Query 046768
Match_columns 314
No_of_seqs 152 out of 485
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 07:00:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046768.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046768hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l2r_A Antimicrobial peptide e 31.3 14 0.00047 24.2 0.6 10 118-127 9-18 (37)
2 1m3w_A H10H24; four-helix bund 13.1 1.3E+02 0.0044 18.8 2.2 16 6-21 12-27 (32)
3 3c5t_B Exendin-4, exenatide; l 7.2 2.7E+02 0.0092 17.6 2.2 22 17-38 6-27 (31)
4 2aby_A Hypothetical protein TA 6.8 1.8E+02 0.0062 24.1 1.5 13 5-17 91-103 (146)
5 2qlw_A RHAU; mutarotase, isome 5.6 93 0.0032 26.2 -0.9 11 117-127 18-28 (144)
6 1e91_A Paired amphipathic heli 4.7 5.7E+02 0.02 19.0 3.2 12 2-13 29-40 (85)
7 2vqe_N 30S ribosomal protein S 4.5 3.6E+02 0.012 19.2 1.8 16 118-133 41-56 (61)
8 1hek_A GAG polyprotein, core p 4.4 9.6E+02 0.033 19.3 4.4 68 3-74 13-89 (131)
9 2cmy_B Beta trypsin, veronica 4.3 2.1E+02 0.0071 18.0 0.3 10 271-280 19-28 (34)
10 2cr7_A Paired amphipathic heli 4.2 5.1E+02 0.018 19.0 2.5 24 2-25 32-59 (80)
No 1
>2l2r_A Antimicrobial peptide ecamp1; disulfide-stabilized helical hairpin, antifungal peptide, antimicrobial protein; NMR {Echinochloa crus-galli}
Probab=31.34 E-value=14 Score=24.21 Aligned_cols=10 Identities=40% Similarity=0.597 Sum_probs=8.6
Q ss_pred HHHHHHHHhc
Q 046768 118 LQCLRLLFEE 127 (314)
Q Consensus 118 ~QCLrry~dt 127 (314)
.||+|+|.|.
T Consensus 9 rqC~Rr~ede 18 (37)
T 2l2r_A 9 SQCMRRHEDE 18 (37)
T ss_dssp HHHHHHTSSC
T ss_pred HHHHHhccCC
Confidence 6999999875
No 2
>1m3w_A H10H24; four-helix bundle, heme binding, maquette, heme binding protein, electron transport, de novo protein; 2.80A {Synthetic} SCOP: k.8.1.1
Probab=13.08 E-value=1.3e+02 Score=18.78 Aligned_cols=16 Identities=38% Similarity=0.634 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhHHHHH
Q 046768 6 KIMKKYDEVSKLMERV 21 (314)
Q Consensus 6 ~~~~~~~~~~~l~~~~ 21 (314)
..||||.++-+|-+++
T Consensus 12 eflkkfeellklheer 27 (32)
T 1m3w_A 12 EFLKKFEELLKLHEER 27 (32)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4689999988887665
No 3
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=7.22 E-value=2.7e+02 Score=17.60 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhhcCCCCccc
Q 046768 17 LMERVETTFIKHFSNSNRSKGF 38 (314)
Q Consensus 17 l~~~~~~l~i~~Fa~~~r~~a~ 38 (314)
|.++...-|+.|+-+|.++.|.
T Consensus 6 Le~~aakdFv~WL~ngk~~~~~ 27 (31)
T 3c5t_B 6 MEEEAVRLFIEWLKNGGPSSGA 27 (31)
T ss_dssp HHHHHHHHHHHHHHTTGGGC--
T ss_pred HHHHHHHHHHHHHHhCCCCCCC
Confidence 5667788899999998877764
No 4
>2aby_A Hypothetical protein TA0743; helix-turn-helix, unknown function; NMR {Thermoplasma acidophilum}
Probab=6.82 E-value=1.8e+02 Score=24.05 Aligned_cols=13 Identities=38% Similarity=0.718 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhH
Q 046768 5 SKIMKKYDEVSKL 17 (314)
Q Consensus 5 ~~~~~~~~~~~~l 17 (314)
.|+++|||.+|++
T Consensus 91 kk~re~FD~~Sk~ 103 (146)
T 2aby_A 91 KKVREKFDENSRM 103 (146)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHhhhhhhh
Confidence 4799999999965
No 5
>2qlw_A RHAU; mutarotase, isomerase; HET: MSE; 1.60A {Rhizobium leguminosarum BV} PDB: 2qlx_A*
Probab=5.56 E-value=93 Score=26.16 Aligned_cols=11 Identities=27% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHhc
Q 046768 117 LLQCLRLLFEE 127 (314)
Q Consensus 117 ~~QCLrry~dt 127 (314)
=+||+|+|++.
