Query 046770
Match_columns 475
No_of_seqs 345 out of 2599
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 04:19:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046770.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046770hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2E-57 4.3E-62 485.0 34.9 407 40-474 18-434 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 2.2E-44 4.8E-49 347.2 12.2 267 200-475 1-274 (287)
3 PLN03210 Resistant to P. syrin 100.0 2.9E-33 6.2E-38 314.1 25.2 257 193-469 182-455 (1153)
4 PRK00411 cdc6 cell division co 99.5 9.5E-12 2.1E-16 125.4 23.1 254 193-460 28-306 (394)
5 PRK04841 transcriptional regul 99.5 4.3E-12 9.3E-17 141.7 22.6 239 195-463 14-278 (903)
6 TIGR03015 pepcterm_ATPase puta 99.4 4.6E-11 9.9E-16 113.9 21.9 182 224-410 43-242 (269)
7 PF01637 Arch_ATPase: Archaeal 99.4 1.8E-12 4E-17 120.6 10.1 195 197-405 1-233 (234)
8 TIGR02928 orc1/cdc6 family rep 99.4 2.5E-10 5.5E-15 113.9 24.7 252 195-460 15-298 (365)
9 PF05729 NACHT: NACHT domain 99.1 2.9E-10 6.3E-15 99.8 10.6 143 225-373 1-163 (166)
10 TIGR00635 ruvB Holliday juncti 99.1 5.6E-10 1.2E-14 108.5 12.0 235 195-465 4-254 (305)
11 COG2909 MalT ATP-dependent tra 99.1 8.7E-09 1.9E-13 107.1 19.3 243 194-464 18-285 (894)
12 COG2256 MGS1 ATPase related to 99.0 2.2E-09 4.8E-14 102.7 12.2 174 194-404 29-210 (436)
13 PRK13342 recombination factor 99.0 9.8E-09 2.1E-13 103.7 17.7 180 196-410 13-200 (413)
14 PRK00080 ruvB Holliday junctio 99.0 4.1E-10 8.9E-15 110.3 7.5 242 195-465 25-275 (328)
15 PTZ00112 origin recognition co 99.0 5.2E-08 1.1E-12 102.2 20.3 214 194-411 754-987 (1164)
16 PRK06893 DNA replication initi 98.9 1.6E-08 3.6E-13 93.6 11.6 155 225-410 40-207 (229)
17 COG3899 Predicted ATPase [Gene 98.9 1.7E-08 3.6E-13 110.0 13.2 261 196-468 1-326 (849)
18 PF13401 AAA_22: AAA domain; P 98.9 5.7E-09 1.2E-13 87.8 7.0 117 224-342 4-125 (131)
19 TIGR03420 DnaA_homol_Hda DnaA 98.8 3.9E-08 8.4E-13 91.1 11.7 171 201-410 23-205 (226)
20 PTZ00202 tuzin; Provisional 98.8 8.7E-07 1.9E-11 86.8 21.1 168 190-373 257-434 (550)
21 PRK05564 DNA polymerase III su 98.8 2.4E-07 5.2E-12 90.2 17.1 177 196-404 5-188 (313)
22 PRK12402 replication factor C 98.8 1.2E-07 2.6E-12 93.5 15.3 202 195-409 15-229 (337)
23 PRK14961 DNA polymerase III su 98.8 3.5E-07 7.6E-12 90.8 17.3 194 195-407 16-221 (363)
24 PRK07003 DNA polymerase III su 98.8 1.9E-07 4.1E-12 97.6 15.6 194 195-406 16-221 (830)
25 PRK14949 DNA polymerase III su 98.8 2.2E-07 4.8E-12 98.9 16.2 183 195-407 16-221 (944)
26 PF05496 RuvB_N: Holliday junc 98.7 7.9E-08 1.7E-12 86.2 10.6 183 195-412 24-227 (233)
27 COG1474 CDC6 Cdc6-related prot 98.7 7.6E-07 1.7E-11 87.7 18.5 206 196-405 18-237 (366)
28 PRK00440 rfc replication facto 98.7 3.9E-07 8.6E-12 89.1 16.6 184 195-407 17-204 (319)
29 PRK14963 DNA polymerase III su 98.7 2.5E-08 5.4E-13 102.3 8.3 195 195-404 14-215 (504)
30 PLN03025 replication factor C 98.7 2.3E-07 5.1E-12 90.5 14.8 187 195-408 13-202 (319)
31 cd00009 AAA The AAA+ (ATPases 98.7 1E-07 2.3E-12 81.3 10.7 124 198-343 1-130 (151)
32 PRK12323 DNA polymerase III su 98.7 2.9E-07 6.2E-12 94.9 15.2 197 195-406 16-225 (700)
33 PF13191 AAA_16: AAA ATPase do 98.7 2E-08 4.3E-13 89.9 5.8 51 196-251 1-51 (185)
34 PF13173 AAA_14: AAA domain 98.7 4.3E-08 9.3E-13 82.2 7.5 119 225-365 3-127 (128)
35 KOG2028 ATPase related to the 98.7 3E-07 6.5E-12 86.8 13.2 158 222-401 160-331 (554)
36 PRK14960 DNA polymerase III su 98.7 6.2E-07 1.4E-11 92.7 16.2 194 195-406 15-219 (702)
37 COG3903 Predicted ATPase [Gene 98.6 3E-08 6.4E-13 95.7 5.2 236 223-469 13-258 (414)
38 PRK14956 DNA polymerase III su 98.6 1.4E-07 3.1E-12 94.6 10.1 198 195-407 18-223 (484)
39 PRK14957 DNA polymerase III su 98.6 1E-06 2.3E-11 90.7 16.3 183 195-406 16-221 (546)
40 TIGR02903 spore_lon_C ATP-depe 98.6 1.1E-06 2.3E-11 92.9 16.3 202 196-409 155-398 (615)
41 PRK13341 recombination factor 98.6 4.5E-07 9.7E-12 96.7 13.4 175 195-404 28-215 (725)
42 PRK06645 DNA polymerase III su 98.6 2.3E-06 5E-11 87.6 17.7 198 195-407 21-230 (507)
43 PRK08727 hypothetical protein; 98.6 1.3E-06 2.8E-11 81.2 14.5 153 225-408 42-206 (233)
44 PRK14964 DNA polymerase III su 98.6 1.6E-06 3.4E-11 88.1 16.2 184 195-407 13-218 (491)
45 PRK08691 DNA polymerase III su 98.6 9.3E-07 2E-11 92.2 14.8 195 195-407 16-221 (709)
46 TIGR02397 dnaX_nterm DNA polym 98.6 2.5E-06 5.4E-11 84.8 17.4 186 195-409 14-221 (355)
47 PRK09112 DNA polymerase III su 98.6 1.1E-06 2.4E-11 86.2 14.3 198 193-407 21-241 (351)
48 TIGR00678 holB DNA polymerase 98.6 2.6E-06 5.7E-11 76.5 15.7 91 302-402 95-187 (188)
49 PRK07994 DNA polymerase III su 98.6 1.1E-06 2.5E-11 91.8 15.1 194 195-407 16-221 (647)
50 PRK14951 DNA polymerase III su 98.6 2.1E-06 4.6E-11 89.7 16.7 197 195-406 16-225 (618)
51 PRK07471 DNA polymerase III su 98.6 2.5E-06 5.3E-11 84.2 16.3 198 194-407 18-239 (365)
52 PRK04195 replication factor C 98.6 1.6E-06 3.4E-11 89.6 15.4 187 195-411 14-207 (482)
53 PRK07940 DNA polymerase III su 98.5 3.6E-06 7.8E-11 83.8 17.1 191 196-405 6-212 (394)
54 PRK09087 hypothetical protein; 98.5 3.1E-06 6.6E-11 78.1 15.3 145 224-410 44-199 (226)
55 PRK14962 DNA polymerase III su 98.5 2.8E-06 6.1E-11 86.6 15.9 209 195-423 14-239 (472)
56 PRK14958 DNA polymerase III su 98.5 2.2E-06 4.9E-11 88.2 15.3 185 195-407 16-221 (509)
57 cd01128 rho_factor Transcripti 98.5 2E-07 4.4E-12 86.8 6.6 88 225-313 17-113 (249)
58 PRK14955 DNA polymerase III su 98.5 1.5E-06 3.2E-11 87.4 13.2 200 195-407 16-229 (397)
59 PRK07764 DNA polymerase III su 98.5 4.2E-06 9.1E-11 90.5 16.3 193 195-406 15-221 (824)
60 PRK08903 DnaA regulatory inact 98.5 2.5E-06 5.4E-11 79.1 12.6 153 224-411 42-204 (227)
61 PRK05896 DNA polymerase III su 98.5 4.6E-06 9.9E-11 86.2 15.6 194 195-406 16-220 (605)
62 PRK08084 DNA replication initi 98.5 3.6E-06 7.8E-11 78.3 13.6 155 225-410 46-213 (235)
63 PRK14969 DNA polymerase III su 98.4 3.8E-06 8.3E-11 87.1 14.6 179 195-405 16-219 (527)
64 PRK09111 DNA polymerase III su 98.4 6.6E-06 1.4E-10 86.1 16.2 198 195-408 24-235 (598)
65 PF05621 TniB: Bacterial TniB 98.4 1E-05 2.2E-10 76.1 15.7 201 202-408 44-263 (302)
66 PRK09376 rho transcription ter 98.4 5.7E-07 1.2E-11 87.5 7.4 101 205-313 157-266 (416)
67 KOG2227 Pre-initiation complex 98.4 1E-05 2.2E-10 79.3 15.8 212 193-411 148-373 (529)
68 PRK14970 DNA polymerase III su 98.4 9.2E-06 2E-10 81.1 16.3 184 195-406 17-209 (367)
69 PRK14952 DNA polymerase III su 98.4 1.1E-05 2.4E-10 84.0 17.1 193 195-406 13-220 (584)
70 PRK14950 DNA polymerase III su 98.4 3.7E-06 8E-11 88.6 13.2 197 195-409 16-224 (585)
71 PRK14959 DNA polymerase III su 98.4 1.4E-05 3.1E-10 83.1 16.4 197 195-410 16-225 (624)
72 PRK05642 DNA replication initi 98.3 9.8E-06 2.1E-10 75.3 13.6 155 225-410 46-212 (234)
73 PRK14954 DNA polymerase III su 98.3 1.5E-05 3.3E-10 83.5 16.2 198 195-404 16-226 (620)
74 TIGR03345 VI_ClpV1 type VI sec 98.3 5.1E-06 1.1E-10 90.9 12.3 155 195-372 187-362 (852)
75 TIGR02639 ClpA ATP-dependent C 98.3 6.7E-06 1.5E-10 89.1 12.7 156 195-373 182-358 (731)
76 PRK14087 dnaA chromosomal repl 98.3 1.3E-05 2.8E-10 81.6 13.8 185 225-425 142-347 (450)
77 PF00308 Bac_DnaA: Bacterial d 98.3 1.7E-05 3.6E-10 72.9 13.1 190 196-410 10-212 (219)
78 PRK14953 DNA polymerase III su 98.3 5.7E-05 1.2E-09 77.5 18.3 196 195-408 16-222 (486)
79 TIGR01242 26Sp45 26S proteasom 98.3 1.4E-05 3.1E-10 79.5 13.6 182 194-400 121-328 (364)
80 KOG0989 Replication factor C, 98.2 1.3E-05 2.8E-10 74.5 11.7 194 195-411 36-235 (346)
81 KOG0991 Replication factor C, 98.2 1.3E-05 2.8E-10 71.6 11.1 102 195-325 27-135 (333)
82 TIGR00767 rho transcription te 98.2 5.1E-06 1.1E-10 81.4 9.2 89 225-314 169-266 (415)
83 CHL00095 clpC Clp protease ATP 98.2 7.9E-06 1.7E-10 89.6 11.6 156 195-371 179-352 (821)
84 PF14516 AAA_35: AAA-like doma 98.2 0.00015 3.3E-09 71.0 19.4 199 196-413 12-246 (331)
85 PRK14948 DNA polymerase III su 98.2 5.2E-05 1.1E-09 80.0 17.1 198 195-408 16-224 (620)
86 PRK08451 DNA polymerase III su 98.2 5.4E-05 1.2E-09 77.8 16.7 195 195-407 14-219 (535)
87 PRK07133 DNA polymerase III su 98.2 5.7E-05 1.2E-09 79.8 17.2 190 195-406 18-219 (725)
88 TIGR02881 spore_V_K stage V sp 98.2 3.8E-05 8.2E-10 72.8 14.4 137 222-374 40-192 (261)
89 CHL00181 cbbX CbbX; Provisiona 98.2 8.6E-05 1.9E-09 71.0 16.9 135 225-375 60-211 (287)
90 KOG2543 Origin recognition com 98.2 9.1E-05 2E-09 71.0 16.5 203 194-409 5-229 (438)
91 PRK06620 hypothetical protein; 98.2 5.1E-05 1.1E-09 69.4 14.5 142 225-410 45-193 (214)
92 PRK06305 DNA polymerase III su 98.2 5.8E-05 1.3E-09 76.9 16.4 180 195-404 17-220 (451)
93 PHA02544 44 clamp loader, smal 98.2 2.4E-05 5.1E-10 76.4 12.8 147 195-370 21-170 (316)
94 PRK14971 DNA polymerase III su 98.2 6.6E-05 1.4E-09 79.2 16.7 183 195-406 17-222 (614)
95 PRK14965 DNA polymerase III su 98.1 6.9E-05 1.5E-09 78.8 15.8 193 195-406 16-221 (576)
96 PRK11331 5-methylcytosine-spec 98.1 1.7E-05 3.7E-10 79.0 10.3 109 195-317 175-286 (459)
97 PRK06647 DNA polymerase III su 98.1 0.00017 3.7E-09 75.3 18.2 195 195-407 16-221 (563)
98 PF05673 DUF815: Protein of un 98.1 8E-05 1.7E-09 68.0 13.6 109 191-328 23-132 (249)
99 TIGR03346 chaperone_ClpB ATP-d 98.1 3.3E-05 7.2E-10 85.1 13.4 157 195-372 173-348 (852)
100 TIGR00362 DnaA chromosomal rep 98.1 0.00012 2.5E-09 74.2 16.2 183 224-426 136-337 (405)
101 PRK11034 clpA ATP-dependent Cl 98.1 2.2E-05 4.7E-10 84.5 11.0 155 196-372 187-361 (758)
102 PRK05563 DNA polymerase III su 98.1 0.00021 4.6E-09 74.8 17.9 194 195-407 16-221 (559)
103 TIGR02880 cbbX_cfxQ probable R 98.0 6.7E-05 1.4E-09 71.8 12.6 133 226-374 60-209 (284)
104 PRK03992 proteasome-activating 98.0 7.2E-05 1.6E-09 75.0 13.2 182 194-400 130-337 (389)
105 PRK10865 protein disaggregatio 98.0 6.5E-05 1.4E-09 82.6 13.9 156 195-372 178-353 (857)
106 PRK14086 dnaA chromosomal repl 98.0 0.0004 8.8E-09 72.1 18.6 181 225-425 315-514 (617)
107 PRK05707 DNA polymerase III su 98.0 0.00019 4E-09 70.0 15.0 97 302-406 105-203 (328)
108 PRK14088 dnaA chromosomal repl 98.0 0.00014 3E-09 74.0 14.5 182 224-425 130-331 (440)
109 COG3267 ExeA Type II secretory 97.9 0.00041 8.8E-09 63.3 14.9 179 224-409 51-248 (269)
110 COG2255 RuvB Holliday junction 97.9 6.3E-05 1.4E-09 69.4 9.8 183 195-412 26-229 (332)
111 PRK07399 DNA polymerase III su 97.9 0.00063 1.4E-08 65.9 17.2 197 196-408 5-223 (314)
112 PF00004 AAA: ATPase family as 97.9 1.4E-05 3.1E-10 66.9 5.0 22 227-248 1-22 (132)
113 PRK12422 chromosomal replicati 97.9 0.00023 5E-09 72.3 14.5 155 224-400 141-307 (445)
114 COG1373 Predicted ATPase (AAA+ 97.9 0.00022 4.7E-09 71.6 14.2 119 226-369 39-163 (398)
115 PRK00149 dnaA chromosomal repl 97.9 0.00014 3E-09 74.6 12.6 181 224-426 148-349 (450)
116 TIGR00763 lon ATP-dependent pr 97.9 0.00061 1.3E-08 74.5 17.7 165 195-373 320-505 (775)
117 PRK08116 hypothetical protein; 97.8 6.2E-05 1.3E-09 71.3 8.2 104 225-343 115-221 (268)
118 smart00382 AAA ATPases associa 97.8 0.00012 2.6E-09 61.5 9.3 88 225-316 3-91 (148)
119 PRK10787 DNA-binding ATP-depen 97.8 0.00039 8.5E-09 75.5 14.9 167 194-374 321-507 (784)
120 PF10443 RNA12: RNA12 protein; 97.8 0.001 2.2E-08 65.6 16.4 207 200-424 1-297 (431)
121 TIGR00602 rad24 checkpoint pro 97.8 0.00022 4.8E-09 75.0 12.3 210 194-410 83-327 (637)
122 COG0593 DnaA ATPase involved i 97.8 0.00044 9.5E-09 68.4 13.1 135 223-376 112-260 (408)
123 PRK06090 DNA polymerase III su 97.7 0.0037 8E-08 60.5 18.9 94 302-407 107-202 (319)
124 PRK08769 DNA polymerase III su 97.7 0.00048 1E-08 66.6 12.8 96 302-407 112-209 (319)
125 CHL00176 ftsH cell division pr 97.7 0.00068 1.5E-08 71.8 14.9 179 195-398 183-386 (638)
126 COG2812 DnaX DNA polymerase II 97.7 6E-05 1.3E-09 76.6 6.7 187 196-401 17-215 (515)
127 PRK10536 hypothetical protein; 97.7 0.0004 8.7E-09 64.3 11.5 132 195-343 55-213 (262)
128 TIGR01241 FtsH_fam ATP-depende 97.7 0.00096 2.1E-08 69.3 15.2 206 195-427 55-296 (495)
129 TIGR03689 pup_AAA proteasome A 97.7 0.00038 8.3E-09 71.3 11.8 170 195-374 182-379 (512)
130 TIGR02640 gas_vesic_GvpN gas v 97.7 0.0015 3.3E-08 61.8 15.1 111 226-343 23-161 (262)
131 PRK08058 DNA polymerase III su 97.7 0.0015 3.1E-08 64.1 15.4 162 196-372 6-181 (329)
132 PRK06871 DNA polymerase III su 97.6 0.0034 7.4E-08 60.9 16.9 94 302-404 106-201 (325)
133 PTZ00454 26S protease regulato 97.6 0.00035 7.6E-09 69.9 10.3 182 195-401 145-352 (398)
134 TIGR02639 ClpA ATP-dependent C 97.6 0.00092 2E-08 72.7 14.2 136 196-342 455-603 (731)
135 PTZ00361 26 proteosome regulat 97.6 0.00029 6.4E-09 71.0 9.4 182 195-401 183-390 (438)
136 COG0466 Lon ATP-dependent Lon 97.6 0.00071 1.5E-08 70.1 11.7 163 194-373 322-508 (782)
137 COG1222 RPT1 ATP-dependent 26S 97.5 0.0015 3.3E-08 62.4 12.6 188 196-411 152-372 (406)
138 PF13177 DNA_pol3_delta2: DNA 97.5 0.00086 1.9E-08 58.4 10.3 139 199-361 1-162 (162)
139 PRK04132 replication factor C 97.5 0.0022 4.8E-08 69.5 15.2 158 232-409 574-734 (846)
140 PRK12377 putative replication 97.5 0.00016 3.6E-09 67.3 5.6 101 225-342 102-205 (248)
141 PRK08118 topology modulation p 97.5 5.5E-05 1.2E-09 66.3 2.3 34 226-259 3-37 (167)
142 PRK10865 protein disaggregatio 97.5 0.0015 3.2E-08 72.0 13.7 140 195-342 568-720 (857)
143 PRK07993 DNA polymerase III su 97.5 0.0064 1.4E-07 59.5 16.5 94 302-404 107-202 (334)
144 PF07693 KAP_NTPase: KAP famil 97.5 0.0032 6.9E-08 61.6 14.6 74 201-279 2-80 (325)
145 KOG2035 Replication factor C, 97.4 0.00062 1.3E-08 62.7 8.4 207 197-427 15-259 (351)
146 PF04665 Pox_A32: Poxvirus A32 97.4 0.00024 5.1E-09 65.4 5.7 35 226-262 15-49 (241)
147 PRK08181 transposase; Validate 97.4 0.00029 6.3E-09 66.5 6.3 100 226-343 108-209 (269)
148 KOG0744 AAA+-type ATPase [Post 97.4 0.0018 4E-08 60.9 11.2 80 224-313 177-260 (423)
149 PRK13531 regulatory ATPase Rav 97.4 0.00078 1.7E-08 68.0 9.5 152 196-372 21-193 (498)
150 TIGR02902 spore_lonB ATP-depen 97.4 0.00052 1.1E-08 71.6 8.4 44 196-247 66-109 (531)
151 TIGR03346 chaperone_ClpB ATP-d 97.4 0.0011 2.3E-08 73.3 11.4 140 195-342 565-717 (852)
152 TIGR03345 VI_ClpV1 type VI sec 97.4 0.00065 1.4E-08 74.6 9.3 138 195-342 566-718 (852)
153 PRK06921 hypothetical protein; 97.4 0.00088 1.9E-08 63.4 8.9 99 225-342 118-224 (266)
154 PRK08939 primosomal protein Dn 97.3 0.00093 2E-08 64.5 8.9 122 199-342 135-260 (306)
155 PF01695 IstB_IS21: IstB-like 97.3 0.00022 4.7E-09 63.2 4.0 101 225-343 48-150 (178)
156 PRK06526 transposase; Provisio 97.3 0.0003 6.5E-09 66.0 5.2 100 225-343 99-201 (254)
157 PRK06964 DNA polymerase III su 97.3 0.0019 4.1E-08 63.1 10.6 93 302-406 131-225 (342)
158 COG0470 HolB ATPase involved i 97.3 0.0017 3.7E-08 63.5 10.3 146 196-363 2-171 (325)
159 PF02562 PhoH: PhoH-like prote 97.3 0.00061 1.3E-08 61.3 6.2 131 199-343 4-156 (205)
160 PF07728 AAA_5: AAA domain (dy 97.2 9.5E-05 2.1E-09 62.7 0.9 86 227-325 2-87 (139)
161 PRK09183 transposase/IS protei 97.2 0.00093 2E-08 63.0 7.7 100 225-342 103-205 (259)
162 PRK12608 transcription termina 97.2 0.0016 3.5E-08 63.7 9.3 101 204-312 120-229 (380)
163 KOG2228 Origin recognition com 97.2 0.0055 1.2E-07 58.2 12.2 174 195-374 24-220 (408)
164 PRK07952 DNA replication prote 97.2 0.0011 2.3E-08 61.7 7.5 102 225-342 100-204 (244)
165 PRK04296 thymidine kinase; Pro 97.2 0.00061 1.3E-08 61.1 5.7 112 225-343 3-116 (190)
166 COG0542 clpA ATP-binding subun 97.2 0.0012 2.6E-08 70.2 8.4 125 195-330 491-620 (786)
167 COG2607 Predicted ATPase (AAA+ 97.2 0.0022 4.7E-08 58.0 8.7 122 192-342 57-182 (287)
168 smart00763 AAA_PrkA PrkA AAA d 97.2 0.00041 8.8E-09 67.5 4.3 52 195-248 51-102 (361)
169 TIGR02237 recomb_radB DNA repa 97.2 0.0013 2.7E-08 60.1 7.4 86 223-312 11-106 (209)
170 PRK07261 topology modulation p 97.2 0.0012 2.6E-08 58.2 6.9 22 226-247 2-23 (171)
171 PRK06835 DNA replication prote 97.1 0.00057 1.2E-08 66.5 5.1 102 225-342 184-288 (329)
172 COG1223 Predicted ATPase (AAA+ 97.1 0.0038 8.2E-08 57.1 9.8 178 195-399 121-318 (368)
173 PRK11889 flhF flagellar biosyn 97.1 0.0038 8.3E-08 61.4 10.5 90 223-315 240-332 (436)
174 TIGR01243 CDC48 AAA family ATP 97.1 0.007 1.5E-07 66.1 13.8 182 195-401 453-658 (733)
175 CHL00095 clpC Clp protease ATP 97.1 0.0027 5.8E-08 70.0 10.5 137 195-342 509-661 (821)
176 COG0542 clpA ATP-binding subun 97.1 0.0043 9.4E-08 66.1 11.5 156 195-371 170-344 (786)
177 PF00158 Sigma54_activat: Sigm 97.1 0.0013 2.8E-08 57.6 6.5 129 197-343 1-144 (168)
178 PF14532 Sigma54_activ_2: Sigm 97.1 0.00057 1.2E-08 57.9 3.8 108 198-343 1-110 (138)
179 PRK09361 radB DNA repair and r 97.0 0.0018 3.9E-08 59.8 7.3 85 224-312 23-116 (225)
180 cd01393 recA_like RecA is a b 97.0 0.0033 7.1E-08 58.1 9.0 89 224-313 19-124 (226)
181 PRK11034 clpA ATP-dependent Cl 97.0 0.0023 5E-08 69.1 9.0 136 196-342 459-607 (758)
182 KOG0741 AAA+-type ATPase [Post 97.0 0.02 4.4E-07 57.6 14.6 145 222-396 536-704 (744)
183 PF13207 AAA_17: AAA domain; P 97.0 0.00049 1.1E-08 56.7 3.0 22 226-247 1-22 (121)
184 cd01123 Rad51_DMC1_radA Rad51_ 97.0 0.0032 7E-08 58.5 8.7 89 224-313 19-125 (235)
185 COG1484 DnaC DNA replication p 97.0 0.0022 4.8E-08 60.2 7.5 80 225-321 106-185 (254)
186 TIGR01243 CDC48 AAA family ATP 97.0 0.0098 2.1E-07 64.9 13.3 181 195-400 178-381 (733)
187 TIGR03499 FlhF flagellar biosy 97.0 0.0067 1.5E-07 58.0 10.6 86 223-312 193-281 (282)
188 KOG0733 Nuclear AAA ATPase (VC 97.0 0.012 2.6E-07 60.1 12.5 155 224-400 545-718 (802)
189 KOG1514 Origin recognition com 96.9 0.043 9.3E-07 57.2 16.5 202 196-406 397-621 (767)
190 PRK05541 adenylylsulfate kinas 96.9 0.0014 3E-08 58.1 5.2 36 223-260 6-41 (176)
191 PRK08699 DNA polymerase III su 96.9 0.011 2.5E-07 57.5 12.0 71 302-372 112-184 (325)
192 cd01394 radB RadB. The archaea 96.9 0.0028 6.2E-08 58.2 7.4 85 224-312 19-112 (218)
193 KOG1969 DNA replication checkp 96.9 0.004 8.6E-08 64.8 8.7 77 222-316 324-400 (877)
194 PTZ00494 tuzin-like protein; P 96.9 0.095 2.1E-06 52.1 17.6 169 191-373 367-544 (664)
195 COG1875 NYN ribonuclease and A 96.8 0.0043 9.3E-08 59.5 8.0 134 197-343 226-388 (436)
196 KOG0731 AAA+-type ATPase conta 96.8 0.019 4.2E-07 60.9 13.5 182 196-404 312-522 (774)
197 PRK13695 putative NTPase; Prov 96.8 0.00083 1.8E-08 59.4 3.0 22 226-247 2-23 (174)
198 PRK06696 uridine kinase; Valid 96.8 0.0016 3.5E-08 60.1 4.8 43 200-247 3-45 (223)
199 cd00983 recA RecA is a bacter 96.8 0.0037 8.1E-08 60.4 7.4 83 223-312 54-142 (325)
200 CHL00195 ycf46 Ycf46; Provisio 96.8 0.019 4.1E-07 59.1 12.5 155 223-401 258-430 (489)
201 TIGR01817 nifA Nif-specific re 96.7 0.01 2.2E-07 62.4 10.9 135 194-343 195-341 (534)
202 cd03247 ABCC_cytochrome_bd The 96.7 0.011 2.3E-07 52.5 9.5 23 225-247 29-51 (178)
203 PF08423 Rad51: Rad51; InterP 96.7 0.0035 7.5E-08 59.0 6.3 87 225-312 39-142 (256)
204 PRK09354 recA recombinase A; P 96.7 0.0056 1.2E-07 59.7 7.8 84 223-313 59-148 (349)
205 PF03215 Rad17: Rad17 cell cyc 96.7 0.011 2.3E-07 61.2 10.2 59 196-261 20-78 (519)
206 cd01120 RecA-like_NTPases RecA 96.7 0.0092 2E-07 51.5 8.5 40 226-267 1-40 (165)
207 cd03214 ABC_Iron-Siderophores_ 96.7 0.018 3.8E-07 51.2 10.4 119 225-346 26-161 (180)
208 cd01133 F1-ATPase_beta F1 ATP 96.7 0.0056 1.2E-07 57.6 7.2 85 226-312 71-172 (274)
209 TIGR02974 phageshock_pspF psp 96.6 0.0097 2.1E-07 58.2 9.1 127 197-342 1-143 (329)
210 PRK12724 flagellar biosynthesi 96.6 0.0063 1.4E-07 60.6 7.7 24 224-247 223-246 (432)
211 PF00448 SRP54: SRP54-type pro 96.6 0.008 1.7E-07 54.1 7.8 88 225-314 2-94 (196)
212 PLN00020 ribulose bisphosphate 96.6 0.0031 6.6E-08 61.3 5.4 26 222-247 146-171 (413)
213 TIGR02012 tigrfam_recA protein 96.6 0.0068 1.5E-07 58.5 7.7 84 223-313 54-143 (321)
214 cd03223 ABCD_peroxisomal_ALDP 96.6 0.021 4.5E-07 50.0 10.2 116 225-347 28-152 (166)
215 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.6 0.018 3.9E-07 49.1 9.5 103 225-346 27-130 (144)
216 PF05659 RPW8: Arabidopsis bro 96.6 0.048 1E-06 46.4 11.7 81 16-100 4-85 (147)
217 PRK08233 hypothetical protein; 96.6 0.0085 1.8E-07 53.1 7.6 24 224-247 3-26 (182)
218 TIGR02238 recomb_DMC1 meiotic 96.6 0.0068 1.5E-07 58.7 7.3 88 224-312 96-200 (313)
219 cd02025 PanK Pantothenate kina 96.5 0.0092 2E-07 54.8 7.9 74 226-301 1-76 (220)
220 PLN03187 meiotic recombination 96.5 0.0069 1.5E-07 59.2 7.2 88 224-312 126-230 (344)
221 COG1419 FlhF Flagellar GTP-bin 96.5 0.018 3.8E-07 56.7 10.0 102 224-328 203-308 (407)
222 cd00561 CobA_CobO_BtuR ATP:cor 96.5 0.0092 2E-07 51.4 7.1 116 225-343 3-138 (159)
223 KOG0733 Nuclear AAA ATPase (VC 96.5 0.0097 2.1E-07 60.8 8.2 99 195-313 190-292 (802)
224 PRK15429 formate hydrogenlyase 96.5 0.011 2.4E-07 64.1 9.4 133 195-343 376-521 (686)
225 PRK11608 pspF phage shock prot 96.5 0.0077 1.7E-07 58.9 7.4 132 196-343 7-151 (326)
226 TIGR02239 recomb_RAD51 DNA rep 96.5 0.013 2.9E-07 56.8 9.0 89 223-312 95-200 (316)
227 PRK06067 flagellar accessory p 96.5 0.011 2.5E-07 54.8 8.2 86 223-313 24-130 (234)
228 PF00485 PRK: Phosphoribulokin 96.5 0.0089 1.9E-07 53.8 7.2 81 226-308 1-88 (194)
229 COG1121 ZnuC ABC-type Mn/Zn tr 96.5 0.016 3.5E-07 53.7 8.9 119 225-345 31-201 (254)
230 PRK04301 radA DNA repair and r 96.5 0.011 2.4E-07 57.6 8.4 88 224-312 102-207 (317)
231 PRK15455 PrkA family serine pr 96.5 0.0021 4.6E-08 65.9 3.3 49 196-246 77-125 (644)
232 cd01131 PilT Pilus retraction 96.4 0.0037 8.1E-08 56.5 4.5 111 225-347 2-113 (198)
233 cd01125 repA Hexameric Replica 96.4 0.02 4.3E-07 53.4 9.4 21 226-246 3-23 (239)
234 PRK05439 pantothenate kinase; 96.4 0.019 4.2E-07 55.2 9.4 80 222-304 84-166 (311)
235 KOG0730 AAA+-type ATPase [Post 96.4 0.031 6.7E-07 57.8 11.2 135 222-376 466-618 (693)
236 cd03228 ABCC_MRP_Like The MRP 96.4 0.029 6.4E-07 49.3 9.9 23 225-247 29-51 (171)
237 COG4608 AppF ABC-type oligopep 96.4 0.014 3.1E-07 54.2 8.0 123 225-350 40-177 (268)
238 KOG2004 Mitochondrial ATP-depe 96.4 0.066 1.4E-06 56.0 13.4 164 194-373 410-596 (906)
239 COG0572 Udk Uridine kinase [Nu 96.4 0.0063 1.4E-07 54.8 5.5 77 223-304 7-85 (218)
240 PRK00771 signal recognition pa 96.4 0.025 5.4E-07 57.2 10.4 26 223-248 94-119 (437)
241 PRK14722 flhF flagellar biosyn 96.4 0.013 2.8E-07 57.9 8.0 89 225-315 138-227 (374)
242 cd03238 ABC_UvrA The excision 96.4 0.014 3.1E-07 51.5 7.6 113 225-347 22-153 (176)
243 PF13604 AAA_30: AAA domain; P 96.4 0.018 3.9E-07 51.9 8.4 104 225-343 19-131 (196)
244 COG1136 SalX ABC-type antimicr 96.3 0.039 8.5E-07 50.3 10.5 57 294-350 151-210 (226)
245 PRK07667 uridine kinase; Provi 96.3 0.0052 1.1E-07 55.2 4.9 38 204-247 3-40 (193)
246 cd03216 ABC_Carb_Monos_I This 96.3 0.012 2.6E-07 51.3 6.8 115 225-346 27-145 (163)
247 cd03246 ABCC_Protease_Secretio 96.3 0.018 3.9E-07 50.7 7.9 23 225-247 29-51 (173)
248 PRK12723 flagellar biosynthesi 96.3 0.047 1E-06 54.4 11.4 90 223-315 173-266 (388)
249 TIGR02236 recomb_radA DNA repa 96.3 0.019 4E-07 55.9 8.5 55 224-279 95-153 (310)
250 COG0468 RecA RecA/RadA recombi 96.2 0.018 4E-07 54.3 8.1 89 222-313 58-151 (279)
251 PHA02244 ATPase-like protein 96.2 0.018 3.9E-07 56.3 8.2 22 226-247 121-142 (383)
252 KOG0735 AAA+-type ATPase [Post 96.2 0.0097 2.1E-07 61.8 6.5 71 225-313 432-504 (952)
253 cd03222 ABC_RNaseL_inhibitor T 96.2 0.028 6.1E-07 49.7 8.8 102 225-347 26-136 (177)
254 PF13238 AAA_18: AAA domain; P 96.2 0.0033 7.1E-08 52.1 2.7 21 227-247 1-21 (129)
255 PRK10733 hflB ATP-dependent me 96.2 0.043 9.2E-07 58.8 11.8 130 225-374 186-336 (644)
256 TIGR00554 panK_bact pantothena 96.2 0.023 5.1E-07 54.2 8.8 80 222-303 60-141 (290)
257 COG1618 Predicted nucleotide k 96.2 0.004 8.7E-08 52.8 3.1 24 225-248 6-29 (179)
258 cd01122 GP4d_helicase GP4d_hel 96.2 0.047 1E-06 51.9 11.0 52 225-279 31-82 (271)
259 COG0464 SpoVK ATPases of the A 96.2 0.1 2.2E-06 54.3 14.3 134 222-375 274-425 (494)
260 PRK06547 hypothetical protein; 96.2 0.0067 1.5E-07 53.3 4.7 26 222-247 13-38 (172)
261 TIGR03877 thermo_KaiC_1 KaiC d 96.2 0.023 5E-07 52.9 8.5 48 223-274 20-67 (237)
262 PRK05022 anaerobic nitric oxid 96.2 0.018 3.9E-07 60.1 8.4 134 194-343 186-332 (509)
263 PF00154 RecA: recA bacterial 96.1 0.017 3.7E-07 55.7 7.4 83 224-313 53-141 (322)
264 PRK06731 flhF flagellar biosyn 96.1 0.038 8.2E-07 52.2 9.6 89 225-315 76-166 (270)
265 cd03115 SRP The signal recogni 96.1 0.027 5.9E-07 49.5 8.3 22 226-247 2-23 (173)
266 PTZ00301 uridine kinase; Provi 96.1 0.0068 1.5E-07 55.1 4.4 23 224-246 3-25 (210)
267 KOG1051 Chaperone HSP104 and r 96.1 0.036 7.8E-07 60.1 10.4 121 196-327 563-684 (898)
268 PRK09270 nucleoside triphospha 96.1 0.027 5.8E-07 52.2 8.4 26 222-247 31-56 (229)
269 cd03281 ABC_MSH5_euk MutS5 hom 96.1 0.035 7.6E-07 50.7 9.1 23 224-246 29-51 (213)
270 KOG0734 AAA+-type ATPase conta 96.1 0.015 3.2E-07 58.6 6.8 55 196-250 305-363 (752)
271 PRK08533 flagellar accessory p 96.1 0.033 7.1E-07 51.6 8.9 48 224-275 24-71 (230)
272 cd03230 ABC_DR_subfamily_A Thi 96.1 0.036 7.8E-07 48.8 8.8 117 225-347 27-159 (173)
273 PF13671 AAA_33: AAA domain; P 96.1 0.0049 1.1E-07 52.3 3.2 21 226-246 1-21 (143)
274 PLN03186 DNA repair protein RA 96.1 0.027 5.9E-07 55.1 8.6 89 223-312 122-227 (342)
275 PRK05480 uridine/cytidine kina 96.1 0.0054 1.2E-07 55.9 3.5 26 222-247 4-29 (209)
276 PRK14974 cell division protein 96.1 0.045 9.8E-07 53.4 10.0 90 223-315 139-234 (336)
277 PF07724 AAA_2: AAA domain (Cd 96.1 0.0035 7.6E-08 55.1 2.1 40 224-264 3-42 (171)
278 TIGR00959 ffh signal recogniti 96.0 0.026 5.7E-07 56.9 8.6 24 223-246 98-121 (428)
279 PRK12726 flagellar biosynthesi 96.0 0.054 1.2E-06 53.3 10.3 90 223-314 205-296 (407)
280 PRK07132 DNA polymerase III su 96.0 0.54 1.2E-05 45.2 17.1 133 224-372 18-161 (299)
281 PRK10867 signal recognition pa 96.0 0.024 5.2E-07 57.2 8.0 24 223-246 99-122 (433)
282 PRK12727 flagellar biosynthesi 96.0 0.033 7.3E-07 57.0 9.0 88 224-314 350-439 (559)
283 KOG0739 AAA+-type ATPase [Post 96.0 0.13 2.7E-06 48.4 11.8 178 196-399 134-334 (439)
284 PF12775 AAA_7: P-loop contain 96.0 0.0052 1.1E-07 58.3 3.0 34 205-247 23-56 (272)
285 cd02019 NK Nucleoside/nucleoti 96.0 0.0054 1.2E-07 45.0 2.4 22 226-247 1-22 (69)
286 KOG0743 AAA+-type ATPase [Post 96.0 0.14 2.9E-06 51.0 12.7 154 225-413 236-416 (457)
287 TIGR00708 cobA cob(I)alamin ad 95.9 0.038 8.3E-07 48.2 8.0 116 225-343 6-140 (173)
288 PRK10463 hydrogenase nickel in 95.9 0.036 7.8E-07 52.6 8.5 87 222-314 102-195 (290)
289 COG2884 FtsE Predicted ATPase 95.9 0.088 1.9E-06 46.2 10.0 60 290-350 142-204 (223)
290 TIGR01069 mutS2 MutS2 family p 95.9 0.029 6.3E-07 61.1 8.9 110 302-424 401-518 (771)
291 TIGR02858 spore_III_AA stage I 95.9 0.048 1E-06 51.6 9.3 130 203-348 97-234 (270)
292 TIGR00235 udk uridine kinase. 95.9 0.0069 1.5E-07 55.2 3.5 25 223-247 5-29 (207)
293 KOG0728 26S proteasome regulat 95.9 0.23 5E-06 45.4 12.8 130 223-373 180-331 (404)
294 PF03308 ArgK: ArgK protein; 95.9 0.014 3E-07 53.9 5.2 59 203-267 14-72 (266)
295 PTZ00035 Rad51 protein; Provis 95.9 0.056 1.2E-06 53.0 9.8 89 223-312 117-222 (337)
296 PHA00729 NTP-binding motif con 95.9 0.011 2.5E-07 53.8 4.6 25 223-247 16-40 (226)
297 PF00006 ATP-synt_ab: ATP synt 95.9 0.026 5.5E-07 51.5 6.9 81 226-312 17-114 (215)
298 PRK06762 hypothetical protein; 95.9 0.007 1.5E-07 52.9 3.2 23 225-247 3-25 (166)
299 TIGR01360 aden_kin_iso1 adenyl 95.8 0.0075 1.6E-07 53.8 3.4 24 223-246 2-25 (188)
300 COG0563 Adk Adenylate kinase a 95.8 0.013 2.8E-07 51.8 4.7 22 226-247 2-23 (178)
301 cd03282 ABC_MSH4_euk MutS4 hom 95.8 0.013 2.9E-07 53.0 5.0 119 225-350 30-158 (204)
302 PRK05703 flhF flagellar biosyn 95.8 0.04 8.7E-07 55.8 8.9 87 225-314 222-310 (424)
303 PRK06002 fliI flagellum-specif 95.8 0.057 1.2E-06 54.5 9.6 85 225-312 166-263 (450)
304 COG4618 ArpD ABC-type protease 95.7 0.024 5.1E-07 57.0 6.6 22 225-246 363-384 (580)
305 PRK10820 DNA-binding transcrip 95.7 0.027 5.9E-07 58.8 7.5 132 196-343 205-349 (520)
306 COG1703 ArgK Putative periplas 95.7 0.014 3.1E-07 54.7 4.8 67 205-277 38-104 (323)
307 PRK00409 recombination and DNA 95.7 0.054 1.2E-06 59.2 10.0 178 223-424 326-523 (782)
308 PF08433 KTI12: Chromatin asso 95.7 0.016 3.5E-07 54.8 5.2 23 225-247 2-24 (270)
309 TIGR03878 thermo_KaiC_2 KaiC d 95.7 0.043 9.2E-07 51.8 8.1 41 223-265 35-75 (259)
310 cd02028 UMPK_like Uridine mono 95.7 0.02 4.4E-07 50.8 5.4 22 226-247 1-22 (179)
311 KOG0729 26S proteasome regulat 95.7 0.038 8.3E-07 50.8 7.1 69 223-312 210-279 (435)
312 PRK03839 putative kinase; Prov 95.6 0.0085 1.8E-07 53.2 2.9 22 226-247 2-23 (180)
313 COG0396 sufC Cysteine desulfur 95.6 0.11 2.3E-06 47.2 9.6 59 296-354 155-215 (251)
314 cd03217 ABC_FeS_Assembly ABC-t 95.6 0.048 1E-06 49.3 7.7 23 225-247 27-49 (200)
315 cd00267 ABC_ATPase ABC (ATP-bi 95.6 0.038 8.3E-07 47.7 6.7 116 225-348 26-145 (157)
316 cd03232 ABC_PDR_domain2 The pl 95.6 0.1 2.2E-06 46.8 9.6 22 225-246 34-55 (192)
317 PF07726 AAA_3: ATPase family 95.6 0.012 2.6E-07 48.4 3.2 27 227-255 2-28 (131)
318 PRK14723 flhF flagellar biosyn 95.5 0.11 2.5E-06 55.7 11.3 24 224-247 185-208 (767)
319 TIGR00390 hslU ATP-dependent p 95.5 0.03 6.6E-07 55.7 6.5 53 195-247 12-70 (441)
320 cd01121 Sms Sms (bacterial rad 95.5 0.068 1.5E-06 53.1 9.1 82 224-313 82-168 (372)
321 PF03193 DUF258: Protein of un 95.5 0.021 4.7E-07 49.2 4.8 36 202-248 24-59 (161)
322 PF12061 DUF3542: Protein of u 95.5 0.036 7.7E-07 52.0 6.5 53 48-100 319-372 (402)
323 TIGR03575 selen_PSTK_euk L-ser 95.5 0.038 8.2E-07 53.9 7.0 21 227-247 2-22 (340)
324 PF08298 AAA_PrkA: PrkA AAA do 95.5 0.016 3.6E-07 56.0 4.5 51 194-246 60-110 (358)
325 PRK09519 recA DNA recombinatio 95.5 0.04 8.6E-07 59.3 7.7 84 223-313 59-148 (790)
326 cd02023 UMPK Uridine monophosp 95.5 0.0086 1.9E-07 54.1 2.4 22 226-247 1-22 (198)
327 cd00544 CobU Adenosylcobinamid 95.5 0.045 9.7E-07 48.0 6.8 79 227-312 2-82 (169)
328 COG4088 Predicted nucleotide k 95.5 0.048 1E-06 48.4 6.8 23 225-247 2-24 (261)
329 PF00910 RNA_helicase: RNA hel 95.5 0.0077 1.7E-07 48.5 1.8 21 227-247 1-21 (107)
330 COG0467 RAD55 RecA-superfamily 95.5 0.028 6.1E-07 53.1 6.0 42 223-266 22-63 (260)
331 TIGR02322 phosphon_PhnN phosph 95.5 0.011 2.4E-07 52.3 3.0 23 225-247 2-24 (179)
332 TIGR02329 propionate_PrpR prop 95.5 0.042 9.2E-07 57.1 7.6 132 196-343 213-358 (526)
333 TIGR00064 ftsY signal recognit 95.5 0.064 1.4E-06 51.0 8.3 90 222-314 70-165 (272)
334 PRK15453 phosphoribulokinase; 95.5 0.076 1.6E-06 50.1 8.5 79 222-303 3-90 (290)
335 PTZ00088 adenylate kinase 1; P 95.4 0.014 3E-07 53.9 3.6 21 227-247 9-29 (229)
336 cd01135 V_A-ATPase_B V/A-type 95.4 0.06 1.3E-06 50.6 7.8 87 226-312 71-175 (276)
337 PRK08972 fliI flagellum-specif 95.4 0.062 1.3E-06 54.0 8.3 84 225-312 163-261 (444)
338 PF13481 AAA_25: AAA domain; P 95.4 0.085 1.8E-06 47.2 8.7 42 225-266 33-82 (193)
339 PRK04040 adenylate kinase; Pro 95.4 0.012 2.7E-07 52.5 3.1 23 225-247 3-25 (188)
340 COG1428 Deoxynucleoside kinase 95.4 0.011 2.3E-07 52.8 2.6 25 224-248 4-28 (216)
341 KOG0738 AAA+-type ATPase [Post 95.4 0.067 1.5E-06 52.0 8.1 26 223-248 244-269 (491)
342 PF06309 Torsin: Torsin; Inte 95.4 0.024 5.1E-07 46.5 4.4 26 222-247 51-76 (127)
343 TIGR01359 UMP_CMP_kin_fam UMP- 95.4 0.01 2.2E-07 52.8 2.4 22 226-247 1-22 (183)
344 PRK04328 hypothetical protein; 95.4 0.051 1.1E-06 51.0 7.3 40 224-265 23-62 (249)
345 PRK15424 propionate catabolism 95.4 0.053 1.1E-06 56.4 8.0 47 195-247 219-265 (538)
346 cd03287 ABC_MSH3_euk MutS3 hom 95.4 0.12 2.6E-06 47.4 9.5 112 225-349 32-160 (222)
347 PRK12597 F0F1 ATP synthase sub 95.4 0.048 1E-06 55.4 7.4 87 225-312 144-246 (461)
348 COG0465 HflB ATP-dependent Zn 95.4 0.13 2.8E-06 53.6 10.6 182 194-402 149-357 (596)
349 PRK08149 ATP synthase SpaL; Va 95.3 0.065 1.4E-06 53.9 8.2 84 225-312 152-250 (428)
350 PF01583 APS_kinase: Adenylyls 95.3 0.023 5E-07 48.8 4.3 23 225-247 3-25 (156)
351 TIGR00382 clpX endopeptidase C 95.3 0.086 1.9E-06 52.9 9.0 53 194-246 76-138 (413)
352 PRK00131 aroK shikimate kinase 95.3 0.013 2.9E-07 51.4 3.0 24 224-247 4-27 (175)
353 COG1120 FepC ABC-type cobalami 95.3 0.094 2E-06 48.9 8.6 56 295-350 148-206 (258)
354 cd00227 CPT Chloramphenicol (C 95.3 0.013 2.8E-07 51.8 2.8 23 225-247 3-25 (175)
355 COG1066 Sms Predicted ATP-depe 95.3 0.047 1E-06 53.6 6.7 81 225-314 94-179 (456)
356 cd02021 GntK Gluconate kinase 95.3 0.012 2.6E-07 50.4 2.5 22 226-247 1-22 (150)
357 PF10236 DAP3: Mitochondrial r 95.3 0.21 4.5E-06 48.4 11.4 49 354-403 258-306 (309)
358 TIGR03263 guanyl_kin guanylate 95.3 0.014 3.1E-07 51.7 3.1 23 225-247 2-24 (180)
359 TIGR00150 HI0065_YjeE ATPase, 95.3 0.027 5.7E-07 47.0 4.4 24 225-248 23-46 (133)
360 PRK00625 shikimate kinase; Pro 95.3 0.013 2.8E-07 51.6 2.7 22 226-247 2-23 (173)
361 PF03969 AFG1_ATPase: AFG1-lik 95.3 0.028 6.1E-07 55.5 5.3 100 223-342 61-167 (362)
362 cd03369 ABCC_NFT1 Domain 2 of 95.3 0.25 5.4E-06 44.8 11.3 23 225-247 35-57 (207)
363 PRK14721 flhF flagellar biosyn 95.2 0.1 2.2E-06 52.4 9.2 23 224-246 191-213 (420)
364 PRK10751 molybdopterin-guanine 95.2 0.02 4.4E-07 50.1 3.7 26 222-247 4-29 (173)
365 cd02024 NRK1 Nicotinamide ribo 95.2 0.013 2.7E-07 52.3 2.4 22 226-247 1-22 (187)
366 PF13479 AAA_24: AAA domain 95.2 0.059 1.3E-06 49.3 6.9 20 225-244 4-23 (213)
367 PRK00889 adenylylsulfate kinas 95.2 0.019 4.1E-07 50.7 3.5 25 223-247 3-27 (175)
368 COG4240 Predicted kinase [Gene 95.2 0.069 1.5E-06 48.1 6.9 83 222-305 48-135 (300)
369 PF06745 KaiC: KaiC; InterPro 95.2 0.021 4.5E-07 52.8 3.9 85 224-312 19-124 (226)
370 PTZ00185 ATPase alpha subunit; 95.2 0.14 2.9E-06 52.3 9.8 87 226-312 191-298 (574)
371 PRK06995 flhF flagellar biosyn 95.2 0.16 3.6E-06 51.9 10.6 23 225-247 257-279 (484)
372 COG0194 Gmk Guanylate kinase [ 95.2 0.029 6.4E-07 49.0 4.5 24 225-248 5-28 (191)
373 KOG0736 Peroxisome assembly fa 95.2 0.071 1.5E-06 56.2 7.9 100 195-314 672-775 (953)
374 PRK09280 F0F1 ATP synthase sub 95.1 0.078 1.7E-06 53.7 8.1 87 225-312 145-247 (463)
375 COG4133 CcmA ABC-type transpor 95.1 0.22 4.9E-06 43.7 9.7 50 295-344 140-191 (209)
376 TIGR03522 GldA_ABC_ATP gliding 95.1 0.17 3.8E-06 48.9 10.4 23 225-247 29-51 (301)
377 PF00625 Guanylate_kin: Guanyl 95.1 0.024 5.1E-07 50.5 4.0 36 225-262 3-38 (183)
378 cd03280 ABC_MutS2 MutS2 homolo 95.1 0.055 1.2E-06 48.9 6.5 21 225-245 29-49 (200)
379 PRK11388 DNA-binding transcrip 95.1 0.055 1.2E-06 58.2 7.6 130 196-342 326-466 (638)
380 smart00534 MUTSac ATPase domai 95.1 0.16 3.4E-06 45.3 9.3 21 226-246 1-21 (185)
381 PRK06217 hypothetical protein; 95.1 0.015 3.3E-07 51.8 2.7 23 226-248 3-25 (183)
382 TIGR03881 KaiC_arch_4 KaiC dom 95.1 0.12 2.6E-06 47.7 8.8 40 224-265 20-59 (229)
383 TIGR01420 pilT_fam pilus retra 95.1 0.051 1.1E-06 53.6 6.6 111 225-346 123-233 (343)
384 COG2842 Uncharacterized ATPase 95.1 0.69 1.5E-05 43.7 13.4 96 225-328 95-190 (297)
385 COG1102 Cmk Cytidylate kinase 95.1 0.015 3.2E-07 49.5 2.2 22 226-247 2-23 (179)
386 PRK05986 cob(I)alamin adenolsy 95.0 0.066 1.4E-06 47.5 6.4 117 225-343 23-158 (191)
387 PF08477 Miro: Miro-like prote 95.0 0.02 4.3E-07 46.7 3.0 22 227-248 2-23 (119)
388 PRK08927 fliI flagellum-specif 95.0 0.11 2.3E-06 52.4 8.7 84 225-312 159-257 (442)
389 PF03266 NTPase_1: NTPase; In 95.0 0.017 3.7E-07 50.5 2.7 21 227-247 2-22 (168)
390 TIGR03498 FliI_clade3 flagella 95.0 0.089 1.9E-06 52.9 8.1 85 225-312 141-239 (418)
391 cd00984 DnaB_C DnaB helicase C 95.0 0.14 2.9E-06 47.8 9.0 50 225-277 14-63 (242)
392 PF03205 MobB: Molybdopterin g 95.0 0.02 4.3E-07 48.5 3.0 39 225-264 1-39 (140)
393 cd02020 CMPK Cytidine monophos 95.0 0.016 3.5E-07 49.3 2.4 22 226-247 1-22 (147)
394 PRK07594 type III secretion sy 95.0 0.11 2.4E-06 52.3 8.6 84 225-312 156-254 (433)
395 PRK10078 ribose 1,5-bisphospho 94.9 0.021 4.5E-07 51.0 3.1 23 225-247 3-25 (186)
396 KOG2170 ATPase of the AAA+ sup 94.9 0.074 1.6E-06 50.0 6.6 52 196-248 83-134 (344)
397 cd03213 ABCG_EPDR ABCG transpo 94.9 0.15 3.3E-06 45.8 8.7 23 225-247 36-58 (194)
398 PRK12678 transcription termina 94.9 0.041 8.8E-07 56.6 5.3 96 206-312 405-512 (672)
399 PF09848 DUF2075: Uncharacteri 94.9 0.092 2E-06 52.0 7.9 42 225-266 2-43 (352)
400 PRK00300 gmk guanylate kinase; 94.9 0.02 4.3E-07 51.9 2.9 23 225-247 6-28 (205)
401 cd01134 V_A-ATPase_A V/A-type 94.9 0.19 4E-06 48.9 9.5 59 206-275 146-205 (369)
402 PRK06936 type III secretion sy 94.9 0.12 2.7E-06 52.0 8.6 84 225-312 163-261 (439)
403 cd00071 GMPK Guanosine monopho 94.9 0.02 4.3E-07 48.4 2.6 21 227-247 2-22 (137)
404 PRK03846 adenylylsulfate kinas 94.8 0.026 5.7E-07 50.9 3.6 25 222-246 22-46 (198)
405 cd03285 ABC_MSH2_euk MutS2 hom 94.8 0.26 5.7E-06 45.3 10.2 175 223-412 29-219 (222)
406 COG1936 Predicted nucleotide k 94.8 0.022 4.8E-07 49.1 2.8 20 226-245 2-21 (180)
407 cd03243 ABC_MutS_homologs The 94.8 0.12 2.7E-06 46.6 7.9 22 225-246 30-51 (202)
408 PRK14737 gmk guanylate kinase; 94.8 0.03 6.5E-07 49.9 3.7 25 223-247 3-27 (186)
409 TIGR00764 lon_rel lon-related 94.8 0.07 1.5E-06 56.7 7.0 43 195-247 18-60 (608)
410 PRK13947 shikimate kinase; Pro 94.8 0.021 4.6E-07 50.1 2.7 22 226-247 3-24 (171)
411 PRK14530 adenylate kinase; Pro 94.8 0.022 4.8E-07 52.2 2.8 22 226-247 5-26 (215)
412 PRK10923 glnG nitrogen regulat 94.7 0.092 2E-06 54.3 7.8 46 196-247 139-184 (469)
413 PF13086 AAA_11: AAA domain; P 94.7 0.053 1.1E-06 49.9 5.4 52 226-277 19-75 (236)
414 COG1643 HrpA HrpA-like helicas 94.7 0.19 4.1E-06 54.8 10.1 144 201-356 52-221 (845)
415 COG2274 SunT ABC-type bacterio 94.7 0.19 4.2E-06 54.1 10.2 22 225-246 500-521 (709)
416 cd00820 PEPCK_HprK Phosphoenol 94.7 0.03 6.4E-07 44.7 3.0 21 225-245 16-36 (107)
417 TIGR02868 CydC thiol reductant 94.7 0.18 3.8E-06 53.1 9.8 23 225-247 362-384 (529)
418 cd02029 PRK_like Phosphoribulo 94.7 0.1 2.2E-06 48.9 7.0 77 226-304 1-85 (277)
419 COG1126 GlnQ ABC-type polar am 94.7 0.046 9.9E-07 49.0 4.5 22 225-246 29-50 (240)
420 cd01132 F1_ATPase_alpha F1 ATP 94.7 0.12 2.6E-06 48.7 7.4 83 226-312 71-170 (274)
421 PRK13949 shikimate kinase; Pro 94.7 0.024 5.2E-07 49.7 2.7 22 226-247 3-24 (169)
422 PRK14738 gmk guanylate kinase; 94.7 0.032 7E-07 50.7 3.7 26 222-247 11-36 (206)
423 PF13245 AAA_19: Part of AAA d 94.7 0.051 1.1E-06 40.6 4.1 22 225-246 11-33 (76)
424 TIGR01313 therm_gnt_kin carboh 94.6 0.021 4.4E-07 49.8 2.2 21 227-247 1-21 (163)
425 PRK11823 DNA repair protein Ra 94.6 0.13 2.9E-06 52.4 8.4 82 224-313 80-166 (446)
426 PRK09099 type III secretion sy 94.6 0.11 2.3E-06 52.7 7.5 85 225-312 164-262 (441)
427 COG0714 MoxR-like ATPases [Gen 94.6 0.064 1.4E-06 52.6 5.9 107 196-327 25-136 (329)
428 COG1124 DppF ABC-type dipeptid 94.6 0.028 6.1E-07 51.2 3.0 56 295-350 151-209 (252)
429 cd02027 APSK Adenosine 5'-phos 94.6 0.025 5.3E-07 48.5 2.6 22 226-247 1-22 (149)
430 PRK12339 2-phosphoglycerate ki 94.6 0.031 6.7E-07 50.3 3.3 24 224-247 3-26 (197)
431 PRK05917 DNA polymerase III su 94.6 0.49 1.1E-05 45.1 11.5 59 302-360 94-154 (290)
432 COG5635 Predicted NTPase (NACH 94.6 0.036 7.8E-07 61.3 4.5 140 223-366 221-371 (824)
433 PRK05201 hslU ATP-dependent pr 94.6 0.1 2.2E-06 52.0 7.1 53 195-247 15-73 (443)
434 cd00464 SK Shikimate kinase (S 94.6 0.026 5.6E-07 48.4 2.7 21 227-247 2-22 (154)
435 cd03284 ABC_MutS1 MutS1 homolo 94.6 0.12 2.7E-06 47.2 7.3 21 225-245 31-51 (216)
436 TIGR00073 hypB hydrogenase acc 94.6 0.037 8E-07 50.4 3.8 26 222-247 20-45 (207)
437 PRK15115 response regulator Gl 94.5 0.11 2.3E-06 53.3 7.6 133 196-343 135-279 (444)
438 cd01136 ATPase_flagellum-secre 94.5 0.21 4.6E-06 48.5 9.0 84 225-312 70-168 (326)
439 TIGR01818 ntrC nitrogen regula 94.5 0.22 4.8E-06 51.3 9.9 160 196-369 135-318 (463)
440 PRK05922 type III secretion sy 94.5 0.19 4E-06 50.7 8.8 84 225-312 158-256 (434)
441 COG2019 AdkA Archaeal adenylat 94.4 0.034 7.4E-07 47.6 3.0 24 224-247 4-27 (189)
442 TIGR01425 SRP54_euk signal rec 94.4 0.15 3.2E-06 51.3 8.1 24 223-246 99-122 (429)
443 CHL00081 chlI Mg-protoporyphyr 94.4 0.044 9.5E-07 53.7 4.2 46 194-247 16-61 (350)
444 TIGR03305 alt_F1F0_F1_bet alte 94.4 0.13 2.8E-06 52.0 7.5 87 225-312 139-241 (449)
445 PRK14527 adenylate kinase; Pro 94.4 0.034 7.3E-07 49.9 3.1 25 223-247 5-29 (191)
446 cd01124 KaiC KaiC is a circadi 94.4 0.041 8.9E-07 48.9 3.7 44 227-274 2-45 (187)
447 TIGR03496 FliI_clade1 flagella 94.4 0.18 3.8E-06 50.7 8.5 84 225-312 138-236 (411)
448 COG4586 ABC-type uncharacteriz 94.4 0.3 6.5E-06 45.5 9.1 75 296-370 167-245 (325)
449 cd01672 TMPK Thymidine monopho 94.4 0.084 1.8E-06 47.3 5.8 22 226-247 2-23 (200)
450 TIGR00416 sms DNA repair prote 94.4 0.2 4.4E-06 51.2 9.1 82 224-313 94-180 (454)
451 PRK13975 thymidylate kinase; P 94.4 0.034 7.3E-07 50.0 3.1 24 225-248 3-26 (196)
452 PRK05800 cobU adenosylcobinami 94.4 0.1 2.2E-06 45.7 6.0 80 226-312 3-85 (170)
453 PRK13765 ATP-dependent proteas 94.3 0.067 1.5E-06 56.7 5.6 74 195-280 31-104 (637)
454 PLN02796 D-glycerate 3-kinase 94.3 0.22 4.8E-06 48.5 8.6 25 223-247 99-123 (347)
455 CHL00206 ycf2 Ycf2; Provisiona 94.3 0.36 7.8E-06 56.5 11.4 25 224-248 1630-1654(2281)
456 KOG0652 26S proteasome regulat 94.3 1 2.3E-05 41.5 12.3 51 195-246 171-227 (424)
457 PRK05057 aroK shikimate kinase 94.3 0.035 7.5E-07 48.9 2.9 23 225-247 5-27 (172)
458 PRK06793 fliI flagellum-specif 94.3 0.18 3.9E-06 50.8 8.2 86 225-313 157-256 (432)
459 KOG0924 mRNA splicing factor A 94.3 0.29 6.3E-06 50.9 9.6 124 225-353 372-523 (1042)
460 KOG1532 GTPase XAB1, interacts 94.3 0.036 7.7E-07 51.2 2.9 27 222-248 17-43 (366)
461 KOG3347 Predicted nucleotide k 94.3 0.033 7.2E-07 46.6 2.5 22 225-246 8-29 (176)
462 PRK06761 hypothetical protein; 94.2 0.072 1.6E-06 50.5 5.1 24 225-248 4-27 (282)
463 COG1116 TauB ABC-type nitrate/ 94.2 0.039 8.4E-07 50.7 3.1 22 225-246 30-51 (248)
464 PF13521 AAA_28: AAA domain; P 94.2 0.032 7E-07 48.5 2.5 20 227-246 2-21 (163)
465 PLN02200 adenylate kinase fami 94.2 0.041 8.9E-07 51.0 3.3 24 223-246 42-65 (234)
466 COG3640 CooC CO dehydrogenase 94.2 0.068 1.5E-06 48.5 4.4 42 226-268 2-43 (255)
467 PRK13948 shikimate kinase; Pro 94.2 0.042 9.2E-07 48.7 3.2 25 223-247 9-33 (182)
468 PRK07721 fliI flagellum-specif 94.2 0.19 4.1E-06 51.0 8.2 85 225-312 159-257 (438)
469 PRK09825 idnK D-gluconate kina 94.2 0.039 8.4E-07 48.8 2.9 23 225-247 4-26 (176)
470 KOG1970 Checkpoint RAD17-RFC c 94.2 0.22 4.7E-06 50.7 8.4 46 201-247 88-133 (634)
471 PF00005 ABC_tran: ABC transpo 94.2 0.04 8.8E-07 46.2 2.9 23 225-247 12-34 (137)
472 TIGR00041 DTMP_kinase thymidyl 94.2 0.11 2.3E-06 46.6 5.9 24 225-248 4-27 (195)
473 PRK10875 recD exonuclease V su 94.1 0.25 5.5E-06 52.4 9.4 115 225-342 168-301 (615)
474 COG0529 CysC Adenylylsulfate k 94.1 0.05 1.1E-06 47.1 3.4 26 222-247 21-46 (197)
475 PRK13545 tagH teichoic acids e 94.1 0.44 9.5E-06 49.3 10.7 23 225-247 51-73 (549)
476 PRK13407 bchI magnesium chelat 94.1 0.054 1.2E-06 52.9 4.0 45 194-246 7-51 (334)
477 PRK04182 cytidylate kinase; Pr 94.1 0.041 8.9E-07 48.6 2.9 22 226-247 2-23 (180)
478 PLN02348 phosphoribulokinase 94.1 0.065 1.4E-06 52.9 4.5 26 222-247 47-72 (395)
479 TIGR02655 circ_KaiC circadian 94.0 0.069 1.5E-06 55.3 4.9 86 223-313 262-363 (484)
480 TIGR02173 cyt_kin_arch cytidyl 94.0 0.042 9.1E-07 48.1 2.9 22 226-247 2-23 (171)
481 KOG0726 26S proteasome regulat 94.0 0.25 5.4E-06 46.3 7.8 50 196-247 186-242 (440)
482 PRK07196 fliI flagellum-specif 94.0 0.16 3.6E-06 51.1 7.4 23 225-247 156-178 (434)
483 PRK05688 fliI flagellum-specif 94.0 0.21 4.5E-06 50.6 8.1 84 225-312 169-267 (451)
484 TIGR00176 mobB molybdopterin-g 94.0 0.037 8E-07 47.7 2.4 23 226-248 1-23 (155)
485 TIGR02030 BchI-ChlI magnesium 94.0 0.073 1.6E-06 52.1 4.7 44 195-246 4-47 (337)
486 PRK13946 shikimate kinase; Pro 94.0 0.042 9E-07 49.0 2.8 23 225-247 11-33 (184)
487 PRK14532 adenylate kinase; Pro 94.0 0.04 8.7E-07 49.2 2.7 21 227-247 3-23 (188)
488 PRK08356 hypothetical protein; 94.0 0.055 1.2E-06 48.7 3.6 21 225-245 6-26 (195)
489 TIGR03497 FliI_clade2 flagella 93.9 0.23 5E-06 50.0 8.2 84 225-312 138-236 (413)
490 TIGR01040 V-ATPase_V1_B V-type 93.9 0.18 4E-06 50.8 7.4 87 226-312 143-256 (466)
491 cd01428 ADK Adenylate kinase ( 93.9 0.041 8.9E-07 49.3 2.7 21 227-247 2-22 (194)
492 TIGR03375 type_I_sec_LssB type 93.9 0.44 9.6E-06 51.9 11.2 22 225-246 492-513 (694)
493 TIGR02546 III_secr_ATP type II 93.9 0.39 8.5E-06 48.6 9.9 84 225-312 146-244 (422)
494 PF13555 AAA_29: P-loop contai 93.9 0.066 1.4E-06 38.0 3.1 20 226-245 25-44 (62)
495 TIGR03574 selen_PSTK L-seryl-t 93.9 0.037 8E-07 51.9 2.4 22 226-247 1-22 (249)
496 TIGR02915 PEP_resp_reg putativ 93.8 0.15 3.3E-06 52.3 7.0 134 196-343 140-284 (445)
497 PRK13657 cyclic beta-1,2-gluca 93.8 0.24 5.2E-06 52.8 8.8 22 225-246 362-383 (588)
498 TIGR01041 ATP_syn_B_arch ATP s 93.8 0.16 3.4E-06 51.7 6.9 87 226-312 143-247 (458)
499 PRK07276 DNA polymerase III su 93.8 3.3 7.1E-05 39.6 15.4 70 301-371 102-173 (290)
500 COG4181 Predicted ABC-type tra 93.8 0.56 1.2E-05 40.6 9.0 83 267-350 122-214 (228)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2e-57 Score=484.99 Aligned_cols=407 Identities=30% Similarity=0.466 Sum_probs=330.9
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhcccccccCC
Q 046770 40 VLFARRERIHDYLVQWKKTLEKIKAVIEDAEEKQTREESVKMWLYELQNLAYDVEDLLGEFETEALRRKLLLEPAAADHH 119 (475)
Q Consensus 40 ~~~~~~~~v~~~~~~l~~~l~~~~~~l~~a~~~~~~~~~v~~Wl~~lrd~ayd~eD~lD~~~~~~~~~~~~~~~~~~~~~ 119 (475)
.++....+.++.+..|+++|..+++++.|+++++.....+..|.+.+++++|++||.++.|..+....+... ..
T Consensus 18 ~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~------~l 91 (889)
T KOG4658|consen 18 RESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKAND------LL 91 (889)
T ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH------Hh
Confidence 344455677789999999999999999999999888888999999999999999999999999876654332 10
Q ss_pred CCCCCcccccccccccCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhCCCcccccCCCCc--ccccCCCCCCCCcccccc
Q 046770 120 QPSTSKFPKFIRTWGTNLGLPSIKLDYKVVSKVEEVNARLQDIAMQIQPLDLREKYGGRS--KRFRQRRPTTSLVHEAKV 197 (475)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 197 (475)
. ......+.... ..+.++....+..+..++..+....+.++......... ........+.+...+..
T Consensus 92 ~-~~~~~~~~~c~---------~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~- 160 (889)
T KOG4658|consen 92 S-TRSVERQRLCL---------CGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD- 160 (889)
T ss_pred h-hhHHHHHHHhh---------hhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-
Confidence 0 00001111111 03456677777777777777777666666444221111 11111223334444445
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcc-cccCcCeEEEEEecCCCCHHHHHHHHH
Q 046770 198 YGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSR-VQCHFDLKAWTYVSQDFDIIRVTKSIL 276 (475)
Q Consensus 198 vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~~~F~~~~wv~v~~~~~~~~~l~~il 276 (475)
||.+..++++.+.|.. + +..+++|+||||+||||||++++|+.. ++.+|+.++||+||+.++...+..+|+
T Consensus 161 VG~e~~~~kl~~~L~~-d-------~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il 232 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLME-D-------DVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTIL 232 (889)
T ss_pred ccHHHHHHHHHHHhcc-C-------CCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHH
Confidence 9999999999999988 3 337999999999999999999999988 999999999999999999999999999
Q ss_pred HHhhcCCCCC--CChHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCChHHHHh-cCCCc
Q 046770 277 RSVAMGIVDH--NDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNADAALI-MGTVQ 353 (475)
Q Consensus 277 ~~l~~~~~~~--~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~-~~~~~ 353 (475)
..++...... ...+.+...|.+.|++|||||||||||+. .+|+.+..+++...+||+|++|||+..|+.. ++...
T Consensus 233 ~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~ 310 (889)
T KOG4658|consen 233 ERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDY 310 (889)
T ss_pred HHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCc
Confidence 9988754332 23468899999999999999999999987 4799999999998899999999999999998 77788
Q ss_pred eeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHhcCCCChhHHHHHHhccccccC--
Q 046770 354 AYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCLLHGKYDPSDWESVLNSRIWDLS-- 431 (475)
Q Consensus 354 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~~~~~~w~~~l~~~~~~~~-- 431 (475)
.+++..|+.++||+||.+.++.... ...+.+.++|++++++|+|+|||+.++|+.|+.+.+..+|..+.+...+...
T Consensus 311 ~~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~ 389 (889)
T KOG4658|consen 311 PIEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAAD 389 (889)
T ss_pred cccccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCC
Confidence 9999999999999999999987643 3334489999999999999999999999999999999999999987765522
Q ss_pred --CCccchHHHHHHhhhcCChhHHHHhhhhcccCCCcccCCcccc
Q 046770 432 --QGRCDIVHTLALSYHYLSRPLKKCFAYCSLFPKDYEFQEEETI 474 (475)
Q Consensus 432 --~~~~~i~~~l~~sy~~L~~~~k~cf~~~sifp~~~~i~~~~Li 474 (475)
+..+.++++|.+||++||+++|.||+|||+||+||+|+++.||
T Consensus 390 ~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li 434 (889)
T KOG4658|consen 390 FSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLI 434 (889)
T ss_pred CCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHH
Confidence 2346799999999999999999999999999999999999987
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.2e-44 Score=347.24 Aligned_cols=267 Identities=36% Similarity=0.566 Sum_probs=215.5
Q ss_pred cchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHh
Q 046770 200 RSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSV 279 (475)
Q Consensus 200 R~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l 279 (475)
|+.++++|.++|.... .+.++|+|+|+||+||||||..++++..++.+|+.++|++++...+...++..|+.++
T Consensus 1 re~~~~~l~~~L~~~~------~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l 74 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS------NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQL 74 (287)
T ss_dssp -HHHHHHHHHHHHTTT------TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhCCC------CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccc
Confidence 7899999999998722 4679999999999999999999999766899999999999999999999999999999
Q ss_pred hcCCC---CCCChHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCChHHHHhcCC-Ccee
Q 046770 280 AMGIV---DHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNADAALIMGT-VQAY 355 (475)
Q Consensus 280 ~~~~~---~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~-~~~~ 355 (475)
..... ...+.......+.+.|.++++||||||||+. ..|+.+...++....||+||||||+..++..+.. ...+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~ 152 (287)
T PF00931_consen 75 GEPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVI 152 (287)
T ss_dssp TCC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEE
T ss_pred cccccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccc
Confidence 88743 4567788999999999999999999999875 4888888888777779999999999988765544 6789
Q ss_pred eCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHhcCCCChhHHHHHHhccccccCC---
Q 046770 356 PLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCLLHGKYDPSDWESVLNSRIWDLSQ--- 432 (475)
Q Consensus 356 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~~~~~~w~~~l~~~~~~~~~--- 432 (475)
+|++|+.+++++||.+.++... ....+.+.+.+++|+++|+|+||||+++|++|+.+.+..+|..++++.......
T Consensus 153 ~l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~ 231 (287)
T PF00931_consen 153 ELEPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRD 231 (287)
T ss_dssp ECSS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSG
T ss_pred cccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999987654 123344567889999999999999999999997766778999988765544422
Q ss_pred CccchHHHHHHhhhcCChhHHHHhhhhcccCCCcccCCccccC
Q 046770 433 GRCDIVHTLALSYHYLSRPLKKCFAYCSLFPKDYEFQEEETIL 475 (475)
Q Consensus 433 ~~~~i~~~l~~sy~~L~~~~k~cf~~~sifp~~~~i~~~~Li~ 475 (475)
....+..++.+||+.||+++|+||+|||+||+++.|+++.||+
T Consensus 232 ~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~ 274 (287)
T PF00931_consen 232 YDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIR 274 (287)
T ss_dssp SCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHH
T ss_pred ccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHH
Confidence 3467999999999999999999999999999999999988763
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.9e-33 Score=314.14 Aligned_cols=257 Identities=21% Similarity=0.308 Sum_probs=204.7
Q ss_pred ccccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEe---cCC----
Q 046770 193 HEAKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYV---SQD---- 265 (475)
Q Consensus 193 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v---~~~---- 265 (475)
....+|||+..++++..+|.- .. .++++|+|+||||+||||||+.+|+ ++..+|+..+|+.. +..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l-~~-----~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~ 253 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHL-ES-----EEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIY 253 (1153)
T ss_pred ccccccchHHHHHHHHHHHcc-cc-----CceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhc
Confidence 345799999999999998854 21 5679999999999999999999999 56778988887642 111
Q ss_pred -------CC-HHHHHHHHHHHhhcCCCC-CCChHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEE
Q 046770 266 -------FD-IIRVTKSILRSVAMGIVD-HNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKI 336 (475)
Q Consensus 266 -------~~-~~~~l~~il~~l~~~~~~-~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 336 (475)
++ ...+...++.++...... ... ...+++.+.++|+||||||||+. ..|+.+.......+.||+|
T Consensus 254 ~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrI 327 (1153)
T PLN03210 254 SSANPDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRI 327 (1153)
T ss_pred ccccccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEE
Confidence 11 123444555554433211 111 14577888999999999999764 5788877665556789999
Q ss_pred EEecCChHHHHhcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCh
Q 046770 337 IITTRNADAALIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCLLHGKYDP 416 (475)
Q Consensus 337 lvTtR~~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~~~~ 416 (475)
|||||+..++..++...+|+++.|+.++||+||.++||.... .++.+.+++++|+++|+|+|||++++|+.|+.+ +.
T Consensus 328 IiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~ 404 (1153)
T PLN03210 328 IVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DK 404 (1153)
T ss_pred EEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CH
Confidence 999999999887777789999999999999999999997542 345688999999999999999999999999987 78
Q ss_pred hHHHHHHhccccccCCCccchHHHHHHhhhcCCh-hHHHHhhhhcccCCCcccC
Q 046770 417 SDWESVLNSRIWDLSQGRCDIVHTLALSYHYLSR-PLKKCFAYCSLFPKDYEFQ 469 (475)
Q Consensus 417 ~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~-~~k~cf~~~sifp~~~~i~ 469 (475)
.+|..+++++.... +..+..+|++||+.|++ ..|.||+++|+|+.++.++
T Consensus 405 ~~W~~~l~~L~~~~---~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~ 455 (1153)
T PLN03210 405 EDWMDMLPRLRNGL---DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN 455 (1153)
T ss_pred HHHHHHHHHHHhCc---cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH
Confidence 99999998765432 34699999999999987 5999999999999987664
No 4
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.47 E-value=9.5e-12 Score=125.43 Aligned_cols=254 Identities=14% Similarity=0.038 Sum_probs=152.5
Q ss_pred ccccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHH
Q 046770 193 HEAKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVT 272 (475)
Q Consensus 193 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l 272 (475)
.+..++||++++++|...|...-.+ .....+.|+|++|+|||++++.++++.......-..+++++....+...++
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~----~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~ 103 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRG----SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIF 103 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCC----CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHH
Confidence 3457999999999999998552111 233557899999999999999999854333222346777777777888999
Q ss_pred HHHHHHhhcCC-C-CCCChHHHHHHHHHHhC--CceEEEEEECCCCCC----hhhHhHhhCcCCCCC-CCcEEEEecCCh
Q 046770 273 KSILRSVAMGI-V-DHNDLNLLQWKLKKQLF--GKRFLLVLDDVWNEN----YNDWIDLSRPFQDGA-PGSKIIITTRNA 343 (475)
Q Consensus 273 ~~il~~l~~~~-~-~~~~~~~l~~~l~~~l~--~kr~LlVlDdv~~~~----~~~~~~l~~~l~~~~-~gs~ilvTtR~~ 343 (475)
..++.++.... + ...+...+...+.+.+. +++.+||||+++... .+.+..+...+.... .+..+|.++...
T Consensus 104 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~ 183 (394)
T PRK00411 104 SEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDL 183 (394)
T ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCc
Confidence 99999987622 1 23345666777777764 457899999996532 223333333322211 123356666554
Q ss_pred HHHHhcC-------CCceeeCCCCCHHHHHHHHhhcccCC--CCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHhc---
Q 046770 344 DAALIMG-------TVQAYPLKGLSNDDCMCLFTQHSLET--RDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCLLH--- 411 (475)
Q Consensus 344 ~v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~--~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~--- 411 (475)
.+..... ....+.+.+++.++..+++..++... .....+..++.+++......|..+.|+.++-....
T Consensus 184 ~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 184 TFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAE 263 (394)
T ss_pred chhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 3332211 22567899999999999999876322 11122223333333333334557777776643221
Q ss_pred -CC---CChhHHHHHHhccccccCCCccchHHHHHHhhhcCChhHHHHhhhhc
Q 046770 412 -GK---YDPSDWESVLNSRIWDLSQGRCDIVHTLALSYHYLSRPLKKCFAYCS 460 (475)
Q Consensus 412 -~~---~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s 460 (475)
.+ -+.+....+++.. -.....-.+..||.+.|..+..++
T Consensus 264 ~~~~~~I~~~~v~~a~~~~----------~~~~~~~~~~~L~~~~k~~L~ai~ 306 (394)
T PRK00411 264 REGSRKVTEEDVRKAYEKS----------EIVHLSEVLRTLPLHEKLLLRAIV 306 (394)
T ss_pred HcCCCCcCHHHHHHHHHHH----------HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 11 2445555555432 012234457788888776555433
No 5
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.47 E-value=4.3e-12 Score=141.67 Aligned_cols=239 Identities=15% Similarity=0.150 Sum_probs=150.7
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEec-CCCCHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVS-QDFDIIRVTK 273 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~-~~~~~~~~l~ 273 (475)
+.++-|.. |.+.|.. . ...+++.|+|++|.||||++.++... +..++|+++. .+.++..++.
T Consensus 14 ~~~~~R~r----l~~~l~~-~------~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~ 76 (903)
T PRK04841 14 HNTVVRER----LLAKLSG-A------NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFAS 76 (903)
T ss_pred cccCcchH----HHHHHhc-c------cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHH
Confidence 45666665 4444433 1 34689999999999999999998862 2268999996 4456677778
Q ss_pred HHHHHhhcCCCC-------------CCChHHHHHHHHHHh-C-CceEEEEEECCCCCChhhHhHhhCcCC-CCCCCcEEE
Q 046770 274 SILRSVAMGIVD-------------HNDLNLLQWKLKKQL-F-GKRFLLVLDDVWNENYNDWIDLSRPFQ-DGAPGSKII 337 (475)
Q Consensus 274 ~il~~l~~~~~~-------------~~~~~~l~~~l~~~l-~-~kr~LlVlDdv~~~~~~~~~~l~~~l~-~~~~gs~il 337 (475)
.++..+...... ..+...+...+-..+ . +.+++|||||++..+......++..+. ....+.++|
T Consensus 77 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv 156 (903)
T PRK04841 77 YLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLV 156 (903)
T ss_pred HHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEE
Confidence 888877532111 012222333333333 2 679999999997765334343443333 334567888
Q ss_pred EecCChH-H--HHhcCCCceeeCC----CCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHh
Q 046770 338 ITTRNAD-A--ALIMGTVQAYPLK----GLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCLL 410 (475)
Q Consensus 338 vTtR~~~-v--~~~~~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L 410 (475)
||||... . ...........+. +|+.+|+.+||........ ..+....|.+.|+|.|+++..++..+
T Consensus 157 ~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~-------~~~~~~~l~~~t~Gwp~~l~l~~~~~ 229 (903)
T PRK04841 157 VLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI-------EAAESSRLCDDVEGWATALQLIALSA 229 (903)
T ss_pred EEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC-------CHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 9999732 1 1111112334455 9999999999987653321 23556779999999999999999877
Q ss_pred cCCCChhHHHHHHhccccccCC-CccchHHHHHH-hhhcCChhHHHHhhhhcccC
Q 046770 411 HGKYDPSDWESVLNSRIWDLSQ-GRCDIVHTLAL-SYHYLSRPLKKCFAYCSLFP 463 (475)
Q Consensus 411 ~~~~~~~~w~~~l~~~~~~~~~-~~~~i~~~l~~-sy~~L~~~~k~cf~~~sifp 463 (475)
........ ... +.+.. +...+...|.- .|+.||++.+..+...|+++
T Consensus 230 ~~~~~~~~--~~~----~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~ 278 (903)
T PRK04841 230 RQNNSSLH--DSA----RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR 278 (903)
T ss_pred hhCCCchh--hhh----HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc
Confidence 65421100 011 11111 12235554433 48999999999999999997
No 6
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.41 E-value=4.6e-11 Score=113.94 Aligned_cols=182 Identities=18% Similarity=0.118 Sum_probs=116.9
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHH----
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQ---- 299 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~---- 299 (475)
..++.|+|++|+|||||++.+++..... .+ ...|+ +....+..+++..++..++..... .+...+...+...
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIEQ 118 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHHH
Confidence 3578999999999999999999864321 11 12233 334457778888888888665322 2223333333332
Q ss_pred -hCCceEEEEEECCCCCChhhHhHhhCcCC---CCCCCcEEEEecCChHHHHhcC----------CCceeeCCCCCHHHH
Q 046770 300 -LFGKRFLLVLDDVWNENYNDWIDLSRPFQ---DGAPGSKIIITTRNADAALIMG----------TVQAYPLKGLSNDDC 365 (475)
Q Consensus 300 -l~~kr~LlVlDdv~~~~~~~~~~l~~~l~---~~~~gs~ilvTtR~~~v~~~~~----------~~~~~~l~~L~~~~~ 365 (475)
..+++++||+||++..+...++.+..... .......|++|.... ....+. ....+.+.+|+.++.
T Consensus 119 ~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 26788999999998876666666542221 122233556666543 221111 134578999999999
Q ss_pred HHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHh
Q 046770 366 MCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCLL 410 (475)
Q Consensus 366 ~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L 410 (475)
.+++...+...+......-..+..+.|++.|+|.|..|..++..+
T Consensus 198 ~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999987764332111122345788899999999999999988876
No 7
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.38 E-value=1.8e-12 Score=120.58 Aligned_cols=195 Identities=19% Similarity=0.200 Sum_probs=100.0
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHH-
Q 046770 197 VYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSI- 275 (475)
Q Consensus 197 ~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~i- 275 (475)
|+||++|+++|.+++.. +..+.+.|+|+.|+|||+|++.+.+..+ ...+ ..+|+......... .+..+
T Consensus 1 F~gR~~el~~l~~~l~~--------~~~~~~~l~G~rg~GKTsLl~~~~~~~~-~~~~-~~~y~~~~~~~~~~-~~~~~~ 69 (234)
T PF01637_consen 1 FFGREKELEKLKELLES--------GPSQHILLYGPRGSGKTSLLKEFINELK-EKGY-KVVYIDFLEESNES-SLRSFI 69 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----------SSEEEEEESTTSSHHHHHHHHHHHCT---EE-CCCHHCCTTBSHHH-HHHHHH
T ss_pred CCCHHHHHHHHHHHHHh--------hcCcEEEEEcCCcCCHHHHHHHHHHHhh-hcCC-cEEEEecccchhhh-HHHHHH
Confidence 78999999999999876 3346899999999999999999998431 1111 33444443333221 12222
Q ss_pred ---------HHHhhcCCCC----------CCChHHHHHHHHHHh--CCceEEEEEECCCCCC------hhhHhHhhCcCC
Q 046770 276 ---------LRSVAMGIVD----------HNDLNLLQWKLKKQL--FGKRFLLVLDDVWNEN------YNDWIDLSRPFQ 328 (475)
Q Consensus 276 ---------l~~l~~~~~~----------~~~~~~l~~~l~~~l--~~kr~LlVlDdv~~~~------~~~~~~l~~~l~ 328 (475)
...+....+. ..........+-+.+ .+++++|||||+.... ..-...+...+.
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~ 149 (234)
T PF01637_consen 70 EETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLD 149 (234)
T ss_dssp HHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHh
Confidence 1112111110 111112222222222 2445999999995433 111122222222
Q ss_pred C--CCCCcEEEEecCChHHHHh--------cCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCC
Q 046770 329 D--GAPGSKIIITTRNADAALI--------MGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNG 398 (475)
Q Consensus 329 ~--~~~gs~ilvTtR~~~v~~~--------~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G 398 (475)
. ......+|+++........ .+....+.|++|+.+++++++....-.. . .. +...+..++|+..+||
T Consensus 150 ~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~-~~-~~~~~~~~~i~~~~gG 226 (234)
T PF01637_consen 150 SLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-I-KL-PFSDEDIEEIYSLTGG 226 (234)
T ss_dssp H----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT
T ss_pred hccccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-h-cc-cCCHHHHHHHHHHhCC
Confidence 1 2233445555555444432 1233459999999999999999865332 1 11 2234556889999999
Q ss_pred chHHHHH
Q 046770 399 LPLAAKA 405 (475)
Q Consensus 399 ~PLai~~ 405 (475)
+|..|..
T Consensus 227 ~P~~l~~ 233 (234)
T PF01637_consen 227 NPRYLQE 233 (234)
T ss_dssp -HHHHHH
T ss_pred CHHHHhc
Confidence 9998875
No 8
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.36 E-value=2.5e-10 Score=113.88 Aligned_cols=252 Identities=14% Similarity=0.068 Sum_probs=147.0
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccc-cCc---CeEEEEEecCCCCHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQ-CHF---DLKAWTYVSQDFDIIR 270 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~F---~~~~wv~v~~~~~~~~ 270 (475)
..++||+.++++|..+|...-.+ .....+.|+|++|+|||++++.++++.... ... -..+|+++....+...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~----~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~ 90 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRG----SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQ 90 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcC----CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHH
Confidence 47999999999999998652111 233568999999999999999999753211 111 1456788877778889
Q ss_pred HHHHHHHHhhc---CCC-CCCChHHHHHHHHHHh--CCceEEEEEECCCCCC---hhhHhHhhCcC--CC-CCCCcEEEE
Q 046770 271 VTKSILRSVAM---GIV-DHNDLNLLQWKLKKQL--FGKRFLLVLDDVWNEN---YNDWIDLSRPF--QD-GAPGSKIII 338 (475)
Q Consensus 271 ~l~~il~~l~~---~~~-~~~~~~~l~~~l~~~l--~~kr~LlVlDdv~~~~---~~~~~~l~~~l--~~-~~~gs~ilv 338 (475)
++..++.++.. ..+ ...+...+...+.+.+ .+++++||||+++... ......+.... .. ......+|+
T Consensus 91 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~ 170 (365)
T TIGR02928 91 VLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIG 170 (365)
T ss_pred HHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEE
Confidence 99999999852 211 1223445555555555 3568899999996541 11122332221 11 112334555
Q ss_pred ecCChHHHHhcC-------CCceeeCCCCCHHHHHHHHhhcccCC-CCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHh
Q 046770 339 TTRNADAALIMG-------TVQAYPLKGLSNDDCMCLFTQHSLET-RDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCLL 410 (475)
Q Consensus 339 TtR~~~v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L 410 (475)
+|+.......+. ....+.+.+++.++..+++..++... ......++..+....++..+.|.|-.+..+....
T Consensus 171 i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a 250 (365)
T TIGR02928 171 ISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVA 250 (365)
T ss_pred EECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 554433221111 12468899999999999999876321 1112233344455667777889886544332221
Q ss_pred -----cC---CCChhHHHHHHhccccccCCCccchHHHHHHhhhcCChhHHHHhhhhc
Q 046770 411 -----HG---KYDPSDWESVLNSRIWDLSQGRCDIVHTLALSYHYLSRPLKKCFAYCS 460 (475)
Q Consensus 411 -----~~---~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s 460 (475)
.. .-+.+....+.+.. -.....-++..||.+.+..+..+.
T Consensus 251 ~~~a~~~~~~~it~~~v~~a~~~~----------~~~~~~~~i~~l~~~~~~~l~ai~ 298 (365)
T TIGR02928 251 GEIAEREGAERVTEDHVEKAQEKI----------EKDRLLELIRGLPTHSKLVLLAIA 298 (365)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHH----------HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11 12344444444321 012334456788887776555443
No 9
>PF05729 NACHT: NACHT domain
Probab=99.14 E-value=2.9e-10 Score=99.80 Aligned_cols=143 Identities=22% Similarity=0.216 Sum_probs=87.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccC----cCeEEEEEecCCCCHH---HHHHHHHHHhhcCCCCCCChHHHHHHHH
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCH----FDLKAWTYVSQDFDII---RVTKSILRSVAMGIVDHNDLNLLQWKLK 297 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~v~~~~~~~---~~l~~il~~l~~~~~~~~~~~~l~~~l~ 297 (475)
+++.|+|.+|+||||+++.++........ +...+|.+........ .+...+..+..... ..... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHH---HHH
Confidence 47899999999999999999875433322 4456677666544332 23222322222111 11111 122
Q ss_pred HH-hCCceEEEEEECCCCCChh-------hHhHhhCcCCC--CCCCcEEEEecCChHH---HHhcCCCceeeCCCCCHHH
Q 046770 298 KQ-LFGKRFLLVLDDVWNENYN-------DWIDLSRPFQD--GAPGSKIIITTRNADA---ALIMGTVQAYPLKGLSNDD 364 (475)
Q Consensus 298 ~~-l~~kr~LlVlDdv~~~~~~-------~~~~l~~~l~~--~~~gs~ilvTtR~~~v---~~~~~~~~~~~l~~L~~~~ 364 (475)
.. ...++++||||++++.... .+..++..+.. ...++++|||+|.... .........+.+.+|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 22 2578999999999654321 13333333322 2468999999998665 3334455689999999999
Q ss_pred HHHHHhhcc
Q 046770 365 CMCLFTQHS 373 (475)
Q Consensus 365 ~~~lf~~~~ 373 (475)
..+++.+..
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999998654
No 10
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.11 E-value=5.6e-10 Score=108.46 Aligned_cols=235 Identities=16% Similarity=0.087 Sum_probs=123.2
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKS 274 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~ 274 (475)
.+|+|++..++.|..++.. ..... .....+.++|++|+|||+||+.+++... ..+ ..+..+..... ..+..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~-~~~~~--~~~~~~ll~Gp~G~GKT~la~~ia~~~~--~~~---~~~~~~~~~~~-~~l~~ 74 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEA-AKMRQ--EALDHLLLYGPPGLGKTTLAHIIANEMG--VNL---KITSGPALEKP-GDLAA 74 (305)
T ss_pred HHHcCHHHHHHHHHHHHHH-HHhcC--CCCCeEEEECCCCCCHHHHHHHHHHHhC--CCE---EEeccchhcCc-hhHHH
Confidence 3699999999999988864 11111 3345688999999999999999988432 222 11111111111 11222
Q ss_pred HHHHhhcCCC----CCCC-hHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCChHHHHhc
Q 046770 275 ILRSVAMGIV----DHND-LNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNADAALIM 349 (475)
Q Consensus 275 il~~l~~~~~----~~~~-~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~ 349 (475)
.+..+..... +... .......+...+.+.+..+|+++..... .+ ...+ .+.+-|..||+...+....
T Consensus 75 ~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~--~~---~~~~---~~~~li~~t~~~~~l~~~l 146 (305)
T TIGR00635 75 ILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSAR--SV---RLDL---PPFTLVGATTRAGMLTSPL 146 (305)
T ss_pred HHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCcccc--ce---eecC---CCeEEEEecCCccccCHHH
Confidence 2222221100 0000 0112223344444444444554432221 11 1111 1245566677754332211
Q ss_pred --CCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHhcC------C--CChhHH
Q 046770 350 --GTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCLLHG------K--YDPSDW 419 (475)
Q Consensus 350 --~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~------~--~~~~~w 419 (475)
.....+.+++++.++..+++.+.+..... . -..+....|++.|+|.|-.+..++..+.. . .+.+..
T Consensus 147 ~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~-~---~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v 222 (305)
T TIGR00635 147 RDRFGIILRLEFYTVEELAEIVSRSAGLLNV-E---IEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIA 222 (305)
T ss_pred HhhcceEEEeCCCCHHHHHHHHHHHHHHhCC-C---cCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHH
Confidence 12356789999999999999987753321 1 22456678999999999776655543310 0 111111
Q ss_pred HHHHhccccccCCCccchHHHHHHhhhcCChhHHHHhh-hhcccCCC
Q 046770 420 ESVLNSRIWDLSQGRCDIVHTLALSYHYLSRPLKKCFA-YCSLFPKD 465 (475)
Q Consensus 420 ~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~-~~sifp~~ 465 (475)
.. ....+...|..|+.+.+..|. .++.++.+
T Consensus 223 ~~---------------~l~~l~~~~~~l~~~~~~~L~al~~~~~~~ 254 (305)
T TIGR00635 223 LK---------------ALEMLMIDELGLDEIDRKLLSVLIEQFQGG 254 (305)
T ss_pred HH---------------HHHHhCCCCCCCCHHHHHHHHHHHHHhCCC
Confidence 11 222245567778887776655 55666543
No 11
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.08 E-value=8.7e-09 Score=107.10 Aligned_cols=243 Identities=14% Similarity=0.130 Sum_probs=154.4
Q ss_pred cccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCC-CCHHHHH
Q 046770 194 EAKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQD-FDIIRVT 272 (475)
Q Consensus 194 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~l 272 (475)
....+-|. +|++.|.. . .+.+.+.|..|.|.|||||+-+... +.. .-..+.|.++.+. .++..++
T Consensus 18 ~~~~v~R~----rL~~~L~~-~------~~~RL~li~APAGfGKttl~aq~~~--~~~-~~~~v~Wlslde~dndp~rF~ 83 (894)
T COG2909 18 PDNYVVRP----RLLDRLRR-A------NDYRLILISAPAGFGKTTLLAQWRE--LAA-DGAAVAWLSLDESDNDPARFL 83 (894)
T ss_pred cccccccH----HHHHHHhc-C------CCceEEEEeCCCCCcHHHHHHHHHH--hcC-cccceeEeecCCccCCHHHHH
Confidence 34455554 46666654 2 4679999999999999999999975 111 2246899998764 5788899
Q ss_pred HHHHHHhhcCCCC-------------CCChHHHHHHHHHHhC--CceEEEEEECCCCCChhhHhHhhCc-CCCCCCCcEE
Q 046770 273 KSILRSVAMGIVD-------------HNDLNLLQWKLKKQLF--GKRFLLVLDDVWNENYNDWIDLSRP-FQDGAPGSKI 336 (475)
Q Consensus 273 ~~il~~l~~~~~~-------------~~~~~~l~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~l~~~-l~~~~~gs~i 336 (475)
..++..++.-.++ ..+...+...+..-+. .++..+||||.+-........-+.. +.....+-.+
T Consensus 84 ~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~l 163 (894)
T COG2909 84 SYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTL 163 (894)
T ss_pred HHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEE
Confidence 9999888754332 2233334444444332 4689999999865432233322222 2344567899
Q ss_pred EEecCChHHHHhcC---CCceeeC----CCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHHH
Q 046770 337 IITTRNADAALIMG---TVQAYPL----KGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCL 409 (475)
Q Consensus 337 lvTtR~~~v~~~~~---~~~~~~l----~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~ 409 (475)
|||||+..-..... ....+++ =.|+.+|+-++|.......- .....+.|++..+|-+-|+..++-.
T Consensus 164 vv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L-------d~~~~~~L~~~teGW~~al~L~aLa 236 (894)
T COG2909 164 VVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL-------DAADLKALYDRTEGWAAALQLIALA 236 (894)
T ss_pred EEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC-------ChHHHHHHHhhcccHHHHHHHHHHH
Confidence 99999853221111 1122222 24889999999997753221 2345677999999999999999999
Q ss_pred hcCCCChhHHHHHHhccccccCCCccchH-HHHHHhhhcCChhHHHHhhhhcccCC
Q 046770 410 LHGKYDPSDWESVLNSRIWDLSQGRCDIV-HTLALSYHYLSRPLKKCFAYCSLFPK 464 (475)
Q Consensus 410 L~~~~~~~~w~~~l~~~~~~~~~~~~~i~-~~l~~sy~~L~~~~k~cf~~~sifp~ 464 (475)
++.+.+.+.-...+. +....+. -...--++.||+++|..++-||+++.
T Consensus 237 ~~~~~~~~q~~~~Ls-------G~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~ 285 (894)
T COG2909 237 LRNNTSAEQSLRGLS-------GAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR 285 (894)
T ss_pred ccCCCcHHHHhhhcc-------chHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH
Confidence 985533333222221 1111122 23344578999999999999999864
No 12
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.04 E-value=2.2e-09 Score=102.72 Aligned_cols=174 Identities=25% Similarity=0.307 Sum_probs=107.2
Q ss_pred cccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHH
Q 046770 194 EAKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTK 273 (475)
Q Consensus 194 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~ 273 (475)
..+++|....+.++++ . +.+....+||++|+||||||+.+... ....| ..++-..+-.+-++
T Consensus 29 Q~HLlg~~~~lrr~v~---~--------~~l~SmIl~GPPG~GKTTlA~liA~~--~~~~f-----~~~sAv~~gvkdlr 90 (436)
T COG2256 29 QEHLLGEGKPLRRAVE---A--------GHLHSMILWGPPGTGKTTLARLIAGT--TNAAF-----EALSAVTSGVKDLR 90 (436)
T ss_pred hHhhhCCCchHHHHHh---c--------CCCceeEEECCCCCCHHHHHHHHHHh--hCCce-----EEeccccccHHHHH
Confidence 3456666555555544 2 56777889999999999999999983 33334 22333332222223
Q ss_pred HHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEE--ecCChHHH---Hh
Q 046770 274 SILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIII--TTRNADAA---LI 348 (475)
Q Consensus 274 ~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~v~---~~ 348 (475)
.+++.. -+....|++.+|++|.|+.-+....+.++..+ ..|.-|+| ||.++... ..
T Consensus 91 ~i~e~a----------------~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~AL 151 (436)
T COG2256 91 EIIEEA----------------RKNRLLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPAL 151 (436)
T ss_pred HHHHHH----------------HHHHhcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHHH
Confidence 333221 12233589999999999887665555555444 35666665 66665332 23
Q ss_pred cCCCceeeCCCCCHHHHHHHHhhcccCCCCC-C--CCchHHHHHHHHHHhcCCchHHHH
Q 046770 349 MGTVQAYPLKGLSNDDCMCLFTQHSLETRDF-S--MHQPLKEIGAKIVIKCNGLPLAAK 404 (475)
Q Consensus 349 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-~--~~~~~~~~~~~I~~~c~G~PLai~ 404 (475)
.+...++.+++|+.++...++.+.+...... . .....+++...|+..++|---++-
T Consensus 152 lSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aL 210 (436)
T COG2256 152 LSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRAL 210 (436)
T ss_pred hhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHH
Confidence 3456889999999999999999843222111 1 111224566778888888765443
No 13
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.04 E-value=9.8e-09 Score=103.73 Aligned_cols=180 Identities=21% Similarity=0.231 Sum_probs=108.0
Q ss_pred cccccchhHHH---HHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHH
Q 046770 196 KVYGRSKEREE---IVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVT 272 (475)
Q Consensus 196 ~~vGR~~e~~~---l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l 272 (475)
+++|++..+.. |..++.. .....+.|+|++|+||||||+.+++.. ... |+.++....-..-+
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~--------~~~~~ilL~GppGtGKTtLA~~ia~~~--~~~-----~~~l~a~~~~~~~i 77 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEA--------GRLSSMILWGPPGTGKTTLARIIAGAT--DAP-----FEALSAVTSGVKDL 77 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHc--------CCCceEEEECCCCCCHHHHHHHHHHHh--CCC-----EEEEecccccHHHH
Confidence 57887776555 6776655 345578899999999999999998842 222 22222221111112
Q ss_pred HHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEE--ecCChHHH---H
Q 046770 273 KSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIII--TTRNADAA---L 347 (475)
Q Consensus 273 ~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~v~---~ 347 (475)
+.++..... ....+++.+|+||+++.......+.++..+.. +..+++ ||.+.... .
T Consensus 78 r~ii~~~~~----------------~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 78 REVIEEARQ----------------RRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPA 138 (413)
T ss_pred HHHHHHHHH----------------hhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHH
Confidence 222222110 11246788999999987766566666655543 444444 34443211 2
Q ss_pred hcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHh
Q 046770 348 IMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCLL 410 (475)
Q Consensus 348 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L 410 (475)
..+....+.+.+++.++...++.+.+....... .....+....|++.|+|.+..+..+...+
T Consensus 139 L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~-i~i~~~al~~l~~~s~Gd~R~aln~Le~~ 200 (413)
T PRK13342 139 LLSRAQVFELKPLSEEDIEQLLKRALEDKERGL-VELDDEALDALARLANGDARRALNLLELA 200 (413)
T ss_pred HhccceeeEeCCCCHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 223347799999999999999987653211100 12234667789999999998776554443
No 14
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.04 E-value=4.1e-10 Score=110.35 Aligned_cols=242 Identities=17% Similarity=0.114 Sum_probs=123.0
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKS 274 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~ 274 (475)
.+|+|+++.++.+..++.. ..... .....+.|+|++|+|||+||+.+++... ..+ .++..+ .......+..
T Consensus 25 ~~~vG~~~~~~~l~~~l~~-~~~~~--~~~~~~ll~GppG~GKT~la~~ia~~l~--~~~---~~~~~~-~~~~~~~l~~ 95 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEA-AKKRG--EALDHVLLYGPPGLGKTTLANIIANEMG--VNI---RITSGP-ALEKPGDLAA 95 (328)
T ss_pred HHhcCcHHHHHHHHHHHHH-HHhcC--CCCCcEEEECCCCccHHHHHHHHHHHhC--CCe---EEEecc-cccChHHHHH
Confidence 4699999999999887754 11111 3456788999999999999999998532 211 111111 1111122223
Q ss_pred HHHHhhcCCC----CCCCh-HHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCChHHHHhc
Q 046770 275 ILRSVAMGIV----DHNDL-NLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNADAALIM 349 (475)
Q Consensus 275 il~~l~~~~~----~~~~~-~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~ 349 (475)
++..+..... +.... ....+.+...+.+.+..+++|+..+.. .+...+ ...+-|..|++...+....
T Consensus 96 ~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~-----~~~~~l---~~~~li~at~~~~~l~~~L 167 (328)
T PRK00080 96 ILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAAR-----SIRLDL---PPFTLIGATTRAGLLTSPL 167 (328)
T ss_pred HHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcccc-----ceeecC---CCceEEeecCCcccCCHHH
Confidence 3322211100 00000 011122223333333334443332110 000011 1234566666654332211
Q ss_pred -C-CCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHhcCCCChhHHHHHHhccc
Q 046770 350 -G-TVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCLLHGKYDPSDWESVLNSRI 427 (475)
Q Consensus 350 -~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~~~~~~w~~~l~~~~ 427 (475)
. ....+++++++.++..+++.+.+..... . ...+....|++.|+|.|-.+..+...+. .|......
T Consensus 168 ~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~-~---~~~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~~~-- 235 (328)
T PRK00080 168 RDRFGIVQRLEFYTVEELEKIVKRSARILGV-E---IDEEGALEIARRSRGTPRIANRLLRRVR------DFAQVKGD-- 235 (328)
T ss_pred HHhcCeeeecCCCCHHHHHHHHHHHHHHcCC-C---cCHHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHcCC--
Confidence 1 1256899999999999999987754322 1 2245678899999999976665555332 12111100
Q ss_pred cccCCC-ccchHHHHHHhhhcCChhHHHHhh-hhcccCCC
Q 046770 428 WDLSQG-RCDIVHTLALSYHYLSRPLKKCFA-YCSLFPKD 465 (475)
Q Consensus 428 ~~~~~~-~~~i~~~l~~sy~~L~~~~k~cf~-~~sifp~~ 465 (475)
...... -......+...|..|++..+..+. .+..|+.+
T Consensus 236 ~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~ 275 (328)
T PRK00080 236 GVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG 275 (328)
T ss_pred CCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC
Confidence 000000 012334455667778777777664 66666655
No 15
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.97 E-value=5.2e-08 Score=102.24 Aligned_cols=214 Identities=12% Similarity=0.013 Sum_probs=123.0
Q ss_pred cccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCccc---ccCcC--eEEEEEecCCCCH
Q 046770 194 EAKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRV---QCHFD--LKAWTYVSQDFDI 268 (475)
Q Consensus 194 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~---~~~F~--~~~wv~v~~~~~~ 268 (475)
+..+.||++|+++|...|...-.+ . ....++.|+|++|.|||++++.|.+.... ..... ..++|++....+.
T Consensus 754 PD~LPhREeEIeeLasfL~paIkg-s--gpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp 830 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQ-S--GSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHP 830 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhc-C--CCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCH
Confidence 357899999999999988652221 1 22357789999999999999999874321 11111 3567888777788
Q ss_pred HHHHHHHHHHhhcCCCC-CCChHHHHHHHHHHh-C--CceEEEEEECCCCCChhhHhHhhCcCC-CCCCCcEEEE--ecC
Q 046770 269 IRVTKSILRSVAMGIVD-HNDLNLLQWKLKKQL-F--GKRFLLVLDDVWNENYNDWIDLSRPFQ-DGAPGSKIII--TTR 341 (475)
Q Consensus 269 ~~~l~~il~~l~~~~~~-~~~~~~l~~~l~~~l-~--~kr~LlVlDdv~~~~~~~~~~l~~~l~-~~~~gs~ilv--TtR 341 (475)
..++..|..++....+. ..........+...+ . +...+||||+++......-+.|...+. ....+++|+| +|.
T Consensus 831 ~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISN 910 (1164)
T PTZ00112 831 NAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISN 910 (1164)
T ss_pred HHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecC
Confidence 88999999888554332 222333444444443 2 224589999996432111111221221 1123455443 333
Q ss_pred Ch--------HHHHhcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHhc
Q 046770 342 NA--------DAALIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCLLH 411 (475)
Q Consensus 342 ~~--------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~ 411 (475)
.. .+...+ ....+...|++.++..+++..++........+..++-+++.++...|-.=.||.++-....
T Consensus 911 dlDLperLdPRLRSRL-g~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 911 TMDLPERLIPRCRSRL-AFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred chhcchhhhhhhhhcc-ccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 21 111111 1234677999999999999988754322223333444444444444444556665554443
No 16
>PRK06893 DNA replication initiation factor; Validated
Probab=98.88 E-value=1.6e-08 Score=93.62 Aligned_cols=155 Identities=16% Similarity=0.159 Sum_probs=96.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCce
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKR 304 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr 304 (475)
+.+.|+|++|+|||+|++.+++.. ........|++..... ..... +.+.+. +.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~--~~~~~~~~y~~~~~~~---~~~~~---------------------~~~~~~-~~ 92 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHY--LLNQRTAIYIPLSKSQ---YFSPA---------------------VLENLE-QQ 92 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEeeHHHhh---hhhHH---------------------HHhhcc-cC
Confidence 578999999999999999999853 2222344666553210 00001 111111 23
Q ss_pred EEEEEECCCCCC-hhhHhH-hhCcCCCC-CCCcEEE-EecCC---------hHHHHhcCCCceeeCCCCCHHHHHHHHhh
Q 046770 305 FLLVLDDVWNEN-YNDWID-LSRPFQDG-APGSKII-ITTRN---------ADAALIMGTVQAYPLKGLSNDDCMCLFTQ 371 (475)
Q Consensus 305 ~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~il-vTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 371 (475)
-+|+|||+|... ...|.. +...+... ..|..+| +|++. +.+...+.....+++++++.++.++++.+
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~ 172 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQR 172 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHH
Confidence 499999998642 234553 33333221 2355554 45543 35555555667899999999999999998
Q ss_pred cccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHh
Q 046770 372 HSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCLL 410 (475)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L 410 (475)
.+....- .-.+++..-|++.+.|..-.+..+-..|
T Consensus 173 ~a~~~~l----~l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 173 NAYQRGI----ELSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHcCC----CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 8864321 1225677789999998887777665555
No 17
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.88 E-value=1.7e-08 Score=109.97 Aligned_cols=261 Identities=15% Similarity=0.153 Sum_probs=153.9
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccc-cCcCeEEEEEecCCC---CHHHH
Q 046770 196 KVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQ-CHFDLKAWTYVSQDF---DIIRV 271 (475)
Q Consensus 196 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv~v~~~~---~~~~~ 271 (475)
+++||+.|++.|...+..... +...++.+.|..|||||+|++.|..-...+ ..|-.-.+-....+. .....
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~-----g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~ 75 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSK-----GRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQA 75 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhC-----CCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHH
Confidence 378999999999999876333 344699999999999999999998732111 111111111111111 12234
Q ss_pred HHHHHHHhhcCCC--------------------------------C---------CCChH-----HHHHHHHHHh-CCce
Q 046770 272 TKSILRSVAMGIV--------------------------------D---------HNDLN-----LLQWKLKKQL-FGKR 304 (475)
Q Consensus 272 l~~il~~l~~~~~--------------------------------~---------~~~~~-----~l~~~l~~~l-~~kr 304 (475)
+++++.++..... + ..... .....+.... +.++
T Consensus 76 ~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~p 155 (849)
T COG3899 76 FRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHP 155 (849)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCC
Confidence 4444444311110 0 00000 1122233333 4569
Q ss_pred EEEEEECCCCCChhhHhHhhCcCCCCC------CCcEEEEecCCh--HHHHhcCCCceeeCCCCCHHHHHHHHhhcccCC
Q 046770 305 FLLVLDDVWNENYNDWIDLSRPFQDGA------PGSKIIITTRNA--DAALIMGTVQAYPLKGLSNDDCMCLFTQHSLET 376 (475)
Q Consensus 305 ~LlVlDdv~~~~~~~~~~l~~~l~~~~------~gs~ilvTtR~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~ 376 (475)
.++|+||+++.+....+-+...+.... +..-.+.|.+.. .+-........+.|.||+..+...+........
T Consensus 156 lVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~ 235 (849)
T COG3899 156 LVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT 235 (849)
T ss_pred eEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc
Confidence 999999997776555544432222111 111223333332 222222345789999999999999998776432
Q ss_pred CCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHhcCC------CChhHHHHHHhccccccCCCccchHHHHHHhhhcCCh
Q 046770 377 RDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCLLHGK------YDPSDWESVLNSRIWDLSQGRCDIVHTLALSYHYLSR 450 (475)
Q Consensus 377 ~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~------~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~ 450 (475)
. ....+....|+++..|+|+.+..+-..+..+ .+...|..-..+. ...+.. +.+...+..-.+.||.
T Consensus 236 ~-----~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i-~~~~~~-~~vv~~l~~rl~kL~~ 308 (849)
T COG3899 236 K-----LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASL-GILATT-DAVVEFLAARLQKLPG 308 (849)
T ss_pred c-----cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhc-CCchhh-HHHHHHHHHHHhcCCH
Confidence 2 2334667779999999999999999888874 3334443222111 111111 2245568888999999
Q ss_pred hHHHHhhhhcccCCCccc
Q 046770 451 PLKKCFAYCSLFPKDYEF 468 (475)
Q Consensus 451 ~~k~cf~~~sifp~~~~i 468 (475)
..++.+...|++-..|..
T Consensus 309 ~t~~Vl~~AA~iG~~F~l 326 (849)
T COG3899 309 TTREVLKAAACIGNRFDL 326 (849)
T ss_pred HHHHHHHHHHHhCccCCH
Confidence 999999999998877663
No 18
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.86 E-value=5.7e-09 Score=87.80 Aligned_cols=117 Identities=16% Similarity=0.135 Sum_probs=81.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcCcccc---cCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHh
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYNDSRVQ---CHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQL 300 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~---~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l 300 (475)
-+++.|+|++|+|||++++.+.++.... ..-...+|+.+....+...+...++.++........+...+...+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4689999999999999999998843111 0023567999988889999999999999987766566777778888887
Q ss_pred CCc-eEEEEEECCCCC-ChhhHhHhhCcCCCCCCCcEEEEecCC
Q 046770 301 FGK-RFLLVLDDVWNE-NYNDWIDLSRPFQDGAPGSKIIITTRN 342 (475)
Q Consensus 301 ~~k-r~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~ 342 (475)
... ..+|||||++.. +...++.+...+. ..+.++|+..+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 655 459999999665 4444555544333 567778777664
No 19
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.81 E-value=3.9e-08 Score=91.15 Aligned_cols=171 Identities=15% Similarity=0.115 Sum_probs=99.4
Q ss_pred chhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhh
Q 046770 201 SKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVA 280 (475)
Q Consensus 201 ~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~ 280 (475)
+..++.+..++.. .....+.|+|++|+|||+||+.+++.. .......+++++..-.+. ...+
T Consensus 23 ~~~~~~l~~~~~~--------~~~~~lll~G~~G~GKT~la~~~~~~~--~~~~~~~~~i~~~~~~~~---~~~~----- 84 (226)
T TIGR03420 23 AELLAALRQLAAG--------KGDRFLYLWGESGSGKSHLLQAACAAA--EERGKSAIYLPLAELAQA---DPEV----- 84 (226)
T ss_pred HHHHHHHHHHHhc--------CCCCeEEEECCCCCCHHHHHHHHHHHH--HhcCCcEEEEeHHHHHHh---HHHH-----
Confidence 3456666666543 234678999999999999999998743 222234455555432110 0011
Q ss_pred cCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCChh-hH-hHhhCcCCC-CCCCcEEEEecCChH---------HHHh
Q 046770 281 MGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYN-DW-IDLSRPFQD-GAPGSKIIITTRNAD---------AALI 348 (475)
Q Consensus 281 ~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~-~~-~~l~~~l~~-~~~gs~ilvTtR~~~---------v~~~ 348 (475)
...+.+ .-+|||||++..... .| ..+...+.. ...+..+|+||+... +...
T Consensus 85 ----------------~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r 147 (226)
T TIGR03420 85 ----------------LEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTR 147 (226)
T ss_pred ----------------Hhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHH
Confidence 111222 238999999754321 22 233333321 123457888887532 1222
Q ss_pred cCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHh
Q 046770 349 MGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCLL 410 (475)
Q Consensus 349 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L 410 (475)
+.....+++.+++.++...++...+..... . -..+..+.|++.+.|+|..+.-+...+
T Consensus 148 ~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~---~~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 148 LAWGLVFQLPPLSDEEKIAALQSRAARRGL-Q---LPDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred HhcCeeEecCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 222467899999999999998865432211 1 123556678888999998877665443
No 20
>PTZ00202 tuzin; Provisional
Probab=98.81 E-value=8.7e-07 Score=86.76 Aligned_cols=168 Identities=13% Similarity=0.140 Sum_probs=104.0
Q ss_pred CCcccccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHH
Q 046770 190 SLVHEAKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDII 269 (475)
Q Consensus 190 ~~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 269 (475)
.+.+.+.|+||+.++..|...|...+. ...+++.|+|++|+|||||++.+..... + ...+++.. +..
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~-----~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~e 323 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDT-----AHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTE 323 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCC-----CCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHH
Confidence 444567899999999999999975232 2346999999999999999999987432 1 13333333 679
Q ss_pred HHHHHHHHHhhcCCCCCCChHHHHHHHHHHh-----C-CceEEEEEECCCCCCh-hhHhHhhCcCCCCCCCcEEEEecCC
Q 046770 270 RVTKSILRSVAMGIVDHNDLNLLQWKLKKQL-----F-GKRFLLVLDDVWNENY-NDWIDLSRPFQDGAPGSKIIITTRN 342 (475)
Q Consensus 270 ~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l-----~-~kr~LlVlDdv~~~~~-~~~~~l~~~l~~~~~gs~ilvTtR~ 342 (475)
+++..++.+|+... .....++...|.+.+ . |++.+||+-==..++. ..+.+. ..|.....-|.|++---.
T Consensus 324 ElLr~LL~ALGV~p--~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~evpl 400 (550)
T PTZ00202 324 DTLRSVVKALGVPN--VEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVPL 400 (550)
T ss_pred HHHHHHHHHcCCCC--cccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeeehH
Confidence 99999999999732 222234444444433 3 6777777643211111 112221 123333445777765544
Q ss_pred hHHHHhc---CCCceeeCCCCCHHHHHHHHhhcc
Q 046770 343 ADAALIM---GTVQAYPLKGLSNDDCMCLFTQHS 373 (475)
Q Consensus 343 ~~v~~~~---~~~~~~~l~~L~~~~~~~lf~~~~ 373 (475)
+...... .....|.+.+++.+++..+..+..
T Consensus 401 eslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 401 ESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hhcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 3322111 123457889999999998887653
No 21
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.80 E-value=2.4e-07 Score=90.21 Aligned_cols=177 Identities=15% Similarity=0.241 Sum_probs=116.8
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCc----ccccCcCeEEEEEe-cCCCCHHH
Q 046770 196 KVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDS----RVQCHFDLKAWTYV-SQDFDIIR 270 (475)
Q Consensus 196 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~----~~~~~F~~~~wv~v-~~~~~~~~ 270 (475)
+++|-+.-++.+..++.. . .-.....++|+.|+||||+|+.++... ....|.|...|... +....+.+
T Consensus 5 ~i~g~~~~~~~l~~~~~~-~------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ 77 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIK-N------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD 77 (313)
T ss_pred hccCcHHHHHHHHHHHHc-C------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH
Confidence 578888888899998865 2 223567899999999999999887631 23456666555442 22223323
Q ss_pred HHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCChHHH--Hh
Q 046770 271 VTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNADAA--LI 348 (475)
Q Consensus 271 ~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~--~~ 348 (475)
++++.+.+.... ..+++=++|+|+++..+...+..++..+.....++.+|++|.+.+.. ..
T Consensus 78 -ir~~~~~~~~~p----------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI 140 (313)
T PRK05564 78 -IRNIIEEVNKKP----------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTI 140 (313)
T ss_pred -HHHHHHHHhcCc----------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHH
Confidence 233333332211 12455678888887777778999999988777788888888764322 12
Q ss_pred cCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHH
Q 046770 349 MGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAK 404 (475)
Q Consensus 349 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 404 (475)
.+....+++.+++.++....+.+.... .. .+.+..++..++|.|.-+.
T Consensus 141 ~SRc~~~~~~~~~~~~~~~~l~~~~~~-----~~---~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 141 KSRCQIYKLNRLSKEEIEKFISYKYND-----IK---EEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred HhhceeeeCCCcCHHHHHHHHHHHhcC-----CC---HHHHHHHHHHcCCCHHHHH
Confidence 233478999999999998888755321 11 2335678889999887554
No 22
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.80 E-value=1.2e-07 Score=93.46 Aligned_cols=202 Identities=12% Similarity=0.055 Sum_probs=111.4
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcC-eEEEEEecCCCCH-HHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFD-LKAWTYVSQDFDI-IRVT 272 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~v~~~~~~-~~~l 272 (475)
.+++|++..++.|..++.. +..+.+.++|++|+||||+|+.+.+... ...+. ..+.+++++..+. ...+
T Consensus 15 ~~~~g~~~~~~~L~~~~~~--------~~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~ 85 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDS--------PNLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYL 85 (337)
T ss_pred HHhcCCHHHHHHHHHHHhC--------CCCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhh
Confidence 4688999999999998865 3345688999999999999999887432 11121 1233333321100 0000
Q ss_pred H---HHHHHhhcC-CCCCCChHHHHHHHHHHh-----CCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCCh
Q 046770 273 K---SILRSVAMG-IVDHNDLNLLQWKLKKQL-----FGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNA 343 (475)
Q Consensus 273 ~---~il~~l~~~-~~~~~~~~~l~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 343 (475)
. .....+... .......+.....++... .+.+-+|||||+..........+...+......+++|+||...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~ 165 (337)
T PRK12402 86 VEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQP 165 (337)
T ss_pred hcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCCh
Confidence 0 000000000 000111122222222221 2344589999997655444444554444333456787777543
Q ss_pred H-HH-HhcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHHH
Q 046770 344 D-AA-LIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCL 409 (475)
Q Consensus 344 ~-v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~ 409 (475)
. +. ........+.+.+++.++...++.+.+...+. . -..+....|++.++|.+-.+......
