......|..+..+++|+.|++ .|.
T Consensus 156 l~~-L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 156 LTN-LTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CTT-CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred Ccc-CCEEECCCC-CcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 222 555555554 34444332 566666666665432222334566666666666 443
No 97
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.08 E-value=1.4e-09 Score=117.89 Aligned_cols=58 Identities=16% Similarity=0.091 Sum_probs=44.3
Q ss_pred ccccEEecCCCCCcccChhhhccccccEEecccccccccccccccCCCcceEEEcCCcee
Q 046764 609 KHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNFDFCC 668 (1113)
Q Consensus 609 ~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~~~~i 668 (1113)
...++++++++.++.+|..+. .+|++|+|++|......|..++++++|++|++++|.+
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 71 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL 71 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcC
Confidence 356788999999999988776 5899999998543333345678889999999888744
No 98
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.07 E-value=1.9e-10 Score=129.08 Aligned_cols=55 Identities=24% Similarity=0.190 Sum_probs=30.4
Q ss_pred CCccEEEEecCcCcccccCCC-CCCccEEEEecccCcc-ccCCCCCcccEEEEeccCCC
Q 046764 819 PNLRDLFLLRCSKLLGTLPKH-LPSLQKLVIQRCEKLL-VDLPSLPSLNELKLGGCKKG 875 (1113)
Q Consensus 819 ~~L~~L~L~~c~~L~~~lp~~-l~~L~~L~L~~c~~L~-~~l~~l~~L~~L~L~~~~~~ 875 (1113)
++|++|++++| .++ .+|.. +++|+.|++++|.--. ..+..+++|+.|++++|+..
T Consensus 251 ~~L~~L~Ls~N-~l~-~lp~~~~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 251 SALNSLNLSFA-GLE-QVPKGLPAKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp TTCCCEECCSS-CCC-SCCSCCCSCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTTTS
T ss_pred CcCCEEECCCC-CCC-chhhhhcCCCCEEECCCCcCCCCchhhhCCCccEEECcCCCCC
Confidence 67777777776 565 55542 2456666666553211 12334566666666666543
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.05 E-value=4.5e-10 Score=124.69 Aligned_cols=61 Identities=20% Similarity=0.227 Sum_probs=41.9
Q ss_pred CCCCccccEEecCCCCCcccChhhhccccccEEecccccccccccccccCCCcceEEEcCCcee
Q 046764 605 GGDLKHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNFDFCC 668 (1113)
Q Consensus 605 i~~L~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~~~~i 668 (1113)
+.++++|++|++++|.+..+|. ++.+++|++|++++| .+..+|. ++++++|++|++++|.+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred hhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCcC
Confidence 3456677777777777777753 777777777777774 5555655 77777777777776643
No 100
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.04 E-value=5.8e-11 Score=136.39 Aligned_cols=64 Identities=13% Similarity=0.021 Sum_probs=38.8
Q ss_pred CCccccEEecCCCCCcccC-----hhhhccc-cccEEecccccccccccccccCC-----CcceEEEcCCceecc
Q 046764 607 DLKHLRHLDLSETDIQILP-----ESVNTLY-NLRMLMLQKCNQLEKMCSDMGNL-----LKLHHLDNFDFCCWK 670 (1113)
Q Consensus 607 ~L~~Lr~L~Ls~~~i~~LP-----~~i~~L~-~L~~LdL~~c~~l~~LP~~i~~L-----~~L~~L~L~~~~i~~ 670 (1113)
..++|++|+|++|.+...+ ..+..++ +|++|+|++|..-...+..+..+ ++|++|++++|.+..
T Consensus 20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 94 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSY 94 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCCh
Confidence 3445777777777776654 4566666 67777777753323334444444 677777777765543
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.99 E-value=1.8e-09 Score=119.91 Aligned_cols=78 Identities=18% Similarity=0.204 Sum_probs=66.5
Q ss_pred cCCCCCeeEEccCCcC-----CCCCCccccEEecCCCCCcccChhhhccccccEEecccccccccccccccCCCcceEEE
Q 046764 588 FFEFENLQTFLPTTVS-----HGGDLKHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLD 662 (1113)
Q Consensus 588 ~~~l~~Lr~L~~~~~~-----~i~~L~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~ 662 (1113)
...+++|+.|.+.++. .++.+++|++|+|++|.++.+|. ++++++|++|++++| .+..+|. ++++++|++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEE
T ss_pred hhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEE
Confidence 4456778888877654 57788999999999999999977 999999999999995 6777765 99999999999
Q ss_pred cCCcee
Q 046764 663 NFDFCC 668 (1113)
Q Consensus 663 L~~~~i 668 (1113)
+++|.+
T Consensus 119 L~~n~i 124 (291)
T 1h6t_A 119 LEHNGI 124 (291)
T ss_dssp CTTSCC
T ss_pred CCCCcC
Confidence 998854
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.99 E-value=6.9e-10 Score=135.49 Aligned_cols=57 Identities=21% Similarity=0.261 Sum_probs=27.9
Q ss_pred CCccccEEecCCCCCcccChhhhccccccEEecccccccccccccccCCCcceEEEcCCc
Q 046764 607 DLKHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNFDF 666 (1113)
Q Consensus 607 ~L~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~~~ 666 (1113)
.|.+|++|+|++|.+..+| .++.|++|++|+|++| .+..+|. +..|++|++|++++|
T Consensus 41 ~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSS
T ss_pred cCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCC
Confidence 3444555555555555544 3555555555555543 3334433 455555555555544
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.96 E-value=2.6e-09 Score=130.34 Aligned_cols=79 Identities=16% Similarity=0.188 Sum_probs=65.9
Q ss_pred cCCCCCeeEEccCCcC-----CCCCCccccEEecCCCCCcccChhhhccccccEEecccccccccccccccCCCcceEEE
Q 046764 588 FFEFENLQTFLPTTVS-----HGGDLKHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLD 662 (1113)
Q Consensus 588 ~~~l~~Lr~L~~~~~~-----~i~~L~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~ 662 (1113)
+..+++|+.|.+.++. .++.+++|++|+|++|.+..+|. ++.|++|++|+|++| .+..+| .+..+++|++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEE
T ss_pred hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEE
Confidence 3456667777766554 67889999999999999999977 999999999999995 677776 699999999999
Q ss_pred cCCceec
Q 046764 663 NFDFCCW 669 (1113)
Q Consensus 663 L~~~~i~ 669 (1113)
+++|.+.
T Consensus 116 Ls~N~l~ 122 (605)
T 1m9s_A 116 LEHNGIS 122 (605)
T ss_dssp CTTSCCC
T ss_pred ecCCCCC
Confidence 9998653
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.96 E-value=1.1e-09 Score=113.85 Aligned_cols=151 Identities=17% Similarity=0.258 Sum_probs=94.0
Q ss_pred CCCccccEEecCCCCCcccChhhhccccccEEecccccccccccccccCCCcceEEEcCCceeccccccccccccccccc
Q 046764 606 GDLKHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNFDFCCWKDIDSALQELKLLHLH 685 (1113)
Q Consensus 606 ~~L~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~~~~i~~~~~~~l~~L~L~~L~ 685 (1113)
+++++|++|++++|.+..+| .+..+++|++|++++| .+..+| .+..+++|++|++++|.+....+..
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~---------- 107 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPN---------- 107 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCC----------
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChh----------
Confidence 45778888899999888888 6888999999999886 555554 6888899999998887554333332
Q ss_pred cceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCCCCCcceEEEeccCccccccCccc
Q 046764 686 GALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGETLRFENMQE 765 (1113)
Q Consensus 686 g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~L~~~~~~~~l~~L~~ 765 (1113)
+..+++|+.|+++.|... ...+..+..+++|+.|+++++.....+
T Consensus 108 ---------------------l~~l~~L~~L~Ls~n~i~---------~~~~~~l~~l~~L~~L~L~~n~~i~~~----- 152 (197)
T 4ezg_A 108 ---------------------LSGLTSLTLLDISHSAHD---------DSILTKINTLPKVNSIDLSYNGAITDI----- 152 (197)
T ss_dssp ---------------------CTTCTTCCEEECCSSBCB---------GGGHHHHTTCSSCCEEECCSCTBCCCC-----
T ss_pred ---------------------hcCCCCCCEEEecCCccC---------cHhHHHHhhCCCCCEEEccCCCCcccc-----
Confidence 333445555555544311 012333444555666665554311100
Q ss_pred ccccccCCCcccceEecCCCCCCCCCcceeeccccCcCcccccCCCCcccccCCCccEEEEecC
Q 046764 766 REDWIPYSSSQEVEFYGNGCLIPFPSLETLRFENMQEREDWIPYSSSQEVEVFPNLRDLFLLRC 829 (1113)
Q Consensus 766 L~~~Lpl~~l~~~~~~g~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c 829 (1113)
+.+..+++|+.|+++++. +..+. ....+++|+.|+++++
T Consensus 153 ------------------~~l~~l~~L~~L~l~~n~-i~~~~------~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 153 ------------------MPLKTLPELKSLNIQFDG-VHDYR------GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp ------------------GGGGGCSSCCEEECTTBC-CCCCT------TGGGCSSCCEEEECBC
T ss_pred ------------------HhhcCCCCCCEEECCCCC-CcChH------HhccCCCCCEEEeeCc
Confidence 123446677777777654 22221 3457888888888887
No 105
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.95 E-value=2.7e-10 Score=130.77 Aligned_cols=231 Identities=13% Similarity=-0.003 Sum_probs=121.9
Q ss_pred EEecCCCCCccc-ChhhhccccccEEeccccccccccc-----ccccCCC-cceEEEcCCceeccccccccccc-----c
Q 046764 613 HLDLSETDIQIL-PESVNTLYNLRMLMLQKCNQLEKMC-----SDMGNLL-KLHHLDNFDFCCWKDIDSALQEL-----K 680 (1113)
Q Consensus 613 ~L~Ls~~~i~~L-P~~i~~L~~L~~LdL~~c~~l~~LP-----~~i~~L~-~L~~L~L~~~~i~~~~~~~l~~L-----~ 680 (1113)
+++|++|+++.. |..+...++|++|+|++| .+...+ ..+.+++ +|++|++++|.+....+..+..+ .
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 578999999865 666666777999999996 466655 5678888 99999999998766555555443 3
Q ss_pred -ccccccceeeccccCccChhhHHHhhcCCC-cccceEEeeecCCCCCCCCchhhHhhhccCCC-CCCcceEEEeccCcc
Q 046764 681 -LLHLHGALEISKLENVRDASEAGEAQLNGK-KNLKTLLLQRTSNNGDSREPEIETHVLDMLKP-HQNLERFCISGYGET 757 (1113)
Q Consensus 681 -L~~L~g~L~i~~l~~~~~~~~~~~~~l~~l-~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~-~~~L~~L~L~~~~~~ 757 (1113)
|+.|. +.-+.+.. .........+..+ ++|+.|++++|...+. ........+.. +++|+.|+++++...
T Consensus 81 ~L~~L~--Ls~n~l~~--~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-----~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 81 NVTSLN--LSGNFLSY--KSSDELVKTLAAIPFTITVLDLGWNDFSSK-----SSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp TCCEEE--CCSSCGGG--SCHHHHHHHHHTSCTTCCEEECCSSCGGGS-----CHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred CccEEE--CcCCcCCh--HHHHHHHHHHHhCCCCccEEECcCCcCCcH-----HHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 33332 11111111 1112222334444 6788888877752111 11112223344 357777777765422
Q ss_pred ccccCcccccccccCCCcccceEecCCCCCCCC-CcceeeccccCcCcccccCCCCcccccC-CCccEEEEecCcCccc-
Q 046764 758 LRFENMQEREDWIPYSSSQEVEFYGNGCLIPFP-SLETLRFENMQEREDWIPYSSSQEVEVF-PNLRDLFLLRCSKLLG- 834 (1113)
Q Consensus 758 ~~l~~L~~L~~~Lpl~~l~~~~~~g~~~l~~~~-~L~~L~L~~~~~l~~~~~~~~~~~~~~~-~~L~~L~L~~c~~L~~- 834 (1113)
. .....+. ..+..++ +|+.|+++++.- ..............+ ++|+.|++++| .+.+
T Consensus 152 ~--~~~~~l~----------------~~l~~~~~~L~~L~Ls~n~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~ 211 (362)
T 3goz_A 152 I--KSSDELI----------------QILAAIPANVNSLNLRGNNL-ASKNCAELAKFLASIPASVTSLDLSAN-LLGLK 211 (362)
T ss_dssp G--SCHHHHH----------------HHHHTSCTTCCEEECTTSCG-GGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGS
T ss_pred H--HHHHHHH----------------HHHhcCCccccEeeecCCCC-chhhHHHHHHHHHhCCCCCCEEECCCC-CCChh
Confidence 1 0000000 1111233 677777776532 111100000112234 37777777777 4542
Q ss_pred ---ccCC----CCCCccEEEEecccCcc-------ccCCCCCcccEEEEeccC
Q 046764 835 ---TLPK----HLPSLQKLVIQRCEKLL-------VDLPSLPSLNELKLGGCK 873 (1113)
Q Consensus 835 ---~lp~----~l~~L~~L~L~~c~~L~-------~~l~~l~~L~~L~L~~~~ 873 (1113)
.++. ..++|++|++++|.--. ..+..+++|+.|++++|.
T Consensus 212 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 212 SYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 1222 12467777776663211 123445667777776665
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.94 E-value=4.2e-09 Score=127.15 Aligned_cols=53 Identities=19% Similarity=0.250 Sum_probs=44.0
Q ss_pred cccEEecCCCCCcccChhhhccccccEEecccccccccccccccCCCcceEEEcCCcee
Q 046764 610 HLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNFDFCC 668 (1113)
Q Consensus 610 ~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~~~~i 668 (1113)
+|++|+|++|+++.+|..+. ++|++|+|++| .+..+| +.+++|++|++++|.+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N~l 112 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQN-ALISLP---ELPASLEYLDACDNRL 112 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSCC
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCC-CCcccc---cccCCCCEEEccCCCC
Confidence 78899999999999988774 78999999984 677888 4578999999988744
No 107
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.92 E-value=1.1e-08 Score=110.82 Aligned_cols=55 Identities=16% Similarity=0.109 Sum_probs=27.8
Q ss_pred CCccEEEEecCcCcccccCCCC-CCccEEEEecccCc--c-ccCCCCCcccEEEEeccCCC
Q 046764 819 PNLRDLFLLRCSKLLGTLPKHL-PSLQKLVIQRCEKL--L-VDLPSLPSLNELKLGGCKKG 875 (1113)
Q Consensus 819 ~~L~~L~L~~c~~L~~~lp~~l-~~L~~L~L~~c~~L--~-~~l~~l~~L~~L~L~~~~~~ 875 (1113)
+..+.++++++ .++ .+|..+ ++|+.|++++|..- . ..+..+++|++|++++|...
T Consensus 14 ~~~~~l~~~~~-~l~-~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 72 (251)
T 3m19_A 14 EGKKEVDCQGK-SLD-SVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ 72 (251)
T ss_dssp GGGTEEECTTC-CCS-SCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred CCCeEEecCCC-Ccc-ccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC
Confidence 34667777776 565 565432 35555555555311 1 12333455555555555443
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.88 E-value=7.5e-09 Score=124.93 Aligned_cols=31 Identities=26% Similarity=0.299 Sum_probs=17.5
Q ss_pred CCccEEEEecCcCcccccCCCCCCccEEEEecc
Q 046764 819 PNLRDLFLLRCSKLLGTLPKHLPSLQKLVIQRC 851 (1113)
Q Consensus 819 ~~L~~L~L~~c~~L~~~lp~~l~~L~~L~L~~c 851 (1113)
++|+.|++++| +++ .+|..+++|+.|++++|
T Consensus 80 ~~L~~L~Ls~N-~l~-~ip~~l~~L~~L~Ls~N 110 (571)
T 3cvr_A 80 PQITVLEITQN-ALI-SLPELPASLEYLDACDN 110 (571)
T ss_dssp TTCSEEECCSS-CCS-CCCCCCTTCCEEECCSS
T ss_pred CCCCEEECcCC-CCc-ccccccCCCCEEEccCC
Confidence 55666666665 454 45544555555555555
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.88 E-value=2e-09 Score=112.08 Aligned_cols=146 Identities=14% Similarity=0.135 Sum_probs=103.9
Q ss_pred CCCCCeeEEccCCcC-----CCCCCccccEEecCCCCCcccChhhhccccccEEecccccccccccccccCCCcceEEEc
Q 046764 589 FEFENLQTFLPTTVS-----HGGDLKHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDN 663 (1113)
Q Consensus 589 ~~l~~Lr~L~~~~~~-----~i~~L~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L 663 (1113)
..+++|+.|.+.++. .+..+++|++|++++|.+..++ .++.+++|++|++++|......|..++++++|++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 345667777665543 5677889999999999877665 6888999999999986544457888999999999999
Q ss_pred CCceecccccccccccc-ccccccceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCC
Q 046764 664 FDFCCWKDIDSALQELK-LLHLHGALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKP 742 (1113)
Q Consensus 664 ~~~~i~~~~~~~l~~L~-L~~L~g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~ 742 (1113)
++|.+....+..+..+. |..|. +.-+. .+... ..+..+++|+.|+++.|...+ +..+..
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~--L~~n~--~i~~~-----~~l~~l~~L~~L~l~~n~i~~-----------~~~l~~ 179 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSID--LSYNG--AITDI-----MPLKTLPELKSLNIQFDGVHD-----------YRGIED 179 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEE--CCSCT--BCCCC-----GGGGGCSSCCEEECTTBCCCC-----------CTTGGG
T ss_pred cCCccCcHhHHHHhhCCCCCEEE--ccCCC--Ccccc-----HhhcCCCCCCEEECCCCCCcC-----------hHHhcc
Confidence 99987666666666666 66554 22221 11111 147788999999998876322 224566
Q ss_pred CCCcceEEEeccC
Q 046764 743 HQNLERFCISGYG 755 (1113)
Q Consensus 743 ~~~L~~L~L~~~~ 755 (1113)
+++|+.|+++++.
T Consensus 180 l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 180 FPKLNQLYAFSQT 192 (197)
T ss_dssp CSSCCEEEECBC-
T ss_pred CCCCCEEEeeCcc
Confidence 7899999998854
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.88 E-value=4.7e-11 Score=144.85 Aligned_cols=39 Identities=15% Similarity=0.113 Sum_probs=32.2
Q ss_pred CCCCccccEEecCCCCCcccChhhhccccccEEeccccc
Q 046764 605 GGDLKHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCN 643 (1113)
Q Consensus 605 i~~L~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~ 643 (1113)
+..+++|+.|+|++|+++.+|++|++|++|+.|++++|.
T Consensus 345 ~~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~ 383 (567)
T 1dce_A 345 SATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKW 383 (567)
T ss_dssp CSTTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred cccCccceeccCChhhHHhhHHHHHHHHHHHHhccccch
Confidence 456788888888888888888888888888888887653
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.76 E-value=7.2e-09 Score=113.08 Aligned_cols=61 Identities=21% Similarity=0.291 Sum_probs=40.7
Q ss_pred CCCCccccEEecCCCCCcccChhhhccccccEEecccccccccccccccCCCcceEEEcCCcee
Q 046764 605 GGDLKHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNFDFCC 668 (1113)
Q Consensus 605 i~~L~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~~~~i 668 (1113)
+.++++|++|++++|.++.+| .++.+++|++|+|++| .+..+|. ++++++|++|++++|.+
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N~l 97 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRNRL 97 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSSCC
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCCcc
Confidence 455667777777777777666 5667777777777763 5566655 66777777777776643
No 112
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.72 E-value=4.1e-08 Score=102.90 Aligned_cols=60 Identities=30% Similarity=0.307 Sum_probs=27.2
Q ss_pred CCCCcccEEEEeccCCCCcccCCCccccccccccCCCCCCcccccccCCCCC--cCcccCCCCCCceEEEccc
Q 046764 859 PSLPSLNELKLGGCKKGGLQKGQPIIGRRIHYGCADTSSSLRVCLQCCNSLT--NNARVQLPLSLKDLSIAFC 929 (1113)
Q Consensus 859 ~~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~~l~~L~~L~~~~N~L~--~~~~l~~l~~L~~L~Ls~c 929 (1113)
..+++|++|++++|...... ...+..+++|++|++.+|.++ ....+..+++|+.|++++|
T Consensus 49 ~~l~~L~~L~l~~n~l~~~~-----------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 110 (208)
T 2o6s_A 49 DELTSLTQLYLGGNKLQSLP-----------NGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110 (208)
T ss_dssp TTCTTCSEEECCSSCCCCCC-----------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cccccCcEEECCCCccCccC-----------hhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCC
Confidence 34555666666655544321 123334444444444444444 2222344555555555554
No 113
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.71 E-value=5.7e-08 Score=101.78 Aligned_cols=129 Identities=18% Similarity=0.204 Sum_probs=69.0
Q ss_pred ccccEEecCCCCCcccCh-hhhccccccEEeccccccccccccc-ccCCCcceEEEcCCceecccccccccccc-ccccc
Q 046764 609 KHLRHLDLSETDIQILPE-SVNTLYNLRMLMLQKCNQLEKMCSD-MGNLLKLHHLDNFDFCCWKDIDSALQELK-LLHLH 685 (1113)
Q Consensus 609 ~~Lr~L~Ls~~~i~~LP~-~i~~L~~L~~LdL~~c~~l~~LP~~-i~~L~~L~~L~L~~~~i~~~~~~~l~~L~-L~~L~ 685 (1113)
.+|++|+|++|+++.+|. .++.+++|++|++++| .+..+|.. +.++++|++|++++|.+....+..+..+. |..|.
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 456666666666665543 3456666666666653 44455443 35566666666666655433333334444 44333
Q ss_pred cceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCCCCCcceEEEeccC
Q 046764 686 GALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYG 755 (1113)
Q Consensus 686 g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~L~~~~ 755 (1113)
+.-+.+... ....+..+++|+.|+++.|...+. ....+..+++|+.|+++++.
T Consensus 107 --L~~N~l~~~------~~~~~~~l~~L~~L~l~~N~l~~~---------~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 107 --LNTNQLQSL------PDGVFDKLTQLKDLRLYQNQLKSV---------PDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp --CCSSCCCCC------CTTTTTTCTTCCEEECCSSCCSCC---------CTTTTTTCTTCCEEECCSCC
T ss_pred --cCCCcCccc------CHhHhccCCcCCEEECCCCcccee---------CHHHhccCCCccEEEecCCC
Confidence 211222211 112356778888888877753221 11235567788888888764
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.71 E-value=3.6e-08 Score=107.47 Aligned_cols=144 Identities=19% Similarity=0.161 Sum_probs=107.0
Q ss_pred ccccCCCCCeeEEccCCcC-----CCCCCccccEEecCCCCCcccChhhhccccccEEecccccccccccccccCCCcce
Q 046764 585 FEPFFEFENLQTFLPTTVS-----HGGDLKHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLH 659 (1113)
Q Consensus 585 ~~~~~~l~~Lr~L~~~~~~-----~i~~L~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~ 659 (1113)
+..+..+++|+.|.+.++. .++.+++|++|+|++|.++.+|. ++++++|++|++++| .+..+|.... .+|+
T Consensus 34 ~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~~~--~~L~ 109 (263)
T 1xeu_A 34 LVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN-RLKNLNGIPS--ACLS 109 (263)
T ss_dssp EECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS-CCSCCTTCCC--SSCC
T ss_pred ccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC-ccCCcCcccc--Cccc
Confidence 3355677888888887765 67789999999999999999987 999999999999995 6777876434 9999
Q ss_pred EEEcCCceecccccccccccc-ccccccceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhc
Q 046764 660 HLDNFDFCCWKDIDSALQELK-LLHLHGALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLD 738 (1113)
Q Consensus 660 ~L~L~~~~i~~~~~~~l~~L~-L~~L~g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~ 738 (1113)
+|++++|.+... ..+..+. |+.|. +.-+.+..+ ..+..+++|+.|+++.|...+. .
T Consensus 110 ~L~L~~N~l~~~--~~l~~l~~L~~L~--Ls~N~i~~~--------~~l~~l~~L~~L~L~~N~i~~~-----------~ 166 (263)
T 1xeu_A 110 RLFLDNNELRDT--DSLIHLKNLEILS--IRNNKLKSI--------VMLGFLSKLEVLDLHGNEITNT-----------G 166 (263)
T ss_dssp EEECCSSCCSBS--GGGTTCTTCCEEE--CTTSCCCBC--------GGGGGCTTCCEEECTTSCCCBC-----------T
T ss_pred EEEccCCccCCC--hhhcCcccccEEE--CCCCcCCCC--------hHHccCCCCCEEECCCCcCcch-----------H
Confidence 999999977542 2355555 55443 222222222 1477889999999988763221 5
Q ss_pred cCCCCCCcceEEEeccC
Q 046764 739 MLKPHQNLERFCISGYG 755 (1113)
Q Consensus 739 ~L~~~~~L~~L~L~~~~ 755 (1113)
.+..+++|+.|+++++.
T Consensus 167 ~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 167 GLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TSTTCCCCCEEEEEEEE
T ss_pred HhccCCCCCEEeCCCCc
Confidence 57778899999999864
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.69 E-value=3.7e-08 Score=104.33 Aligned_cols=123 Identities=19% Similarity=0.172 Sum_probs=68.2
Q ss_pred CCeeEEccCCcC-------CCCCCccccEEecCCCCCccc-ChhhhccccccEEeccccccccccccc-ccCCCcceEEE
Q 046764 592 ENLQTFLPTTVS-------HGGDLKHLRHLDLSETDIQIL-PESVNTLYNLRMLMLQKCNQLEKMCSD-MGNLLKLHHLD 662 (1113)
Q Consensus 592 ~~Lr~L~~~~~~-------~i~~L~~Lr~L~Ls~~~i~~L-P~~i~~L~~L~~LdL~~c~~l~~LP~~-i~~L~~L~~L~ 662 (1113)
++++.|.+.++. .|..+++|++|+|++|.|+.+ |..|.++++|++|+|++ +.+..+|.. +.++++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG-NKITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS-SCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC-CcCCccCHhHccCCCCCCEEE
Confidence 345555555443 455666666666666666655 55666666666666666 345555544 35666666666
Q ss_pred cCCceeccccccccccccccccccceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCC
Q 046764 663 NFDFCCWKDIDSALQELKLLHLHGALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKP 742 (1113)
Q Consensus 663 L~~~~i~~~~~~~l~~L~L~~L~g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~ 742 (1113)
+++|.+....+. .+..+++|+.|+++.|..... ....+..
T Consensus 111 L~~N~l~~~~~~-------------------------------~~~~l~~L~~L~L~~N~l~~~---------~~~~~~~ 150 (220)
T 2v9t_B 111 LNANKINCLRVD-------------------------------AFQDLHNLNLLSLYDNKLQTI---------AKGTFSP 150 (220)
T ss_dssp CCSSCCCCCCTT-------------------------------TTTTCTTCCEEECCSSCCSCC---------CTTTTTT
T ss_pred CCCCCCCEeCHH-------------------------------HcCCCCCCCEEECCCCcCCEE---------CHHHHhC
Confidence 666544332222 345556666666666553221 1123445
Q ss_pred CCCcceEEEeccC
Q 046764 743 HQNLERFCISGYG 755 (1113)
Q Consensus 743 ~~~L~~L~L~~~~ 755 (1113)
+++|+.|+++++.
T Consensus 151 l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 151 LRAIQTMHLAQNP 163 (220)
T ss_dssp CTTCCEEECCSSC
T ss_pred CCCCCEEEeCCCC
Confidence 5666666666644
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.65 E-value=5.5e-08 Score=102.95 Aligned_cols=109 Identities=17% Similarity=0.241 Sum_probs=75.5
Q ss_pred ccccEEecCCCCCcccCh-hhhccccccEEecccccccccc-cccccCCCcceEEEcCCceecccccccccccccccccc
Q 046764 609 KHLRHLDLSETDIQILPE-SVNTLYNLRMLMLQKCNQLEKM-CSDMGNLLKLHHLDNFDFCCWKDIDSALQELKLLHLHG 686 (1113)
Q Consensus 609 ~~Lr~L~Ls~~~i~~LP~-~i~~L~~L~~LdL~~c~~l~~L-P~~i~~L~~L~~L~L~~~~i~~~~~~~l~~L~L~~L~g 686 (1113)
.+|+.|+|++|.|+.+|. .+..+++|++|+|++| .+..+ |..+.++++|++|++++|.+..
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~---------------- 94 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNKITE---------------- 94 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSCCCC----------------
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCcCCc----------------
Confidence 467888888888877754 6777888888888875 34444 6677788888888887764421
Q ss_pred ceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCCCCCcceEEEeccCccc
Q 046764 687 ALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGETL 758 (1113)
Q Consensus 687 ~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~L~~~~~~~ 758 (1113)
+. ...+.++++|+.|+++.|..... ....+..+++|+.|+++++....
T Consensus 95 ---------l~------~~~f~~l~~L~~L~L~~N~l~~~---------~~~~~~~l~~L~~L~L~~N~l~~ 142 (220)
T 2v9t_B 95 ---------LP------KSLFEGLFSLQLLLLNANKINCL---------RVDAFQDLHNLNLLSLYDNKLQT 142 (220)
T ss_dssp ---------CC------TTTTTTCTTCCEEECCSSCCCCC---------CTTTTTTCTTCCEEECCSSCCSC
T ss_pred ---------cC------HhHccCCCCCCEEECCCCCCCEe---------CHHHcCCCCCCCEEECCCCcCCE
Confidence 10 11356788999999988864322 23456778999999999876443
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.65 E-value=3e-08 Score=100.06 Aligned_cols=135 Identities=21% Similarity=0.180 Sum_probs=86.2
Q ss_pred CCccccEEecCCCCCc--ccChhhhccccccEEecccccccccccccccCCCcceEEEcCCceecccccccccccc-ccc
Q 046764 607 DLKHLRHLDLSETDIQ--ILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNFDFCCWKDIDSALQELK-LLH 683 (1113)
Q Consensus 607 ~L~~Lr~L~Ls~~~i~--~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~~~~i~~~~~~~l~~L~-L~~ 683 (1113)
..++|++|+|++|.+. .+|..++.+++|++|++++| .+..+ ..++.+++|++|++++|.+....|..+..+. |+.
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3467788888888887 77777788888888888875 45666 6677888888888888876554555555555 554
Q ss_pred cccceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCCCCCcceEEEeccCc
Q 046764 684 LHGALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGE 756 (1113)
Q Consensus 684 L~g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~L~~~~~ 756 (1113)
|. +.-+.+..+. ....+..+++|+.|+++.|..... .......+..+++|+.|++.++..
T Consensus 100 L~--Ls~N~l~~~~-----~~~~l~~l~~L~~L~l~~N~l~~~------~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 100 LN--LSGNKLKDIS-----TLEPLKKLECLKSLDLFNCEVTNL------NDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp EE--CBSSSCCSSG-----GGGGGSSCSCCCEEECCSSGGGTS------TTHHHHHHTTCSSCCEETTEETTS
T ss_pred Ee--ccCCccCcch-----hHHHHhcCCCCCEEEeeCCcCcch------HHHHHHHHHhCccCcEecCCCCCh
Confidence 43 2222222221 113577888899999887752211 000112456678888888887653
No 118
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.59 E-value=3e-08 Score=97.83 Aligned_cols=107 Identities=21% Similarity=0.236 Sum_probs=66.6
Q ss_pred CCccccEEecCCCCCc--ccChhhhccccccEEecccccccccccccccCCCcceEEEcCCceecccccccccccc-ccc
Q 046764 607 DLKHLRHLDLSETDIQ--ILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNFDFCCWKDIDSALQELK-LLH 683 (1113)
Q Consensus 607 ~L~~Lr~L~Ls~~~i~--~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~~~~i~~~~~~~l~~L~-L~~ 683 (1113)
..++|+.|++++|.++ .+|..++.+++|++|++++| .+..+ ..++++++|++|++++|.+....|..+..+. |..
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3466777778777777 67777777778888888774 55555 5677777788888877766554454444444 444
Q ss_pred cccceeeccccCccChhhHHHhhcCCCcccceEEeeecC
Q 046764 684 LHGALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTS 722 (1113)
Q Consensus 684 L~g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 722 (1113)
|. +.-+.+... .....+..+++|+.|++++|.
T Consensus 93 L~--ls~N~i~~~-----~~~~~~~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 93 LN--LSGNKIKDL-----STIEPLKKLENLKSLDLFNCE 124 (149)
T ss_dssp EE--CTTSCCCSH-----HHHGGGGGCTTCCEEECTTCG
T ss_pred EE--CCCCcCCCh-----HHHHHHhhCCCCCEEeCcCCc
Confidence 43 111111110 112356777788888887665
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.59 E-value=1.2e-07 Score=101.11 Aligned_cols=128 Identities=20% Similarity=0.179 Sum_probs=71.2
Q ss_pred ccccEEecCCCCCccc-ChhhhccccccEEeccccccccccccc-ccCCCcceEEEcCCceecccccccccccc-ccccc
Q 046764 609 KHLRHLDLSETDIQIL-PESVNTLYNLRMLMLQKCNQLEKMCSD-MGNLLKLHHLDNFDFCCWKDIDSALQELK-LLHLH 685 (1113)
Q Consensus 609 ~~Lr~L~Ls~~~i~~L-P~~i~~L~~L~~LdL~~c~~l~~LP~~-i~~L~~L~~L~L~~~~i~~~~~~~l~~L~-L~~L~ 685 (1113)
++|++|+|++|.++.+ |..++.+++|++|+|++| .+..+|.. +..+++|++|++++|.+....+..+..+. |..|.
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 5566666666666655 455666666666666663 44555533 35666666666666655443333344444 44433
Q ss_pred cceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCCCCCcceEEEeccC
Q 046764 686 GALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYG 755 (1113)
Q Consensus 686 g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~L~~~~ 755 (1113)
+.-+.+..+ +..+..+++|+.|+++.|..... ....+..+++|+.|++.++.
T Consensus 119 --Ls~N~l~~l-------p~~~~~l~~L~~L~L~~N~l~~~---------~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 119 --MCCNKLTEL-------PRGIERLTHLTHLALDQNQLKSI---------PHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp --CCSSCCCSC-------CTTGGGCTTCSEEECCSSCCCCC---------CTTTTTTCTTCCEEECTTSC
T ss_pred --ccCCccccc-------CcccccCCCCCEEECCCCcCCcc---------CHHHHhCCCCCCEEEeeCCC
Confidence 222222211 12356677888888877753211 11345567788888888754
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.58 E-value=8.1e-08 Score=101.68 Aligned_cols=129 Identities=12% Similarity=0.115 Sum_probs=64.7
Q ss_pred cccEEecCCCCCcccC--hhhhccccccEEecccccccccccc-cccCCCcceEEEcCCceecccccccccccc-ccccc
Q 046764 610 HLRHLDLSETDIQILP--ESVNTLYNLRMLMLQKCNQLEKMCS-DMGNLLKLHHLDNFDFCCWKDIDSALQELK-LLHLH 685 (1113)
Q Consensus 610 ~Lr~L~Ls~~~i~~LP--~~i~~L~~L~~LdL~~c~~l~~LP~-~i~~L~~L~~L~L~~~~i~~~~~~~l~~L~-L~~L~ 685 (1113)
.+++|+|++|.++.++ ..++.+++|++|+|++| .+..+|. .++++++|++|++++|.+....+..+..+. |..|.
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 3455555555555552 22555555555555553 3444433 455555555555555555444444444444 44333
Q ss_pred cceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCCCCCcceEEEeccCc
Q 046764 686 GALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGE 756 (1113)
Q Consensus 686 g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~L~~~~~ 756 (1113)
+.-+.+... .+..+..+++|+.|+++.|...+. ....+..+++|+.|+++++..
T Consensus 112 --Ls~N~l~~~------~~~~~~~l~~L~~L~L~~N~l~~~---------~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 112 --LRSNRITCV------GNDSFIGLSSVRLLSLYDNQITTV---------APGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp --CTTSCCCCB------CTTSSTTCTTCSEEECTTSCCCCB---------CTTTTTTCTTCCEEECCSCCE
T ss_pred --CCCCcCCeE------CHhHcCCCccCCEEECCCCcCCEE---------CHHHhcCCCCCCEEEecCcCC
Confidence 111112111 122355667777777766653221 234455667777777776543
No 121
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.56 E-value=1.2e-07 Score=100.30 Aligned_cols=122 Identities=16% Similarity=0.113 Sum_probs=92.3
Q ss_pred CCeeEEccCCcC--------CCCCCccccEEecCCCCCcccCh-hhhccccccEEecccccccccccc-cccCCCcceEE
Q 046764 592 ENLQTFLPTTVS--------HGGDLKHLRHLDLSETDIQILPE-SVNTLYNLRMLMLQKCNQLEKMCS-DMGNLLKLHHL 661 (1113)
Q Consensus 592 ~~Lr~L~~~~~~--------~i~~L~~Lr~L~Ls~~~i~~LP~-~i~~L~~L~~LdL~~c~~l~~LP~-~i~~L~~L~~L 661 (1113)
+.++.|.+.++. .|+++++|++|+|++|.|+.+|. .|+++++|++|+|++| .+..+|. .++++++|++|
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN-RLENVQHKMFKGLESLKTL 110 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCGGGGTTCSSCCEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC-ccCccCHhHhcCCcCCCEE
Confidence 345677776654 37789999999999999998854 7999999999999985 5566654 47899999999
Q ss_pred EcCCceecccccccccccc-ccccccceeeccccCccChhhHHHhhcCCCcccceEEeeecC
Q 046764 662 DNFDFCCWKDIDSALQELK-LLHLHGALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTS 722 (1113)
Q Consensus 662 ~L~~~~i~~~~~~~l~~L~-L~~L~g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 722 (1113)
++++|.+....+..+..+. |..|. +.-+.+... .+..+..+++|+.|+++.|.
T Consensus 111 ~Ls~N~l~~~~~~~~~~l~~L~~L~--L~~N~l~~~------~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 111 MLRSNRITCVGNDSFIGLSSVRLLS--LYDNQITTV------APGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp ECTTSCCCCBCTTSSTTCTTCSEEE--CTTSCCCCB------CTTTTTTCTTCCEEECCSCC
T ss_pred ECCCCcCCeECHhHcCCCccCCEEE--CCCCcCCEE------CHHHhcCCCCCCEEEecCcC
Confidence 9999988776677777777 66654 322333222 23457788999999998876
No 122
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.52 E-value=2e-07 Score=99.23 Aligned_cols=122 Identities=21% Similarity=0.230 Sum_probs=95.4
Q ss_pred CCCeeEEccCCcC-------CCCCCccccEEecCCCCCcccCh-hhhccccccEEeccccccccccccc-ccCCCcceEE
Q 046764 591 FENLQTFLPTTVS-------HGGDLKHLRHLDLSETDIQILPE-SVNTLYNLRMLMLQKCNQLEKMCSD-MGNLLKLHHL 661 (1113)
Q Consensus 591 l~~Lr~L~~~~~~-------~i~~L~~Lr~L~Ls~~~i~~LP~-~i~~L~~L~~LdL~~c~~l~~LP~~-i~~L~~L~~L 661 (1113)
.++|+.|.+.++. .|..+++|++|+|++|.+..+|. .+..+++|++|+|++| .+..+|.. +..+++|++|
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKEL 117 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeE
Confidence 3788899887765 58899999999999999999974 5699999999999995 67777765 5899999999
Q ss_pred EcCCceecccccccccccc-ccccccceeeccccCccChhhHHHhhcCCCcccceEEeeecC
Q 046764 662 DNFDFCCWKDIDSALQELK-LLHLHGALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTS 722 (1113)
Q Consensus 662 ~L~~~~i~~~~~~~l~~L~-L~~L~g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 722 (1113)
++++|.+. ..|..+..+. |..|. +.-+.+..+. ...+..+++|+.|+++.|.
T Consensus 118 ~Ls~N~l~-~lp~~~~~l~~L~~L~--L~~N~l~~~~------~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 118 FMCCNKLT-ELPRGIERLTHLTHLA--LDQNQLKSIP------HGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp ECCSSCCC-SCCTTGGGCTTCSEEE--CCSSCCCCCC------TTTTTTCTTCCEEECTTSC
T ss_pred eccCCccc-ccCcccccCCCCCEEE--CCCCcCCccC------HHHHhCCCCCCEEEeeCCC
Confidence 99999875 5677777777 66665 3333333322 2357888999999998776
No 123
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.45 E-value=2.1e-07 Score=106.44 Aligned_cols=125 Identities=18% Similarity=0.123 Sum_probs=75.7
Q ss_pred CCeeEEccCCcC-------CCC-CCccccEEecCCCCCcccC-hhhhccccccEEecccccccccccc-cccCCCcceEE
Q 046764 592 ENLQTFLPTTVS-------HGG-DLKHLRHLDLSETDIQILP-ESVNTLYNLRMLMLQKCNQLEKMCS-DMGNLLKLHHL 661 (1113)
Q Consensus 592 ~~Lr~L~~~~~~-------~i~-~L~~Lr~L~Ls~~~i~~LP-~~i~~L~~L~~LdL~~c~~l~~LP~-~i~~L~~L~~L 661 (1113)
+.++.|.+.++. .+. ++++|++|+|++|+|+.+| ..|.++++|++|+|++| .+..+|. .+.++++|++|
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCEE
Confidence 346666666654 344 7788888888888887775 46778888888888874 4566654 46778888888
Q ss_pred EcCCceecccccccccccc-ccccccceeeccccCccChhhHHHhhcCCCcccceEEeeecC
Q 046764 662 DNFDFCCWKDIDSALQELK-LLHLHGALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTS 722 (1113)
Q Consensus 662 ~L~~~~i~~~~~~~l~~L~-L~~L~g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 722 (1113)
++++|.+....+..+..+. |..|. +.-+.+..+. ......+..+++|+.|+|+.|.
T Consensus 118 ~L~~N~i~~~~~~~~~~l~~L~~L~--L~~N~l~~l~---~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 118 LLYNNHIVVVDRNAFEDMAQLQKLY--LSQNQISRFP---VELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEE--CCSSCCCSCC---GGGTC----CTTCCEEECCSSC
T ss_pred ECCCCcccEECHHHhCCcccCCEEE--CCCCcCCeeC---HHHhcCcccCCcCCEEECCCCC
Confidence 8888776555555566655 55543 3223232221 1111111456677777776665
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.44 E-value=1.3e-06 Score=98.55 Aligned_cols=243 Identities=16% Similarity=0.091 Sum_probs=137.2
Q ss_pred CCCccEEEEecCcCcc--cccCCCCCCccEEEEecccCc--cccCCCCCcccEEEEeccCCCCcccCCCccccccccccC
Q 046764 818 FPNLRDLFLLRCSKLL--GTLPKHLPSLQKLVIQRCEKL--LVDLPSLPSLNELKLGGCKKGGLQKGQPIIGRRIHYGCA 893 (1113)
Q Consensus 818 ~~~L~~L~L~~c~~L~--~~lp~~l~~L~~L~L~~c~~L--~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~ 893 (1113)
+++|+.|.+++.-.-. ..+...+++|+.|+++++... ......++.+..+.+..+ .++...|
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~--------------~I~~~aF 89 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN--------------FVPAYAF 89 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT--------------EECTTTT
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCcccccccccccccccc--------------ccCHHHh
Confidence 5567777776531110 012223566666666666422 111112333333333333 2455677
Q ss_pred CC--------CCCcccccccCCCCC--cCcccCCCCCCceEEEcccCCCcccccccCCCCCcccCCCCccEEEee-----
Q 046764 894 DT--------SSSLRVCLQCCNSLT--NNARVQLPLSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHIL----- 958 (1113)
Q Consensus 894 ~~--------l~~L~~L~~~~N~L~--~~~~l~~l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~----- 958 (1113)
.+ +++|+.+.+.. .++ ....|..+++|+.|++.++. +..+ +... +. .+.++..+...
T Consensus 90 ~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~-i~~i-~~~a----F~-~~~~l~~l~~~~~~~~ 161 (329)
T 3sb4_A 90 SNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKT-APNL-LPEA----LA-DSVTAIFIPLGSSDAY 161 (329)
T ss_dssp EEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSS-CCEE-CTTS----SC-TTTCEEEECTTCTHHH
T ss_pred cccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCC-cccc-chhh----hc-CCCceEEecCcchhhh
Confidence 77 89999998877 777 66678889999999998775 4444 3332 21 33344444321
Q ss_pred ------------cCCCCcccC-------------CCCCcCCccCeEEEcccccccccc-ccCCCCCCCeEEEEecCCCcc
Q 046764 959 ------------SCPSPTSIF-------------SENELPATLQRLEVNSCSKLALLT-LSGNLPQGPKYLELTSCSKWE 1012 (1113)
Q Consensus 959 ------------~c~~L~~ll-------------~~~~l~~sL~~L~i~~c~~L~~l~-l~~~lp~~L~~L~L~~c~~L~ 1012 (1113)
+|..++..+ .....+.++..+.+.+.-.-.... +....+. |+.++++++ .++
T Consensus 162 ~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~-L~~l~L~~n-~i~ 239 (329)
T 3sb4_A 162 RFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPN-LVSLDISKT-NAT 239 (329)
T ss_dssp HTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTT-CCEEECTTB-CCC
T ss_pred hccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCC-CeEEECCCC-Ccc
Confidence 122211000 000001122333332210000000 0001233 888888874 578
Q ss_pred ccCCC----CCCccEEEEeecCCCCcccc-cCCCCCCcC-eeeeccccccccCCCC-CCCCcCcEEEeCCCCCccCCCCC
Q 046764 1013 SIADN----NTSLQVITVFRCKNLKTLPD-GLHKLNNLQ-AFTICKNLVSFPKGGL-PSTQLRDPDITGCQKLEALPDGD 1085 (1113)
Q Consensus 1013 ~lp~~----l~sL~~L~Ls~c~~l~~lP~-~l~~L~sL~-~L~Lcn~L~slp~~~~-~~~sL~~L~l~~C~~L~~l~~~~ 1085 (1113)
.+|.. +++|++|++.++ ++.++. .+.++++|+ .|++.++++.++...+ .+++|+.|++.+ ++++.++.+.
T Consensus 240 ~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~l~l~~-n~i~~I~~~a 316 (329)
T 3sb4_A 240 TIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYVLATG-DKITTLGDEL 316 (329)
T ss_dssp EECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECTTCCEECTTTTTTCTTEEEEEECS-SCCCEECTTT
T ss_pred eecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcccceEEchhhhhCCccCCEEEeCC-CccCccchhh
Confidence 88776 889999999884 788854 678999999 9999558888887665 567899999865 6788887755
Q ss_pred CC
Q 046764 1086 LS 1087 (1113)
Q Consensus 1086 l~ 1087 (1113)
+.
T Consensus 317 F~ 318 (329)
T 3sb4_A 317 FG 318 (329)
T ss_dssp TC
T ss_pred hc
Confidence 54
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.44 E-value=1.9e-07 Score=94.07 Aligned_cols=125 Identities=16% Similarity=0.107 Sum_probs=79.4
Q ss_pred CCeeEEccCCcC--------CCCCCccccEEecCCCCCcccChhhhccccccEEecccccccccccccccCCCcceEEEc
Q 046764 592 ENLQTFLPTTVS--------HGGDLKHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDN 663 (1113)
Q Consensus 592 ~~Lr~L~~~~~~--------~i~~L~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L 663 (1113)
++++.|.+.++. .+..+++|++|+|++|.++.+ ..++.+++|++|++++|.....+|..++++++|++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 556666655443 346778888888888888777 67788888888888875433336666667888888888
Q ss_pred CCceecccc-cccccccc-ccccccceeeccccCccChhhHHHhhcCCCcccceEEeeecC
Q 046764 664 FDFCCWKDI-DSALQELK-LLHLHGALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTS 722 (1113)
Q Consensus 664 ~~~~i~~~~-~~~l~~L~-L~~L~g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 722 (1113)
++|.+.... +..+..+. |..|. +.-+.+... .......+..+++|+.|+++.|.
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~--l~~N~l~~~---~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLD--LFNCEVTNL---NDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEE--CCSSGGGTS---TTHHHHHHTTCSSCCEETTEETT
T ss_pred cCCccCcchhHHHHhcCCCCCEEE--eeCCcCcch---HHHHHHHHHhCccCcEecCCCCC
Confidence 887664422 24455555 54443 222222221 11112357889999999998886
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.43 E-value=2.3e-07 Score=95.88 Aligned_cols=105 Identities=16% Similarity=0.135 Sum_probs=62.4
Q ss_pred cccEEecCCCCCcccChh--hhccccccEEecccccccccc-cccccCCCcceEEEcCCceecccccccccccccccccc
Q 046764 610 HLRHLDLSETDIQILPES--VNTLYNLRMLMLQKCNQLEKM-CSDMGNLLKLHHLDNFDFCCWKDIDSALQELKLLHLHG 686 (1113)
Q Consensus 610 ~Lr~L~Ls~~~i~~LP~~--i~~L~~L~~LdL~~c~~l~~L-P~~i~~L~~L~~L~L~~~~i~~~~~~~l~~L~L~~L~g 686 (1113)
+|++|+|++|.+..+|.. ++.+++|++|+|++| .+..+ |..++++++|++|++++|.+....+.
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~------------ 96 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGENKIKEISNK------------ 96 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSCCCCEECSS------------
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCCcCCccCHH------------
Confidence 667777777777666542 667777777777764 33333 56667777777777776644322222
Q ss_pred ceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCCCCCcceEEEeccC
Q 046764 687 ALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYG 755 (1113)
Q Consensus 687 ~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~L~~~~ 755 (1113)
.+.++++|+.|+++.|...+ .....+..+++|+.|+++++.
T Consensus 97 -------------------~~~~l~~L~~L~L~~N~l~~---------~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 97 -------------------MFLGLHQLKTLNLYDNQISC---------VMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp -------------------SSTTCTTCCEEECCSSCCCE---------ECTTSSTTCTTCCEEECTTCC
T ss_pred -------------------HhcCCCCCCEEECCCCcCCe---------eCHHHhhcCCCCCEEEeCCCC
Confidence 24556667777776665221 122345556677777776643
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.43 E-value=4.5e-07 Score=93.71 Aligned_cols=60 Identities=13% Similarity=0.223 Sum_probs=44.3
Q ss_pred ccccEEecCCCCCcccChhhhccccccEEeccccccccccc-ccccCCCcceEEEcCCceec
Q 046764 609 KHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMC-SDMGNLLKLHHLDNFDFCCW 669 (1113)
Q Consensus 609 ~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP-~~i~~L~~L~~L~L~~~~i~ 669 (1113)
.+|++|+|++|.|+.+|..+.++++|++|+|++| .+..+| ..+.+|++|++|++++|.+.
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCccC
Confidence 4678888888888888877888888888888874 455555 45777888888888877553
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.42 E-value=4.2e-07 Score=93.99 Aligned_cols=124 Identities=18% Similarity=0.233 Sum_probs=69.9
Q ss_pred cEEecCCCCCcccChhhhccccccEEecccccccccccccccCCCcceEEEcCCceecccccccccccc-ccccccceee
Q 046764 612 RHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNFDFCCWKDIDSALQELK-LLHLHGALEI 690 (1113)
Q Consensus 612 r~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~~~~i~~~~~~~l~~L~-L~~L~g~L~i 690 (1113)
+++++++++++.+|..+. .+|++|++++ +.+..+|..+.++++|++|++++|.+....+..+..|. |..|. +.-
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~-n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~--Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDG-NQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLI--LSY 87 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCS-SCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE--CCS
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCC-CcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEE--CCC
Confidence 456666666766666543 4677777776 35566666666777777777777666555555555555 55443 222
Q ss_pred ccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCCCCCcceEEEeccC
Q 046764 691 SKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYG 755 (1113)
Q Consensus 691 ~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~L~~~~ 755 (1113)
+.+..+. ...+.++++|+.|+++.|..... ....+..+++|+.|+++++.
T Consensus 88 N~l~~i~------~~~f~~l~~L~~L~L~~N~l~~~---------~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 88 NRLRCIP------PRTFDGLKSLRLLSLHGNDISVV---------PEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp SCCCBCC------TTTTTTCTTCCEEECCSSCCCBC---------CTTTTTTCTTCCEEECCSSC
T ss_pred CccCEeC------HHHhCCCCCCCEEECCCCCCCee---------ChhhhhcCccccEEEeCCCC
Confidence 2222221 22356666777777766653211 11234455667777776643
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.41 E-value=1.3e-06 Score=98.41 Aligned_cols=60 Identities=15% Similarity=0.219 Sum_probs=42.0
Q ss_pred CccccEEecCCCCCc--------------------ccC-hhhhc--------cccccEEecccccccccccc-cccCCCc
Q 046764 608 LKHLRHLDLSETDIQ--------------------ILP-ESVNT--------LYNLRMLMLQKCNQLEKMCS-DMGNLLK 657 (1113)
Q Consensus 608 L~~Lr~L~Ls~~~i~--------------------~LP-~~i~~--------L~~L~~LdL~~c~~l~~LP~-~i~~L~~ 657 (1113)
+++|++|||++|+|. .+| ..|.+ +.+|+.|+|.+ .+..++. .|.++++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~ 125 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDN 125 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTCTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhcCcc
Confidence 667788888877776 343 34566 88888888886 5666664 4688888
Q ss_pred ceEEEcCCceec
Q 046764 658 LHHLDNFDFCCW 669 (1113)
Q Consensus 658 L~~L~L~~~~i~ 669 (1113)
|+.|++.++.+.
T Consensus 126 L~~l~l~~n~i~ 137 (329)
T 3sb4_A 126 LKICQIRKKTAP 137 (329)
T ss_dssp CCEEEBCCSSCC
T ss_pred cceEEcCCCCcc
Confidence 888888877543
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.41 E-value=2e-07 Score=94.83 Aligned_cols=79 Identities=14% Similarity=0.174 Sum_probs=47.3
Q ss_pred cCCCCCeeEEccCCcC-----CCCCCc-cccEEecCCCCCcccChhhhccccccEEecccccccccccccc-cCCCcceE
Q 046764 588 FFEFENLQTFLPTTVS-----HGGDLK-HLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCSDM-GNLLKLHH 660 (1113)
Q Consensus 588 ~~~l~~Lr~L~~~~~~-----~i~~L~-~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i-~~L~~L~~ 660 (1113)
+..+++|+.|.+.++. .+..+. +|++|+|++|.++.+ ..++.+++|++|++++| .+..+|..+ +.+++|++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTE 92 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCE
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCCE
Confidence 4455666666655543 233333 666666666666665 45666666666666663 455566554 66666666
Q ss_pred EEcCCcee
Q 046764 661 LDNFDFCC 668 (1113)
Q Consensus 661 L~L~~~~i 668 (1113)
|++++|.+
T Consensus 93 L~L~~N~i 100 (176)
T 1a9n_A 93 LILTNNSL 100 (176)
T ss_dssp EECCSCCC
T ss_pred EECCCCcC
Confidence 66666654
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.38 E-value=2.2e-07 Score=94.51 Aligned_cols=136 Identities=15% Similarity=0.121 Sum_probs=92.5
Q ss_pred CCCCCccccEEecCCCCCcccChhhhccc-cccEEecccccccccccccccCCCcceEEEcCCceecccccccccccc-c
Q 046764 604 HGGDLKHLRHLDLSETDIQILPESVNTLY-NLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNFDFCCWKDIDSALQELK-L 681 (1113)
Q Consensus 604 ~i~~L~~Lr~L~Ls~~~i~~LP~~i~~L~-~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~~~~i~~~~~~~l~~L~-L 681 (1113)
.+.++.+|++|+|++|+++.+|. +..+. +|++|++++| .+..+ ..++.+++|++|++++|.+....+..+..+. |
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 45678899999999999999975 66665 9999999995 67777 6799999999999999987643333336666 5
Q ss_pred cccccceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCCCCCcceEEEeccC
Q 046764 682 LHLHGALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYG 755 (1113)
Q Consensus 682 ~~L~g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~L~~~~ 755 (1113)
..|. +.-+.+..+. . ...+..+++|+.|+++.|..... .......+..+++|+.|+++++.
T Consensus 91 ~~L~--L~~N~i~~~~---~--~~~l~~l~~L~~L~l~~N~i~~~------~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 91 TELI--LTNNSLVELG---D--LDPLASLKSLTYLCILRNPVTNK------KHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CEEE--CCSCCCCCGG---G--GGGGGGCTTCCEEECCSSGGGGS------TTHHHHHHHHCTTCSEETTEECC
T ss_pred CEEE--CCCCcCCcch---h--hHhhhcCCCCCEEEecCCCCCCc------HhHHHHHHHHCCccceeCCCcCC
Confidence 5554 3223332221 1 12577888999999987762211 00001124557788888887754
No 132
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.37 E-value=4.5e-07 Score=103.73 Aligned_cols=132 Identities=18% Similarity=0.126 Sum_probs=93.9
Q ss_pred ccccEEecCCCCCcccChh-hh-ccccccEEeccccccccccc-ccccCCCcceEEEcCCceecccccccccccc-cccc
Q 046764 609 KHLRHLDLSETDIQILPES-VN-TLYNLRMLMLQKCNQLEKMC-SDMGNLLKLHHLDNFDFCCWKDIDSALQELK-LLHL 684 (1113)
Q Consensus 609 ~~Lr~L~Ls~~~i~~LP~~-i~-~L~~L~~LdL~~c~~l~~LP-~~i~~L~~L~~L~L~~~~i~~~~~~~l~~L~-L~~L 684 (1113)
..+++|+|++|+|+.+|.. +. ++.+|++|+|++| .+..+| ..+.++++|++|++++|.+....+..+..|. |+.|
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence 4689999999999998654 55 8999999999995 667776 4689999999999999988665565667776 6665
Q ss_pred ccceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCCCCCcceEEEeccC
Q 046764 685 HGALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYG 755 (1113)
Q Consensus 685 ~g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~L~~~~ 755 (1113)
. +.-+.+..+ ....+.++++|+.|+|+.|..... ....+..+..+++|+.|+++++.
T Consensus 118 ~--L~~N~i~~~------~~~~~~~l~~L~~L~L~~N~l~~l------~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 118 L--LYNNHIVVV------DRNAFEDMAQLQKLYLSQNQISRF------PVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp E--CCSSCCCEE------CTTTTTTCTTCCEEECCSSCCCSC------CGGGTC----CTTCCEEECCSSC
T ss_pred E--CCCCcccEE------CHHHhCCcccCCEEECCCCcCCee------CHHHhcCcccCCcCCEEECCCCC
Confidence 4 333333222 234578899999999988863321 11223333568899999998854
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.36 E-value=3.7e-07 Score=89.92 Aligned_cols=62 Identities=15% Similarity=0.146 Sum_probs=32.6
Q ss_pred CCCCccccEEecCCCCCcccChhhhccccccEEeccccccccc-ccccccCCCcceEEEcCCcee
Q 046764 605 GGDLKHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEK-MCSDMGNLLKLHHLDNFDFCC 668 (1113)
Q Consensus 605 i~~L~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~-LP~~i~~L~~L~~L~L~~~~i 668 (1113)
++.+++|++|++++|.++.+ ..++.+++|++|++++|. +.. +|..++++++|++|++++|.+
T Consensus 38 ~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~ls~N~i 100 (149)
T 2je0_A 38 TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNR-VSGGLEVLAEKCPNLTHLNLSGNKI 100 (149)
T ss_dssp CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSC-CCSCTHHHHHHCTTCCEEECTTSCC
T ss_pred HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCc-ccchHHHHhhhCCCCCEEECCCCcC
Confidence 34555555555555555555 445555555555555532 332 444444555555555555544
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.35 E-value=3.7e-07 Score=114.20 Aligned_cols=74 Identities=22% Similarity=0.131 Sum_probs=34.1
Q ss_pred CCCCccccEEecCCCCCcccChhhhccccccEEecccccccccccccccCCCcceEEEcCCceecccccccccccc
Q 046764 605 GGDLKHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNFDFCCWKDIDSALQELK 680 (1113)
Q Consensus 605 i~~L~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~~~~i~~~~~~~l~~L~ 680 (1113)
+..+.+|++|+|++|.+..+|..+.++++|++|+|++| .+..+|..|++|++|++|+|++|.+. ..|..+..|.
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 293 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF 293 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred hccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence 34444455555555555445444445555555555542 33344544555555555555554443 3344444433
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.33 E-value=6.6e-07 Score=108.43 Aligned_cols=63 Identities=29% Similarity=0.339 Sum_probs=38.9
Q ss_pred CCCCCccccEEecCCCCCcccChhhhccccccEEecccccccccccccccCCCcceEEEcCCcee
Q 046764 604 HGGDLKHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNFDFCC 668 (1113)
Q Consensus 604 ~i~~L~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~~~~i 668 (1113)
.++.+++|++|+|++|.++.+|..|++|++|++|+|++| .+..+| .+++|++|++|++++|.+
T Consensus 458 ~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N~l 520 (567)
T 1dce_A 458 HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNNRL 520 (567)
T ss_dssp CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSSCC
T ss_pred CccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCCCC
Confidence 355566666666666666666666666666666666663 455565 566666666666666544
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.31 E-value=6.8e-07 Score=92.29 Aligned_cols=77 Identities=18% Similarity=0.241 Sum_probs=65.9
Q ss_pred CeeEEccCCcC--------CCCCCccccEEecCCCCCccc-ChhhhccccccEEecccccccccccc-cccCCCcceEEE
Q 046764 593 NLQTFLPTTVS--------HGGDLKHLRHLDLSETDIQIL-PESVNTLYNLRMLMLQKCNQLEKMCS-DMGNLLKLHHLD 662 (1113)
Q Consensus 593 ~Lr~L~~~~~~--------~i~~L~~Lr~L~Ls~~~i~~L-P~~i~~L~~L~~LdL~~c~~l~~LP~-~i~~L~~L~~L~ 662 (1113)
+++.|.+.++. .|+++++|++|+|++|.|+.+ |..++++++|++|+|++| .+..+|. .++++++|++|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCCCEEE
Confidence 78888887764 378999999999999999988 789999999999999995 5666654 589999999999
Q ss_pred cCCceecc
Q 046764 663 NFDFCCWK 670 (1113)
Q Consensus 663 L~~~~i~~ 670 (1113)
+++|.+..
T Consensus 109 L~~N~l~~ 116 (192)
T 1w8a_A 109 LYDNQISC 116 (192)
T ss_dssp CCSSCCCE
T ss_pred CCCCcCCe
Confidence 99986644
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.26 E-value=6e-07 Score=112.24 Aligned_cols=96 Identities=20% Similarity=0.244 Sum_probs=66.4
Q ss_pred cCCCCCeeEEccCCcC------CCCCCccccEEecCCCCCcccChhhhccccccEEecccccccccccccccCCCcceEE
Q 046764 588 FFEFENLQTFLPTTVS------HGGDLKHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHL 661 (1113)
Q Consensus 588 ~~~l~~Lr~L~~~~~~------~i~~L~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L 661 (1113)
+..++.|+.|.+.++. .+.++++|++|+|++|.|+.+|..|++|++|++|+|++| .+..+|..|++|++|++|
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGTTCSEE
T ss_pred hccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCCCCCEE
Confidence 4556777777776654 455777888888888888877877888888888888874 466778778888888888
Q ss_pred EcCCceecccccccccccc-ccccc
Q 046764 662 DNFDFCCWKDIDSALQELK-LLHLH 685 (1113)
Q Consensus 662 ~L~~~~i~~~~~~~l~~L~-L~~L~ 685 (1113)
++++|.+. ..|..+..|. |..|.
T Consensus 299 ~L~~N~l~-~lp~~~~~l~~L~~L~ 322 (727)
T 4b8c_D 299 YFFDNMVT-TLPWEFGNLCNLQFLG 322 (727)
T ss_dssp ECCSSCCC-CCCSSTTSCTTCCCEE
T ss_pred ECCCCCCC-ccChhhhcCCCccEEe
Confidence 88877663 4455555555 44443
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.20 E-value=1.1e-07 Score=98.83 Aligned_cols=108 Identities=25% Similarity=0.235 Sum_probs=74.2
Q ss_pred CCCCCccccEEecCCCCCcccChhhhccccccEEecccccccccccccccCCCcceEEEcCCceecccccccccccc-cc
Q 046764 604 HGGDLKHLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNFDFCCWKDIDSALQELK-LL 682 (1113)
Q Consensus 604 ~i~~L~~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~~~~i~~~~~~~l~~L~-L~ 682 (1113)
.++++++|++|+|++|.++.+| .++++++|++|++++| .+..+|..+..+++|++|++++|.+.. .+ .+..+. |.
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~ 118 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLR 118 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSS
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCC
Confidence 4667888888888888888888 8888889999999884 677888877788888889888887644 23 344444 44
Q ss_pred ccccceeeccccCccChhhHHHhhcCCCcccceEEeeecC
Q 046764 683 HLHGALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTS 722 (1113)
Q Consensus 683 ~L~g~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 722 (1113)
.|. +.-+.+... .. ...+..+++|+.|++++|.
T Consensus 119 ~L~--l~~N~i~~~---~~--~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 119 VLY--MSNNKITNW---GE--IDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp EEE--ESEEECCCH---HH--HHHHTTTTTCSEEEECSCH
T ss_pred EEE--CCCCcCCch---hH--HHHHhcCCCCCEEEecCCc
Confidence 443 222222211 11 1356778888888887664
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.12 E-value=3.5e-06 Score=85.38 Aligned_cols=76 Identities=20% Similarity=0.265 Sum_probs=42.3
Q ss_pred CCeeEEccCCcC-------CCCCCccccEEecCCCCCcccChh-hhccccccEEeccccccccccccc-ccCCCcceEEE
Q 046764 592 ENLQTFLPTTVS-------HGGDLKHLRHLDLSETDIQILPES-VNTLYNLRMLMLQKCNQLEKMCSD-MGNLLKLHHLD 662 (1113)
Q Consensus 592 ~~Lr~L~~~~~~-------~i~~L~~Lr~L~Ls~~~i~~LP~~-i~~L~~L~~LdL~~c~~l~~LP~~-i~~L~~L~~L~ 662 (1113)
++|+.|.+.++. .|+++++|++|+|++|+|+.+|.. +.++++|++|+|++ +.+..+|.. +.++++|++|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND-NHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC-CccceeCHHHhccccCCCEEE
Confidence 455555554443 355566666666666666655543 35566666666665 344555544 55566666666
Q ss_pred cCCcee
Q 046764 663 NFDFCC 668 (1113)
Q Consensus 663 L~~~~i 668 (1113)
+++|.+
T Consensus 112 L~~N~~ 117 (174)
T 2r9u_A 112 LYNNPW 117 (174)
T ss_dssp CCSSCB
T ss_pred eCCCCc
Confidence 665543
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.10 E-value=5.6e-06 Score=83.98 Aligned_cols=60 Identities=23% Similarity=0.269 Sum_probs=39.4
Q ss_pred ccccEEecCCCCCcccCh-hhhccccccEEeccccccccccccc-ccCCCcceEEEcCCceec
Q 046764 609 KHLRHLDLSETDIQILPE-SVNTLYNLRMLMLQKCNQLEKMCSD-MGNLLKLHHLDNFDFCCW 669 (1113)
Q Consensus 609 ~~Lr~L~Ls~~~i~~LP~-~i~~L~~L~~LdL~~c~~l~~LP~~-i~~L~~L~~L~L~~~~i~ 669 (1113)
.+|++|++++|+++.+|. .++.+++|++|++++| .+..+|.. ++++++|++|++++|.+.
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~ 89 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENKLQ 89 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCCCcc
Confidence 567777777777776654 4567777777777764 45555544 467777777777766543
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.09 E-value=8.8e-06 Score=82.52 Aligned_cols=127 Identities=15% Similarity=0.146 Sum_probs=91.0
Q ss_pred cccEEecCCCCCcccChhhhccccccEEeccccccccccccc-ccCCCcceEEEcCCceecccccccccccc-ccccccc
Q 046764 610 HLRHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKMCSD-MGNLLKLHHLDNFDFCCWKDIDSALQELK-LLHLHGA 687 (1113)
Q Consensus 610 ~Lr~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~-i~~L~~L~~L~L~~~~i~~~~~~~l~~L~-L~~L~g~ 687 (1113)
..+.+++++++++.+|..+. .+|++|++++| .+..+|.. ++++++|++|++++|.+....+..+..+. |..|.
T Consensus 8 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-- 82 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGIP--SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILY-- 82 (177)
T ss_dssp ETTEEECCSSCCSSCCTTCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE--
T ss_pred CCCEEEecCCCCccCCCCCC--CCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEE--
Confidence 35789999999999997654 79999999995 56777764 58999999999999988655555566666 66554
Q ss_pred eeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCCCCCcceEEEeccCc
Q 046764 688 LEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGE 756 (1113)
Q Consensus 688 L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~L~~~~~ 756 (1113)
+.-+.+... ....+..+++|+.|+++.|..... ....+..+++|+.|+++++..
T Consensus 83 l~~N~l~~~------~~~~~~~l~~L~~L~l~~N~l~~~---------~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 83 LHENKLQSL------PNGVFDKLTQLKELALDTNQLKSV---------PDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CCSSCCCCC------CTTTTTTCTTCCEEECCSSCCSCC---------CTTTTTTCTTCCEEECCSSCB
T ss_pred CCCCCcccc------CHHHhhCCcccCEEECcCCcceEe---------CHHHhcCCcccCEEEecCCCe
Confidence 333333322 123467889999999988863311 112346678999999988653
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.06 E-value=5.8e-06 Score=83.40 Aligned_cols=54 Identities=20% Similarity=0.231 Sum_probs=26.2
Q ss_pred cEEecCCCCCcccChhhhccccccEEecccccccccc-cccccCCCcceEEEcCCcee
Q 046764 612 RHLDLSETDIQILPESVNTLYNLRMLMLQKCNQLEKM-CSDMGNLLKLHHLDNFDFCC 668 (1113)
Q Consensus 612 r~L~Ls~~~i~~LP~~i~~L~~L~~LdL~~c~~l~~L-P~~i~~L~~L~~L~L~~~~i 668 (1113)
+.|+++++.++.+|..+. .+|++|+|++| .+..+ |..++++++|++|++++|.+
T Consensus 12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l 66 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQL 66 (170)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCC
T ss_pred CEEEeCCCCcCccCccCC--CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCc
Confidence 445555555555554442 45555555552 33333 33445555555555555433
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.03 E-value=1.3e-06 Score=90.69 Aligned_cols=125 Identities=17% Similarity=0.218 Sum_probs=91.8
Q ss_pred cccEEecCCC--CCcccChhhhccccccEEecccccccccccccccCCCcceEEEcCCceecccccccccccc-cccccc
Q 046764 610 HLRHLDLSET--DIQILPESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNFDFCCWKDIDSALQELK-LLHLHG 686 (1113)
Q Consensus 610 ~Lr~L~Ls~~--~i~~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~~~~i~~~~~~~l~~L~-L~~L~g 686 (1113)
.|+.+.++++ .++.+|..++.+++|++|++++| .+..+| .+.++++|++|++++|.+. ..|..+..+. |..|.
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~- 99 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELW- 99 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEE-
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEE-
Confidence 4556666654 67788889999999999999985 678898 8999999999999999885 4565555555 66554
Q ss_pred ceeeccccCccChhhHHHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCCCCCcceEEEeccC
Q 046764 687 ALEISKLENVRDASEAGEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYG 755 (1113)
Q Consensus 687 ~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~L~~~~ 755 (1113)
+.-+.+..+ + .+..+++|+.|+++.|.... ...+..+..+++|+.|+++++.
T Consensus 100 -L~~N~l~~l-------~-~~~~l~~L~~L~l~~N~i~~--------~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 100 -ISYNQIASL-------S-GIEKLVNLRVLYMSNNKITN--------WGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp -EEEEECCCH-------H-HHHHHHHSSEEEESEEECCC--------HHHHHHHTTTTTCSEEEECSCH
T ss_pred -CcCCcCCcC-------C-ccccCCCCCEEECCCCcCCc--------hhHHHHHhcCCCCCEEEecCCc
Confidence 333333332 1 36678899999999886321 1122467778999999999864
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.02 E-value=7.4e-06 Score=82.97 Aligned_cols=58 Identities=26% Similarity=0.327 Sum_probs=31.7
Q ss_pred ccccEEecCCCCCccc-ChhhhccccccEEecccccccccccccc-cCCCcceEEEcCCce
Q 046764 609 KHLRHLDLSETDIQIL-PESVNTLYNLRMLMLQKCNQLEKMCSDM-GNLLKLHHLDNFDFC 667 (1113)
Q Consensus 609 ~~Lr~L~Ls~~~i~~L-P~~i~~L~~L~~LdL~~c~~l~~LP~~i-~~L~~L~~L~L~~~~ 667 (1113)
.+|++|+|++|.|+.+ |..|+++++|++|+|++| .+..+|..+ +++++|++|++++|.
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCc
Confidence 4555555555555555 445555555555555552 445555442 555555555555553
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.98 E-value=8.8e-06 Score=82.03 Aligned_cols=61 Identities=28% Similarity=0.394 Sum_probs=29.5
Q ss_pred CCCCccccEEecCCCCCcccChh-hhccccccEEeccccccccccccc-ccCCCcceEEEcCCc
Q 046764 605 GGDLKHLRHLDLSETDIQILPES-VNTLYNLRMLMLQKCNQLEKMCSD-MGNLLKLHHLDNFDF 666 (1113)
Q Consensus 605 i~~L~~Lr~L~Ls~~~i~~LP~~-i~~L~~L~~LdL~~c~~l~~LP~~-i~~L~~L~~L~L~~~ 666 (1113)
|+++++|++|+|++|+|+.+|.. +..+++|++|+|++| .+..+|.. +.++++|++|++++|
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 50 FDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred hcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEEeCCC
Confidence 44455555555555555544332 345555555555542 34444432 445555555555554
No 146
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.94 E-value=0.00034 Score=80.63 Aligned_cols=60 Identities=3% Similarity=0.055 Sum_probs=41.6
Q ss_pred CCCCCCccccEEecCCCCCcccC-hhhhccccccEEecccccccccccc-cccCCCcceEEEcCC
Q 046764 603 SHGGDLKHLRHLDLSETDIQILP-ESVNTLYNLRMLMLQKCNQLEKMCS-DMGNLLKLHHLDNFD 665 (1113)
Q Consensus 603 ~~i~~L~~Lr~L~Ls~~~i~~LP-~~i~~L~~L~~LdL~~c~~l~~LP~-~i~~L~~L~~L~L~~ 665 (1113)
.+|.++.+|+.+.|.. .++.++ .+|.++.+|+.+++.. .+..++. .+.++.+|+.+.+..
T Consensus 65 ~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~c~~L~~i~~p~ 126 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPD--SVKMIGRCTFSGCYALKSILLPL 126 (394)
T ss_dssp TTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCCCCCCT
T ss_pred HHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCC--CceEccchhhcccccchhhcccC
Confidence 3677888888888864 477774 5688888888888875 3555553 456677777665543
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.85 E-value=0.00068 Score=78.17 Aligned_cols=211 Identities=14% Similarity=0.141 Sum_probs=110.8
Q ss_pred CccEEEEecCcCcccccCC-CC--CCccEEEEecc-cCcc-ccCCCCCcccEEEEeccCCCCcccCCCccccccccccCC
Q 046764 820 NLRDLFLLRCSKLLGTLPK-HL--PSLQKLVIQRC-EKLL-VDLPSLPSLNELKLGGCKKGGLQKGQPIIGRRIHYGCAD 894 (1113)
Q Consensus 820 ~L~~L~L~~c~~L~~~lp~-~l--~~L~~L~L~~c-~~L~-~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~l~~~~~~ 894 (1113)
+|+.+.+... ++ .++. +| .+|+.+.+... ..+. ..+..+++|+.+++.+|.... ++.+.+.
T Consensus 136 ~L~~i~l~~~--i~-~I~~~aF~~~~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~l~~-----------I~~~aF~ 201 (401)
T 4fdw_A 136 QIAKVVLNEG--LK-SIGDMAFFNSTVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKITK-----------LPASTFV 201 (401)
T ss_dssp CCSEEECCTT--CC-EECTTTTTTCCCCEEECCTTCCEECSSTTTTCTTCCEEECTTSCCSE-----------ECTTTTT
T ss_pred CccEEEeCCC--cc-EECHHhcCCCCceEEEeCCCccEehHHHhhCcccCCeeecCCCcceE-----------echhhEe
Confidence 6888877653 44 3332 12 35666666542 1111 134446666666666654443 2223443
Q ss_pred CCCCcccccccCCCCC--cCcccCCCCCCceEEEcccCCCcccccccCCCCCcccCCCCccEEEeecCCCCcccCCCCCc
Q 046764 895 TSSSLRVCLQCCNSLT--NNARVQLPLSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHILSCPSPTSIFSENEL 972 (1113)
Q Consensus 895 ~l~~L~~L~~~~N~L~--~~~~l~~l~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~c~~L~~ll~~~~l 972 (1113)
+.+|+.+.+.. .++ ....|..+++|+.+.+.+ +++.+ +... +. . .+|+.+.+.+ .++. ++...
T Consensus 202 -~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~--~l~~I-~~~a----F~-~-~~L~~i~lp~--~i~~-I~~~a- 266 (401)
T 4fdw_A 202 -YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPE--NVSTI-GQEA----FR-E-SGITTVKLPN--GVTN-IASRA- 266 (401)
T ss_dssp -TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCT--TCCEE-CTTT----TT-T-CCCSEEEEET--TCCE-ECTTT-
T ss_pred -ecccCEEEeCC-chheehhhHhhCCCCCCEEecCC--CccCc-cccc----cc-c-CCccEEEeCC--CccE-EChhH-
Confidence 35555555443 344 444555666666666654 24444 3222 11 2 4555555522 1222 11111
Q ss_pred CCccCeEEEccccccccccccCCCCCCCeEEEEecC----CCccccCCC----CCCccEEEEeecCCCCccc-ccCCCCC
Q 046764 973 PATLQRLEVNSCSKLALLTLSGNLPQGPKYLELTSC----SKWESIADN----NTSLQVITVFRCKNLKTLP-DGLHKLN 1043 (1113)
Q Consensus 973 ~~sL~~L~i~~c~~L~~l~l~~~lp~~L~~L~L~~c----~~L~~lp~~----l~sL~~L~Ls~c~~l~~lP-~~l~~L~ 1043 (1113)
+.+|.+ |+.+.+.+. .....++.. +++|+.+++.+ .++.++ ..+.+++
T Consensus 267 --------F~~c~~-------------L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~ 323 (401)
T 4fdw_A 267 --------FYYCPE-------------LAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNR 323 (401)
T ss_dssp --------TTTCTT-------------CCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCC
T ss_pred --------hhCCCC-------------CCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCC
Confidence 122333 444444432 112234443 68888888874 477774 4677888
Q ss_pred CcCeeeeccccccccCCCCCCCCcCcEEEeCCCCCccCCC
Q 046764 1044 NLQAFTICKNLVSFPKGGLPSTQLRDPDITGCQKLEALPD 1083 (1113)
Q Consensus 1044 sL~~L~Lcn~L~slp~~~~~~~sL~~L~l~~C~~L~~l~~ 1083 (1113)
+|+.+.|.+++..++...+.-.+|+.+++.++ .+..++.
T Consensus 324 ~L~~l~lp~~l~~I~~~aF~~~~L~~l~l~~n-~~~~l~~ 362 (401)
T 4fdw_A 324 KVTQLTIPANVTQINFSAFNNTGIKEVKVEGT-TPPQVFE 362 (401)
T ss_dssp SCCEEEECTTCCEECTTSSSSSCCCEEEECCS-SCCBCCC
T ss_pred CccEEEECccccEEcHHhCCCCCCCEEEEcCC-CCccccc
Confidence 99998885568888776653238888888773 5555554
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.70 E-value=0.0016 Score=75.12 Aligned_cols=58 Identities=10% Similarity=0.074 Sum_probs=40.2
Q ss_pred CCCCCccccEEecCCCCCcccC-hhhhccccccEEeccccccccccc-ccccCCCcceEEEcCCc
Q 046764 604 HGGDLKHLRHLDLSETDIQILP-ESVNTLYNLRMLMLQKCNQLEKMC-SDMGNLLKLHHLDNFDF 666 (1113)
Q Consensus 604 ~i~~L~~Lr~L~Ls~~~i~~LP-~~i~~L~~L~~LdL~~c~~l~~LP-~~i~~L~~L~~L~L~~~ 666 (1113)
.|.+. +|+.+.|..+ ++.++ ..|.+ .+|+.+.+.. .+..++ ..+.++.+|+.+++.+|
T Consensus 131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n 190 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKT 190 (401)
T ss_dssp TTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTCCEEECTTS
T ss_pred hcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccCCeeecCCC
Confidence 55554 6888888765 77774 45655 4688888875 456665 45678888888888765
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.66 E-value=4.3e-05 Score=86.56 Aligned_cols=63 Identities=19% Similarity=0.129 Sum_probs=37.5
Q ss_pred CCCCccccEEecCC-CCCcccC-hhhhccccccEEeccccccccccc-ccccCCCcceEEEcCCcee
Q 046764 605 GGDLKHLRHLDLSE-TDIQILP-ESVNTLYNLRMLMLQKCNQLEKMC-SDMGNLLKLHHLDNFDFCC 668 (1113)
Q Consensus 605 i~~L~~Lr~L~Ls~-~~i~~LP-~~i~~L~~L~~LdL~~c~~l~~LP-~~i~~L~~L~~L~L~~~~i 668 (1113)
++.+.+|++|+|++ |.+..+| ..|++|.+|++|+|++| .+..+| ..|++|++|++|+|++|.+
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 45556666666664 6666664 45666666666666664 344443 3456666666666666644
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.64 E-value=7.2e-05 Score=84.68 Aligned_cols=85 Identities=19% Similarity=0.130 Sum_probs=70.6
Q ss_pred cccccCCCCCeeEEccCC-cC-------CCCCCccccEEecCCCCCcccC-hhhhccccccEEecccccccccccccccC
Q 046764 584 MFEPFFEFENLQTFLPTT-VS-------HGGDLKHLRHLDLSETDIQILP-ESVNTLYNLRMLMLQKCNQLEKMCSDMGN 654 (1113)
Q Consensus 584 ~~~~~~~l~~Lr~L~~~~-~~-------~i~~L~~Lr~L~Ls~~~i~~LP-~~i~~L~~L~~LdL~~c~~l~~LP~~i~~ 654 (1113)
.++.+..+++|+.|.+.+ +. .|++|.+|++|+|++|+|+.+| ..|++|++|++|+|++ +.+..+|..+..
T Consensus 23 ~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~ 101 (347)
T 2ifg_A 23 SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF-NALESLSWKTVQ 101 (347)
T ss_dssp TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS-SCCSCCCSTTTC
T ss_pred ccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC-CccceeCHHHcc
Confidence 344477888999999986 54 6899999999999999999884 5789999999999999 578888877654
Q ss_pred CCcceEEEcCCceec
Q 046764 655 LLKLHHLDNFDFCCW 669 (1113)
Q Consensus 655 L~~L~~L~L~~~~i~ 669 (1113)
..+|++|++.+|.+.
T Consensus 102 ~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 102 GLSLQELVLSGNPLH 116 (347)
T ss_dssp SCCCCEEECCSSCCC
T ss_pred cCCceEEEeeCCCcc
Confidence 445999999998653
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.43 E-value=1.7e-05 Score=90.72 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=25.5
Q ss_pred hcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCCCCCcceEEEeccC
Q 046764 706 QLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYG 755 (1113)
Q Consensus 706 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~L~~~~ 755 (1113)
.+...++|+.|+|++|... ..........+...++|+.|++++|.
T Consensus 178 ~L~~~~~L~~L~Ls~N~l~-----~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 178 GLAGNTSVTHLSLLHTGLG-----DEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HHHTCSSCCEEECTTSSCH-----HHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HHhcCCCcCEEeCCCCCCC-----cHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 3455667777877766511 11112234455556678888777754
No 152
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.31 E-value=0.00069 Score=71.67 Aligned_cols=106 Identities=9% Similarity=0.092 Sum_probs=75.0
Q ss_pred cCcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEecCChhh-Hhh-hCCCceEecCCCCHHHHHHHHHhcccCCCC
Q 046764 377 SGKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTTRNRDV-AAI-MGSVRDYPLKESTKDDCLQVFTQHCLGMRD 454 (1113)
Q Consensus 377 ~~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTTR~~~v-a~~-~~~~~~~~l~~L~~~~s~~LF~~~af~~~~ 454 (1113)
.+++.+||+||++..+...++.+...+.....+.++|+||+.... ... ......+++++++.++.++++...+...+.
T Consensus 124 ~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~ 203 (250)
T 1njg_A 124 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI 203 (250)
T ss_dssp SSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC
T ss_pred cCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 356799999999776556777777666555567888888876432 111 122368999999999999999887643221
Q ss_pred CCCchhHHHHHHHHHHHhCCChHHHHHHHhhh
Q 046764 455 FSMQQSLKDISKKIVIRCNGLPLAAKTLAGLL 486 (1113)
Q Consensus 455 ~~~~~~l~~i~~~I~~~c~GlPLAi~~ig~~L 486 (1113)
... .+....|++.|+|.|..+..+...+
T Consensus 204 -~~~---~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 204 -AHE---PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp -CBC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -CCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 111 2557789999999999888765543
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.30 E-value=0.0087 Score=68.74 Aligned_cols=55 Identities=9% Similarity=0.218 Sum_probs=42.5
Q ss_pred cccCCCCCeeEEccCCc------CCCCCCccccEEecCCCCCcccC-hhhhccccccEEeccc
Q 046764 586 EPFFEFENLQTFLPTTV------SHGGDLKHLRHLDLSETDIQILP-ESVNTLYNLRMLMLQK 641 (1113)
Q Consensus 586 ~~~~~l~~Lr~L~~~~~------~~i~~L~~Lr~L~Ls~~~i~~LP-~~i~~L~~L~~LdL~~ 641 (1113)
..|.+|.+|+++.+... ..|.++.+|+.++|..+ ++.++ ..+.++.+|+.+.+..
T Consensus 65 ~AF~~c~~L~~i~lp~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~ 126 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPSTVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPL 126 (394)
T ss_dssp TTTTTCTTEEEEECCTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred HHhhCCCCceEEEeCCCccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccC
Confidence 35778899999877432 27889999999999755 77774 5788888888877764
No 154
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.25 E-value=6.1e-05 Score=86.12 Aligned_cols=47 Identities=17% Similarity=0.179 Sum_probs=28.4
Q ss_pred HhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCCCCCcceEEEeccC
Q 046764 704 EAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYG 755 (1113)
Q Consensus 704 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~L~~~~ 755 (1113)
...+...++|+.|+|++|... ..........+...++|+.|+++++.
T Consensus 204 ~~~L~~~~~L~~L~Ls~N~i~-----~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 204 AAQLDRNRQLQELNVAYNGAG-----DTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHGGGCSCCCEEECCSSCCC-----HHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHhcCCCcCeEECCCCCCC-----HHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 334566678888888877521 11122233445556778888888764
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.24 E-value=0.00016 Score=82.05 Aligned_cols=58 Identities=10% Similarity=0.078 Sum_probs=24.8
Q ss_pred CCCccEEEEeecCCCCcccccC---CCCCCcCeeee-cccccc-----ccCCCCCCCCcCcEEEeCC
Q 046764 1018 NTSLQVITVFRCKNLKTLPDGL---HKLNNLQAFTI-CKNLVS-----FPKGGLPSTQLRDPDITGC 1075 (1113)
Q Consensus 1018 l~sL~~L~Ls~c~~l~~lP~~l---~~L~sL~~L~L-cn~L~s-----lp~~~~~~~sL~~L~l~~C 1075 (1113)
+++|+.|++++|......+..+ ..+++|++|+| +|.+.. ++.+..++++|+.|++++|
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 4555555555543321111111 23455555555 444432 2222122345555555544
No 156
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.18 E-value=0.0008 Score=76.02 Aligned_cols=179 Identities=8% Similarity=0.038 Sum_probs=98.8
Q ss_pred cEEEEEEecCCCCCh---hhhhhhcccccCCCCCcEEEEecCChhhHhhh-----------CC-CceEecCCCCHHHHHH
Q 046764 379 KKFLLVLGDVWNENY---SDWDSLSLPFEAGAPGSQIIVTTRNRDVAAIM-----------GS-VRDYPLKESTKDDCLQ 443 (1113)
Q Consensus 379 kr~LiVLDDv~~~~~---~~w~~l~~~l~~~~~gSrIivTTR~~~va~~~-----------~~-~~~~~l~~L~~~~s~~ 443 (1113)
++++|||||++..+. .+|......+.....+.++|+|+|.......+ +. ...+++.+|+.+++.+
T Consensus 137 ~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~ 216 (357)
T 2fna_A 137 DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIE 216 (357)
T ss_dssp SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHH
T ss_pred CCeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHH
Confidence 489999999966321 12222222222222467899999986542211 11 2578999999999999
Q ss_pred HHHhcccCCCCCCCchhHHHHHHHHHHHhCCChHHHHHHHhhhcCCCCc-ccccccccc--cccCcCCc--------ccc
Q 046764 444 VFTQHCLGMRDFSMQQSLKDISKKIVIRCNGLPLAAKTLAGLLRGKNDP-RFSACSIAR--YGIYQKNY--------EFH 512 (1113)
Q Consensus 444 LF~~~af~~~~~~~~~~l~~i~~~I~~~c~GlPLAi~~ig~~L~~~~~~-cfly~~~~~--~~~fp~~~--------~i~ 512 (1113)
++...+ +...... +.. ..|++.|+|.|+++..++..+...... -.. ..... ...+.... ...
T Consensus 217 ~l~~~~-~~~~~~~-~~~----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~l~ 289 (357)
T 2fna_A 217 FLRRGF-QEADIDF-KDY----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAI-NQTLEYAKKLILKEFENFLHGREIAR 289 (357)
T ss_dssp HHHHHH-HHHTCCC-CCH----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHH-HHcCCCC-CcH----HHHHHHhCCCHHHHHHHHHHHccccchHHHH-HHHHHHHHHHHHHHHHHHhhcccccc
Confidence 998753 2111111 111 789999999999999988765422110 000 00000 00000000 111
Q ss_pred hhhHHHHHHHHcCCCccCCchhhH-------------HHHHHHHHHHHHhCCCccccCCCCCcee-echHHHHH
Q 046764 513 EEEEVTLLWMAEGFPYHIDTKEEI-------------QDLGHKFFHELYSRSSFQQSSSDPCRFL-MHDLINDL 572 (1113)
Q Consensus 513 ~~~~Li~~Wiaegfi~~~~~~~~~-------------e~~~~~~~~~Lv~rsli~~~~~~~~~~~-mHdlv~d~ 572 (1113)
.....+-..+|.|- ....+ ......+++.|+++++|.... ..|+ .|.+++++
T Consensus 290 ~~~~~~l~~la~g~-----~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~---~~y~f~~~~~~~~ 355 (357)
T 2fna_A 290 KRYLNIMRTLSKCG-----KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEG---EKYCPSEPLISLA 355 (357)
T ss_dssp HHHHHHHHHHTTCB-----CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESS---SCEEESSHHHHHH
T ss_pred HHHHHHHHHHHcCC-----CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecC---CEEEecCHHHHHh
Confidence 11344556677642 11111 123467899999999998653 3466 57787765
No 157
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.17 E-value=0.00018 Score=81.58 Aligned_cols=84 Identities=24% Similarity=0.269 Sum_probs=49.6
Q ss_pred CCCCCcceeeccccCc--C-ccccc-CCCCcccccCCCccEEEEecCcCcccccCCCCCCccEEEEecccCcccc---C-
Q 046764 787 IPFPSLETLRFENMQE--R-EDWIP-YSSSQEVEVFPNLRDLFLLRCSKLLGTLPKHLPSLQKLVIQRCEKLLVD---L- 858 (1113)
Q Consensus 787 ~~~~~L~~L~L~~~~~--l-~~~~~-~~~~~~~~~~~~L~~L~L~~c~~L~~~lp~~l~~L~~L~L~~c~~L~~~---l- 858 (1113)
..|++|+.|.+.+... . ..|.. .........+|+|+.|.|++|..+. .-+-..++|++|++..|..-... +
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l~~~~~~~L~~L~L~~~~l~~~~l~~l~ 214 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-IGKKPRPNLKSLEIISGGLPDSVVEDIL 214 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-CCSCBCTTCSEEEEECSBCCHHHHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-eccccCCCCcEEEEecCCCChHHHHHHH
Confidence 4578888888865321 0 01211 0011223567999999998874332 22224789999999877532211 1
Q ss_pred -CCCCcccEEEEec
Q 046764 859 -PSLPSLNELKLGG 871 (1113)
Q Consensus 859 -~~l~~L~~L~L~~ 871 (1113)
..+|+|+.|+|+.
T Consensus 215 ~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 215 GSDLPNLEKLVLYV 228 (362)
T ss_dssp HSBCTTCCEEEEEC
T ss_pred HccCCCCcEEEEec
Confidence 2588999999864
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.09 E-value=0.00035 Score=69.84 Aligned_cols=40 Identities=5% Similarity=0.061 Sum_probs=27.6
Q ss_pred CCCceEEEcccCCCcccccccCCCCCcccCCCCccEEEeecCCCCcc
Q 046764 919 LSLKDLSIAFCDNLRTLVEEEGIPKGSRKYSSHLECLHILSCPSPTS 965 (1113)
Q Consensus 919 ~~L~~L~Ls~c~~L~~l~~~~~lp~~l~~~l~~L~~L~L~~c~~L~~ 965 (1113)
..|+.|++++|. ++.. .... + ..+++|++|++++|..+++
T Consensus 61 ~~L~~LDLs~~~-Itd~-GL~~----L-~~~~~L~~L~L~~C~~ItD 100 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSI-GFDH----M-EGLQYVEKIRLCKCHYIED 100 (176)
T ss_dssp CCEEEEEEESCC-CCGG-GGGG----G-TTCSCCCEEEEESCTTCCH
T ss_pred ceEeEEeCcCCC-ccHH-HHHH----h-cCCCCCCEEEeCCCCccCH
Confidence 468888888887 5543 1111 2 3678888888888887765
No 159
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.94 E-value=0.0032 Score=65.46 Aligned_cols=142 Identities=11% Similarity=0.028 Sum_probs=89.9
Q ss_pred EEEEEeccc----chhhhcccc----c-------CCcCCCCCHHHHHHHHHHHh------cCcEEEEEEecCCCCChhhh
Q 046764 338 LLSLSIMMP----NIIRFIATA----D-------QPVNGTDELGLLQEKLKNQM------SGKKFLLVLGDVWNENYSDW 396 (1113)
Q Consensus 338 vi~I~G~gG----tLA~~vi~~----~-------~~~~~~~~~~~l~~~l~~~L------~~kr~LiVLDDv~~~~~~~w 396 (1113)
.+.|+|..| ++|+.+... . .......+...+...+.... .+++.+||+||++......+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~ 119 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQ 119 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHHHH
Confidence 367899988 777766110 0 00012334455555555544 26789999999987755556
Q ss_pred hhhcccccCCCCCcEEEEecCChhh-Hhh-hCCCceEecCCCCHHHHHHHHHhcccCCCCCCCchhHHHHHHHHHHHhCC
Q 046764 397 DSLSLPFEAGAPGSQIIVTTRNRDV-AAI-MGSVRDYPLKESTKDDCLQVFTQHCLGMRDFSMQQSLKDISKKIVIRCNG 474 (1113)
Q Consensus 397 ~~l~~~l~~~~~gSrIivTTR~~~v-a~~-~~~~~~~~l~~L~~~~s~~LF~~~af~~~~~~~~~~l~~i~~~I~~~c~G 474 (1113)
+.+...+.....+.++|+||+...- ... ......+++.+++.++...++.+.+...+.. .. .+....+++.++|
T Consensus 120 ~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~-~~---~~~~~~l~~~~~g 195 (226)
T 2chg_A 120 AALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK-IT---EDGLEALIYISGG 195 (226)
T ss_dssp HHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC-BC---HHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCC-CC---HHHHHHHHHHcCC
Confidence 6666666555567889998876531 111 1222479999999999999998876322211 11 2456778899999
Q ss_pred ChHHHHHHH
Q 046764 475 LPLAAKTLA 483 (1113)
Q Consensus 475 lPLAi~~ig 483 (1113)
.|..+..+.
T Consensus 196 ~~r~l~~~l 204 (226)
T 2chg_A 196 DFRKAINAL 204 (226)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 998655443
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.83 E-value=0.00062 Score=68.10 Aligned_cols=82 Identities=13% Similarity=0.121 Sum_probs=61.3
Q ss_pred CCcceeeccccCcCcccccCCCCcccccCCCccEEEEecCcCcccc----cCCC---CCCccEEEEecccCccc----cC
Q 046764 790 PSLETLRFENMQEREDWIPYSSSQEVEVFPNLRDLFLLRCSKLLGT----LPKH---LPSLQKLVIQRCEKLLV----DL 858 (1113)
Q Consensus 790 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~~----lp~~---l~~L~~L~L~~c~~L~~----~l 858 (1113)
.+|+.|++++|. +.... -.....+++|+.|+|++|..+++. +... .++|++|+|++|..++. .+
T Consensus 61 ~~L~~LDLs~~~-Itd~G----L~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L 135 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIG----FDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL 135 (176)
T ss_dssp CCEEEEEEESCC-CCGGG----GGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG
T ss_pred ceEeEEeCcCCC-ccHHH----HHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH
Confidence 369999999987 44322 123468999999999999877642 2221 24799999999987764 45
Q ss_pred CCCCcccEEEEeccCCCC
Q 046764 859 PSLPSLNELKLGGCKKGG 876 (1113)
Q Consensus 859 ~~l~~L~~L~L~~~~~~~ 876 (1113)
..+++|+.|+|++|+..+
T Consensus 136 ~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 136 HHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp GGCTTCCEEEEESCTTCC
T ss_pred hcCCCCCEEECCCCCCCC
Confidence 568999999999998765
No 161
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.76 E-value=0.00043 Score=70.56 Aligned_cols=63 Identities=11% Similarity=0.079 Sum_probs=35.4
Q ss_pred CCCccccEEecCCC-CCcc-----cChhhhccccccEEeccccccc----ccccccccCCCcceEEEcCCcee
Q 046764 606 GDLKHLRHLDLSET-DIQI-----LPESVNTLYNLRMLMLQKCNQL----EKMCSDMGNLLKLHHLDNFDFCC 668 (1113)
Q Consensus 606 ~~L~~Lr~L~Ls~~-~i~~-----LP~~i~~L~~L~~LdL~~c~~l----~~LP~~i~~L~~L~~L~L~~~~i 668 (1113)
...+.|++|+|++| .+.. +...+...++|++|+|++|..- ..+...+...++|++|++++|.+
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 44556666777766 6542 3445555666777777765321 12333444456677777766644
No 162
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.66 E-value=0.001 Score=71.65 Aligned_cols=63 Identities=22% Similarity=0.229 Sum_probs=49.5
Q ss_pred CCCccccEEecCCCCCccc---ChhhhccccccEEecccccccccccccccCCC--cceEEEcCCceecc
Q 046764 606 GDLKHLRHLDLSETDIQIL---PESVNTLYNLRMLMLQKCNQLEKMCSDMGNLL--KLHHLDNFDFCCWK 670 (1113)
Q Consensus 606 ~~L~~Lr~L~Ls~~~i~~L---P~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~--~L~~L~L~~~~i~~ 670 (1113)
.++++|+.|+|++|+|+.+ |..++.+++|++|+|++| .+..+ ..+..+. +|++|++++|.+..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGGGGGTTSCCSEEECTTSTTGG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhhhhcccCCcceEEccCCcCcc
Confidence 4578899999999998865 467889999999999984 56655 3455555 99999999986543
No 163
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.57 E-value=0.00093 Score=68.05 Aligned_cols=79 Identities=10% Similarity=0.014 Sum_probs=62.7
Q ss_pred CCCCCeeEEccCCc-C-----------CCCCCccccEEecCCCCCcc-----cChhhhccccccEEeccccccccc----
Q 046764 589 FEFENLQTFLPTTV-S-----------HGGDLKHLRHLDLSETDIQI-----LPESVNTLYNLRMLMLQKCNQLEK---- 647 (1113)
Q Consensus 589 ~~l~~Lr~L~~~~~-~-----------~i~~L~~Lr~L~Ls~~~i~~-----LP~~i~~L~~L~~LdL~~c~~l~~---- 647 (1113)
...+.|++|.+.++ . .+...++|++|+|++|.|.. +...+...++|++|+|++|. +..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~~ 111 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGIL 111 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHHH
Confidence 45688899998887 4 56678899999999999873 45667778899999999964 433
Q ss_pred -ccccccCCCcceEEEc--CCcee
Q 046764 648 -MCSDMGNLLKLHHLDN--FDFCC 668 (1113)
Q Consensus 648 -LP~~i~~L~~L~~L~L--~~~~i 668 (1113)
+...+...++|++|++ ++|.+
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i 135 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPL 135 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCC
T ss_pred HHHHHHHhCCCceEEEecCCCCCC
Confidence 5667778889999999 76754
No 164
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.48 E-value=0.012 Score=65.38 Aligned_cols=142 Identities=12% Similarity=0.128 Sum_probs=89.6
Q ss_pred EEEEeccc----chhhhcccc-----------cCCcCCCCCHHHHHHHHHHHh-------cCcEEEEEEecCCCCChhhh
Q 046764 339 LSLSIMMP----NIIRFIATA-----------DQPVNGTDELGLLQEKLKNQM-------SGKKFLLVLGDVWNENYSDW 396 (1113)
Q Consensus 339 i~I~G~gG----tLA~~vi~~-----------~~~~~~~~~~~~l~~~l~~~L-------~~kr~LiVLDDv~~~~~~~w 396 (1113)
+-++|..| |+|+.+... ..+..+....+.+.+.+.... .+++.+||+||++......+
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~ 124 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQ 124 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHH
Confidence 77899998 777766111 000022234555555555443 45689999999988655666
Q ss_pred hhhcccccCCCCCcEEEEecCChh-hHhh-hCCCceEecCCCCHHHHHHHHHhcccCCCCCCCchhHHHHHHHHHHHhCC
Q 046764 397 DSLSLPFEAGAPGSQIIVTTRNRD-VAAI-MGSVRDYPLKESTKDDCLQVFTQHCLGMRDFSMQQSLKDISKKIVIRCNG 474 (1113)
Q Consensus 397 ~~l~~~l~~~~~gSrIivTTR~~~-va~~-~~~~~~~~l~~L~~~~s~~LF~~~af~~~~~~~~~~l~~i~~~I~~~c~G 474 (1113)
+.+...+.....++++|+||+... +... ......+++.+++.++..+++...+...+- ... .+....|++.|+|
T Consensus 125 ~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~-~~~---~~~~~~l~~~~~G 200 (323)
T 1sxj_B 125 QALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDV-KYT---NDGLEAIIFTAEG 200 (323)
T ss_dssp HTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-CBC---HHHHHHHHHHHTT
T ss_pred HHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCC
Confidence 666666655556788888887643 2111 122358999999999999999887532211 111 2456788999999
Q ss_pred ChH-HHHHHHh
Q 046764 475 LPL-AAKTLAG 484 (1113)
Q Consensus 475 lPL-Ai~~ig~ 484 (1113)
.|. |+..+..
T Consensus 201 ~~r~a~~~l~~ 211 (323)
T 1sxj_B 201 DMRQAINNLQS 211 (323)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 995 4444443
No 165
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.46 E-value=0.0061 Score=68.48 Aligned_cols=200 Identities=11% Similarity=0.106 Sum_probs=109.2
Q ss_pred CHHHHHHHHHHHhcC-cEEEEEEecCCCCCh-------hhhhhhcccccCCCCCcEEEEecCChhhHhhh----------
Q 046764 364 ELGLLQEKLKNQMSG-KKFLLVLGDVWNENY-------SDWDSLSLPFEAGAPGSQIIVTTRNRDVAAIM---------- 425 (1113)
Q Consensus 364 ~~~~l~~~l~~~L~~-kr~LiVLDDv~~~~~-------~~w~~l~~~l~~~~~gSrIivTTR~~~va~~~---------- 425 (1113)
+..++.+.+.+..+. ++++|||||++..+. ..+..+...... .++.++|+|++...+...+
T Consensus 112 ~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l 190 (350)
T 2qen_A 112 SLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPL 190 (350)
T ss_dssp CHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTT
T ss_pred hHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCcc
Confidence 445566666666643 389999999976421 123333322222 2478899998876542211
Q ss_pred -CC-CceEecCCCCHHHHHHHHHhcccCCCCCCCchhHHHHHHHHHHHhCCChHHHHHHHhhhcCC-CCccc---ccccc
Q 046764 426 -GS-VRDYPLKESTKDDCLQVFTQHCLGMRDFSMQQSLKDISKKIVIRCNGLPLAAKTLAGLLRGK-NDPRF---SACSI 499 (1113)
Q Consensus 426 -~~-~~~~~l~~L~~~~s~~LF~~~af~~~~~~~~~~l~~i~~~I~~~c~GlPLAi~~ig~~L~~~-~~~cf---ly~~~ 499 (1113)
+. ...+++.+|+.+|+.+++.... +....... .+.+..|++.|+|.|+++..++..+... ...-. .+-..
T Consensus 191 ~~~~~~~i~l~pl~~~e~~~~l~~~~-~~~~~~~~---~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~ 266 (350)
T 2qen_A 191 YGRIAGEVLVKPFDKDTSVEFLKRGF-REVNLDVP---ENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVA 266 (350)
T ss_dssp TTCCCEEEECCCCCHHHHHHHHHHHH-HTTTCCCC---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccCccceeeCCCCCHHHHHHHHHHHH-HHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHH
Confidence 11 2479999999999999987653 22111111 2467889999999999999888654221 10000 00000
Q ss_pred cccccCcCCc-cc----chhhHHHHHHHHcCCCccCCchh--------hHHHHHHHHHHHHHhCCCccccCCCCCceee-
Q 046764 500 ARYGIYQKNY-EF----HEEEEVTLLWMAEGFPYHIDTKE--------EIQDLGHKFFHELYSRSSFQQSSSDPCRFLM- 565 (1113)
Q Consensus 500 ~~~~~fp~~~-~i----~~~~~Li~~Wiaegfi~~~~~~~--------~~e~~~~~~~~~Lv~rsli~~~~~~~~~~~m- 565 (1113)
...+..+. .. .. ..-+-..+|.|-.....-.. ........+++.|.+.++|.... ..|++
T Consensus 267 --~~~~~~~l~~l~~~~~~-~~~~l~~la~g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~---~~y~~~ 340 (350)
T 2qen_A 267 --KGLIMGELEELRRRSPR-YVDILRAIALGYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEED---NTYKIA 340 (350)
T ss_dssp --HHHHHHHHHHHHHHCHH-HHHHHHHHHTTCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEET---TEEEES
T ss_pred --HHHHHHHHHHHHhCChh-HHHHHHHHHhCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEecC---CEEEEe
Confidence 00000000 00 22 33344567765321100000 01233467899999999998753 34655
Q ss_pred chHHHHHHH
Q 046764 566 HDLINDLAQ 574 (1113)
Q Consensus 566 Hdlv~d~~~ 574 (1113)
|.+++++.+
T Consensus 341 ~p~~~~~~~ 349 (350)
T 2qen_A 341 DPVVATVLR 349 (350)
T ss_dssp SHHHHHHHT
T ss_pred cHHHHHHHc
Confidence 667776543
No 166
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.36 E-value=0.0069 Score=69.90 Aligned_cols=114 Identities=11% Similarity=-0.004 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhc--CcEEEEEEecCCCCC------hhhhhhhcccccCC---C--CCcEEEEecCChhhHhhhC-----
Q 046764 365 LGLLQEKLKNQMS--GKKFLLVLGDVWNEN------YSDWDSLSLPFEAG---A--PGSQIIVTTRNRDVAAIMG----- 426 (1113)
Q Consensus 365 ~~~l~~~l~~~L~--~kr~LiVLDDv~~~~------~~~w~~l~~~l~~~---~--~gSrIivTTR~~~va~~~~----- 426 (1113)
...+...+.+.+. +++++|||||++... .+.+..+...+... + .+..||+||+..++...+.
T Consensus 122 ~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~ 201 (412)
T 1w5s_A 122 ALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQ 201 (412)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcch
Confidence 3455566666664 789999999997631 13333333333211 2 3455888887655432111
Q ss_pred ----CCceEecCCCCHHHHHHHHHhcc---cCCCCCCCchhHHHHHHHHHHHhC------CChHHHHHHH
Q 046764 427 ----SVRDYPLKESTKDDCLQVFTQHC---LGMRDFSMQQSLKDISKKIVIRCN------GLPLAAKTLA 483 (1113)
Q Consensus 427 ----~~~~~~l~~L~~~~s~~LF~~~a---f~~~~~~~~~~l~~i~~~I~~~c~------GlPLAi~~ig 483 (1113)
....+++++++.++++++|..++ +... .. -.+....|++.|+ |.|..+..+.
T Consensus 202 ~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~--~~---~~~~~~~i~~~~~~~~~~~G~p~~~~~l~ 266 (412)
T 1w5s_A 202 VESQIGFKLHLPAYKSRELYTILEQRAELGLRDT--VW---EPRHLELISDVYGEDKGGDGSARRAIVAL 266 (412)
T ss_dssp HHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTT--SC---CHHHHHHHHHHHCGGGTSCCCHHHHHHHH
T ss_pred hhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCC--CC---ChHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 12339999999999999997653 2211 11 1356778889999 9996554443
No 167
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.17 E-value=0.0081 Score=66.85 Aligned_cols=144 Identities=17% Similarity=0.055 Sum_probs=81.0
Q ss_pred EEEEEEeccc----chhhhcccccC------CcCCCCCHHHHHHHHHHHhcCcEEEEEEecCCCCChhhhhhhcccccCC
Q 046764 337 HLLSLSIMMP----NIIRFIATADQ------PVNGTDELGLLQEKLKNQMSGKKFLLVLGDVWNENYSDWDSLSLPFEAG 406 (1113)
Q Consensus 337 ~vi~I~G~gG----tLA~~vi~~~~------~~~~~~~~~~l~~~l~~~L~~kr~LiVLDDv~~~~~~~w~~l~~~l~~~ 406 (1113)
..+-|+|..| |+|+.+..... .........++...+...+ .+..+|+|||+........+.+...+...
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~ 117 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDF 117 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSHHHHHHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHS
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCChHHHHHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhh
Confidence 3456889888 88888711100 0011223344444333322 35568999999876543444333222111
Q ss_pred ------------------CCCcEEEEecCChh-hHhhh--CCCceEecCCCCHHHHHHHHHhcccCCCCCCCchhHHHHH
Q 046764 407 ------------------APGSQIIVTTRNRD-VAAIM--GSVRDYPLKESTKDDCLQVFTQHCLGMRDFSMQQSLKDIS 465 (1113)
Q Consensus 407 ------------------~~gSrIivTTR~~~-va~~~--~~~~~~~l~~L~~~~s~~LF~~~af~~~~~~~~~~l~~i~ 465 (1113)
.++.++|.||.... +.... ....++.+.+++.++...++...+..... ... .+..
T Consensus 118 ~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~-~~~---~~~~ 193 (324)
T 1hqc_A 118 VMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV-RIT---EEAA 193 (324)
T ss_dssp EEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC-CCC---HHHH
T ss_pred hhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC-CCC---HHHH
Confidence 12356666666432 21111 11257999999999999888877643221 111 3567
Q ss_pred HHHHHHhCCChHHHHHHHhh
Q 046764 466 KKIVIRCNGLPLAAKTLAGL 485 (1113)
Q Consensus 466 ~~I~~~c~GlPLAi~~ig~~ 485 (1113)
..+++.|+|.|-.+..+...
T Consensus 194 ~~l~~~~~G~~r~l~~~l~~ 213 (324)
T 1hqc_A 194 LEIGRRSRGTMRVAKRLFRR 213 (324)
T ss_dssp HHHHHHSCSCHHHHHHHHHH
T ss_pred HHHHHHccCCHHHHHHHHHH
Confidence 78889999999877765544
No 168
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.12 E-value=0.058 Score=61.76 Aligned_cols=31 Identities=13% Similarity=0.280 Sum_probs=20.7
Q ss_pred CCCccEEEEeecCCCCccc-ccCCCCCCcCeeee
Q 046764 1018 NTSLQVITVFRCKNLKTLP-DGLHKLNNLQAFTI 1050 (1113)
Q Consensus 1018 l~sL~~L~Ls~c~~l~~lP-~~l~~L~sL~~L~L 1050 (1113)
+.+|+.+.|.. .++.++ ..+.++++|+.+++
T Consensus 333 C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 333 CEQLERIAIPS--SVTKIPESAFSNCTALNNIEY 364 (394)
T ss_dssp CTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEE
T ss_pred CCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEE
Confidence 46777777753 356663 45677777887777
No 169
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.02 E-value=0.26 Score=56.24 Aligned_cols=63 Identities=16% Similarity=0.338 Sum_probs=45.6
Q ss_pred CccccCCC----CCCccEEEEeecCCCCccc-ccCCCCCCcCeeeeccccccccCCCC-CCCCcCcEEEeC
Q 046764 1010 KWESIADN----NTSLQVITVFRCKNLKTLP-DGLHKLNNLQAFTICKNLVSFPKGGL-PSTQLRDPDITG 1074 (1113)
Q Consensus 1010 ~L~~lp~~----l~sL~~L~Ls~c~~l~~lP-~~l~~L~sL~~L~Lcn~L~slp~~~~-~~~sL~~L~l~~ 1074 (1113)
.++.++.. +.+|+.++|.. .++.+. ..+.++++|+.+.|-+++++++...+ .+++|+.+++.+
T Consensus 298 ~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 298 RITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPSSVTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECTTCCBCCGGGGTTCTTCCEEEESS
T ss_pred cccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECcccCEEhHhHhhCCCCCCEEEECC
Confidence 44555554 68899999875 477774 46888999999999555788876555 456788887764
No 170
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.46 E-value=0.0074 Score=64.87 Aligned_cols=73 Identities=16% Similarity=0.186 Sum_probs=56.1
Q ss_pred CCCCeeEEccCCcC-----C----CCCCccccEEecCCCCCcccChhhhccc--cccEEecccccccccccc-------c
Q 046764 590 EFENLQTFLPTTVS-----H----GGDLKHLRHLDLSETDIQILPESVNTLY--NLRMLMLQKCNQLEKMCS-------D 651 (1113)
Q Consensus 590 ~l~~Lr~L~~~~~~-----~----i~~L~~Lr~L~Ls~~~i~~LP~~i~~L~--~L~~LdL~~c~~l~~LP~-------~ 651 (1113)
.+++|++|.+.++. . ++.+++|++|+|++|.|+.+ ..+..+. +|++|+|++|.....+|. .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 46789999988876 2 23789999999999999987 4466666 999999999754444552 3
Q ss_pred ccCCCcceEEEc
Q 046764 652 MGNLLKLHHLDN 663 (1113)
Q Consensus 652 i~~L~~L~~L~L 663 (1113)
+..+++|+.||-
T Consensus 247 l~~~P~L~~LDg 258 (267)
T 3rw6_A 247 RERFPKLLRLDG 258 (267)
T ss_dssp HHHCTTCCEESS
T ss_pred HHHCcccCeECC
Confidence 578889998873
No 171
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.89 E-value=0.1 Score=59.22 Aligned_cols=115 Identities=12% Similarity=0.068 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhcCcEEEEEEecCCCCChhhhhhh-cccccCCCCCcEEEEecCChhhH----hhh--CCCceEecCCCCH
Q 046764 366 GLLQEKLKNQMSGKKFLLVLGDVWNENYSDWDSL-SLPFEAGAPGSQIIVTTRNRDVA----AIM--GSVRDYPLKESTK 438 (1113)
Q Consensus 366 ~~l~~~l~~~L~~kr~LiVLDDv~~~~~~~w~~l-~~~l~~~~~gSrIivTTR~~~va----~~~--~~~~~~~l~~L~~ 438 (1113)
..+...+.+.+..++.+|||||++......+... ...+.....+.+||+||+..... ... .....+++++++.
T Consensus 120 ~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~ 199 (384)
T 2qby_B 120 GEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDA 199 (384)
T ss_dssp HHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCH
T ss_pred HHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCH
Confidence 4455666677777666999999966421111122 22222111678899999875321 111 1123899999999
Q ss_pred HHHHHHHHhcccC-CCCCCCchhHHHHHHHHHHHhC---CChH-HHHHHH
Q 046764 439 DDCLQVFTQHCLG-MRDFSMQQSLKDISKKIVIRCN---GLPL-AAKTLA 483 (1113)
Q Consensus 439 ~~s~~LF~~~af~-~~~~~~~~~l~~i~~~I~~~c~---GlPL-Ai~~ig 483 (1113)
++..+++..++-. .......+ +....|++.|+ |.|. |+..+.
T Consensus 200 ~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~ 246 (384)
T 2qby_B 200 EQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLF 246 (384)
T ss_dssp HHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHH
Confidence 9999999987421 11111112 34566777777 8776 444433
No 172
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.62 E-value=0.061 Score=59.53 Aligned_cols=103 Identities=8% Similarity=0.033 Sum_probs=69.8
Q ss_pred CcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEecCChh-hHhhh-CCCceEecCCCCHHHHHHHHHhcccCCCCC
Q 046764 378 GKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTTRNRD-VAAIM-GSVRDYPLKESTKDDCLQVFTQHCLGMRDF 455 (1113)
Q Consensus 378 ~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTTR~~~-va~~~-~~~~~~~l~~L~~~~s~~LF~~~af~~~~~ 455 (1113)
+++.+||+||++......++.+...+.....++++|+||.... +.... .....+++.+++.++...++...+...+-
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~- 187 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL- 187 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTC-
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCC-
Confidence 6788999999987765667777666655556788888887643 11111 11247899999999999988877543221
Q ss_pred CCchhHHHHHHHHHHHhCCChHHHHHHHh
Q 046764 456 SMQQSLKDISKKIVIRCNGLPLAAKTLAG 484 (1113)
Q Consensus 456 ~~~~~l~~i~~~I~~~c~GlPLAi~~ig~ 484 (1113)
... .+....|++.++|.|-.+..+..
T Consensus 188 ~~~---~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 188 ELT---EEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp EEC---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCC---HHHHHHHHHHCCCCHHHHHHHHH
Confidence 111 24567788899999986655443
No 173
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.46 E-value=5.1 Score=44.90 Aligned_cols=54 Identities=13% Similarity=0.106 Sum_probs=30.9
Q ss_pred CCCccEEEEeecCCCCccc-ccCCCCCCcCeeeeccccccccCCCC-CCCCcCcEEE
Q 046764 1018 NTSLQVITVFRCKNLKTLP-DGLHKLNNLQAFTICKNLVSFPKGGL-PSTQLRDPDI 1072 (1113)
Q Consensus 1018 l~sL~~L~Ls~c~~l~~lP-~~l~~L~sL~~L~Lcn~L~slp~~~~-~~~sL~~L~l 1072 (1113)
+++|+.+.+.++ .++.++ ..+.++++|+.+.|-++++.++...+ .+++|+++.+
T Consensus 285 c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 285 CSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPTALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp CTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCCCCC
T ss_pred cccccccccccc-ccceehhhhhcCCCCCCEEEcCccccEEHHHHhhCCCCCCEEEE
Confidence 567777777653 455553 35666777777777445666655444 2334444444
No 174
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.12 E-value=0.16 Score=57.63 Aligned_cols=113 Identities=13% Similarity=0.087 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHh--cCcEEEEEEecCCCCChh--hhhhhccccc--CC---CCCcEEEEecCChh--------hHhhhCC
Q 046764 365 LGLLQEKLKNQM--SGKKFLLVLGDVWNENYS--DWDSLSLPFE--AG---APGSQIIVTTRNRD--------VAAIMGS 427 (1113)
Q Consensus 365 ~~~l~~~l~~~L--~~kr~LiVLDDv~~~~~~--~w~~l~~~l~--~~---~~gSrIivTTR~~~--------va~~~~~ 427 (1113)
..++...+.+.+ .+++.+|||||++..... ..+.+...+. .. ..+..+|.||+... +...+..
T Consensus 114 ~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~ 193 (387)
T 2v1u_A 114 VGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGE 193 (387)
T ss_dssp HHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTS
T ss_pred HHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCC
Confidence 445555666666 456899999999765211 2222222221 11 34567888887653 2222221
Q ss_pred CceEecCCCCHHHHHHHHHhccc---CCCCCCCchhHHHHHHHHHHHhC---CCh-HHHHHHH
Q 046764 428 VRDYPLKESTKDDCLQVFTQHCL---GMRDFSMQQSLKDISKKIVIRCN---GLP-LAAKTLA 483 (1113)
Q Consensus 428 ~~~~~l~~L~~~~s~~LF~~~af---~~~~~~~~~~l~~i~~~I~~~c~---GlP-LAi~~ig 483 (1113)
..+.+++++.++...++...+- .... ..+ +....++++++ |.| .|+..+.
T Consensus 194 -~~i~l~~l~~~~~~~il~~~~~~~~~~~~--~~~---~~~~~l~~~~~~~~G~~r~~~~~l~ 250 (387)
T 2v1u_A 194 -VELVFPPYTAPQLRDILETRAEEAFNPGV--LDP---DVVPLCAALAAREHGDARRALDLLR 250 (387)
T ss_dssp -EECCBCCCCHHHHHHHHHHHHHHHBCTTT--BCS---SHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred -eEEeeCCCCHHHHHHHHHHHHHhhccCCC--CCH---HHHHHHHHHHHHhccCHHHHHHHHH
Confidence 4789999999999999988742 2221 112 34567777787 998 4444433
No 175
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=93.59 E-value=1 Score=50.75 Aligned_cols=59 Identities=7% Similarity=0.024 Sum_probs=38.3
Q ss_pred CCCCCccccEEecCCCCCcccC-hhhhccccccEEecccccccccccccccCCCcceEEEcCCc
Q 046764 604 HGGDLKHLRHLDLSETDIQILP-ESVNTLYNLRMLMLQKCNQLEKMCSDMGNLLKLHHLDNFDF 666 (1113)
Q Consensus 604 ~i~~L~~Lr~L~Ls~~~i~~LP-~~i~~L~~L~~LdL~~c~~l~~LP~~i~~L~~L~~L~L~~~ 666 (1113)
.|.++.+|+.++|..+ ++.++ ..|.+. +|+.+.+.. .+..++...-.-.+|+.+.+.++
T Consensus 64 aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~--~l~~I~~~aF~~~~L~~i~lp~~ 123 (379)
T 4h09_A 64 NFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME--RVKKFGDYVFQGTDLDDFEFPGA 123 (379)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT--TCCEECTTTTTTCCCSEEECCTT
T ss_pred HhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc--eeeEeccceeccCCcccccCCCc
Confidence 7888888888888644 77774 456665 577766653 45566554433457777777654
No 176
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=93.07 E-value=0.47 Score=52.01 Aligned_cols=101 Identities=10% Similarity=0.046 Sum_probs=67.5
Q ss_pred CcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEecCChh-hHhh-hCCCceEecCCCCHHHHHHHHHhcccCCCCC
Q 046764 378 GKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTTRNRD-VAAI-MGSVRDYPLKESTKDDCLQVFTQHCLGMRDF 455 (1113)
Q Consensus 378 ~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTTR~~~-va~~-~~~~~~~~l~~L~~~~s~~LF~~~af~~~~~ 455 (1113)
+++.+||+||+........+.+...+.....+.++|+||.... +... ......+++.+++.++....+...+-..+-
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~- 179 (319)
T 2chq_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGV- 179 (319)
T ss_dssp CCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCC-
T ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCC-
Confidence 6688999999977655556667666655556778888876543 2111 122258999999999999888876533221
Q ss_pred CCchhHHHHHHHHHHHhCCChHHHHHH
Q 046764 456 SMQQSLKDISKKIVIRCNGLPLAAKTL 482 (1113)
Q Consensus 456 ~~~~~l~~i~~~I~~~c~GlPLAi~~i 482 (1113)
... .+....+++.++|.+-.+...
T Consensus 180 ~i~---~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 180 KIT---EDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp CBC---HHHHHHHHHTTTTCHHHHHHH
T ss_pred CCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 111 245677888899998765543
No 177
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.96 E-value=0.42 Score=53.95 Aligned_cols=113 Identities=12% Similarity=0.060 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhc--CcEEEEEEecCCCCC----hhhhhhhcccccC-CCCCcEEEEecCChhhHhhhC-------CCce
Q 046764 365 LGLLQEKLKNQMS--GKKFLLVLGDVWNEN----YSDWDSLSLPFEA-GAPGSQIIVTTRNRDVAAIMG-------SVRD 430 (1113)
Q Consensus 365 ~~~l~~~l~~~L~--~kr~LiVLDDv~~~~----~~~w~~l~~~l~~-~~~gSrIivTTR~~~va~~~~-------~~~~ 430 (1113)
..++.+.+.+.+. +++.+||||+++... ...+..+...+.. ...+..+|+||+.......+. ....
T Consensus 112 ~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~ 191 (386)
T 2qby_A 112 IAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEE 191 (386)
T ss_dssp HHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEE
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCee
Confidence 4455566666664 458999999996531 1223333222211 233566788888664432221 1147
Q ss_pred EecCCCCHHHHHHHHHhcccCCC-CCCCchhHHHHHHHHHHHhC---CChHHHH
Q 046764 431 YPLKESTKDDCLQVFTQHCLGMR-DFSMQQSLKDISKKIVIRCN---GLPLAAK 480 (1113)
Q Consensus 431 ~~l~~L~~~~s~~LF~~~af~~~-~~~~~~~l~~i~~~I~~~c~---GlPLAi~ 480 (1113)
+++++++.++.++++...+-... .... -.++...+++.++ |.|..+.
T Consensus 192 i~l~~l~~~~~~~il~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~G~~r~~~ 242 (386)
T 2qby_A 192 IIFPPYNAEELEDILTKRAQMAFKPGVL---PDNVIKLCAALAAREHGDARRAL 242 (386)
T ss_dssp EEECCCCHHHHHHHHHHHHHHHBCSSCS---CHHHHHHHHHHHHHTTCCHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHhhccCCCC---CHHHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999987642111 1111 1345666777776 9887433
No 178
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.01 E-value=0.65 Score=52.49 Aligned_cols=113 Identities=15% Similarity=0.065 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHhc--CcEEEEEEecCCCCChhhhhhhcccccCC-C---CCcEEEEecCChhhHhhhC-------CCceE
Q 046764 365 LGLLQEKLKNQMS--GKKFLLVLGDVWNENYSDWDSLSLPFEAG-A---PGSQIIVTTRNRDVAAIMG-------SVRDY 431 (1113)
Q Consensus 365 ~~~l~~~l~~~L~--~kr~LiVLDDv~~~~~~~w~~l~~~l~~~-~---~gSrIivTTR~~~va~~~~-------~~~~~ 431 (1113)
...+.+.+.+.+. +++.+|||||++..+......+...+... . .+..||+||+..+...... ....+
T Consensus 109 ~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i 188 (389)
T 1fnn_A 109 RDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVI 188 (389)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceE
Confidence 3344444554443 56889999999776545555554444221 1 4667888887764433221 11379
Q ss_pred ecCCCCHHHHHHHHHhcccCCC-CCCCchhHHHHHHHHHHHh---------CCChHHHH
Q 046764 432 PLKESTKDDCLQVFTQHCLGMR-DFSMQQSLKDISKKIVIRC---------NGLPLAAK 480 (1113)
Q Consensus 432 ~l~~L~~~~s~~LF~~~af~~~-~~~~~~~l~~i~~~I~~~c---------~GlPLAi~ 480 (1113)
.+.+++.++..+++...+-... .... -.+....|++.+ +|.|-.+.
T Consensus 189 ~~~pl~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~G~~r~~~ 244 (389)
T 1fnn_A 189 RFSPYTKDQIFDILLDRAKAGLAEGSY---SEDILQMIADITGAQTPLDTNRGDARLAI 244 (389)
T ss_dssp ECCCCBHHHHHHHHHHHHHHHBCTTSS---CHHHHHHHHHHHSBSSTTCTTSCCHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHhhcCCCCC---CHHHHHHHHHHHhhcccCCCCCCcHHHHH
Confidence 9999999999999987752210 1111 135677888888 78764433
No 179
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=90.80 E-value=0.63 Score=52.31 Aligned_cols=103 Identities=10% Similarity=0.130 Sum_probs=67.6
Q ss_pred cCcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEecCChh-hHhh-hCCCceEecCCCCHHHHHHHHHhcccCCCC
Q 046764 377 SGKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTTRNRD-VAAI-MGSVRDYPLKESTKDDCLQVFTQHCLGMRD 454 (1113)
Q Consensus 377 ~~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTTR~~~-va~~-~~~~~~~~l~~L~~~~s~~LF~~~af~~~~ 454 (1113)
.+++.+||+||+...+...++.+...+.....+..+|++|.... +... ......+++.+++.++...++...+-..+
T Consensus 117 ~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~- 195 (373)
T 1jr3_A 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEH- 195 (373)
T ss_dssp SSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHT-
T ss_pred cCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcC-
Confidence 35678999999977655566666666554445677777776432 2111 12236899999999999988887642211
Q ss_pred CCCchhHHHHHHHHHHHhCCChHHHHHHH
Q 046764 455 FSMQQSLKDISKKIVIRCNGLPLAAKTLA 483 (1113)
Q Consensus 455 ~~~~~~l~~i~~~I~~~c~GlPLAi~~ig 483 (1113)
.... .+....|++.++|.|..+..+.
T Consensus 196 ~~~~---~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 196 IAHE---PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp CCBC---HHHHHHHHHHSSSCHHHHHHHH
T ss_pred CCCC---HHHHHHHHHHCCCCHHHHHHHH
Confidence 1111 2456788999999998776554
No 180
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=90.68 E-value=0.22 Score=47.04 Aligned_cols=54 Identities=17% Similarity=0.140 Sum_probs=42.2
Q ss_pred cEEecCCCCCc--ccChhhhccccccEEecccccccccccccc-cCCCcceEEEcCCcee
Q 046764 612 RHLDLSETDIQ--ILPESVNTLYNLRMLMLQKCNQLEKMCSDM-GNLLKLHHLDNFDFCC 668 (1113)
Q Consensus 612 r~L~Ls~~~i~--~LP~~i~~L~~L~~LdL~~c~~l~~LP~~i-~~L~~L~~L~L~~~~i 668 (1113)
.+++.++++++ .+|..+. .+|++|+|++ +.+..+|.++ ..+.+|++|+|++|..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCCe
Confidence 46788888888 8886543 3789999998 5788888654 7889999999998743
No 181
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=86.91 E-value=0.16 Score=53.12 Aligned_cols=101 Identities=13% Similarity=0.092 Sum_probs=58.9
Q ss_pred CcEEEEEEecCCCCChhh--hhhhcccccCC-CCC-cEEEEecCC---------hhhHhhhCCCceEecCCCCHHHHHHH
Q 046764 378 GKKFLLVLGDVWNENYSD--WDSLSLPFEAG-APG-SQIIVTTRN---------RDVAAIMGSVRDYPLKESTKDDCLQV 444 (1113)
Q Consensus 378 ~kr~LiVLDDv~~~~~~~--w~~l~~~l~~~-~~g-SrIivTTR~---------~~va~~~~~~~~~~l~~L~~~~s~~L 444 (1113)
.+..+||+||++...... .+.+...+... ..+ .+||+||+. ..+...+....++++.+++.++..++
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~ 182 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAA 182 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHH
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHH
Confidence 345689999997653222 22233222110 112 247777763 22333333336899999999999999
Q ss_pred HHhcccCCCCCCCchhHHHHHHHHHHHhCCChHHHHHH
Q 046764 445 FTQHCLGMRDFSMQQSLKDISKKIVIRCNGLPLAAKTL 482 (1113)
Q Consensus 445 F~~~af~~~~~~~~~~l~~i~~~I~~~c~GlPLAi~~i 482 (1113)
+...+...+ .... .+....+++.++|.+-.+..+
T Consensus 183 l~~~~~~~~-~~~~---~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 183 LQRRAAMRG-LQLP---EDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp HHHHHHHTT-CCCC---HHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHcC-CCCC---HHHHHHHHHHccCCHHHHHHH
Confidence 988763222 1111 355677888899988666543
No 182
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=86.60 E-value=0.82 Score=52.91 Aligned_cols=99 Identities=10% Similarity=0.010 Sum_probs=60.1
Q ss_pred cEEEEEEecCCCCCh--hhhhhhcccccC-CCCCcEEEEecCC---------hhhHhhhCCCceEecCCCCHHHHHHHHH
Q 046764 379 KKFLLVLGDVWNENY--SDWDSLSLPFEA-GAPGSQIIVTTRN---------RDVAAIMGSVRDYPLKESTKDDCLQVFT 446 (1113)
Q Consensus 379 kr~LiVLDDv~~~~~--~~w~~l~~~l~~-~~~gSrIivTTR~---------~~va~~~~~~~~~~l~~L~~~~s~~LF~ 446 (1113)
+.-+|+|||+..... ..-+.+...+.. ...|..||+||.. ..+...+....++.+++++.++-..++.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~ 273 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIAR 273 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHH
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHH
Confidence 567999999965421 112223222211 1346788888875 2344445445688999999999999998
Q ss_pred hcccCCCCCCCchhHHHHHHHHHHHhCCChHHHHH
Q 046764 447 QHCLGMRDFSMQQSLKDISKKIVIRCNGLPLAAKT 481 (1113)
Q Consensus 447 ~~af~~~~~~~~~~l~~i~~~I~~~c~GlPLAi~~ 481 (1113)
+.+-..+ ...++ ++...|++.+.|.+-.+..
T Consensus 274 ~~~~~~~-~~i~~---e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 274 KMLEIEH-GELPE---EVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp HHHHHHT-CCCCT---THHHHHHHHCCSCHHHHHH
T ss_pred HHHHHcC-CCCCH---HHHHHHHHhcCCCHHHHHH
Confidence 8763211 11112 3456677888887755443
No 183
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.12 E-value=4.1 Score=45.16 Aligned_cols=103 Identities=12% Similarity=0.101 Sum_probs=64.8
Q ss_pred cEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEecCCh-hhHhhh-CCCceEecCCCCHHHHHHHHHhcccCCCCCC
Q 046764 379 KKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTTRNR-DVAAIM-GSVRDYPLKESTKDDCLQVFTQHCLGMRDFS 456 (1113)
Q Consensus 379 kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTTR~~-~va~~~-~~~~~~~l~~L~~~~s~~LF~~~af~~~~~~ 456 (1113)
++-+++||++...+....+.+...+.....+.++|++|... .+.... .....+++++++.++....+...+-..+- .
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~-~ 212 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI-Q 212 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-E
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC-C
Confidence 55689999998865555555655554334567787777653 222211 22268999999999998888876532211 1
Q ss_pred CchhHHHHHHHHHHHhCCChHHHHHHHh
Q 046764 457 MQQSLKDISKKIVIRCNGLPLAAKTLAG 484 (1113)
Q Consensus 457 ~~~~l~~i~~~I~~~c~GlPLAi~~ig~ 484 (1113)
.. -.+....|++.++|-+-.+..+..
T Consensus 213 ~~--~~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 213 LE--TKDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp EC--CSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CC--cHHHHHHHHHHcCCCHHHHHHHHH
Confidence 11 024567788999998865554443
No 184
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=84.85 E-value=0.64 Score=43.75 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=30.0
Q ss_pred cccEEecCCCCCcccCh-hhhccccccEEecccc
Q 046764 610 HLRHLDLSETDIQILPE-SVNTLYNLRMLMLQKC 642 (1113)
Q Consensus 610 ~Lr~L~Ls~~~i~~LP~-~i~~L~~L~~LdL~~c 642 (1113)
+|++|+|++|+|+.+|. .|..+.+|++|+|++|
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 69999999999999965 5789999999999985
No 185
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.20 E-value=4.1 Score=45.11 Aligned_cols=102 Identities=8% Similarity=0.042 Sum_probs=63.8
Q ss_pred CcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEecCChh-hHhhh-CCCceEecCCCCHHHHHHHHHhcccCCCCC
Q 046764 378 GKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTTRNRD-VAAIM-GSVRDYPLKESTKDDCLQVFTQHCLGMRDF 455 (1113)
Q Consensus 378 ~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTTR~~~-va~~~-~~~~~~~l~~L~~~~s~~LF~~~af~~~~~ 455 (1113)
+++-+|++|++........+.+...+.......++|++|.... +.... .....+++.+++.++....+...+-..+ .
T Consensus 132 ~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~-~ 210 (353)
T 1sxj_D 132 PPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQEN-V 210 (353)
T ss_dssp CSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTT-C
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhC-C
Confidence 3456999999977654555555555544445567777765432 21111 1114789999999999888887653222 1
Q ss_pred CCchhHHHHHHHHHHHhCCChHHHHHHH
Q 046764 456 SMQQSLKDISKKIVIRCNGLPLAAKTLA 483 (1113)
Q Consensus 456 ~~~~~l~~i~~~I~~~c~GlPLAi~~ig 483 (1113)
... .+....|++.++|.|-.+..+.
T Consensus 211 ~i~---~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 211 KCD---DGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp CCC---HHHHHHHHHHTSSCHHHHHHHH
T ss_pred CCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 111 3567788999999997655443
No 186
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=84.09 E-value=0.49 Score=47.97 Aligned_cols=62 Identities=10% Similarity=0.036 Sum_probs=36.6
Q ss_pred CccccEEecCCC-CCc-----ccChhhhccccccEEeccccccc----ccccccccCCCcceEEEcCCceec
Q 046764 608 LKHLRHLDLSET-DIQ-----ILPESVNTLYNLRMLMLQKCNQL----EKMCSDMGNLLKLHHLDNFDFCCW 669 (1113)
Q Consensus 608 L~~Lr~L~Ls~~-~i~-----~LP~~i~~L~~L~~LdL~~c~~l----~~LP~~i~~L~~L~~L~L~~~~i~ 669 (1113)
-+.|+.|+|+++ .|. .+-+.+..-+.|+.|+|++|..- ..+-..+..=+.|++|+|++|.++
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 346677777764 554 23455666677888888775321 122233334466788888777553
No 187
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=82.49 E-value=4.5 Score=43.28 Aligned_cols=139 Identities=12% Similarity=0.075 Sum_probs=71.3
Q ss_pred EEEEEEeccc----chhhhc----------ccccCCcCC-CCC-HHHHHHHHHHHhcCcEEEEEEecCCCC---------
Q 046764 337 HLLSLSIMMP----NIIRFI----------ATADQPVNG-TDE-LGLLQEKLKNQMSGKKFLLVLGDVWNE--------- 391 (1113)
Q Consensus 337 ~vi~I~G~gG----tLA~~v----------i~~~~~~~~-~~~-~~~l~~~l~~~L~~kr~LiVLDDv~~~--------- 391 (1113)
+-+-|+|..| |+|+.+ +........ ... ...+...+......+..+|+|||+...
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~ 131 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALT 131 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccC
Confidence 4467899998 788877 111110001 111 122233333334456689999999542
Q ss_pred --Chhhhhhh---ccccc--CCCCCcEEEEecCChhhHh-----hhCCCceEecCCCCHHHHHHHHHhcccCCCCCCCch
Q 046764 392 --NYSDWDSL---SLPFE--AGAPGSQIIVTTRNRDVAA-----IMGSVRDYPLKESTKDDCLQVFTQHCLGMRDFSMQQ 459 (1113)
Q Consensus 392 --~~~~w~~l---~~~l~--~~~~gSrIivTTR~~~va~-----~~~~~~~~~l~~L~~~~s~~LF~~~af~~~~~~~~~ 459 (1113)
.......+ ...+. ....+..||.||...+... .......+.+++.+.++..+++...+.... .....
T Consensus 132 ~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~-~~~~~ 210 (285)
T 3h4m_A 132 GGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMN-LAEDV 210 (285)
T ss_dssp GGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSC-BCTTC
T ss_pred CccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCC-CCCcC
Confidence 00111112 11111 1234677888887543221 112234799999999999999988763322 11112
Q ss_pred hHHHHHHHHHHHhCCC-hHHHH
Q 046764 460 SLKDISKKIVIRCNGL-PLAAK 480 (1113)
Q Consensus 460 ~l~~i~~~I~~~c~Gl-PLAi~ 480 (1113)
. ...+++.+.|. |-.+.
T Consensus 211 ~----~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 211 N----LEEIAKMTEGCVGAELK 228 (285)
T ss_dssp C----HHHHHHHCTTCCHHHHH
T ss_pred C----HHHHHHHcCCCCHHHHH
Confidence 2 34556666663 43333
No 188
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=82.44 E-value=7.2 Score=42.99 Aligned_cols=96 Identities=16% Similarity=0.129 Sum_probs=64.4
Q ss_pred CcEEEEEEecCCCCChhhhhhhcccccCCCCCcEEEEecCChh-hHhhh-CCCceEecCCCCHHHHHHHHHhcccCCCCC
Q 046764 378 GKKFLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTTRNRD-VAAIM-GSVRDYPLKESTKDDCLQVFTQHCLGMRDF 455 (1113)
Q Consensus 378 ~kr~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTTR~~~-va~~~-~~~~~~~l~~L~~~~s~~LF~~~af~~~~~ 455 (1113)
+++-++|+|++...+....+.+...+.....++.+|++|...+ +.... .....+++++++.++..+...... ..
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~~ 182 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV----TM 182 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----CC
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc----CC
Confidence 5678899999987755556666666654445677777766543 32222 223589999999999988887764 11
Q ss_pred CCchhHHHHHHHHHHHhCCChHHHHHH
Q 046764 456 SMQQSLKDISKKIVIRCNGLPLAAKTL 482 (1113)
Q Consensus 456 ~~~~~l~~i~~~I~~~c~GlPLAi~~i 482 (1113)
. .+.+..+++.++|.|..+..+
T Consensus 183 --~---~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 183 --S---QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp --C---HHHHHHHHHHTTTCHHHHHHT
T ss_pred --C---HHHHHHHHHHcCCCHHHHHHH
Confidence 1 234567889999999766543
No 189
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=81.97 E-value=3.7 Score=43.24 Aligned_cols=138 Identities=12% Similarity=0.088 Sum_probs=69.5
Q ss_pred EEEEEEeccc----chhhhc----------ccccCCc--CCCCCHHHHHHHHHHHhcCcEEEEEEecCCCCC--------
Q 046764 337 HLLSLSIMMP----NIIRFI----------ATADQPV--NGTDELGLLQEKLKNQMSGKKFLLVLGDVWNEN-------- 392 (1113)
Q Consensus 337 ~vi~I~G~gG----tLA~~v----------i~~~~~~--~~~~~~~~l~~~l~~~L~~kr~LiVLDDv~~~~-------- 392 (1113)
+-+-|+|..| ++|+.+ +....-. ........+...+.........+|+|||+....
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~ 119 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMS 119 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC------------
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhcccccccc
Confidence 3456899988 788877 1111100 011112233333444444567899999997531
Q ss_pred ----hhh---hhhhcccccC--CCCCcEEEEecCChhhHh-hh----CCCceEecCCCCHHHHHHHHHhcccCCCCCCCc
Q 046764 393 ----YSD---WDSLSLPFEA--GAPGSQIIVTTRNRDVAA-IM----GSVRDYPLKESTKDDCLQVFTQHCLGMRDFSMQ 458 (1113)
Q Consensus 393 ----~~~---w~~l~~~l~~--~~~gSrIivTTR~~~va~-~~----~~~~~~~l~~L~~~~s~~LF~~~af~~~~~~~~ 458 (1113)
... ...+...+.. ...+..||.||...+... .. .....+.++..+.++-.+++...+..... .
T Consensus 120 ~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~-- 196 (262)
T 2qz4_A 120 GFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL-T-- 196 (262)
T ss_dssp -------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC-C--
T ss_pred CccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC-C--
Confidence 011 1122221211 123566777776543211 11 12357889999999999988877533221 1
Q ss_pred hhHHHHHHHHHHHhCCChH
Q 046764 459 QSLKDISKKIVIRCNGLPL 477 (1113)
Q Consensus 459 ~~l~~i~~~I~~~c~GlPL 477 (1113)
.........+++.+.|.+-
T Consensus 197 ~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 197 QSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp BTHHHHHHHHHHTCTTCCH
T ss_pred cchhhHHHHHHHHCCCCCH
Confidence 1112234667777777653
No 190
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=81.85 E-value=5.5 Score=45.90 Aligned_cols=146 Identities=21% Similarity=0.150 Sum_probs=76.9
Q ss_pred eEEEEEEeccc----chhhhcccccC-----CcCCCCCHHHHHHHHHH----HhcCcEEEEEEecCCCCChhhhhhhccc
Q 046764 336 LHLLSLSIMMP----NIIRFIATADQ-----PVNGTDELGLLQEKLKN----QMSGKKFLLVLGDVWNENYSDWDSLSLP 402 (1113)
Q Consensus 336 ~~vi~I~G~gG----tLA~~vi~~~~-----~~~~~~~~~~l~~~l~~----~L~~kr~LiVLDDv~~~~~~~w~~l~~~ 402 (1113)
+..+-++|..| |+|+.+..... -.........+...+.. ...+++.+|++|++..-.....+.+...
T Consensus 50 ~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~ 129 (447)
T 3pvs_A 50 LHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPH 129 (447)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------CCHHH
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHH
Confidence 45678999999 88888811100 00112233333333222 1246788999999977654455555554
Q ss_pred ccCCCCCcEEEEecCChh--hHhh-hCCCceEecCCCCHHHHHHHHHhcccCCCCC---CCchhHHHHHHHHHHHhCCCh
Q 046764 403 FEAGAPGSQIIVTTRNRD--VAAI-MGSVRDYPLKESTKDDCLQVFTQHCLGMRDF---SMQQSLKDISKKIVIRCNGLP 476 (1113)
Q Consensus 403 l~~~~~gSrIivTTR~~~--va~~-~~~~~~~~l~~L~~~~s~~LF~~~af~~~~~---~~~~~l~~i~~~I~~~c~GlP 476 (1113)
+.. +.-.-|..||.+.. +... .....++.+++++.++-..++.+.+-..... ....--.+....+++.++|-+
T Consensus 130 le~-~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~ 208 (447)
T 3pvs_A 130 IED-GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDA 208 (447)
T ss_dssp HHT-TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCH
T ss_pred Hhc-CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCH
Confidence 443 22222333555432 1111 1223588999999999988888765321100 001112356677888898887
Q ss_pred HHHHHH
Q 046764 477 LAAKTL 482 (1113)
Q Consensus 477 LAi~~i 482 (1113)
-.+..+
T Consensus 209 R~lln~ 214 (447)
T 3pvs_A 209 RRALNT 214 (447)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
No 191
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=79.12 E-value=3.4 Score=48.71 Aligned_cols=100 Identities=10% Similarity=0.200 Sum_probs=56.7
Q ss_pred CcEEEEEEecCCCCChh---hhhhhcccccCCCCCcEEEEecCChh---hHhhhCCCceEecCCCCHHHHHHHHHhcccC
Q 046764 378 GKKFLLVLGDVWNENYS---DWDSLSLPFEAGAPGSQIIVTTRNRD---VAAIMGSVRDYPLKESTKDDCLQVFTQHCLG 451 (1113)
Q Consensus 378 ~kr~LiVLDDv~~~~~~---~w~~l~~~l~~~~~gSrIivTTR~~~---va~~~~~~~~~~l~~L~~~~s~~LF~~~af~ 451 (1113)
+++.+|++|++...... .+..+...+.. .+..||+++.... +.........+.+++++.++..+.+...+..
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~ 224 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIR 224 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHH
Confidence 56789999999664221 12333333322 2334555554322 2222223357999999999998888776543
Q ss_pred CCCCCCchhHHHHHHHHHHHhCC-ChHHHHHHH
Q 046764 452 MRDFSMQQSLKDISKKIVIRCNG-LPLAAKTLA 483 (1113)
Q Consensus 452 ~~~~~~~~~l~~i~~~I~~~c~G-lPLAi~~ig 483 (1113)
.+-. ..+ +....|++.++| ++-|+..+.
T Consensus 225 ~~~~-i~~---~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 225 EKFK-LDP---NVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp HTCC-CCT---THHHHHHHHTTTCHHHHHHHHT
T ss_pred cCCC-CCH---HHHHHHHHHcCCcHHHHHHHHH
Confidence 2211 112 346678888988 555565554
No 192
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=74.58 E-value=8.8 Score=41.85 Aligned_cols=136 Identities=15% Similarity=0.192 Sum_probs=74.7
Q ss_pred EEEEEEeccc----chhhhccc-------ccCCcCCCCCHHHHHHHHHHHhc-----CcEEEEEEecCCCCC-hhhhhhh
Q 046764 337 HLLSLSIMMP----NIIRFIAT-------ADQPVNGTDELGLLQEKLKNQMS-----GKKFLLVLGDVWNEN-YSDWDSL 399 (1113)
Q Consensus 337 ~vi~I~G~gG----tLA~~vi~-------~~~~~~~~~~~~~l~~~l~~~L~-----~kr~LiVLDDv~~~~-~~~w~~l 399 (1113)
.++-+.|..| |+|+.+.. ... ......+.+.+.+.+... +++-+|++||+.... .+..+.+
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~--~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L 126 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDVNADMMFVN--GSDCKIDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHL 126 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHTTEEEEEEE--TTTCCHHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHH
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEc--ccccCHHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHH
Confidence 4566778566 77777611 111 122235555555555433 378899999998764 3445555
Q ss_pred cccccCCCCCcEEEEecCChh-----hHhhhCCCceEecCCCCHHHHHHH-------HHhcccCCCCCCCchhHHHHHHH
Q 046764 400 SLPFEAGAPGSQIIVTTRNRD-----VAAIMGSVRDYPLKESTKDDCLQV-------FTQHCLGMRDFSMQQSLKDISKK 467 (1113)
Q Consensus 400 ~~~l~~~~~gSrIivTTR~~~-----va~~~~~~~~~~l~~L~~~~s~~L-------F~~~af~~~~~~~~~~l~~i~~~ 467 (1113)
...+.....+.++|+||.... +...+ .++++++++.++-.++ +...+ ...+....+ .+....
T Consensus 127 ~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~---~~i~~~~~~~~e~~~il~~~~~~l~~~~-~~~~~~~~~--~~~~~~ 200 (324)
T 3u61_B 127 RSFMEAYSSNCSIIITANNIDGIIKPLQSRC---RVITFGQPTDEDKIEMMKQMIRRLTEIC-KHEGIAIAD--MKVVAA 200 (324)
T ss_dssp HHHHHHHGGGCEEEEEESSGGGSCTTHHHHS---EEEECCCCCHHHHHHHHHHHHHHHHHHH-HHHTCCBSC--HHHHHH
T ss_pred HHHHHhCCCCcEEEEEeCCccccCHHHHhhC---cEEEeCCCCHHHHHHHHHHHHHHHHHHH-HHcCCCCCc--HHHHHH
Confidence 544433334577888877543 22332 4799999998874332 22222 111111111 255677
Q ss_pred HHHHhCCChHHHH
Q 046764 468 IVIRCNGLPLAAK 480 (1113)
Q Consensus 468 I~~~c~GlPLAi~ 480 (1113)
|++.++|-+-.+.
T Consensus 201 l~~~~~gd~R~a~ 213 (324)
T 3u61_B 201 LVKKNFPDFRKTI 213 (324)
T ss_dssp HHHHTCSCTTHHH
T ss_pred HHHhCCCCHHHHH
Confidence 8888888665433
No 193
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=73.85 E-value=6.3 Score=41.84 Aligned_cols=130 Identities=14% Similarity=0.049 Sum_probs=66.9
Q ss_pred eEEEEEEeccc----chhhhccc--------ccC-CcCCCCCH----HHHHHHHHHHhcCcEEEEEEecCCCC-------
Q 046764 336 LHLLSLSIMMP----NIIRFIAT--------ADQ-PVNGTDEL----GLLQEKLKNQMSGKKFLLVLGDVWNE------- 391 (1113)
Q Consensus 336 ~~vi~I~G~gG----tLA~~vi~--------~~~-~~~~~~~~----~~l~~~l~~~L~~kr~LiVLDDv~~~------- 391 (1113)
.+-+-|+|..| ++|+.+.. -.. ........ ..+...+......+..+|+|||+...
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~ 143 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG 143 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC
Confidence 45677899988 78887711 100 00011111 22333344444567899999998532
Q ss_pred ---Chhhhhhhccccc---CCCCCcEEEEecCChhhHhhh---C-CCceEecCCCCH-HHHHHHHHhcccCCCCCCCchh
Q 046764 392 ---NYSDWDSLSLPFE---AGAPGSQIIVTTRNRDVAAIM---G-SVRDYPLKESTK-DDCLQVFTQHCLGMRDFSMQQS 460 (1113)
Q Consensus 392 ---~~~~w~~l~~~l~---~~~~gSrIivTTR~~~va~~~---~-~~~~~~l~~L~~-~~s~~LF~~~af~~~~~~~~~~ 460 (1113)
.....+.+...+. ....+..||.||...+..... + ....+++.+++. ++-..++.... .. .
T Consensus 144 ~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~~-~--- 215 (272)
T 1d2n_A 144 PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----NF-K--- 215 (272)
T ss_dssp TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----CS-C---
T ss_pred hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----CC-C---
Confidence 1111222222222 123345577788776543331 1 135788999988 55555555421 11 1
Q ss_pred HHHHHHHHHHHhCC
Q 046764 461 LKDISKKIVIRCNG 474 (1113)
Q Consensus 461 l~~i~~~I~~~c~G 474 (1113)
.+....|++.+.|
T Consensus 216 -~~~~~~l~~~~~g 228 (272)
T 1d2n_A 216 -DKERTTIAQQVKG 228 (272)
T ss_dssp -HHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHhcC
Confidence 2345667777766
No 194
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=72.27 E-value=1.7 Score=47.91 Aligned_cols=92 Identities=11% Similarity=0.019 Sum_probs=52.7
Q ss_pred EEEEEEecCCCCChh-h-hhhhcccccC-CCCCcEEEEecCC---------hhhHhhhCCCceEecCCCCHHHHHHHHHh
Q 046764 380 KFLLVLGDVWNENYS-D-WDSLSLPFEA-GAPGSQIIVTTRN---------RDVAAIMGSVRDYPLKESTKDDCLQVFTQ 447 (1113)
Q Consensus 380 r~LiVLDDv~~~~~~-~-w~~l~~~l~~-~~~gSrIivTTR~---------~~va~~~~~~~~~~l~~L~~~~s~~LF~~ 447 (1113)
.-+|++||+...... . .+.+...+.. ...|.+||+||.. ..+...+....++++++ +.++...++..
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~ 177 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKE 177 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHH
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHH
Confidence 568999999664211 1 1222222211 1235678887753 22344444446799999 99999999888
Q ss_pred cccCCCCCCCchhHHHHHHHHHHHhCCChH
Q 046764 448 HCLGMRDFSMQQSLKDISKKIVIRCNGLPL 477 (1113)
Q Consensus 448 ~af~~~~~~~~~~l~~i~~~I~~~c~GlPL 477 (1113)
.+....- ... .+....|++.+ |-.-
T Consensus 178 ~~~~~~~-~l~---~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 178 KLKEFNL-ELR---KEVIDYLLENT-KNVR 202 (324)
T ss_dssp HHHHTTC-CCC---HHHHHHHHHHC-SSHH
T ss_pred HHHhcCC-CCC---HHHHHHHHHhC-CCHH
Confidence 7643221 111 24456677777 6543
No 195
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=71.58 E-value=15 Score=40.34 Aligned_cols=138 Identities=9% Similarity=0.083 Sum_probs=77.7
Q ss_pred EEEEeccc----chhhhcccc---c--------CCcCCCCCHHHHHHHHHHHh------cCcEEEEEEecCCCCChhhhh
Q 046764 339 LSLSIMMP----NIIRFIATA---D--------QPVNGTDELGLLQEKLKNQM------SGKKFLLVLGDVWNENYSDWD 397 (1113)
Q Consensus 339 i~I~G~gG----tLA~~vi~~---~--------~~~~~~~~~~~l~~~l~~~L------~~kr~LiVLDDv~~~~~~~w~ 397 (1113)
+.++|..| |+|+.+... . .+..+....+.+.+.+.... .+.+-++|+|++...+....+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~ 128 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQN 128 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHH
Confidence 67899988 777777111 0 00012233455544444333 234678899999765445555
Q ss_pred hhcccccCCCCCcEEEEecCChh-hHhhh-CCCceEecCCCCHHHHHHHHHhcccCCCCCCCchhHHHHHHHHHHHhCCC
Q 046764 398 SLSLPFEAGAPGSQIIVTTRNRD-VAAIM-GSVRDYPLKESTKDDCLQVFTQHCLGMRDFSMQQSLKDISKKIVIRCNGL 475 (1113)
Q Consensus 398 ~l~~~l~~~~~gSrIivTTR~~~-va~~~-~~~~~~~l~~L~~~~s~~LF~~~af~~~~~~~~~~l~~i~~~I~~~c~Gl 475 (1113)
.+...+.......++|++|.... +.... .....+++.+++.++..+.....+-.. ..... .+....|++.++|-
T Consensus 129 ~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~-~~~i~---~~~~~~i~~~s~G~ 204 (340)
T 1sxj_C 129 ALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHE-KLKLS---PNAEKALIELSNGD 204 (340)
T ss_dssp HHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTT-TCCBC---HHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHc-CCCCC---HHHHHHHHHHcCCC
Confidence 55554443334567777765432 21111 122478999999998887776654211 11111 24567788889998
Q ss_pred hHHHH
Q 046764 476 PLAAK 480 (1113)
Q Consensus 476 PLAi~ 480 (1113)
+--+.
T Consensus 205 ~r~~~ 209 (340)
T 1sxj_C 205 MRRVL 209 (340)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 86443
No 196
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=71.05 E-value=2.3 Score=42.93 Aligned_cols=94 Identities=11% Similarity=0.112 Sum_probs=56.6
Q ss_pred hhccccccEEecccccccc-----cccccccCCCcceEEEcCCceeccccccccccccccccccceeeccccCccChhhH
Q 046764 628 VNTLYNLRMLMLQKCNQLE-----KMCSDMGNLLKLHHLDNFDFCCWKDIDSALQELKLLHLHGALEISKLENVRDASEA 702 (1113)
Q Consensus 628 i~~L~~L~~LdL~~c~~l~-----~LP~~i~~L~~L~~L~L~~~~i~~~~~~~l~~L~L~~L~g~L~i~~l~~~~~~~~~ 702 (1113)
+.+-+.|+.|+|++++.+. .+-..+..-+.|+.|+|++|.++......|
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~al-------------------------- 90 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGL-------------------------- 90 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTH--------------------------
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHH--------------------------
Confidence 4455789999998753433 344556667789999999886643221111
Q ss_pred HHhhcCCCcccceEEeeecCCCCCCCCchhhHhhhccCCCCCCcceEEEec
Q 046764 703 GEAQLNGKKNLKTLLLQRTSNNGDSREPEIETHVLDMLKPHQNLERFCISG 753 (1113)
Q Consensus 703 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~L~~ 753 (1113)
...|..-+.|+.|+|++|... ........+.|..-+.|+.|+|++
T Consensus 91 -A~aL~~N~tL~~L~L~~N~Ig-----~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 91 -IELIETSPSLRVLNVESNFLT-----PELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp -HHHHHHCSSCCEEECCSSBCC-----HHHHHHHHHHTTTTCCCSEEECCC
T ss_pred -HHHHhcCCccCeEecCCCcCC-----HHHHHHHHHHHhhCCceeEEECCC
Confidence 122334456777777777521 222334455666666777777764
No 197
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=70.79 E-value=28 Score=38.55 Aligned_cols=100 Identities=9% Similarity=-0.013 Sum_probs=54.4
Q ss_pred hcCcEEEEEEecCCCCChh-----------hhhhhccccc---CCCCCcEEEEecCChh-----hHhhhCCCceEecCCC
Q 046764 376 MSGKKFLLVLGDVWNENYS-----------DWDSLSLPFE---AGAPGSQIIVTTRNRD-----VAAIMGSVRDYPLKES 436 (1113)
Q Consensus 376 L~~kr~LiVLDDv~~~~~~-----------~w~~l~~~l~---~~~~gSrIivTTR~~~-----va~~~~~~~~~~l~~L 436 (1113)
-..+..+|+||++...... ....+...+. ....+..||.||...+ +.. .....+.+...
T Consensus 140 ~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P 217 (355)
T 2qp9_X 140 RENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLP 217 (355)
T ss_dssp HHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCC
T ss_pred HHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCc
Confidence 3457789999999654211 0111211111 1234566666776442 222 33467889999
Q ss_pred CHHHHHHHHHhcccCCCCCCCchhHHHHHHHHHHHhCCC-hHHHHH
Q 046764 437 TKDDCLQVFTQHCLGMRDFSMQQSLKDISKKIVIRCNGL-PLAAKT 481 (1113)
Q Consensus 437 ~~~~s~~LF~~~af~~~~~~~~~~l~~i~~~I~~~c~Gl-PLAi~~ 481 (1113)
+.++-..++..++-... .... ......|++.+.|. +-.|..
T Consensus 218 ~~~~r~~il~~~l~~~~-~~~~---~~~l~~la~~t~G~sg~dl~~ 259 (355)
T 2qp9_X 218 DLAARTTMFEINVGDTP-SVLT---KEDYRTLGAMTEGYSGSDIAV 259 (355)
T ss_dssp CHHHHHHHHHHHHTTSC-BCCC---HHHHHHHHHHTTTCCHHHHHH
T ss_pred CHHHHHHHHHHHHhhCC-CCCC---HHHHHHHHHHcCCCCHHHHHH
Confidence 99999888887753221 1111 23346677888874 433433
No 198
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=70.50 E-value=11 Score=41.47 Aligned_cols=136 Identities=13% Similarity=0.086 Sum_probs=76.3
Q ss_pred EEEEEeccc----chhhhcccccC------CcCCCCCHHHHHHHHHHHhcCcEEEEEEecCCCCChhhhhhhcccccCC-
Q 046764 338 LLSLSIMMP----NIIRFIATADQ------PVNGTDELGLLQEKLKNQMSGKKFLLVLGDVWNENYSDWDSLSLPFEAG- 406 (1113)
Q Consensus 338 vi~I~G~gG----tLA~~vi~~~~------~~~~~~~~~~l~~~l~~~L~~kr~LiVLDDv~~~~~~~w~~l~~~l~~~- 406 (1113)
.+-|+|..| ++|+.+..... ..........+...+.. ..+..+|+||++........+.+...+...
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~ 134 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYR 134 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSHHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSC
T ss_pred eEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccchhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhcc
Confidence 466899988 88888711100 00112233333333332 245678999999876544444443332221
Q ss_pred -----------------CCCcEEEEecCChh-----hHhhhCCCceEecCCCCHHHHHHHHHhcccCCCCCCCchhHHHH
Q 046764 407 -----------------APGSQIIVTTRNRD-----VAAIMGSVRDYPLKESTKDDCLQVFTQHCLGMRDFSMQQSLKDI 464 (1113)
Q Consensus 407 -----------------~~gSrIivTTR~~~-----va~~~~~~~~~~l~~L~~~~s~~LF~~~af~~~~~~~~~~l~~i 464 (1113)
.++-++|.||.... +... ...++.+.+++.++...++...+-.... . --.+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R--~~~~i~l~~~~~~e~~~il~~~~~~~~~-~---~~~~~ 208 (338)
T 3pfi_A 135 LDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDR--FGMQFRLEFYKDSELALILQKAALKLNK-T---CEEKA 208 (338)
T ss_dssp C---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTT--CSEEEECCCCCHHHHHHHHHHHHHHTTC-E---ECHHH
T ss_pred chhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhh--cCEEeeCCCcCHHHHHHHHHHHHHhcCC-C---CCHHH
Confidence 11245666665432 2222 2368999999999999988877532221 1 11355
Q ss_pred HHHHHHHhCCChHHHHH
Q 046764 465 SKKIVIRCNGLPLAAKT 481 (1113)
Q Consensus 465 ~~~I~~~c~GlPLAi~~ 481 (1113)
...+++.+.|.|-.+..
T Consensus 209 ~~~l~~~~~G~~r~l~~ 225 (338)
T 3pfi_A 209 ALEIAKRSRSTPRIALR 225 (338)
T ss_dssp HHHHHHTTTTCHHHHHH
T ss_pred HHHHHHHHCcCHHHHHH
Confidence 67788889999854443
No 199
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=69.19 E-value=1.5 Score=43.28 Aligned_cols=64 Identities=17% Similarity=0.191 Sum_probs=40.6
Q ss_pred HHHHHHHhchHHHHHHH-------HHHHhhccchHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHHH
Q 046764 237 MMGTLIEVNPAVINAVI-------DDAEEKQKREQSVKMWLGELQNLAYDVDVLLDEFETEATDSRFEEILT 301 (1113)
Q Consensus 237 ~~~~fl~~~l~~i~~~l-------~dae~~~~~~~~v~~W~~~lr~~ayd~ed~id~~~~~~~~~~~~~i~~ 301 (1113)
.++.||+++++.|+.+. .+.+.+ ...+.++.|+.++.++|.-.+......+.+.+...+++|.+
T Consensus 98 ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~-~~~~~~~~Wr~AL~~va~~~G~~~~~~e~~~i~~Iv~~v~~ 168 (176)
T 3jrn_A 98 VMPIFYGVEPNHVRWQTGVLAEQFKKHASR-EDPEKVLKWRQALTNFAQLSGDCSGDDDSKLVDKIANEISN 168 (176)
T ss_dssp EEEEECSSCHHHHHHTCTHHHHHHHHHHTT-SCHHHHHHHHHHHHHHTTSCCEECCSCHHHHHHHHHHHHHT
T ss_pred EEEEEecCCHHHhhhccCcHHHHHHHHHhc-cCHHHHHHHHHHHHHHhcccceecCCCHHHHHHHHHHHHHH
Confidence 46889999999998332 222222 35678999999999999877655543333333334444433
No 200
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=68.91 E-value=14 Score=39.90 Aligned_cols=68 Identities=6% Similarity=0.077 Sum_probs=45.3
Q ss_pred EEEEEecCCCC---------ChhhhhhhcccccCCCCCcEEEEecCChh----------hHhhhCCCceEecCCCCHHHH
Q 046764 381 FLLVLGDVWNE---------NYSDWDSLSLPFEAGAPGSQIIVTTRNRD----------VAAIMGSVRDYPLKESTKDDC 441 (1113)
Q Consensus 381 ~LiVLDDv~~~---------~~~~w~~l~~~l~~~~~gSrIivTTR~~~----------va~~~~~~~~~~l~~L~~~~s 441 (1113)
-+|++|++... .......+...+.....+.+||.||.... +...+ ...+++++++.++-
T Consensus 132 ~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~ 209 (309)
T 3syl_A 132 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRI--AHHIEFPDYSDEEL 209 (309)
T ss_dssp SEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHE--EEEEEECCCCHHHH
T ss_pred CEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhC--CeEEEcCCcCHHHH
Confidence 48999999733 22344555555555555678888886432 22222 26799999999999
Q ss_pred HHHHHhccc
Q 046764 442 LQVFTQHCL 450 (1113)
Q Consensus 442 ~~LF~~~af 450 (1113)
..++...+-
T Consensus 210 ~~il~~~l~ 218 (309)
T 3syl_A 210 FEIAGHMLD 218 (309)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988877753
No 201
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=64.46 E-value=21 Score=38.94 Aligned_cols=133 Identities=11% Similarity=-0.033 Sum_probs=69.4
Q ss_pred EEEEEEeccc----chhhhcc----------cccCCc-CCCCCHHHHHH-HHHHHhcCcEEEEEEecCCCCChh------
Q 046764 337 HLLSLSIMMP----NIIRFIA----------TADQPV-NGTDELGLLQE-KLKNQMSGKKFLLVLGDVWNENYS------ 394 (1113)
Q Consensus 337 ~vi~I~G~gG----tLA~~vi----------~~~~~~-~~~~~~~~l~~-~l~~~L~~kr~LiVLDDv~~~~~~------ 394 (1113)
+-+-++|..| ++|+.+. ...... ......+.... .+...-..+..+|+||++......
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~ 131 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGES 131 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcc
Confidence 4467899998 7888771 110000 00111222222 233333456689999999643110
Q ss_pred -----hhhhhccc---ccCCCCCcEEEEecCChh-----hHhhhCCCceEecCCCCHHHHHHHHHhcccCCCCCCCchhH
Q 046764 395 -----DWDSLSLP---FEAGAPGSQIIVTTRNRD-----VAAIMGSVRDYPLKESTKDDCLQVFTQHCLGMRDFSMQQSL 461 (1113)
Q Consensus 395 -----~w~~l~~~---l~~~~~gSrIivTTR~~~-----va~~~~~~~~~~l~~L~~~~s~~LF~~~af~~~~~~~~~~l 461 (1113)
....+... +.....+..||.||...+ +... ....+.+...+.++-.+++..++-.......
T Consensus 132 ~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~R--f~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---- 205 (322)
T 3eie_A 132 EASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRR--FERRIYIPLPDLAARTTMFEINVGDTPCVLT---- 205 (322)
T ss_dssp CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHTTCCCCCC----
T ss_pred hHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcc--cCeEEEeCCCCHHHHHHHHHHHhccCCCCCC----
Confidence 01222211 112334566776776533 2222 3357889999999999999887633221111
Q ss_pred HHHHHHHHHHhCCC
Q 046764 462 KDISKKIVIRCNGL 475 (1113)
Q Consensus 462 ~~i~~~I~~~c~Gl 475 (1113)
......|++.+.|.
T Consensus 206 ~~~l~~la~~t~g~ 219 (322)
T 3eie_A 206 KEDYRTLGAMTEGY 219 (322)
T ss_dssp HHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHcCCC
Confidence 12345677777763
No 202
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=62.10 E-value=3.8 Score=40.34 Aligned_cols=66 Identities=9% Similarity=0.098 Sum_probs=34.9
Q ss_pred cCcEEEEEEecCCCCCh--------hhhhhhcccccCCCCCcEEEEecCChhhHhhh-------CCCceEecCCCCHHHH
Q 046764 377 SGKKFLLVLGDVWNENY--------SDWDSLSLPFEAGAPGSQIIVTTRNRDVAAIM-------GSVRDYPLKESTKDDC 441 (1113)
Q Consensus 377 ~~kr~LiVLDDv~~~~~--------~~w~~l~~~l~~~~~gSrIivTTR~~~va~~~-------~~~~~~~l~~L~~~~s 441 (1113)
.+++.+|||||+..... ...+.+...+ .. .+..+|.||......... ..-..+.+++++.++.
T Consensus 113 ~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~-~~-~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~ 190 (195)
T 1jbk_A 113 QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL-AR-GELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDT 190 (195)
T ss_dssp STTTEEEEEETGGGGTT------CCCCHHHHHHHH-HT-TSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHH
T ss_pred cCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhh-cc-CCeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHH
Confidence 35678999999965420 1122222222 22 234566666654432111 1113578888888876
Q ss_pred HHH
Q 046764 442 LQV 444 (1113)
Q Consensus 442 ~~L 444 (1113)
.++
T Consensus 191 ~~i 193 (195)
T 1jbk_A 191 IAI 193 (195)
T ss_dssp HTT
T ss_pred HHH
Confidence 654
No 203
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=59.32 E-value=64 Score=34.98 Aligned_cols=140 Identities=9% Similarity=0.011 Sum_probs=71.9
Q ss_pred EEEEEEeccc----chhhhcccc-----------cCCcC--CCCCHHHHHHHHHHHhcCcEEEEEEecCCCCCh------
Q 046764 337 HLLSLSIMMP----NIIRFIATA-----------DQPVN--GTDELGLLQEKLKNQMSGKKFLLVLGDVWNENY------ 393 (1113)
Q Consensus 337 ~vi~I~G~gG----tLA~~vi~~-----------~~~~~--~~~~~~~l~~~l~~~L~~kr~LiVLDDv~~~~~------ 393 (1113)
+-|-++|..| ++|+.+... ..... .......+...+...-..+..+|++|++.....
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~ 125 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE 125 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCC
T ss_pred ceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhcccccccc
Confidence 4567899988 778777111 10000 111223333333333346778999999965310
Q ss_pred -hhhhh----hccccc---CCCCCcEEEEecCChh-----hHhhhCCCceEecCCCCHHHHHHHHHhcccCCCCCCCchh
Q 046764 394 -SDWDS----LSLPFE---AGAPGSQIIVTTRNRD-----VAAIMGSVRDYPLKESTKDDCLQVFTQHCLGMRDFSMQQS 460 (1113)
Q Consensus 394 -~~w~~----l~~~l~---~~~~gSrIivTTR~~~-----va~~~~~~~~~~l~~L~~~~s~~LF~~~af~~~~~~~~~~ 460 (1113)
..... +...+. ....+-.||.||...+ +.. ..+..+.+...+.++-..++...+-. ......
T Consensus 126 ~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~-~~~~l~-- 200 (322)
T 1xwi_A 126 SEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGT-TQNSLT-- 200 (322)
T ss_dssp TTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTT-CCBCCC--
T ss_pred chHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhc-CCCCCC--
Confidence 00111 111111 1234555666665432 222 33467889999999988888876522 211111
Q ss_pred HHHHHHHHHHHhCCC-hHHHHHH
Q 046764 461 LKDISKKIVIRCNGL-PLAAKTL 482 (1113)
Q Consensus 461 l~~i~~~I~~~c~Gl-PLAi~~i 482 (1113)
......|++.+.|. +-.|..+
T Consensus 201 -~~~l~~la~~t~G~sgadl~~l 222 (322)
T 1xwi_A 201 -EADFRELGRKTDGYSGADISII 222 (322)
T ss_dssp -HHHHHHHHHTCTTCCHHHHHHH
T ss_pred -HHHHHHHHHHcCCCCHHHHHHH
Confidence 23456677788876 3334443
No 204
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=56.50 E-value=41 Score=37.20 Aligned_cols=143 Identities=8% Similarity=-0.013 Sum_probs=71.4
Q ss_pred EEEEEEeccc----chhhhc----------ccccCCcCC-CCCHHHHHHH-HHHHhcCcEEEEEEecCCCCCh-------
Q 046764 337 HLLSLSIMMP----NIIRFI----------ATADQPVNG-TDELGLLQEK-LKNQMSGKKFLLVLGDVWNENY------- 393 (1113)
Q Consensus 337 ~vi~I~G~gG----tLA~~v----------i~~~~~~~~-~~~~~~l~~~-l~~~L~~kr~LiVLDDv~~~~~------- 393 (1113)
+-|-|+|..| ++|+.+ +........ .......... +...-..+..+|+||++.....
T Consensus 118 ~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~ 197 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEH 197 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcc
Confidence 4567899988 788877 111110000 1112222222 2222345678999999933100
Q ss_pred ----hhhhhhccccc----CCCCCcEEEEecCChh-hHhhh--CCCceEecCCCCHHHHHHHHHhcccCCCCCCCchhHH
Q 046764 394 ----SDWDSLSLPFE----AGAPGSQIIVTTRNRD-VAAIM--GSVRDYPLKESTKDDCLQVFTQHCLGMRDFSMQQSLK 462 (1113)
Q Consensus 394 ----~~w~~l~~~l~----~~~~gSrIivTTR~~~-va~~~--~~~~~~~l~~L~~~~s~~LF~~~af~~~~~~~~~~l~ 462 (1113)
.....+...+. ....+..||.||...+ +.... .....+.+...+.++...++...+-.... ... .
T Consensus 198 ~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~-~l~---~ 273 (357)
T 3d8b_A 198 ESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQC-CLS---E 273 (357)
T ss_dssp CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCB-CCC---H
T ss_pred hHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCC-Ccc---H
Confidence 01112222221 1123455666665432 21111 22357889999999888888776532211 111 2
Q ss_pred HHHHHHHHHhCC-ChHHHHHHH
Q 046764 463 DISKKIVIRCNG-LPLAAKTLA 483 (1113)
Q Consensus 463 ~i~~~I~~~c~G-lPLAi~~ig 483 (1113)
+....|++.+.| .+-++..+.
T Consensus 274 ~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 274 EEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHH
Confidence 456678888888 455555543
No 205
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=56.02 E-value=30 Score=38.24 Aligned_cols=92 Identities=14% Similarity=0.084 Sum_probs=55.2
Q ss_pred EEEEEecCCCCChhhhhhhcccccCCCCCcEEEEecCC-----------------hhhHhhhCCCceEecCCCCHHHHHH
Q 046764 381 FLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTTRN-----------------RDVAAIMGSVRDYPLKESTKDDCLQ 443 (1113)
Q Consensus 381 ~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTTR~-----------------~~va~~~~~~~~~~l~~L~~~~s~~ 443 (1113)
.+|+||++.....+..+.+...+...... .++++|.. ..+..++ ..+.+.+++.++...
T Consensus 191 ~vl~IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~---~~i~~~~~~~~e~~~ 266 (368)
T 3uk6_A 191 GVLFIDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRL---LIVSTTPYSEKDTKQ 266 (368)
T ss_dssp CEEEEESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTE---EEEEECCCCHHHHHH
T ss_pred ceEEEhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhc---cEEEecCCCHHHHHH
Confidence 49999999776555555555554433222 34444421 2333333 358999999999999
Q ss_pred HHHhcccCCCCCCCchhHHHHHHHHHHHhC-CChHHHH
Q 046764 444 VFTQHCLGMRDFSMQQSLKDISKKIVIRCN-GLPLAAK 480 (1113)
Q Consensus 444 LF~~~af~~~~~~~~~~l~~i~~~I~~~c~-GlPLAi~ 480 (1113)
++..++-.... ... .+....|++.+. |.|-.+.
T Consensus 267 il~~~~~~~~~-~~~---~~~l~~l~~~~~~G~~r~~~ 300 (368)
T 3uk6_A 267 ILRIRCEEEDV-EMS---EDAYTVLTRIGLETSLRYAI 300 (368)
T ss_dssp HHHHHHHHTTC-CBC---HHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHcCC-CCC---HHHHHHHHHHhcCCCHHHHH
Confidence 99877533221 111 345677888887 7665443
No 206
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=53.96 E-value=83 Score=33.29 Aligned_cols=140 Identities=6% Similarity=-0.030 Sum_probs=71.3
Q ss_pred EEEEEEeccc----chhhhc----------ccccCCcC-CCCCHHHHHH-HHHHHhcCcEEEEEEecCCCCChh------
Q 046764 337 HLLSLSIMMP----NIIRFI----------ATADQPVN-GTDELGLLQE-KLKNQMSGKKFLLVLGDVWNENYS------ 394 (1113)
Q Consensus 337 ~vi~I~G~gG----tLA~~v----------i~~~~~~~-~~~~~~~l~~-~l~~~L~~kr~LiVLDDv~~~~~~------ 394 (1113)
+.+.|+|..| |+|+.+ +....... .......... .+......+..+|++|++......
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~ 134 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEH 134 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcc
Confidence 4567899998 888877 11111000 1112223332 333333456789999999543110
Q ss_pred -----hhhhhcc---cccCC--CCCcEEEEecCChh-----hHhhhCCCceEecCCCCHHHHHHHHHhcccCCCCCCCch
Q 046764 395 -----DWDSLSL---PFEAG--APGSQIIVTTRNRD-----VAAIMGSVRDYPLKESTKDDCLQVFTQHCLGMRDFSMQQ 459 (1113)
Q Consensus 395 -----~w~~l~~---~l~~~--~~gSrIivTTR~~~-----va~~~~~~~~~~l~~L~~~~s~~LF~~~af~~~~~~~~~ 459 (1113)
....+.. .++.. +.+..||.||...+ +...+ ...+.+...+.++-..++...+-.... ...
T Consensus 135 ~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~--~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~- 210 (297)
T 3b9p_A 135 EASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRF--TKRVYVSLPDEQTRELLLNRLLQKQGS-PLD- 210 (297)
T ss_dssp CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHC--CEEEECCCCCHHHHHHHHHHHHGGGSC-CSC-
T ss_pred hHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhC--CeEEEeCCcCHHHHHHHHHHHHHhcCC-CCC-
Confidence 0001111 11111 23456677776532 33322 356788888888888887766532211 111
Q ss_pred hHHHHHHHHHHHhCCChH-HHHHH
Q 046764 460 SLKDISKKIVIRCNGLPL-AAKTL 482 (1113)
Q Consensus 460 ~l~~i~~~I~~~c~GlPL-Ai~~i 482 (1113)
.+....+++.+.|.+- ++..+
T Consensus 211 --~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 211 --TEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp --HHHHHHHHHHTTTCCHHHHHHH
T ss_pred --HHHHHHHHHHcCCCCHHHHHHH
Confidence 2345678888888775 44443
No 207
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=53.13 E-value=4.5 Score=40.79 Aligned_cols=49 Identities=10% Similarity=0.211 Sum_probs=34.6
Q ss_pred HHHHHHHhchHHHHHHHH-------HHHhhccchHHHHHHHHHHHHHHhhhhhhhhh
Q 046764 237 MMGTLIEVNPAVINAVID-------DAEEKQKREQSVKMWLGELQNLAYDVDVLLDE 286 (1113)
Q Consensus 237 ~~~~fl~~~l~~i~~~l~-------dae~~~~~~~~v~~W~~~lr~~ayd~ed~id~ 286 (1113)
+++.||+++++.||.+.. ..++ ....+.++.|+.++.++|.-.+..+..
T Consensus 126 ViPIFY~VdPs~Vr~q~g~fg~af~~~~~-~~~~~~v~~Wr~AL~~va~lsG~~~~~ 181 (204)
T 3ozi_A 126 ILPIFYMVDPSDVRHQTGCYKKAFRKHAN-KFDGQTIQNWKDALKKVGDLKGWHIGK 181 (204)
T ss_dssp ECCEEESSCHHHHHHTCTTHHHHHHHHTT-TSCHHHHHHHHHHHHHHHTSCBEEECT
T ss_pred eEEEEeecCHHHHHhccccHHHHHHHHHH-hhCHHHHHHHHHHHHHHhccCceecCC
Confidence 478899999999984421 1121 224578999999999999876655444
No 208
>3iee_A Putative exported protein; YP_212931.1, hypothetical protein BF3319 from bacteroides FR structural genomics; HET: MSE; 1.70A {Bacteroides fragilis nctc 9343}
Probab=51.85 E-value=1.7e+02 Score=30.25 Aligned_cols=112 Identities=12% Similarity=0.105 Sum_probs=65.5
Q ss_pred eeeeecCCCCCCHHHHHHHHHHH-----HHHHHHhHHHHHHHHHHHHhhhccchhhhhccchhhHHHhHHH-HHHHHHHh
Q 046764 171 LTSVFDAGGFSSTDEAKQLLQVA-----ALSNVVGYIGCLADILLNQHGKHKAADIMGRIGASAAVFGFLT-MMGTLIEV 244 (1113)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~-----~~~~v~~~l~kl~~~l~~e~~~~~~v~~~~~~~d~~~i~~e~~-~~~~fl~~ 244 (1113)
..+|++++..+..+..+...|.- ...+......++.+.+..|-.. + .+++.-...+++ .|.+.-+.
T Consensus 75 ~a~~~~p~d~Fg~e~rqnL~q~~~~lf~s~~~~~an~~~~~sYlkaed~k-k-------gkKL~~~n~~l~~~~~e~k~~ 146 (270)
T 3iee_A 75 SAIVLNPGNCFNEETRRNLKQNYTGLFQARTEFYANFDTYLSYLKKKDVT-N-------AKKLLDVNYQLSTQMSEYKQN 146 (270)
T ss_dssp HHHHTSCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH-H-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHHHHHHHHHHH
Confidence 44578888766664444444422 1122223333444444322211 2 233333333332 22223334
Q ss_pred chHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 046764 245 NPAVINAVIDDAEEKQKREQSVKMWLGELQNLAYDVDVLLDEFETE 290 (1113)
Q Consensus 245 ~l~~i~~~l~dae~~~~~~~~v~~W~~~lr~~ayd~ed~id~~~~~ 290 (1113)
-+..+..+...||.---.|+-+|.-+-+.|.+..-+++++|.|...
T Consensus 147 ifd~Lsp~aeqAE~~lL~DhPLKeqIla~kkm~~~~q~ii~l~~rk 192 (270)
T 3iee_A 147 IFDILSPFTEQAELVLLVDNPLKAQIMSVRKMSSTMQSILNLYARK 192 (270)
T ss_dssp HHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHhhHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556667777788777788999999999999999999999999874
No 209
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=50.96 E-value=6.7 Score=38.62 Aligned_cols=81 Identities=21% Similarity=0.106 Sum_probs=41.8
Q ss_pred EEEEEEeccc----chhhhcccc----cCCcCCCCCHHHHHHHHHHH------------hcCcEEEEEEecCCCCChhhh
Q 046764 337 HLLSLSIMMP----NIIRFIATA----DQPVNGTDELGLLQEKLKNQ------------MSGKKFLLVLGDVWNENYSDW 396 (1113)
Q Consensus 337 ~vi~I~G~gG----tLA~~vi~~----~~~~~~~~~~~~l~~~l~~~------------L~~kr~LiVLDDv~~~~~~~w 396 (1113)
+.+.|+|..| |||+.+... ........+..++...+... +. +.-++||||++....+.|
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~llilDE~~~~~~~~~ 117 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTVL-NSPVLVLDDLGSERLSDW 117 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHHH-TCSEEEEETCSSSCCCHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHhc-CCCEEEEeCCCCCcCCHH
Confidence 6788999988 888888211 11001112333333333221 22 345889999984322444
Q ss_pred hh--hcccccCC-CCCcEEEEecCC
Q 046764 397 DS--LSLPFEAG-APGSQIIVTTRN 418 (1113)
Q Consensus 397 ~~--l~~~l~~~-~~gSrIivTTR~ 418 (1113)
.. +...+... ..|..||+||..
T Consensus 118 ~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 118 QRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 32 22222111 246778888864
No 210
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=48.97 E-value=85 Score=35.78 Aligned_cols=101 Identities=8% Similarity=0.009 Sum_probs=54.4
Q ss_pred cCcEEEEEEecCCCCCh-------hhh----hhhcccccC---CCCCcEEEEecCChhhHh-h--hCCCceEecCCCCHH
Q 046764 377 SGKKFLLVLGDVWNENY-------SDW----DSLSLPFEA---GAPGSQIIVTTRNRDVAA-I--MGSVRDYPLKESTKD 439 (1113)
Q Consensus 377 ~~kr~LiVLDDv~~~~~-------~~w----~~l~~~l~~---~~~gSrIivTTR~~~va~-~--~~~~~~~~l~~L~~~ 439 (1113)
..+..+|+||++..... ... ..+...+.. ...+..||.||...+... . -.....+.+...+.+
T Consensus 225 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~ 304 (444)
T 2zan_A 225 ENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAH 304 (444)
T ss_dssp HSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHH
T ss_pred HcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHH
Confidence 35678999999975411 011 112222211 234567777776543211 1 123357888888988
Q ss_pred HHHHHHHhcccCCCCCCCchhHHHHHHHHHHHhCCC-hHHHHH
Q 046764 440 DCLQVFTQHCLGMRDFSMQQSLKDISKKIVIRCNGL-PLAAKT 481 (1113)
Q Consensus 440 ~s~~LF~~~af~~~~~~~~~~l~~i~~~I~~~c~Gl-PLAi~~ 481 (1113)
+-..+|..++-... .... ......|++.+.|. +-.|..
T Consensus 305 ~r~~il~~~l~~~~-~~l~---~~~l~~la~~t~G~sgadl~~ 343 (444)
T 2zan_A 305 ARAAMFRLHLGSTQ-NSLT---EADFQELGRKTDGYSGADISI 343 (444)
T ss_dssp HHHHHHHHHHTTSC-EECC---HHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCCC---HHHHHHHHHHcCCCCHHHHHH
Confidence 88888887753221 1111 23445677888884 334433
No 211
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=48.08 E-value=7.3 Score=37.28 Aligned_cols=17 Identities=0% Similarity=-0.148 Sum_probs=13.7
Q ss_pred eEEEEEEeccc----chhhhc
Q 046764 336 LHLLSLSIMMP----NIIRFI 352 (1113)
Q Consensus 336 ~~vi~I~G~gG----tLA~~v 352 (1113)
-.+++|+|..| ||++.+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i 56 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAW 56 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 35788999888 888877
No 212
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=46.64 E-value=58 Score=35.54 Aligned_cols=116 Identities=9% Similarity=-0.012 Sum_probs=73.6
Q ss_pred CCCHHHHHHHHHHH-hcCcEEEEEEecCCC-CChhhhhhhcccccCCCCCcEEEEecCC-------hhhHhhhC-CCceE
Q 046764 362 TDELGLLQEKLKNQ-MSGKKFLLVLGDVWN-ENYSDWDSLSLPFEAGAPGSQIIVTTRN-------RDVAAIMG-SVRDY 431 (1113)
Q Consensus 362 ~~~~~~l~~~l~~~-L~~kr~LiVLDDv~~-~~~~~w~~l~~~l~~~~~gSrIivTTR~-------~~va~~~~-~~~~~ 431 (1113)
..+..++.+.+... +-+++-+||+|++.. .+...++.+...+..-.+++.+|++|.. ..+..... ...++
T Consensus 58 ~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~ 137 (343)
T 1jr3_D 58 NTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQV 137 (343)
T ss_dssp TCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEE
T ss_pred CCCHHHHHHHhcCcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEE
Confidence 35666776665443 456677888999865 4336677777666544557777766543 23444432 33689
Q ss_pred ecCCCCHHHHHHHHHhcccCCCCCCCchhHHHHHHHHHHHhCCChHHHHH
Q 046764 432 PLKESTKDDCLQVFTQHCLGMRDFSMQQSLKDISKKIVIRCNGLPLAAKT 481 (1113)
Q Consensus 432 ~l~~L~~~~s~~LF~~~af~~~~~~~~~~l~~i~~~I~~~c~GlPLAi~~ 481 (1113)
+..+++.++-.....+.+-..+ .... .+.+..+++.++|-..++..
T Consensus 138 ~~~~l~~~~l~~~l~~~~~~~g-~~i~---~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 138 TCQTPEQAQLPRWVAARAKQLN-LELD---DAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp EECCCCTTHHHHHHHHHHHHTT-CEEC---HHHHHHHHHSSTTCHHHHHH
T ss_pred EeeCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHhchHHHHHHH
Confidence 9999999888777766642221 1111 25577788889988876665
No 213
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=44.84 E-value=33 Score=37.07 Aligned_cols=112 Identities=6% Similarity=-0.019 Sum_probs=69.6
Q ss_pred EEEEEEeccc----chhhhcccc-------cCC-----cCC-CCCHHHHHHHHHHH----hcCcEEEEEEecCCCCChhh
Q 046764 337 HLLSLSIMMP----NIIRFIATA-------DQP-----VNG-TDELGLLQEKLKNQ----MSGKKFLLVLGDVWNENYSD 395 (1113)
Q Consensus 337 ~vi~I~G~gG----tLA~~vi~~-------~~~-----~~~-~~~~~~l~~~l~~~----L~~kr~LiVLDDv~~~~~~~ 395 (1113)
...-++|..| |+|+.+... ..+ ..+ ....+++.+.+... ..+++-++|+|++...+...
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~~a 98 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQA 98 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCHHH
Confidence 4566899998 566655221 110 011 23444444433322 13456789999998876667
Q ss_pred hhhhcccccCCCCCcEEEEecCC-hhhHhhhCCCceEecCCCCHHHHHHHHHhcc
Q 046764 396 WDSLSLPFEAGAPGSQIIVTTRN-RDVAAIMGSVRDYPLKESTKDDCLQVFTQHC 449 (1113)
Q Consensus 396 w~~l~~~l~~~~~gSrIivTTR~-~~va~~~~~~~~~~l~~L~~~~s~~LF~~~a 449 (1113)
.+.+...+....+.+++|.+|.. ..+....... +++++++++++..+...+.+
T Consensus 99 ~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 99 ANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 77777766554556777776654 3444444444 89999999999988887764
No 214
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=43.43 E-value=1.1e+02 Score=33.13 Aligned_cols=105 Identities=13% Similarity=0.013 Sum_probs=59.0
Q ss_pred cCcEEEEEEecCCCCChhhhhhhcccccCC-CCCc--EEEEecCChh---------hHhhhCCCceEecCCCCHHHHHHH
Q 046764 377 SGKKFLLVLGDVWNENYSDWDSLSLPFEAG-APGS--QIIVTTRNRD---------VAAIMGSVRDYPLKESTKDDCLQV 444 (1113)
Q Consensus 377 ~~kr~LiVLDDv~~~~~~~w~~l~~~l~~~-~~gS--rIivTTR~~~---------va~~~~~~~~~~l~~L~~~~s~~L 444 (1113)
.+++++|+||+++.-. +-+.+...+.+. ..++ .||.++...+ +...++ ...+..++++.++-.++
T Consensus 130 ~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~I 206 (318)
T 3te6_A 130 KKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSLKAH-FTEIKLNKVDKNELQQM 206 (318)
T ss_dssp GSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTCHHHHTT-EEEEECCCCCHHHHHHH
T ss_pred cCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccchhhcchhhhccCC-ceEEEeCCCCHHHHHHH
Confidence 4678999999997652 222222222110 1223 2333343322 122332 24789999999999998
Q ss_pred HHhcccCCCC-----------------------------------CCCchhHHHHHHHHHHHhCCChHHHHHHHh
Q 046764 445 FTQHCLGMRD-----------------------------------FSMQQSLKDISKKIVIRCNGLPLAAKTLAG 484 (1113)
Q Consensus 445 F~~~af~~~~-----------------------------------~~~~~~l~~i~~~I~~~c~GlPLAi~~ig~ 484 (1113)
+..++-.... .-.+..++-+|++++...|-.-.|+.++-.
T Consensus 207 l~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~ 281 (318)
T 3te6_A 207 IITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSGSTEKAFKICEA 281 (318)
T ss_dssp HHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHCSHHHHHHHHHH
T ss_pred HHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHHHHHHHHHhhCChHHHHHHHHHH
Confidence 8877522110 012334666677777777777788777544
No 215
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=41.30 E-value=1.1e+02 Score=33.85 Aligned_cols=70 Identities=6% Similarity=0.040 Sum_probs=40.3
Q ss_pred CcEEEEecCChh-hHhh--hCCCceEecCCCCHHHHHHHHHhcccCCCCCCCchhHHHHHHHHHHHhCCChH-HHHHH
Q 046764 409 GSQIIVTTRNRD-VAAI--MGSVRDYPLKESTKDDCLQVFTQHCLGMRDFSMQQSLKDISKKIVIRCNGLPL-AAKTL 482 (1113)
Q Consensus 409 gSrIivTTR~~~-va~~--~~~~~~~~l~~L~~~~s~~LF~~~af~~~~~~~~~~l~~i~~~I~~~c~GlPL-Ai~~i 482 (1113)
.-.||.||...+ +-.. -.....+.+...+.++-..++...+-.... ... .+....|++.+.|..- ++..+
T Consensus 252 ~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~l~---~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 252 RVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS-PLT---QKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC-CSC---HHHHHHHHHHTTTCCHHHHHHH
T ss_pred CEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC-CCC---HHHHHHHHHHcCCCCHHHHHHH
Confidence 345666665432 1111 122356889999999999988877533221 111 2355678888888543 55444
No 216
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=37.59 E-value=81 Score=33.70 Aligned_cols=113 Identities=8% Similarity=-0.009 Sum_probs=59.6
Q ss_pred EEEEEEeccc----chhhhcccccCC---------c---CCCCCHHHHHHHHHHHhcCcEEEEEEecCCCCCh-------
Q 046764 337 HLLSLSIMMP----NIIRFIATADQP---------V---NGTDELGLLQEKLKNQMSGKKFLLVLGDVWNENY------- 393 (1113)
Q Consensus 337 ~vi~I~G~gG----tLA~~vi~~~~~---------~---~~~~~~~~l~~~l~~~L~~kr~LiVLDDv~~~~~------- 393 (1113)
+.+.++|..| |+|+.+...... . ........+...+...-.....+|++|++.....
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~ 129 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIG 129 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTC
T ss_pred ceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcC
Confidence 4577899988 788887111000 0 0001112233333443445678999999963200
Q ss_pred -------hhhhhhccccc--CCCCCcEEEEecCChhhH-hh-h---CCCceEecCCCCHHHHHHHHHhcc
Q 046764 394 -------SDWDSLSLPFE--AGAPGSQIIVTTRNRDVA-AI-M---GSVRDYPLKESTKDDCLQVFTQHC 449 (1113)
Q Consensus 394 -------~~w~~l~~~l~--~~~~gSrIivTTR~~~va-~~-~---~~~~~~~l~~L~~~~s~~LF~~~a 449 (1113)
.....+...+. ....+..||.||...+.. .. . .....+.+...+.++-.+++...+
T Consensus 130 ~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l 199 (301)
T 3cf0_A 130 DGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 199 (301)
T ss_dssp CSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHH
Confidence 00122222221 113456777777765322 11 1 233578999999998888887664
No 217
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=36.65 E-value=1.8e+02 Score=27.38 Aligned_cols=58 Identities=14% Similarity=0.136 Sum_probs=34.7
Q ss_pred hhccchhhHHHhHHHHHHHHHHhchHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhhhhhhhh
Q 046764 222 MGRIGASAAVFGFLTMMGTLIEVNPAVINAVIDDAEEKQKREQSVKMWLGELQNLAYDVDVLLD 285 (1113)
Q Consensus 222 ~~~~~d~~~i~~e~~~~~~fl~~~l~~i~~~l~dae~~~~~~~~v~~W~~~lr~~ayd~ed~id 285 (1113)
.++.+.++-++||+..++.-+.. +..-+...+. ..+.-|..||.+...-|..+.+..|
T Consensus 92 ~eK~K~~e~l~DEl~aLqlq~n~----lE~kl~kLq~--EN~~LV~RWM~rk~qEAe~MN~an~ 149 (152)
T 3a7p_A 92 ALKNKNTERLNAALISGTIENNV----LQQKLSDLKK--EHSQLVARWLKKTEKETEAMNSEID 149 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44477788888888877766554 2222222221 2557899999999888877666544
No 218
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=35.20 E-value=72 Score=36.96 Aligned_cols=112 Identities=9% Similarity=0.019 Sum_probs=60.3
Q ss_pred EEEEEeccc----chhhhcccccC----------CcC--CCCCHHHHHHHHHHHhcCcEEEEEEecCCCCCh------h-
Q 046764 338 LLSLSIMMP----NIIRFIATADQ----------PVN--GTDELGLLQEKLKNQMSGKKFLLVLGDVWNENY------S- 394 (1113)
Q Consensus 338 vi~I~G~gG----tLA~~vi~~~~----------~~~--~~~~~~~l~~~l~~~L~~kr~LiVLDDv~~~~~------~- 394 (1113)
-+-|+|..| ++|+.+..... -.. .......+...+...-.++..+|+||++..... .
T Consensus 240 ~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~ 319 (489)
T 3hu3_A 240 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE 319 (489)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCH
T ss_pred cEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccch
Confidence 466889988 78877711100 000 111122344445555567778999999932100 0
Q ss_pred ----hhhhhccccc--CCCCCcEEEEecCChhh-Hhh----hCCCceEecCCCCHHHHHHHHHhcc
Q 046764 395 ----DWDSLSLPFE--AGAPGSQIIVTTRNRDV-AAI----MGSVRDYPLKESTKDDCLQVFTQHC 449 (1113)
Q Consensus 395 ----~w~~l~~~l~--~~~~gSrIivTTR~~~v-a~~----~~~~~~~~l~~L~~~~s~~LF~~~a 449 (1113)
....+...+. ....+-+||.||...+- -.. ......+.+...+.++-.+++..++
T Consensus 320 ~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~ 385 (489)
T 3hu3_A 320 VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (489)
T ss_dssp HHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHH
Confidence 0111222222 12234566667765422 111 1233578999999999999998775
No 219
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=33.35 E-value=56 Score=34.87 Aligned_cols=40 Identities=13% Similarity=0.174 Sum_probs=23.6
Q ss_pred cEEEEEEecCCCCChhhhhhhcccccCCC-----------CCcEEEEecCC
Q 046764 379 KKFLLVLGDVWNENYSDWDSLSLPFEAGA-----------PGSQIIVTTRN 418 (1113)
Q Consensus 379 kr~LiVLDDv~~~~~~~w~~l~~~l~~~~-----------~gSrIivTTR~ 418 (1113)
..-+++||++..........+...+.... ....||.||..
T Consensus 119 ~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~ 169 (311)
T 4fcw_A 119 PYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNL 169 (311)
T ss_dssp SSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEEST
T ss_pred CCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEeccc
Confidence 34689999997775555555544332211 23447777765
No 220
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=31.06 E-value=12 Score=37.48 Aligned_cols=37 Identities=19% Similarity=0.131 Sum_probs=19.5
Q ss_pred EEEEecCCCCChhhhhhh--cc-cccCC-CCCcEEEEecCC
Q 046764 382 LLVLGDVWNENYSDWDSL--SL-PFEAG-APGSQIIVTTRN 418 (1113)
Q Consensus 382 LiVLDDv~~~~~~~w~~l--~~-~l~~~-~~gSrIivTTR~ 418 (1113)
+|||||++......|..- .. .+... ..+.++|+||..
T Consensus 118 ~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 118 VLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp EEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 899999976543444322 11 11111 235568888774
No 221
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.93 E-value=2e+02 Score=32.26 Aligned_cols=134 Identities=11% Similarity=0.093 Sum_probs=69.5
Q ss_pred EEEEEEeccc----chhhhc----------ccccCCcCC-CC-CHHHHHHHHHHHhcCcEEEEEEecCCCCCh-------
Q 046764 337 HLLSLSIMMP----NIIRFI----------ATADQPVNG-TD-ELGLLQEKLKNQMSGKKFLLVLGDVWNENY------- 393 (1113)
Q Consensus 337 ~vi~I~G~gG----tLA~~v----------i~~~~~~~~-~~-~~~~l~~~l~~~L~~kr~LiVLDDv~~~~~------- 393 (1113)
+=|-++|+.| .+|++| +........ .. ....+...+...-....+.|.+|+++..-.
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~ 262 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSG 262 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSS
T ss_pred CceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCC
Confidence 4566899999 777777 222210011 11 222233333333356789999999975311
Q ss_pred -h--hhh----hhccccc--CCCCCcEEEEecCChhhHhh-----hCCCceEecCCCCHHHHHHHHHhcccCCCCCCCch
Q 046764 394 -S--DWD----SLSLPFE--AGAPGSQIIVTTRNRDVAAI-----MGSVRDYPLKESTKDDCLQVFTQHCLGMRDFSMQQ 459 (1113)
Q Consensus 394 -~--~w~----~l~~~l~--~~~~gSrIivTTR~~~va~~-----~~~~~~~~l~~L~~~~s~~LF~~~af~~~~~~~~~ 459 (1113)
. ... .+...+. ....+-.||.||...+.... -.-+..+++...+.++-.++|..+.-+ .......
T Consensus 263 ~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~-~~l~~dv 341 (405)
T 4b4t_J 263 GGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRK-MNLTRGI 341 (405)
T ss_dssp GGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT-SBCCSSC
T ss_pred CCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcC-CCCCccC
Confidence 0 011 1111111 12334556777765443211 134578999999998888888766522 2111122
Q ss_pred hHHHHHHHHHHHhCCC
Q 046764 460 SLKDISKKIVIRCNGL 475 (1113)
Q Consensus 460 ~l~~i~~~I~~~c~Gl 475 (1113)
++ ..+++.+.|.
T Consensus 342 dl----~~lA~~t~G~ 353 (405)
T 4b4t_J 342 NL----RKVAEKMNGC 353 (405)
T ss_dssp CH----HHHHHHCCSC
T ss_pred CH----HHHHHHCCCC
Confidence 33 3455667664
No 222
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=29.42 E-value=29 Score=32.58 Aligned_cols=38 Identities=13% Similarity=-0.127 Sum_probs=24.2
Q ss_pred EEEEEecCCCCChhhhhhhcccccCCCCCcEEEEecCC
Q 046764 381 FLLVLGDVWNENYSDWDSLSLPFEAGAPGSQIIVTTRN 418 (1113)
Q Consensus 381 ~LiVLDDv~~~~~~~w~~l~~~l~~~~~gSrIivTTR~ 418 (1113)
-.|+||++..........+...+.......+||.||..
T Consensus 78 g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 78 GTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp SCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred cEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 47899999877655555555544433445677777764
No 223
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=26.75 E-value=51 Score=40.61 Aligned_cols=66 Identities=11% Similarity=0.108 Sum_probs=38.3
Q ss_pred EEEEEecCCCCChhhhhhhcccccCC-----------CCCcEEEEecCC-----------------hhhHhhhCCCceEe
Q 046764 381 FLLVLGDVWNENYSDWDSLSLPFEAG-----------APGSQIIVTTRN-----------------RDVAAIMGSVRDYP 432 (1113)
Q Consensus 381 ~LiVLDDv~~~~~~~w~~l~~~l~~~-----------~~gSrIivTTR~-----------------~~va~~~~~~~~~~ 432 (1113)
-.|+||++...+.+....+...+..+ ....+||+||.. .++...+ +.++.
T Consensus 581 ~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl--~~~i~ 658 (758)
T 3pxi_A 581 SVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRI--DEIIV 658 (758)
T ss_dssp SEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTS--SEEEE
T ss_pred eEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhC--CeEEe
Confidence 48899999877655555554443321 235688888873 1111222 24778
Q ss_pred cCCCCHHHHHHHHHhc
Q 046764 433 LKESTKDDCLQVFTQH 448 (1113)
Q Consensus 433 l~~L~~~~s~~LF~~~ 448 (1113)
+.+++.++-..++...
T Consensus 659 ~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 659 FHSLEKKHLTEIVSLM 674 (758)
T ss_dssp CC--CHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH
Confidence 8888887776666544
No 224
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=26.12 E-value=27 Score=36.61 Aligned_cols=40 Identities=10% Similarity=0.185 Sum_probs=22.7
Q ss_pred cEEEEecCChhhHh-h-h---CCCceEecCCCCHHHHHHHHHhcc
Q 046764 410 SQIIVTTRNRDVAA-I-M---GSVRDYPLKESTKDDCLQVFTQHC 449 (1113)
Q Consensus 410 SrIivTTR~~~va~-~-~---~~~~~~~l~~L~~~~s~~LF~~~a 449 (1113)
..||.||...+... . . .....+.++..+.++-.+++...+
T Consensus 152 v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 152 VIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp CEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred EEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 46777776553211 1 1 123457777777777766666553
No 225
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=25.00 E-value=1.1e+02 Score=32.47 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=16.9
Q ss_pred ceEecCCCCHHHHHHHHHhc
Q 046764 429 RDYPLKESTKDDCLQVFTQH 448 (1113)
Q Consensus 429 ~~~~l~~L~~~~s~~LF~~~ 448 (1113)
..+.+++++.++-..++..+
T Consensus 195 ~~i~~~~~~~~~~~~il~~~ 214 (310)
T 1ofh_A 195 IRVELTALSAADFERILTEP 214 (310)
T ss_dssp EEEECCCCCHHHHHHHHHSS
T ss_pred ceEEcCCcCHHHHHHHHHhh
Confidence 56999999999988888764
No 226
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=24.46 E-value=1.2e+02 Score=34.79 Aligned_cols=111 Identities=7% Similarity=0.056 Sum_probs=59.9
Q ss_pred EEEEeccc----chhhhc----------ccccCCcCCC--CCHHHHHHHHHHHhcCcEEEEEEecCCCCCh---------
Q 046764 339 LSLSIMMP----NIIRFI----------ATADQPVNGT--DELGLLQEKLKNQMSGKKFLLVLGDVWNENY--------- 393 (1113)
Q Consensus 339 i~I~G~gG----tLA~~v----------i~~~~~~~~~--~~~~~l~~~l~~~L~~kr~LiVLDDv~~~~~--------- 393 (1113)
|.++|..| |+|+.+ +......... .....+...+.....+...+|+||++.....
T Consensus 52 vLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~ 131 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGG 131 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC--------
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcC
Confidence 56899988 888888 1111100011 1122334445555566788999999954210
Q ss_pred -h----hhhhhccccc--CCCCCcEEEEecCChhhHhh--h---CCCceEecCCCCHHHHHHHHHhcc
Q 046764 394 -S----DWDSLSLPFE--AGAPGSQIIVTTRNRDVAAI--M---GSVRDYPLKESTKDDCLQVFTQHC 449 (1113)
Q Consensus 394 -~----~w~~l~~~l~--~~~~gSrIivTTR~~~va~~--~---~~~~~~~l~~L~~~~s~~LF~~~a 449 (1113)
. ....+...+. ....+-.||.||...+.... . ..+..+.+...+.++-.+++..++
T Consensus 132 ~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~ 199 (476)
T 2ce7_A 132 HDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHT 199 (476)
T ss_dssp -CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHH
Confidence 0 1122222221 11245677778877654321 1 123478888888877777776654
No 227
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=23.41 E-value=2e+02 Score=29.48 Aligned_cols=111 Identities=8% Similarity=0.091 Sum_probs=54.9
Q ss_pred EEEEeccc----chhhhc----------ccccC--CcCCCCCHHHHHHHHHHHhcCcEEEEEEecCCCCCh---------
Q 046764 339 LSLSIMMP----NIIRFI----------ATADQ--PVNGTDELGLLQEKLKNQMSGKKFLLVLGDVWNENY--------- 393 (1113)
Q Consensus 339 i~I~G~gG----tLA~~v----------i~~~~--~~~~~~~~~~l~~~l~~~L~~kr~LiVLDDv~~~~~--------- 393 (1113)
+.|+|..| |+|+.+ +.... ..........+...++..-.....++++|++.....
T Consensus 48 vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~ 127 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGG 127 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCT
T ss_pred EEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCC
Confidence 66899988 888887 11111 000112233444445554455667999999832100
Q ss_pred -h----hhhhhccccc--CCCCCcEEEEecCChh-hHhhh----CCCceEecCCCCHHHHHHHHHhcc
Q 046764 394 -S----DWDSLSLPFE--AGAPGSQIIVTTRNRD-VAAIM----GSVRDYPLKESTKDDCLQVFTQHC 449 (1113)
Q Consensus 394 -~----~w~~l~~~l~--~~~~gSrIivTTR~~~-va~~~----~~~~~~~l~~L~~~~s~~LF~~~a 449 (1113)
. ....+...+. ....+-.||.||...+ +.... ..+..+.+...+.++-.+++..++
T Consensus 128 ~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~ 195 (257)
T 1lv7_A 128 HDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 195 (257)
T ss_dssp TCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHH
Confidence 0 0111111111 1123456777776543 21111 123467777777777666665543
No 228
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=23.24 E-value=2.3e+02 Score=30.54 Aligned_cols=48 Identities=17% Similarity=0.074 Sum_probs=34.0
Q ss_pred ceEecCCCCHHHHHHHHHhcccCCCCCCCchhHHHHHHHHHHHhCCChHHHH
Q 046764 429 RDYPLKESTKDDCLQVFTQHCLGMRDFSMQQSLKDISKKIVIRCNGLPLAAK 480 (1113)
Q Consensus 429 ~~~~l~~L~~~~s~~LF~~~af~~~~~~~~~~l~~i~~~I~~~c~GlPLAi~ 480 (1113)
....+++.+.++-.+++.+.+-... .. .-.+.+..|++.+.|.|-.+.
T Consensus 173 l~~~Ld~~~~~~l~~iL~~~~~~~~-~~---~~~~~~~~ia~~~~G~~R~a~ 220 (334)
T 1in4_A 173 IILELDFYTVKELKEIIKRAASLMD-VE---IEDAAAEMIAKRSRGTPRIAI 220 (334)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHTT-CC---BCHHHHHHHHHTSTTCHHHHH
T ss_pred ceeeCCCCCHHHHHHHHHHHHHHcC-CC---cCHHHHHHHHHhcCCChHHHH
Confidence 3588999999999999987752211 11 123567889999999996544
No 229
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.77 E-value=2.5e+02 Score=31.70 Aligned_cols=114 Identities=13% Similarity=0.104 Sum_probs=61.2
Q ss_pred eEEEEEEeccc----chhhhc----------ccccCCcCC-CCCHHH-HHHHHHHHhcCcEEEEEEecCCCCCh------
Q 046764 336 LHLLSLSIMMP----NIIRFI----------ATADQPVNG-TDELGL-LQEKLKNQMSGKKFLLVLGDVWNENY------ 393 (1113)
Q Consensus 336 ~~vi~I~G~gG----tLA~~v----------i~~~~~~~~-~~~~~~-l~~~l~~~L~~kr~LiVLDDv~~~~~------ 393 (1113)
.+=|-++|+.| ++|++| +........ ....+. +...+...-....++|.+|+++..-.
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~ 294 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEG 294 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCC
Confidence 45677899999 777777 222110011 111222 33333333356789999999975310
Q ss_pred h----h----hhhhccccc--CCCCCcEEEEecCChhhHhh-h-C---CCceEecCCCCHHHHHHHHHhcc
Q 046764 394 S----D----WDSLSLPFE--AGAPGSQIIVTTRNRDVAAI-M-G---SVRDYPLKESTKDDCLQVFTQHC 449 (1113)
Q Consensus 394 ~----~----w~~l~~~l~--~~~~gSrIivTTR~~~va~~-~-~---~~~~~~l~~L~~~~s~~LF~~~a 449 (1113)
. . ...+...+. ....+-.||.||...+.... + . -+..+++...+.++-.++|..++
T Consensus 295 ~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~ 365 (437)
T 4b4t_L 295 TSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHT 365 (437)
T ss_dssp CSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHh
Confidence 0 0 111222221 22345678888876543322 1 1 23578888888888888887664
No 230
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.50 E-value=2.1e+02 Score=32.32 Aligned_cols=54 Identities=6% Similarity=0.038 Sum_probs=30.5
Q ss_pred eEEEEEEeccc----chhhhc----------ccccCCcCC--CCCHHHHHHHHHHHhcCcEEEEEEecCC
Q 046764 336 LHLLSLSIMMP----NIIRFI----------ATADQPVNG--TDELGLLQEKLKNQMSGKKFLLVLGDVW 389 (1113)
Q Consensus 336 ~~vi~I~G~gG----tLA~~v----------i~~~~~~~~--~~~~~~l~~~l~~~L~~kr~LiVLDDv~ 389 (1113)
.+=|-++|+.| ++|+++ +........ ......+...+...-....+.|.+|+++
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD 275 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVD 275 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHHHcCCCeeechhhh
Confidence 55688999999 677777 222110011 1122233333443445667999999984
No 231
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=20.46 E-value=59 Score=32.49 Aligned_cols=68 Identities=13% Similarity=0.126 Sum_probs=36.4
Q ss_pred HHHHHHHhcCcEE-EEEEecCCCC---ChhhhhhhcccccCCCCCcEEEEecCChhhHhhhCCCceEecCCC
Q 046764 369 QEKLKNQMSGKKF-LLVLGDVWNE---NYSDWDSLSLPFEAGAPGSQIIVTTRNRDVAAIMGSVRDYPLKES 436 (1113)
Q Consensus 369 ~~~l~~~L~~kr~-LiVLDDv~~~---~~~~w~~l~~~l~~~~~gSrIivTTR~~~va~~~~~~~~~~l~~L 436 (1113)
....++.+.+.+| |||||++-.. .....+.+...+.......-||+|+|...-.-.--++.+-+|+..
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~v 180 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADTVSELRPV 180 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECCCS
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCcceeeecce
Confidence 3345666665555 9999998321 112233444444444456679999998432111123345555544
Done!