T Consensus 18 ~~~~~~~~~~~ 28 (144)
T 2qlw_A 18 GQQMGRDLYDD 28 (144)
T ss_dssp -----------
T ss_pred hHHHHHHHhcc
Confidence 47999999976
No 6
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=4.72 E-value=5.7e+02 Score=18.98 Aligned_cols=12 Identities=25% Similarity=0.623 Sum_probs=8.9
Q ss_pred hhHHHHHHHHHH
Q 046768 2 LAFSKIMKKYDE 13 (314)
Q Consensus 2 ~~~~~~~~~~~~ 13 (314)
..|..||+.|.+
T Consensus 29 ~~FL~il~~yk~ 40 (85)
T 1e91_A 29 RSFLEILHTYQK 40 (85)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 367888888865
No 7
>2vqe_N 30S ribosomal protein S14 type Z; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: g.39.1.7 PDB: 1gix_Q* 1hnw_N* 1hnx_N* 1hnz_N* 1hr0_N 1ibk_N* 1ibl_N* 1ibm_N 1jgo_Q* 1jgp_Q* 1jgq_Q* 1ml5_Q* 1xmo_N* 1xmq_N* 1xnq_N* 1xnr_N* 1yl4_Q 2b64_N* 2b9m_N* 2b9o_N* ...
Probab=4.52 E-value=3.6e+02 Score=19.20 Aligned_cols=16 Identities=25% Similarity=0.102 Sum_probs=12.6
Q ss_pred HHHHHHHHhcCCCccc
Q 046768 118 LQCLRLLFEEKYPMQG 133 (314)
Q Consensus 118 ~QCLrry~dt~~~~hL 133 (314)
.||+|++...|..|.+
T Consensus 41 R~~FRe~A~~g~lpGv 56 (61)
T 2vqe_N 41 RICLRELAHKGQLPGV 56 (61)
T ss_dssp HHHHHHHHHHTCSSSC
T ss_pred HHHHHHHHhCCccCCe
Confidence 7999999988876543
No 8
>1hek_A GAG polyprotein, core protein P15; viral protein, membrane-binding switching; 2.8A {Equine infectious anemia virus} SCOP: a.61.1.5
Probab=4.44 E-value=9.6e+02 Score=19.31 Aligned_cols=68 Identities=18% Similarity=0.098 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHH---------hHHHHHHHHHHHHhhcCCCCcccccchhhHHHHHHHHhhcccccchhhHHHHHHHhhH
Q 046768 3 AFSKIMKKYDEVS---------KLMERVETTFIKHFSNSNRSKGFLSGRTAAPLLFAMLFLPFNILYRSSRFFFLTCLFH 73 (314)
Q Consensus 3 ~~~~~~~~~~~~~---------~l~~~~~~l~i~~Fa~~~r~~a~~~~~~~~p~~~~~l~~P~~i~~~~~R~~~l~~l~r 73 (314)
..+|-|||-.||. +=-.-..||-=.+--+|--|.-+--.++.+|++==+ ...+-.+.|--|=++-+-
T Consensus 13 twskaLkKLEKVtVqGsqklt~gNcnWALslvDL~HdTn~~KeKDWqLrdviPLLeDV----~qtLsGqEreAFekTWWa 88 (131)
T 1hek_A 13 TWSKALKKLEKVTVQGSQKLTTGNCNWALSLVDLFHDTNFVKEKDWQLRDVIPLLEDV----TQTLSGQEREAFERTWWA 88 (131)
T ss_dssp CHHHHHHHHHHSCCSSSCCCCHHHHHHHHHHHHHHTTCCTTTSSCCCHHHHHHHHHHH----HTTCCSTHHHHHHHHHHH
T ss_pred cHHHHHHHHHhheeecccccccCcchhHHHHHHHHccccccccccchHHHhHHHHHHH----HHHccchHHHHHHHHHHH
Confidence 4689999999987 111111222211122333444456667888965322 122445555555555444
Q ss_pred h
Q 046768 74 C 74 (314)
Q Consensus 74 ~ 74 (314)
+
T Consensus 89 I 89 (131)
T 1hek_A 89 I 89 (131)
T ss_dssp H
T ss_pred H
Confidence 3
No 9
>2cmy_B Beta trypsin, veronica hederifolia trypsin inhibitor; acyl-enzyme intermediate, serine protease inhibitor, zymogen protease, digestion; 2.25A {Veronica hederifolia} SCOP: g.2.4.1
Probab=4.25 E-value=2.1e+02 Score=18.03 Aligned_cols=10 Identities=40% Similarity=0.594 Sum_probs=6.6
Q ss_pred HHHHhhhcee
Q 046768 271 LEIIRRSIWN 280 (314)
Q Consensus 271 lEI~RR~iWn 280 (314)
-|++||++=|
T Consensus 19 pellrrcldn 28 (34)
T 2cmy_B 19 PELLRRCLDN 28 (34)
T ss_dssp CHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4778887543
No 10
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=4.21 E-value=5.1e+02 Score=19.04 Aligned_cols=24 Identities=29% Similarity=0.592 Sum_probs=0.0
Q ss_pred hhHHHHHHHHH----HHHhHHHHHHHHH
Q 046768 2 LAFSKIMKKYD----EVSKLMERVETTF 25 (314)
Q Consensus 2 ~~~~~~~~~~~----~~~~l~~~~~~l~ 25 (314)
..|..|||.|. .....-++|..||
T Consensus 32 ~~FL~im~~fk~~~~~~~~v~~rV~~Lf 59 (80)
T 2cr7_A 32 NGFLEIMKEFKSQSIDTPGVIRRVSQLF 59 (80)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHH
Done!