T Consensus 166 ~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~-~---~~~~al~~l~~~~~gdlr~l~~~l~~ 229 (337)
T PRK12402 166 SKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV-D---YDDDGLELIAYYAGGDLRKAILTLQT 229 (337)
T ss_pred hhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2 21 12223467889999999999999876543321 1 22456777899999987766544443
No 23
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.76 E-value=3.5e-07 Score=90.81 Aligned_cols=194 Identities=15% Similarity=0.171 Sum_probs=111.4
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKS 274 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~ 274 (475)
.+++|-+.-++.+.+.+.. . .-...+.++|+.|+||||+|+.+++...-..... ..+...-.....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~-~------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~ 81 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSL-G------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKE 81 (363)
T ss_pred hhccChHHHHHHHHHHHHc-C------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHH
Confidence 3689999999999888866 2 2234678999999999999999987421111000 000000000011
Q ss_pred HHHHhhc-----CCCCCCChHHHHHHHHHHh-----CCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCCh-
Q 046770 275 ILRSVAM-----GIVDHNDLNLLQWKLKKQL-----FGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNA- 343 (475)
Q Consensus 275 il~~l~~-----~~~~~~~~~~l~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~- 343 (475)
+...... ........+... .+.+.+ .+++-++|||+++..+...+..++..+......+.+|++|.+.
T Consensus 82 ~~~~~~~d~~~~~~~~~~~v~~ir-~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~ 160 (363)
T PRK14961 82 IEKGLCLDLIEIDAASRTKVEEMR-EILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVE 160 (363)
T ss_pred HhcCCCCceEEecccccCCHHHHH-HHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChH
Confidence 1000000 000001122211 121211 2445699999998777666777877776555566777766543
Q ss_pred HHHH-hcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHH
Q 046770 344 DAAL-IMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALG 407 (475)
Q Consensus 344 ~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 407 (475)
.+.. ..+....+++.+++.++..+++.+.+...+. .-..+....|++.++|.|-.+....
T Consensus 161 ~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~----~i~~~al~~ia~~s~G~~R~al~~l 221 (363)
T PRK14961 161 KIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESI----DTDEYALKLIAYHAHGSMRDALNLL 221 (363)
T ss_pred hhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3322 2233467999999999999988876543221 1123566779999999887544443
No 24
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.76 E-value=1.9e-07 Score=97.56 Aligned_cols=194 Identities=15% Similarity=0.182 Sum_probs=114.6
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKS 274 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~ 274 (475)
.+++|.+.-++.|.+++.. . .-...+.++|+.|+||||+|+.+.+...-...+. +..+..-.....
T Consensus 16 dEVIGQe~Vv~~L~~aL~~-g------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~-------~~PCG~C~sCr~ 81 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDG-G------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT-------SQPCGVCRACRE 81 (830)
T ss_pred HHHcCcHHHHHHHHHHHhc-C------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC-------CCCCcccHHHHH
Confidence 4689999999999999866 2 2234567999999999999998876421111110 000111111111
Q ss_pred HHHH-----hhcCCCCCCChHHHHHHHHHH----hCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCChH-
Q 046770 275 ILRS-----VAMGIVDHNDLNLLQWKLKKQ----LFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNAD- 344 (475)
Q Consensus 275 il~~-----l~~~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~- 344 (475)
|... +..........+++.+.+... ..++.-++|||+++..+...|..++..+..-....++|+||++..
T Consensus 82 I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~K 161 (830)
T PRK07003 82 IDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQK 161 (830)
T ss_pred HhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhh
Confidence 1100 000000111122222222221 134555889999988877778888887765556778888877643
Q ss_pred HH-HhcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchH-HHHHH
Q 046770 345 AA-LIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPL-AAKAL 406 (475)
Q Consensus 345 v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL-ai~~~ 406 (475)
+. .+.+....+++++++.++..+.+.+.+...+. .-..+....|++.++|..- ++.++
T Consensus 162 Ip~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI----~id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 162 IPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI----AFEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred ccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 21 22233477999999999999999877643321 1124566779999998654 55543
No 25
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.75 E-value=2.2e-07 Score=98.90 Aligned_cols=183 Identities=15% Similarity=0.174 Sum_probs=113.9
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccE-EEEEEccCCCcHHHHHHHHHcCcccccCcC------------------
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFS-VVSIIGMGGLGKTTLAQLVYNDSRVQCHFD------------------ 255 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~-vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~------------------ 255 (475)
.+++|-+.-+..|.+++.. +++. .+.++|+.|+||||+|+.+++...-.....
T Consensus 16 ddIIGQe~Iv~~LknaI~~--------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~ 87 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQ--------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRF 87 (944)
T ss_pred HHhcCcHHHHHHHHHHHHh--------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCC
Confidence 3689999999999988876 3333 458999999999999999987431111100
Q ss_pred -eEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHH-HhCCceEEEEEECCCCCChhhHhHhhCcCCCCCCC
Q 046770 256 -LKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKK-QLFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPG 333 (475)
Q Consensus 256 -~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 333 (475)
..+++.......+. .++.++. .+.. -..+++-++|||+++..+...+..++..+..-...
T Consensus 88 ~DviEidAas~~kVD-dIReLie-----------------~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~ 149 (944)
T PRK14949 88 VDLIEVDAASRTKVD-DTRELLD-----------------NVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEH 149 (944)
T ss_pred ceEEEeccccccCHH-HHHHHHH-----------------HHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCC
Confidence 01111111001111 1112221 1111 12466779999999988877888888887655556
Q ss_pred cEEEEecCC-hHHH-HhcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHH
Q 046770 334 SKIIITTRN-ADAA-LIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALG 407 (475)
Q Consensus 334 s~ilvTtR~-~~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 407 (475)
+++|++|.+ ..+. .+......+++++|+.++...++.+.+-.... ....+....|++.++|.|--+..+.
T Consensus 150 vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI----~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 150 VKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL----PFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred eEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 666666554 3333 22334478999999999999999876543211 1224566779999999886554443
No 26
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.74 E-value=7.9e-08 Score=86.23 Aligned_cols=183 Identities=19% Similarity=0.175 Sum_probs=99.0
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKS 274 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~ 274 (475)
.+|+|-++-+..+.-++.. ....+ ..+..+.++|++|+||||||+.++++. ...|. +.+...-...
T Consensus 24 ~efiGQ~~l~~~l~i~i~a-a~~r~--~~l~h~lf~GPPG~GKTTLA~IIA~e~--~~~~~---~~sg~~i~k~------ 89 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRA-AKKRG--EALDHMLFYGPPGLGKTTLARIIANEL--GVNFK---ITSGPAIEKA------ 89 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHH-HHCTT--S---EEEEESSTTSSHHHHHHHHHHHC--T--EE---EEECCC--SC------
T ss_pred HHccCcHHHHhhhHHHHHH-HHhcC--CCcceEEEECCCccchhHHHHHHHhcc--CCCeE---eccchhhhhH------
Confidence 4799988877776554432 11001 456788999999999999999999943 33332 2221110011
Q ss_pred HHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCC--------CCC-----------cE
Q 046770 275 ILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDG--------APG-----------SK 335 (475)
Q Consensus 275 il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~--------~~g-----------s~ 335 (475)
.++...+.. + +++-+|++|+++..+...-+.+...+.++ +.+ +-
T Consensus 90 ---------------~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 90 ---------------GDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp ---------------HHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred ---------------HHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 111112211 1 23457888999877654444444433221 111 23
Q ss_pred EEEecCChHHHHhcCC-C-ceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 046770 336 IIITTRNADAALIMGT-V-QAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCLLHG 412 (475)
Q Consensus 336 ilvTtR~~~v~~~~~~-~-~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~ 412 (475)
|=.|||...+...+.. . -..+|+..+.+|-..+..+.+..-. -+-..+.+.+|+++|.|-|--+.-+-+..+.
T Consensus 153 igATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~----i~i~~~~~~~Ia~rsrGtPRiAnrll~rvrD 227 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN----IEIDEDAAEEIARRSRGTPRIANRLLRRVRD 227 (233)
T ss_dssp EEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHHHHHHHHCC
T ss_pred eeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC----CCcCHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 4457776544433332 2 3457999999999999998765432 2344678889999999999877766666554
No 27
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=7.6e-07 Score=87.67 Aligned_cols=206 Identities=15% Similarity=0.088 Sum_probs=128.7
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHH
Q 046770 196 KVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSI 275 (475)
Q Consensus 196 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~i 275 (475)
.+.+|+.+++++...|...-.+ ....-+.|+|.+|+|||+.++.+.+.......=...++|++....++..++..|
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~----~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i 93 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRG----ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKI 93 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcC----CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHH
Confidence 4899999999999888662222 222338899999999999999999843222111127899999999999999999
Q ss_pred HHHhhcCCCCCCChHHHHHHHHHHhC--CceEEEEEECCCCCChhhHhHhhCcCCCCC-CCcE--EEEecCChHHHHhcC
Q 046770 276 LRSVAMGIVDHNDLNLLQWKLKKQLF--GKRFLLVLDDVWNENYNDWIDLSRPFQDGA-PGSK--IIITTRNADAALIMG 350 (475)
Q Consensus 276 l~~l~~~~~~~~~~~~l~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-~gs~--ilvTtR~~~v~~~~~ 350 (475)
+++++..........+....+.+.+. ++.+++|||++.......-+.+...+.... ..++ +|..+.+..+...+.
T Consensus 94 ~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld 173 (366)
T COG1474 94 LNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLD 173 (366)
T ss_pred HHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhh
Confidence 99998555555666677777777774 578999999995432111122222222211 1343 344444433332221
Q ss_pred -------CCceeeCCCCCHHHHHHHHhhcccCCCC-CCCCchHHHHHHHHHHhcCC-chHHHHH
Q 046770 351 -------TVQAYPLKGLSNDDCMCLFTQHSLETRD-FSMHQPLKEIGAKIVIKCNG-LPLAAKA 405 (475)
Q Consensus 351 -------~~~~~~l~~L~~~~~~~lf~~~~~~~~~-~~~~~~~~~~~~~I~~~c~G-~PLai~~ 405 (475)
....+...|-+.+|..+++..++-..-. ....+..-+.+..++..-+| -=.||.+
T Consensus 174 ~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidi 237 (366)
T COG1474 174 PRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDI 237 (366)
T ss_pred hhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHH
Confidence 2234778999999999999987643211 12333334444444444444 3344443
No 28
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.74 E-value=3.9e-07 Score=89.07 Aligned_cols=184 Identities=13% Similarity=0.085 Sum_probs=108.4
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEe--cCCCCHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYV--SQDFDIIRVT 272 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v--~~~~~~~~~l 272 (475)
.+++|++..++.+..++.. ...+.+.|+|++|+||||+|+.+.+... ...+. ..++.+ +..... ..+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~--------~~~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~-~~~i~~~~~~~~~~-~~~ 85 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKE--------KNMPHLLFAGPPGTGKTTAALALARELY-GEDWR-ENFLELNASDERGI-DVI 85 (319)
T ss_pred HHhcCcHHHHHHHHHHHhC--------CCCCeEEEECCCCCCHHHHHHHHHHHHc-CCccc-cceEEeccccccch-HHH
Confidence 4588999999999998865 3344579999999999999999987421 11121 112222 221111 112
Q ss_pred HHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCCh-HH-HHhcC
Q 046770 273 KSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNA-DA-ALIMG 350 (475)
Q Consensus 273 ~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v-~~~~~ 350 (475)
...+..+....+. ....+-++++|++..........+...+......+.+|+++... .+ .....
T Consensus 86 ~~~i~~~~~~~~~--------------~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~s 151 (319)
T PRK00440 86 RNKIKEFARTAPV--------------GGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQS 151 (319)
T ss_pred HHHHHHHHhcCCC--------------CCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHH
Confidence 2222221111000 01234589999997665445556665555444556777776432 11 11112
Q ss_pred CCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHH
Q 046770 351 TVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALG 407 (475)
Q Consensus 351 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 407 (475)
....+++.+++.++...++.+.+...+- . -..+....|++.++|.+.-+....
T Consensus 152 r~~~~~~~~l~~~ei~~~l~~~~~~~~~-~---i~~~al~~l~~~~~gd~r~~~~~l 204 (319)
T PRK00440 152 RCAVFRFSPLKKEAVAERLRYIAENEGI-E---ITDDALEAIYYVSEGDMRKAINAL 204 (319)
T ss_pred HhheeeeCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2356889999999998888877643321 1 124567778999999987654433
No 29
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.73 E-value=2.5e-08 Score=102.25 Aligned_cols=195 Identities=15% Similarity=0.153 Sum_probs=112.3
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKS 274 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~ 274 (475)
.+++|-+.-++.|..++.. . .-...+.++|++|+||||+|+.+++...-...+....|.|.+-. .+......
T Consensus 14 ~dvvGq~~v~~~L~~~i~~-~------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~-~i~~~~h~ 85 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQ-G------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL-AVRRGAHP 85 (504)
T ss_pred HHhcChHHHHHHHHHHHHc-C------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH-HHhcCCCC
Confidence 3689988888888888866 2 12245689999999999999998874321111211222221100 00000000
Q ss_pred HHHHhhcCCCCCCChHHHHHHHHHH-----hCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCC-hHHHH-
Q 046770 275 ILRSVAMGIVDHNDLNLLQWKLKKQ-----LFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRN-ADAAL- 347 (475)
Q Consensus 275 il~~l~~~~~~~~~~~~l~~~l~~~-----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~- 347 (475)
-+..+... .....+.+ +.+.+. +.+++-++|||+++..+...+..++..+......+.+|++|.. ..+..
T Consensus 86 dv~el~~~--~~~~vd~i-R~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~ 162 (504)
T PRK14963 86 DVLEIDAA--SNNSVEDV-RDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPT 162 (504)
T ss_pred ceEEeccc--ccCCHHHH-HHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChH
Confidence 00000000 11112221 122222 2355669999999877767788888877654455565555543 33322
Q ss_pred hcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHH
Q 046770 348 IMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAK 404 (475)
Q Consensus 348 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 404 (475)
.......+++.+++.++...++.+.+...+- . ...+....|++.++|.+--+.
T Consensus 163 I~SRc~~~~f~~ls~~el~~~L~~i~~~egi-~---i~~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 163 ILSRTQHFRFRRLTEEEIAGKLRRLLEAEGR-E---AEPEALQLVARLADGAMRDAE 215 (504)
T ss_pred HhcceEEEEecCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHH
Confidence 2233467999999999999999887643321 1 124567789999999987554
No 30
>PLN03025 replication factor C subunit; Provisional
Probab=98.73 E-value=2.3e-07 Score=90.52 Aligned_cols=187 Identities=13% Similarity=0.092 Sum_probs=109.0
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcC-eEEEEEecCCCCHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFD-LKAWTYVSQDFDIIRVTK 273 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~l~ 273 (475)
.+++|.+.-+..|..++.. ++.+.+.++|++|+||||+|+.+++... ...|. ..+-++.++.... +.++
T Consensus 13 ~~~~g~~~~~~~L~~~~~~--------~~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~eln~sd~~~~-~~vr 82 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARD--------GNMPNLILSGPPGTGKTTSILALAHELL-GPNYKEAVLELNASDDRGI-DVVR 82 (319)
T ss_pred HHhcCcHHHHHHHHHHHhc--------CCCceEEEECCCCCCHHHHHHHHHHHHh-cccCccceeeecccccccH-HHHH
Confidence 3578988888888877655 3345578999999999999999987421 11221 1111222222221 1223
Q ss_pred HHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCCh-HHH-HhcCC
Q 046770 274 SILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNA-DAA-LIMGT 351 (475)
Q Consensus 274 ~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~-~~~~~ 351 (475)
.++..+...... ...++.-+++||+++..+......++..+..-...+++|+++... .+. ...+.
T Consensus 83 ~~i~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SR 149 (319)
T PLN03025 83 NKIKMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSR 149 (319)
T ss_pred HHHHHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHh
Confidence 332222111000 002446699999998776555555655554334456777776542 111 11122
Q ss_pred CceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHH
Q 046770 352 VQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGC 408 (475)
Q Consensus 352 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~ 408 (475)
...+++++++.++....+...+-..+- ... .+....|++.++|..-.+.....
T Consensus 150 c~~i~f~~l~~~~l~~~L~~i~~~egi-~i~---~~~l~~i~~~~~gDlR~aln~Lq 202 (319)
T PLN03025 150 CAIVRFSRLSDQEILGRLMKVVEAEKV-PYV---PEGLEAIIFTADGDMRQALNNLQ 202 (319)
T ss_pred hhcccCCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 357899999999999998877643322 111 35567799999998765554433
No 31
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.72 E-value=1e-07 Score=81.28 Aligned_cols=124 Identities=19% Similarity=0.123 Sum_probs=71.9
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHH
Q 046770 198 YGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILR 277 (475)
Q Consensus 198 vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~ 277 (475)
+|++..+..+...+.. ...+.+.|+|++|+|||+|++.+++... ..-...+++..............+..
T Consensus 1 ~~~~~~~~~i~~~~~~--------~~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~ 70 (151)
T cd00009 1 VGQEEAIEALREALEL--------PPPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGH 70 (151)
T ss_pred CchHHHHHHHHHHHhC--------CCCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhh
Confidence 4778888888888765 2346789999999999999999998532 11234556655543332221111100
Q ss_pred HhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCCh---hhHhHhhCcCCCC---CCCcEEEEecCCh
Q 046770 278 SVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENY---NDWIDLSRPFQDG---APGSKIIITTRNA 343 (475)
Q Consensus 278 ~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~---~~~~~l~~~l~~~---~~gs~ilvTtR~~ 343 (475)
. ............++.+||+||++.... ..+..+...+... ..+..+|+||...
T Consensus 71 ~------------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 71 F------------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred h------------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 0 001111222345678999999975422 2233333333221 3578888888864
No 32
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.72 E-value=2.9e-07 Score=94.95 Aligned_cols=197 Identities=14% Similarity=0.147 Sum_probs=114.2
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccC--cCeEEEEEecCCCCHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCH--FDLKAWTYVSQDFDIIRVT 272 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~--F~~~~wv~v~~~~~~~~~l 272 (475)
.++||-+.-++.|.+++.. . .-...+.++|+.|+||||+|+.+.+...-... -.... +..+..-...
T Consensus 16 ddVIGQe~vv~~L~~al~~-g------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~----~~PCG~C~sC 84 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQ-Q------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT----AQPCGQCRAC 84 (700)
T ss_pred HHHcCcHHHHHHHHHHHHh-C------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC----CCCCcccHHH
Confidence 4689999999999999876 2 22345689999999999999998763211000 00000 0000000111
Q ss_pred HHHHHH-----hhcCCCCCCChHHHHHHHHHH----hCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCC-
Q 046770 273 KSILRS-----VAMGIVDHNDLNLLQWKLKKQ----LFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRN- 342 (475)
Q Consensus 273 ~~il~~-----l~~~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~- 342 (475)
..|... +..........+++.+.+... ..++.-++|||+++..+...+..++..+..-..++.+|++|.+
T Consensus 85 ~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep 164 (700)
T PRK12323 85 TEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDP 164 (700)
T ss_pred HHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCCh
Confidence 111000 000000111223332222221 1456669999999988878888888888755556666665554
Q ss_pred hHHH-HhcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHH
Q 046770 343 ADAA-LIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKAL 406 (475)
Q Consensus 343 ~~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 406 (475)
..+. .+.+....+.++.++.++..+.+.+.+...+. . ...+....|++.++|.|.-...+
T Consensus 165 ~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi-~---~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 165 QKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI-A---HEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred HhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 3332 22233467999999999999988876543221 1 11345577999999999755544
No 33
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.70 E-value=2e-08 Score=89.90 Aligned_cols=51 Identities=24% Similarity=0.319 Sum_probs=33.6
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccc
Q 046770 196 KVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQ 251 (475)
Q Consensus 196 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 251 (475)
.|+||+++++++...|.. ... ...+++.|+|++|+|||+|.+.++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~-~~~----~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDA-AQS----GSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGG-TSS---------EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH-HHc----CCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 489999999999999952 221 456899999999999999999998854333
No 34
>PF13173 AAA_14: AAA domain
Probab=98.70 E-value=4.3e-08 Score=82.16 Aligned_cols=119 Identities=21% Similarity=0.221 Sum_probs=78.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCce
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKR 304 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr 304 (475)
+++.|.|+.|+|||||+++++.+.. .....++++..+......... + ....+.+....++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~----------------~-~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADP----------------D-LLEYFLELIKPGK 62 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhh----------------h-hHHHHHHhhccCC
Confidence 6899999999999999999997532 234566766655332110000 0 2223333333467
Q ss_pred EEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCChHHHHh------cCCCceeeCCCCCHHHH
Q 046770 305 FLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNADAALI------MGTVQAYPLKGLSNDDC 365 (475)
Q Consensus 305 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~------~~~~~~~~l~~L~~~~~ 365 (475)
.+|+||++... ..|......+.+.....+|++|+.+...... .+....++|.||+..|.
T Consensus 63 ~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 63 KYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 89999999665 4687777777665567899999998655432 12235688999998764
No 35
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.69 E-value=3e-07 Score=86.84 Aligned_cols=158 Identities=18% Similarity=0.210 Sum_probs=101.6
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhC
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLF 301 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 301 (475)
+.++.+.+||++|+||||||+.+.+..+... ..||..+....-..-+++|+++... ...+.
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~---------------~~~l~ 220 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN---------------EKSLT 220 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH---------------HHhhh
Confidence 5678889999999999999999998654333 4466666554444444555544321 12345
Q ss_pred CceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEE--ecCChHHH---HhcCCCceeeCCCCCHHHHHHHHhhccc--
Q 046770 302 GKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIII--TTRNADAA---LIMGTVQAYPLKGLSNDDCMCLFTQHSL-- 374 (475)
Q Consensus 302 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~v~---~~~~~~~~~~l~~L~~~~~~~lf~~~~~-- 374 (475)
++|.+|++|+|+..+..+.+.+ |+.-.+|.-++| ||.++... ..+....++.|++|+.++...++.+..-
T Consensus 221 krkTilFiDEiHRFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l 297 (554)
T KOG2028|consen 221 KRKTILFIDEIHRFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASL 297 (554)
T ss_pred cceeEEEeHHhhhhhhhhhhcc---cceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhh
Confidence 7899999999976654333333 444456666555 77776443 2334557899999999999999987321
Q ss_pred CC-C---CCCCC---chHHHHHHHHHHhcCCchH
Q 046770 375 ET-R---DFSMH---QPLKEIGAKIVIKCNGLPL 401 (475)
Q Consensus 375 ~~-~---~~~~~---~~~~~~~~~I~~~c~G~PL 401 (475)
+. . ++..+ .....+.+-++..|+|-.-
T Consensus 298 ~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 298 GDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred ccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 11 1 11111 1345667778888888754
No 36
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=6.2e-07 Score=92.73 Aligned_cols=194 Identities=13% Similarity=0.148 Sum_probs=114.0
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKS 274 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~ 274 (475)
.+++|.+..++.|.+++.. . .-...+.++|+.|+||||+|+.+++...-.. ++. ..+++.-...+.
T Consensus 15 ddVIGQe~vv~~L~~aI~~-g------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~------~~~-~~pCg~C~sC~~ 80 (702)
T PRK14960 15 NELVGQNHVSRALSSALER-G------RLHHAYLFTGTRGVGKTTIARILAKCLNCET------GVT-STPCEVCATCKA 80 (702)
T ss_pred HHhcCcHHHHHHHHHHHHc-C------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCc------CCC-CCCCccCHHHHH
Confidence 4689999999999999876 2 2235778999999999999999876321110 100 000000011111
Q ss_pred HHHHhhc-----CCCCCCChHHHHHHHHHH----hCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCCh-H
Q 046770 275 ILRSVAM-----GIVDHNDLNLLQWKLKKQ----LFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNA-D 344 (475)
Q Consensus 275 il~~l~~-----~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~ 344 (475)
+...-.. ........+.....+... ..++.-++|||+++..+......++..+.....+..+|++|.+. .
T Consensus 81 I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~k 160 (702)
T PRK14960 81 VNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQK 160 (702)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHh
Confidence 1100000 000011222222222111 23566689999998877677777877776555567777777653 2
Q ss_pred HH-HhcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHH
Q 046770 345 AA-LIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKAL 406 (475)
Q Consensus 345 v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 406 (475)
+. ...+....+++++++.++....+.+.+...+. .-..+....|++.++|.+-.+..+
T Consensus 161 Ip~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI----~id~eAL~~IA~~S~GdLRdALnL 219 (702)
T PRK14960 161 LPITVISRCLQFTLRPLAVDEITKHLGAILEKEQI----AADQDAIWQIAESAQGSLRDALSL 219 (702)
T ss_pred hhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 21 22234578999999999999998876643322 122455677999999987655443
No 37
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.64 E-value=3e-08 Score=95.69 Aligned_cols=236 Identities=20% Similarity=0.245 Sum_probs=155.4
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcCcccccCcC-eEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFD-LKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLF 301 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 301 (475)
..+.+.++|.|||||||++-++.. +...|. .+.++.+....+...+...+...+....... +.....+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g---~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPG---DSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccccc---hHHHHHHHHHHh
Confidence 357899999999999999999887 455565 4555555555555555555555455443221 223345666777
Q ss_pred CceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCChHHHHhcCCCceeeCCCCCHH-HHHHHHhhcccCCCC-C
Q 046770 302 GKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNADAALIMGTVQAYPLKGLSND-DCMCLFTQHSLETRD-F 379 (475)
Q Consensus 302 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~~~~~~~~~-~ 379 (475)
++|.++|+||.... ...-..+...+..++..-.|+.|+|..... .+.....+.+|+.. ++.++|...+..... .
T Consensus 87 ~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccce
Confidence 89999999998332 112223333444455566888888875322 24456677777755 688888766533221 1
Q ss_pred CCCchHHHHHHHHHHhcCCchHHHHHHHHHhcCCCChhHHHHHHhccccccCCC-------ccchHHHHHHhhhcCChhH
Q 046770 380 SMHQPLKEIGAKIVIKCNGLPLAAKALGCLLHGKYDPSDWESVLNSRIWDLSQG-------RCDIVHTLALSYHYLSRPL 452 (475)
Q Consensus 380 ~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~~~~~~w~~~l~~~~~~~~~~-------~~~i~~~l~~sy~~L~~~~ 452 (475)
...........+|+++.+|.|++|...+...+.- ...+-..-++.....+.+. .....+.+.+||.-|..-.
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHH
Confidence 1223345678889999999999999999988876 4555444444332222222 1346678999999999999
Q ss_pred HHHhhhhcccCCCcccC
Q 046770 453 KKCFAYCSLFPKDYEFQ 469 (475)
Q Consensus 453 k~cf~~~sifp~~~~i~ 469 (475)
+-.|.-++.|...|...
T Consensus 242 ~~~~~rLa~~~g~f~~~ 258 (414)
T COG3903 242 RALFGRLAVFVGGFDLG 258 (414)
T ss_pred HHHhcchhhhhhhhccc
Confidence 99999999998887654
No 38
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.64 E-value=1.4e-07 Score=94.64 Aligned_cols=198 Identities=15% Similarity=0.096 Sum_probs=115.0
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCcc-EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHF-SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTK 273 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~ 273 (475)
.+++|-+.-+..|..++.. +++ ..+.++|+.|+||||+|+.+++...-..... ...+.....-..+..
T Consensus 18 ~dvVGQe~iv~~L~~~i~~--------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~---~~pCg~C~sC~~i~~ 86 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKS--------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIG---NEPCNECTSCLEITK 86 (484)
T ss_pred HHHhChHHHHHHHHHHHHc--------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccC---ccccCCCcHHHHHHc
Confidence 3689988888889988876 333 3578999999999999999987421111000 001111111111111
Q ss_pred HHHHH---hhc-CCCCCCChHHHHHHHHHH-hCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCC-hHHH-
Q 046770 274 SILRS---VAM-GIVDHNDLNLLQWKLKKQ-LFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRN-ADAA- 346 (475)
Q Consensus 274 ~il~~---l~~-~~~~~~~~~~l~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~- 346 (475)
..... +.. ...+.++...+...+... ..++.-++|||+++..+...+..++..+........+|++|.. ..+.
T Consensus 87 g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~ 166 (484)
T PRK14956 87 GISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPE 166 (484)
T ss_pred cCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccH
Confidence 00000 000 000111122222222211 2456669999999888878888888887654445565555544 3332
Q ss_pred HhcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHH
Q 046770 347 LIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALG 407 (475)
Q Consensus 347 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 407 (475)
........|.+.+++.++...++.+.+...+. .-..+....|++.++|.+--+..+.
T Consensus 167 TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi----~~e~eAL~~Ia~~S~Gd~RdAL~lL 223 (484)
T PRK14956 167 TILSRCQDFIFKKVPLSVLQDYSEKLCKIENV----QYDQEGLFWIAKKGDGSVRDMLSFM 223 (484)
T ss_pred HHHhhhheeeecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCChHHHHHHHH
Confidence 23334467999999999999988877643321 1124567789999999986554444
No 39
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.62 E-value=1e-06 Score=90.68 Aligned_cols=183 Identities=16% Similarity=0.132 Sum_probs=110.5
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCccccc-------------------CcC
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQC-------------------HFD 255 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~ 255 (475)
.+++|-+.-++.|...+.. . .-...+.++|+.|+||||+|+.+++...-.. .|.
T Consensus 16 ~diiGq~~~v~~L~~~i~~-~------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~ 88 (546)
T PRK14957 16 AEVAGQQHALNSLVHALET-Q------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFI 88 (546)
T ss_pred HHhcCcHHHHHHHHHHHHc-C------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCC
Confidence 3688999999999988866 2 2234578999999999999999976321000 111
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHH-hCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCc
Q 046770 256 LKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQ-LFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGS 334 (475)
Q Consensus 256 ~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 334 (475)
..+++.......+. +...+...+... ..+++-++|+||++..+...+..++..+......+
T Consensus 89 dlieidaas~~gvd------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v 150 (546)
T PRK14957 89 DLIEIDAASRTGVE------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYV 150 (546)
T ss_pred ceEEeecccccCHH------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCc
Confidence 12222211111111 111222222211 23566799999998877777888888877655566
Q ss_pred EEEEecCC-hHHH-HhcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchH-HHHHH
Q 046770 335 KIIITTRN-ADAA-LIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPL-AAKAL 406 (475)
Q Consensus 335 ~ilvTtR~-~~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL-ai~~~ 406 (475)
.+|++|.+ ..+. ........+++++++.++....+.+.+...+. .........|++.++|.+- |+..+
T Consensus 151 ~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi----~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 151 KFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI----NSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred eEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 66554443 3333 22334578999999999998888865433221 1124556679999999765 44443
No 40
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.61 E-value=1.1e-06 Score=92.89 Aligned_cols=202 Identities=19% Similarity=0.193 Sum_probs=119.8
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCc---CeEEEEEecCC---CCHH
Q 046770 196 KVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHF---DLKAWTYVSQD---FDII 269 (475)
Q Consensus 196 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~v~~~---~~~~ 269 (475)
.++|++..+..+...+.. .....+.|+|++|+||||||+.+++.......+ ....|+.+... .+..
T Consensus 155 ~iiGqs~~~~~l~~~ia~--------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~ 226 (615)
T TIGR02903 155 EIVGQERAIKALLAKVAS--------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPR 226 (615)
T ss_pred hceeCcHHHHHHHHHHhc--------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHH
Confidence 588999999988877754 234578999999999999999998754333322 12345544321 1222
Q ss_pred HHHHHH---------------HHHhhcCC----------------CCCCC-hHHHHHHHHHHhCCceEEEEEECCCCCCh
Q 046770 270 RVTKSI---------------LRSVAMGI----------------VDHND-LNLLQWKLKKQLFGKRFLLVLDDVWNENY 317 (475)
Q Consensus 270 ~~l~~i---------------l~~l~~~~----------------~~~~~-~~~l~~~l~~~l~~kr~LlVlDdv~~~~~ 317 (475)
.+...+ +...+... +.... ....+..|.+.++.++++++-|+.|..+.
T Consensus 227 ~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~ 306 (615)
T TIGR02903 227 EVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDP 306 (615)
T ss_pred HHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCc
Confidence 221111 11111000 00111 12356778888888888888887777666
Q ss_pred hhHhHhhCcCCCCCCCcEEEE--ecCChHH-H-HhcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHH
Q 046770 318 NDWIDLSRPFQDGAPGSKIII--TTRNADA-A-LIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIV 393 (475)
Q Consensus 318 ~~~~~l~~~l~~~~~gs~ilv--TtR~~~v-~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~ 393 (475)
..|..+...+....+...+++ ||++... . ........+.+.+++.++.+.++.+.+..... .. ..++...|.
T Consensus 307 ~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v-~l---s~eal~~L~ 382 (615)
T TIGR02903 307 NVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV-HL---AAGVEELIA 382 (615)
T ss_pred ccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHH
Confidence 667777666665544444554 5664321 1 11123356789999999999999987643211 11 134556666
Q ss_pred HhcCCchHHHHHHHHH
Q 046770 394 IKCNGLPLAAKALGCL 409 (475)
Q Consensus 394 ~~c~G~PLai~~~~~~ 409 (475)
+.+..-+-++..++..
T Consensus 383 ~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 383 RYTIEGRKAVNILADV 398 (615)
T ss_pred HCCCcHHHHHHHHHHH
Confidence 6666657777766544
No 41
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.61 E-value=4.5e-07 Score=96.71 Aligned_cols=175 Identities=22% Similarity=0.242 Sum_probs=99.5
Q ss_pred ccccccchhHH---HHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHH
Q 046770 195 AKVYGRSKERE---EIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRV 271 (475)
Q Consensus 195 ~~~vGR~~e~~---~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~ 271 (475)
.+++|.+..+. .|...+.. .....+.|+|++|+||||||+.+++. ...+|. .++... ..+.
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~--------~~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~---~lna~~-~~i~-- 91 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA--------DRVGSLILYGPPGVGKTTLARIIANH--TRAHFS---SLNAVL-AGVK-- 91 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc--------CCCceEEEECCCCCCHHHHHHHHHHH--hcCcce---eehhhh-hhhH--
Confidence 35888887664 45555544 44567789999999999999999984 333331 111110 0000
Q ss_pred HHHHHHHhhcCCCCCCChHHHHHHHHHHh--CCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEE--ecCChH--H
Q 046770 272 TKSILRSVAMGIVDHNDLNLLQWKLKKQL--FGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIII--TTRNAD--A 345 (475)
Q Consensus 272 l~~il~~l~~~~~~~~~~~~l~~~l~~~l--~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~--v 345 (475)
+...........+ .+++.+|||||++..+...++.++..+. .++.+++ ||.++. +
T Consensus 92 ----------------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l 152 (725)
T PRK13341 92 ----------------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEV 152 (725)
T ss_pred ----------------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhh
Confidence 0111111121111 2467799999998766656666665443 2444554 344432 1
Q ss_pred H-HhcCCCceeeCCCCCHHHHHHHHhhcccCCC---CCCCCchHHHHHHHHHHhcCCchHHHH
Q 046770 346 A-LIMGTVQAYPLKGLSNDDCMCLFTQHSLETR---DFSMHQPLKEIGAKIVIKCNGLPLAAK 404 (475)
Q Consensus 346 ~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~---~~~~~~~~~~~~~~I~~~c~G~PLai~ 404 (475)
. ...+....+.+++|+.++...++.+.+-... ......-..+....|++.+.|..-.+.
T Consensus 153 ~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~ll 215 (725)
T PRK13341 153 NKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLL 215 (725)
T ss_pred hhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHH
Confidence 1 1222346799999999999999987653100 000111224566778888888754333
No 42
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.59 E-value=2.3e-06 Score=87.61 Aligned_cols=198 Identities=18% Similarity=0.173 Sum_probs=114.3
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcC-eEEEEEecCCCCHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFD-LKAWTYVSQDFDIIRVTK 273 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~l~ 273 (475)
.+++|-+.-+..|...+.. . .-...+.++|+.|+||||+|+.+++...-..... ...+..+.... ...
T Consensus 21 ~dliGq~~vv~~L~~ai~~-~------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~----~C~ 89 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILN-D------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCT----NCI 89 (507)
T ss_pred HHhcCcHHHHHHHHHHHHc-C------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCCh----HHH
Confidence 3688988888888887765 2 2235788999999999999999987421111000 00000011100 001
Q ss_pred HHHHHhhc-----CCCCCCChHHHHHHHHHH----hCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEE-ecCCh
Q 046770 274 SILRSVAM-----GIVDHNDLNLLQWKLKKQ----LFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIII-TTRNA 343 (475)
Q Consensus 274 ~il~~l~~-----~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~ 343 (475)
.+...... ........+++...+... +.+++-++|||+++..+...|..++..+......+.+|+ ||+..
T Consensus 90 ~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~ 169 (507)
T PRK06645 90 SFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQ 169 (507)
T ss_pred HHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChH
Confidence 11000000 000111222222222221 245677999999988777788888887775555666655 44444
Q ss_pred HHHH-hcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHH
Q 046770 344 DAAL-IMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALG 407 (475)
Q Consensus 344 ~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 407 (475)
.+.. .......+++.+++.++...++.+.+...+. . -..+....|++.++|.+--+....
T Consensus 170 kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi-~---ie~eAL~~Ia~~s~GslR~al~~L 230 (507)
T PRK06645 170 KIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL-K---TDIEALRIIAYKSEGSARDAVSIL 230 (507)
T ss_pred HhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4433 2234467999999999999999987754322 1 123556679999999876554333
No 43
>PRK08727 hypothetical protein; Validated
Probab=98.59 E-value=1.3e-06 Score=81.21 Aligned_cols=153 Identities=16% Similarity=0.043 Sum_probs=90.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCce
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKR 304 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr 304 (475)
..+.|+|+.|+|||.|++.+++.. ........|++..+ ....+. ..+.. + .+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~--~~~~~~~~y~~~~~------~~~~~~-----------------~~~~~-l-~~~ 94 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAA--EQAGRSSAYLPLQA------AAGRLR-----------------DALEA-L-EGR 94 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEeHHH------hhhhHH-----------------HHHHH-H-hcC
Confidence 458999999999999999998743 22223445665332 111111 11111 1 123
Q ss_pred EEEEEECCCCCC-hhhHhH-hhCcCCC-CCCCcEEEEecCCh---------HHHHhcCCCceeeCCCCCHHHHHHHHhhc
Q 046770 305 FLLVLDDVWNEN-YNDWID-LSRPFQD-GAPGSKIIITTRNA---------DAALIMGTVQAYPLKGLSNDDCMCLFTQH 372 (475)
Q Consensus 305 ~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 372 (475)
-+|||||+.... ...|.. +...+.. ...+..+|+|++.. ++...+.....+++++++.++...++.++
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 589999996432 122332 2222221 12466799999852 22223334568999999999999999987
Q ss_pred ccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHH
Q 046770 373 SLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGC 408 (475)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~ 408 (475)
+....- .-..+....|++.|.|..-.+..+-.
T Consensus 175 a~~~~l----~l~~e~~~~La~~~~rd~r~~l~~L~ 206 (233)
T PRK08727 175 AQRRGL----ALDEAAIDWLLTHGERELAGLVALLD 206 (233)
T ss_pred HHHcCC----CCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 654221 12246667788899877766644333
No 44
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=1.6e-06 Score=88.11 Aligned_cols=184 Identities=16% Similarity=0.159 Sum_probs=112.8
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCcc-EEEEEEccCCCcHHHHHHHHHcCccc--c-----------------cCc
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHF-SVVSIIGMGGLGKTTLAQLVYNDSRV--Q-----------------CHF 254 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~--~-----------------~~F 254 (475)
.+++|-+.-++.|.+.+.. +++ ..+.++|+.|+||||+|+.++....- . ..+
T Consensus 13 ~dliGQe~vv~~L~~a~~~--------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~ 84 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTL--------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNH 84 (491)
T ss_pred HHhcCcHHHHHHHHHHHHc--------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCC
Confidence 4689988888888888765 233 36889999999999999988752100 0 011
Q ss_pred CeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCc
Q 046770 255 DLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGS 334 (475)
Q Consensus 255 ~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 334 (475)
.-++.++.+....+.+ .+.+++..... -+.++.-++|+|+++..+......++..+..-...+
T Consensus 85 ~Dv~eidaas~~~vdd-IR~Iie~~~~~----------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v 147 (491)
T PRK14964 85 PDVIEIDAASNTSVDD-IKVILENSCYL----------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHV 147 (491)
T ss_pred CCEEEEecccCCCHHH-HHHHHHHHHhc----------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCe
Confidence 1122232222222222 12222221110 013455689999998777667778887777555566
Q ss_pred EEEEecCC-hHHHH-hcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHH
Q 046770 335 KIIITTRN-ADAAL-IMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALG 407 (475)
Q Consensus 335 ~ilvTtR~-~~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 407 (475)
.+|++|.. ..+.. .......+.+++++.++....+.+.+...+. .-..+....|++.++|.+-.+....
T Consensus 148 ~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi----~i~~eAL~lIa~~s~GslR~alslL 218 (491)
T PRK14964 148 KFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI----EHDEESLKLIAENSSGSMRNALFLL 218 (491)
T ss_pred EEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 66666543 34332 2334577999999999999999887654322 1124556779999999886554433
No 45
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.59 E-value=9.3e-07 Score=92.25 Aligned_cols=195 Identities=12% Similarity=0.124 Sum_probs=111.1
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKS 274 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~ 274 (475)
.+++|.+.-++.|..++.. . .-...+.++|+.|+||||+|+.+.+...-..... +..+... .....
T Consensus 16 ddIIGQe~vv~~L~~ai~~-~------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~---~~pCg~C----~sCr~ 81 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDE-G------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQH---GEPCGVC----QSCTQ 81 (709)
T ss_pred HHHcCcHHHHHHHHHHHHc-C------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC---CCCCccc----HHHHH
Confidence 4699999999999999876 2 2235678999999999999999876321111000 0000000 00000
Q ss_pred HHHH-----hhcCCCCCCChHHHHHHHHHH----hCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCCh-H
Q 046770 275 ILRS-----VAMGIVDHNDLNLLQWKLKKQ----LFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNA-D 344 (475)
Q Consensus 275 il~~-----l~~~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~ 344 (475)
+... +..........+.+...+... ..+++-++|||++...+......++..+..-...+.+|++|.+. .
T Consensus 82 i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~k 161 (709)
T PRK08691 82 IDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHK 161 (709)
T ss_pred HhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccc
Confidence 0000 000000111122222222111 13556689999998766556666777665444456677666542 2
Q ss_pred HH-HhcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHH
Q 046770 345 AA-LIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALG 407 (475)
Q Consensus 345 v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 407 (475)
+. ...+....+.+.+++.++....+.+.+-..+. .-..+....|++.++|.+.-+..+.
T Consensus 162 L~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi----~id~eAL~~Ia~~A~GslRdAlnLL 221 (709)
T PRK08691 162 VPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI----AYEPPALQLLGRAAAGSMRDALSLL 221 (709)
T ss_pred cchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHHhCCCHHHHHHHH
Confidence 21 12223356888999999999999876643321 1124567789999999986655444
No 46
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.58 E-value=2.5e-06 Score=84.77 Aligned_cols=186 Identities=16% Similarity=0.155 Sum_probs=111.5
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccc--------------------cCc
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQ--------------------CHF 254 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------------------~~F 254 (475)
.+++|.+..++.|.+++.. . .-...+.++|++|+||||+|+.+.....-. .++
T Consensus 14 ~~iig~~~~~~~l~~~~~~-~------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~ 86 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKN-G------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSL 86 (355)
T ss_pred hhccCcHHHHHHHHHHHHc-C------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 3689999999999998865 2 223567899999999999998887532100 122
Q ss_pred CeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCc
Q 046770 255 DLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGS 334 (475)
Q Consensus 255 ~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 334 (475)
+. .++.-...... +.++.++..+... -..+++-++|+|++...+......++..+......+
T Consensus 87 ~~-~~~~~~~~~~~-~~~~~l~~~~~~~----------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~ 148 (355)
T TIGR02397 87 DV-IEIDAASNNGV-DDIREILDNVKYA----------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHV 148 (355)
T ss_pred CE-EEeeccccCCH-HHHHHHHHHHhcC----------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccce
Confidence 21 12211111111 1112222221110 012445588999997665556667777765444566
Q ss_pred EEEEecCChH-HH-HhcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHHH
Q 046770 335 KIIITTRNAD-AA-LIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCL 409 (475)
Q Consensus 335 ~ilvTtR~~~-v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~ 409 (475)
.+|++|.+.. +. ........+++.+++.++...++...+-..+. .. ..+.+..|++.++|.|..+......
T Consensus 149 ~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~-~i---~~~a~~~l~~~~~g~~~~a~~~lek 221 (355)
T TIGR02397 149 VFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI-KI---EDEALELIARAADGSLRDALSLLDQ 221 (355)
T ss_pred eEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCChHHHHHHHHH
Confidence 7677765543 22 22233467889999999999988876543221 11 2466777999999999766655443
No 47
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=1.1e-06 Score=86.22 Aligned_cols=198 Identities=14% Similarity=0.149 Sum_probs=115.4
Q ss_pred ccccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCccccc--CcCeEEEEEecCCCCHHH
Q 046770 193 HEAKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQC--HFDLKAWTYVSQDFDIIR 270 (475)
Q Consensus 193 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~--~F~~~~wv~v~~~~~~~~ 270 (475)
.-..++|-+...+.+...+.. . .-...+.|+|+.|+||||+|..+.+..--.. .+.... ...+.....
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~-g------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~ 90 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYRE-G------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASP 90 (351)
T ss_pred chhhccCcHHHHHHHHHHHHc-C------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCH
Confidence 345689999999999998876 2 2234688999999999999998876321100 011110 011111111
Q ss_pred HHHHHHHH-------hhcCC-------CCCCChHHHHHHHHHHh-----CCceEEEEEECCCCCChhhHhHhhCcCCCCC
Q 046770 271 VTKSILRS-------VAMGI-------VDHNDLNLLQWKLKKQL-----FGKRFLLVLDDVWNENYNDWIDLSRPFQDGA 331 (475)
Q Consensus 271 ~l~~il~~-------l~~~~-------~~~~~~~~l~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~ 331 (475)
..+.+... +.... ...-..+++ +.+.+++ .+++-++|+|+++..+......++..+....
T Consensus 91 ~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp 169 (351)
T PRK09112 91 VWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPP 169 (351)
T ss_pred HHHHHHcCCCCCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCC
Confidence 22222211 00000 011122332 3344444 3566799999998887777777777776444
Q ss_pred CCcEEEEecCCh-HHH-HhcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHH
Q 046770 332 PGSKIIITTRNA-DAA-LIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALG 407 (475)
Q Consensus 332 ~gs~ilvTtR~~-~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 407 (475)
..+.+|++|..+ .+. ...+....+++.+++.++...++.+..... . ...+....|++.++|.|.....+.
T Consensus 170 ~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~---~---~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 170 ARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ---G---SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc---C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 445544444433 222 222334689999999999999998743211 1 113446679999999999766544
No 48
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.58 E-value=2.6e-06 Score=76.48 Aligned_cols=91 Identities=18% Similarity=0.246 Sum_probs=64.4
Q ss_pred CceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCCh-HHHH-hcCCCceeeCCCCCHHHHHHHHhhcccCCCCC
Q 046770 302 GKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNA-DAAL-IMGTVQAYPLKGLSNDDCMCLFTQHSLETRDF 379 (475)
Q Consensus 302 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 379 (475)
+.+-++|+||+...+...+..++..+......+.+|++|++. .+.. .......+++.+++.++..+++.+..
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~g------ 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQG------ 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHcC------
Confidence 456689999998776667777887776555566677766653 2211 12234689999999999999998771
Q ss_pred CCCchHHHHHHHHHHhcCCchHH
Q 046770 380 SMHQPLKEIGAKIVIKCNGLPLA 402 (475)
Q Consensus 380 ~~~~~~~~~~~~I~~~c~G~PLa 402 (475)
. . .+.+..|++.++|.|..
T Consensus 169 i-~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 169 I-S---EEAAELLLALAGGSPGA 187 (188)
T ss_pred C-C---HHHHHHHHHHcCCCccc
Confidence 1 1 35677899999998863
No 49
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.58 E-value=1.1e-06 Score=91.84 Aligned_cols=194 Identities=14% Similarity=0.137 Sum_probs=113.4
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCcc-EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHF-SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTK 273 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~ 273 (475)
.+++|-+.-++.|...+.. +++ ..+.++|+.|+||||+|+.+++...-...+. ..++..-...+
T Consensus 16 ~divGQe~vv~~L~~~l~~--------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~ 80 (647)
T PRK07994 16 AEVVGQEHVLTALANALDL--------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCR 80 (647)
T ss_pred HHhcCcHHHHHHHHHHHHc--------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHH
Confidence 4689999989988888866 233 4468999999999999999977421110000 00111111111
Q ss_pred HHHHHhh-----cCCCCCCChHHHHHHHHH---H-hCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCC-h
Q 046770 274 SILRSVA-----MGIVDHNDLNLLQWKLKK---Q-LFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRN-A 343 (475)
Q Consensus 274 ~il~~l~-----~~~~~~~~~~~l~~~l~~---~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~ 343 (475)
.|...-. .........++....+.. . ..++.-++|||+++..+......++..+..-...+++|++|.+ .
T Consensus 81 ~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~ 160 (647)
T PRK07994 81 EIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (647)
T ss_pred HHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCcc
Confidence 1111000 000001122222221111 1 2466679999999888877888888877655456666555554 3
Q ss_pred HHH-HhcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHH
Q 046770 344 DAA-LIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALG 407 (475)
Q Consensus 344 ~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 407 (475)
.+. ...+....+++++++.++...++.+.+-..+. ....+....|++.++|.+--+..+.
T Consensus 161 kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i----~~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 161 KLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQI----PFEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred ccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 332 22334578999999999999999876532211 1123556679999999887554443
No 50
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=2.1e-06 Score=89.66 Aligned_cols=197 Identities=12% Similarity=0.162 Sum_probs=112.8
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccC--cCeEEEEEecCCCCHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCH--FDLKAWTYVSQDFDIIRVT 272 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~--F~~~~wv~v~~~~~~~~~l 272 (475)
.+++|-+.-++.|.+++.. . .-...+.++|+.|+||||+|+.+.+...-... ...... .+++.-...
T Consensus 16 ~dviGQe~vv~~L~~~l~~-~------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C 84 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQ-Q------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQAC 84 (618)
T ss_pred HHhcCcHHHHHHHHHHHHc-C------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHH
Confidence 3688988888888888876 2 22356689999999999999998653210000 000000 011111111
Q ss_pred HHHHHHh-----hcCCCCCCChHHHHHHHHHH----hCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCC-
Q 046770 273 KSILRSV-----AMGIVDHNDLNLLQWKLKKQ----LFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRN- 342 (475)
Q Consensus 273 ~~il~~l-----~~~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~- 342 (475)
..|-..- ..........++..+.+... ..++.-++|||+++..+...+..++..+..-...+.+|++|.+
T Consensus 85 ~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~ 164 (618)
T PRK14951 85 RDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDP 164 (618)
T ss_pred HHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCc
Confidence 1110000 00000111222222222211 1244558999999988877888888887765556666665543
Q ss_pred hHHH-HhcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHH
Q 046770 343 ADAA-LIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKAL 406 (475)
Q Consensus 343 ~~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 406 (475)
..+. ........+++++++.++....+.+.+...+. . ...+....|++.++|.+--+..+
T Consensus 165 ~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi-~---ie~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 165 QKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV-P---AEPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred hhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 3332 23334578999999999999999876643321 1 12356677899999987655544
No 51
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=2.5e-06 Score=84.24 Aligned_cols=198 Identities=13% Similarity=0.050 Sum_probs=113.8
Q ss_pred cccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEE---EEecCCCCHHH
Q 046770 194 EAKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAW---TYVSQDFDIIR 270 (475)
Q Consensus 194 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~w---v~v~~~~~~~~ 270 (475)
-.+++|.+.-++.|.+.+.. . .-...+.++|+.|+||+|+|..+.+..--......... .........-.
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~-~------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~ 90 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRS-G------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHP 90 (365)
T ss_pred hhhccChHHHHHHHHHHHHc-C------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCCh
Confidence 34789999989999998876 2 22345889999999999999877653210000000000 00000000001
Q ss_pred HHHHHHHHhhc----------CC----CCCCChHHHHHHHHHHh-----CCceEEEEEECCCCCChhhHhHhhCcCCCCC
Q 046770 271 VTKSILRSVAM----------GI----VDHNDLNLLQWKLKKQL-----FGKRFLLVLDDVWNENYNDWIDLSRPFQDGA 331 (475)
Q Consensus 271 ~l~~il~~l~~----------~~----~~~~~~~~l~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~ 331 (475)
..+.+...-.. .. ...-..++ ++.+.+.+ .+.+-++||||++..+......++..+..-.
T Consensus 91 ~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp 169 (365)
T PRK07471 91 VARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPP 169 (365)
T ss_pred HHHHHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCC
Confidence 11111100000 00 01112233 33344443 2556799999998888777888887776555
Q ss_pred CCcEEEEecCChH-HH-HhcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHH
Q 046770 332 PGSKIIITTRNAD-AA-LIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALG 407 (475)
Q Consensus 332 ~gs~ilvTtR~~~-v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 407 (475)
.++.+|++|.... +. ...+....+.+.+++.++..+++.+..... . ......++..++|.|+.+..+.
T Consensus 170 ~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~-----~---~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 170 ARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL-----P---DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC-----C---HHHHHHHHHHcCCCHHHHHHHh
Confidence 5666777776643 22 223345789999999999999998764211 1 1222568999999999665543
No 52
>PRK04195 replication factor C large subunit; Provisional
Probab=98.55 E-value=1.6e-06 Score=89.57 Aligned_cols=187 Identities=18% Similarity=0.142 Sum_probs=112.5
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKS 274 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~ 274 (475)
.+++|.++.++.|.+|+.....+ ...+.+.|+|++|+||||+|+.++++. .|+. +-++.++..+ ...+..
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g----~~~~~lLL~GppG~GKTtla~ala~el----~~~~-ielnasd~r~-~~~i~~ 83 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKG----KPKKALLLYGPPGVGKTSLAHALANDY----GWEV-IELNASDQRT-ADVIER 83 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcC----CCCCeEEEECCCCCCHHHHHHHHHHHc----CCCE-EEEccccccc-HHHHHH
Confidence 46999999999999998752211 225789999999999999999999853 1322 2233333222 223333
Q ss_pred HHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCCh----hhHhHhhCcCCCCCCCcEEEEecCCh-HHH--H
Q 046770 275 ILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENY----NDWIDLSRPFQDGAPGSKIIITTRNA-DAA--L 347 (475)
Q Consensus 275 il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~----~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~--~ 347 (475)
++....... .....++-+||||+++.... ..+..+...+.. .+..||+|+... ... .
T Consensus 84 ~i~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~ 147 (482)
T PRK04195 84 VAGEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRE 147 (482)
T ss_pred HHHHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhh
Confidence 333221110 00113577999999975432 234445444432 334566666542 111 1
Q ss_pred hcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHhc
Q 046770 348 IMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCLLH 411 (475)
Q Consensus 348 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~ 411 (475)
.......+.+.+++.++....+.+.+...+. ..+ .+....|++.++|..-.+......+.
T Consensus 148 Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi-~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~a 207 (482)
T PRK04195 148 LRNACLMIEFKRLSTRSIVPVLKRICRKEGI-ECD---DEALKEIAERSGGDLRSAINDLQAIA 207 (482)
T ss_pred HhccceEEEecCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 2223467899999999999988877644322 122 45677899999998776665444443
No 53
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.54 E-value=3.6e-06 Score=83.80 Aligned_cols=191 Identities=11% Similarity=0.067 Sum_probs=106.3
Q ss_pred cccccchhHHHHHHHHhcCCCCC---CCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHH
Q 046770 196 KVYGRSKEREEIVELLLKEDGTS---HNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVT 272 (475)
Q Consensus 196 ~~vGR~~e~~~l~~~L~~~~~~~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l 272 (475)
+++|-+.-++.|.+++.. +... ....-...+.++|+.|+|||++|..+++..--... . +.++... ...
T Consensus 6 ~IiGq~~~~~~L~~~i~~-~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~--~--~~~Cg~C----~~C 76 (394)
T PRK07940 6 DLVGQEAVVAELRAAARA-ARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDP--D--EPGCGEC----RAC 76 (394)
T ss_pred hccChHHHHHHHHHHHHh-ccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCC--C--CCCCCCC----HHH
Confidence 588988888889988876 2100 00012456889999999999999988652110000 0 0000000 000
Q ss_pred HHHHHHhhcC------CCCCCChHHHHHHHHHHh-----CCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecC
Q 046770 273 KSILRSVAMG------IVDHNDLNLLQWKLKKQL-----FGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTR 341 (475)
Q Consensus 273 ~~il~~l~~~------~~~~~~~~~l~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR 341 (475)
..+...-... .......+++. .+.+.+ .+++-++|||+++..+......++..+.....++.+|++|.
T Consensus 77 ~~~~~~~hpD~~~i~~~~~~i~i~~iR-~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~ 155 (394)
T PRK07940 77 RTVLAGTHPDVRVVAPEGLSIGVDEVR-ELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAP 155 (394)
T ss_pred HHHhcCCCCCEEEeccccccCCHHHHH-HHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEEC
Confidence 0000000000 00011112211 122221 24555888899988776666777777765455666666665
Q ss_pred C-hHHH-HhcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHH
Q 046770 342 N-ADAA-LIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKA 405 (475)
Q Consensus 342 ~-~~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~ 405 (475)
+ ..+. ...+....+.+.+++.++..+.+.+... .. .+.+..++..++|.|.....
T Consensus 156 ~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~------~~---~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 156 SPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG------VD---PETARRAARASQGHIGRARR 212 (394)
T ss_pred ChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC------CC---HHHHHHHHHHcCCCHHHHHH
Confidence 5 3333 2233457899999999999988874321 11 24466789999999975543
No 54
>PRK09087 hypothetical protein; Validated
Probab=98.54 E-value=3.1e-06 Score=78.09 Aligned_cols=145 Identities=14% Similarity=0.092 Sum_probs=90.5
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCc
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGK 303 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 303 (475)
.+.+.|+|+.|+|||+|++.+++... ..+++.. .+...++..+ .+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~~~---------------------~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAANAA---------------------AE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHHhh---------------------hc-
Confidence 35789999999999999999887421 1133221 1111111111 11
Q ss_pred eEEEEEECCCCC--ChhhHhHhhCcCCCCCCCcEEEEecCC---------hHHHHhcCCCceeeCCCCCHHHHHHHHhhc
Q 046770 304 RFLLVLDDVWNE--NYNDWIDLSRPFQDGAPGSKIIITTRN---------ADAALIMGTVQAYPLKGLSNDDCMCLFTQH 372 (475)
Q Consensus 304 r~LlVlDdv~~~--~~~~~~~l~~~l~~~~~gs~ilvTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 372 (475)
-+|+|||+... +...+-.+...+. ..|..+|+|++. ++....+....++++++++.++-..++.+.
T Consensus 89 -~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 89 -GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred -CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 27888999543 2223333333332 236778988874 333444456688999999999999999988
Q ss_pred ccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHh
Q 046770 373 SLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCLL 410 (475)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L 410 (475)
+....- . -.+++..-|++.+.|..-++..+...|
T Consensus 166 ~~~~~~-~---l~~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 166 FADRQL-Y---VDPHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred HHHcCC-C---CCHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 744221 1 225677788999988888777544444
No 55
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=2.8e-06 Score=86.60 Aligned_cols=209 Identities=17% Similarity=0.212 Sum_probs=112.9
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCcc-EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHF-SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTK 273 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~ 273 (475)
.+++|.+.-...|...+.. +.+ ..+.++|++|+||||+|+.+++...-..... ..+...-....
T Consensus 14 ~divGq~~i~~~L~~~i~~--------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~-------~~pc~~c~~c~ 78 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKK--------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKG-------VEPCNECRACR 78 (472)
T ss_pred HHccCcHHHHHHHHHHHHc--------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-------CCCCcccHHHH
Confidence 4689988877777777765 233 4578999999999999999977421110000 00000000000
Q ss_pred HHHHHh-----hcCCCCCCChHHHHHHHHHH-----hCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCC-
Q 046770 274 SILRSV-----AMGIVDHNDLNLLQWKLKKQ-----LFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRN- 342 (475)
Q Consensus 274 ~il~~l-----~~~~~~~~~~~~l~~~l~~~-----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~- 342 (475)
.+...- ..........+.+. .+.+. ..+++-++|+|+++.........++..+......+.+|++|.+
T Consensus 79 ~i~~g~~~dv~el~aa~~~gid~iR-~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~ 157 (472)
T PRK14962 79 SIDEGTFMDVIELDAASNRGIDEIR-KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNL 157 (472)
T ss_pred HHhcCCCCccEEEeCcccCCHHHHH-HHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCCh
Confidence 000000 00000011111111 12221 2355679999999766555566676666543344555544443
Q ss_pred hHHHH-hcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCC-chHHHHHHHHHhcC---CCChh
Q 046770 343 ADAAL-IMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNG-LPLAAKALGCLLHG---KYDPS 417 (475)
Q Consensus 343 ~~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G-~PLai~~~~~~L~~---~~~~~ 417 (475)
..+.. .......+.+.+++.++....+.+.+...+- . -..+....|++.++| ++.++..+-.+... +-+.+
T Consensus 158 ~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi-~---i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~~It~e 233 (472)
T PRK14962 158 EKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI-E---IDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLE 233 (472)
T ss_pred HhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHH
Confidence 33322 2234578999999999999988877643221 1 124556778887765 46677666554322 23455
Q ss_pred HHHHHH
Q 046770 418 DWESVL 423 (475)
Q Consensus 418 ~w~~~l 423 (475)
....++
T Consensus 234 ~V~~~l 239 (472)
T PRK14962 234 TVHEAL 239 (472)
T ss_pred HHHHHH
Confidence 555544
No 56
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=2.2e-06 Score=88.22 Aligned_cols=185 Identities=14% Similarity=0.135 Sum_probs=110.5
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccC-------------------cC
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCH-------------------FD 255 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-------------------F~ 255 (475)
.+++|-+.-++.|.+++.. . .-...+.++|+.|+||||+|+.+.+...-... |.
T Consensus 16 ~divGq~~v~~~L~~~~~~-~------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~ 88 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQ-Q------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFP 88 (509)
T ss_pred HHhcCCHHHHHHHHHHHHh-C------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCc
Confidence 3689999999999999976 2 12235689999999999999988763211111 11
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcE
Q 046770 256 LKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSK 335 (475)
Q Consensus 256 ~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 335 (475)
-.+.+.......+.+ ++.++..+... -..++.-++|||+++..+......++..+..-...+.
T Consensus 89 d~~eidaas~~~v~~-iR~l~~~~~~~----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~ 151 (509)
T PRK14958 89 DLFEVDAASRTKVED-TRELLDNIPYA----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVK 151 (509)
T ss_pred eEEEEcccccCCHHH-HHHHHHHHhhc----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeE
Confidence 112222111111111 11222211110 1135566899999988777778878777765555677
Q ss_pred EEEecCCh-HHH-HhcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHH
Q 046770 336 IIITTRNA-DAA-LIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALG 407 (475)
Q Consensus 336 ilvTtR~~-~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 407 (475)
+|++|.+. .+. ...+....+++++++.++....+.+.+-..+. .. ..+....|++.++|.+.-+..+.
T Consensus 152 fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi-~~---~~~al~~ia~~s~GslR~al~lL 221 (509)
T PRK14958 152 FILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV-EF---ENAALDLLARAANGSVRDALSLL 221 (509)
T ss_pred EEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCcHHHHHHHH
Confidence 76665442 222 22233467889999999988777665533221 11 23456678999999886555443
No 57
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.50 E-value=2e-07 Score=86.76 Aligned_cols=88 Identities=20% Similarity=0.215 Sum_probs=62.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCC--CCHHHHHHHHHHHhhcCCCCCCChH------HHHHHH
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQD--FDIIRVTKSILRSVAMGIVDHNDLN------LLQWKL 296 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~--~~~~~~l~~il~~l~~~~~~~~~~~------~l~~~l 296 (475)
..+.|+|++|+|||||++.++++.... +|+...|+.+... +++.++++.+...+-....+..... ......
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a 95 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKA 95 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 478999999999999999999976544 8999999997766 7899999888444333222222111 112222
Q ss_pred HHH-hCCceEEEEEECCC
Q 046770 297 KKQ-LFGKRFLLVLDDVW 313 (475)
Q Consensus 297 ~~~-l~~kr~LlVlDdv~ 313 (475)
..+ -.|++.++++|++.
T Consensus 96 ~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 96 KRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHCCCCEEEEEECHH
Confidence 222 25899999999994
No 58
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=1.5e-06 Score=87.43 Aligned_cols=200 Identities=14% Similarity=0.152 Sum_probs=111.2
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCcc-EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEE-ecCCCCHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHF-SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTY-VSQDFDIIRVT 272 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~-v~~~~~~~~~l 272 (475)
.+++|.+.-++.|..++.+ +++ ..+.++|+.|+||||+|..+++...-........|.. +..+...-...
T Consensus 16 ~eiiGq~~~~~~L~~~~~~--------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c 87 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRM--------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESC 87 (397)
T ss_pred hhccChHHHHHHHHHHHHh--------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHH
Confidence 3688988888888888866 333 3477999999999999999876321111010000000 00011100111
Q ss_pred HHHHHHhhcC-----CCCCCChHHHHHHHHHHh-----CCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEec-C
Q 046770 273 KSILRSVAMG-----IVDHNDLNLLQWKLKKQL-----FGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITT-R 341 (475)
Q Consensus 273 ~~il~~l~~~-----~~~~~~~~~l~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R 341 (475)
+.+....... .......+++.+ +.+.+ .+.+-++|+|+++..+...+..++..+......+.+|++| +
T Consensus 88 ~~~~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~ 166 (397)
T PRK14955 88 RDFDAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTE 166 (397)
T ss_pred HHHhcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 1111100000 001111233322 22222 3455688999998776667888887776555566666555 4
Q ss_pred ChHHHH-hcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHH
Q 046770 342 NADAAL-IMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALG 407 (475)
Q Consensus 342 ~~~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 407 (475)
...+.. .......+++.+++.++....+...+-..+. .-..+.+..|++.++|.+--+....
T Consensus 167 ~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~----~i~~~al~~l~~~s~g~lr~a~~~L 229 (397)
T PRK14955 167 LHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI----SVDADALQLIGRKAQGSMRDAQSIL 229 (397)
T ss_pred hHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 333332 1222357889999999998888876532211 1224667789999999886554433
No 59
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.46 E-value=4.2e-06 Score=90.52 Aligned_cols=193 Identities=11% Similarity=0.093 Sum_probs=111.3
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKS 274 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~ 274 (475)
.+++|.+..++.|..++.. . .-...+.++|+.|+||||+|+.+.+...-....... .|..+ ...+.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~-~------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~---pCg~C----~sC~~ 80 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDS-G------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTST---PCGEC----DSCVA 80 (824)
T ss_pred HHhcCcHHHHHHHHHHHHh-C------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCC---CCccc----HHHHH
Confidence 3689999989999998876 2 122457899999999999999987642111100000 00000 00111
Q ss_pred HHHH-------hhcCCCCCCChHHHHHHHHHH-----hCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCC
Q 046770 275 ILRS-------VAMGIVDHNDLNLLQWKLKKQ-----LFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRN 342 (475)
Q Consensus 275 il~~-------l~~~~~~~~~~~~l~~~l~~~-----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 342 (475)
|... +..........+++.. |++. ..++.-++|||+++..+...+..|+..+..-...+.+|++|.+
T Consensus 81 ~~~g~~~~~dv~eidaas~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~ 159 (824)
T PRK07764 81 LAPGGPGSLDVTEIDAASHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTE 159 (824)
T ss_pred HHcCCCCCCcEEEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 1000 0000001112222222 2221 2355568899999888877888888888765556666655543
Q ss_pred -hHHHH-hcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHH
Q 046770 343 -ADAAL-IMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKAL 406 (475)
Q Consensus 343 -~~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 406 (475)
..+.. +......|++.+++.++...++.+.+-..+. . ...+....|++.++|.+..+..+
T Consensus 160 ~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv-~---id~eal~lLa~~sgGdlR~Al~e 221 (824)
T PRK07764 160 PDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV-P---VEPGVLPLVIRAGGGSVRDSLSV 221 (824)
T ss_pred hhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 34432 3334578999999999998888775532221 1 12345567899999988544433
No 60
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.45 E-value=2.5e-06 Score=79.11 Aligned_cols=153 Identities=19% Similarity=0.128 Sum_probs=88.6
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCc
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGK 303 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 303 (475)
...+.|+|+.|+|||+||+.+++... .... ...+++...... . + ... ..
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~-~~~~-~~~~i~~~~~~~------~----~------------------~~~-~~ 90 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADAS-YGGR-NARYLDAASPLL------A----F------------------DFD-PE 90 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-hCCC-cEEEEehHHhHH------H----H------------------hhc-cc
Confidence 35788999999999999999988431 1111 234444333110 0 0 011 22
Q ss_pred eEEEEEECCCCCChhhHhHhhCcCCCC-CCCc-EEEEecCChHHH--------HhcCCCceeeCCCCCHHHHHHHHhhcc
Q 046770 304 RFLLVLDDVWNENYNDWIDLSRPFQDG-APGS-KIIITTRNADAA--------LIMGTVQAYPLKGLSNDDCMCLFTQHS 373 (475)
Q Consensus 304 r~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs-~ilvTtR~~~v~--------~~~~~~~~~~l~~L~~~~~~~lf~~~~ 373 (475)
.-+||+||+...+...-..+...+... ..+. .+|+|++..... ..+.....+++.++++++...++.+.+
T Consensus 91 ~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 91 AELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred CCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 347899999654322323343333211 2333 466776643221 122234678999999988777776543
Q ss_pred cCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHhc
Q 046770 374 LETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCLLH 411 (475)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~ 411 (475)
-... .. -.++....|++.+.|++..+..+...|.
T Consensus 171 ~~~~-v~---l~~~al~~L~~~~~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 171 AERG-LQ---LADEVPDYLLTHFRRDMPSLMALLDALD 204 (227)
T ss_pred HHcC-CC---CCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 2211 11 2246677788899999998887776653
No 61
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.45 E-value=4.6e-06 Score=86.23 Aligned_cols=194 Identities=15% Similarity=0.165 Sum_probs=108.4
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKS 274 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~ 274 (475)
.+++|.+.-++.|.+++.. . .-...+.++|+.|+||||+|+.+++... |.-|... .+.+.-...+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~-~------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~------C~~~~~~-~~Cg~C~sCr~ 81 (605)
T PRK05896 16 KQIIGQELIKKILVNAILN-N------KLTHAYIFSGPRGIGKTSIAKIFAKAIN------CLNPKDG-DCCNSCSVCES 81 (605)
T ss_pred HHhcCcHHHHHHHHHHHHc-C------CCCceEEEECCCCCCHHHHHHHHHHHhc------CCCCCCC-CCCcccHHHHH
Confidence 4689999999999998865 2 2234688999999999999999876321 1111110 01111111111
Q ss_pred HHHHhhcC-----CCCCCChHHHHHH---HHHH-hCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEec-CChH
Q 046770 275 ILRSVAMG-----IVDHNDLNLLQWK---LKKQ-LFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITT-RNAD 344 (475)
Q Consensus 275 il~~l~~~-----~~~~~~~~~l~~~---l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~ 344 (475)
+....... .......+++... +... ..+++-++|+|+++..+...+..++..+......+.+|++| ....
T Consensus 82 i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~K 161 (605)
T PRK05896 82 INTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQK 161 (605)
T ss_pred HHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHh
Confidence 11100000 0001112222111 1110 12334479999998776667777777776444455555544 4333
Q ss_pred HH-HhcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHH
Q 046770 345 AA-LIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKAL 406 (475)
Q Consensus 345 v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 406 (475)
+. ...+....+++.+++.++....+...+...+. .. ..+.+..|++.++|.+.-+..+
T Consensus 162 Ll~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi-~I---s~eal~~La~lS~GdlR~Alnl 220 (605)
T PRK05896 162 IPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKI-KI---EDNAIDKIADLADGSLRDGLSI 220 (605)
T ss_pred hhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCcHHHHHHH
Confidence 32 22334567999999999999888876533221 11 1345677999999976544333
No 62
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.45 E-value=3.6e-06 Score=78.30 Aligned_cols=155 Identities=12% Similarity=0.083 Sum_probs=92.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCce
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKR 304 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr 304 (475)
+.+.|+|+.|+|||+|++.+++... ..-..+.++++..... . .....+.+.+ -
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~--~~~~~v~y~~~~~~~~---~-----------------~~~~~~~~~~-----~ 98 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELS--QRGRAVGYVPLDKRAW---F-----------------VPEVLEGMEQ-----L 98 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEEHHHHhh---h-----------------hHHHHHHhhh-----C
Confidence 5789999999999999999987432 2222345555533110 0 0111111111 1
Q ss_pred EEEEEECCCCCC-hhhHhHh-hCcCCCC-CCC-cEEEEecCCh---------HHHHhcCCCceeeCCCCCHHHHHHHHhh
Q 046770 305 FLLVLDDVWNEN-YNDWIDL-SRPFQDG-APG-SKIIITTRNA---------DAALIMGTVQAYPLKGLSNDDCMCLFTQ 371 (475)
Q Consensus 305 ~LlVlDdv~~~~-~~~~~~l-~~~l~~~-~~g-s~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 371 (475)
-+|+|||+.... ...|... ...+... ..| .++|+||+.+ +....+....++++++++.++-.+++.+
T Consensus 99 dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~ 178 (235)
T PRK08084 99 SLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQL 178 (235)
T ss_pred CEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHH
Confidence 388999996532 1234432 2222211 123 4788988854 3333444567899999999999999987
Q ss_pred cccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHh
Q 046770 372 HSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCLL 410 (475)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L 410 (475)
++.... -.-.+++..-|++.+.|..-.+..+-..|
T Consensus 179 ~a~~~~----~~l~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 179 RARLRG----FELPEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred HHHHcC----CCCCHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 664322 12235677789999998877766655554
No 63
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=3.8e-06 Score=87.07 Aligned_cols=179 Identities=12% Similarity=0.132 Sum_probs=107.4
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccC-------------------cC
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCH-------------------FD 255 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-------------------F~ 255 (475)
.+++|-+.-++.|.+++.. . .-...+.++|+.|+||||+|+.+.....-... |.
T Consensus 16 ~divGq~~v~~~L~~~i~~-~------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~ 88 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQ-Q------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFV 88 (527)
T ss_pred HHhcCcHHHHHHHHHHHHc-C------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 3688999999999998876 2 12245679999999999999998763211100 11
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHH----hCCceEEEEEECCCCCChhhHhHhhCcCCCCC
Q 046770 256 LKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQ----LFGKRFLLVLDDVWNENYNDWIDLSRPFQDGA 331 (475)
Q Consensus 256 ~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~ 331 (475)
..+++.... ....+.+...+... ..+++-++|+|+++..+......++..+....
T Consensus 89 d~~ei~~~~---------------------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp 147 (527)
T PRK14969 89 DLIEVDAAS---------------------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPP 147 (527)
T ss_pred ceeEeeccc---------------------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCC
Confidence 111111111 11122222111111 13566699999998777666777777776544
Q ss_pred CCcEEEEecCC-hHHH-HhcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHH
Q 046770 332 PGSKIIITTRN-ADAA-LIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKA 405 (475)
Q Consensus 332 ~gs~ilvTtR~-~~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~ 405 (475)
..+.+|++|.+ ..+. ...+....+++++++.++....+.+.+...+. . ...+....|++.++|.+--+..
T Consensus 148 ~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi-~---~~~~al~~la~~s~Gslr~al~ 219 (527)
T PRK14969 148 EHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI-P---FDATALQLLARAAAGSMRDALS 219 (527)
T ss_pred CCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHH
Confidence 56666665544 2222 11222367899999999999888776533221 1 1235567789999998764433
No 64
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.43 E-value=6.6e-06 Score=86.10 Aligned_cols=198 Identities=13% Similarity=0.137 Sum_probs=114.1
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcC--eEEEEEecCCCCHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFD--LKAWTYVSQDFDIIRVT 272 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~v~~~~~~~~~l 272 (475)
.+++|.+..++.|.+++.. . .-...+.++|+.|+||||+|+.+++...-..... ...+-.+.. -.-.
T Consensus 24 ~dliGq~~~v~~L~~~~~~-g------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~----c~~C 92 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFET-G------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGV----GEHC 92 (598)
T ss_pred HHhcCcHHHHHHHHHHHHc-C------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcc----cHHH
Confidence 4689999999999998876 2 2234688999999999999999977421111000 000000010 0111
Q ss_pred HHHHHHhhcC-----CCCCCChHHHHHHHHHHh-----CCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEec-C
Q 046770 273 KSILRSVAMG-----IVDHNDLNLLQWKLKKQL-----FGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITT-R 341 (475)
Q Consensus 273 ~~il~~l~~~-----~~~~~~~~~l~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R 341 (475)
..|...-... .......+++.. +.+.+ .+++-++|+|+++..+......++..+..-...+.+|++| .
T Consensus 93 ~~i~~g~h~Dv~e~~a~s~~gvd~IRe-Iie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte 171 (598)
T PRK09111 93 QAIMEGRHVDVLEMDAASHTGVDDIRE-IIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTE 171 (598)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHH-HHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 1111110000 001112222222 21221 2445589999998777667777877776554566666555 3
Q ss_pred ChHHH-HhcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHH
Q 046770 342 NADAA-LIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGC 408 (475)
Q Consensus 342 ~~~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~ 408 (475)
...+. ...+....+.+.+++.++....+.+.+-..+. . -..+....|++.++|.+.-+.....
T Consensus 172 ~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi-~---i~~eAl~lIa~~a~Gdlr~al~~Ld 235 (598)
T PRK09111 172 IRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV-E---VEDEALALIARAAEGSVRDGLSLLD 235 (598)
T ss_pred hhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33332 22233467999999999999999876643321 1 1235667799999999876665443
No 65
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.42 E-value=1e-05 Score=76.11 Aligned_cols=201 Identities=17% Similarity=0.162 Sum_probs=121.5
Q ss_pred hhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCccccc----CcCeEEEEEecCCCCHHHHHHHHHH
Q 046770 202 KEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQC----HFDLKAWTYVSQDFDIIRVTKSILR 277 (475)
Q Consensus 202 ~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~l~~il~ 277 (475)
+-++.|.++|.. +.. ...+-+.|+|.+|+|||++++.+....-... .--.++.|.....++...++..||.
T Consensus 44 ~~L~~L~~Ll~~-P~~----~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~ 118 (302)
T PF05621_consen 44 EALDRLEELLEY-PKR----HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILE 118 (302)
T ss_pred HHHHHHHHHHhC-Ccc----cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHH
Confidence 345666666655 322 5567899999999999999999986432111 1114677788888999999999999
Q ss_pred HhhcCCCCCCChHHHHHHHHHHhCC-ceEEEEEECCCCC---ChhhHhHh---hCcCCCCCCCcEEEEecCChHHHH---
Q 046770 278 SVAMGIVDHNDLNLLQWKLKKQLFG-KRFLLVLDDVWNE---NYNDWIDL---SRPFQDGAPGSKIIITTRNADAAL--- 347 (475)
Q Consensus 278 ~l~~~~~~~~~~~~l~~~l~~~l~~-kr~LlVlDdv~~~---~~~~~~~l---~~~l~~~~~gs~ilvTtR~~~v~~--- 347 (475)
+++...........+.......++. +-=+||||++++. +...-..+ +..|.+.-.-+-|.+-|+...-+.
T Consensus 119 ~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D 198 (302)
T PF05621_consen 119 ALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTD 198 (302)
T ss_pred HhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccC
Confidence 9998876666666665555555533 2348899999652 11122223 333333333445666665422221
Q ss_pred --hcCCCceeeCCCCCHH-HHHHHHhhc--ccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHH
Q 046770 348 --IMGTVQAYPLKGLSND-DCMCLFTQH--SLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGC 408 (475)
Q Consensus 348 --~~~~~~~~~l~~L~~~-~~~~lf~~~--~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~ 408 (475)
..+.+..+.|.....+ +...|+... ...-...+ .-...+++..|...++|+.--+..+-.
T Consensus 199 ~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S-~l~~~~la~~i~~~s~G~iG~l~~ll~ 263 (302)
T PF05621_consen 199 PQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPS-NLASPELARRIHERSEGLIGELSRLLN 263 (302)
T ss_pred HHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHHHHcCCchHHHHHHHH
Confidence 1123456677776544 444454432 11212211 223468889999999999766554443
No 66
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.41 E-value=5.7e-07 Score=87.51 Aligned_cols=101 Identities=19% Similarity=0.218 Sum_probs=66.5
Q ss_pred HHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCC--CHHHHHHHHHHHhhcC
Q 046770 205 EEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDF--DIIRVTKSILRSVAMG 282 (475)
Q Consensus 205 ~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~--~~~~~l~~il~~l~~~ 282 (475)
-++++++.....+ .-..|+|++|+||||||+.+|++.... +|+..+||.+.+.. .+.++.+.++..+-..
T Consensus 157 ~rvID~l~PIGkG-------QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~s 228 (416)
T PRK09376 157 TRIIDLIAPIGKG-------QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVAS 228 (416)
T ss_pred eeeeeeecccccC-------ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEE
Confidence 3466766653221 357899999999999999999975544 89999999998887 7777777776433222
Q ss_pred CCCCCChHH------HHHHHHHH-hCCceEEEEEECCC
Q 046770 283 IVDHNDLNL------LQWKLKKQ-LFGKRFLLVLDDVW 313 (475)
Q Consensus 283 ~~~~~~~~~------l~~~l~~~-l~~kr~LlVlDdv~ 313 (475)
..+...... ....-..+ ..|+.+||++|++.
T Consensus 229 t~d~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 229 TFDEPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChH
Confidence 222221111 11111111 36899999999994
No 67
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.41 E-value=1e-05 Score=79.33 Aligned_cols=212 Identities=17% Similarity=0.093 Sum_probs=128.6
Q ss_pred ccccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHH
Q 046770 193 HEAKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVT 272 (475)
Q Consensus 193 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l 272 (475)
.+..+.||+.|++.+.+++...-+. .....+-|.|-+|.|||.+...++.+..-...=.+++++++..-.....++
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~----~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF 223 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLEL----NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIF 223 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhc----ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHH
Confidence 3567999999999999999763222 344678899999999999999999864322222356788777767788888
Q ss_pred HHHHHHhhcCCCCCCChHHHHHHHHHHhCCc--eEEEEEECCCCCChhhHhHhhCcCC-CCCCCcEEEEecCCh--HH--
Q 046770 273 KSILRSVAMGIVDHNDLNLLQWKLKKQLFGK--RFLLVLDDVWNENYNDWIDLSRPFQ-DGAPGSKIIITTRNA--DA-- 345 (475)
Q Consensus 273 ~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k--r~LlVlDdv~~~~~~~~~~l~~~l~-~~~~gs~ilvTtR~~--~v-- 345 (475)
..|...+...........+....+..+..+. .+|+|+|+++......-..+...|. +.-.++++|+.---. +.
T Consensus 224 ~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTd 303 (529)
T KOG2227|consen 224 KKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTD 303 (529)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHH
Confidence 8888888332222222255566666666433 6899999985422112222333333 233566655433211 11
Q ss_pred ---HHh----cCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHhc
Q 046770 346 ---ALI----MGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCLLH 411 (475)
Q Consensus 346 ---~~~----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~ 411 (475)
... -.....+...|.+.++..++|..+...... ...+....+.+++||.|.---+.-+....+
T Consensus 304 R~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t---~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 304 RFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEEST---SIFLNAAIELCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred HHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccc---cccchHHHHHHHHHhccCchhHHHHHHHHH
Confidence 111 113466788999999999999988754332 122223444555666555444444433333
No 68
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=9.2e-06 Score=81.05 Aligned_cols=184 Identities=14% Similarity=0.209 Sum_probs=105.8
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCccc------ccCcCeEEE-EEecCCCC
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRV------QCHFDLKAW-TYVSQDFD 267 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~~~F~~~~w-v~v~~~~~ 267 (475)
.+++|.+..++.+.+++.. . .-.+.+.++|++|+||||+|+.+.+.... ...|...+. +.......
T Consensus 17 ~~iig~~~~~~~l~~~i~~-~------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 89 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIEN-N------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNS 89 (367)
T ss_pred HhcCCcHHHHHHHHHHHHc-C------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCC
Confidence 3578999999999998866 2 23357889999999999999998764211 011211111 11001011
Q ss_pred HHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecC-ChHHH
Q 046770 268 IIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTR-NADAA 346 (475)
Q Consensus 268 ~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR-~~~v~ 346 (475)
+ +.+..+++++... -..+++-++++|++.......+..++..+......+.+|++|. ...+.
T Consensus 90 ~-~~i~~l~~~~~~~----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~ 152 (367)
T PRK14970 90 V-DDIRNLIDQVRIP----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKII 152 (367)
T ss_pred H-HHHHHHHHHHhhc----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCC
Confidence 1 1112222221100 0124455899999976555556667665544334455555553 32222
Q ss_pred -HhcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHH
Q 046770 347 -LIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKAL 406 (475)
Q Consensus 347 -~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 406 (475)
........++.++++.++....+...+...+- .. ..+....|++.++|.+-.+...
T Consensus 153 ~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~-~i---~~~al~~l~~~~~gdlr~~~~~ 209 (367)
T PRK14970 153 PTILSRCQIFDFKRITIKDIKEHLAGIAVKEGI-KF---EDDALHIIAQKADGALRDALSI 209 (367)
T ss_pred HHHHhcceeEecCCccHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHhCCCCHHHHHHH
Confidence 22233467899999999999888876643321 11 2456777888999976644433
No 69
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=1.1e-05 Score=83.96 Aligned_cols=193 Identities=13% Similarity=0.096 Sum_probs=110.6
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCcc-EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHF-SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTK 273 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~ 273 (475)
.+++|.+.-++.|.+++.. +++ ..+.++|+.|+||||+|+.+++...-....+ +-.+... ...+
T Consensus 13 ~eivGq~~i~~~L~~~i~~--------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pCg~C----~~C~ 77 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDA--------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPT---ATPCGVC----ESCV 77 (584)
T ss_pred HHhcCcHHHHHHHHHHHHc--------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCccccc----HHHH
Confidence 3689999999999999876 233 3568999999999999999886321101000 0001110 1111
Q ss_pred HHHHHhhc-------CCCCCCChHHH---HHHHHHH-hCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEec-C
Q 046770 274 SILRSVAM-------GIVDHNDLNLL---QWKLKKQ-LFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITT-R 341 (475)
Q Consensus 274 ~il~~l~~-------~~~~~~~~~~l---~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R 341 (475)
.+...-.. ........+.. ...+... ..+++-++|||+++..+......++..+..-...+.+|++| .
T Consensus 78 ~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte 157 (584)
T PRK14952 78 ALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTE 157 (584)
T ss_pred HhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 11100000 00001112222 2222111 13455689999998887778888888877555566655555 4
Q ss_pred ChHHH-HhcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchH-HHHHH
Q 046770 342 NADAA-LIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPL-AAKAL 406 (475)
Q Consensus 342 ~~~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL-ai~~~ 406 (475)
...+. ...+....+++.+++.++..+.+.+.+...+. .. ..+....|++.++|.+- ++..+
T Consensus 158 ~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi-~i---~~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 158 PEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV-VV---DDAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred hHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 44433 23334578999999999998888776543321 11 13456678899999775 33333
No 70
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=3.7e-06 Score=88.63 Aligned_cols=197 Identities=13% Similarity=0.175 Sum_probs=113.2
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKS 274 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~ 274 (475)
.+++|-+.-++.|..++.. . .-...+.++|+.|+||||+|+.+++...-..... ....++.....+.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~-~------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~ 82 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAE-G------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRA 82 (585)
T ss_pred HHhcCCHHHHHHHHHHHHh-C------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHH
Confidence 3689999989999888866 2 1224568999999999999999986321100000 0011111122222
Q ss_pred HHHHhhcCC-----CCCCChHHHHHHHHHHh-----CCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCC-h
Q 046770 275 ILRSVAMGI-----VDHNDLNLLQWKLKKQL-----FGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRN-A 343 (475)
Q Consensus 275 il~~l~~~~-----~~~~~~~~l~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~ 343 (475)
+........ ......+.+. .+.+.+ .+++-++|||+++..+....+.++..+......+.+|++|.+ .
T Consensus 83 i~~~~~~d~~~i~~~~~~~vd~ir-~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~ 161 (585)
T PRK14950 83 IAEGSAVDVIEMDAASHTSVDDAR-EIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVH 161 (585)
T ss_pred HhcCCCCeEEEEeccccCCHHHHH-HHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChh
Confidence 222111100 0111222222 122221 245668999999776666677777776654455666665543 3
Q ss_pred HHHH-hcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHHH
Q 046770 344 DAAL-IMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCL 409 (475)
Q Consensus 344 ~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~ 409 (475)
.+.. .......+.+.+++.++....+...+...+. .. ..+.+..|++.++|.+..+......
T Consensus 162 kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl-~i---~~eal~~La~~s~Gdlr~al~~Lek 224 (585)
T PRK14950 162 KVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI-NL---EPGALEAIARAATGSMRDAENLLQQ 224 (585)
T ss_pred hhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3322 2233467889999999998888876543321 11 2356778999999998766554443
No 71
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=1.4e-05 Score=83.07 Aligned_cols=197 Identities=13% Similarity=0.179 Sum_probs=112.6
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKS 274 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~ 274 (475)
.+++|-+.-++.|.+.+.. . .-...+.++|+.|+||||+|+.+++...-..... ..+++.-...+.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~-~------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~-------~~pCg~C~sC~~ 81 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQE-N------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPT-------GEPCNTCEQCRK 81 (624)
T ss_pred HHhcCCHHHHHHHHHHHHc-C------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCC-------CCCCcccHHHHH
Confidence 3678988878888887765 2 2235778999999999999999887431111000 001111111111
Q ss_pred HHHHhhcCC-----CCCCChHHHHHHHHHH-----hCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCC-h
Q 046770 275 ILRSVAMGI-----VDHNDLNLLQWKLKKQ-----LFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRN-A 343 (475)
Q Consensus 275 il~~l~~~~-----~~~~~~~~l~~~l~~~-----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~ 343 (475)
+........ ......+.+. .|.+. ..+++-+||||+++..+...+..|+..+..-.....+|++|.. .
T Consensus 82 i~~g~hpDv~eId~a~~~~Id~iR-~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~ 160 (624)
T PRK14959 82 VTQGMHVDVVEIDGASNRGIDDAK-RLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPH 160 (624)
T ss_pred HhcCCCCceEEEecccccCHHHHH-HHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChh
Confidence 111100000 0011122211 12222 2356679999999877767777887777643345556565544 3
Q ss_pred HHH-HhcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCch-HHHHHHHHHh
Q 046770 344 DAA-LIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLP-LAAKALGCLL 410 (475)
Q Consensus 344 ~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P-Lai~~~~~~L 410 (475)
.+. ........+++++++.++....+.+.+..... . -..+.+..|++.++|.+ .|+..+...+
T Consensus 161 kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi-~---id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 161 KFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV-D---YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 333 22233467899999999999888876543221 1 12456777899999965 5777665544
No 72
>PRK05642 DNA replication initiation factor; Validated
Probab=98.34 E-value=9.8e-06 Score=75.31 Aligned_cols=155 Identities=17% Similarity=0.217 Sum_probs=92.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCce
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKR 304 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr 304 (475)
..+.|+|..|+|||.|++.+++... ..-..++|++..+ +... .. .+.+.+.+-.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~--~~~~~v~y~~~~~------~~~~--------------~~----~~~~~~~~~d 99 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFE--QRGEPAVYLPLAE------LLDR--------------GP----ELLDNLEQYE 99 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH--hCCCcEEEeeHHH------HHhh--------------hH----HHHHhhhhCC
Confidence 5789999999999999999987432 1113355665432 1110 01 1222222222
Q ss_pred EEEEEECCCCCC-hhhHhH-hhCcCCC-CCCCcEEEEecCChH---------HHHhcCCCceeeCCCCCHHHHHHHHhhc
Q 046770 305 FLLVLDDVWNEN-YNDWID-LSRPFQD-GAPGSKIIITTRNAD---------AALIMGTVQAYPLKGLSNDDCMCLFTQH 372 (475)
Q Consensus 305 ~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~ilvTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 372 (475)
+|||||+.... ...|.. +...+.. ...|..+|+|++... ....+....++++++++.++-..++..+
T Consensus 100 -~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 100 -LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred -EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 68899996331 124433 3333321 224667888887532 1222334467899999999999999966
Q ss_pred ccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHh
Q 046770 373 SLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCLL 410 (475)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L 410 (475)
+.... .. -.+++..-|++.+.|..-.+..+-..|
T Consensus 179 a~~~~-~~---l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 179 ASRRG-LH---LTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHcC-CC---CCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 54321 11 225777889999998877766555554
No 73
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=1.5e-05 Score=83.54 Aligned_cols=198 Identities=14% Similarity=0.138 Sum_probs=109.0
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCcc-EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEE-ecCCCCHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHF-SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTY-VSQDFDIIRVT 272 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~-v~~~~~~~~~l 272 (475)
.+++|-+.-+..|..++.. +.+ ..+.++|+.|+||||+|+.+.+...-....+...|-. +..+...-...
T Consensus 16 ~eivGQe~i~~~L~~~i~~--------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC 87 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRM--------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESC 87 (620)
T ss_pred HHhcCcHHHHHHHHHHHHc--------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHH
Confidence 3688988888888888865 223 4478999999999999988876321111010000110 00111111111
Q ss_pred HHHHHHhhcC-----CCCCCChHHHHHHHHHH----hCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEec-CC
Q 046770 273 KSILRSVAMG-----IVDHNDLNLLQWKLKKQ----LFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITT-RN 342 (475)
Q Consensus 273 ~~il~~l~~~-----~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~ 342 (475)
+.+...-... .......+++...+... ..+++-++|+||++..+......++..+..-...+.+|++| +.
T Consensus 88 ~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~ 167 (620)
T PRK14954 88 RDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTEL 167 (620)
T ss_pred HHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 1111100000 00111123333222222 23455588999998776667777887776544455555444 44
Q ss_pred hHHH-HhcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHH
Q 046770 343 ADAA-LIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAK 404 (475)
Q Consensus 343 ~~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 404 (475)
..+. ........+++.+++.++....+.+.+...+. . -..+.+..|++.++|..--+.
T Consensus 168 ~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi-~---I~~eal~~La~~s~Gdlr~al 226 (620)
T PRK14954 168 HKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI-Q---IDADALQLIARKAQGSMRDAQ 226 (620)
T ss_pred hhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHhCCCHHHHH
Confidence 4433 23345578999999999988888765532221 1 124566779999999665333
No 74
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.30 E-value=5.1e-06 Score=90.86 Aligned_cols=155 Identities=15% Similarity=0.184 Sum_probs=86.3
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccc---c-CcCeEEE-EEecCCCCHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQ---C-HFDLKAW-TYVSQDFDII 269 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---~-~F~~~~w-v~v~~~~~~~ 269 (475)
..++||+.++.++++.|.. ....-+.++|++|+||||||+.++...... . -....+| +..+.
T Consensus 187 d~~iGr~~ei~~~i~~l~r--------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~----- 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLR--------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL----- 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhc--------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh-----
Confidence 4689999999999999876 223345699999999999999998742111 0 1122332 22211
Q ss_pred HHHHHHHHHhhcCCCCCCCh-HHHHHHHHHHh-CCceEEEEEECCCCCC-------hhhHhHhhCcCCCCCCCcEEEEec
Q 046770 270 RVTKSILRSVAMGIVDHNDL-NLLQWKLKKQL-FGKRFLLVLDDVWNEN-------YNDWIDLSRPFQDGAPGSKIIITT 340 (475)
Q Consensus 270 ~~l~~il~~l~~~~~~~~~~-~~l~~~l~~~l-~~kr~LlVlDdv~~~~-------~~~~~~l~~~l~~~~~gs~ilvTt 340 (475)
+........+. ..+...+.+.- .+++.+|++|+++... ..+-..++.+.... ..-++|-||
T Consensus 254 ---------l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~-G~l~~IgaT 323 (852)
T TIGR03345 254 ---------LQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR-GELRTIAAT 323 (852)
T ss_pred ---------hhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC-CCeEEEEec
Confidence 00000001111 12222222221 2568999999996431 11111233222221 234666666
Q ss_pred CChHHHH-------hcCCCceeeCCCCCHHHHHHHHhhc
Q 046770 341 RNADAAL-------IMGTVQAYPLKGLSNDDCMCLFTQH 372 (475)
Q Consensus 341 R~~~v~~-------~~~~~~~~~l~~L~~~~~~~lf~~~ 372 (475)
...+... .......+.+++++.++...++...
T Consensus 324 T~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 324 TWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred CHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHH
Confidence 6543321 2234578999999999999997543
No 75
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.28 E-value=6.7e-06 Score=89.11 Aligned_cols=156 Identities=15% Similarity=0.155 Sum_probs=85.6
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcc---cccCc-CeEEEEEecCCCCHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSR---VQCHF-DLKAWTYVSQDFDIIR 270 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~---~~~~F-~~~~wv~v~~~~~~~~ 270 (475)
..++||+++++++++.|.. . ...-+.++|++|+|||++|+.+++... +...+ ...+|. + +..
T Consensus 182 ~~~igr~~ei~~~~~~L~~-~-------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~- 247 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCR-R-------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMG- 247 (731)
T ss_pred CcccCcHHHHHHHHHHHhc-C-------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHH-
Confidence 3689999999999998876 2 223467999999999999999987421 11111 233432 1 111
Q ss_pred HHHHHHHHhhcCCCCCCChHHHHHHHHHHh-CCceEEEEEECCCCCC---------hhhHhHhhCcCCCCCCCcEEEEec
Q 046770 271 VTKSILRSVAMGIVDHNDLNLLQWKLKKQL-FGKRFLLVLDDVWNEN---------YNDWIDLSRPFQDGAPGSKIIITT 340 (475)
Q Consensus 271 ~l~~il~~l~~~~~~~~~~~~l~~~l~~~l-~~kr~LlVlDdv~~~~---------~~~~~~l~~~l~~~~~gs~ilvTt 340 (475)
.++. ... ...+.+.....+.+.+ ..++.+|+||+++.-. .+.-..+...+.. ..-++|-+|
T Consensus 248 ---~l~a---~~~-~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~--g~i~~IgaT 318 (731)
T TIGR02639 248 ---SLLA---GTK-YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS--GKLRCIGST 318 (731)
T ss_pred ---HHhh---hcc-ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC--CCeEEEEec
Confidence 1111 000 1112222222222222 3457899999996321 1111223333322 123555555
Q ss_pred CChHHHH-------hcCCCceeeCCCCCHHHHHHHHhhcc
Q 046770 341 RNADAAL-------IMGTVQAYPLKGLSNDDCMCLFTQHS 373 (475)
Q Consensus 341 R~~~v~~-------~~~~~~~~~l~~L~~~~~~~lf~~~~ 373 (475)
...+... .......+.+++++.++..+++....
T Consensus 319 t~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 319 TYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred CHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 5432211 11235679999999999999998644
No 76
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.27 E-value=1.3e-05 Score=81.57 Aligned_cols=185 Identities=11% Similarity=0.012 Sum_probs=108.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCce
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKR 304 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr 304 (475)
.-+.|+|..|+|||+|++.+.+.......-..+++++ ..+++..+...+.... .....+.+.+. ..
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~-------~~~~~~~~~~~-~~ 207 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH-------KEIEQFKNEIC-QN 207 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh-------hHHHHHHHHhc-cC
Confidence 4588999999999999999988422111111233433 3456666666654311 11223333333 34
Q ss_pred EEEEEECCCCCC--hhhHhHhhCcCCC-CCCCcEEEEecCCh---------HHHHhcCCCceeeCCCCCHHHHHHHHhhc
Q 046770 305 FLLVLDDVWNEN--YNDWIDLSRPFQD-GAPGSKIIITTRNA---------DAALIMGTVQAYPLKGLSNDDCMCLFTQH 372 (475)
Q Consensus 305 ~LlVlDdv~~~~--~~~~~~l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 372 (475)
-+|||||+.... ....+.+...+.. ...|..||+|+... .+...+...-++.+++++.++...++.++
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 488999996543 1122333333321 12355788887643 22223334567889999999999999988
Q ss_pred ccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHhc-----C----CCChhHHHHHHhc
Q 046770 373 SLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCLLH-----G----KYDPSDWESVLNS 425 (475)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~-----~----~~~~~~w~~~l~~ 425 (475)
+-..+- ...-.+++..-|++.+.|.|-.+.-+...+. . ..+.+.-+.++..
T Consensus 288 ~~~~gl--~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~ 347 (450)
T PRK14087 288 IKNQNI--KQEVTEEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRD 347 (450)
T ss_pred HHhcCC--CCCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhh
Confidence 743221 0123367888899999999988876654442 1 1344555556554
No 77
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.27 E-value=1.7e-05 Score=72.91 Aligned_cols=190 Identities=17% Similarity=0.168 Sum_probs=104.1
Q ss_pred cccccc-hhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHH
Q 046770 196 KVYGRS-KEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKS 274 (475)
Q Consensus 196 ~~vGR~-~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~ 274 (475)
-++|.. +..-.....+..... .....+.|+|+.|+|||.|.+.+++.......=..++++ +..++...
T Consensus 10 fv~g~~N~~a~~~~~~ia~~~~-----~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~------~~~~f~~~ 78 (219)
T PF00308_consen 10 FVVGESNELAYAAAKAIAENPG-----ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYL------SAEEFIRE 78 (219)
T ss_dssp S--TTTTHHHHHHHHHHHHSTT-----TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEE------EHHHHHHH
T ss_pred CCcCCcHHHHHHHHHHHHhcCC-----CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceee------cHHHHHHH
Confidence 345653 333344444544121 234567899999999999999999853221111124444 34455566
Q ss_pred HHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCCh-hhHhH-hhCcCCC-CCCCcEEEEecCCh--------
Q 046770 275 ILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENY-NDWID-LSRPFQD-GAPGSKIIITTRNA-------- 343 (475)
Q Consensus 275 il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~-~~~~~-l~~~l~~-~~~gs~ilvTtR~~-------- 343 (475)
+...+... ... .+.+.+.+ -=+|+|||++.-.. ..|.. +...+.. ...|.++|+|++..
T Consensus 79 ~~~~~~~~-----~~~----~~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~ 148 (219)
T PF00308_consen 79 FADALRDG-----EIE----EFKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLL 148 (219)
T ss_dssp HHHHHHTT-----SHH----HHHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-
T ss_pred HHHHHHcc-----cch----hhhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccC
Confidence 66555442 222 23333432 34889999965322 22332 2222221 13467899999642
Q ss_pred -HHHHhcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHh
Q 046770 344 -DAALIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCLL 410 (475)
Q Consensus 344 -~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L 410 (475)
...+.+...-++++++++.++...++.+.+....- .-.+++..-|++.+.+..-.+..+-..|
T Consensus 149 ~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~----~l~~~v~~~l~~~~~~~~r~L~~~l~~l 212 (219)
T PF00308_consen 149 PDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGI----ELPEEVIEYLARRFRRDVRELEGALNRL 212 (219)
T ss_dssp HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT------S-HHHHHHHHHHTTSSHHHHHHHHHHH
T ss_pred hhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCC----CCcHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 33344446678999999999999999988754332 1335677778888877766665544433
No 78
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=5.7e-05 Score=77.47 Aligned_cols=196 Identities=12% Similarity=0.124 Sum_probs=107.5
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHH-
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTK- 273 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~- 273 (475)
.+++|-+.-+..|.+++.. . .-.....++|+.|+||||+|+.++....-...-+ +-.+....+-..+-.
T Consensus 16 ~diiGq~~i~~~L~~~i~~-~------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~---~~pc~~c~nc~~i~~g 85 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKL-Q------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQE---GEPCGKCENCVEIDKG 85 (486)
T ss_pred HHccChHHHHHHHHHHHHc-C------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCC---CCCCCccHHHHHHhcC
Confidence 3688999989999998866 2 2234567899999999999999876321000000 000000000000000
Q ss_pred ---HHHHHhhcCCCCCCChHHHHHHHHHHh-----CCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEec-CChH
Q 046770 274 ---SILRSVAMGIVDHNDLNLLQWKLKKQL-----FGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITT-RNAD 344 (475)
Q Consensus 274 ---~il~~l~~~~~~~~~~~~l~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~ 344 (475)
+++ .+.. ......+.. +.+.+.+ .+++-++|+|+++..+......++..+......+.+|++| +...
T Consensus 86 ~~~d~~-eida--as~~gvd~i-r~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~k 161 (486)
T PRK14953 86 SFPDLI-EIDA--ASNRGIDDI-RALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDK 161 (486)
T ss_pred CCCcEE-EEeC--ccCCCHHHH-HHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHH
Confidence 000 0000 000111111 1222221 3566799999998776666677777766444455555544 4333
Q ss_pred HH-HhcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHH
Q 046770 345 AA-LIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGC 408 (475)
Q Consensus 345 v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~ 408 (475)
+. ........+.+.+++.++....+.+.+-..+- . ...+....|++.++|.+..+.....
T Consensus 162 l~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi-~---id~~al~~La~~s~G~lr~al~~Ld 222 (486)
T PRK14953 162 IPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI-E---YEEKALDLLAQASEGGMRDAASLLD 222 (486)
T ss_pred HHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 32 22233467899999999999888876543221 1 1235566788999998765554443
No 79
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.26 E-value=1.4e-05 Score=79.49 Aligned_cols=182 Identities=14% Similarity=0.093 Sum_probs=98.6
Q ss_pred cccccccchhHHHHHHHHhcCCCCC-----CCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCH
Q 046770 194 EAKVYGRSKEREEIVELLLKEDGTS-----HNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDI 268 (475)
Q Consensus 194 ~~~~vGR~~e~~~l~~~L~~~~~~~-----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~ 268 (475)
..++.|++..+++|.+.+...-... -.-...+-+.|+|++|+|||+||+.+++.. ...| +.+..
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l--~~~~-----~~v~~---- 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET--NATF-----IRVVG---- 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC--CCCE-----Eecch----
Confidence 3578999999999988764310000 000224568899999999999999999843 3333 22211
Q ss_pred HHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCC-----------h---hhHhHhhCcCC--CCCC
Q 046770 269 IRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNEN-----------Y---NDWIDLSRPFQ--DGAP 332 (475)
Q Consensus 269 ~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~-----------~---~~~~~l~~~l~--~~~~ 332 (475)
..+..... . .....+...+...-...+.+|+|||++... . ..+..++..+. ....
T Consensus 190 ~~l~~~~~----g-----~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 260 (364)
T TIGR01242 190 SELVRKYI----G-----EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRG 260 (364)
T ss_pred HHHHHHhh----h-----HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 11111110 0 011111112222223457899999985421 1 11223332222 1224
Q ss_pred CcEEEEecCChHHH-Hh-c---CCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCch
Q 046770 333 GSKIIITTRNADAA-LI-M---GTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLP 400 (475)
Q Consensus 333 gs~ilvTtR~~~v~-~~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P 400 (475)
+..||.||...... .. . .-...+.+...+.++..++|..+...... ...-. ...+++.+.|..
T Consensus 261 ~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l-~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 261 NVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKL-AEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCC-CccCC----HHHHHHHcCCCC
Confidence 67888888764321 11 1 12356889999999999999987644321 11112 345777787764
No 80
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.24 E-value=1.3e-05 Score=74.53 Aligned_cols=194 Identities=15% Similarity=0.114 Sum_probs=118.5
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEE-EEecCCCCHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAW-TYVSQDFDIIRVTK 273 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~w-v~v~~~~~~~~~l~ 273 (475)
.+++|-+..++-|.+.+.. ...+....+|++|.|||+-|..++...--...|.+++- .+.+..-.+. +.+
T Consensus 36 de~~gQe~vV~~L~~a~~~--------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr 106 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR--------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVR 106 (346)
T ss_pred HhhcchHHHHHHHHHHHhh--------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chh
Confidence 4688988888888888876 45678999999999999999888764322344554442 2223221111 000
Q ss_pred HHHHHhhcCCCCCCChHHHHHHHHHHh--CCce-EEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCChHH-H-Hh
Q 046770 274 SILRSVAMGIVDHNDLNLLQWKLKKQL--FGKR-FLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNADA-A-LI 348 (475)
Q Consensus 274 ~il~~l~~~~~~~~~~~~l~~~l~~~l--~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v-~-~~ 348 (475)
. ...+...+........ ..++ -+||||+++....+.|..++..+......++.|+.+..-+. . ..
T Consensus 107 ~----------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi 176 (346)
T KOG0989|consen 107 E----------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPL 176 (346)
T ss_pred h----------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHH
Confidence 0 0111111111111000 1123 37889999988889999999988876667777666654221 1 11
Q ss_pred cCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHhc
Q 046770 349 MGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCLLH 411 (475)
Q Consensus 349 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~ 411 (475)
.+...-+..++|..++...-+...+-..+...+ .+..+.|++.++|.---+.++...++
T Consensus 177 ~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d----~~al~~I~~~S~GdLR~Ait~Lqsls 235 (346)
T KOG0989|consen 177 VSRCQKFRFKKLKDEDIVDRLEKIASKEGVDID----DDALKLIAKISDGDLRRAITTLQSLS 235 (346)
T ss_pred HhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCcHHHHHHHHHHhh
Confidence 122345788999999999888887754433222 45567799999987554444444443
No 81
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.24 E-value=1.3e-05 Score=71.57 Aligned_cols=102 Identities=18% Similarity=0.175 Sum_probs=61.4
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKS 274 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~ 274 (475)
.++||-++.++.+.-...+ ++.+-+.|.||+|+||||-+..+++..--..+-+.+.-.+.|
T Consensus 27 ~dIVGNe~tv~rl~via~~--------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNAS----------- 87 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKE--------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNAS----------- 87 (333)
T ss_pred HHhhCCHHHHHHHHHHHHc--------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCc-----------
Confidence 4689988888887766555 567789999999999999888777632111111222222222
Q ss_pred HHHHhhcCCCCCCChHHHHHHHHHHhC-------CceEEEEEECCCCCChhhHhHhhC
Q 046770 275 ILRSVAMGIVDHNDLNLLQWKLKKQLF-------GKRFLLVLDDVWNENYNDWIDLSR 325 (475)
Q Consensus 275 il~~l~~~~~~~~~~~~l~~~l~~~l~-------~kr~LlVlDdv~~~~~~~~~~l~~ 325 (475)
+....+.+...++.+.+ ++.-++|||+..+........++.
T Consensus 88 ----------deRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRR 135 (333)
T KOG0991|consen 88 ----------DERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRR 135 (333)
T ss_pred ----------cccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHH
Confidence 22333444444444332 455688999997655433334443
No 82
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.22 E-value=5.1e-06 Score=81.37 Aligned_cols=89 Identities=17% Similarity=0.172 Sum_probs=62.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCC--CCHHHHHHHHHHHhhcCCCCCCChH------HHHHHH
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQD--FDIIRVTKSILRSVAMGIVDHNDLN------LLQWKL 296 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~--~~~~~~l~~il~~l~~~~~~~~~~~------~l~~~l 296 (475)
..++|+|++|+|||||++.+++.... ++|+..+|+.+.+. .++.++++.++..+-....+..... ......
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~A 247 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKA 247 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHH
Confidence 46899999999999999999996543 37999999999865 7888999988655443332222111 111122
Q ss_pred HHH-hCCceEEEEEECCCC
Q 046770 297 KKQ-LFGKRFLLVLDDVWN 314 (475)
Q Consensus 297 ~~~-l~~kr~LlVlDdv~~ 314 (475)
... -.|++.+|++|++..
T Consensus 248 e~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 248 KRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHcCCCeEEEEEChhH
Confidence 222 368999999999943
No 83
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.21 E-value=7.9e-06 Score=89.62 Aligned_cols=156 Identities=21% Similarity=0.148 Sum_probs=85.8
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcc---cccCc-CeEEEEEecCCCCHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSR---VQCHF-DLKAWTYVSQDFDIIR 270 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~---~~~~F-~~~~wv~v~~~~~~~~ 270 (475)
..++||++++++++++|.. . ..+-+.++|++|+|||++|+.++.... +.... ...+|. + +...
T Consensus 179 ~~~igr~~ei~~~~~~L~r-~-------~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~ 245 (821)
T CHL00095 179 DPVIGREKEIERVIQILGR-R-------TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGL 245 (821)
T ss_pred CCCCCcHHHHHHHHHHHcc-c-------ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHH
Confidence 3589999999999999976 2 223457999999999999999877421 11111 234442 1 1111
Q ss_pred HHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCC-------hhhHhHhhCcCCCCCCCcEEEEecCCh
Q 046770 271 VTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNEN-------YNDWIDLSRPFQDGAPGSKIIITTRNA 343 (475)
Q Consensus 271 ~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~-------~~~~~~l~~~l~~~~~gs~ilvTtR~~ 343 (475)
+ + .+......-.+.+...+.+.-..++.+|+||+++.-. ......++.+.... ..-++|.+|...
T Consensus 246 l----~---ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r-g~l~~IgaTt~~ 317 (821)
T CHL00095 246 L----L---AGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR-GELQCIGATTLD 317 (821)
T ss_pred H----h---ccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC-CCcEEEEeCCHH
Confidence 1 1 1111111111222223333334568999999995210 01122233222221 234566666655
Q ss_pred HHHH-------hcCCCceeeCCCCCHHHHHHHHhh
Q 046770 344 DAAL-------IMGTVQAYPLKGLSNDDCMCLFTQ 371 (475)
Q Consensus 344 ~v~~-------~~~~~~~~~l~~L~~~~~~~lf~~ 371 (475)
+... .......+.+...+.++...++..
T Consensus 318 ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 318 EYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 4422 122446788888999988888764
No 84
>PF14516 AAA_35: AAA-like domain
Probab=98.21 E-value=0.00015 Score=70.98 Aligned_cols=199 Identities=15% Similarity=0.133 Sum_probs=117.0
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCC-----CCHHH
Q 046770 196 KVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQD-----FDIIR 270 (475)
Q Consensus 196 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~-----~~~~~ 270 (475)
..+.|..--+++.+.|.+ . -..+.|.|+..+|||+|...+.+..+.. .+ ..+++++... .+...
T Consensus 12 ~Yi~R~~~e~~~~~~i~~-~--------G~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~~ 80 (331)
T PF14516_consen 12 FYIERPPAEQECYQEIVQ-P--------GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLEQ 80 (331)
T ss_pred cccCchHHHHHHHHHHhc-C--------CCEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHHH
Confidence 456787566677777755 2 1488999999999999999998754332 33 3456766542 24566
Q ss_pred HHHHHHHHhhcCCCC-----------CCChHHHHHHHHHHh---CCceEEEEEECCCCCCh-----hhHhHhhCcCCC-C
Q 046770 271 VTKSILRSVAMGIVD-----------HNDLNLLQWKLKKQL---FGKRFLLVLDDVWNENY-----NDWIDLSRPFQD-G 330 (475)
Q Consensus 271 ~l~~il~~l~~~~~~-----------~~~~~~l~~~l~~~l---~~kr~LlVlDdv~~~~~-----~~~~~l~~~l~~-~ 330 (475)
.+..++..+.....- ..........+.+.+ .+++.+|+||++..... .++-.+++.+-. .
T Consensus 81 f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~ 160 (331)
T PF14516_consen 81 FLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQR 160 (331)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhc
Confidence 666666655443311 112223333444432 26899999999954211 112222222111 1
Q ss_pred C----CCc-EE-EEecCChHHHH-h----cCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCc
Q 046770 331 A----PGS-KI-IITTRNADAAL-I----MGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGL 399 (475)
Q Consensus 331 ~----~gs-~i-lvTtR~~~v~~-~----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~ 399 (475)
. ... ++ ++.+....... . ......++|.+++.+|...|+.++-..- . ....++|...++|+
T Consensus 161 ~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~-----~---~~~~~~l~~~tgGh 232 (331)
T PF14516_consen 161 KNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF-----S---QEQLEQLMDWTGGH 232 (331)
T ss_pred ccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC-----C---HHHHHHHHHHHCCC
Confidence 0 111 22 22221111111 0 1123568899999999999998764221 1 22378899999999
Q ss_pred hHHHHHHHHHhcCC
Q 046770 400 PLAAKALGCLLHGK 413 (475)
Q Consensus 400 PLai~~~~~~L~~~ 413 (475)
|..+..++..+..+
T Consensus 233 P~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 233 PYLVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999775
No 85
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=5.2e-05 Score=80.02 Aligned_cols=198 Identities=11% Similarity=0.159 Sum_probs=111.8
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKS 274 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~ 274 (475)
.+++|.+.-+..|..++.. . .-...+.++|+.|+||||+|+.+++..--. ..+... ......-...+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~-~------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~-~~~~~~----~~~Cg~C~~C~~ 83 (620)
T PRK14948 16 DELVGQEAIATTLKNALIS-N------RIAPAYLFTGPRGTGKTSSARILAKSLNCL-NSDKPT----PEPCGKCELCRA 83 (620)
T ss_pred hhccChHHHHHHHHHHHHc-C------CCCceEEEECCCCCChHHHHHHHHHHhcCC-CcCCCC----CCCCcccHHHHH
Confidence 3688999889999988876 2 122467899999999999999998742111 110000 011111122222
Q ss_pred HHHHhhc-----CCCCCCChHHHHHHHHHH----hCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCC-hH
Q 046770 275 ILRSVAM-----GIVDHNDLNLLQWKLKKQ----LFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRN-AD 344 (475)
Q Consensus 275 il~~l~~-----~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~ 344 (475)
+...... ........+.+.+.+... ..+++-++|||+++..+...+..++..+..-...+.+|++|.+ ..
T Consensus 84 i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ 163 (620)
T PRK14948 84 IAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQR 163 (620)
T ss_pred HhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhh
Confidence 2211110 000112222222222111 1245568999999877767778887777654445555555544 32
Q ss_pred HH-HhcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHH
Q 046770 345 AA-LIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGC 408 (475)
Q Consensus 345 v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~ 408 (475)
+. ........+.+.+++.++....+...+...+. .. ..+.+..|++.++|.+..+..+..
T Consensus 164 llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi-~i---s~~al~~La~~s~G~lr~A~~lLe 224 (620)
T PRK14948 164 VLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESI-EI---EPEALTLVAQRSQGGLRDAESLLD 224 (620)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCC-CC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 22 22334467888899999888877765533221 11 134567899999998875554444
No 86
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.21 E-value=5.4e-05 Score=77.81 Aligned_cols=195 Identities=13% Similarity=0.123 Sum_probs=110.9
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKS 274 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~ 274 (475)
.+++|-+.-++.|...+.. . .-.....++|+.|+||||+|+.+.+..--....+. .+...-.....
T Consensus 14 deiiGqe~v~~~L~~~I~~-g------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~-------~pC~~C~~C~~ 79 (535)
T PRK08451 14 DELIGQESVSKTLSLALDN-N------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSS-------TPCDTCIQCQS 79 (535)
T ss_pred HHccCcHHHHHHHHHHHHc-C------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCC-------CCCcccHHHHH
Confidence 3689988888888888866 2 22346689999999999999987653210000000 00000000000
Q ss_pred HHHHhhc-----CCCCCCChHHHHHHHHHH----hCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCCh-H
Q 046770 275 ILRSVAM-----GIVDHNDLNLLQWKLKKQ----LFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNA-D 344 (475)
Q Consensus 275 il~~l~~-----~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~ 344 (475)
+...... ........+.+...+... ..+++-++|+|+++..+......++..+..-...+.+|++|.+. .
T Consensus 80 ~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~k 159 (535)
T PRK08451 80 ALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLK 159 (535)
T ss_pred HhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhh
Confidence 0000000 000001122222222211 12455689999998887777777877776545567777766553 2
Q ss_pred HH-HhcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHH
Q 046770 345 AA-LIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALG 407 (475)
Q Consensus 345 v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 407 (475)
+. ........+++.+++.++....+.+.+...+. . -..+.+..|++.++|.+.-+..+.
T Consensus 160 L~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi-~---i~~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 160 LPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV-S---YEPEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred CchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCcHHHHHHHH
Confidence 11 12223467999999999999988876543321 1 124567789999999986655544
No 87
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.21 E-value=5.7e-05 Score=79.85 Aligned_cols=190 Identities=17% Similarity=0.207 Sum_probs=107.5
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccC---cC-eEEEE-EecCCCCHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCH---FD-LKAWT-YVSQDFDII 269 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~---F~-~~~wv-~v~~~~~~~ 269 (475)
.+++|.+.-++.|..++.. . .-.....++|+.|+||||+|+.++...--... +. |..-. +....++..
T Consensus 18 ~dIiGQe~~v~~L~~aI~~-~------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvi 90 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKS-N------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDII 90 (725)
T ss_pred HHhcCcHHHHHHHHHHHHc-C------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEE
Confidence 3688998888999998876 2 22345679999999999999998763110000 00 00000 000000000
Q ss_pred HHHHHHHHHhhcCCCCCCChHHHHHHHHHHh-----CCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEE-EecCCh
Q 046770 270 RVTKSILRSVAMGIVDHNDLNLLQWKLKKQL-----FGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKII-ITTRNA 343 (475)
Q Consensus 270 ~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il-vTtR~~ 343 (475)
..........+++ +.+.+.+ .+++-++|+|+++......+..++..+..-...+.+| +|+...
T Consensus 91 ----------eidaasn~~vd~I-ReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~ 159 (725)
T PRK07133 91 ----------EMDAASNNGVDEI-RELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVH 159 (725)
T ss_pred ----------EEeccccCCHHHH-HHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChh
Confidence 0000000112221 1222222 3566699999998777677888877776444455544 555444
Q ss_pred HHH-HhcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHH
Q 046770 344 DAA-LIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKAL 406 (475)
Q Consensus 344 ~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 406 (475)
.+. ........+.+.+++.++....+...+-..+. . ...+.+..|++.++|.+--+..+
T Consensus 160 KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI-~---id~eAl~~LA~lS~GslR~Alsl 219 (725)
T PRK07133 160 KIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENI-S---YEKNALKLIAKLSSGSLRDALSI 219 (725)
T ss_pred hhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 443 23334568999999999999888865432221 1 11345677999999976544333
No 88
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.20 E-value=3.8e-05 Score=72.76 Aligned_cols=137 Identities=12% Similarity=0.097 Sum_probs=70.5
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhC
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLF 301 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 301 (475)
+....+.++|++|+||||+|+.+++............++.++.. ++ ..... ..........+... .
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~----~l----~~~~~-----g~~~~~~~~~~~~a-~ 105 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA----DL----VGEYI-----GHTAQKTREVIKKA-L 105 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH----Hh----hhhhc-----cchHHHHHHHHHhc-c
Confidence 34566889999999999999999763211111111122332221 11 11110 01112222222222 1
Q ss_pred CceEEEEEECCCCCC--------hhhHhHhhCcCCCCCCCcEEEEecCChHHHH-------hcCC-CceeeCCCCCHHHH
Q 046770 302 GKRFLLVLDDVWNEN--------YNDWIDLSRPFQDGAPGSKIIITTRNADAAL-------IMGT-VQAYPLKGLSNDDC 365 (475)
Q Consensus 302 ~kr~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~-------~~~~-~~~~~l~~L~~~~~ 365 (475)
.-+|+||+++... .+....++..+........+|+++...+... .... ...+.+++++.++.
T Consensus 106 --~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el 183 (261)
T TIGR02881 106 --GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEEL 183 (261)
T ss_pred --CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHH
Confidence 3488999996421 1233444444444334445666655433211 1112 24588899999999
Q ss_pred HHHHhhccc
Q 046770 366 MCLFTQHSL 374 (475)
Q Consensus 366 ~~lf~~~~~ 374 (475)
.+++.+.+.
T Consensus 184 ~~Il~~~~~ 192 (261)
T TIGR02881 184 MEIAERMVK 192 (261)
T ss_pred HHHHHHHHH
Confidence 999987764
No 89
>CHL00181 cbbX CbbX; Provisional
Probab=98.20 E-value=8.6e-05 Score=71.03 Aligned_cols=135 Identities=13% Similarity=0.028 Sum_probs=74.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCce
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKR 304 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr 304 (475)
..+.++|++|+||||+|+.++........-....|+.++. . .++..+.+.. .......+.+. . .
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~----~l~~~~~g~~-----~~~~~~~l~~a-~--g 123 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----D----DLVGQYIGHT-----APKTKEVLKKA-M--G 123 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----H----HHHHHHhccc-----hHHHHHHHHHc-c--C
Confidence 3578999999999999999976321111111122444442 1 2222222111 11122223322 2 2
Q ss_pred EEEEEECCCCC---------ChhhHhHhhCcCCCCCCCcEEEEecCChHHHHhc--------CCCceeeCCCCCHHHHHH
Q 046770 305 FLLVLDDVWNE---------NYNDWIDLSRPFQDGAPGSKIIITTRNADAALIM--------GTVQAYPLKGLSNDDCMC 367 (475)
Q Consensus 305 ~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~--------~~~~~~~l~~L~~~~~~~ 367 (475)
-+|+||++... ..+....+...+.....+..||+++....+.... .-...+.+.+++.++..+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 49999999642 1122333444444444566777777654432211 123568899999999999
Q ss_pred HHhhcccC
Q 046770 368 LFTQHSLE 375 (475)
Q Consensus 368 lf~~~~~~ 375 (475)
++...+-.
T Consensus 204 I~~~~l~~ 211 (287)
T CHL00181 204 IAKIMLEE 211 (287)
T ss_pred HHHHHHHH
Confidence 98877643
No 90
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.19 E-value=9.1e-05 Score=71.03 Aligned_cols=203 Identities=19% Similarity=0.213 Sum_probs=118.9
Q ss_pred cccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHH
Q 046770 194 EAKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTK 273 (475)
Q Consensus 194 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~ 273 (475)
++.+.+|+.++..+..++.+ ... .-+++|.|.|-.|.|||.+.+++++... ...+|+++-+.++..-++.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~-~~~----~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle 74 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGN-NSC----TIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLE 74 (438)
T ss_pred ccCccchHHHHHHHHHHhCC-CCc----ccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHH
Confidence 56789999999999999977 321 2346679999999999999999998542 2368999999999999999
Q ss_pred HHHHHhhcCCCCC-------CChHHHHHHHHHH--hC--CceEEEEEECCCCCC---hhhHhHh---hCcCCCCCCCcEE
Q 046770 274 SILRSVAMGIVDH-------NDLNLLQWKLKKQ--LF--GKRFLLVLDDVWNEN---YNDWIDL---SRPFQDGAPGSKI 336 (475)
Q Consensus 274 ~il~~l~~~~~~~-------~~~~~l~~~l~~~--l~--~kr~LlVlDdv~~~~---~~~~~~l---~~~l~~~~~gs~i 336 (475)
.|+.+.+....+. .+.......+.++ .+ ++.++||||++..-. ..-+..+ -..++ .+...|
T Consensus 75 ~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~--~~~i~i 152 (438)
T KOG2543|consen 75 KILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLN--EPTIVI 152 (438)
T ss_pred HHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhC--CCceEE
Confidence 9999986222111 2223334444441 22 468999999995321 1111111 11111 123333
Q ss_pred EEecCC-hHHHHh-cCC--CceeeCCCCCHHHHHHHHhhcccCCCCCC-CCchHHHHHHHHHHhcCCchHHHHHHHHH
Q 046770 337 IITTRN-ADAALI-MGT--VQAYPLKGLSNDDCMCLFTQHSLETRDFS-MHQPLKEIGAKIVIKCNGLPLAAKALGCL 409 (475)
Q Consensus 337 lvTtR~-~~v~~~-~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~-~~~~~~~~~~~I~~~c~G~PLai~~~~~~ 409 (475)
++..-. +..... ++. ..++....-+.++...++.+.-.+..... ...-+.-+..-....|+ -+-.+..++..
T Consensus 153 ils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r~~~~ya~fl~v~l~vF~~~cr-d~~eL~~~~~~ 229 (438)
T KOG2543|consen 153 ILSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNPGKRKLDVYAQFLHVLLQVFYMACR-DVNELRSLISL 229 (438)
T ss_pred EEeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHH
Confidence 333222 222221 233 24566788889999888875432111100 01112223344556666 55555555544
No 91
>PRK06620 hypothetical protein; Validated
Probab=98.19 E-value=5.1e-05 Score=69.38 Aligned_cols=142 Identities=13% Similarity=0.051 Sum_probs=83.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCce
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKR 304 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr 304 (475)
+.+.|+|++|+|||+|++.+++... . .++. ..+.. . +.. +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~~---------------------~-------~~~-~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFFN---------------------E-------EIL-EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhhc---------------------h-------hHH-hcC
Confidence 5789999999999999999887432 1 1111 00000 0 011 123
Q ss_pred EEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCChH-------HHHhcCCCceeeCCCCCHHHHHHHHhhcccCCC
Q 046770 305 FLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNAD-------AALIMGTVQAYPLKGLSNDDCMCLFTQHSLETR 377 (475)
Q Consensus 305 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~ 377 (475)
-++++||++.......-.+...+. ..|..||+|++.+. ..+.+....++++++++.++...++.+.+....
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS 164 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC
Confidence 478899996432112222222222 34668999887532 223334556899999999998888887764321
Q ss_pred CCCCCchHHHHHHHHHHhcCCchHHHHHHHHHh
Q 046770 378 DFSMHQPLKEIGAKIVIKCNGLPLAAKALGCLL 410 (475)
Q Consensus 378 ~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L 410 (475)
. .-.+++..-|++.+.|.--.+.-+-..|
T Consensus 165 -l---~l~~ev~~~L~~~~~~d~r~l~~~l~~l 193 (214)
T PRK06620 165 -V---TISRQIIDFLLVNLPREYSKIIEILENI 193 (214)
T ss_pred -C---CCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 1 1225677778888887766555444433
No 92
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.19 E-value=5.8e-05 Score=76.88 Aligned_cols=180 Identities=15% Similarity=0.144 Sum_probs=105.0
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccc---------------------cC
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQ---------------------CH 253 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------~~ 253 (475)
.+++|.+..+..|.+++.. . .-...+.++|+.|+||||+|+.+.+...-. .+
T Consensus 17 ~diiGq~~~v~~L~~~i~~-~------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~ 89 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRF-N------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTS 89 (451)
T ss_pred HHhcCcHHHHHHHHHHHHc-C------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCC
Confidence 4689999999999998866 2 123567899999999999999887632110 01
Q ss_pred cCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHH-hCCceEEEEEECCCCCChhhHhHhhCcCCCCCC
Q 046770 254 FDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQ-LFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAP 332 (475)
Q Consensus 254 F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 332 (475)
++. .++.......+. +...+.+.+... ..+++-++|+|++..........++..+.....
T Consensus 90 ~d~-~~i~g~~~~gid------------------~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~ 150 (451)
T PRK06305 90 LDV-LEIDGASHRGIE------------------DIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQ 150 (451)
T ss_pred Cce-EEeeccccCCHH------------------HHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCC
Confidence 111 111100000111 111111111110 125566889999976655556667777665445
Q ss_pred CcEEEEecCC-hHHH-HhcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHH
Q 046770 333 GSKIIITTRN-ADAA-LIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAK 404 (475)
Q Consensus 333 gs~ilvTtR~-~~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 404 (475)
.+.+|++|.. ..+. ........+++.+++.++....+.+.+-..+. . -..+.+..|++.++|.+--+.
T Consensus 151 ~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~-~---i~~~al~~L~~~s~gdlr~a~ 220 (451)
T PRK06305 151 HVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI-E---TSREALLPIARAAQGSLRDAE 220 (451)
T ss_pred CceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHH
Confidence 6666666643 2222 12233467899999999998888876532211 1 124567779999999765443
No 93
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.17 E-value=2.4e-05 Score=76.44 Aligned_cols=147 Identities=14% Similarity=0.151 Sum_probs=84.1
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKS 274 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~ 274 (475)
.+++|.+...+.+..++.. . .-..++.++|++|+||||+|+.+++.. ... ...++.+. .. ...++.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~-~------~~~~~lll~G~~G~GKT~la~~l~~~~--~~~---~~~i~~~~-~~-~~~i~~ 86 (316)
T PHA02544 21 DECILPAADKETFKSIVKK-G------RIPNMLLHSPSPGTGKTTVAKALCNEV--GAE---VLFVNGSD-CR-IDFVRN 86 (316)
T ss_pred HHhcCcHHHHHHHHHHHhc-C------CCCeEEEeeCcCCCCHHHHHHHHHHHh--Ccc---ceEeccCc-cc-HHHHHH
Confidence 4689999999999998865 2 234677779999999999999998742 211 22333333 12 122222
Q ss_pred HHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCC-ChhhHhHhhCcCCCCCCCcEEEEecCChHHH--HhcCC
Q 046770 275 ILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNE-NYNDWIDLSRPFQDGAPGSKIIITTRNADAA--LIMGT 351 (475)
Q Consensus 275 il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~--~~~~~ 351 (475)
.+..+.... .+.+.+-++||||+... .......+...+.....++.+|+||...... ...+.
T Consensus 87 ~l~~~~~~~---------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR 151 (316)
T PHA02544 87 RLTRFASTV---------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSR 151 (316)
T ss_pred HHHHHHHhh---------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhh
Confidence 121111100 01134558899999755 2222333433344334577888888753211 11123
Q ss_pred CceeeCCCCCHHHHHHHHh
Q 046770 352 VQAYPLKGLSNDDCMCLFT 370 (475)
Q Consensus 352 ~~~~~l~~L~~~~~~~lf~ 370 (475)
...+.+...+.++...++.
T Consensus 152 ~~~i~~~~p~~~~~~~il~ 170 (316)
T PHA02544 152 CRVIDFGVPTKEEQIEMMK 170 (316)
T ss_pred ceEEEeCCCCHHHHHHHHH
Confidence 3567777777877765544
No 94
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=6.6e-05 Score=79.22 Aligned_cols=183 Identities=14% Similarity=0.163 Sum_probs=109.7
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcc---------------------cccC
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSR---------------------VQCH 253 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~---------------------~~~~ 253 (475)
.+++|.+..++.|..++.. . .-...+.++|+.|+||||+|+.+..... ...+
T Consensus 17 ~~viGq~~~~~~L~~~i~~-~------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~ 89 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIAT-N------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRS 89 (614)
T ss_pred HHhcCcHHHHHHHHHHHHc-C------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCC
Confidence 3689999999999999876 2 2234578999999999999988766321 0112
Q ss_pred cCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCCCCC
Q 046770 254 FDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPG 333 (475)
Q Consensus 254 F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 333 (475)
|+.. .+.......+ +.++.++.++.... ..+++=++|+|++...+...+..++..+..-...
T Consensus 90 ~n~~-~ld~~~~~~v-d~Ir~li~~~~~~P----------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~ 151 (614)
T PRK14971 90 YNIH-ELDAASNNSV-DDIRNLIEQVRIPP----------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSY 151 (614)
T ss_pred CceE-EecccccCCH-HHHHHHHHHHhhCc----------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCC
Confidence 2211 1111111111 11112222211100 1234558899999887777788888877754456
Q ss_pred cEEEEec-CChHHHH-hcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHH
Q 046770 334 SKIIITT-RNADAAL-IMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKAL 406 (475)
Q Consensus 334 s~ilvTt-R~~~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 406 (475)
+.+|++| ....+.. .......+++.+++.++....+.+.+...+- . ...+.+..|++.++|..--+...
T Consensus 152 tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi-~---i~~~al~~La~~s~gdlr~al~~ 222 (614)
T PRK14971 152 AIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI-T---AEPEALNVIAQKADGGMRDALSI 222 (614)
T ss_pred eEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 6665544 4443332 3334577999999999999888876543221 1 11345677999999977644433
No 95
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=6.9e-05 Score=78.76 Aligned_cols=193 Identities=12% Similarity=0.175 Sum_probs=106.8
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKS 274 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~ 274 (475)
.+++|.+.-++.|.+++.. . .-...+.++|+.|+||||+|+.+++..--..... ..+++.-.....
T Consensus 16 ~~iiGq~~v~~~L~~~i~~-~------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-------~~~c~~c~~c~~ 81 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDT-G------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLT-------AEPCNVCPPCVE 81 (576)
T ss_pred HHccCcHHHHHHHHHHHHc-C------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-------CCCCCccHHHHH
Confidence 4689999888999998866 2 1234568999999999999999876421110000 000000011111
Q ss_pred HHHHhhc-----CCCCCCChHHHHHHHHHHh-----CCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEec-CCh
Q 046770 275 ILRSVAM-----GIVDHNDLNLLQWKLKKQL-----FGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITT-RNA 343 (475)
Q Consensus 275 il~~l~~-----~~~~~~~~~~l~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~ 343 (475)
|...-.. ........++. +.+.+.+ .+++-++|||+++..+......++..+..-...+.+|++| ...
T Consensus 82 i~~g~~~d~~eid~~s~~~v~~i-r~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~ 160 (576)
T PRK14965 82 ITEGRSVDVFEIDGASNTGVDDI-RELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPH 160 (576)
T ss_pred HhcCCCCCeeeeeccCccCHHHH-HHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChh
Confidence 1000000 00001111121 1122221 2445589999998777667777877776544556665554 444
Q ss_pred HHHH-hcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchH-HHHHH
Q 046770 344 DAAL-IMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPL-AAKAL 406 (475)
Q Consensus 344 ~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL-ai~~~ 406 (475)
.+.. ..+....+++.+++.++....+...+-..+. . -..+....|++.++|..- ++..+
T Consensus 161 kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi-~---i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 161 KVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGI-S---ISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred hhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC-C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4432 2334467889999999988888765433221 1 123556778999999664 44444
No 96
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.11 E-value=1.7e-05 Score=79.04 Aligned_cols=109 Identities=13% Similarity=0.104 Sum_probs=71.8
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKS 274 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~ 274 (475)
.++++.+...+.+...|.. . +.+.++|++|+|||++|+.+++.......|+.+.||++++.++..+++..
T Consensus 175 ~d~~i~e~~le~l~~~L~~-~---------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G 244 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI-K---------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQG 244 (459)
T ss_pred hcccCCHHHHHHHHHHHhc-C---------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcc
Confidence 4578889999999998865 1 35778999999999999999886544556788889999988876655432
Q ss_pred HHHHhhcCCCCCCCh-HHHHHHHHHHh--CCceEEEEEECCCCCCh
Q 046770 275 ILRSVAMGIVDHNDL-NLLQWKLKKQL--FGKRFLLVLDDVWNENY 317 (475)
Q Consensus 275 il~~l~~~~~~~~~~-~~l~~~l~~~l--~~kr~LlVlDdv~~~~~ 317 (475)
+ .....+-.-. ....+.+.... .+++++||||++...+.
T Consensus 245 ~----rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani 286 (459)
T PRK11331 245 Y----RPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANL 286 (459)
T ss_pred c----CCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCH
Confidence 2 1111010000 11122222222 24689999999965543
No 97
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.11 E-value=0.00017 Score=75.30 Aligned_cols=195 Identities=15% Similarity=0.069 Sum_probs=112.3
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKS 274 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~ 274 (475)
.+++|-+.-+..|..++.. . .-...+.++|+.|+||||+|+.+++..--...... ..+....+- +.
T Consensus 16 ~diiGqe~iv~~L~~~i~~-~------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~C----~~ 81 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIES-N------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSSC----KS 81 (563)
T ss_pred HHccCcHHHHHHHHHHHHc-C------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchHH----HH
Confidence 3689999889999999876 2 22356889999999999999999874211110000 001111110 11
Q ss_pred HHHHhhc-----CCCCCCChHHHHHHH---HH-HhCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCC-hH
Q 046770 275 ILRSVAM-----GIVDHNDLNLLQWKL---KK-QLFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRN-AD 344 (475)
Q Consensus 275 il~~l~~-----~~~~~~~~~~l~~~l---~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~ 344 (475)
+...-.. ........+.+.... .. -..+++-++|+|+++..+...+..++..+..-...+.+|++|.. ..
T Consensus 82 i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~k 161 (563)
T PRK06647 82 IDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHK 161 (563)
T ss_pred HHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHH
Confidence 1000000 000011222222211 11 12355668999999887777788888877754456666665543 33
Q ss_pred HHH-hcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHH
Q 046770 345 AAL-IMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALG 407 (475)
Q Consensus 345 v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 407 (475)
+.. .......+++.+++.++....+.+.+...+. .-..+....|++.++|.+..+..+.
T Consensus 162 L~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi----~id~eAl~lLa~~s~GdlR~alslL 221 (563)
T PRK06647 162 LPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI----KYEDEALKWIAYKSTGSVRDAYTLF 221 (563)
T ss_pred hHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 322 2233467899999999998888876643321 1124566779999999886555443
No 98
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.10 E-value=8e-05 Score=68.02 Aligned_cols=109 Identities=23% Similarity=0.252 Sum_probs=63.9
Q ss_pred CcccccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHH
Q 046770 191 LVHEAKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIR 270 (475)
Q Consensus 191 ~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 270 (475)
++.-..++|-+.+++.|++-...--.+ ....-+.++|..|+|||+|++.+.+....+. .+ -|.+..
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G----~pannvLL~G~rGtGKSSlVkall~~y~~~G---LR-lIev~k------ 88 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQG----LPANNVLLWGARGTGKSSLVKALLNEYADQG---LR-LIEVSK------ 88 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcC----CCCcceEEecCCCCCHHHHHHHHHHHHhhcC---ce-EEEECH------
Confidence 444567999999999987754321111 2334678899999999999999987432222 11 122222
Q ss_pred HHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCC-CCChhhHhHhhCcCC
Q 046770 271 VTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVW-NENYNDWIDLSRPFQ 328 (475)
Q Consensus 271 ~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~-~~~~~~~~~l~~~l~ 328 (475)
.+-.++..+...|+. ...+|+|++||+- +.....+..+.+.|.
T Consensus 89 -------------~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~Le 132 (249)
T PF05673_consen 89 -------------EDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLE 132 (249)
T ss_pred -------------HHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhc
Confidence 112223333333332 3569999999983 222234555555554
No 99
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.10 E-value=3.3e-05 Score=85.08 Aligned_cols=157 Identities=15% Similarity=0.098 Sum_probs=85.4
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccC----cCeEEEEEecCCCCHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCH----FDLKAWTYVSQDFDIIR 270 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~v~~~~~~~~ 270 (475)
..++||+.++++++..|.. . ....+.++|++|+|||++|..+......... ....+|.. ++..
T Consensus 173 ~~~igr~~ei~~~~~~l~r-~-------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~ 239 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSR-R-------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGA 239 (852)
T ss_pred CcCCCcHHHHHHHHHHHhc-C-------CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHH
Confidence 3589999999999999876 2 2234568999999999999998774211110 12233321 1111
Q ss_pred HHHHHHHHhhcCCCCCCChHHHHHHHHHHhC-CceEEEEEECCCCCC-------hhhHhHhhCcCCCCCCCcEEEEecCC
Q 046770 271 VTKSILRSVAMGIVDHNDLNLLQWKLKKQLF-GKRFLLVLDDVWNEN-------YNDWIDLSRPFQDGAPGSKIIITTRN 342 (475)
Q Consensus 271 ~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~-~kr~LlVlDdv~~~~-------~~~~~~l~~~l~~~~~gs~ilvTtR~ 342 (475)
++ ........-...+...+...-. +++.+|+||+++... ..+-..++.+.... ..-.+|-+|..
T Consensus 240 ----l~---a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~-g~i~~IgaTt~ 311 (852)
T TIGR03346 240 ----LI---AGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR-GELHCIGATTL 311 (852)
T ss_pred ----Hh---hcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc-CceEEEEeCcH
Confidence 11 0100011111222223332222 468999999996321 01122333333222 22455555555
Q ss_pred hHHHH-------hcCCCceeeCCCCCHHHHHHHHhhc
Q 046770 343 ADAAL-------IMGTVQAYPLKGLSNDDCMCLFTQH 372 (475)
Q Consensus 343 ~~v~~-------~~~~~~~~~l~~L~~~~~~~lf~~~ 372 (475)
++... .......+.+...+.++...++...
T Consensus 312 ~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 312 DEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred HHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH
Confidence 44322 1224466889999999999988754
No 100
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.09 E-value=0.00012 Score=74.16 Aligned_cols=183 Identities=13% Similarity=0.073 Sum_probs=102.3
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCc
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGK 303 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 303 (475)
...+.|+|+.|+|||+|++.+++.......=..+++++. .++...+...+... ..... .+.+..
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~~~----~~~~~~- 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNN-----KMEEF----KEKYRS- 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----CHHHH----HHHHHh-
Confidence 356889999999999999999985322111123445543 33444555544322 22222 223322
Q ss_pred eEEEEEECCCCCChhh--HhHhhCcCCC-CCCCcEEEEecCCh-HH--------HHhcCCCceeeCCCCCHHHHHHHHhh
Q 046770 304 RFLLVLDDVWNENYND--WIDLSRPFQD-GAPGSKIIITTRNA-DA--------ALIMGTVQAYPLKGLSNDDCMCLFTQ 371 (475)
Q Consensus 304 r~LlVlDdv~~~~~~~--~~~l~~~l~~-~~~gs~ilvTtR~~-~v--------~~~~~~~~~~~l~~L~~~~~~~lf~~ 371 (475)
.-+|+|||++...... ...+...+.. ...+..+|+|+... .. ...+.....+.+++.+.++-..++.+
T Consensus 200 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~ 279 (405)
T TIGR00362 200 VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQK 279 (405)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHH
Confidence 3489999996432111 1223322221 12355678877642 11 11222335689999999999999998
Q ss_pred cccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHh-------cCCCChhHHHHHHhcc
Q 046770 372 HSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCLL-------HGKYDPSDWESVLNSR 426 (475)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L-------~~~~~~~~w~~~l~~~ 426 (475)
.+..... . -.+++...|++.+.|..-.+.-+-..| ....+.+..+.++...
T Consensus 280 ~~~~~~~-~---l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 280 KAEEEGL-E---LPDEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEALKDL 337 (405)
T ss_pred HHHHcCC-C---CCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 8754321 1 125677778888888776544322222 1224556677777653
No 101
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.07 E-value=2.2e-05 Score=84.45 Aligned_cols=155 Identities=21% Similarity=0.207 Sum_probs=87.6
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccc---cC-cCeEEEEEecCCCCHHHH
Q 046770 196 KVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQ---CH-FDLKAWTYVSQDFDIIRV 271 (475)
Q Consensus 196 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---~~-F~~~~wv~v~~~~~~~~~ 271 (475)
.++||+.+++++++.|.. .. ..-+.++|++|+|||++|+.++...... .. .++.+|.. ++.
T Consensus 187 ~liGR~~ei~~~i~iL~r-~~-------~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~-- 251 (758)
T PRK11034 187 PLIGREKELERAIQVLCR-RR-------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIG-- 251 (758)
T ss_pred cCcCCCHHHHHHHHHHhc-cC-------CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHH--
Confidence 589999999999998876 21 2334689999999999999988632111 11 13444421 111
Q ss_pred HHHHHHHhhcCCCCCCChHHHHHHHHHHh-CCceEEEEEECCCCC--------ChhhHhHhhCcCCCCCCCcEEEEecCC
Q 046770 272 TKSILRSVAMGIVDHNDLNLLQWKLKKQL-FGKRFLLVLDDVWNE--------NYNDWIDLSRPFQDGAPGSKIIITTRN 342 (475)
Q Consensus 272 l~~il~~l~~~~~~~~~~~~l~~~l~~~l-~~kr~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~gs~ilvTtR~ 342 (475)
.++ .+.. ...+.+.....+.+.+ +.++.+|+||+++.- ...+...++.++... ..-++|-+|..
T Consensus 252 --~ll---aG~~-~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~ 324 (758)
T PRK11034 252 --SLL---AGTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTY 324 (758)
T ss_pred --HHh---cccc-hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCCh
Confidence 111 1111 1112222222222222 345779999999631 112233333333322 23456666665
Q ss_pred hHHHH-------hcCCCceeeCCCCCHHHHHHHHhhc
Q 046770 343 ADAAL-------IMGTVQAYPLKGLSNDDCMCLFTQH 372 (475)
Q Consensus 343 ~~v~~-------~~~~~~~~~l~~L~~~~~~~lf~~~ 372 (475)
++... .......+.+++.+.++...++...
T Consensus 325 ~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_pred HHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHH
Confidence 44322 2234568999999999999999854
No 102
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.06 E-value=0.00021 Score=74.77 Aligned_cols=194 Identities=14% Similarity=0.141 Sum_probs=109.1
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKS 274 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~ 274 (475)
.+++|.+.-++.|.+++.. . .-.....++|+.|+||||+|+.+....--...-+ ..+.+.-.....
T Consensus 16 ~~viGq~~v~~~L~~~i~~-~------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~ 81 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQ-G------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKA 81 (559)
T ss_pred HhccCcHHHHHHHHHHHHc-C------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHH
Confidence 4689999999999999876 2 2234567899999999999998875321100000 001111111111
Q ss_pred HHHHhhcC-----CCCCCChHHHHHHHHHH-----hCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEec-CCh
Q 046770 275 ILRSVAMG-----IVDHNDLNLLQWKLKKQ-----LFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITT-RNA 343 (475)
Q Consensus 275 il~~l~~~-----~~~~~~~~~l~~~l~~~-----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~ 343 (475)
+....... .......+... .+.+. ..++.-++|||+++..+...+..++..+......+.+|++| ...
T Consensus 82 i~~g~~~dv~eidaas~~~vd~ir-~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ 160 (559)
T PRK05563 82 ITNGSLMDVIEIDAASNNGVDEIR-DIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPH 160 (559)
T ss_pred HhcCCCCCeEEeeccccCCHHHHH-HHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChh
Confidence 11100000 00011222222 22222 13556688999998777667778877776544455555544 433
Q ss_pred HHHH-hcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHH
Q 046770 344 DAAL-IMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALG 407 (475)
Q Consensus 344 ~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 407 (475)
.+.. ..+....+.+.+++.++....+...+-..+- .. ..+....|++.++|.+..+..+.
T Consensus 161 ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi-~i---~~~al~~ia~~s~G~~R~al~~L 221 (559)
T PRK05563 161 KIPATILSRCQRFDFKRISVEDIVERLKYILDKEGI-EY---EDEALRLIARAAEGGMRDALSIL 221 (559)
T ss_pred hCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 3222 2233467889999999998888876533221 11 13556778889998876554433
No 103
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.04 E-value=6.7e-05 Score=71.81 Aligned_cols=133 Identities=12% Similarity=0.041 Sum_probs=72.5
Q ss_pred EEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceE
Q 046770 226 VVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRF 305 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~ 305 (475)
-+.++|++|+|||++|+.++.............|+.++. .+++..+.+.. .......+.+. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~--------~~l~~~~~g~~-----~~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR--------DDLVGQYIGHT-----APKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH--------HHHhHhhcccc-----hHHHHHHHHHc---cCc
Confidence 478999999999999977765321111111112444442 11222222211 11222223322 235
Q ss_pred EEEEECCCCC---------ChhhHhHhhCcCCCCCCCcEEEEecCChHHHHhcC--------CCceeeCCCCCHHHHHHH
Q 046770 306 LLVLDDVWNE---------NYNDWIDLSRPFQDGAPGSKIIITTRNADAALIMG--------TVQAYPLKGLSNDDCMCL 368 (475)
Q Consensus 306 LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~--------~~~~~~l~~L~~~~~~~l 368 (475)
+|+||++... ....+..+...+.....+.+||+++.......... -...+++++++.++...+
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8999999632 12223445555544445667777776543322211 135688999999999999
Q ss_pred Hhhccc
Q 046770 369 FTQHSL 374 (475)
Q Consensus 369 f~~~~~ 374 (475)
+...+-
T Consensus 204 ~~~~l~ 209 (284)
T TIGR02880 204 AGLMLK 209 (284)
T ss_pred HHHHHH
Confidence 887653
No 104
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.03 E-value=7.2e-05 Score=74.96 Aligned_cols=182 Identities=14% Similarity=0.092 Sum_probs=96.3
Q ss_pred cccccccchhHHHHHHHHhcCCCC-----CCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCH
Q 046770 194 EAKVYGRSKEREEIVELLLKEDGT-----SHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDI 268 (475)
Q Consensus 194 ~~~~vGR~~e~~~l~~~L~~~~~~-----~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~ 268 (475)
..++.|++..+++|.+.+...-.. .-.-...+-|.++|++|+|||++|+.+++.. ... |+.++.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~--~~~-----~i~v~~---- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET--NAT-----FIRVVG---- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh--CCC-----EEEeeh----
Confidence 346899999999998866320000 0000234568899999999999999999842 222 222221
Q ss_pred HHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCC-----------Chhh---HhHhhCcCCC--CCC
Q 046770 269 IRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNE-----------NYND---WIDLSRPFQD--GAP 332 (475)
Q Consensus 269 ~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~-----------~~~~---~~~l~~~l~~--~~~ 332 (475)
.++ .....+ .....+...+...-...+.+|+|||+... +... ...++..+.. ...
T Consensus 199 ~~l----~~~~~g-----~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~ 269 (389)
T PRK03992 199 SEL----VQKFIG-----EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRG 269 (389)
T ss_pred HHH----hHhhcc-----chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCC
Confidence 111 111110 11111111222222345789999999532 1111 1122222221 123
Q ss_pred CcEEEEecCChHHHH--hcC---CCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCch
Q 046770 333 GSKIIITTRNADAAL--IMG---TVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLP 400 (475)
Q Consensus 333 gs~ilvTtR~~~v~~--~~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P 400 (475)
+..||.||...+... ... -...+.+.+.+.++-.++|..+.....- ...-.+ ..+++.+.|.-
T Consensus 270 ~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~-~~~~~~----~~la~~t~g~s 337 (389)
T PRK03992 270 NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL-ADDVDL----EELAELTEGAS 337 (389)
T ss_pred CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCC-CCcCCH----HHHHHHcCCCC
Confidence 567787887643221 111 2356889999999999999977643221 111223 44677777753
No 105
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.03 E-value=6.5e-05 Score=82.57 Aligned_cols=156 Identities=14% Similarity=0.064 Sum_probs=83.6
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCccccc---C-cCeEEE-EEecCCCCHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQC---H-FDLKAW-TYVSQDFDII 269 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~---~-F~~~~w-v~v~~~~~~~ 269 (475)
..++||+.+++++++.|.. .....+.++|++|+|||+||+.+........ . ....+| +..+.
T Consensus 178 ~~vigr~~ei~~~i~iL~r--------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~----- 244 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQR--------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA----- 244 (857)
T ss_pred CcCCCCHHHHHHHHHHHhc--------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh-----
Confidence 3599999999999999976 2234566999999999999999887421110 0 122222 22221
Q ss_pred HHHHHHHHHhhcCCCCCCChHHHHHHHHHHh-CCceEEEEEECCCCCCh-------hhHhHhhCcCCCCCCCcEEEEecC
Q 046770 270 RVTKSILRSVAMGIVDHNDLNLLQWKLKKQL-FGKRFLLVLDDVWNENY-------NDWIDLSRPFQDGAPGSKIIITTR 341 (475)
Q Consensus 270 ~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l-~~kr~LlVlDdv~~~~~-------~~~~~l~~~l~~~~~gs~ilvTtR 341 (475)
++ .+......-...+...+.+.- .+++.+|++|+++.... .+-..++.+.... ..-++|-+|.
T Consensus 245 -l~-------ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~-g~l~~IgaTt 315 (857)
T PRK10865 245 -LV-------AGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR-GELHCVGATT 315 (857)
T ss_pred -hh-------hccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc-CCCeEEEcCC
Confidence 10 000011111122222232221 25689999999964310 1122333333222 2346666666
Q ss_pred ChHHHHh-------cCCCceeeCCCCCHHHHHHHHhhc
Q 046770 342 NADAALI-------MGTVQAYPLKGLSNDDCMCLFTQH 372 (475)
Q Consensus 342 ~~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~ 372 (475)
..+.... ......+.+...+.++...++...
T Consensus 316 ~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l 353 (857)
T PRK10865 316 LDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGL 353 (857)
T ss_pred CHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHH
Confidence 5543211 123345667667888888887654
No 106
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.02 E-value=0.0004 Score=72.15 Aligned_cols=181 Identities=13% Similarity=0.083 Sum_probs=100.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCce
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKR 304 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr 304 (475)
..+.|+|..|+|||.|++.+++.......-..+.+++. .+++..+...+... ..+ .+++.+.. .
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~~-----~~~----~f~~~y~~-~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRDG-----KGD----SFRRRYRE-M 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHhc-----cHH----HHHHHhhc-C
Confidence 45899999999999999999984321111122344433 33444444443221 112 23333322 2
Q ss_pred EEEEEECCCCCCh-hhHh-HhhCcCCC-CCCCcEEEEecCCh---------HHHHhcCCCceeeCCCCCHHHHHHHHhhc
Q 046770 305 FLLVLDDVWNENY-NDWI-DLSRPFQD-GAPGSKIIITTRNA---------DAALIMGTVQAYPLKGLSNDDCMCLFTQH 372 (475)
Q Consensus 305 ~LlVlDdv~~~~~-~~~~-~l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 372 (475)
=+|||||+..... ..|. .+...+.. ...+..||+||+.. .+...+...-++.|.+.+.+.-..++.++
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHH
Confidence 4889999965422 2222 23322221 12356788888752 22233345678999999999999999988
Q ss_pred ccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHhc------C-CCChhHHHHHHhc
Q 046770 373 SLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCLLH------G-KYDPSDWESVLNS 425 (475)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~------~-~~~~~~w~~~l~~ 425 (475)
+....- . .-.++..-|++.+.+..-.+.-+...|. . ..+...-+.++..
T Consensus 459 a~~r~l-~---l~~eVi~yLa~r~~rnvR~LegaL~rL~a~a~~~~~~itl~la~~vL~~ 514 (617)
T PRK14086 459 AVQEQL-N---APPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLRD 514 (617)
T ss_pred HHhcCC-C---CCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Confidence 754321 1 2246677777777766554443333221 1 2444555556654
No 107
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.00 E-value=0.00019 Score=70.01 Aligned_cols=97 Identities=16% Similarity=0.204 Sum_probs=66.9
Q ss_pred CceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCChHH-H-HhcCCCceeeCCCCCHHHHHHHHhhcccCCCCC
Q 046770 302 GKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNADA-A-LIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDF 379 (475)
Q Consensus 302 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v-~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 379 (475)
+++=++|||+++..+......++..+..-..++.+|+||.+... . ...+....+.+.+++.+++.+.+.......
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~--- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPES--- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccC---
Confidence 34445678999888888888888888755567777777776432 2 233345679999999999999998653111
Q ss_pred CCCchHHHHHHHHHHhcCCchHHHHHH
Q 046770 380 SMHQPLKEIGAKIVIKCNGLPLAAKAL 406 (475)
Q Consensus 380 ~~~~~~~~~~~~I~~~c~G~PLai~~~ 406 (475)
. .+.+..++..++|.|+.+..+
T Consensus 182 --~---~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 --D---ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred --C---hHHHHHHHHHcCCCHHHHHHH
Confidence 1 233456788999999865544
No 108
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.99 E-value=0.00014 Score=74.05 Aligned_cols=182 Identities=17% Similarity=0.106 Sum_probs=101.6
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcCcccccCcC-eEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFD-LKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFG 302 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 302 (475)
..-+.|+|++|+|||+|++.+++... +.+.. .+.|++. .+++..+...+... .... +.+.+..
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~-~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~~----f~~~~~~ 193 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVV-QNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLNE----FREKYRK 193 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH-HhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHHH----HHHHHHh
Confidence 34589999999999999999998532 22222 3455543 34555555555322 1222 2233333
Q ss_pred ceEEEEEECCCCCC-hhhH-hHhhCcCCC-CCCCcEEEEecC-ChHHH--------HhcCCCceeeCCCCCHHHHHHHHh
Q 046770 303 KRFLLVLDDVWNEN-YNDW-IDLSRPFQD-GAPGSKIIITTR-NADAA--------LIMGTVQAYPLKGLSNDDCMCLFT 370 (475)
Q Consensus 303 kr~LlVlDdv~~~~-~~~~-~~l~~~l~~-~~~gs~ilvTtR-~~~v~--------~~~~~~~~~~l~~L~~~~~~~lf~ 370 (475)
+.-+|+|||++... ...+ ..+...+.. ...|..||+||. .+.-. ..+.....+.+++.+.+.-..++.
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~ 273 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIAR 273 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHH
Confidence 45589999996421 1111 222222221 123457888875 32211 122334578899999999999999
Q ss_pred hcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHh-------cCCCChhHHHHHHhc
Q 046770 371 QHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCLL-------HGKYDPSDWESVLNS 425 (475)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L-------~~~~~~~~w~~~l~~ 425 (475)
+.+..... . -.+++...|++.+.|..-.+.-+-..| ....+......++..
T Consensus 274 ~~~~~~~~-~---l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~ 331 (440)
T PRK14088 274 KMLEIEHG-E---LPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKD 331 (440)
T ss_pred HHHHhcCC-C---CCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 87643221 1 124667778888887654444332222 112455556666654
No 109
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.94 E-value=0.00041 Score=63.30 Aligned_cols=179 Identities=13% Similarity=0.134 Sum_probs=108.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEe-cCCCCHHHHHHHHHHHhhcCCCCCCChHH----HHHHHHH
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYV-SQDFDIIRVTKSILRSVAMGIVDHNDLNL----LQWKLKK 298 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v-~~~~~~~~~l~~il~~l~~~~~~~~~~~~----l~~~l~~ 298 (475)
-.++.++|.-|+|||++.+.......-. +... +.+ ........+...++..+... ....... ..+.|..
T Consensus 51 qg~~~vtGevGsGKTv~~Ral~~s~~~d---~~~~-v~i~~~~~s~~~~~~ai~~~l~~~--p~~~~~~~~e~~~~~L~a 124 (269)
T COG3267 51 QGILAVTGEVGSGKTVLRRALLASLNED---QVAV-VVIDKPTLSDATLLEAIVADLESQ--PKVNVNAVLEQIDRELAA 124 (269)
T ss_pred CceEEEEecCCCchhHHHHHHHHhcCCC---ceEE-EEecCcchhHHHHHHHHHHHhccC--ccchhHHHHHHHHHHHHH
Confidence 3689999999999999999554422111 1112 333 34457778888888888773 2333333 3333333
Q ss_pred Hh-CCce-EEEEEECCCCCChhhHhHhhCcCCCCCCC---cEEEEecCC--------hHHHHhcCCCce-eeCCCCCHHH
Q 046770 299 QL-FGKR-FLLVLDDVWNENYNDWIDLSRPFQDGAPG---SKIIITTRN--------ADAALIMGTVQA-YPLKGLSNDD 364 (475)
Q Consensus 299 ~l-~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~~~g---s~ilvTtR~--------~~v~~~~~~~~~-~~l~~L~~~~ 364 (475)
.. ++++ ..+++||.+.......+.++........+ -+|++.... ......-..... |++.|++.++
T Consensus 125 l~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~ 204 (269)
T COG3267 125 LVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAE 204 (269)
T ss_pred HHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHH
Confidence 33 5777 89999999876665665554433311112 234443322 111111112233 8999999999
Q ss_pred HHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHHH
Q 046770 365 CMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCL 409 (475)
Q Consensus 365 ~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~ 409 (475)
...++..+..+... ..+--..+....|..+..|.|.+|..++..
T Consensus 205 t~~yl~~~Le~a~~-~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 205 TGLYLRHRLEGAGL-PEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHHhccCC-CcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 99998887655432 222223456677999999999999877654
No 110
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.94 E-value=6.3e-05 Score=69.35 Aligned_cols=183 Identities=17% Similarity=0.154 Sum_probs=102.4
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKS 274 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~ 274 (475)
.+|+|-++-+++|.=.+.. ....+ ..+--|.++|++|.||||||.-+++...+. +.. .......-..-+..
T Consensus 26 ~efiGQ~~vk~~L~ifI~A-Ak~r~--e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--~k~----tsGp~leK~gDlaa 96 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKA-AKKRG--EALDHVLLFGPPGLGKTTLAHIIANELGVN--LKI----TSGPALEKPGDLAA 96 (332)
T ss_pred HHhcChHHHHHHHHHHHHH-HHhcC--CCcCeEEeeCCCCCcHHHHHHHHHHHhcCC--eEe----cccccccChhhHHH
Confidence 4799988777777655544 22222 556789999999999999999999953322 211 11110110111122
Q ss_pred HHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCC--------CCCCCc-----------E
Q 046770 275 ILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQ--------DGAPGS-----------K 335 (475)
Q Consensus 275 il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~--------~~~~gs-----------~ 335 (475)
++..+. ..=++++|.++..+...-+-+..++. ..++++ -
T Consensus 97 iLt~Le----------------------~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTL 154 (332)
T COG2255 97 ILTNLE----------------------EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTL 154 (332)
T ss_pred HHhcCC----------------------cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeE
Confidence 222221 12356667776544322222222211 112222 2
Q ss_pred EEEecCChHHHHhcC--CCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 046770 336 IIITTRNADAALIMG--TVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCLLHG 412 (475)
Q Consensus 336 ilvTtR~~~v~~~~~--~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~ 412 (475)
|=.|||.-.+...+. -.-+.+++--+.+|..++..+.+..-. -+-.++.+.+|+++..|-|--..-+.+..+.
T Consensus 155 IGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~----i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRD 229 (332)
T COG2255 155 IGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILG----IEIDEEAALEIARRSRGTPRIANRLLRRVRD 229 (332)
T ss_pred eeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhC----CCCChHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 445888644332222 224567888889999999887764322 1223466788999999999877666665543
No 111
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.93 E-value=0.00063 Score=65.95 Aligned_cols=197 Identities=15% Similarity=0.108 Sum_probs=111.9
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCccc-------------ccCcCeEEEEEe
Q 046770 196 KVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRV-------------QCHFDLKAWTYV 262 (475)
Q Consensus 196 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-------------~~~F~~~~wv~v 262 (475)
+++|-+.-++.+...+.. . .-.....++|+.|+||+++|..+.+..-- ...+.-..|+.-
T Consensus 5 ~iiGq~~~~~~L~~~i~~-~------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p 77 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQ-N------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEP 77 (314)
T ss_pred HhCCHHHHHHHHHHHHHh-C------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEec
Confidence 688999989999998876 2 22368899999999999999777553110 011112233321
Q ss_pred cCCCCHHHHHHHHHHHhh--cCCCCCCChHHHHHHHHHHh-----CCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcE
Q 046770 263 SQDFDIIRVTKSILRSVA--MGIVDHNDLNLLQWKLKKQL-----FGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSK 335 (475)
Q Consensus 263 ~~~~~~~~~l~~il~~l~--~~~~~~~~~~~l~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 335 (475)
....+-..+-..-+...+ ......-..++ .+.+.+.+ .+.+-++|+|++...+......++..+..-. .+.
T Consensus 78 ~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~ 155 (314)
T PRK07399 78 TYQHQGKLITASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGT 155 (314)
T ss_pred cccccccccchhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCe
Confidence 100000000001111111 01011112222 23344443 3556699999998777777777877776433 445
Q ss_pred EEEecCCh-HHH-HhcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHH
Q 046770 336 IIITTRNA-DAA-LIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGC 408 (475)
Q Consensus 336 ilvTtR~~-~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~ 408 (475)
+|++|.+. .+. ...+....+++.+++.++..+.+.+...... . ......++..++|.|..+..+..
T Consensus 156 fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~---~----~~~~~~l~~~a~Gs~~~al~~l~ 223 (314)
T PRK07399 156 LILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI---L----NINFPELLALAQGSPGAAIANIE 223 (314)
T ss_pred EEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc---c----hhHHHHHHHHcCCCHHHHHHHHH
Confidence 55555443 222 2334457899999999999999997642111 0 11135688999999987665443
No 112
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.92 E-value=1.4e-05 Score=66.92 Aligned_cols=22 Identities=36% Similarity=0.401 Sum_probs=19.8
Q ss_pred EEEEccCCCcHHHHHHHHHcCc
Q 046770 227 VSIIGMGGLGKTTLAQLVYNDS 248 (475)
Q Consensus 227 v~I~G~gGiGKTtLA~~v~~~~ 248 (475)
|.|+|++|+|||++|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5799999999999999999853
No 113
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.91 E-value=0.00023 Score=72.32 Aligned_cols=155 Identities=14% Similarity=0.126 Sum_probs=87.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCc
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGK 303 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 303 (475)
..-+.|+|+.|+|||+|++.+++... ..-..+++++ ...+...+...+... .. ..++..+. .
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~--~~~~~v~yi~------~~~f~~~~~~~l~~~-----~~----~~f~~~~~-~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALR--ESGGKILYVR------SELFTEHLVSAIRSG-----EM----QRFRQFYR-N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHH--HcCCCEEEee------HHHHHHHHHHHHhcc-----hH----HHHHHHcc-c
Confidence 35678999999999999999998432 2122234443 233444444444321 11 22333333 3
Q ss_pred eEEEEEECCCCCChhh--HhHhhCcCCC-CCCCcEEEEecCCh-H--------HHHhcCCCceeeCCCCCHHHHHHHHhh
Q 046770 304 RFLLVLDDVWNENYND--WIDLSRPFQD-GAPGSKIIITTRNA-D--------AALIMGTVQAYPLKGLSNDDCMCLFTQ 371 (475)
Q Consensus 304 r~LlVlDdv~~~~~~~--~~~l~~~l~~-~~~gs~ilvTtR~~-~--------v~~~~~~~~~~~l~~L~~~~~~~lf~~ 371 (475)
.-+|+|||+....... .+.+...+.. ...|..||+||... . +...+.....+.+.+++.++...++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 4488899996532111 1222222211 11355788888642 1 122233446889999999999999998
Q ss_pred cccCCCCCCCCchHHHHHHHHHHhcCCch
Q 046770 372 HSLETRDFSMHQPLKEIGAKIVIKCNGLP 400 (475)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~I~~~c~G~P 400 (475)
.+-...- .. ..++..-|+..+.|.-
T Consensus 283 k~~~~~~-~l---~~evl~~la~~~~~di 307 (445)
T PRK12422 283 KAEALSI-RI---EETALDFLIEALSSNV 307 (445)
T ss_pred HHHHcCC-CC---CHHHHHHHHHhcCCCH
Confidence 7744321 11 2455566777666543
No 114
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.91 E-value=0.00022 Score=71.60 Aligned_cols=119 Identities=19% Similarity=0.172 Sum_probs=75.7
Q ss_pred EEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceE
Q 046770 226 VVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRF 305 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~ 305 (475)
++.|.|+.++||||+++.+.... ... .++++..+......-+.+.+. .+...-..++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~--~~~---~iy~~~~d~~~~~~~l~d~~~-----------------~~~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGL--LEE---IIYINFDDLRLDRIELLDLLR-----------------AYIELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhC--Ccc---eEEEEecchhcchhhHHHHHH-----------------HHHHhhccCCc
Confidence 99999999999999997776632 111 445444332211111111111 11111122778
Q ss_pred EEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCChHHHH------hcCCCceeeCCCCCHHHHHHHH
Q 046770 306 LLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNADAAL------IMGTVQAYPLKGLSNDDCMCLF 369 (475)
Q Consensus 306 LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~------~~~~~~~~~l~~L~~~~~~~lf 369 (475)
+|+||.|+.. ..|...+..+.+.... +|++|+.+..... ..+....+.+.||+..|...+.
T Consensus 97 yifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 97 YIFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred eEEEecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 9999999654 5899888888776655 8888888754432 2234567899999999887643
No 115
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.89 E-value=0.00014 Score=74.62 Aligned_cols=181 Identities=13% Similarity=0.063 Sum_probs=103.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcCcccccCc--CeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYNDSRVQCHF--DLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLF 301 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 301 (475)
..-+.|+|++|+|||+|++.+.+.. ...+ ..+.+++.. ++...+...+... .... +.+.+.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~--~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~~~~----~~~~~~ 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYI--LEKNPNAKVVYVTSE------KFTNDFVNALRNN-----TMEE----FKEKYR 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHhCCCCeEEEEEHH------HHHHHHHHHHHcC-----cHHH----HHHHHh
Confidence 3568999999999999999999853 3332 234455432 3334444444221 1222 233333
Q ss_pred CceEEEEEECCCCCChh--hHhHhhCcCCC-CCCCcEEEEecCChH---------HHHhcCCCceeeCCCCCHHHHHHHH
Q 046770 302 GKRFLLVLDDVWNENYN--DWIDLSRPFQD-GAPGSKIIITTRNAD---------AALIMGTVQAYPLKGLSNDDCMCLF 369 (475)
Q Consensus 302 ~kr~LlVlDdv~~~~~~--~~~~l~~~l~~-~~~gs~ilvTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf 369 (475)
+.-+|||||++..... ....+...+.. ...|..||+||.... +...+....++++++.+.++-..++
T Consensus 211 -~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il 289 (450)
T PRK00149 211 -SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAIL 289 (450)
T ss_pred -cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHH
Confidence 2448999999643211 11223322221 113456777776531 1222334467999999999999999
Q ss_pred hhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHh-------cCCCChhHHHHHHhcc
Q 046770 370 TQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCLL-------HGKYDPSDWESVLNSR 426 (475)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L-------~~~~~~~~w~~~l~~~ 426 (475)
.+.+..... .-.+++...|++.+.|..-.+.-+-..| ....+....+.+++..
T Consensus 290 ~~~~~~~~~----~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 290 KKKAEEEGI----DLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHHHHcCC----CCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 988754221 1224677789999998876544332222 1224566677777653
No 116
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.86 E-value=0.00061 Score=74.51 Aligned_cols=165 Identities=18% Similarity=0.172 Sum_probs=85.1
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKS 274 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~ 274 (475)
.+++|.++-++.|.+++........ ..-+++.++|++|+|||++|+.+++.. ...|- -++++...+..++..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~--~~~~~lll~GppG~GKT~lAk~iA~~l--~~~~~---~i~~~~~~~~~~i~g- 391 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGK--MKGPILCLVGPPGVGKTSLGKSIAKAL--NRKFV---RFSLGGVRDEAEIRG- 391 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcC--CCCceEEEECCCCCCHHHHHHHHHHHh--cCCeE---EEeCCCcccHHHHcC-
Confidence 4588988888888887643111011 223579999999999999999999842 32331 122232222222110
Q ss_pred HHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCChh----hHhHhhCcC--------CCC-------CCCcE
Q 046770 275 ILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYN----DWIDLSRPF--------QDG-------APGSK 335 (475)
Q Consensus 275 il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~----~~~~l~~~l--------~~~-------~~gs~ 335 (475)
. ...........+...+.... .++-+|+||+++..... .-..++..+ .+. ..+.-
T Consensus 392 ---~--~~~~~g~~~g~i~~~l~~~~-~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~ 465 (775)
T TIGR00763 392 ---H--RRTYVGAMPGRIIQGLKKAK-TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVI 465 (775)
T ss_pred ---C--CCceeCCCCchHHHHHHHhC-cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEE
Confidence 0 00011111223333444332 33448899999643211 111222211 111 12344
Q ss_pred EEEecCChHH--HHhcCCCceeeCCCCCHHHHHHHHhhcc
Q 046770 336 IIITTRNADA--ALIMGTVQAYPLKGLSNDDCMCLFTQHS 373 (475)
Q Consensus 336 ilvTtR~~~v--~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 373 (475)
+|.||..... .........+++.+++.++-..++..+.
T Consensus 466 ~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 466 FIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 5556654321 1222344678999999988888876543
No 117
>PRK08116 hypothetical protein; Validated
Probab=97.83 E-value=6.2e-05 Score=71.31 Aligned_cols=104 Identities=22% Similarity=0.226 Sum_probs=58.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCce
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKR 304 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr 304 (475)
..+.|+|..|+|||.||..+++... ..-..+++++ ..+++..+...+... ...+... +.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~--~~~~~v~~~~------~~~ll~~i~~~~~~~--~~~~~~~----~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI--EKGVPVIFVN------FPQLLNRIKSTYKSS--GKEDENE----IIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEE------HHHHHHHHHHHHhcc--ccccHHH----HHHHhcCCC
Confidence 3578999999999999999999532 2223345554 334455554443321 1112222 233333333
Q ss_pred EEEEEECCCCCChhhHhH--hhCcCCC-CCCCcEEEEecCCh
Q 046770 305 FLLVLDDVWNENYNDWID--LSRPFQD-GAPGSKIIITTRNA 343 (475)
Q Consensus 305 ~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~ilvTtR~~ 343 (475)
||||||+.......|.. +...+.. -..+..+|+||...
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 89999996544445543 2222221 12456789998763
No 118
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.82 E-value=0.00012 Score=61.55 Aligned_cols=88 Identities=18% Similarity=0.017 Sum_probs=46.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCc-
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGK- 303 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k- 303 (475)
..+.|+|++|+||||+++.++...... .....++..+........... ....... ............+.......
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP--GGGVIYIDGEDILEEVLDQLL-LIIVGGK-KASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC--CCCEEEECCEEccccCHHHHH-hhhhhcc-CCCCCHHHHHHHHHHHHHhcC
Confidence 478999999999999999998853222 123455544443322111111 0111111 11222222233344444333
Q ss_pred eEEEEEECCCCCC
Q 046770 304 RFLLVLDDVWNEN 316 (475)
Q Consensus 304 r~LlVlDdv~~~~ 316 (475)
..+|++|++....
T Consensus 79 ~~viiiDei~~~~ 91 (148)
T smart00382 79 PDVLILDEITSLL 91 (148)
T ss_pred CCEEEEECCcccC
Confidence 4899999997653
No 119
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.81 E-value=0.00039 Score=75.47 Aligned_cols=167 Identities=17% Similarity=0.231 Sum_probs=90.1
Q ss_pred cccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHH
Q 046770 194 EAKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTK 273 (475)
Q Consensus 194 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~ 273 (475)
+.+.+|.++-++.|+++|........ ..-.++.++|++|+||||+|+.++.. ....| .-++.+...+..++..
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~--~~g~~i~l~GppG~GKTtl~~~ia~~--l~~~~---~~i~~~~~~d~~~i~g 393 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNK--IKGPILCLVGPPGVGKTSLGQSIAKA--TGRKY---VRMALGGVRDEAEIRG 393 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhccc--CCCceEEEECCCCCCHHHHHHHHHHH--hCCCE---EEEEcCCCCCHHHhcc
Confidence 44689999999999988864121111 23357999999999999999999873 22222 1123333333222211
Q ss_pred HHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCChhh----HhHhhCcCCC---------------CCCCc
Q 046770 274 SILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYND----WIDLSRPFQD---------------GAPGS 334 (475)
Q Consensus 274 ~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~----~~~l~~~l~~---------------~~~gs 334 (475)
.- ... .+. ....+...+... ...+-+|+||++....... ...++..+.. .-...
T Consensus 394 ~~-~~~----~g~-~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 394 HR-RTY----IGS-MPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred ch-hcc----CCC-CCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCce
Confidence 10 000 011 112233334332 2234578999996433211 2333333321 11344
Q ss_pred EEEEecCChHHHH-hcCCCceeeCCCCCHHHHHHHHhhccc
Q 046770 335 KIIITTRNADAAL-IMGTVQAYPLKGLSNDDCMCLFTQHSL 374 (475)
Q Consensus 335 ~ilvTtR~~~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~ 374 (475)
-+|.|+.+..+.. ..+...++.+.+++.++-.++.+++..
T Consensus 467 ~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 467 MFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred EEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhhh
Confidence 5566665432221 223446789999999999888877653
No 120
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.81 E-value=0.001 Score=65.60 Aligned_cols=207 Identities=15% Similarity=0.123 Sum_probs=123.2
Q ss_pred cchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHH-HHHHcCcccccCcCeEEEEEecCC---CCHHHHHHHH
Q 046770 200 RSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLA-QLVYNDSRVQCHFDLKAWTYVSQD---FDIIRVTKSI 275 (475)
Q Consensus 200 R~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~~~wv~v~~~---~~~~~~l~~i 275 (475)
|.+..++|..||.. ..-..|.|.||.|+||+.|+ .++..+.+. +..+.|.+- -+...++..+
T Consensus 1 R~e~~~~L~~wL~e--------~~~TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~l 66 (431)
T PF10443_consen 1 RKEAIEQLKSWLNE--------NPNTFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNL 66 (431)
T ss_pred CchHHHHHHHHHhc--------CCCeEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHH
Confidence 56778999999987 33479999999999999999 888775332 444444322 1222333333
Q ss_pred HHHhh-----------------------cCCCC-CCCh-HHHHHH-------HHH-------------------Hh---C
Q 046770 276 LRSVA-----------------------MGIVD-HNDL-NLLQWK-------LKK-------------------QL---F 301 (475)
Q Consensus 276 l~~l~-----------------------~~~~~-~~~~-~~l~~~-------l~~-------------------~l---~ 301 (475)
..+++ +...+ ..+. .++... |++ +| .
T Consensus 67 A~qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hP 146 (431)
T PF10443_consen 67 ASQVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHP 146 (431)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCC
Confidence 33322 11111 1121 122111 111 01 1
Q ss_pred CceEEEEEECCCCCC---------hhhHhHhhCcCCCCCCCcEEEEecCChHHHHhcC------CCceeeCCCCCHHHHH
Q 046770 302 GKRFLLVLDDVWNEN---------YNDWIDLSRPFQDGAPGSKIIITTRNADAALIMG------TVQAYPLKGLSNDDCM 366 (475)
Q Consensus 302 ~kr~LlVlDdv~~~~---------~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~------~~~~~~l~~L~~~~~~ 366 (475)
.++-+|||||..... ..+|...+. ..+-.+||++|-+......+. ..+.+.|.-.+.+.|.
T Consensus 147 e~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv----~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak 222 (431)
T PF10443_consen 147 ERRPVVVIDNFLHKAEENDFIYDKLAEWAASLV----QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAK 222 (431)
T ss_pred ccCCEEEEcchhccCcccchHHHHHHHHHHHHH----hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHH
Confidence 236799999985322 123443322 224457888887754443322 4567889999999999
Q ss_pred HHHhhcccCCCCC------------CCC----chHHHHHHHHHHhcCCchHHHHHHHHHhcCCCChhH-HHHHHh
Q 046770 367 CLFTQHSLETRDF------------SMH----QPLKEIGAKIVIKCNGLPLAAKALGCLLHGKYDPSD-WESVLN 424 (475)
Q Consensus 367 ~lf~~~~~~~~~~------------~~~----~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~~~~~~-w~~~l~ 424 (475)
.+...+....... ... .....-....++..||--.-+..+++.++...++.+ ...+.+
T Consensus 223 ~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~ 297 (431)
T PF10443_consen 223 QYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIIS 297 (431)
T ss_pred HHHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999887543110 000 123444566888999999999999999998866543 444443
No 121
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.79 E-value=0.00022 Score=74.96 Aligned_cols=210 Identities=13% Similarity=0.121 Sum_probs=105.7
Q ss_pred cccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEec---CCCCHHH
Q 046770 194 EAKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVS---QDFDIIR 270 (475)
Q Consensus 194 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~---~~~~~~~ 270 (475)
-.+++|-++.++++..|+...... . ....++.|+|++|+||||+++.++.... ++..-|++-. ...+...
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~-~--~~~~illL~GP~GsGKTTl~~~la~~l~----~~~~Ew~npv~~~~~~~~~~ 155 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLE-N--APKRILLITGPSGCGKSTTIKILSKELG----IQVQEWSNPTLPDFQKNDHK 155 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhcccc-c--CCCcEEEEECCCCCCHHHHHHHHHHHhh----hHHHHHhhhhhhcccccccc
Confidence 346899999999999998762211 1 2235799999999999999999987421 2223332100 0000011
Q ss_pred HHHHHHHHhhcCCCCCCChHHHHHHHHH---H----hCCceEEEEEECCCCC---ChhhHhHhhC-cCCCCCCCcEEEEe
Q 046770 271 VTKSILRSVAMGIVDHNDLNLLQWKLKK---Q----LFGKRFLLVLDDVWNE---NYNDWIDLSR-PFQDGAPGSKIIIT 339 (475)
Q Consensus 271 ~l~~il~~l~~~~~~~~~~~~l~~~l~~---~----l~~kr~LlVlDdv~~~---~~~~~~~l~~-~l~~~~~gs~ilvT 339 (475)
+...+..++..-................ . ..+++.+|+||++.+. ....+..++. .+...+.-.-|++|
T Consensus 156 ~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pLI~I~ 235 (637)
T TIGR00602 156 VTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPLVFII 235 (637)
T ss_pred cchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCCceEEEEe
Confidence 1111111111110011111111111111 1 1356779999999332 1123444444 33222223345555
Q ss_pred cCChH---------HH-------HhcC--CCceeeCCCCCHHHHHHHHhhcccCCCCCCCCc---hHHHHHHHHHHhcCC
Q 046770 340 TRNAD---------AA-------LIMG--TVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQ---PLKEIGAKIVIKCNG 398 (475)
Q Consensus 340 tR~~~---------v~-------~~~~--~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~---~~~~~~~~I~~~c~G 398 (475)
|-... .. .... ....+.+.|++..+....+...+-......... ...+....|+..++|
T Consensus 236 TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~G 315 (637)
T TIGR00602 236 TESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSG 315 (637)
T ss_pred cCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCC
Confidence 53211 00 1111 234588999999997777766553221110010 113556678888888
Q ss_pred chHHHHHHHHHh
Q 046770 399 LPLAAKALGCLL 410 (475)
Q Consensus 399 ~PLai~~~~~~L 410 (475)
---.+......+
T Consensus 316 DiRsAIn~LQf~ 327 (637)
T TIGR00602 316 DIRSAINSLQFS 327 (637)
T ss_pred hHHHHHHHHHHH
Confidence 876666555554
No 122
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.76 E-value=0.00044 Score=68.37 Aligned_cols=135 Identities=16% Similarity=0.203 Sum_probs=82.1
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFG 302 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 302 (475)
....+.|+|..|.|||.|++.+.+. ...+......+.++ .......++..+..+ -...+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~~----se~f~~~~v~a~~~~---------~~~~Fk~~y-- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYLT----SEDFTNDFVKALRDN---------EMEKFKEKY-- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEecc----HHHHHHHHHHHHHhh---------hHHHHHHhh--
Confidence 4578999999999999999999984 33334322223332 233444444443321 123444444
Q ss_pred ceEEEEEECCCCCC-----hhhHhHhhCcCCCCCCCcEEEEecCCh---------HHHHhcCCCceeeCCCCCHHHHHHH
Q 046770 303 KRFLLVLDDVWNEN-----YNDWIDLSRPFQDGAPGSKIIITTRNA---------DAALIMGTVQAYPLKGLSNDDCMCL 368 (475)
Q Consensus 303 kr~LlVlDdv~~~~-----~~~~~~l~~~l~~~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~l 368 (475)
.-=++++||++-.. .+..-.+...+.. .|-.||+|++.. .....+...-++.+.+.+.+....+
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~--~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ai 252 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLE--NGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAI 252 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHh--cCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHH
Confidence 23388999996421 1222223333333 344899999652 3344445667899999999999999
Q ss_pred HhhcccCC
Q 046770 369 FTQHSLET 376 (475)
Q Consensus 369 f~~~~~~~ 376 (475)
+.+.+...
T Consensus 253 L~kka~~~ 260 (408)
T COG0593 253 LRKKAEDR 260 (408)
T ss_pred HHHHHHhc
Confidence 99866443
No 123
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.74 E-value=0.0037 Score=60.48 Aligned_cols=94 Identities=18% Similarity=0.198 Sum_probs=67.6
Q ss_pred CceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCChH-H-HHhcCCCceeeCCCCCHHHHHHHHhhcccCCCCC
Q 046770 302 GKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNAD-A-ALIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDF 379 (475)
Q Consensus 302 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v-~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 379 (475)
++.=++|||++...+......++..+..-..++.+|++|.+.+ + ....+....+.+.+++.+++.+.+.....
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~~----- 181 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQGI----- 181 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcCC-----
Confidence 4455889999988887788888888876566777777666543 2 33444557899999999999998875421
Q ss_pred CCCchHHHHHHHHHHhcCCchHHHHHHH
Q 046770 380 SMHQPLKEIGAKIVIKCNGLPLAAKALG 407 (475)
Q Consensus 380 ~~~~~~~~~~~~I~~~c~G~PLai~~~~ 407 (475)
. ....++..++|.|+.+..+.
T Consensus 182 --~-----~~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 182 --T-----VPAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred --c-----hHHHHHHHcCCCHHHHHHHh
Confidence 1 12457889999999776553
No 124
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.74 E-value=0.00048 Score=66.60 Aligned_cols=96 Identities=13% Similarity=0.145 Sum_probs=66.2
Q ss_pred CceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCCh-HHH-HhcCCCceeeCCCCCHHHHHHHHhhcccCCCCC
Q 046770 302 GKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNA-DAA-LIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDF 379 (475)
Q Consensus 302 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 379 (475)
+++=++|||++...+...-..++..+..-..++.+|++|... .+. .+.+....+.+.+++.+++...+.+..
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~------ 185 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG------ 185 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC------
Confidence 455699999998777666677777776555677777777653 222 333345778999999999998887541
Q ss_pred CCCchHHHHHHHHHHhcCCchHHHHHHH
Q 046770 380 SMHQPLKEIGAKIVIKCNGLPLAAKALG 407 (475)
Q Consensus 380 ~~~~~~~~~~~~I~~~c~G~PLai~~~~ 407 (475)
. . ...+..++..++|.|+.+..+.
T Consensus 186 ~-~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 186 V-S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred C-C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 1 1 1225567899999999765443
No 125
>CHL00176 ftsH cell division protein; Validated
Probab=97.73 E-value=0.00068 Score=71.79 Aligned_cols=179 Identities=15% Similarity=0.165 Sum_probs=95.5
Q ss_pred ccccccchhHHHH---HHHHhcCCCC-CCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHH
Q 046770 195 AKVYGRSKEREEI---VELLLKEDGT-SHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIR 270 (475)
Q Consensus 195 ~~~vGR~~e~~~l---~~~L~~~~~~-~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 270 (475)
.++.|.++.++++ ++.+.....- .-.....+-+.++|++|+|||+||+.+++.. .. .|+.++.. +
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~~-----p~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--EV-----PFFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CC-----CeeeccHH----H
Confidence 3577876655554 4444331110 0000224568999999999999999998843 21 12322211 1
Q ss_pred HHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCC----------hhh----HhHhhCcCC--CCCCCc
Q 046770 271 VTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNEN----------YND----WIDLSRPFQ--DGAPGS 334 (475)
Q Consensus 271 ~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~----------~~~----~~~l~~~l~--~~~~gs 334 (475)
+ ...... .....+...+.......+++|+|||++... ... +..++..+. ....+.
T Consensus 252 f----~~~~~g-----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 252 F----VEMFVG-----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred H----HHHhhh-----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 1 111100 111233334455556778999999995321 112 223333332 123456
Q ss_pred EEEEecCChHHHH--hcC---CCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCC
Q 046770 335 KIIITTRNADAAL--IMG---TVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNG 398 (475)
Q Consensus 335 ~ilvTtR~~~v~~--~~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G 398 (475)
.||.||...+... ... -...+.+...+.++-.++++.++..... ........|++.+.|
T Consensus 323 iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-----~~d~~l~~lA~~t~G 386 (638)
T CHL00176 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-----SPDVSLELIARRTPG 386 (638)
T ss_pred eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-----chhHHHHHHHhcCCC
Confidence 6777777644322 111 2356788888999999999877643211 112234568888888
No 126
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.73 E-value=6e-05 Score=76.63 Aligned_cols=187 Identities=13% Similarity=0.143 Sum_probs=111.1
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHH
Q 046770 196 KVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSI 275 (475)
Q Consensus 196 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~i 275 (475)
+++|-+.-...|...+.. . .-..--...|+.|+||||+|+.++.-.--. -+ ....+++.-...+.|
T Consensus 17 evvGQe~v~~~L~nal~~-~------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~------~~-~~~ePC~~C~~Ck~I 82 (515)
T COG2812 17 DVVGQEHVVKTLSNALEN-G------RIAHAYLFSGPRGVGKTTIARILAKALNCE------NG-PTAEPCGKCISCKEI 82 (515)
T ss_pred HhcccHHHHHHHHHHHHh-C------cchhhhhhcCCCCcCchhHHHHHHHHhcCC------CC-CCCCcchhhhhhHhh
Confidence 579999888999998876 2 222345688999999999999887521101 00 112222222222222
Q ss_pred HHHhhc-----CCCCCCChHHHHHHHHHHh-----CCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCCh-H
Q 046770 276 LRSVAM-----GIVDHNDLNLLQWKLKKQL-----FGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNA-D 344 (475)
Q Consensus 276 l~~l~~-----~~~~~~~~~~l~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~ 344 (475)
-..-.. ..-.....++.. .|.+.. ++|-=++|||+|+-.+...|..++..+..-.....+|+.|.+. .
T Consensus 83 ~~g~~~DviEiDaASn~gVddiR-~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~K 161 (515)
T COG2812 83 NEGSLIDVIEIDAASNTGVDDIR-EIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQK 161 (515)
T ss_pred hcCCcccchhhhhhhccChHHHH-HHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCc
Confidence 211000 000111222222 222222 3455589999998888889999999887655666666666653 2
Q ss_pred H-HHhcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchH
Q 046770 345 A-ALIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPL 401 (475)
Q Consensus 345 v-~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL 401 (475)
+ ....+..+.|.++.++.++....+...+...... ...+....|++..+|..-
T Consensus 162 ip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~----~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 162 IPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGIN----IEEDALSLIARAAEGSLR 215 (515)
T ss_pred CchhhhhccccccccCCCHHHHHHHHHHHHHhcCCc----cCHHHHHHHHHHcCCChh
Confidence 2 2334455789999999999988888776543321 223455567777777544
No 127
>PRK10536 hypothetical protein; Provisional
Probab=97.72 E-value=0.0004 Score=64.28 Aligned_cols=132 Identities=14% Similarity=0.195 Sum_probs=74.9
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEE----ecC-----C
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTY----VSQ-----D 265 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~----v~~-----~ 265 (475)
..+.+|......+..+|.+ . .++.++|+.|+|||+||..+..+.-....|+..+-.. ..+ +
T Consensus 55 ~~i~p~n~~Q~~~l~al~~--------~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLP 124 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES--------K--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLP 124 (262)
T ss_pred ccccCCCHHHHHHHHHHhc--------C--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCC
Confidence 3467888888889998855 2 3899999999999999998876422223344332221 111 1
Q ss_pred CCHHHHH----HHHHHHhhcCCCCCCChHHHHHHH-----------HHHhCCceE---EEEEECCCCCChhhHhHhhCcC
Q 046770 266 FDIIRVT----KSILRSVAMGIVDHNDLNLLQWKL-----------KKQLFGKRF---LLVLDDVWNENYNDWIDLSRPF 327 (475)
Q Consensus 266 ~~~~~~l----~~il~~l~~~~~~~~~~~~l~~~l-----------~~~l~~kr~---LlVlDdv~~~~~~~~~~l~~~l 327 (475)
-+..+-+ .-+...+..-. +. +.+...+ -.++.|+.+ +||+|++.+.+......++..
T Consensus 125 G~~~eK~~p~~~pi~D~L~~~~-~~---~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR- 199 (262)
T PRK10536 125 GDIAEKFAPYFRPVYDVLVRRL-GA---SFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTR- 199 (262)
T ss_pred CCHHHHHHHHHHHHHHHHHHHh-Ch---HHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhh-
Confidence 1222211 12222221100 00 1111111 124567655 999999988776555555443
Q ss_pred CCCCCCcEEEEecCCh
Q 046770 328 QDGAPGSKIIITTRNA 343 (475)
Q Consensus 328 ~~~~~gs~ilvTtR~~ 343 (475)
.+.+|++|+|--..
T Consensus 200 --~g~~sk~v~~GD~~ 213 (262)
T PRK10536 200 --LGENVTVIVNGDIT 213 (262)
T ss_pred --cCCCCEEEEeCChh
Confidence 35789999988654
No 128
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.69 E-value=0.00096 Score=69.28 Aligned_cols=206 Identities=13% Similarity=0.110 Sum_probs=104.3
Q ss_pred ccccccchhHHHHHHHH---hcCCC---CCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCH
Q 046770 195 AKVYGRSKEREEIVELL---LKEDG---TSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDI 268 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L---~~~~~---~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~ 268 (475)
.+++|-+..++++.+++ ..... .+. ...+-+.++|++|+|||+||+.+++.. ... ++.++.
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~--~~~~giLL~GppGtGKT~la~alA~~~--~~~-----~~~i~~---- 121 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGA--KIPKGVLLVGPPGTGKTLLAKAVAGEA--GVP-----FFSISG---- 121 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCC--CCCCcEEEECCCCCCHHHHHHHHHHHc--CCC-----eeeccH----
Confidence 45778776665554433 22000 001 233458899999999999999999843 222 222221
Q ss_pred HHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCC----------hhhHhH----hhCcCC--CCCC
Q 046770 269 IRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNEN----------YNDWID----LSRPFQ--DGAP 332 (475)
Q Consensus 269 ~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~~~----l~~~l~--~~~~ 332 (475)
.++ ...... .....+...+.......+.+|+|||++... ...+.. ++..+. ....
T Consensus 122 ~~~----~~~~~g-----~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~ 192 (495)
T TIGR01241 122 SDF----VEMFVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT 192 (495)
T ss_pred HHH----HHHHhc-----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC
Confidence 111 111110 111233333444445567899999994311 111222 222221 1223
Q ss_pred CcEEEEecCChHHH-H-hc---CCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCch-HHHHHH
Q 046770 333 GSKIIITTRNADAA-L-IM---GTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLP-LAAKAL 406 (475)
Q Consensus 333 gs~ilvTtR~~~v~-~-~~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P-Lai~~~ 406 (475)
+..||.||...+.. . .. .-...+.+...+.++-.++|..+...... ..... ...|++.+.|.. --|..+
T Consensus 193 ~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~~~~----l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 193 GVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-APDVD----LKAVARRTPGFSGADLANL 267 (495)
T ss_pred CeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-Ccchh----HHHHHHhCCCCCHHHHHHH
Confidence 45667777664321 1 11 12356888888888888888876533211 11112 346888888743 333333
Q ss_pred HHH-----hcCC---CChhHHHHHHhccc
Q 046770 407 GCL-----LHGK---YDPSDWESVLNSRI 427 (475)
Q Consensus 407 ~~~-----L~~~---~~~~~w~~~l~~~~ 427 (475)
... .+.+ -+.+.+..+++...
T Consensus 268 ~~eA~~~a~~~~~~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 268 LNEAALLAARKNKTEITMNDIEEAIDRVI 296 (495)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 221 1112 35566777666543
No 129
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.69 E-value=0.00038 Score=71.28 Aligned_cols=170 Identities=14% Similarity=0.092 Sum_probs=89.4
Q ss_pred ccccccchhHHHHHHHHhcCCCC-----CCCCCccEEEEEEccCCCcHHHHHHHHHcCccccc---CcCeEEEEEecCCC
Q 046770 195 AKVYGRSKEREEIVELLLKEDGT-----SHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQC---HFDLKAWTYVSQDF 266 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~-----~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~---~F~~~~wv~v~~~~ 266 (475)
.++.|.+..+++|.+.+.-.-.. ...-...+-+.++|++|+|||++|+.+++...... ......|+++....
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~e 261 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPE 261 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchh
Confidence 35778999988888876320000 00002345688999999999999999998532211 11233444443311
Q ss_pred CHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHH-hCCceEEEEEECCCCCC-------hhh-----HhHhhCcCCC--CC
Q 046770 267 DIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQ-LFGKRFLLVLDDVWNEN-------YND-----WIDLSRPFQD--GA 331 (475)
Q Consensus 267 ~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~-l~~kr~LlVlDdv~~~~-------~~~-----~~~l~~~l~~--~~ 331 (475)
+ +...... .......+....+.. ..+++++|+||+++... ... ...++..+.. ..
T Consensus 262 ----L----l~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 262 ----L----LNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred ----h----cccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC
Confidence 1 1110000 000111122222222 23578999999995321 001 1233333321 12
Q ss_pred CCcEEEEecCChHHHH--hcC---CCceeeCCCCCHHHHHHHHhhccc
Q 046770 332 PGSKIIITTRNADAAL--IMG---TVQAYPLKGLSNDDCMCLFTQHSL 374 (475)
Q Consensus 332 ~gs~ilvTtR~~~v~~--~~~---~~~~~~l~~L~~~~~~~lf~~~~~ 374 (475)
.+..||.||...+... ... -...+.+...+.++..++|..+..
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 3455666776543321 111 134589999999999999998763
No 130
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.67 E-value=0.0015 Score=61.80 Aligned_cols=111 Identities=22% Similarity=0.191 Sum_probs=57.9
Q ss_pred EEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHH--------HHHh----hcCCCCCCChHHHH
Q 046770 226 VVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSI--------LRSV----AMGIVDHNDLNLLQ 293 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~i--------l~~l----~~~~~~~~~~~~l~ 293 (475)
-|.|.|++|+|||+||+.+.+ .... ....++++...+..+++... ..++ .... ...+.....
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 96 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLE-DIVRQNWVD 96 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhh-cccceeecC
Confidence 466899999999999999986 2221 23455566555554443221 1110 0000 000000000
Q ss_pred HHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCC----------------CCCcEEEEecCCh
Q 046770 294 WKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDG----------------APGSKIIITTRNA 343 (475)
Q Consensus 294 ~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~----------------~~gs~ilvTtR~~ 343 (475)
..+.... .+...++||++...+.+.+..+...+..+ .++.+||+|+...
T Consensus 97 g~l~~A~-~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~ 161 (262)
T TIGR02640 97 NRLTLAV-REGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPV 161 (262)
T ss_pred chHHHHH-HcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCc
Confidence 0111111 13468999999876665555555544321 1356888888854
No 131
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.67 E-value=0.0015 Score=64.07 Aligned_cols=162 Identities=11% Similarity=0.086 Sum_probs=88.8
Q ss_pred cccc-cchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHH
Q 046770 196 KVYG-RSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKS 274 (475)
Q Consensus 196 ~~vG-R~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~ 274 (475)
.++| -+.-++.|...+.. . .-.....++|+.|+||||+|..+.+..--........ +... ...+.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~-~------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~---cg~C----~~c~~ 71 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAK-N------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEP---CGTC----TNCKR 71 (329)
T ss_pred HHHhhHHHHHHHHHHHHHc-C------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCC---CCcC----HHHHH
Confidence 3566 55566677777655 2 2235668999999999999988865311000000000 0000 00000
Q ss_pred HHHH-------hhcCCCCCCChHHHHHHHHHH----hCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCCh
Q 046770 275 ILRS-------VAMGIVDHNDLNLLQWKLKKQ----LFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNA 343 (475)
Q Consensus 275 il~~-------l~~~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 343 (475)
+... +... ......+++.+.+... ..+.+=++|+|++...+......++..+..-..++.+|++|.+.
T Consensus 72 ~~~~~hpD~~~i~~~-~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~ 150 (329)
T PRK08058 72 IDSGNHPDVHLVAPD-GQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENK 150 (329)
T ss_pred HhcCCCCCEEEeccc-cccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCCh
Confidence 0000 0000 0011122222222111 23455589999998777667777888887655677777777653
Q ss_pred H-HH-HhcCCCceeeCCCCCHHHHHHHHhhc
Q 046770 344 D-AA-LIMGTVQAYPLKGLSNDDCMCLFTQH 372 (475)
Q Consensus 344 ~-v~-~~~~~~~~~~l~~L~~~~~~~lf~~~ 372 (475)
. +. ...+....+++.+++.++..+.+.+.
T Consensus 151 ~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 151 HQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred HhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 2 22 23334578999999999998888754
No 132
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.63 E-value=0.0034 Score=60.86 Aligned_cols=94 Identities=11% Similarity=0.082 Sum_probs=66.5
Q ss_pred CceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCCh-HHH-HhcCCCceeeCCCCCHHHHHHHHhhcccCCCCC
Q 046770 302 GKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNA-DAA-LIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDF 379 (475)
Q Consensus 302 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 379 (475)
+++=++|+|+++..+......++..+..-..++.+|++|.+. .+. ...+....+.+.+++.++..+.+......
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~~---- 181 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSSA---- 181 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhcc----
Confidence 556688899998888778888888887666677777777653 332 33334578999999999999988865311
Q ss_pred CCCchHHHHHHHHHHhcCCchHHHH
Q 046770 380 SMHQPLKEIGAKIVIKCNGLPLAAK 404 (475)
Q Consensus 380 ~~~~~~~~~~~~I~~~c~G~PLai~ 404 (475)
. ...+...+..++|.|+.+.
T Consensus 182 --~---~~~~~~~~~l~~g~p~~A~ 201 (325)
T PRK06871 182 --E---ISEILTALRINYGRPLLAL 201 (325)
T ss_pred --C---hHHHHHHHHHcCCCHHHHH
Confidence 1 1124456788999997443
No 133
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.62 E-value=0.00035 Score=69.86 Aligned_cols=182 Identities=15% Similarity=0.145 Sum_probs=94.8
Q ss_pred ccccccchhHHHHHHHHhcC---CC--CCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHH
Q 046770 195 AKVYGRSKEREEIVELLLKE---DG--TSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDII 269 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~---~~--~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 269 (475)
.++.|-+..+++|.+.+.-. .+ ..-+-...+-+.++|++|+|||+||+.+++.. ...| +.+.. .
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l--~~~f-----i~i~~----s 213 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT--TATF-----IRVVG----S 213 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc--CCCE-----EEEeh----H
Confidence 46888888888877765310 00 00000234678899999999999999999842 2222 11211 1
Q ss_pred HHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCC-----------Chh---hHhHhhCcCC--CCCCC
Q 046770 270 RVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNE-----------NYN---DWIDLSRPFQ--DGAPG 333 (475)
Q Consensus 270 ~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~-----------~~~---~~~~l~~~l~--~~~~g 333 (475)
.+ .....+ .....+...+.......+.+|+||++... +.. .+..++..+. ....+
T Consensus 214 ~l----~~k~~g-----e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~ 284 (398)
T PTZ00454 214 EF----VQKYLG-----EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTN 284 (398)
T ss_pred HH----HHHhcc-----hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCC
Confidence 11 111111 11122222333333567899999997421 000 1222332222 12245
Q ss_pred cEEEEecCChHHHH--hcC---CCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchH
Q 046770 334 SKIIITTRNADAAL--IMG---TVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPL 401 (475)
Q Consensus 334 s~ilvTtR~~~v~~--~~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL 401 (475)
..||.||...+... ... -...+.+...+.++...+|..+..... ....-++ ..+++.+.|..-
T Consensus 285 v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~-l~~dvd~----~~la~~t~g~sg 352 (398)
T PTZ00454 285 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMN-LSEEVDL----EDFVSRPEKISA 352 (398)
T ss_pred EEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCC-CCcccCH----HHHHHHcCCCCH
Confidence 67888887643321 122 234588888888888888876543221 1122233 346667776643
No 134
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.61 E-value=0.00092 Score=72.68 Aligned_cols=136 Identities=14% Similarity=0.125 Sum_probs=74.5
Q ss_pred cccccchhHHHHHHHHhcCCCCC-CCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHH
Q 046770 196 KVYGRSKEREEIVELLLKEDGTS-HNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKS 274 (475)
Q Consensus 196 ~~vGR~~e~~~l~~~L~~~~~~~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~ 274 (475)
.++|-+..++.|...+.....+- ..+....++.++|+.|+|||+||+.++... +...+.++.++......
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l-----~~~~~~~d~se~~~~~~---- 525 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL-----GVHLERFDMSEYMEKHT---- 525 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh-----cCCeEEEeCchhhhccc----
Confidence 47788888888877776411100 001234568899999999999999998732 22234444443222111
Q ss_pred HHHHhhcCCCCCCChHHHHHHHHHHhCCc-eEEEEEECCCCCChhhHhHhhCcCCCC-----------CCCcEEEEecCC
Q 046770 275 ILRSVAMGIVDHNDLNLLQWKLKKQLFGK-RFLLVLDDVWNENYNDWIDLSRPFQDG-----------APGSKIIITTRN 342 (475)
Q Consensus 275 il~~l~~~~~~~~~~~~l~~~l~~~l~~k-r~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilvTtR~ 342 (475)
...+.+..++....+. ...+.+.+..+ .-+++||+++....+.+..++..+..+ -..+-||+||..
T Consensus 526 -~~~lig~~~gyvg~~~-~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~ 603 (731)
T TIGR02639 526 -VSRLIGAPPGYVGFEQ-GGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNA 603 (731)
T ss_pred -HHHHhcCCCCCcccch-hhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCc
Confidence 1112222111111111 11233333333 459999999887777777777766533 123457777754
No 135
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.60 E-value=0.00029 Score=71.00 Aligned_cols=182 Identities=16% Similarity=0.149 Sum_probs=94.9
Q ss_pred ccccccchhHHHHHHHHhcCCCC-----CCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGT-----SHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDII 269 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~-----~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 269 (475)
.++.|.+..+++|.+.+.-.-.. .-.-...+-+.|+|++|+|||+||+.+++. ....| +.+...
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f-----i~V~~s---- 251 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF-----LRVVGS---- 251 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE-----EEEecc----
Confidence 35788998888888776320000 000023456789999999999999999984 33333 222110
Q ss_pred HHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCC--------C---h---hhHhHhhCcCC--CCCCC
Q 046770 270 RVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNE--------N---Y---NDWIDLSRPFQ--DGAPG 333 (475)
Q Consensus 270 ~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~--------~---~---~~~~~l~~~l~--~~~~g 333 (475)
++ .....+ .....+...+.....+.+.+|+||++... + . .....++..+. ....+
T Consensus 252 eL----~~k~~G-----e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 252 EL----IQKYLG-----DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred hh----hhhhcc-----hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 11 111100 11111222223333456789999997321 0 0 01112222221 11235
Q ss_pred cEEEEecCChHHHHh--cC---CCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchH
Q 046770 334 SKIIITTRNADAALI--MG---TVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPL 401 (475)
Q Consensus 334 s~ilvTtR~~~v~~~--~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL 401 (475)
..||.||...+.... .. -...+.+...+.++..++|..+.....- ...-.+.. ++..+.|+--
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l-~~dvdl~~----la~~t~g~sg 390 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTL-AEDVDLEE----FIMAKDELSG 390 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCC-CcCcCHHH----HHHhcCCCCH
Confidence 678888876443322 11 2356889999999999999876533211 11223333 5666666543
No 136
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.00071 Score=70.12 Aligned_cols=163 Identities=18% Similarity=0.211 Sum_probs=91.8
Q ss_pred cccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHH
Q 046770 194 EAKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTK 273 (475)
Q Consensus 194 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~ 273 (475)
+.+.+|-++-+++|++.|.-...... -+-++++++||+|+|||+|++.+++ .....|- -++++.--|..++
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~--~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkfv---R~sLGGvrDEAEI-- 392 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKK--LKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFV---RISLGGVRDEAEI-- 392 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhcc--CCCcEEEEECCCCCCchhHHHHHHH--HhCCCEE---EEecCccccHHHh--
Confidence 45689999999999998853111111 3337999999999999999999998 3444442 2334443333222
Q ss_pred HHHHHhhcCC---CCCCChHHHHHHHHHHhCCceEEEEEECCCCCCh----hhHhHhhCcCCCCC---------------
Q 046770 274 SILRSVAMGI---VDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENY----NDWIDLSRPFQDGA--------------- 331 (475)
Q Consensus 274 ~il~~l~~~~---~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~----~~~~~l~~~l~~~~--------------- 331 (475)
.++. -+... ..+.+.+++. +.++-|++||.++.... +.-..++..|.+..
T Consensus 393 ------RGHRRTYIGamP-GrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDL 464 (782)
T COG0466 393 ------RGHRRTYIGAMP-GKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDL 464 (782)
T ss_pred ------ccccccccccCC-hHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccch
Confidence 1111 01111 2233333332 45678999999954221 11112222222111
Q ss_pred CCcEEEEecCChH--HHHhcCCCceeeCCCCCHHHHHHHHhhcc
Q 046770 332 PGSKIIITTRNAD--AALIMGTVQAYPLKGLSNDDCMCLFTQHS 373 (475)
Q Consensus 332 ~gs~ilvTtR~~~--v~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 373 (475)
....+|.|..+-+ -+..+....++++.+-+++|=.++-+++.
T Consensus 465 S~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 465 SKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred hheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 1123344444322 23344566889999999999888877765
No 137
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.0015 Score=62.39 Aligned_cols=188 Identities=15% Similarity=0.133 Sum_probs=102.8
Q ss_pred cccccchhHHHHHHHHhcCCC-------CCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCH
Q 046770 196 KVYGRSKEREEIVELLLKEDG-------TSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDI 268 (475)
Q Consensus 196 ~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~ 268 (475)
++=|-++.+++|.+.+.-+-. -+- ..++=|.++|++|.|||-||++|++. ....| +.+..
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI--~PPKGVLLYGPPGTGKTLLAkAVA~~--T~AtF-----Irvvg---- 218 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGI--DPPKGVLLYGPPGTGKTLLAKAVANQ--TDATF-----IRVVG---- 218 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCC--CCCCceEeeCCCCCcHHHHHHHHHhc--cCceE-----EEecc----
Confidence 455778888888776532100 011 34567889999999999999999994 44334 33333
Q ss_pred HHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCC-ceEEEEEECCCCC-----------Ch---hhHhHhhCcCC--CCC
Q 046770 269 IRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFG-KRFLLVLDDVWNE-----------NY---NDWIDLSRPFQ--DGA 331 (475)
Q Consensus 269 ~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~-kr~LlVlDdv~~~-----------~~---~~~~~l~~~l~--~~~ 331 (475)
.++++..-+.. ..+++.+.+..+. .+.+|++|.+..- +. -..-+++..+. +..
T Consensus 219 ----SElVqKYiGEG------aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~ 288 (406)
T COG1222 219 ----SELVQKYIGEG------ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR 288 (406)
T ss_pred ----HHHHHHHhccc------hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC
Confidence 23333332221 3455555555544 4889999998320 11 11233444443 123
Q ss_pred CCcEEEEecCChHHHH--hcCC---CceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchH----H
Q 046770 332 PGSKIIITTRNADAAL--IMGT---VQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPL----A 402 (475)
Q Consensus 332 ~gs~ilvTtR~~~v~~--~~~~---~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL----a 402 (475)
...|||..|...++.. .+.+ .+.+++..-+.+.-.++|+-|+-.- +....-+++. |++.|.|.-- |
T Consensus 289 ~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM-~l~~dvd~e~----la~~~~g~sGAdlka 363 (406)
T COG1222 289 GNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKM-NLADDVDLEL----LARLTEGFSGADLKA 363 (406)
T ss_pred CCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhc-cCccCcCHHH----HHHhcCCCchHHHHH
Confidence 4568999888765532 1222 2456666444555556666554322 2122233444 6677777643 4
Q ss_pred HHHHHHHhc
Q 046770 403 AKALGCLLH 411 (475)
Q Consensus 403 i~~~~~~L~ 411 (475)
+.+=|++++
T Consensus 364 ictEAGm~A 372 (406)
T COG1222 364 ICTEAGMFA 372 (406)
T ss_pred HHHHHhHHH
Confidence 445555544
No 138
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.53 E-value=0.00086 Score=58.45 Aligned_cols=139 Identities=17% Similarity=0.156 Sum_probs=75.5
Q ss_pred ccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccc------------------cCcCeEEEE
Q 046770 199 GRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQ------------------CHFDLKAWT 260 (475)
Q Consensus 199 GR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------------------~~F~~~~wv 260 (475)
|-++..+.|.+.+.. + .-...+.++|+.|+||+++|..+++..--. .......|+
T Consensus 1 gq~~~~~~L~~~~~~-~------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~ 73 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-G------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIII 73 (162)
T ss_dssp S-HHHHHHHHHHHHC-T------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEE
T ss_pred CcHHHHHHHHHHHHc-C------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEE
Confidence 345556667777765 2 223457899999999999998876531111 111122233
Q ss_pred EecCC---CCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEE
Q 046770 261 YVSQD---FDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKII 337 (475)
Q Consensus 261 ~v~~~---~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il 337 (475)
.-... ..+.++ +.+...+.... ..++.=++||||++..+.+.+..++..+..-..++.+|
T Consensus 74 ~~~~~~~~i~i~~i-r~i~~~~~~~~----------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fi 136 (162)
T PF13177_consen 74 KPDKKKKSIKIDQI-REIIEFLSLSP----------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFI 136 (162)
T ss_dssp ETTTSSSSBSHHHH-HHHHHHCTSS-----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEE
T ss_pred ecccccchhhHHHH-HHHHHHHHHHH----------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEE
Confidence 22221 122111 12322222111 12345589999998888888888888887666788998
Q ss_pred EecCChH--HHHhcCCCceeeCCCCC
Q 046770 338 ITTRNAD--AALIMGTVQAYPLKGLS 361 (475)
Q Consensus 338 vTtR~~~--v~~~~~~~~~~~l~~L~ 361 (475)
++|.+.. .....+....+.+.+++
T Consensus 137 L~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 137 LITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEES-GGGS-HHHHTTSEEEEE----
T ss_pred EEECChHHChHHHHhhceEEecCCCC
Confidence 8888753 23333444566666654
No 139
>PRK04132 replication factor C small subunit; Provisional
Probab=97.51 E-value=0.0022 Score=69.47 Aligned_cols=158 Identities=13% Similarity=-0.014 Sum_probs=99.3
Q ss_pred cCCCcHHHHHHHHHcCcccccCc-CeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEE
Q 046770 232 MGGLGKTTLAQLVYNDSRVQCHF-DLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLD 310 (475)
Q Consensus 232 ~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlD 310 (475)
|.++||||+|..++++.- ...+ ...+-++.++..... .+++++..+....+. -..+.-++|||
T Consensus 574 Ph~lGKTT~A~ala~~l~-g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~--------------~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALARELF-GENWRHNFLELNASDERGIN-VIREKVKEFARTKPI--------------GGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhhh-cccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc--------------CCCCCEEEEEE
Confidence 678999999999998531 1222 234556666544443 444554443321110 01245799999
Q ss_pred CCCCCChhhHhHhhCcCCCCCCCcEEEEecCCh-HHH-HhcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHH
Q 046770 311 DVWNENYNDWIDLSRPFQDGAPGSKIIITTRNA-DAA-LIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEI 388 (475)
Q Consensus 311 dv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~ 388 (475)
+++..+......++..+..-...+++|++|.+. .+. ...+....+++.+++.++....+...+-..+- .. ..+.
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi-~i---~~e~ 713 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL-EL---TEEG 713 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC-CC---CHHH
Confidence 999888777888888777544567777776653 222 22234578999999999998888765532211 11 1456
Q ss_pred HHHHHHhcCCchHHHHHHHHH
Q 046770 389 GAKIVIKCNGLPLAAKALGCL 409 (475)
Q Consensus 389 ~~~I~~~c~G~PLai~~~~~~ 409 (475)
...|++.|+|.+..+..+...
T Consensus 714 L~~Ia~~s~GDlR~AIn~Lq~ 734 (846)
T PRK04132 714 LQAILYIAEGDMRRAINILQA 734 (846)
T ss_pred HHHHHHHcCCCHHHHHHHHHH
Confidence 778999999988655544443
No 140
>PRK12377 putative replication protein; Provisional
Probab=97.49 E-value=0.00016 Score=67.28 Aligned_cols=101 Identities=21% Similarity=0.088 Sum_probs=55.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCce
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKR 304 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr 304 (475)
..+.|+|++|+|||+||..+++... .....+.++++. +++..+-..... ...... .+.. + .+.
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~--~~g~~v~~i~~~------~l~~~l~~~~~~----~~~~~~---~l~~-l-~~~ 164 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLL--AKGRSVIVVTVP------DVMSRLHESYDN----GQSGEK---FLQE-L-CKV 164 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH--HcCCCeEEEEHH------HHHHHHHHHHhc----cchHHH---HHHH-h-cCC
Confidence 4688999999999999999998542 222334555543 344444333221 111122 2222 2 345
Q ss_pred EEEEEECCCCCChhhHhH--hhCcCCCC-CCCcEEEEecCC
Q 046770 305 FLLVLDDVWNENYNDWID--LSRPFQDG-APGSKIIITTRN 342 (475)
Q Consensus 305 ~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~ilvTtR~ 342 (475)
-||||||+.......|.. +...+... .+.--+|+||..
T Consensus 165 dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 165 DLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 699999996544344543 32222211 223456777765
No 141
>PRK08118 topology modulation protein; Reviewed
Probab=97.49 E-value=5.5e-05 Score=66.33 Aligned_cols=34 Identities=35% Similarity=0.619 Sum_probs=27.1
Q ss_pred EEEEEccCCCcHHHHHHHHHcCcccc-cCcCeEEE
Q 046770 226 VVSIIGMGGLGKTTLAQLVYNDSRVQ-CHFDLKAW 259 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~w 259 (475)
-|.|+|++|+||||||+.+++..... .+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 57899999999999999999865443 45666665
No 142
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.48 E-value=0.0015 Score=72.03 Aligned_cols=140 Identities=16% Similarity=0.146 Sum_probs=75.2
Q ss_pred ccccccchhHHHHHHHHhcCCCC-CCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGT-SHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTK 273 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~-~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~ 273 (475)
..++|.+.-++.|...+.....+ ...+....++.++|+.|+|||+||+.+++..- ..-...+.++++.-.. .
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~--~~~~~~i~id~se~~~-~---- 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMF--DSDDAMVRIDMSEFME-K---- 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhh--cCCCcEEEEEhHHhhh-h----
Confidence 35889998888888887641110 00002235788999999999999999986321 1112233344433211 1
Q ss_pred HHHHHhhcCCCCCCChHHHHHHHHHHhCCc-eEEEEEECCCCCChhhHhHhhCcCCCC-----------CCCcEEEEecC
Q 046770 274 SILRSVAMGIVDHNDLNLLQWKLKKQLFGK-RFLLVLDDVWNENYNDWIDLSRPFQDG-----------APGSKIIITTR 341 (475)
Q Consensus 274 ~il~~l~~~~~~~~~~~~l~~~l~~~l~~k-r~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilvTtR 341 (475)
.....+.+..++....+. ...+.+.+..+ .-+|+|||+...+...+..++..+..+ ...+-||+||.
T Consensus 641 ~~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN 719 (857)
T PRK10865 641 HSVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSN 719 (857)
T ss_pred hhHHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCC
Confidence 112222222222111111 11233333223 359999999877777777776655432 12233788887
Q ss_pred C
Q 046770 342 N 342 (475)
Q Consensus 342 ~ 342 (475)
.
T Consensus 720 ~ 720 (857)
T PRK10865 720 L 720 (857)
T ss_pred c
Confidence 5
No 143
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.46 E-value=0.0064 Score=59.50 Aligned_cols=94 Identities=12% Similarity=0.059 Sum_probs=65.9
Q ss_pred CceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCCh-HHH-HhcCCCceeeCCCCCHHHHHHHHhhcccCCCCC
Q 046770 302 GKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNA-DAA-LIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDF 379 (475)
Q Consensus 302 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 379 (475)
+++=++|||+++..+...-..++..+..-..++.+|++|.+. .+. ...+....+.+.+++.+++.+.+.....
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~----- 181 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREVT----- 181 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHccC-----
Confidence 566699999998877777888888887655677777777653 333 3334456789999999999988865421
Q ss_pred CCCchHHHHHHHHHHhcCCchHHHH
Q 046770 380 SMHQPLKEIGAKIVIKCNGLPLAAK 404 (475)
Q Consensus 380 ~~~~~~~~~~~~I~~~c~G~PLai~ 404 (475)
.+ .+.+..++..++|.|..+.
T Consensus 182 -~~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 182 -MS---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred -CC---HHHHHHHHHHcCCCHHHHH
Confidence 11 2235568899999997443
No 144
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.46 E-value=0.0032 Score=61.64 Aligned_cols=74 Identities=15% Similarity=0.313 Sum_probs=44.0
Q ss_pred chhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccc--cCc---CeEEEEEecCCCCHHHHHHHH
Q 046770 201 SKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQ--CHF---DLKAWTYVSQDFDIIRVTKSI 275 (475)
Q Consensus 201 ~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--~~F---~~~~wv~v~~~~~~~~~l~~i 275 (475)
+.-.+.|.+.+.+.+. ....+|+|.|.=|+||||+.+.+.+..+.. ..+ ..-+|-......-...++..+
T Consensus 2 ~~~a~~la~~I~~~~~-----~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l 76 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDS-----DDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEEL 76 (325)
T ss_pred hHHHHHHHHHHhccCC-----CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHH
Confidence 3445667777765221 356899999999999999999987754332 111 233444444333334445555
Q ss_pred HHHh
Q 046770 276 LRSV 279 (475)
Q Consensus 276 l~~l 279 (475)
..++
T Consensus 77 ~~~l 80 (325)
T PF07693_consen 77 FDQL 80 (325)
T ss_pred HHHH
Confidence 4444
No 145
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.44 E-value=0.00062 Score=62.66 Aligned_cols=207 Identities=14% Similarity=0.130 Sum_probs=119.0
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCc----ccccCcCeEEEEEecCC-------
Q 046770 197 VYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDS----RVQCHFDLKAWTYVSQD------- 265 (475)
Q Consensus 197 ~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~----~~~~~F~~~~wv~v~~~------- 265 (475)
+.++++....+...... ++.+-+.++|+.|.||-|.+..+.++. -.+-.-+.+.|.+-+..
T Consensus 15 l~~~~e~~~~Lksl~~~--------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistv 86 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSST--------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTV 86 (351)
T ss_pred cccHHHHHHHHHHhccc--------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEe
Confidence 56667777777776543 456789999999999998876655431 11112234444433322
Q ss_pred ---C-----------CHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceE-EEEEECCCCCChhhHhHhhCcCCCC
Q 046770 266 ---F-----------DIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRF-LLVLDDVWNENYNDWIDLSRPFQDG 330 (475)
Q Consensus 266 ---~-----------~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~ 330 (475)
+ ...-+..+++.+......-. .-..+.| ++||-.+.+...+....++..+..-
T Consensus 87 sS~yHlEitPSDaG~~DRvViQellKevAQt~qie------------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkY 154 (351)
T KOG2035|consen 87 SSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIE------------TQGQRPFKVVVINEADELTRDAQHALRRTMEKY 154 (351)
T ss_pred cccceEEeChhhcCcccHHHHHHHHHHHHhhcchh------------hccccceEEEEEechHhhhHHHHHHHHHHHHHH
Confidence 1 12233444444433221100 0012344 6677777655555666666666544
Q ss_pred CCCcEEEEecCCh--HHHHhcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHH
Q 046770 331 APGSKIIITTRNA--DAALIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGC 408 (475)
Q Consensus 331 ~~gs~ilvTtR~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~ 408 (475)
...+|+|+...+. -+...-+..-.+++...+++|....+.+.+-..+- . .-.+++.+|+++++|+---...+..
T Consensus 155 s~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l-~---lp~~~l~rIa~kS~~nLRrAllmlE 230 (351)
T KOG2035|consen 155 SSNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGL-Q---LPKELLKRIAEKSNRNLRRALLMLE 230 (351)
T ss_pred hcCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcc-c---CcHHHHHHHHHHhcccHHHHHHHHH
Confidence 5678888765542 12222223345788999999999999877644321 1 1268899999999998665555554
Q ss_pred HhcCC---C-------ChhHHHHHHhccc
Q 046770 409 LLHGK---Y-------DPSDWESVLNSRI 427 (475)
Q Consensus 409 ~L~~~---~-------~~~~w~~~l~~~~ 427 (475)
.++-+ . ..-+|...+.+..
T Consensus 231 ~~~~~n~~~~a~~~~i~~~dWe~~i~e~a 259 (351)
T KOG2035|consen 231 AVRVNNEPFTANSQVIPKPDWEIYIQEIA 259 (351)
T ss_pred HHHhccccccccCCCCCCccHHHHHHHHH
Confidence 44432 1 1347887766533
No 146
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.43 E-value=0.00024 Score=65.39 Aligned_cols=35 Identities=31% Similarity=0.332 Sum_probs=28.1
Q ss_pred EEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEe
Q 046770 226 VVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYV 262 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 262 (475)
.++|+|..|+|||||+..+..+ ....|.++.+++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEec
Confidence 5779999999999999999874 5667877766644
No 147
>PRK08181 transposase; Validated
Probab=97.41 E-value=0.00029 Score=66.48 Aligned_cols=100 Identities=20% Similarity=0.070 Sum_probs=53.4
Q ss_pred EEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceE
Q 046770 226 VVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRF 305 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~ 305 (475)
-+.|+|++|+|||.||..+.+.. ......+.|++ ..+++..+.... ...........+ .+.=
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a--~~~g~~v~f~~------~~~L~~~l~~a~-----~~~~~~~~l~~l-----~~~d 169 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLAL--IENGWRVLFTR------TTDLVQKLQVAR-----RELQLESAIAKL-----DKFD 169 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHH--HHcCCceeeee------HHHHHHHHHHHH-----hCCcHHHHHHHH-----hcCC
Confidence 48999999999999999998742 22222344543 234444443221 111222222222 2334
Q ss_pred EEEEECCCCCChhhHh--HhhCcCCCCCCCcEEEEecCCh
Q 046770 306 LLVLDDVWNENYNDWI--DLSRPFQDGAPGSKIIITTRNA 343 (475)
Q Consensus 306 LlVlDdv~~~~~~~~~--~l~~~l~~~~~gs~ilvTtR~~ 343 (475)
||||||+.......|. .+...+.....+..+|+||..+
T Consensus 170 LLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 170 LLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 9999999654333332 2333332211224688888764
No 148
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0018 Score=60.90 Aligned_cols=80 Identities=11% Similarity=0.149 Sum_probs=49.2
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcCcccc--cCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYNDSRVQ--CHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLF 301 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~--~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 301 (475)
.++|.++||+|.|||+|.+.+++...++ +.|....-+.++. ..++.+-..+ ...-...+.+++++.++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsE------SgKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSE------SGKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhh------hhhHHHHHHHHHHHHHh
Confidence 3789999999999999999999875443 3333333333322 2233322222 23345566777888887
Q ss_pred CceE--EEEEECCC
Q 046770 302 GKRF--LLVLDDVW 313 (475)
Q Consensus 302 ~kr~--LlVlDdv~ 313 (475)
++.. ++.+|.|.
T Consensus 247 d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 247 DRGNLVFVLIDEVE 260 (423)
T ss_pred CCCcEEEEEeHHHH
Confidence 6643 44569883
No 149
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.40 E-value=0.00078 Score=68.01 Aligned_cols=152 Identities=16% Similarity=0.203 Sum_probs=82.6
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHH
Q 046770 196 KVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSI 275 (475)
Q Consensus 196 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~i 275 (475)
.++||++.++.+...+.. + .-|.|.|++|+|||+||+.+.........|.... +..+ .+.+++..+
T Consensus 21 ~i~gre~vI~lll~aala-g---------~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~-~~ft---tp~DLfG~l 86 (498)
T PRK13531 21 GLYERSHAIRLCLLAALS-G---------ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLM-TRFS---TPEEVFGPL 86 (498)
T ss_pred hccCcHHHHHHHHHHHcc-C---------CCEEEECCCChhHHHHHHHHHHHhcccCcceeee-eeec---CcHHhcCcH
Confidence 589999999999888766 2 2478999999999999999987432222343111 0001 122222211
Q ss_pred -HHHhhcCCCCCCChHHHHHHHHHHhCC---ceEEEEEECCCCCChhhHhHhhCcCCCC---------CCCcEEEEecCC
Q 046770 276 -LRSVAMGIVDHNDLNLLQWKLKKQLFG---KRFLLVLDDVWNENYNDWIDLSRPFQDG---------APGSKIIITTRN 342 (475)
Q Consensus 276 -l~~l~~~~~~~~~~~~l~~~l~~~l~~---kr~LlVlDdv~~~~~~~~~~l~~~l~~~---------~~gs~ilvTtR~ 342 (475)
+..... .. .+.....| ..-++++|+++..+......++..+... ....++++++.+
T Consensus 87 ~i~~~~~----~g-------~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN 155 (498)
T PRK13531 87 SIQALKD----EG-------RYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASN 155 (498)
T ss_pred HHhhhhh----cC-------chhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECC
Confidence 111100 00 01111122 1128999999988776666666655321 112356555555
Q ss_pred hHH-------HHhcCCCceeeCCCCCH-HHHHHHHhhc
Q 046770 343 ADA-------ALIMGTVQAYPLKGLSN-DDCMCLFTQH 372 (475)
Q Consensus 343 ~~v-------~~~~~~~~~~~l~~L~~-~~~~~lf~~~ 372 (475)
+-. +....-.-.+.+.+++. ++-.+++...
T Consensus 156 ~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 156 ELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 321 11111123578899975 4447777653
No 150
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.39 E-value=0.00052 Score=71.58 Aligned_cols=44 Identities=27% Similarity=0.377 Sum_probs=35.7
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 196 KVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 196 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
+++|.+..++.+...+.. ....-+.|+|++|+|||++|+.+++.
T Consensus 66 ~iiGqs~~i~~l~~al~~--------~~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCG--------PNPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HeeCcHHHHHHHHHHHhC--------CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 589999999999887655 22345689999999999999999763
No 151
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.39 E-value=0.0011 Score=73.32 Aligned_cols=140 Identities=16% Similarity=0.151 Sum_probs=77.2
Q ss_pred ccccccchhHHHHHHHHhcCCCCC-CCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTS-HNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTK 273 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~ 273 (475)
..++|.+..++.+...+.....+- ..+....++.++|+.|+|||++|+.+.... ...-...+.++.+.......
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l--~~~~~~~i~~d~s~~~~~~~--- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL--FDDEDAMVRIDMSEYMEKHS--- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh--cCCCCcEEEEechhhcccch---
Confidence 358999999999988886521110 001234578899999999999999998732 11112233344443222111
Q ss_pred HHHHHhhcCCCCCCChHHHHHHHHHHhCCc-eEEEEEECCCCCChhhHhHhhCcCCCCC-----------CCcEEEEecC
Q 046770 274 SILRSVAMGIVDHNDLNLLQWKLKKQLFGK-RFLLVLDDVWNENYNDWIDLSRPFQDGA-----------PGSKIIITTR 341 (475)
Q Consensus 274 ~il~~l~~~~~~~~~~~~l~~~l~~~l~~k-r~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR 341 (475)
...+.+..++.-..++ ...+.+.+..+ ..+|+||++...+...+..++..|..+. ..+-||+||.
T Consensus 640 --~~~l~g~~~g~~g~~~-~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn 716 (852)
T TIGR03346 640 --VARLIGAPPGYVGYEE-GGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSN 716 (852)
T ss_pred --HHHhcCCCCCccCccc-ccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCC
Confidence 1122222111111110 11233333223 3489999998888778887777664331 2344788887
Q ss_pred C
Q 046770 342 N 342 (475)
Q Consensus 342 ~ 342 (475)
.
T Consensus 717 ~ 717 (852)
T TIGR03346 717 L 717 (852)
T ss_pred c
Confidence 5
No 152
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.37 E-value=0.00065 Score=74.62 Aligned_cols=138 Identities=15% Similarity=0.141 Sum_probs=76.2
Q ss_pred ccccccchhHHHHHHHHhcCCCC-CCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGT-SHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTK 273 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~-~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~ 273 (475)
..++|-+..++.+.+.+.....+ ........++.++|+.|+|||.||+.+.... -......+-++++.....
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l--~~~~~~~~~~dmse~~~~----- 638 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL--YGGEQNLITINMSEFQEA----- 638 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH--hCCCcceEEEeHHHhhhh-----
Confidence 46899999999998888541111 0111345688999999999999998887632 111111222222221110
Q ss_pred HHHHHhhcCCCC---CCChHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCCC-----------CCcEEEEe
Q 046770 274 SILRSVAMGIVD---HNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDGA-----------PGSKIIIT 339 (475)
Q Consensus 274 ~il~~l~~~~~~---~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvT 339 (475)
.-...+.+..++ ......+...+++ ...-+|+||++...+...+..++..+..+. ..+-||+|
T Consensus 639 ~~~~~l~g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred hhhccccCCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 111122222211 1111223333332 345699999998777777777766655432 45677888
Q ss_pred cCC
Q 046770 340 TRN 342 (475)
Q Consensus 340 tR~ 342 (475)
|..
T Consensus 716 SNl 718 (852)
T TIGR03345 716 SNA 718 (852)
T ss_pred CCC
Confidence 775
No 153
>PRK06921 hypothetical protein; Provisional
Probab=97.36 E-value=0.00088 Score=63.38 Aligned_cols=99 Identities=18% Similarity=0.231 Sum_probs=52.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCce
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKR 304 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr 304 (475)
..+.++|..|+|||.||..+++... ..+-..+++++.. +++..+...+ ......+.. + .+-
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~-~~~g~~v~y~~~~------~l~~~l~~~~----------~~~~~~~~~-~-~~~ 178 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELM-RKKGVPVLYFPFV------EGFGDLKDDF----------DLLEAKLNR-M-KKV 178 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHh-hhcCceEEEEEHH------HHHHHHHHHH----------HHHHHHHHH-h-cCC
Confidence 5688999999999999999998532 2212345565532 2333332221 111122222 2 234
Q ss_pred EEEEEECCC-----CCChhhHhH--hhCcCCCC-CCCcEEEEecCC
Q 046770 305 FLLVLDDVW-----NENYNDWID--LSRPFQDG-APGSKIIITTRN 342 (475)
Q Consensus 305 ~LlVlDdv~-----~~~~~~~~~--l~~~l~~~-~~gs~ilvTtR~ 342 (475)
=||||||+. .+....|.. +...+... ..+..+|+||..
T Consensus 179 dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 179 EVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred CEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 599999993 222234442 33322211 134567888875
No 154
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.34 E-value=0.00093 Score=64.47 Aligned_cols=122 Identities=15% Similarity=0.183 Sum_probs=69.0
Q ss_pred ccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHH
Q 046770 199 GRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRS 278 (475)
Q Consensus 199 GR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~ 278 (475)
+|..-.....+++..-... ....-+.|+|..|+|||.||..+++... ...+. +.+++++ +++..+-..
T Consensus 135 ~~~~~~~~~~~fi~~~~~~----~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~~-v~~~~~~------~l~~~lk~~ 202 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPG----EKVKGLYLYGDFGVGKSYLLAAIANELA-KKGVS-STLLHFP------EFIRELKNS 202 (306)
T ss_pred HHHHHHHHHHHHHHHhhcc----CCCCeEEEECCCCCCHHHHHHHHHHHHH-HcCCC-EEEEEHH------HHHHHHHHH
Confidence 4444445555555431110 1335688999999999999999998542 22233 4455443 444554444
Q ss_pred hhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCChhhHhH--hhCcCC-CC-CCCcEEEEecCC
Q 046770 279 VAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWID--LSRPFQ-DG-APGSKIIITTRN 342 (475)
Q Consensus 279 l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~--l~~~l~-~~-~~gs~ilvTtR~ 342 (475)
+... +.. ..+.. + .+-=||||||+..+....|.. ++..+. .. ..+-.+|+||..
T Consensus 203 ~~~~-----~~~---~~l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 203 ISDG-----SVK---EKIDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred HhcC-----cHH---HHHHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 3211 122 22322 2 245599999998776667764 444432 11 245678888875
No 155
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.32 E-value=0.00022 Score=63.24 Aligned_cols=101 Identities=23% Similarity=0.280 Sum_probs=50.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCce
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKR 304 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr 304 (475)
.-+.|+|+.|+|||.||..+.+... ...+ .+.|++. .+ ++..+.... ........ +.... +-
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~-~~g~-~v~f~~~------~~----L~~~l~~~~-~~~~~~~~---~~~l~--~~ 109 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAI-RKGY-SVLFITA------SD----LLDELKQSR-SDGSYEEL---LKRLK--RV 109 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH-HTT---EEEEEH------HH----HHHHHHCCH-CCTTHCHH---HHHHH--TS
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhc-cCCc-ceeEeec------Cc----eeccccccc-cccchhhh---cCccc--cc
Confidence 4589999999999999999987432 2222 3455543 23 333333322 12222222 33332 23
Q ss_pred EEEEEECCCCCChhhHhH--hhCcCCCCCCCcEEEEecCCh
Q 046770 305 FLLVLDDVWNENYNDWID--LSRPFQDGAPGSKIIITTRNA 343 (475)
Q Consensus 305 ~LlVlDdv~~~~~~~~~~--l~~~l~~~~~gs~ilvTtR~~ 343 (475)
=||||||+.......|.. +...+........+|+||...
T Consensus 110 dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~~ 150 (178)
T PF01695_consen 110 DLLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNLS 150 (178)
T ss_dssp SCEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS-
T ss_pred cEecccccceeeecccccccchhhhhHhhcccCeEeeCCCc
Confidence 488899997665445442 111111111123578888753
No 156
>PRK06526 transposase; Provisional
Probab=97.32 E-value=0.0003 Score=65.98 Aligned_cols=100 Identities=20% Similarity=0.166 Sum_probs=51.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCce
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKR 304 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr 304 (475)
.-+.|+|++|+|||+||..+..... ...+. +.|+ +..+++..+..... . .. +...+... .+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~-~~g~~-v~f~------t~~~l~~~l~~~~~----~-~~---~~~~l~~l--~~~ 160 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRAC-QAGHR-VLFA------TAAQWVARLAAAHH----A-GR---LQAELVKL--GRY 160 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHH-HCCCc-hhhh------hHHHHHHHHHHHHh----c-Cc---HHHHHHHh--ccC
Confidence 4579999999999999999876432 12222 2232 23344444432211 1 11 22233332 234
Q ss_pred EEEEEECCCCCChhhHh--HhhCcCCC-CCCCcEEEEecCCh
Q 046770 305 FLLVLDDVWNENYNDWI--DLSRPFQD-GAPGSKIIITTRNA 343 (475)
Q Consensus 305 ~LlVlDdv~~~~~~~~~--~l~~~l~~-~~~gs~ilvTtR~~ 343 (475)
-||||||+.......+. .+...+.. ...+ .+|+||..+
T Consensus 161 dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~-s~IitSn~~ 201 (254)
T PRK06526 161 PLLIVDEVGYIPFEPEAANLFFQLVSSRYERA-SLIVTSNKP 201 (254)
T ss_pred CEEEEcccccCCCCHHHHHHHHHHHHHHHhcC-CEEEEcCCC
Confidence 58999999754322222 22222221 1123 488888764
No 157
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.30 E-value=0.0019 Score=63.05 Aligned_cols=93 Identities=17% Similarity=0.298 Sum_probs=64.8
Q ss_pred CceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCC-hHHH-HhcCCCceeeCCCCCHHHHHHHHhhcccCCCCC
Q 046770 302 GKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRN-ADAA-LIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDF 379 (475)
Q Consensus 302 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 379 (475)
++.=++|||+++..+......++..+..-..++.+|++|.+ ..+. ...+....+.+.+++.++..+.+.....
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~~----- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQGV----- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcCC-----
Confidence 44558899999988888889998888766667766666655 3332 3334457899999999999999976521
Q ss_pred CCCchHHHHHHHHHHhcCCchHHHHHH
Q 046770 380 SMHQPLKEIGAKIVIKCNGLPLAAKAL 406 (475)
Q Consensus 380 ~~~~~~~~~~~~I~~~c~G~PLai~~~ 406 (475)
.+ ...++..++|.|+.+..+
T Consensus 206 --~~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 --AD-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred --Ch-----HHHHHHHcCCCHHHHHHH
Confidence 11 122577789999755433
No 158
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.28 E-value=0.0017 Score=63.47 Aligned_cols=146 Identities=13% Similarity=0.083 Sum_probs=82.4
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCccccc-------------------CcCe
Q 046770 196 KVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQC-------------------HFDL 256 (475)
Q Consensus 196 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~ 256 (475)
.++|-+....++..+..... .....+.++|++|+||||+|..+.+..--.. ....
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~------~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d 75 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG------RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPD 75 (325)
T ss_pred CcccchhHHHHHHHHHHhcC------CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCc
Confidence 35667777888888887511 1223589999999999999999887421111 0112
Q ss_pred EEEEEecCCCC---HHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCCCCC
Q 046770 257 KAWTYVSQDFD---IIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPG 333 (475)
Q Consensus 257 ~~wv~v~~~~~---~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 333 (475)
...+.-+.... ..+.++.+.+....... .++.-+++||++...+.+.-..++..+......
T Consensus 76 ~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~ 139 (325)
T COG0470 76 FLELNPSDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKN 139 (325)
T ss_pred eEEecccccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCC
Confidence 22222222222 12222222222211100 256679999999777666666777777766677
Q ss_pred cEEEEecCCh-HHHH-hcCCCceeeCCCCCHH
Q 046770 334 SKIIITTRNA-DAAL-IMGTVQAYPLKGLSND 363 (475)
Q Consensus 334 s~ilvTtR~~-~v~~-~~~~~~~~~l~~L~~~ 363 (475)
+.+|++|... .+.. .......+++.+.+..
T Consensus 140 ~~~il~~n~~~~il~tI~SRc~~i~f~~~~~~ 171 (325)
T COG0470 140 TRFILITNDPSKILPTIRSRCQRIRFKPPSRL 171 (325)
T ss_pred eEEEEEcCChhhccchhhhcceeeecCCchHH
Confidence 8888888743 2222 2223355667664433
No 159
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.26 E-value=0.00061 Score=61.27 Aligned_cols=131 Identities=22% Similarity=0.234 Sum_probs=63.4
Q ss_pred ccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEec----CC--C---CHH
Q 046770 199 GRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVS----QD--F---DII 269 (475)
Q Consensus 199 GR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~----~~--~---~~~ 269 (475)
.+..+-...++.|.+ ..++.+.|++|.|||.||....-+.-..+.|+..+++.-. +. | +..
T Consensus 4 p~~~~Q~~~~~al~~----------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~ 73 (205)
T PF02562_consen 4 PKNEEQKFALDALLN----------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLE 73 (205)
T ss_dssp --SHHHHHHHHHHHH-----------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-----
T ss_pred CCCHHHHHHHHHHHh----------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHH
Confidence 445556666777764 2489999999999999998877654344667766665321 11 0 111
Q ss_pred H----HHHHHHHHhhcCCCCCCChHHHHHH------HHHHhCCc---eEEEEEECCCCCChhhHhHhhCcCCCCCCCcEE
Q 046770 270 R----VTKSILRSVAMGIVDHNDLNLLQWK------LKKQLFGK---RFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKI 336 (475)
Q Consensus 270 ~----~l~~il~~l~~~~~~~~~~~~l~~~------l~~~l~~k---r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 336 (475)
+ .+.-+...+..-. .....+.+... --.+++|+ ..+||+|++.+.+..++..++.- .+.+|++
T Consensus 74 eK~~p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~ski 149 (205)
T PF02562_consen 74 EKMEPYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKI 149 (205)
T ss_dssp ----TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EE
T ss_pred HHHHHHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEE
Confidence 1 1111111111111 12222222210 01234555 46999999988877777766544 4578999
Q ss_pred EEecCCh
Q 046770 337 IITTRNA 343 (475)
Q Consensus 337 lvTtR~~ 343 (475)
|++--..
T Consensus 150 i~~GD~~ 156 (205)
T PF02562_consen 150 IITGDPS 156 (205)
T ss_dssp EEEE---
T ss_pred EEecCce
Confidence 9998654
No 160
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.25 E-value=9.5e-05 Score=62.72 Aligned_cols=86 Identities=23% Similarity=0.073 Sum_probs=45.9
Q ss_pred EEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEE
Q 046770 227 VSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFL 306 (475)
Q Consensus 227 v~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~L 306 (475)
|.|+|++|+|||+||+.++.-. . ....-+.++...+..+++...--. .... ......+...+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~--~---~~~~~i~~~~~~~~~dl~g~~~~~-~~~~--~~~~~~l~~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL--G---RPVIRINCSSDTTEEDLIGSYDPS-NGQF--EFKDGPLVRAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH--T---CEEEEEE-TTTSTHHHHHCEEET--TTTT--CEEE-CCCTTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh--h---cceEEEEeccccccccceeeeeec-cccc--ccccccccccc-----cceeE
Confidence 6799999999999999998732 1 123345677777766554322211 0000 00000000001 17889
Q ss_pred EEEECCCCCChhhHhHhhC
Q 046770 307 LVLDDVWNENYNDWIDLSR 325 (475)
Q Consensus 307 lVlDdv~~~~~~~~~~l~~ 325 (475)
+|||++...+...+..+..
T Consensus 69 l~lDEin~a~~~v~~~L~~ 87 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLS 87 (139)
T ss_dssp EEESSCGG--HHHHHTTHH
T ss_pred EEECCcccCCHHHHHHHHH
Confidence 9999997555444444433
No 161
>PRK09183 transposase/IS protein; Provisional
Probab=97.25 E-value=0.00093 Score=63.00 Aligned_cols=100 Identities=15% Similarity=0.186 Sum_probs=50.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCce
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKR 304 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr 304 (475)
..+.|+|++|+|||+||..+..... ...+ .+.+++ ..+++..+-..... .. +...++..+ .+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~-~~G~-~v~~~~------~~~l~~~l~~a~~~-----~~---~~~~~~~~~-~~~ 165 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAV-RAGI-KVRFTT------AADLLLQLSTAQRQ-----GR---YKTTLQRGV-MAP 165 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHH-HcCC-eEEEEe------HHHHHHHHHHHHHC-----Cc---HHHHHHHHh-cCC
Confidence 3577999999999999999976321 1222 223332 22333333222111 11 122233322 344
Q ss_pred EEEEEECCCCCChhhHh--HhhCcCCCC-CCCcEEEEecCC
Q 046770 305 FLLVLDDVWNENYNDWI--DLSRPFQDG-APGSKIIITTRN 342 (475)
Q Consensus 305 ~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~ilvTtR~ 342 (475)
-++||||+.......+. .+...+... ..+ .+|+||..
T Consensus 166 dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~-s~iiTsn~ 205 (259)
T PRK09183 166 RLLIIDEIGYLPFSQEEANLFFQVIAKRYEKG-SMILTSNL 205 (259)
T ss_pred CEEEEcccccCCCChHHHHHHHHHHHHHHhcC-cEEEecCC
Confidence 59999999754322222 233322211 124 47888875
No 162
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.24 E-value=0.0016 Score=63.67 Aligned_cols=101 Identities=19% Similarity=0.195 Sum_probs=63.1
Q ss_pred HHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCe-EEEEEecCC-CCHHHHHHHHHHHhhc
Q 046770 204 REEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDL-KAWTYVSQD-FDIIRVTKSILRSVAM 281 (475)
Q Consensus 204 ~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~v~~~-~~~~~~l~~il~~l~~ 281 (475)
..++++.+..... . .-+.|+|.+|+|||||++.+++... ..+-+. ++|+.+.+. ..+.++++.+...+..
T Consensus 120 ~~RvID~l~PiGk------G-QR~LIvG~pGtGKTTLl~~la~~i~-~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vva 191 (380)
T PRK12608 120 SMRVVDLVAPIGK------G-QRGLIVAPPRAGKTVLLQQIAAAVA-ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYA 191 (380)
T ss_pred hHhhhhheeecCC------C-ceEEEECCCCCCHHHHHHHHHHHHH-hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEe
Confidence 3558888876322 1 2458999999999999999887431 122233 467666654 4677888888776665
Q ss_pred CCCCCCChHH-----HHHHHHHHh--CCceEEEEEECC
Q 046770 282 GIVDHNDLNL-----LQWKLKKQL--FGKRFLLVLDDV 312 (475)
Q Consensus 282 ~~~~~~~~~~-----l~~~l~~~l--~~kr~LlVlDdv 312 (475)
...+...... ....+-+.+ +|++.+||+|++
T Consensus 192 st~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 192 STFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 4322222111 111122222 689999999998
No 163
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.22 E-value=0.0055 Score=58.20 Aligned_cols=174 Identities=21% Similarity=0.162 Sum_probs=95.6
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCH-HHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDI-IRVTK 273 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~-~~~l~ 273 (475)
..++|-.++...+-.|+...... ++...|.|+|+.|.|||+|......+ .+..=+...-|........ .-.++
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~----gEsnsviiigprgsgkT~li~~~Ls~--~q~~~E~~l~v~Lng~~~~dk~al~ 97 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILH----GESNSVIIIGPRGSGKTILIDTRLSD--IQENGENFLLVRLNGELQTDKIALK 97 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHh----cCCCceEEEccCCCCceEeeHHHHhh--HHhcCCeEEEEEECccchhhHHHHH
Confidence 35788888888888777541111 23346789999999999999888876 2222233344444443322 23556
Q ss_pred HHHHHhhcCC----CCCCChHHHHHHHHHHhC------CceEEEEEECCCCCChh----hHhHhhCcCC-CCCCCcEEEE
Q 046770 274 SILRSVAMGI----VDHNDLNLLQWKLKKQLF------GKRFLLVLDDVWNENYN----DWIDLSRPFQ-DGAPGSKIII 338 (475)
Q Consensus 274 ~il~~l~~~~----~~~~~~~~l~~~l~~~l~------~kr~LlVlDdv~~~~~~----~~~~l~~~l~-~~~~gs~ilv 338 (475)
.|.+++..+. ....+..+...+|-..|+ +-++++|+|+++-.... -.-.+...-. ...+-|-|-+
T Consensus 98 ~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~ 177 (408)
T KOG2228|consen 98 GITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGV 177 (408)
T ss_pred HHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEe
Confidence 6666554332 112222222333333332 23688888887432111 1111111111 2234567789
Q ss_pred ecCChHHH-------HhcCCCceeeCCCCCHHHHHHHHhhccc
Q 046770 339 TTRNADAA-------LIMGTVQAYPLKGLSNDDCMCLFTQHSL 374 (475)
Q Consensus 339 TtR~~~v~-------~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 374 (475)
|||-.... .......++-+..++-++...++++...
T Consensus 178 Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 178 TTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred eccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 99974322 2222223566677888999999988763
No 164
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.21 E-value=0.0011 Score=61.72 Aligned_cols=102 Identities=14% Similarity=0.140 Sum_probs=56.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCce
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKR 304 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr 304 (475)
..+.++|.+|+|||+||..+++.... .-..+++++ ..+++..+-..... ....... +.+.+. +.
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~--~g~~v~~it------~~~l~~~l~~~~~~---~~~~~~~----~l~~l~-~~ 163 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLL--RGKSVLIIT------VADIMSAMKDTFSN---SETSEEQ----LLNDLS-NV 163 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEE------HHHHHHHHHHHHhh---ccccHHH----HHHHhc-cC
Confidence 46889999999999999999985322 222344543 34444444333321 1112222 222333 34
Q ss_pred EEEEEECCCCCChhhHhH--hhCcCCC-CCCCcEEEEecCC
Q 046770 305 FLLVLDDVWNENYNDWID--LSRPFQD-GAPGSKIIITTRN 342 (475)
Q Consensus 305 ~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~ilvTtR~ 342 (475)
=||||||+.......|.. +...+.. -...-.+|+||..
T Consensus 164 dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 164 DLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 488999997665555653 2222221 1223467777765
No 165
>PRK04296 thymidine kinase; Provisional
Probab=97.20 E-value=0.00061 Score=61.14 Aligned_cols=112 Identities=10% Similarity=-0.064 Sum_probs=59.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCC--CCChHHHHHHHHHHhCC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVD--HNDLNLLQWKLKKQLFG 302 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~--~~~~~~l~~~l~~~l~~ 302 (475)
.++.|+|+.|.||||++..++... ..+-..+..+. ..++.......++..++..... ......+...+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~--~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY--EERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH--HHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 478899999999999998887632 22222223231 1112111122334444322111 1233444555554 334
Q ss_pred ceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCCh
Q 046770 303 KRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNA 343 (475)
Q Consensus 303 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 343 (475)
+.-+||+|.+.-.+.+...++...+ ...|..||+|.+..
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~ 116 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDT 116 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCc
Confidence 4559999999654332233333332 23578999999874
No 166
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0012 Score=70.21 Aligned_cols=125 Identities=17% Similarity=0.231 Sum_probs=77.4
Q ss_pred ccccccchhHHHHHHHHhcCCCC-CCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCc---CeEEEEEecCCCCHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGT-SHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHF---DLKAWTYVSQDFDIIR 270 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~-~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~v~~~~~~~~ 270 (475)
..++|-+..+..+.+.+.....+ ...+..+.+...+||.|+|||-||+.++.. -| +..+-++.|+...
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~-----Lfg~e~aliR~DMSEy~E--- 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA-----LFGDEQALIRIDMSEYME--- 562 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH-----hcCCCccceeechHHHHH---
Confidence 46899999999988887642211 112245677888999999999999998763 13 2233333333211
Q ss_pred HHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceE-EEEEECCCCCChhhHhHhhCcCCCC
Q 046770 271 VTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRF-LLVLDDVWNENYNDWIDLSRPFQDG 330 (475)
Q Consensus 271 ~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~ 330 (475)
+.-+..|-+..++--..++ ...|-+....++| +|.||++....++-+.-++..|.++
T Consensus 563 --kHsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 563 --KHSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred --HHHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 2223344444443222222 2356666677888 7788999888777777777777644
No 167
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.18 E-value=0.0022 Score=58.00 Aligned_cols=122 Identities=21% Similarity=0.258 Sum_probs=68.9
Q ss_pred cccccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHH
Q 046770 192 VHEAKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRV 271 (475)
Q Consensus 192 ~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~ 271 (475)
++-..++|-+...+.|++-...--.+ ....-|.+||-.|+|||+|++.+.+.. ....-- -|.|...
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G----~pANnVLLwGaRGtGKSSLVKA~~~e~--~~~glr--LVEV~k~------ 122 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEG----LPANNVLLWGARGTGKSSLVKALLNEY--ADEGLR--LVEVDKE------ 122 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcC----CcccceEEecCCCCChHHHHHHHHHHH--HhcCCe--EEEEcHH------
Confidence 44457899998888887654321111 233468899999999999999998843 222211 2222220
Q ss_pred HHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCC-CCChhhHhHhhCcCCCC---CCCcEEEEecCC
Q 046770 272 TKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVW-NENYNDWIDLSRPFQDG---APGSKIIITTRN 342 (475)
Q Consensus 272 l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~-~~~~~~~~~l~~~l~~~---~~gs~ilvTtR~ 342 (475)
+..++..+...|+. ...||+|..||+- +.....+..+...|..+ .+...++..|.+
T Consensus 123 -------------dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 123 -------------DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred -------------HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 11111222222222 3578999999983 22334677777666532 233344544544
No 168
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.16 E-value=0.00041 Score=67.48 Aligned_cols=52 Identities=15% Similarity=0.253 Sum_probs=41.7
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCc
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDS 248 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 248 (475)
.+++|-++.++++++++.....+.. ..-+++.|+|++|+||||||+.+.+..
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~--~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLE--ERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCC--CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3799999999999999976332212 345889999999999999999998743
No 169
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.16 E-value=0.0013 Score=60.10 Aligned_cols=86 Identities=15% Similarity=0.131 Sum_probs=51.9
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHh----hcCC--CCCCChH---HHH
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSV----AMGI--VDHNDLN---LLQ 293 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l----~~~~--~~~~~~~---~l~ 293 (475)
.-+++.|+|++|+|||+++.+++.+. ...-..++|++... ++...+.+. .... ..+. ....+.. ...
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~--~~~g~~v~yi~~e~-~~~~rl~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNA--ARQGKKVVYIDTEG-LSPERFKQI-AEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEECCC-CCHHHHHHH-HHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 34799999999999999999987642 23346789998876 665554432 2221 1110 0111222 234
Q ss_pred HHHHHHhCC-ceEEEEEECC
Q 046770 294 WKLKKQLFG-KRFLLVLDDV 312 (475)
Q Consensus 294 ~~l~~~l~~-kr~LlVlDdv 312 (475)
..+.+.+.. +.-+||+|.+
T Consensus 87 ~~l~~~~~~~~~~lvVIDSi 106 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSF 106 (209)
T ss_pred HHHHHHHhhcCccEEEEeCc
Confidence 444444533 4568999998
No 170
>PRK07261 topology modulation protein; Provisional
Probab=97.15 E-value=0.0012 Score=58.18 Aligned_cols=22 Identities=41% Similarity=0.643 Sum_probs=19.6
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 046770 226 VVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.|.|+|++|+||||||+.+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 171
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.14 E-value=0.00057 Score=66.50 Aligned_cols=102 Identities=18% Similarity=0.203 Sum_probs=53.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCce
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKR 304 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr 304 (475)
..+.++|..|+|||.||..+++... ... ..++++++.. ++..+...-. . ...+... .+.. +. .-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~-~~g-~~V~y~t~~~------l~~~l~~~~~-~--~~~~~~~---~~~~-l~-~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELL-DRG-KSVIYRTADE------LIEILREIRF-N--NDKELEE---VYDL-LI-NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH-HCC-CeEEEEEHHH------HHHHHHHHHh-c--cchhHHH---HHHH-hc-cC
Confidence 4689999999999999999988532 222 2455554432 3333322111 1 1111111 1222 22 22
Q ss_pred EEEEEECCCCCChhhHhH--hhCcCCCC-CCCcEEEEecCC
Q 046770 305 FLLVLDDVWNENYNDWID--LSRPFQDG-APGSKIIITTRN 342 (475)
Q Consensus 305 ~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~ilvTtR~ 342 (475)
=||||||+.......|.. +...+... ..+..+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 489999997654334432 33333211 234568888875
No 172
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.13 E-value=0.0038 Score=57.10 Aligned_cols=178 Identities=15% Similarity=0.128 Sum_probs=94.2
Q ss_pred ccccccchhHH---HHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHH
Q 046770 195 AKVYGRSKERE---EIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRV 271 (475)
Q Consensus 195 ~~~vGR~~e~~---~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~ 271 (475)
.+++|.+..+. -|++.|.+...-+. .-++-|..+|++|.|||.+|+.+++..++ .| +.+.. .++
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~--WAPknVLFyGppGTGKTm~Akalane~kv--p~-----l~vka----t~l 187 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGD--WAPKNVLFYGPPGTGKTMMAKALANEAKV--PL-----LLVKA----TEL 187 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcc--cCcceeEEECCCCccHHHHHHHHhcccCC--ce-----EEech----HHH
Confidence 46888776543 35667766332233 45678999999999999999999995432 22 22211 111
Q ss_pred HHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCC------------hhhHhHhhCcCC--CCCCCcEEE
Q 046770 272 TKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNEN------------YNDWIDLSRPFQ--DGAPGSKII 337 (475)
Q Consensus 272 l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~------------~~~~~~l~~~l~--~~~~gs~il 337 (475)
|-+..+ +...+..+...+.-+.-+|++.||.+.-.. .+....++..+. ..+.|...|
T Consensus 188 ---iGehVG------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 188 ---IGEHVG------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred ---HHHHhh------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEE
Confidence 111111 111222222223334568999999983210 011223333332 234576777
Q ss_pred EecCChHHHHhc---CCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCc
Q 046770 338 ITTRNADAALIM---GTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGL 399 (475)
Q Consensus 338 vTtR~~~v~~~~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~ 399 (475)
-.|...+..... .-...++.+--+.++-..++...+-.-.- ....-.+.++++.+|+
T Consensus 259 aaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Pl-----pv~~~~~~~~~~t~g~ 318 (368)
T COG1223 259 AATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPL-----PVDADLRYLAAKTKGM 318 (368)
T ss_pred eecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCC-----ccccCHHHHHHHhCCC
Confidence 777766544321 11244666666778888888776532211 1111134466666665
No 173
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.12 E-value=0.0038 Score=61.37 Aligned_cols=90 Identities=11% Similarity=0.130 Sum_probs=48.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCC--HHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHh
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFD--IIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQL 300 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~--~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l 300 (475)
+.++|+|+|++|+||||++..++.... ...+ .+..++.. ++. ..+-+....+.++.......+...+...+...-
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~-~~Gk-kVglI~aD-t~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH-GKKK-TVGFITTD-HSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH-HcCC-cEEEEecC-CcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH
Confidence 457999999999999999999876332 1112 23334332 232 222333333333322222345555555555443
Q ss_pred CC-ceEEEEEECCCCC
Q 046770 301 FG-KRFLLVLDDVWNE 315 (475)
Q Consensus 301 ~~-kr~LlVlDdv~~~ 315 (475)
.. +.=+|++|-....
T Consensus 317 ~~~~~DvVLIDTaGRs 332 (436)
T PRK11889 317 EEARVDYILIDTAGKN 332 (436)
T ss_pred hccCCCEEEEeCcccc
Confidence 21 2237778877543
No 174
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.12 E-value=0.007 Score=66.08 Aligned_cols=182 Identities=15% Similarity=0.100 Sum_probs=93.0
Q ss_pred ccccccchhHHHHHHHHhcCCCC-----CCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGT-----SHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDII 269 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~-----~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 269 (475)
.++.|.+..++.|.+.+.-.-.. .-.....+-+.++|++|+|||+||+.+++.. ...| +.+.. .
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~--~~~f-----i~v~~----~ 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES--GANF-----IAVRG----P 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc--CCCE-----EEEeh----H
Confidence 34678777777776654310000 0000223457899999999999999999843 2222 22221 1
Q ss_pred HHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCC--------Ch----hhHhHhhCcCCC--CCCCcE
Q 046770 270 RVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNE--------NY----NDWIDLSRPFQD--GAPGSK 335 (475)
Q Consensus 270 ~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~--------~~----~~~~~l~~~l~~--~~~gs~ 335 (475)
+++... .......+...+...-...+.+|+||++... .. ....+++..+.. ...+.-
T Consensus 522 ----~l~~~~-----vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~ 592 (733)
T TIGR01243 522 ----EILSKW-----VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVV 592 (733)
T ss_pred ----HHhhcc-----cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEE
Confidence 111111 1111222222333333456799999998421 00 011223333321 223456
Q ss_pred EEEecCChHHHH--hc---CCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchH
Q 046770 336 IIITTRNADAAL--IM---GTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPL 401 (475)
Q Consensus 336 ilvTtR~~~v~~--~~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL 401 (475)
||.||..++... .. .-...+.+...+.++-.++|+.+..... .....++ ..+++.|.|.--
T Consensus 593 vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~-~~~~~~l----~~la~~t~g~sg 658 (733)
T TIGR01243 593 VIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMP-LAEDVDL----EELAEMTEGYTG 658 (733)
T ss_pred EEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCC-CCccCCH----HHHHHHcCCCCH
Confidence 677776654321 11 1235677888888888888876543221 1112223 347777877643
No 175
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.10 E-value=0.0027 Score=70.03 Aligned_cols=137 Identities=15% Similarity=0.145 Sum_probs=75.8
Q ss_pred ccccccchhHHHHHHHHhcCCCC-CCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGT-SHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTK 273 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~-~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~ 273 (475)
..++|-+.-++.|...+.....+ ...+.....+.++|+.|+|||+||+.+++.. -..-...+-++.++-.+...+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l--~~~~~~~~~~d~s~~~~~~~~-- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF--FGSEDAMIRLDMSEYMEKHTV-- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh--cCCccceEEEEchhccccccH--
Confidence 45889888888888877531110 0111234567799999999999999987631 111112233333332221111
Q ss_pred HHHHHhhcCCCC---CCChHHHHHHHHHHhCCce-EEEEEECCCCCChhhHhHhhCcCCCC-----------CCCcEEEE
Q 046770 274 SILRSVAMGIVD---HNDLNLLQWKLKKQLFGKR-FLLVLDDVWNENYNDWIDLSRPFQDG-----------APGSKIII 338 (475)
Q Consensus 274 ~il~~l~~~~~~---~~~~~~l~~~l~~~l~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilv 338 (475)
..+.+..++ ..... .|.+.+..++ -+++||++...+...+..++..+..+ ...+-||+
T Consensus 585 ---~~l~g~~~gyvg~~~~~----~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~ 657 (821)
T CHL00095 585 ---SKLIGSPPGYVGYNEGG----QLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIM 657 (821)
T ss_pred ---HHhcCCCCcccCcCccc----hHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEE
Confidence 111111111 11212 2344444454 48889999888777777777766543 23456777
Q ss_pred ecCC
Q 046770 339 TTRN 342 (475)
Q Consensus 339 TtR~ 342 (475)
||..
T Consensus 658 Tsn~ 661 (821)
T CHL00095 658 TSNL 661 (821)
T ss_pred eCCc
Confidence 7775
No 176
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0043 Score=66.07 Aligned_cols=156 Identities=19% Similarity=0.173 Sum_probs=83.7
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCc---ccccCc-CeEEEEEecCCCCHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDS---RVQCHF-DLKAWTYVSQDFDIIR 270 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~---~~~~~F-~~~~wv~v~~~~~~~~ 270 (475)
..++||++|++++++.|.. .. .+.+ .++|.+|+|||+++.-++... .+-... +..++.
T Consensus 170 DPvIGRd~EI~r~iqIL~R-R~-----KNNP--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s---------- 231 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSR-RT-----KNNP--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS---------- 231 (786)
T ss_pred CCCcChHHHHHHHHHHHhc-cC-----CCCC--eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE----------
Confidence 3589999999999999976 22 1222 478999999999987666521 111110 111111
Q ss_pred HHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCC----C----hhhHhHhhCcCCCCCCCcEEEEecCC
Q 046770 271 VTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNE----N----YNDWIDLSRPFQDGAPGSKIIITTRN 342 (475)
Q Consensus 271 ~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~----~----~~~~~~l~~~l~~~~~gs~ilvTtR~ 342 (475)
-++..-+.+......-.+.+...+.+.-+..+.+|++|.++.. . ..+-..++.+....+.--.|-.||-+
T Consensus 232 --LD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~ 309 (786)
T COG0542 232 --LDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLD 309 (786)
T ss_pred --ecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHH
Confidence 1111122222222222233333344443455899999999642 0 01122333333222222244455544
Q ss_pred hHHHH-------hcCCCceeeCCCCCHHHHHHHHhh
Q 046770 343 ADAAL-------IMGTVQAYPLKGLSNDDCMCLFTQ 371 (475)
Q Consensus 343 ~~v~~-------~~~~~~~~~l~~L~~~~~~~lf~~ 371 (475)
+ .-. ....++.+.+..-+.+++..+++.
T Consensus 310 E-YRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrG 344 (786)
T COG0542 310 E-YRKYIEKDAALERRFQKVLVDEPSVEDTIAILRG 344 (786)
T ss_pred H-HHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHH
Confidence 3 221 123567788999999999888874
No 177
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.10 E-value=0.0013 Score=57.64 Aligned_cols=129 Identities=18% Similarity=0.096 Sum_probs=65.8
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHH
Q 046770 197 VYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSIL 276 (475)
Q Consensus 197 ~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il 276 (475)
++|....+.++.+.+..... .. .-|.|+|..|+||+.+|+.+.+..... -..-+-|+++.- +... +-
T Consensus 1 liG~s~~m~~~~~~~~~~a~-----~~-~pVlI~GE~GtGK~~lA~~IH~~s~r~--~~pfi~vnc~~~-~~~~----~e 67 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS-----SD-LPVLITGETGTGKELLARAIHNNSPRK--NGPFISVNCAAL-PEEL----LE 67 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT-----ST-S-EEEECSTTSSHHHHHHHHHHCSTTT--TS-EEEEETTTS--HHH----HH
T ss_pred CEeCCHHHHHHHHHHHHHhC-----CC-CCEEEEcCCCCcHHHHHHHHHHhhhcc--cCCeEEEehhhh-hcch----hh
Confidence 46777888888887765221 22 346699999999999999999843211 112233444432 2222 22
Q ss_pred HHhhcCCCC----CCChHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCC------CC-----CCcEEEEecC
Q 046770 277 RSVAMGIVD----HNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQD------GA-----PGSKIIITTR 341 (475)
Q Consensus 277 ~~l~~~~~~----~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~------~~-----~gs~ilvTtR 341 (475)
..+.+...+ ..... .-.+... ..=-|+||++..........+...+.. +. ..+|||.||.
T Consensus 68 ~~LFG~~~~~~~~~~~~~--~G~l~~A---~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~ 142 (168)
T PF00158_consen 68 SELFGHEKGAFTGARSDK--KGLLEQA---NGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTS 142 (168)
T ss_dssp HHHHEBCSSSSTTTSSEB--EHHHHHT---TTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEES
T ss_pred hhhhcccccccccccccc--CCceeec---cceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecC
Confidence 333333211 11100 0122222 223688999987765555555444331 11 2568899888
Q ss_pred Ch
Q 046770 342 NA 343 (475)
Q Consensus 342 ~~ 343 (475)
..
T Consensus 143 ~~ 144 (168)
T PF00158_consen 143 KD 144 (168)
T ss_dssp S-
T ss_pred cC
Confidence 63
No 178
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.06 E-value=0.00057 Score=57.92 Aligned_cols=108 Identities=19% Similarity=0.138 Sum_probs=61.3
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCccc-ccCcCeEEEEEecCCCCHHHHHHHHH
Q 046770 198 YGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRV-QCHFDLKAWTYVSQDFDIIRVTKSIL 276 (475)
Q Consensus 198 vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~~F~~~~wv~v~~~~~~~~~l~~il 276 (475)
||+...++++.+.+.... ....-|.|+|..|+||+++|+.++..... ...|... .+... + .++
T Consensus 1 vG~S~~~~~l~~~l~~~a------~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~~-~-----~~~- 64 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA------KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCASL-P-----AEL- 64 (138)
T ss_dssp --SCHHHHHHHHHHHHHH------CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHCT-C-----HHH-
T ss_pred CCCCHHHHHHHHHHHHHh------CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhhC-c-----HHH-
Confidence 466666777766665422 12245789999999999999998875322 1122111 11110 0 111
Q ss_pred HHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCC-CCCCcEEEEecCCh
Q 046770 277 RSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQD-GAPGSKIIITTRNA 343 (475)
Q Consensus 277 ~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~ilvTtR~~ 343 (475)
+.. .+.-.|+|+|+..-+......+...+.. .....|+|.||+.+
T Consensus 65 -------------------l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 65 -------------------LEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp -------------------HHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred -------------------HHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 111 1344678999987776666666655542 25678999999863
No 179
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.04 E-value=0.0018 Score=59.79 Aligned_cols=85 Identities=18% Similarity=0.132 Sum_probs=50.6
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHH----hhcCC--CCCCChHH---HHH
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRS----VAMGI--VDHNDLNL---LQW 294 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~----l~~~~--~~~~~~~~---l~~ 294 (475)
-.++.|+|.+|+|||++|.+++.+. ...-..++|++.. .++...+. ++... +.... ....+... ..+
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~--~~~~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 98 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEA--AKNGKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIFEPSSFEEQSEAIR 98 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEEeCCCHHHHHHHHH
Confidence 3799999999999999999988643 2233567899887 55554432 23222 11000 01222222 233
Q ss_pred HHHHHhCCceEEEEEECC
Q 046770 295 KLKKQLFGKRFLLVLDDV 312 (475)
Q Consensus 295 ~l~~~l~~kr~LlVlDdv 312 (475)
.+...+..+.-++|+|.+
T Consensus 99 ~~~~~~~~~~~lvVIDsi 116 (225)
T PRK09361 99 KAEKLAKENVGLIVLDSA 116 (225)
T ss_pred HHHHHHHhcccEEEEeCc
Confidence 344444456679999998
No 180
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.03 E-value=0.0033 Score=58.09 Aligned_cols=89 Identities=16% Similarity=0.083 Sum_probs=54.6
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcCccccc----CcCeEEEEEecCCCCHHHHHHHHHHHhhcCC---------CCCCChH
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYNDSRVQC----HFDLKAWTYVSQDFDIIRVTKSILRSVAMGI---------VDHNDLN 290 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~---------~~~~~~~ 290 (475)
-.++.|+|++|+|||+|+.+++....... .=..++|++....++...+. .+........ ....+.+
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYNGE 97 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCCHH
Confidence 36899999999999999999876421111 11457899888777765543 3333322110 1223455
Q ss_pred HHHHHHHHHhC----CceEEEEEECCC
Q 046770 291 LLQWKLKKQLF----GKRFLLVLDDVW 313 (475)
Q Consensus 291 ~l~~~l~~~l~----~kr~LlVlDdv~ 313 (475)
++...+..... .+.-|+|+|.+.
T Consensus 98 ~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 98 QQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred HHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 55555555442 345599999983
No 181
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.03 E-value=0.0023 Score=69.11 Aligned_cols=136 Identities=15% Similarity=0.162 Sum_probs=73.2
Q ss_pred cccccchhHHHHHHHHhcCCCC-CCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHH
Q 046770 196 KVYGRSKEREEIVELLLKEDGT-SHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKS 274 (475)
Q Consensus 196 ~~vGR~~e~~~l~~~L~~~~~~-~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~ 274 (475)
.++|-+..++.|.+.+.....+ ...+.....+.++|++|+|||+||+.++... .. ..+.+++++.....
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l--~~---~~i~id~se~~~~~----- 528 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--GI---ELLRFDMSEYMERH----- 528 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh--CC---CcEEeechhhcccc-----
Confidence 4788888888888877631110 0001334578999999999999999998743 21 22333333322111
Q ss_pred HHHHhhcCCCCCCChHHHHHHHHHHhCCc-eEEEEEECCCCCChhhHhHhhCcCCCCC-----------CCcEEEEecCC
Q 046770 275 ILRSVAMGIVDHNDLNLLQWKLKKQLFGK-RFLLVLDDVWNENYNDWIDLSRPFQDGA-----------PGSKIIITTRN 342 (475)
Q Consensus 275 il~~l~~~~~~~~~~~~l~~~l~~~l~~k-r~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~ 342 (475)
....+.+..++....+ ....+.+.+..+ ..+|+||++.....+.+..++..|..+. .++-||+||..
T Consensus 529 ~~~~LiG~~~gyvg~~-~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~ 607 (758)
T PRK11034 529 TVSRLIGAPPGYVGFD-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNA 607 (758)
T ss_pred cHHHHcCCCCCccccc-ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCc
Confidence 1122222221111100 011233333333 4599999998877777777766554321 23447777763
No 182
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.02 Score=57.55 Aligned_cols=145 Identities=16% Similarity=0.142 Sum_probs=82.5
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHH----
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLK---- 297 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~---- 297 (475)
..+..|.+.|++|+|||+||..++.+ ..|..+--++-.+. -..+...-...++
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiSpe~m-------------------iG~sEsaKc~~i~k~F~ 592 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIISPEDM-------------------IGLSESAKCAHIKKIFE 592 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeChHHc-------------------cCccHHHHHHHHHHHHH
Confidence 45677889999999999999999873 34654332221110 0111122222333
Q ss_pred HHhCCceEEEEEECCCCCChhhHhH---------------hhCcCCCCCCCcEEEEecCChHHHHhcCC----CceeeCC
Q 046770 298 KQLFGKRFLLVLDDVWNENYNDWID---------------LSRPFQDGAPGSKIIITTRNADAALIMGT----VQAYPLK 358 (475)
Q Consensus 298 ~~l~~kr~LlVlDdv~~~~~~~~~~---------------l~~~l~~~~~gs~ilvTtR~~~v~~~~~~----~~~~~l~ 358 (475)
..-++.--.||+||+.. ..+|-. ++...++.+..--|+-||....+...|+- ...+.+.
T Consensus 593 DAYkS~lsiivvDdiEr--LiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vp 670 (744)
T KOG0741|consen 593 DAYKSPLSIIVVDDIER--LLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVP 670 (744)
T ss_pred HhhcCcceEEEEcchhh--hhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecC
Confidence 33355667999999932 223322 22223333334445667777788777662 3568888
Q ss_pred CCCH-HHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhc
Q 046770 359 GLSN-DDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKC 396 (475)
Q Consensus 359 ~L~~-~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c 396 (475)
.++. ++..+.+...-. -.+.....++.+...+|
T Consensus 671 nl~~~~~~~~vl~~~n~-----fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 671 NLTTGEQLLEVLEELNI-----FSDDEVRAIAEQLLSKK 704 (744)
T ss_pred ccCchHHHHHHHHHccC-----CCcchhHHHHHHHhccc
Confidence 8887 777777765421 11233455556666655
No 183
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.02 E-value=0.00049 Score=56.69 Aligned_cols=22 Identities=41% Similarity=0.502 Sum_probs=20.3
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 046770 226 VVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
+|+|.|++|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999883
No 184
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.00 E-value=0.0032 Score=58.50 Aligned_cols=89 Identities=19% Similarity=0.159 Sum_probs=54.1
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcCcccccC----cCeEEEEEecCCCCHHHHHHHHHHHhhcCCC---------CCCChH
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYNDSRVQCH----FDLKAWTYVSQDFDIIRVTKSILRSVAMGIV---------DHNDLN 290 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~---------~~~~~~ 290 (475)
-.++.|+|++|+|||+|+.+++........ -..++|++....++..++. ++.+....... ...+..
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYNSD 97 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCCHH
Confidence 478999999999999999999753222221 3578999988877765443 33333322110 112222
Q ss_pred ---HHHHHHHHHh-CC-ceEEEEEECCC
Q 046770 291 ---LLQWKLKKQL-FG-KRFLLVLDDVW 313 (475)
Q Consensus 291 ---~l~~~l~~~l-~~-kr~LlVlDdv~ 313 (475)
.....+...+ +. +.-|||+|.+.
T Consensus 98 ~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 98 HQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 2334444444 33 56799999983
No 185
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.99 E-value=0.0022 Score=60.18 Aligned_cols=80 Identities=24% Similarity=0.280 Sum_probs=47.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCce
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKR 304 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr 304 (475)
.-+.++|.+|+|||.||..+.+... +..+. +.+++ ..+++.++-...... .....|.+.+ .+-
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~s-v~f~~------~~el~~~Lk~~~~~~--------~~~~~l~~~l-~~~ 168 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELL-KAGIS-VLFIT------APDLLSKLKAAFDEG--------RLEEKLLREL-KKV 168 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH-HcCCe-EEEEE------HHHHHHHHHHHHhcC--------chHHHHHHHh-hcC
Confidence 3578999999999999999998643 33333 34443 344555555444321 1112233322 122
Q ss_pred EEEEEECCCCCChhhHh
Q 046770 305 FLLVLDDVWNENYNDWI 321 (475)
Q Consensus 305 ~LlVlDdv~~~~~~~~~ 321 (475)
=||||||+.......|.
T Consensus 169 dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 169 DLLIIDDIGYEPFSQEE 185 (254)
T ss_pred CEEEEecccCccCCHHH
Confidence 39999999765544444
No 186
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.97 E-value=0.0098 Score=64.93 Aligned_cols=181 Identities=15% Similarity=0.087 Sum_probs=90.0
Q ss_pred ccccccchhHHHHHHHHhcCCCC-----CCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGT-----SHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDII 269 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~-----~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 269 (475)
.++.|.+..+++|.+.+...-.. .-.-...+.+.++|++|+|||+||+.+++.. ...| +.++..
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~--~~~~-----i~i~~~---- 246 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA--GAYF-----ISINGP---- 246 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh--CCeE-----EEEecH----
Confidence 35789999998887776321000 0000223568899999999999999998842 2222 222211
Q ss_pred HHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCC-----------hhhHhHhhCcCCCC-CCCcEEE
Q 046770 270 RVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNEN-----------YNDWIDLSRPFQDG-APGSKII 337 (475)
Q Consensus 270 ~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~~-~~gs~il 337 (475)
++. ... .......+...+.......+.+|+|||+.... ......+...+... ..+..++
T Consensus 247 ~i~----~~~-----~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~viv 317 (733)
T TIGR01243 247 EIM----SKY-----YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIV 317 (733)
T ss_pred HHh----ccc-----ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEE
Confidence 111 000 01111223333333445567899999984311 01122233333211 2233344
Q ss_pred E-ecCChH-HHHhcC----CCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCch
Q 046770 338 I-TTRNAD-AALIMG----TVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLP 400 (475)
Q Consensus 338 v-TtR~~~-v~~~~~----~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P 400 (475)
+ ||.... +...+. -...+.+...+.++-.+++..+.-...- .... ....+++.+.|..
T Consensus 318 I~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l-~~d~----~l~~la~~t~G~~ 381 (733)
T TIGR01243 318 IGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPL-AEDV----DLDKLAEVTHGFV 381 (733)
T ss_pred EeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCC-cccc----CHHHHHHhCCCCC
Confidence 4 554432 111111 1245777788888888888754322110 1111 2345777787764
No 187
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.96 E-value=0.0067 Score=58.00 Aligned_cols=86 Identities=16% Similarity=0.190 Sum_probs=45.8
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcCcccc-cCcCeEEEEEecCCCC--HHHHHHHHHHHhhcCCCCCCChHHHHHHHHHH
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYNDSRVQ-CHFDLKAWTYVSQDFD--IIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQ 299 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv~v~~~~~--~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~ 299 (475)
...++.|+|++|+||||++..++...... ..+ .+..++... +. ..+.+....+.++.......+...+...+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~-~V~li~~D~-~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~ 270 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNK-KVALITTDT-YRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL 270 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCC-eEEEEECCc-cchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc
Confidence 45799999999999999998887643222 112 334444332 22 22233333333332222233444555555443
Q ss_pred hCCceEEEEEECC
Q 046770 300 LFGKRFLLVLDDV 312 (475)
Q Consensus 300 l~~kr~LlVlDdv 312 (475)
.+ .=+|++|..
T Consensus 271 -~~-~d~vliDt~ 281 (282)
T TIGR03499 271 -RD-KDLILIDTA 281 (282)
T ss_pred -cC-CCEEEEeCC
Confidence 33 347777754
No 188
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.012 Score=60.09 Aligned_cols=155 Identities=19% Similarity=0.204 Sum_probs=87.4
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCc
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGK 303 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 303 (475)
..-|.++|++|.|||-||++|+|. .+-.| ++|..+ +++...-+ .....+....++.=..-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANE--ag~NF-----isVKGP--------ELlNkYVG-----ESErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANE--AGANF-----ISVKGP--------ELLNKYVG-----ESERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhh--ccCce-----EeecCH--------HHHHHHhh-----hHHHHHHHHHHHhhcCC
Confidence 345789999999999999999995 34444 444442 22222211 12222233333333567
Q ss_pred eEEEEEECCCCC-----C------hhhHhHhhCcCCC--CCCCcEEEEecCChHHHH--hcCC---CceeeCCCCCHHHH
Q 046770 304 RFLLVLDDVWNE-----N------YNDWIDLSRPFQD--GAPGSKIIITTRNADAAL--IMGT---VQAYPLKGLSNDDC 365 (475)
Q Consensus 304 r~LlVlDdv~~~-----~------~~~~~~l~~~l~~--~~~gs~ilvTtR~~~v~~--~~~~---~~~~~l~~L~~~~~ 365 (475)
+++|+||.+... + .....+++..+.. ...|.-||-.|..+++.. .+.. ...+-+..-+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 999999998421 0 1113344444432 235666777776665532 2222 24556667778888
Q ss_pred HHHHhhcccCCCCC-CCCchHHHHHHHHHHhcCCch
Q 046770 366 MCLFTQHSLETRDF-SMHQPLKEIGAKIVIKCNGLP 400 (475)
Q Consensus 366 ~~lf~~~~~~~~~~-~~~~~~~~~~~~I~~~c~G~P 400 (475)
.++++...-....+ ..+-.+++|+.. .+|.|..
T Consensus 685 ~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 685 VAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 88998776532222 223356665543 3566654
No 189
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.94 E-value=0.043 Score=57.18 Aligned_cols=202 Identities=12% Similarity=0.041 Sum_probs=116.5
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcc------cccCcCeEEEEEecCCCCHH
Q 046770 196 KVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSR------VQCHFDLKAWTYVSQDFDII 269 (475)
Q Consensus 196 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~------~~~~F~~~~wv~v~~~~~~~ 269 (475)
.+-+|+.|..+|.+.+...-.. + ..-+.+-|.|.+|+|||..+..|.+... ....|+ .+.|+.-.-..+.
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~-~--~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~ 472 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISD-Q--GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPR 472 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCC-C--CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHH
Confidence 4779999999998887652222 1 2335889999999999999999987432 112233 3344444555788
Q ss_pred HHHHHHHHHhhcCCCCCCChHHHHHHHHHHhC-----CceEEEEEECCCCCChhhHhHhhCcCC-CCCCCcEEEEecCCh
Q 046770 270 RVTKSILRSVAMGIVDHNDLNLLQWKLKKQLF-----GKRFLLVLDDVWNENYNDWIDLSRPFQ-DGAPGSKIIITTRNA 343 (475)
Q Consensus 270 ~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~-----~kr~LlVlDdv~~~~~~~~~~l~~~l~-~~~~gs~ilvTtR~~ 343 (475)
+++..|..++.+.... .......|..++. .+.+++++|++...-....+-+...|. ....+|+++|-+=..
T Consensus 473 ~~Y~~I~~~lsg~~~~---~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaN 549 (767)
T KOG1514|consen 473 EIYEKIWEALSGERVT---WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIAN 549 (767)
T ss_pred HHHHHHHHhcccCccc---HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecc
Confidence 9999999999876422 2333444554443 446888889873211111223333443 344677766544211
Q ss_pred -----------HHHHhcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHH
Q 046770 344 -----------DAALIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKAL 406 (475)
Q Consensus 344 -----------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 406 (475)
.++..+ +...+...|-++++-.++...+..+... ......+-++++++.-.|-.-.|+.+.
T Consensus 550 TmdlPEr~l~nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL~~~~~-f~~~aielvarkVAavSGDaRraldic 621 (767)
T KOG1514|consen 550 TMDLPERLLMNRVSSRL-GLTRICFQPYTHEQLQEIISARLKGLDA-FENKAIELVARKVAAVSGDARRALDIC 621 (767)
T ss_pred cccCHHHHhccchhhhc-cceeeecCCCCHHHHHHHHHHhhcchhh-cchhHHHHHHHHHHhccccHHHHHHHH
Confidence 111111 3355777888888888888776654422 222333444455554444444444433
No 190
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.92 E-value=0.0014 Score=58.08 Aligned_cols=36 Identities=28% Similarity=0.472 Sum_probs=27.4
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEE
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWT 260 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 260 (475)
...+|.+.|+.|+||||+|+.+++. ....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~--l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYER--LKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEE
Confidence 4469999999999999999999883 34444445554
No 191
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.92 E-value=0.011 Score=57.49 Aligned_cols=71 Identities=13% Similarity=0.218 Sum_probs=46.0
Q ss_pred CceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCChH-HHH-hcCCCceeeCCCCCHHHHHHHHhhc
Q 046770 302 GKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNAD-AAL-IMGTVQAYPLKGLSNDDCMCLFTQH 372 (475)
Q Consensus 302 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~-~~~~~~~~~l~~L~~~~~~~lf~~~ 372 (475)
+++=++|+|++...+...-..++..+.....++.+|++|.+.. +.. ..+....+.+.+++.+++.+.+.+.
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 3444556788877766666666665553334566777777643 332 2223467889999999999888754
No 192
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.91 E-value=0.0028 Score=58.17 Aligned_cols=85 Identities=20% Similarity=0.097 Sum_probs=48.1
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHh----hcCC--CCCCChHH---HHH
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSV----AMGI--VDHNDLNL---LQW 294 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l----~~~~--~~~~~~~~---l~~ 294 (475)
-.++.|.|.+|+||||||.+++... ...-..++|++....+. +-+.++.... .... ....+..+ ...
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~--~~~g~~v~yi~~e~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVET--AGQGKKVAYIDTEGLSS--ERFRQIAGDRPERAASSIIVFEPMDFNEQGRAIQ 94 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCCCCH--HHHHHHHhHChHhhhcCEEEEeCCCHHHHHHHHH
Confidence 4789999999999999999988642 22223567887665554 3333433321 1110 01222222 223
Q ss_pred HHHHHhCCceEEEEEECC
Q 046770 295 KLKKQLFGKRFLLVLDDV 312 (475)
Q Consensus 295 ~l~~~l~~kr~LlVlDdv 312 (475)
.+...+..+.-++|+|.+
T Consensus 95 ~~~~~~~~~~~lvvIDsi 112 (218)
T cd01394 95 ETETFADEKVDLVVVDSA 112 (218)
T ss_pred HHHHHHhcCCcEEEEech
Confidence 344444444568888887
No 193
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.89 E-value=0.004 Score=64.76 Aligned_cols=77 Identities=22% Similarity=0.208 Sum_probs=55.9
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhC
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLF 301 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 301 (475)
+.-+++.++|++|+||||||+.++.+. .| -++=|+.|+.-+...+-..|...+..+..... .
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa----GY-sVvEINASDeRt~~~v~~kI~~avq~~s~l~a-------------d 385 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA----GY-SVVEINASDERTAPMVKEKIENAVQNHSVLDA-------------D 385 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc----Cc-eEEEecccccccHHHHHHHHHHHHhhcccccc-------------C
Confidence 556899999999999999999999842 23 25667888887777777777666554321111 2
Q ss_pred CceEEEEEECCCCCC
Q 046770 302 GKRFLLVLDDVWNEN 316 (475)
Q Consensus 302 ~kr~LlVlDdv~~~~ 316 (475)
+++.-||+|.+....
T Consensus 386 srP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 386 SRPVCLVIDEIDGAP 400 (877)
T ss_pred CCcceEEEecccCCc
Confidence 678889999997654
No 194
>PTZ00494 tuzin-like protein; Provisional
Probab=96.89 E-value=0.095 Score=52.12 Aligned_cols=169 Identities=12% Similarity=0.119 Sum_probs=101.5
Q ss_pred CcccccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHH
Q 046770 191 LVHEAKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIR 270 (475)
Q Consensus 191 ~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 270 (475)
+.....++.|+.|-..+-+.|...+. ..++++.+.|.-|.||++|.+....... -..++|.+....|
T Consensus 367 ~a~~~~~V~R~~eE~~vRqvL~qld~-----aHPRIvV~TG~~GcGKSslcRsAvrkE~-----~paV~VDVRg~ED--- 433 (664)
T PTZ00494 367 AAAEAFEVRREDEEALVRSVLTQMAP-----SHPRIVALAGGSGGGRCVPCRRAVRVEG-----VALVHVDVGGTED--- 433 (664)
T ss_pred ccccccccchhhHHHHHHHHHhhccC-----CCCcEEEEecCCCCCchHHHHHHHHHcC-----CCeEEEEecCCcc---
Confidence 33456789999988888887766332 5679999999999999999998876432 2456788777554
Q ss_pred HHHHHHHHhhcCCCC--CCChHHHHHHHH---HHhCCceEEEEEECCCCCCh-hhHhHhhCcCCCCCCCcEEEEecCChH
Q 046770 271 VTKSILRSVAMGIVD--HNDLNLLQWKLK---KQLFGKRFLLVLDDVWNENY-NDWIDLSRPFQDGAPGSKIIITTRNAD 344 (475)
Q Consensus 271 ~l~~il~~l~~~~~~--~~~~~~l~~~l~---~~l~~kr~LlVlDdv~~~~~-~~~~~l~~~l~~~~~gs~ilvTtR~~~ 344 (475)
-++.+++.++....+ .+-++-+.+... ....|+.-+||+-==...+. ..+.+. ..|.....-|.|++---.+.
T Consensus 434 tLrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~-vaLacDrRlCHvv~EVplES 512 (664)
T PTZ00494 434 TLRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEV-VSLVSDCQACHIVLAVPMKA 512 (664)
T ss_pred hHHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHH-HHHHccchhheeeeechHhh
Confidence 467788888765432 122233333222 23456666777642211111 112221 12223334567776544433
Q ss_pred HHHhc---CCCceeeCCCCCHHHHHHHHhhcc
Q 046770 345 AALIM---GTVQAYPLKGLSNDDCMCLFTQHS 373 (475)
Q Consensus 345 v~~~~---~~~~~~~l~~L~~~~~~~lf~~~~ 373 (475)
+.... .....|.+.+++.+++.++..+..
T Consensus 513 LT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 513 LTPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hchhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 22111 123568889999999998887653
No 195
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.84 E-value=0.0043 Score=59.53 Aligned_cols=134 Identities=21% Similarity=0.230 Sum_probs=72.4
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCc-ccccCcCeE-E---EEEecCCC-----
Q 046770 197 VYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDS-RVQCHFDLK-A---WTYVSQDF----- 266 (475)
Q Consensus 197 ~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~~~F~~~-~---wv~v~~~~----- 266 (475)
+-+|..+..--.++|.. +.+..|.+.|.+|.|||.||-...-.. -.+..|.-. + -+.+.++.
T Consensus 226 i~prn~eQ~~ALdlLld--------~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG 297 (436)
T COG1875 226 IRPRNAEQRVALDLLLD--------DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPG 297 (436)
T ss_pred cCcccHHHHHHHHHhcC--------CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCC
Confidence 44577777777888887 568899999999999999885542211 112223211 1 12222221
Q ss_pred C----HH---HHHHHHHHHhhcCCCCCCChHHHHHHHH---------HHhCCc---eEEEEEECCCCCChhhHhHhhCcC
Q 046770 267 D----II---RVTKSILRSVAMGIVDHNDLNLLQWKLK---------KQLFGK---RFLLVLDDVWNENYNDWIDLSRPF 327 (475)
Q Consensus 267 ~----~~---~~l~~il~~l~~~~~~~~~~~~l~~~l~---------~~l~~k---r~LlVlDdv~~~~~~~~~~l~~~l 327 (475)
. +. .-+.+-++.+...... ....+...+. .+..|+ .-+||+|.+.+....+...+ +
T Consensus 298 ~eEeKm~PWmq~i~DnLE~L~~~~~~--~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTi---l 372 (436)
T COG1875 298 TEEEKMGPWMQAIFDNLEVLFSPNEP--GDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTI---L 372 (436)
T ss_pred chhhhccchHHHHHhHHHHHhccccc--chHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHH---H
Confidence 0 00 1122223333322111 1112222211 123455 45999999988765544444 4
Q ss_pred CCCCCCcEEEEecCCh
Q 046770 328 QDGAPGSKIIITTRNA 343 (475)
Q Consensus 328 ~~~~~gs~ilvTtR~~ 343 (475)
...+.||||+.|.-..
T Consensus 373 tR~G~GsKIVl~gd~a 388 (436)
T COG1875 373 TRAGEGSKIVLTGDPA 388 (436)
T ss_pred HhccCCCEEEEcCCHH
Confidence 4567899999987543
No 196
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.019 Score=60.90 Aligned_cols=182 Identities=14% Similarity=0.071 Sum_probs=102.5
Q ss_pred cccccch---hHHHHHHHHhcCCC---CCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHH
Q 046770 196 KVYGRSK---EREEIVELLLKEDG---TSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDII 269 (475)
Q Consensus 196 ~~vGR~~---e~~~l~~~L~~~~~---~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 269 (475)
++.|-++ |++++++.|.+... -+. .-++=+.++|++|+|||-||++++.... +-|++++.
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGA--KiPkGvLL~GPPGTGKTLLAKAiAGEAg-------VPF~svSG----- 377 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGA--KIPKGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSVSG----- 377 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCC--cCcCceEEECCCCCcHHHHHHHHhcccC-------Cceeeech-----
Confidence 4667654 56666777766211 011 3346688999999999999999998543 33455554
Q ss_pred HHHHHHHHHhhcCCCCCCChHHHHHHHHH-HhCCceEEEEEECCCCC---------------ChhhHhHhhCcCCCC--C
Q 046770 270 RVTKSILRSVAMGIVDHNDLNLLQWKLKK-QLFGKRFLLVLDDVWNE---------------NYNDWIDLSRPFQDG--A 331 (475)
Q Consensus 270 ~~l~~il~~l~~~~~~~~~~~~l~~~l~~-~l~~kr~LlVlDdv~~~---------------~~~~~~~l~~~l~~~--~ 331 (475)
.+.++.+.... ...++.|-. .=...+++|.+|++... ....+.+++..+... .
T Consensus 378 ---SEFvE~~~g~~------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~ 448 (774)
T KOG0731|consen 378 ---SEFVEMFVGVG------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS 448 (774)
T ss_pred ---HHHHHHhcccc------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC
Confidence 23333332221 111222222 22345788888887321 112344555444322 2
Q ss_pred CCcEEEEecCChHHHHh--cC---CCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHH
Q 046770 332 PGSKIIITTRNADAALI--MG---TVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAK 404 (475)
Q Consensus 332 ~gs~ilvTtR~~~v~~~--~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 404 (475)
.+.-+|-+|+..++... +. -.+.+.++.-+.....++|..|+-.-.. ..+..++.+ |+...-|.+=|..
T Consensus 449 ~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~---~~e~~dl~~-~a~~t~gf~gadl 522 (774)
T KOG0731|consen 449 KGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL---DDEDVDLSK-LASLTPGFSGADL 522 (774)
T ss_pred CcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC---CcchhhHHH-HHhcCCCCcHHHH
Confidence 33345556666554321 22 2356778877888888999888744322 234455566 8888888876654
No 197
>PRK13695 putative NTPase; Provisional
Probab=96.83 E-value=0.00083 Score=59.37 Aligned_cols=22 Identities=36% Similarity=0.443 Sum_probs=19.5
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 046770 226 VVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.+.|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998774
No 198
>PRK06696 uridine kinase; Validated
Probab=96.81 E-value=0.0016 Score=60.06 Aligned_cols=43 Identities=28% Similarity=0.290 Sum_probs=34.0
Q ss_pred cchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 200 RSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 200 R~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
|.+-+++|.+.+..... ....+|+|.|.+|+||||||+.+...
T Consensus 3 ~~~~~~~la~~~~~~~~-----~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 3 RKQLIKELAEHILTLNL-----TRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred HHHHHHHHHHHHHHhCC-----CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 56667788887765221 45789999999999999999999874
No 199
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.80 E-value=0.0037 Score=60.37 Aligned_cols=83 Identities=19% Similarity=0.159 Sum_probs=54.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCC-----CCCCChHHHHHHHH
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGI-----VDHNDLNLLQWKLK 297 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~-----~~~~~~~~l~~~l~ 297 (475)
.-+++-|+|++|+||||||.+++... ...-..++|++..+.+++. .++.++... ....+.++....+.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~--~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEA--QKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 34788999999999999999987632 2233567899887777653 233332211 12334555666665
Q ss_pred HHhC-CceEEEEEECC
Q 046770 298 KQLF-GKRFLLVLDDV 312 (475)
Q Consensus 298 ~~l~-~kr~LlVlDdv 312 (475)
..+. +..-+||+|.+
T Consensus 127 ~li~s~~~~lIVIDSv 142 (325)
T cd00983 127 SLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHhccCCCEEEEcch
Confidence 5553 44569999997
No 200
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.75 E-value=0.019 Score=59.05 Aligned_cols=155 Identities=15% Similarity=0.073 Sum_probs=79.3
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFG 302 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 302 (475)
..+-|.++|++|+|||.+|+.+++.. ...| +-+..+. ++ ... .......+...+...-..
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~--~~~~---~~l~~~~------l~--------~~~-vGese~~l~~~f~~A~~~ 317 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDW--QLPL---LRLDVGK------LF--------GGI-VGESESRMRQMIRIAEAL 317 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh--CCCE---EEEEhHH------hc--------ccc-cChHHHHHHHHHHHHHhc
Confidence 34668899999999999999999843 2222 1111111 11 000 011112222223222235
Q ss_pred ceEEEEEECCCCCC--------hhh----HhHhhCcCCCCCCCcEEEEecCChHH-HHh-c---CCCceeeCCCCCHHHH
Q 046770 303 KRFLLVLDDVWNEN--------YND----WIDLSRPFQDGAPGSKIIITTRNADA-ALI-M---GTVQAYPLKGLSNDDC 365 (475)
Q Consensus 303 kr~LlVlDdv~~~~--------~~~----~~~l~~~l~~~~~gs~ilvTtR~~~v-~~~-~---~~~~~~~l~~L~~~~~ 365 (475)
.+++|+||+++... ... ...++..+.....+.-||.||...+. ... . .-...+.+..-+.++-
T Consensus 318 ~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR 397 (489)
T CHL00195 318 SPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEER 397 (489)
T ss_pred CCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHH
Confidence 68999999985310 000 11122222223344556677765432 111 1 1235677888888888
Q ss_pred HHHHhhcccCCCCC-CCCchHHHHHHHHHHhcCCchH
Q 046770 366 MCLFTQHSLETRDF-SMHQPLKEIGAKIVIKCNGLPL 401 (475)
Q Consensus 366 ~~lf~~~~~~~~~~-~~~~~~~~~~~~I~~~c~G~PL 401 (475)
.++|..+....... ....+ ...+++.+.|.--
T Consensus 398 ~~Il~~~l~~~~~~~~~~~d----l~~La~~T~GfSG 430 (489)
T CHL00195 398 EKIFKIHLQKFRPKSWKKYD----IKKLSKLSNKFSG 430 (489)
T ss_pred HHHHHHHHhhcCCCcccccC----HHHHHhhcCCCCH
Confidence 88888776442211 11222 3446667766643
No 201
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.75 E-value=0.01 Score=62.38 Aligned_cols=135 Identities=16% Similarity=0.078 Sum_probs=73.8
Q ss_pred cccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcc-cccCcCeEEEEEecCCCCHHHHH
Q 046770 194 EAKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSR-VQCHFDLKAWTYVSQDFDIIRVT 272 (475)
Q Consensus 194 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~~~F~~~~wv~v~~~~~~~~~l 272 (475)
...++|....+.++.+.+..... .-.-|.|+|..|+|||++|+.+.+... ... .-+.+++..... ..+
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~------~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~---pfv~i~c~~~~~--~~~ 263 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVAR------SNSTVLLRGESGTGKELIAKAIHYLSPRAKR---PFVKVNCAALSE--TLL 263 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhC------cCCCEEEECCCCccHHHHHHHHHHhCCCCCC---CeEEeecCCCCH--HHH
Confidence 45799999999999888765221 123567999999999999999987432 112 223444444322 222
Q ss_pred HHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCCC-----------CCcEEEEecC
Q 046770 273 KSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDGA-----------PGSKIIITTR 341 (475)
Q Consensus 273 ~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR 341 (475)
.. .+.+...+.-... .............-.|+||++..........+...+..+. ...+||.||.
T Consensus 264 ~~---~lfg~~~~~~~~~-~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~ 339 (534)
T TIGR01817 264 ES---ELFGHEKGAFTGA-IAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATN 339 (534)
T ss_pred HH---HHcCCCCCccCCC-CcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCC
Confidence 22 2222111100000 0000000001223468899998777666666766654321 1358888876
Q ss_pred Ch
Q 046770 342 NA 343 (475)
Q Consensus 342 ~~ 343 (475)
..
T Consensus 340 ~~ 341 (534)
T TIGR01817 340 RD 341 (534)
T ss_pred CC
Confidence 53
No 202
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.74 E-value=0.011 Score=52.45 Aligned_cols=23 Identities=39% Similarity=0.673 Sum_probs=20.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.+++|+|+.|.|||||++.+...
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 47999999999999999999874
No 203
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.70 E-value=0.0035 Score=59.02 Aligned_cols=87 Identities=24% Similarity=0.236 Sum_probs=52.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCccccc----CcCeEEEEEecCCCCHHHHHHHHHHHhhcCC---------CCCCChHH
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQC----HFDLKAWTYVSQDFDIIRVTKSILRSVAMGI---------VDHNDLNL 291 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~---------~~~~~~~~ 291 (475)
.+.=|+|++|+|||.|+.+++-+..... .=..++|++....|++.++. +|++...... ....+.++
T Consensus 39 ~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~~ 117 (256)
T PF08423_consen 39 SITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLEE 117 (256)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHHH
T ss_pred cEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHHH
Confidence 5788999999999999988764322221 12368999999999887764 4555433211 01223333
Q ss_pred HHHH---HHHHh-CCceEEEEEECC
Q 046770 292 LQWK---LKKQL-FGKRFLLVLDDV 312 (475)
Q Consensus 292 l~~~---l~~~l-~~kr~LlVlDdv 312 (475)
+... +...+ +.+--|||+|.+
T Consensus 118 l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 118 LLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHhhccccceEEEEecch
Confidence 3333 33333 344459999998
No 204
>PRK09354 recA recombinase A; Provisional
Probab=96.70 E-value=0.0056 Score=59.66 Aligned_cols=84 Identities=21% Similarity=0.159 Sum_probs=55.4
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCC-----CCCCChHHHHHHHH
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGI-----VDHNDLNLLQWKLK 297 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~-----~~~~~~~~l~~~l~ 297 (475)
.-+++-|+|++|+||||||.+++... ...-..++|++....++.. .++.++... ......++....+.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~--~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 34789999999999999999987643 2233567899888877753 233333221 12334555556666
Q ss_pred HHhC-CceEEEEEECCC
Q 046770 298 KQLF-GKRFLLVLDDVW 313 (475)
Q Consensus 298 ~~l~-~kr~LlVlDdv~ 313 (475)
..+. +..-+||+|-+-
T Consensus 132 ~li~s~~~~lIVIDSva 148 (349)
T PRK09354 132 TLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHhhcCCCCEEEEeChh
Confidence 5553 446699999983
No 205
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.69 E-value=0.011 Score=61.22 Aligned_cols=59 Identities=20% Similarity=0.327 Sum_probs=42.5
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEE
Q 046770 196 KVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTY 261 (475)
Q Consensus 196 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 261 (475)
++.--.+-++++..||.. .-... ...+++.++|++|+||||.++.++++ ..|+..-|.+
T Consensus 20 eLavhkkKv~eV~~wl~~-~~~~~--~~~~iLlLtGP~G~GKtttv~~La~e----lg~~v~Ew~n 78 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEE-MFSGS--SPKRILLLTGPSGCGKTTTVKVLAKE----LGFEVQEWIN 78 (519)
T ss_pred HhhccHHHHHHHHHHHHH-HhccC--CCcceEEEECCCCCCHHHHHHHHHHH----hCCeeEEecC
Confidence 455456678889999875 22111 34579999999999999999999984 2466666764
No 206
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.68 E-value=0.0092 Score=51.52 Aligned_cols=40 Identities=20% Similarity=0.279 Sum_probs=29.1
Q ss_pred EEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCC
Q 046770 226 VVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFD 267 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~ 267 (475)
++.|+|++|+||||++..+.... ...-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI--ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH--HhcCCEEEEEECCcchH
Confidence 36799999999999999998743 22334677777766544
No 207
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.68 E-value=0.018 Score=51.17 Aligned_cols=119 Identities=15% Similarity=0.141 Sum_probs=62.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEec--CCCCHHHH------HHHHHHHhhcCC-----CCCCC-hH
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVS--QDFDIIRV------TKSILRSVAMGI-----VDHND-LN 290 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~--~~~~~~~~------l~~il~~l~~~~-----~~~~~-~~ 290 (475)
.+++|+|+.|.|||||.+.++... ......+++.-. ...+.... +.++++.++... ...-+ -.
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~ 102 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGE 102 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHH
Confidence 489999999999999999998742 123334433211 11122221 111344333221 11111 12
Q ss_pred HHHHHHHHHhCCceEEEEEECCCC-CChhhHhHhhCcCCCC-CC-CcEEEEecCChHHH
Q 046770 291 LLQWKLKKQLFGKRFLLVLDDVWN-ENYNDWIDLSRPFQDG-AP-GSKIIITTRNADAA 346 (475)
Q Consensus 291 ~l~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~-gs~ilvTtR~~~v~ 346 (475)
...-.+.+.+-..+-++++|+.-. .+......+...+... .. +..||++|......
T Consensus 103 ~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 103 RQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 222235566667788999999742 2333333444433321 12 66888888876544
No 208
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.65 E-value=0.0056 Score=57.55 Aligned_cols=85 Identities=16% Similarity=0.239 Sum_probs=51.9
Q ss_pred EEEEEccCCCcHHHHHHHHHcCcccccCc-CeEEEEEecCCCC-HHHHHHHHHHHhhcCC-------CCCCChH-----H
Q 046770 226 VVSIIGMGGLGKTTLAQLVYNDSRVQCHF-DLKAWTYVSQDFD-IIRVTKSILRSVAMGI-------VDHNDLN-----L 291 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~v~~~~~-~~~~l~~il~~l~~~~-------~~~~~~~-----~ 291 (475)
-++|.|..|+|||||++.+++. ...+| +.++++.+.+... +.+++..+...-.... .+..... .
T Consensus 71 r~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~~ 148 (274)
T cd01133 71 KIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVAL 148 (274)
T ss_pred EEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 5789999999999999999984 33344 4566777776553 4555555544211110 0111111 1
Q ss_pred HHHHHHHHh--C-CceEEEEEECC
Q 046770 292 LQWKLKKQL--F-GKRFLLVLDDV 312 (475)
Q Consensus 292 l~~~l~~~l--~-~kr~LlVlDdv 312 (475)
..-.+.+++ + ++.+||++||+
T Consensus 149 ~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 149 TGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHhcCCeEEEEEeCh
Confidence 112244444 3 89999999998
No 209
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.64 E-value=0.0097 Score=58.23 Aligned_cols=127 Identities=18% Similarity=0.069 Sum_probs=67.0
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcc-cccCcCeEEEEEecCCCCHHHHHHHH
Q 046770 197 VYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSR-VQCHFDLKAWTYVSQDFDIIRVTKSI 275 (475)
Q Consensus 197 ~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~~~F~~~~wv~v~~~~~~~~~l~~i 275 (475)
++|....+.++.+.+..... .-.-|.|+|..|+||+++|+.+.+... ....| +-|++.... ...+...
T Consensus 1 liG~S~~m~~~~~~~~~~a~------~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pf---v~vnc~~~~--~~~l~~~ 69 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP------LDRPVLIIGERGTGKELIAARLHYLSKRWQGPL---VKLNCAALS--ENLLDSE 69 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC------CCCCEEEECCCCChHHHHHHHHHHhcCccCCCe---EEEeCCCCC--hHHHHHH
Confidence 46777777777776655221 123578999999999999999986432 12222 334444322 1222221
Q ss_pred HHHhhcCCC----CCCChHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCCC-----------CCcEEEEec
Q 046770 276 LRSVAMGIV----DHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDGA-----------PGSKIIITT 340 (475)
Q Consensus 276 l~~l~~~~~----~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTt 340 (475)
+.+... +... .....+. ....-.|+||++..........+...+..+. ...+||.||
T Consensus 70 ---lfG~~~g~~~ga~~--~~~G~~~---~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at 141 (329)
T TIGR02974 70 ---LFGHEAGAFTGAQK--RHQGRFE---RADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCAT 141 (329)
T ss_pred ---HhccccccccCccc--ccCCchh---hCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEec
Confidence 211110 1100 0000011 1223468999998776656666655553221 345888888
Q ss_pred CC
Q 046770 341 RN 342 (475)
Q Consensus 341 R~ 342 (475)
..
T Consensus 142 ~~ 143 (329)
T TIGR02974 142 NA 143 (329)
T ss_pred hh
Confidence 64
No 210
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.63 E-value=0.0063 Score=60.56 Aligned_cols=24 Identities=33% Similarity=0.307 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..++.++|++|+||||++..++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998863
No 211
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.63 E-value=0.008 Score=54.10 Aligned_cols=88 Identities=16% Similarity=0.129 Sum_probs=47.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecC-CCCHHHHHHHHHHHhhcCCC---CCCChHH-HHHHHHHH
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQ-DFDIIRVTKSILRSVAMGIV---DHNDLNL-LQWKLKKQ 299 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~-~~~~~~~l~~il~~l~~~~~---~~~~~~~-l~~~l~~~ 299 (475)
+++.++|+.|+||||.+-.++.....+ -..+..++... .....+-++...+.++.... ...+... +.+.+...
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~ 79 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKF 79 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHH
Confidence 689999999999998877776543322 23355555432 23455666666777665421 2222222 22333333
Q ss_pred hCCceEEEEEECCCC
Q 046770 300 LFGKRFLLVLDDVWN 314 (475)
Q Consensus 300 l~~kr~LlVlDdv~~ 314 (475)
-..+.=+|++|-...
T Consensus 80 ~~~~~D~vlIDT~Gr 94 (196)
T PF00448_consen 80 RKKGYDLVLIDTAGR 94 (196)
T ss_dssp HHTTSSEEEEEE-SS
T ss_pred hhcCCCEEEEecCCc
Confidence 222223677777643
No 212
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.63 E-value=0.0031 Score=61.27 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=23.6
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..+..++|+|++|.|||.+|+.+++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999995
No 213
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.62 E-value=0.0068 Score=58.55 Aligned_cols=84 Identities=20% Similarity=0.164 Sum_probs=54.2
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCC-----CCCCChHHHHHHHH
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGI-----VDHNDLNLLQWKLK 297 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~-----~~~~~~~~l~~~l~ 297 (475)
.-+++-|+|++|+||||||.+++... ...-..++|++..+.++.. .++.++... ......++....+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~--~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 34799999999999999999887643 2223457788877766653 233333221 12344555556665
Q ss_pred HHhC-CceEEEEEECCC
Q 046770 298 KQLF-GKRFLLVLDDVW 313 (475)
Q Consensus 298 ~~l~-~kr~LlVlDdv~ 313 (475)
..++ +..-+||+|.+-
T Consensus 127 ~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHhhccCCcEEEEcchh
Confidence 5553 456699999983
No 214
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.60 E-value=0.021 Score=50.01 Aligned_cols=116 Identities=12% Similarity=0.026 Sum_probs=57.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccc-cC--cC---eEEEEEecCCCC--HHHHHHHHHHHhhcCCCCCCChHHHHHHH
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQ-CH--FD---LKAWTYVSQDFD--IIRVTKSILRSVAMGIVDHNDLNLLQWKL 296 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~--F~---~~~wv~v~~~~~--~~~~l~~il~~l~~~~~~~~~~~~l~~~l 296 (475)
.+++|+|+.|.|||||++.+....... +. ++ ...++ .+... ...+...+.-. ....-..-....-.+
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~l 102 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLAF 102 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccccccHHHHhhcc---CCCCCCHHHHHHHHH
Confidence 489999999999999999998743211 11 11 12222 22221 11222222110 111111112223345
Q ss_pred HHHhCCceEEEEEECCCCC-ChhhHhHhhCcCCCCCCCcEEEEecCChHHHH
Q 046770 297 KKQLFGKRFLLVLDDVWNE-NYNDWIDLSRPFQDGAPGSKIIITTRNADAAL 347 (475)
Q Consensus 297 ~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 347 (475)
.+.+-.++=++++|+--.. +......+...+... +..||++|.+.....
T Consensus 103 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 5566667788899987321 222333333333222 356788887766544
No 215
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.59 E-value=0.018 Score=49.10 Aligned_cols=103 Identities=17% Similarity=0.170 Sum_probs=55.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCce
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKR 304 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr 304 (475)
.+++|+|+.|.|||||++.+..... .....+|+.-.. .+..- ..-..-....-.|.+.+-.++
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~-------------~i~~~-~~lS~G~~~rv~laral~~~p 89 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTV-------------KIGYF-EQLSGGEKMRLALAKLLLENP 89 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeE-------------EEEEE-ccCCHHHHHHHHHHHHHhcCC
Confidence 4899999999999999999987432 123333331100 00000 001111122223455566677
Q ss_pred EEEEEECCCC-CChhhHhHhhCcCCCCCCCcEEEEecCChHHH
Q 046770 305 FLLVLDDVWN-ENYNDWIDLSRPFQDGAPGSKIIITTRNADAA 346 (475)
Q Consensus 305 ~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~ 346 (475)
-++++|+.-. .+......+...+... +..||++|...+..
T Consensus 90 ~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~ 130 (144)
T cd03221 90 NLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFL 130 (144)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHH
Confidence 8999999743 2333333443333322 24678888775544
No 216
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.57 E-value=0.048 Score=46.35 Aligned_cols=81 Identities=14% Similarity=0.163 Sum_probs=55.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHhhhhhh
Q 046770 16 KETMSKIVSVSIEMLLEKLASEAVVLFARRERIHDYLVQWKKTLEKIKAVIEDAEEKQT-REESVKMWLYELQNLAYDVE 94 (475)
Q Consensus 16 ~~m~~~~~s~~~~~l~~~l~~~~~~~~~~~~~v~~~~~~l~~~l~~~~~~l~~a~~~~~-~~~~v~~Wl~~lrd~ayd~e 94 (475)
..++|++++++++.++..+... .......+.-+++|..+++.|..++.+.+.-.. .|..-+.=++++.+...+++
T Consensus 4 eL~~gaalG~~~~eLlk~v~~~----~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~ 79 (147)
T PF05659_consen 4 ELVGGAALGAVFGELLKAVIDA----SKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGK 79 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHH
Confidence 3456666666666666655543 333344567889999999999999998876432 22222455788888888888
Q ss_pred hhhhhH
Q 046770 95 DLLGEF 100 (475)
Q Consensus 95 D~lD~~ 100 (475)
++++.|
T Consensus 80 ~LV~k~ 85 (147)
T PF05659_consen 80 ELVEKC 85 (147)
T ss_pred HHHHHh
Confidence 888877
No 217
>PRK08233 hypothetical protein; Provisional
Probab=96.56 E-value=0.0085 Score=53.13 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=21.7
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..+|+|.|.+|+||||||..+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 368999999999999999999874
No 218
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.55 E-value=0.0068 Score=58.70 Aligned_cols=88 Identities=16% Similarity=0.111 Sum_probs=54.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcCcccc----cCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCC---------CCCChH
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYNDSRVQ----CHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIV---------DHNDLN 290 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~---------~~~~~~ 290 (475)
-+++-|+|++|+|||+|+.+++-..... ..=..++|++....|++.++.. +.+.++.... ...+.+
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~~~~~~~~e 174 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNILYARAYTSE 174 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEEEecCCCHH
Confidence 3788999999999999998876422211 1123689999999898887653 4555443211 112233
Q ss_pred HHH---HHHHHHh-CCceEEEEEECC
Q 046770 291 LLQ---WKLKKQL-FGKRFLLVLDDV 312 (475)
Q Consensus 291 ~l~---~~l~~~l-~~kr~LlVlDdv 312 (475)
... ..+...+ .++--|||+|.+
T Consensus 175 ~~~~~l~~l~~~i~~~~~~LvVIDSi 200 (313)
T TIGR02238 175 HQMELLDYLAAKFSEEPFRLLIVDSI 200 (313)
T ss_pred HHHHHHHHHHHHhhccCCCEEEEEcc
Confidence 333 2333333 334458999998
No 219
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.55 E-value=0.0092 Score=54.82 Aligned_cols=74 Identities=16% Similarity=0.017 Sum_probs=40.4
Q ss_pred EEEEEccCCCcHHHHHHHHHcCcccc-cCcCeEEEEEecCCCCHHHHHHHHHHHhh-cCCCCCCChHHHHHHHHHHhC
Q 046770 226 VVSIIGMGGLGKTTLAQLVYNDSRVQ-CHFDLKAWTYVSQDFDIIRVTKSILRSVA-MGIVDHNDLNLLQWKLKKQLF 301 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv~v~~~~~~~~~l~~il~~l~-~~~~~~~~~~~l~~~l~~~l~ 301 (475)
+|+|.|.+|+||||||+.+....... .. ..+..++...-+.....+...- .+. ...+...+.+.+...|.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~-~~v~vi~~D~f~~~~~~~~~~~-~~~~~g~p~~~d~~~l~~~L~~l~~ 76 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDH-PNVELITTDGFLYPNKELIERG-LMDRKGFPESYDMEALLKFLKDIKS 76 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCC-CcEEEEecCcccCcHHHHHHhh-hhhcCCCcccCCHHHHHHHHHHHHC
Confidence 58999999999999999998732110 11 1233444444333332222211 111 122355566667666666655
No 220
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.53 E-value=0.0069 Score=59.21 Aligned_cols=88 Identities=18% Similarity=0.104 Sum_probs=54.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcCccc----ccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCC---------CCCChH
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYNDSRV----QCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIV---------DHNDLN 290 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~~~~----~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~---------~~~~~~ 290 (475)
-++.-|+|++|+|||+|+.+++-.... ...-..++|++....|.+.++.. +.+.++.... ...+.+
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~~e 204 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYTYE 204 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCCHH
Confidence 368889999999999999988642222 11124689999999999887654 4555543321 223334
Q ss_pred HHHHH---HHHHh-CCceEEEEEECC
Q 046770 291 LLQWK---LKKQL-FGKRFLLVLDDV 312 (475)
Q Consensus 291 ~l~~~---l~~~l-~~kr~LlVlDdv 312 (475)
.+... +...+ ..+--|||+|.+
T Consensus 205 ~~~~~l~~l~~~i~~~~~~LvVIDSi 230 (344)
T PLN03187 205 HQYNLLLGLAAKMAEEPFRLLIVDSV 230 (344)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 33322 32233 234458899998
No 221
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.53 E-value=0.018 Score=56.67 Aligned_cols=102 Identities=15% Similarity=0.093 Sum_probs=56.7
Q ss_pred cEEEEEEccCCCcHH-HHHHHHHcCcccccCcCeEEEEEecCC-CCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhC
Q 046770 224 FSVVSIIGMGGLGKT-TLAQLVYNDSRVQCHFDLKAWTYVSQD-FDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLF 301 (475)
Q Consensus 224 ~~vv~I~G~gGiGKT-tLA~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 301 (475)
-+++.++|+.|+||| |||+..+......+ -..+..|+...- -...+-++...+-++.......+..++...+... +
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~-~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l-~ 280 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKK-KKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL-R 280 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhcc-CcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-h
Confidence 589999999999998 67776665331122 233555554331 2344555555555655554555666665555443 2
Q ss_pred CceEEEEEECCCCCC--hhhHhHhhCcCC
Q 046770 302 GKRFLLVLDDVWNEN--YNDWIDLSRPFQ 328 (475)
Q Consensus 302 ~kr~LlVlDdv~~~~--~~~~~~l~~~l~ 328 (475)
.. =+|.+|-+.... .....++...+.
T Consensus 281 ~~-d~ILVDTaGrs~~D~~~i~el~~~~~ 308 (407)
T COG1419 281 DC-DVILVDTAGRSQYDKEKIEELKELID 308 (407)
T ss_pred cC-CEEEEeCCCCCccCHHHHHHHHHHHh
Confidence 22 356667775442 223344444443
No 222
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.51 E-value=0.0092 Score=51.41 Aligned_cols=116 Identities=15% Similarity=0.108 Sum_probs=58.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecC---CCCHHHHHHHHHHHhh-----cCC-CCCCCh------
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQ---DFDIIRVTKSILRSVA-----MGI-VDHNDL------ 289 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~---~~~~~~~l~~il~~l~-----~~~-~~~~~~------ 289 (475)
..|-|++..|.||||+|....-. ...+=..+.++..-. ......++..+ ..+. ... ....+.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~r--a~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALR--ALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 36788888899999999766541 111111223332222 23333333333 0000 000 000111
Q ss_pred -HHHHHHHHHHhCCce-EEEEEECCCCC---ChhhHhHhhCcCCCCCCCcEEEEecCCh
Q 046770 290 -NLLQWKLKKQLFGKR-FLLVLDDVWNE---NYNDWIDLSRPFQDGAPGSKIIITTRNA 343 (475)
Q Consensus 290 -~~l~~~l~~~l~~kr-~LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 343 (475)
....+..++.+.... =|+|||++-.. .....+.+...+.....+.-+|+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 112233444444444 49999998321 2233445555555555678999999984
No 223
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.0097 Score=60.78 Aligned_cols=99 Identities=19% Similarity=0.222 Sum_probs=59.4
Q ss_pred ccccccchhHHHHHHHHhcCCCC----CCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGT----SHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIR 270 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~----~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 270 (475)
.++=|-++.+.+|.+++.....+ .-.-...+-|.++|++|.|||.||+.++++..+ . ++.++.
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v--P-----f~~isA------ 256 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV--P-----FLSISA------ 256 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC--c-----eEeecc------
Confidence 35667888888877766441110 001134567889999999999999999995322 2 233333
Q ss_pred HHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCC
Q 046770 271 VTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVW 313 (475)
Q Consensus 271 ~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~ 313 (475)
.+|+..+. ....+.+.+...+.-..-+++++||++.
T Consensus 257 --peivSGvS-----GESEkkiRelF~~A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 257 --PEIVSGVS-----GESEKKIRELFDQAKSNAPCIVFIDEID 292 (802)
T ss_pred --hhhhcccC-----cccHHHHHHHHHHHhccCCeEEEeeccc
Confidence 22222222 2233334444444456679999999994
No 224
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.51 E-value=0.011 Score=64.10 Aligned_cols=133 Identities=17% Similarity=0.100 Sum_probs=73.1
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKS 274 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~ 274 (475)
..++|+...+..+.+.+..... .-.-|.|+|..|+|||++|+.+++..... -...+.+++.... ...+..
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~------~~~pVLI~GE~GTGK~~lA~~ih~~s~r~--~~~~v~i~c~~~~--~~~~~~ 445 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ------SDSTVLILGETGTGKELIARAIHNLSGRN--NRRMVKMNCAAMP--AGLLES 445 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC------CCCCEEEECCCCcCHHHHHHHHHHhcCCC--CCCeEEEecccCC--hhHhhh
Confidence 3689999888888776654221 12357899999999999999998743211 1223444444422 122222
Q ss_pred HHHHhhcCCCCC--CChHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCC-----------CCCcEEEEecC
Q 046770 275 ILRSVAMGIVDH--NDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDG-----------APGSKIIITTR 341 (475)
Q Consensus 275 il~~l~~~~~~~--~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilvTtR 341 (475)
.+.+...+. .........+. ....=.|+|||+..........+...+..+ ..+.+||.||.
T Consensus 446 ---~lfg~~~~~~~g~~~~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~ 519 (686)
T PRK15429 446 ---DLFGHERGAFTGASAQRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATN 519 (686)
T ss_pred ---hhcCcccccccccccchhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCC
Confidence 111211110 00000111121 122347999999877766666666555322 13458888887
Q ss_pred Ch
Q 046770 342 NA 343 (475)
Q Consensus 342 ~~ 343 (475)
..
T Consensus 520 ~~ 521 (686)
T PRK15429 520 RD 521 (686)
T ss_pred CC
Confidence 54
No 225
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.50 E-value=0.0077 Score=58.92 Aligned_cols=132 Identities=15% Similarity=0.013 Sum_probs=71.1
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHH
Q 046770 196 KVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSI 275 (475)
Q Consensus 196 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~i 275 (475)
.++|+...+.++.+.+..... .-.-|.|+|..|+||+++|+.+....... -..-+.+++.... . ..+...
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~------~~~pVlI~GE~GtGK~~lA~~iH~~s~r~--~~pfv~v~c~~~~-~-~~~~~~ 76 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAP------LDKPVLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAALN-E-NLLDSE 76 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhC------CCCCEEEECCCCCcHHHHHHHHHHhCCcc--CCCeEEEeCCCCC-H-HHHHHH
Confidence 588999888888888765321 12357899999999999999998632111 1122344554422 2 222221
Q ss_pred HHHhhcCCCCC--CChHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCCC-----------CCcEEEEecCC
Q 046770 276 LRSVAMGIVDH--NDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDGA-----------PGSKIIITTRN 342 (475)
Q Consensus 276 l~~l~~~~~~~--~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~ 342 (475)
+.+..... .........+. ....=.|+|||+..........+...+..+. ...+||.||..
T Consensus 77 ---lfg~~~~~~~g~~~~~~g~l~---~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~ 150 (326)
T PRK11608 77 ---LFGHEAGAFTGAQKRHPGRFE---RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (326)
T ss_pred ---HccccccccCCcccccCCchh---ccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCch
Confidence 21111000 00000001111 1222358899998777666666665553221 23688888765
Q ss_pred h
Q 046770 343 A 343 (475)
Q Consensus 343 ~ 343 (475)
.
T Consensus 151 ~ 151 (326)
T PRK11608 151 D 151 (326)
T ss_pred h
Confidence 3
No 226
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.49 E-value=0.013 Score=56.80 Aligned_cols=89 Identities=15% Similarity=0.090 Sum_probs=52.4
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcCcccc---c-CcCeEEEEEecCCCCHHHHHHHHHHHhhcCCC---------CCCCh
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYNDSRVQ---C-HFDLKAWTYVSQDFDIIRVTKSILRSVAMGIV---------DHNDL 289 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---~-~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~---------~~~~~ 289 (475)
.-.++.|+|.+|+|||+|+..++...... . .-..++|++....+...++ .++.+.++.... ...+.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~~~~~l~~i~~~~~~~~ 173 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLNPEDVLDNVAYARAYNT 173 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCChHHhhccEEEEecCCh
Confidence 34789999999999999999887532211 1 1135689998888887763 334444332210 11223
Q ss_pred HHHHH---HHHHHhC-CceEEEEEECC
Q 046770 290 NLLQW---KLKKQLF-GKRFLLVLDDV 312 (475)
Q Consensus 290 ~~l~~---~l~~~l~-~kr~LlVlDdv 312 (475)
+.+.. .+...+. .+--|||+|.+
T Consensus 174 ~~~~~~l~~~~~~~~~~~~~LvVIDSI 200 (316)
T TIGR02239 174 DHQLQLLQQAAAMMSESRFALLIVDSA 200 (316)
T ss_pred HHHHHHHHHHHHhhccCCccEEEEECc
Confidence 33322 2333333 34558899987
No 227
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.48 E-value=0.011 Score=54.83 Aligned_cols=86 Identities=17% Similarity=0.125 Sum_probs=52.8
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCC-------------------
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGI------------------- 283 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~------------------- 283 (475)
.-+++.|+|.+|+|||+|+.++.... .+ .=..++|++..+. +.++++.+ .+++...
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~-~~-~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGA-LK-QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH-Hh-CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccccc
Confidence 44789999999999999999986532 11 2346788887654 34444443 2222110
Q ss_pred -CCCCChHHHHHHHHHHhCC-ceEEEEEECCC
Q 046770 284 -VDHNDLNLLQWKLKKQLFG-KRFLLVLDDVW 313 (475)
Q Consensus 284 -~~~~~~~~l~~~l~~~l~~-kr~LlVlDdv~ 313 (475)
....+.+.+...+.+.+.. +.-++|+|.+-
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112335566666666653 55589999974
No 228
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.48 E-value=0.0089 Score=53.78 Aligned_cols=81 Identities=21% Similarity=0.183 Sum_probs=45.0
Q ss_pred EEEEEccCCCcHHHHHHHHHcCcccccCcC---eEEEEEecCCCCHHHHHHHHHHHhh----cCCCCCCChHHHHHHHHH
Q 046770 226 VVSIIGMGGLGKTTLAQLVYNDSRVQCHFD---LKAWTYVSQDFDIIRVTKSILRSVA----MGIVDHNDLNLLQWKLKK 298 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~---~~~wv~v~~~~~~~~~l~~il~~l~----~~~~~~~~~~~l~~~l~~ 298 (475)
||+|.|++|+||||+|+.+...... .... .....+............. -.... ...+...+.+.+...|..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~-~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~~ 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK-RGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLKA 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT-CTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc-cCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHHH
Confidence 6899999999999999999873321 1122 1333333332222222211 11111 111245667778888888
Q ss_pred HhCCceEEEE
Q 046770 299 QLFGKRFLLV 308 (475)
Q Consensus 299 ~l~~kr~LlV 308 (475)
..+++..-+-
T Consensus 79 L~~g~~i~~p 88 (194)
T PF00485_consen 79 LKNGGSIEIP 88 (194)
T ss_dssp HHTTSCEEEE
T ss_pred HhCCCccccc
Confidence 7777765443
No 229
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.47 E-value=0.016 Score=53.65 Aligned_cols=119 Identities=18% Similarity=0.239 Sum_probs=66.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcc-----cc---c---Cc---CeEEEEEecCCC------CH----------------
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSR-----VQ---C---HF---DLKAWTYVSQDF------DI---------------- 268 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~-----~~---~---~F---~~~~wv~v~~~~------~~---------------- 268 (475)
.+++|+|+.|.|||||.+.+..-.+ +. . .+ ..+.||.-...+ ++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 5899999999999999999976211 00 0 01 234555321111 11
Q ss_pred ------HHHHHHHHHHhhcCC-----CCCCChHHHH-HHHHHHhCCceEEEEEECCCC----CChhhHhHhhCcCCCCCC
Q 046770 269 ------IRVTKSILRSVAMGI-----VDHNDLNLLQ-WKLKKQLFGKRFLLVLDDVWN----ENYNDWIDLSRPFQDGAP 332 (475)
Q Consensus 269 ------~~~l~~il~~l~~~~-----~~~~~~~~l~-~~l~~~l~~kr~LlVlDdv~~----~~~~~~~~l~~~l~~~~~ 332 (475)
.+...+.|+.++... -..-+-.+.+ -.|.+.|..++=|++||+--. ......-+++..+...
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-- 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-- 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--
Confidence 133344444443321 1122222333 346778888999999998532 2223333444444433
Q ss_pred CcEEEEecCChHH
Q 046770 333 GSKIIITTRNADA 345 (475)
Q Consensus 333 gs~ilvTtR~~~v 345 (475)
|+.||++|.+-..
T Consensus 189 g~tIl~vtHDL~~ 201 (254)
T COG1121 189 GKTVLMVTHDLGL 201 (254)
T ss_pred CCEEEEEeCCcHH
Confidence 8899999998543
No 230
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.47 E-value=0.011 Score=57.59 Aligned_cols=88 Identities=15% Similarity=0.161 Sum_probs=53.9
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcCcccccC----cCeEEEEEecCCCCHHHHHHHHHHHhhcCCC---------CCCC--
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYNDSRVQCH----FDLKAWTYVSQDFDIIRVTKSILRSVAMGIV---------DHND-- 288 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~---------~~~~-- 288 (475)
-.++-|+|++|+|||+|+.+++........ =..++|++....|++.++.. +++.++.... ...+
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~~~~~~l~~i~~~~~~~~~ 180 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGLDPDEVLDNIHVARAYNSD 180 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCCChHhhhccEEEEeCCCHH
Confidence 478899999999999999998754322111 14789999999888776643 3343332110 0111
Q ss_pred -hHHHHHHHHHHhCC--ceEEEEEECC
Q 046770 289 -LNLLQWKLKKQLFG--KRFLLVLDDV 312 (475)
Q Consensus 289 -~~~l~~~l~~~l~~--kr~LlVlDdv 312 (475)
...+...+...+.. +--|||+|-+
T Consensus 181 ~~~~~~~~l~~~i~~~~~~~lvVIDSi 207 (317)
T PRK04301 181 HQMLLAEKAEELIKEGENIKLVIVDSL 207 (317)
T ss_pred HHHHHHHHHHHHHhccCceeEEEEECc
Confidence 12234445555543 3348999987
No 231
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.46 E-value=0.0021 Score=65.90 Aligned_cols=49 Identities=22% Similarity=0.352 Sum_probs=38.7
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHc
Q 046770 196 KVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 196 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
+++|-++.+++|++.|.....+.. ..-+++.++||+|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~--~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLE--EKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcC--CCCceEEEecCCCCCchHHHHHHHH
Confidence 589999999999998833111111 3447999999999999999999876
No 232
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.44 E-value=0.0037 Score=56.45 Aligned_cols=111 Identities=14% Similarity=0.118 Sum_probs=58.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHH-HHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDII-RVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGK 303 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~-~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 303 (475)
.++.|+|+.|+||||++..+.... .......++. +.++.... .-...++.+- ....+.......++..+...
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~--~~~~~~~i~t-~e~~~E~~~~~~~~~i~q~----~vg~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI--NKNKTHHILT-IEDPIEFVHESKRSLINQR----EVGLDTLSFENALKAALRQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh--hhcCCcEEEE-EcCCccccccCccceeeec----ccCCCccCHHHHHHHHhcCC
Confidence 378999999999999999877632 2222333332 12211100 0000111110 00112233455677777666
Q ss_pred eEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCChHHHH
Q 046770 304 RFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNADAAL 347 (475)
Q Consensus 304 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 347 (475)
+=+|++|++.+. +......... ..|..++.|+...++..
T Consensus 75 pd~ii~gEird~--e~~~~~l~~a---~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 75 PDVILVGEMRDL--ETIRLALTAA---ETGHLVMSTLHTNSAAK 113 (198)
T ss_pred cCEEEEcCCCCH--HHHHHHHHHH---HcCCEEEEEecCCcHHH
Confidence 779999999543 3333333222 23556888887765544
No 233
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.41 E-value=0.02 Score=53.41 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=18.7
Q ss_pred EEEEEccCCCcHHHHHHHHHc
Q 046770 226 VVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~ 246 (475)
+..|+|++|+|||+||..++-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 567999999999999998875
No 234
>PRK05439 pantothenate kinase; Provisional
Probab=96.41 E-value=0.019 Score=55.19 Aligned_cols=80 Identities=18% Similarity=0.078 Sum_probs=46.1
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHcCcccccC--cCeEEEEEecCCCCHHHHHHHHHHHh-hcCCCCCCChHHHHHHHHH
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCH--FDLKAWTYVSQDFDIIRVTKSILRSV-AMGIVDHNDLNLLQWKLKK 298 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~--F~~~~wv~v~~~~~~~~~l~~il~~l-~~~~~~~~~~~~l~~~l~~ 298 (475)
...-+|+|.|.+|+||||+|+.+..- .... -..+.-++...-+.....+..- ..+ ....+..-+.+.+...|..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~--l~~~~~~~~v~vi~~DdFy~~~~~l~~~-~l~~~kg~Pes~D~~~l~~~L~~ 160 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQAL--LSRWPEHPKVELVTTDGFLYPNAVLEER-GLMKRKGFPESYDMRALLRFLSD 160 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH--HHhhCCCCceEEEeccccccCHHHHhhh-hccccCCCcccccHHHHHHHHHH
Confidence 55689999999999999999988762 2211 1123334444433333322211 011 1122455667777777777
Q ss_pred HhCCce
Q 046770 299 QLFGKR 304 (475)
Q Consensus 299 ~l~~kr 304 (475)
...|+.
T Consensus 161 Lk~G~~ 166 (311)
T PRK05439 161 VKSGKP 166 (311)
T ss_pred HHcCCC
Confidence 777765
No 235
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.031 Score=57.80 Aligned_cols=135 Identities=13% Similarity=0.082 Sum_probs=70.8
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhC
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLF 301 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 301 (475)
...+-|.++|++|.|||++|+.+++. ....| +++..+ +++.... ......+.+..++.=+
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne--~~~nF-----lsvkgp--------EL~sk~v-----GeSEr~ir~iF~kAR~ 525 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANE--AGMNF-----LSVKGP--------ELFSKYV-----GESERAIREVFRKARQ 525 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhh--hcCCe-----eeccCH--------HHHHHhc-----CchHHHHHHHHHHHhh
Confidence 34577899999999999999999994 33334 233221 1111111 1122222223333333
Q ss_pred CceEEEEEECCCCCC-----------hhhHhHhhCcCCCCC--CCcEEEEecCChHHHH--hcC---CCceeeCCCCCHH
Q 046770 302 GKRFLLVLDDVWNEN-----------YNDWIDLSRPFQDGA--PGSKIIITTRNADAAL--IMG---TVQAYPLKGLSND 363 (475)
Q Consensus 302 ~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~~~--~gs~ilvTtR~~~v~~--~~~---~~~~~~l~~L~~~ 363 (475)
--+++|.||.++... .....+++..+.... .+.-||-.|..++... .+. -...+.++.-+.+
T Consensus 526 ~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~ 605 (693)
T KOG0730|consen 526 VAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLE 605 (693)
T ss_pred cCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHH
Confidence 456889999884211 011333444443222 2333444444433321 223 2356667777777
Q ss_pred HHHHHHhhcccCC
Q 046770 364 DCMCLFTQHSLET 376 (475)
Q Consensus 364 ~~~~lf~~~~~~~ 376 (475)
.-.++|+.++-..
T Consensus 606 aR~~Ilk~~~kkm 618 (693)
T KOG0730|consen 606 ARLEILKQCAKKM 618 (693)
T ss_pred HHHHHHHHHHhcC
Confidence 7888998887543
No 236
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.40 E-value=0.029 Score=49.27 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=21.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.+++|+|+.|.|||||.+.++.-
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 48999999999999999999874
No 237
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.39 E-value=0.014 Score=54.17 Aligned_cols=123 Identities=13% Similarity=0.101 Sum_probs=70.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecC-----CCCHHHHHHHHHHHhhcCCC------CCCChHHHH
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQ-----DFDIIRVTKSILRSVAMGIV------DHNDLNLLQ 293 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~-----~~~~~~~l~~il~~l~~~~~------~~~~~~~l~ 293 (475)
.+++|+|.+|+|||||++.+..=. ..-...++..-.+ .....+-..++++.++.... ..-+-.+.+
T Consensus 40 e~~glVGESG~GKSTlgr~i~~L~---~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLILGLE---EPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHHcCc---CCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 489999999999999999998732 2222333332111 12233445566666553321 111122222
Q ss_pred H-HHHHHhCCceEEEEEECCCCC-ChhhHhHhhCcCCC--CCCCcEEEEecCChHHHHhcC
Q 046770 294 W-KLKKQLFGKRFLLVLDDVWNE-NYNDWIDLSRPFQD--GAPGSKIIITTRNADAALIMG 350 (475)
Q Consensus 294 ~-~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~ilvTtR~~~v~~~~~ 350 (475)
+ .+.+.|.-++-|||.|+.-+. +...-.+++..+.. ...|...+..|.+-.+...++
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhc
Confidence 2 466778888999999997432 22222333333331 234677888888877776655
No 238
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.066 Score=55.98 Aligned_cols=164 Identities=16% Similarity=0.167 Sum_probs=86.2
Q ss_pred cccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHH
Q 046770 194 EAKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTK 273 (475)
Q Consensus 194 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~ 273 (475)
+.+.+|.++-+++|++.+.-..-.+. -+-++++.+|++|+|||++|+.++.- ....| +-++++.-.|..+|
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs--~qGkIlCf~GPPGVGKTSI~kSIA~A--LnRkF---fRfSvGG~tDvAeI-- 480 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGS--VQGKILCFVGPPGVGKTSIAKSIARA--LNRKF---FRFSVGGMTDVAEI-- 480 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhccc--CCCcEEEEeCCCCCCcccHHHHHHHH--hCCce---EEEeccccccHHhh--
Confidence 45689999999999998753111111 33479999999999999999999873 33223 11344554443332
Q ss_pred HHHHHhhcCCC--CCCChHHHHHHHHHHhCCceEEEEEECCCCCCh----hhHhHhhCcCCCC-------------CCCc
Q 046770 274 SILRSVAMGIV--DHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENY----NDWIDLSRPFQDG-------------APGS 334 (475)
Q Consensus 274 ~il~~l~~~~~--~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~----~~~~~l~~~l~~~-------------~~gs 334 (475)
.++.. -..-...+++.|+.. +..+-|+.||.|..... +.=..++..|.+. --=|
T Consensus 481 ------kGHRRTYVGAMPGkiIq~LK~v-~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLS 553 (906)
T KOG2004|consen 481 ------KGHRRTYVGAMPGKIIQCLKKV-KTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLS 553 (906)
T ss_pred ------cccceeeeccCChHHHHHHHhh-CCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchh
Confidence 11110 011112233333332 34467889999843210 0111122211110 0124
Q ss_pred EEEE--ecCChH--HHHhcCCCceeeCCCCCHHHHHHHHhhcc
Q 046770 335 KIII--TTRNAD--AALIMGTVQAYPLKGLSNDDCMCLFTQHS 373 (475)
Q Consensus 335 ~ilv--TtR~~~--v~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 373 (475)
+|++ |...-+ -........+++|.+...+|-..+-.++.
T Consensus 554 kVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 554 KVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred heEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 5543 322211 11222345778888888888777666554
No 239
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.37 E-value=0.0063 Score=54.83 Aligned_cols=77 Identities=21% Similarity=0.172 Sum_probs=43.5
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHH--hhcCCCCCCChHHHHHHHHHHh
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRS--VAMGIVDHNDLNLLQWKLKKQL 300 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~--l~~~~~~~~~~~~l~~~l~~~l 300 (475)
.+.+|+|.|.+|+||||+|+.++... ...+ ..-++...-+...+. ...... ..-..+...+.+.+...|...+
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~--~~~~--~~~I~~D~YYk~~~~-~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~ 81 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL--GVEK--VVVISLDDYYKDQSH-LPFEERNKINYDHPEAFDLDLLIEHLKDLK 81 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh--CcCc--ceEeeccccccchhh-cCHhhcCCcCccChhhhcHHHHHHHHHHHH
Confidence 46799999999999999999999843 3221 111221111110000 000000 1111234566777888888888
Q ss_pred CCce
Q 046770 301 FGKR 304 (475)
Q Consensus 301 ~~kr 304 (475)
+|++
T Consensus 82 ~g~~ 85 (218)
T COG0572 82 QGKP 85 (218)
T ss_pred cCCc
Confidence 8887
No 240
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.37 E-value=0.025 Score=57.23 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=22.5
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcCc
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYNDS 248 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 248 (475)
...+|.++|.+|+||||++..++...
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L 119 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYF 119 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46899999999999999999887643
No 241
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.36 E-value=0.013 Score=57.88 Aligned_cols=89 Identities=17% Similarity=0.150 Sum_probs=48.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecC-CCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQ-DFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGK 303 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~-~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 303 (475)
.++.++|+.|+||||++..+............+..++... .....+-+....+.++.......+...+...+.+ +.++
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~-l~~~ 216 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE-LRNK 216 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH-hcCC
Confidence 6899999999999999999887422121122344454322 1233444555555554433222233333333433 3444
Q ss_pred eEEEEEECCCCC
Q 046770 304 RFLLVLDDVWNE 315 (475)
Q Consensus 304 r~LlVlDdv~~~ 315 (475)
=+|++|.....
T Consensus 217 -DlVLIDTaG~~ 227 (374)
T PRK14722 217 -HMVLIDTIGMS 227 (374)
T ss_pred -CEEEEcCCCCC
Confidence 45669998544
No 242
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.36 E-value=0.014 Score=51.47 Aligned_cols=113 Identities=25% Similarity=0.341 Sum_probs=59.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC---cccccC---cC--eEEEEEecCCCCHHHHHHHHHHHhhcCCC----CCCCh---
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND---SRVQCH---FD--LKAWTYVSQDFDIIRVTKSILRSVAMGIV----DHNDL--- 289 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~---~~~~~~---F~--~~~wv~v~~~~~~~~~l~~il~~l~~~~~----~~~~~--- 289 (475)
.+++|+|+.|+|||||.+.+..+ ..+... |. ...|+ .+ .+.+..+..... ....+
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSgG 91 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSGG 91 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCHH
Confidence 58999999999999999988632 111111 10 12232 22 345555543211 11111
Q ss_pred HHHHHHHHHHhCCc--eEEEEEECCCC-CChhhHhHhhCcCCC-CCCCcEEEEecCChHHHH
Q 046770 290 NLLQWKLKKQLFGK--RFLLVLDDVWN-ENYNDWIDLSRPFQD-GAPGSKIIITTRNADAAL 347 (475)
Q Consensus 290 ~~l~~~l~~~l~~k--r~LlVlDdv~~-~~~~~~~~l~~~l~~-~~~gs~ilvTtR~~~v~~ 347 (475)
....-.+...+-.+ +=+++||+.-. .+......+...+.. ...|..||++|.+.+...
T Consensus 92 q~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 92 ELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 11222344555556 67888999733 233333334333332 124677888888876654
No 243
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.36 E-value=0.018 Score=51.92 Aligned_cols=104 Identities=17% Similarity=0.206 Sum_probs=52.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHh----
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQL---- 300 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l---- 300 (475)
+++.|.|++|.||||++..+....... ...+.+......-. ..+-+..+... .+.. ..+....
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~---g~~v~~~apT~~Aa----~~L~~~~~~~a---~Ti~---~~l~~~~~~~~ 85 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAA---GKRVIGLAPTNKAA----KELREKTGIEA---QTIH---SFLYRIPNGDD 85 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHT---T--EEEEESSHHHH----HHHHHHHTS-E---EEHH---HHTTEECCEEC
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhC---CCeEEEECCcHHHH----HHHHHhhCcch---hhHH---HHHhcCCcccc
Confidence 588899999999999999887633222 12333333332222 22222222110 0000 0000000
Q ss_pred -----CCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCCh
Q 046770 301 -----FGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNA 343 (475)
Q Consensus 301 -----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 343 (475)
..+.-+||+|++.-.+...+..+...... .++++|+.--..
T Consensus 86 ~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 86 EGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp CSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred cccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 12345999999976665667776666554 477888766543
No 244
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.34 E-value=0.039 Score=50.30 Aligned_cols=57 Identities=14% Similarity=0.216 Sum_probs=36.6
Q ss_pred HHHHHHhCCceEEEEEECCC-CCChhhHhHhhCcCCC--CCCCcEEEEecCChHHHHhcC
Q 046770 294 WKLKKQLFGKRFLLVLDDVW-NENYNDWIDLSRPFQD--GAPGSKIIITTRNADAALIMG 350 (475)
Q Consensus 294 ~~l~~~l~~kr~LlVlDdv~-~~~~~~~~~l~~~l~~--~~~gs~ilvTtR~~~v~~~~~ 350 (475)
-.+.+.|-..+-+|+-|+-- +-+...=..+...|.. ...|..||+.|.++.++..+.
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 35677777888899999852 2222222333333332 235789999999999998654
No 245
>PRK07667 uridine kinase; Provisional
Probab=96.34 E-value=0.0052 Score=55.25 Aligned_cols=38 Identities=21% Similarity=0.369 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 204 REEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 204 ~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.+.|.+.+.. .. +...+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~~~~-~~-----~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKK-HK-----ENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHh-cC-----CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4566766655 32 33489999999999999999999874
No 246
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.31 E-value=0.012 Score=51.35 Aligned_cols=115 Identities=17% Similarity=0.117 Sum_probs=59.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCC--CCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQD--FDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFG 302 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~--~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 302 (475)
.+++|+|+.|.|||||.+.++... ......+++.-... .+..+.... .+..- ..-..-+...-.+.+.+-.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~~---~i~~~-~qLS~G~~qrl~laral~~ 99 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARRA---GIAMV-YQLSVGERQMVEIARALAR 99 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHhc---CeEEE-EecCHHHHHHHHHHHHHhc
Confidence 489999999999999999998742 22334444422111 111111110 11100 0111112222345556667
Q ss_pred ceEEEEEECCCC-CChhhHhHhhCcCCC-CCCCcEEEEecCChHHH
Q 046770 303 KRFLLVLDDVWN-ENYNDWIDLSRPFQD-GAPGSKIIITTRNADAA 346 (475)
Q Consensus 303 kr~LlVlDdv~~-~~~~~~~~l~~~l~~-~~~gs~ilvTtR~~~v~ 346 (475)
++-++++|+.-. .+......+...+.. ...+..||++|.+....
T Consensus 100 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 778999999743 233333344333332 12366788888886543
No 247
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.29 E-value=0.018 Score=50.74 Aligned_cols=23 Identities=43% Similarity=0.644 Sum_probs=20.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.+++|+|+.|.|||||.+.++..
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 48999999999999999999864
No 248
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.26 E-value=0.047 Score=54.38 Aligned_cols=90 Identities=12% Similarity=0.117 Sum_probs=50.4
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcCccccc--CcCeEEEEEecCCCCH--HHHHHHHHHHhhcCCCCCCChHHHHHHHHH
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYNDSRVQC--HFDLKAWTYVSQDFDI--IRVTKSILRSVAMGIVDHNDLNLLQWKLKK 298 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~--~F~~~~wv~v~~~~~~--~~~l~~il~~l~~~~~~~~~~~~l~~~l~~ 298 (475)
..+++.++|+.|+||||.+..++....... +-..+..+++. ++.. .+.+....+.++...........+...+.+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 357999999999999999988876432211 11223334433 3332 223444444444433333444555555544
Q ss_pred HhCCceEEEEEECCCCC
Q 046770 299 QLFGKRFLLVLDDVWNE 315 (475)
Q Consensus 299 ~l~~kr~LlVlDdv~~~ 315 (475)
. .+.=++++|.....
T Consensus 252 ~--~~~DlVLIDTaGr~ 266 (388)
T PRK12723 252 S--KDFDLVLVDTIGKS 266 (388)
T ss_pred h--CCCCEEEEcCCCCC
Confidence 3 33458888988544
No 249
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.25 E-value=0.019 Score=55.89 Aligned_cols=55 Identities=13% Similarity=0.157 Sum_probs=39.3
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcCccccc----CcCeEEEEEecCCCCHHHHHHHHHHHh
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYNDSRVQC----HFDLKAWTYVSQDFDIIRVTKSILRSV 279 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~l~~il~~l 279 (475)
-+++-|+|++|+|||+|+.+++.+..... .=..++||+....|++.++. ++++.+
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~ 153 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEAR 153 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHc
Confidence 47889999999999999999876432211 11268999999988877654 344443
No 250
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.25 E-value=0.018 Score=54.33 Aligned_cols=89 Identities=22% Similarity=0.115 Sum_probs=56.6
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHH-hhcCC-CCCCChH---HHHHHH
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRS-VAMGI-VDHNDLN---LLQWKL 296 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~-l~~~~-~~~~~~~---~l~~~l 296 (475)
+.-+++=|+|+.|+||||||.+++-+. +..-...+|++.-..+++..+. ++... +..-. ....+.+ .+...+
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~a--q~~g~~a~fIDtE~~l~p~r~~-~l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVANA--QKPGGKAAFIDTEHALDPERAK-QLGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHHh--hcCCCeEEEEeCCCCCCHHHHH-HHHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 344788899999999999999987643 3333478999999999987664 33333 21110 1223333 333344
Q ss_pred HHHhCCceEEEEEECCC
Q 046770 297 KKQLFGKRFLLVLDDVW 313 (475)
Q Consensus 297 ~~~l~~kr~LlVlDdv~ 313 (475)
......+--|+|+|.+-
T Consensus 135 ~~~~~~~i~LvVVDSva 151 (279)
T COG0468 135 ARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHhccCCCCEEEEecCc
Confidence 44444445699999983
No 251
>PHA02244 ATPase-like protein
Probab=96.24 E-value=0.018 Score=56.30 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.5
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 046770 226 VVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
-|.|+|++|+|||+||+.++..
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999873
No 252
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.0097 Score=61.80 Aligned_cols=71 Identities=18% Similarity=0.197 Sum_probs=46.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCC--HHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFD--IIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFG 302 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~--~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 302 (475)
.-|.|.|+.|+|||+||+.+++... +++.-++.+++++.-.. ...+. ..+.....+.+..
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQ-----------------k~l~~vfse~~~~ 493 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQ-----------------KFLNNVFSEALWY 493 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHH-----------------HHHHHHHHHHHhh
Confidence 5688999999999999999998654 45555666777665221 11111 1112233445567
Q ss_pred ceEEEEEECCC
Q 046770 303 KRFLLVLDDVW 313 (475)
Q Consensus 303 kr~LlVlDdv~ 313 (475)
.+-+|||||++
T Consensus 494 ~PSiIvLDdld 504 (952)
T KOG0735|consen 494 APSIIVLDDLD 504 (952)
T ss_pred CCcEEEEcchh
Confidence 78999999994
No 253
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.23 E-value=0.028 Score=49.66 Aligned_cols=102 Identities=14% Similarity=0.134 Sum_probs=54.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEE------ecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHH
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTY------VSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKK 298 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~------v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~ 298 (475)
.+++|+|+.|.|||||.+.+..-.. .....+++. +.+... -..-....-.+.+
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~lar 84 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIAA 84 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHHH
Confidence 4899999999999999999987422 112222221 111111 1111122223555
Q ss_pred HhCCceEEEEEECCCCC-ChhhHhHhhCcCCCC-CC-CcEEEEecCChHHHH
Q 046770 299 QLFGKRFLLVLDDVWNE-NYNDWIDLSRPFQDG-AP-GSKIIITTRNADAAL 347 (475)
Q Consensus 299 ~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~-gs~ilvTtR~~~v~~ 347 (475)
.+..++-++++|+--.. +......+...+... .. +..||++|.+.....
T Consensus 85 al~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 85 ALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 56667789999997432 222333333333211 12 356777777755444
No 254
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.23 E-value=0.0033 Score=52.13 Aligned_cols=21 Identities=38% Similarity=0.582 Sum_probs=19.2
Q ss_pred EEEEccCCCcHHHHHHHHHcC
Q 046770 227 VSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 227 v~I~G~gGiGKTtLA~~v~~~ 247 (475)
|.|.|++|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999874
No 255
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.23 E-value=0.043 Score=58.83 Aligned_cols=130 Identities=13% Similarity=0.113 Sum_probs=69.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCce
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKR 304 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr 304 (475)
+-|.|+|++|+|||++|+.+++.. ...| +.++.+. +. .... ......+...+.......+
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~--~~~f---~~is~~~------~~----~~~~-----g~~~~~~~~~f~~a~~~~P 245 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEA--KVPF---FTISGSD------FV----EMFV-----GVGASRVRDMFEQAKKAAP 245 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHc--CCCE---EEEehHH------hH----Hhhh-----cccHHHHHHHHHHHHhcCC
Confidence 348899999999999999998743 2222 1222111 11 1110 1111222333333344568
Q ss_pred EEEEEECCCCCC----------hhhHh----HhhCcCC--CCCCCcEEEEecCChHHHH--hcC---CCceeeCCCCCHH
Q 046770 305 FLLVLDDVWNEN----------YNDWI----DLSRPFQ--DGAPGSKIIITTRNADAAL--IMG---TVQAYPLKGLSND 363 (475)
Q Consensus 305 ~LlVlDdv~~~~----------~~~~~----~l~~~l~--~~~~gs~ilvTtR~~~v~~--~~~---~~~~~~l~~L~~~ 363 (475)
++|+||+++... ...+. .++..+. ....+.-+|.||..++... ... -...+.+...+.+
T Consensus 246 ~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~ 325 (644)
T PRK10733 246 CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVR 325 (644)
T ss_pred cEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHH
Confidence 899999985321 11222 2222222 1223556666777654322 111 2356778888888
Q ss_pred HHHHHHhhccc
Q 046770 364 DCMCLFTQHSL 374 (475)
Q Consensus 364 ~~~~lf~~~~~ 374 (475)
+-.+++..+..
T Consensus 326 ~R~~Il~~~~~ 336 (644)
T PRK10733 326 GREQILKVHMR 336 (644)
T ss_pred HHHHHHHHHhh
Confidence 88888877653
No 256
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.23 E-value=0.023 Score=54.17 Aligned_cols=80 Identities=19% Similarity=0.068 Sum_probs=42.1
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHcCcccccCc-C-eEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHH
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHF-D-LKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQ 299 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F-~-~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~ 299 (475)
....+|+|.|+.|+||||+|+.+..- ..... . .+..++...-......+...-..-....+..-+...+...+...
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~l--l~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~L 137 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQAL--LSRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDL 137 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH--HhhcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHH
Confidence 45689999999999999999876542 11111 1 23333333322222222211000011223455666677777766
Q ss_pred hCCc
Q 046770 300 LFGK 303 (475)
Q Consensus 300 l~~k 303 (475)
..|+
T Consensus 138 k~g~ 141 (290)
T TIGR00554 138 KSGK 141 (290)
T ss_pred HCCC
Confidence 6655
No 257
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.22 E-value=0.004 Score=52.82 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=21.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDS 248 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~ 248 (475)
--|.|+|++|+|||||++.+.+..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 457899999999999999998743
No 258
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.22 E-value=0.047 Score=51.89 Aligned_cols=52 Identities=17% Similarity=0.169 Sum_probs=35.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHh
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSV 279 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l 279 (475)
.++.|.|.+|+||||++.+++.+.. ..+=..++|++... +..++...++..+
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~--~~~~~~~r~~~~~ 82 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE--PVVRTARRLLGQY 82 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc--CHHHHHHHHHHHH
Confidence 5888999999999999998876432 22124577887765 3456666665544
No 259
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.1 Score=54.31 Aligned_cols=134 Identities=16% Similarity=0.086 Sum_probs=76.1
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhC
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLF 301 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 301 (475)
...+.+.++|++|.|||.||+.+++. ...+| +.+... +++... -......+........+
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~--~~~~f-----i~v~~~--------~l~sk~-----vGesek~ir~~F~~A~~ 333 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALE--SRSRF-----ISVKGS--------ELLSKW-----VGESEKNIRELFEKARK 333 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhh--CCCeE-----EEeeCH--------HHhccc-----cchHHHHHHHHHHHHHc
Confidence 44568999999999999999999993 33333 222221 111111 11122233333444446
Q ss_pred CceEEEEEECCCCC------C-----hhhHhHhhCcCC--CCCCCcEEEEecCChHHHHh---c--CCCceeeCCCCCHH
Q 046770 302 GKRFLLVLDDVWNE------N-----YNDWIDLSRPFQ--DGAPGSKIIITTRNADAALI---M--GTVQAYPLKGLSND 363 (475)
Q Consensus 302 ~kr~LlVlDdv~~~------~-----~~~~~~l~~~l~--~~~~gs~ilvTtR~~~v~~~---~--~~~~~~~l~~L~~~ 363 (475)
..++.|++|++..- + .....+++..+. ....+..+|-||..+..... . .-...+.+.+-+.+
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 78999999999421 1 012333444443 22234455666665433221 1 12356888888999
Q ss_pred HHHHHHhhcccC
Q 046770 364 DCMCLFTQHSLE 375 (475)
Q Consensus 364 ~~~~lf~~~~~~ 375 (475)
+..+.|..+...
T Consensus 414 ~r~~i~~~~~~~ 425 (494)
T COG0464 414 ERLEIFKIHLRD 425 (494)
T ss_pred HHHHHHHHHhcc
Confidence 999999988753
No 260
>PRK06547 hypothetical protein; Provisional
Probab=96.21 E-value=0.0067 Score=53.33 Aligned_cols=26 Identities=38% Similarity=0.362 Sum_probs=23.1
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
....+|.|.|++|+||||+|+.+.+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999874
No 261
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.19 E-value=0.023 Score=52.86 Aligned_cols=48 Identities=17% Similarity=0.216 Sum_probs=33.4
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHH
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKS 274 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~ 274 (475)
.-+++.|.|++|+|||+||.++.... . ..-+..+|++... ++.++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~-~-~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCcEEEEEeeC--CHHHHHHH
Confidence 34789999999999999998876532 1 2235678887765 44455554
No 262
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.16 E-value=0.018 Score=60.05 Aligned_cols=134 Identities=16% Similarity=0.129 Sum_probs=75.2
Q ss_pred cccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHH
Q 046770 194 EAKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTK 273 (475)
Q Consensus 194 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~ 273 (475)
...++|+...++++.+.+..... .-.-|.|+|..|+|||++|+.+.+..... -...+.|++....+ ..+.
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~------~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~--~~p~v~v~c~~~~~--~~~e 255 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA------SDLNVLILGETGVGKELVARAIHAASPRA--DKPLVYLNCAALPE--SLAE 255 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC------CCCcEEEECCCCccHHHHHHHHHHhCCcC--CCCeEEEEcccCCh--HHHH
Confidence 34689999999999888876321 22467899999999999999998743211 11334455554332 2222
Q ss_pred HHHHHhhcCCCCC--CChHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCCC-----------CCcEEEEec
Q 046770 274 SILRSVAMGIVDH--NDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDGA-----------PGSKIIITT 340 (475)
Q Consensus 274 ~il~~l~~~~~~~--~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTt 340 (475)
. .+.+...+. .........+. ....=.|+||++..........+...+..+. ...+||.||
T Consensus 256 ~---~lfG~~~g~~~ga~~~~~g~~~---~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t 329 (509)
T PRK05022 256 S---ELFGHVKGAFTGAISNRSGKFE---LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAAT 329 (509)
T ss_pred H---HhcCccccccCCCcccCCcchh---hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEec
Confidence 1 222211110 00000000111 1122347899998877666667766554321 245888888
Q ss_pred CCh
Q 046770 341 RNA 343 (475)
Q Consensus 341 R~~ 343 (475)
...
T Consensus 330 ~~~ 332 (509)
T PRK05022 330 NRD 332 (509)
T ss_pred CCC
Confidence 753
No 263
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.14 E-value=0.017 Score=55.66 Aligned_cols=83 Identities=23% Similarity=0.215 Sum_probs=51.7
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCC-----CCCChHHHHHHHHH
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIV-----DHNDLNLLQWKLKK 298 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~-----~~~~~~~l~~~l~~ 298 (475)
-+++-|+|+.|+||||||..+... ....-..++|+.....+++. .++.++.... .....++..+....
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e~ 125 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAEQ 125 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHHH
Confidence 368999999999999999988874 33334578999998877753 3444443321 23444555666666
Q ss_pred HhC-CceEEEEEECCC
Q 046770 299 QLF-GKRFLLVLDDVW 313 (475)
Q Consensus 299 ~l~-~kr~LlVlDdv~ 313 (475)
.++ +.--++|+|-|-
T Consensus 126 lirsg~~~lVVvDSv~ 141 (322)
T PF00154_consen 126 LIRSGAVDLVVVDSVA 141 (322)
T ss_dssp HHHTTSESEEEEE-CT
T ss_pred HhhcccccEEEEecCc
Confidence 664 344589999983
No 264
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.13 E-value=0.038 Score=52.21 Aligned_cols=89 Identities=11% Similarity=0.148 Sum_probs=46.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCC-CHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhC-C
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDF-DIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLF-G 302 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~-~ 302 (475)
.++.++|.+|+||||++..+..... ..=..+.+++..... ....-+....+.++.......+...+...+...-. +
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~--~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFH--GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 5899999999999999998866321 111234455543221 12222222222222222222344555544443322 2
Q ss_pred ceEEEEEECCCCC
Q 046770 303 KRFLLVLDDVWNE 315 (475)
Q Consensus 303 kr~LlVlDdv~~~ 315 (475)
+.=++++|.....
T Consensus 154 ~~D~ViIDt~Gr~ 166 (270)
T PRK06731 154 RVDYILIDTAGKN 166 (270)
T ss_pred CCCEEEEECCCCC
Confidence 3458888988554
No 265
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.13 E-value=0.027 Score=49.54 Aligned_cols=22 Identities=36% Similarity=0.523 Sum_probs=19.6
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 046770 226 VVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
++.++|++|+||||++..++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999988764
No 266
>PTZ00301 uridine kinase; Provisional
Probab=96.11 E-value=0.0068 Score=55.12 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHHc
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
..+|+|.|.+|+||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 47999999999999999998875
No 267
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.036 Score=60.12 Aligned_cols=121 Identities=12% Similarity=0.087 Sum_probs=69.2
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHH
Q 046770 196 KVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSI 275 (475)
Q Consensus 196 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~i 275 (475)
.++|-++.+..|-+.+..+..+...........+.|+.|+|||-||+.++.. +-+..+..+-++.++- ..
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~--~Fgse~~~IriDmse~------~e-- 632 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEY--VFGSEENFIRLDMSEF------QE-- 632 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHH--HcCCccceEEechhhh------hh--
Confidence 4677777777777777653322221124567789999999999999998873 2222333343333331 11
Q ss_pred HHHhhcCCCCCCChHHHHHHHHHHhCCceE-EEEEECCCCCChhhHhHhhCcC
Q 046770 276 LRSVAMGIVDHNDLNLLQWKLKKQLFGKRF-LLVLDDVWNENYNDWIDLSRPF 327 (475)
Q Consensus 276 l~~l~~~~~~~~~~~~l~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~l~~~l 327 (475)
...+....++--. ..-...|.+.++.++| +|+||||...+......+...+
T Consensus 633 vskligsp~gyvG-~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~l 684 (898)
T KOG1051|consen 633 VSKLIGSPPGYVG-KEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLL 684 (898)
T ss_pred hhhccCCCccccc-chhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHH
Confidence 2233222221111 1223467778888877 6667999877665555444443
No 268
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.10 E-value=0.027 Score=52.16 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=23.2
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
....+++|.|+.|.|||||++.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999998874
No 269
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.10 E-value=0.035 Score=50.70 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=20.4
Q ss_pred cEEEEEEccCCCcHHHHHHHHHc
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+++.|+|+.|.|||||.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 37899999999999999998863
No 270
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.015 Score=58.57 Aligned_cols=55 Identities=35% Similarity=0.389 Sum_probs=37.7
Q ss_pred cccccc---hhHHHHHHHHhcCCCCCC-CCCccEEEEEEccCCCcHHHHHHHHHcCccc
Q 046770 196 KVYGRS---KEREEIVELLLKEDGTSH-NNNHFSVVSIIGMGGLGKTTLAQLVYNDSRV 250 (475)
Q Consensus 196 ~~vGR~---~e~~~l~~~L~~~~~~~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 250 (475)
++-|-+ .|+++|++.|.++..-.. .+.=++-|.++|++|.|||-||+.++-...+
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V 363 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV 363 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC
Confidence 345544 578888999877321100 0133466889999999999999999986543
No 271
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.10 E-value=0.033 Score=51.56 Aligned_cols=48 Identities=19% Similarity=0.113 Sum_probs=30.9
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHH
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSI 275 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~i 275 (475)
-.++.|.|++|+||||||.+++... .+.. ...++++... +..++++.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 3589999999999999986665532 1222 3456666333 445555555
No 272
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.10 E-value=0.036 Score=48.83 Aligned_cols=117 Identities=15% