Query 046768
Match_columns 314
No_of_seqs 152 out of 485
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 07:00:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046768.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046768hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nh2d1 a.32.1.1 (D:5-54) Smal 11.2 47 0.0034 21.7 1.5 11 5-15 34-44 (50)
2 d1nvpd1 a.32.1.1 (D:3-53) Smal 8.2 72 0.0052 20.8 1.5 11 5-15 32-42 (51)
3 d1heka_ a.61.1.5 (A:) EIAV mat 5.7 3.4E+02 0.025 19.5 4.4 46 3-48 13-67 (116)
4 d1ouoa_ d.4.1.6 (A:) Periplasm 5.7 49 0.0035 27.3 -0.6 9 282-290 56-64 (210)
5 d3pvia_ c.52.1.6 (A:) Restrict 4.9 2.8E+02 0.021 21.2 3.6 31 114-144 8-43 (156)
6 d2o8ra2 d.322.1.2 (A:113-317) 4.8 72 0.0053 25.8 -0.1 40 270-311 95-134 (205)
7 d1tqga_ a.24.10.3 (A:) Chemota 3.7 2.1E+02 0.015 19.5 1.8 19 10-28 56-74 (105)
8 d2f05a1 a.59.1.1 (A:1-85) Sin3 3.3 4.1E+02 0.03 17.8 3.1 11 3-13 30-40 (85)
9 d1s5qb_ a.59.1.1 (B:) Sin3A {M 3.3 3.8E+02 0.028 18.2 3.0 11 3-13 33-43 (89)
10 d3bqoa1 a.146.1.1 (A:62-265) T 3.1 2.8E+02 0.02 22.5 2.2 15 115-129 62-76 (204)
No 1
>d1nh2d1 a.32.1.1 (D:5-54) Small chain TOA2, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.25 E-value=47 Score=21.65 Aligned_cols=11 Identities=18% Similarity=0.664 Sum_probs=9.2
Q ss_pred HHHHHHHHHHH
Q 046768 5 SKIMKKYDEVS 15 (314)
Q Consensus 5 ~~~~~~~~~~~ 15 (314)
.|+|.+|||+-
T Consensus 34 ~kVL~qFDk~i 44 (50)
T d1nh2d1 34 MRVLETFDKVV 44 (50)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 58999999963
No 2
>d1nvpd1 a.32.1.1 (D:3-53) Small chain TOA2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.24 E-value=72 Score=20.80 Aligned_cols=11 Identities=9% Similarity=0.425 Sum_probs=9.2
Q ss_pred HHHHHHHHHHH
Q 046768 5 SKIMKKYDEVS 15 (314)
Q Consensus 5 ~~~~~~~~~~~ 15 (314)
.|+|.+|||.-
T Consensus 32 ~kVL~qFDk~i 42 (51)
T d1nvpd1 32 LQVLLQFDKAI 42 (51)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 48999999964
No 3
>d1heka_ a.61.1.5 (A:) EIAV matrix antigen {Equine infectious anemia virus, EIAV [TaxId: 11665]}
Probab=5.68 E-value=3.4e+02 Score=19.49 Aligned_cols=46 Identities=24% Similarity=0.227 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHH-----hH----HHHHHHHHHHHhhcCCCCcccccchhhHHHH
Q 046768 3 AFSKIMKKYDEVS-----KL----MERVETTFIKHFSNSNRSKGFLSGRTAAPLL 48 (314)
Q Consensus 3 ~~~~~~~~~~~~~-----~l----~~~~~~l~i~~Fa~~~r~~a~~~~~~~~p~~ 48 (314)
..+|-|||..||. +| -.-..|+.=.+--+|--|.-+-..++.+|++
T Consensus 13 twskalkklekvtvqgsqkl~~gncnwalslvdlfhdtn~~kekdwqlrdiipll 67 (116)
T d1heka_ 13 TWSKALKKLEKVTVQGSQKLTTGNCNWALSLVDLFHDTNFVKEKDWQLRDVIPLL 67 (116)
T ss_dssp CHHHHHHHHHHSCCSSSCCCCHHHHHHHHHHHHHHTTCCTTTSSCCCHHHHHHHH
T ss_pred hHHHHHHHHHhheeecccccccCcchhHHHHHHHHccccccccccchHHhhhHHH
Confidence 4689999999987 11 1111222211112233344455667888965
No 4
>d1ouoa_ d.4.1.6 (A:) Periplasmic endonuclease Vvn {Vibrio vulnificus [TaxId: 672]}
Probab=5.67 E-value=49 Score=27.33 Aligned_cols=9 Identities=44% Similarity=0.560 Sum_probs=7.4
Q ss_pred eeehhhhhh
Q 046768 282 FRLENEHLS 290 (314)
Q Consensus 282 fRvEnEhi~ 290 (314)
=|+|+|||-
T Consensus 56 ~riewEHvv 64 (210)
T d1ouoa_ 56 SRIEWEHVV 64 (210)
T ss_dssp TSEEEEESS
T ss_pred hcccceeee
Confidence 478999986
No 5
>d3pvia_ c.52.1.6 (A:) Restriction endonuclease PvuII {Proteus vulgaris [TaxId: 585]}
Probab=4.87 E-value=2.8e+02 Score=21.18 Aligned_cols=31 Identities=13% Similarity=0.039 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhcC-----CCccchhhHHHHHHHH
Q 046768 114 KSRLLQCLRLLFEEK-----YPMQGYNGLKYFLTIV 144 (314)
Q Consensus 114 ~iR~~QCLrry~dt~-----~~~hL~Na~KY~sa~~ 144 (314)
+.|+.-|+|+|.+-. +-.---|++||+--++
T Consensus 8 ~~~l~p~i~eyq~la~k~~INDiFQdNGGKlLQvlm 43 (156)
T d3pvia_ 8 LLELWPHIQEYQDLALKHGINDIFQGNGGKLLQVLL 43 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCTTSTTHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHcCchhhhhcCChhhhHHHH
Confidence 568888999998642 2234569999986553
No 6
>d2o8ra2 d.322.1.2 (A:113-317) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]}
Probab=4.78 E-value=72 Score=25.79 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=26.0
Q ss_pred HHHHHhhhceeeeeehhhhhhccCCceecccccCCCCCCCCc
Q 046768 270 SLEIIRRSIWNFFRLENEHLSNVGKYRAFKSVPLPFNDDEDE 311 (314)
Q Consensus 270 ~lEI~RR~iWnffRvEnEhi~N~~~~ra~~~iplp~~~~~d~ 311 (314)
+=+|+|.++=.+|. ...+.+++.||.+|+-.+-.++++++
T Consensus 95 lediI~~~l~~LFp--g~~v~~~~~fRvTRdadl~~dee~~~ 134 (205)
T d2o8ra2 95 LEDIIKEHLDVVFP--GYEVMDSYSIKVSRDADLLLDAQRPE 134 (205)
T ss_dssp HHHHHHTTHHHHCT--TSEEEEEEEEEEECSSSCCCCC----
T ss_pred HHHHHHHHHHHhcC--CcEEEEeEEEEEEecccccccchhhc
Confidence 34566666655665 44588999999999998866554444
No 7
>d1tqga_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Thermotoga maritima [TaxId: 2336]}
Probab=3.68 E-value=2.1e+02 Score=19.51 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=15.9
Q ss_pred HHHHHHhHHHHHHHHHHHH
Q 046768 10 KYDEVSKLMERVETTFIKH 28 (314)
Q Consensus 10 ~~~~~~~l~~~~~~l~i~~ 28 (314)
.++.++.++|+.|+++-..
T Consensus 56 gl~~i~~lah~lE~~l~~~ 74 (105)
T d1tqga_ 56 GFSSMAKLCHTLENILDKA 74 (105)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 5778889999999987665
No 8
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.35 E-value=4.1e+02 Score=17.77 Aligned_cols=11 Identities=27% Similarity=0.745 Sum_probs=7.1
Q ss_pred hHHHHHHHHHH
Q 046768 3 AFSKIMKKYDE 13 (314)
Q Consensus 3 ~~~~~~~~~~~ 13 (314)
.|.+||+.|.+
T Consensus 30 ~FL~il~~f~~ 40 (85)
T d2f05a1 30 SFLEILHTYQK 40 (85)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 46677777754
No 9
>d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.32 E-value=3.8e+02 Score=18.18 Aligned_cols=11 Identities=36% Similarity=0.785 Sum_probs=7.6
Q ss_pred hHHHHHHHHHH
Q 046768 3 AFSKIMKKYDE 13 (314)
Q Consensus 3 ~~~~~~~~~~~ 13 (314)
.|.+||+.|.+
T Consensus 33 ~FL~il~~f~~ 43 (89)
T d1s5qb_ 33 AFLEILHTYQK 43 (89)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 57777777754
No 10
>d3bqoa1 a.146.1.1 (A:62-265) TRF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.12 E-value=2.8e+02 Score=22.55 Aligned_cols=15 Identities=20% Similarity=0.051 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCC
Q 046768 115 SRLLQCLRLLFEEKY 129 (314)
Q Consensus 115 iR~~QCLrry~dt~~ 129 (314)
+|++|||.|--+.++
T Consensus 62 i~i~QfLsRI~eG~~ 76 (204)
T d3bqoa1 62 IYICQFLTRIAAGKT 76 (204)
T ss_dssp HHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCCC
Done!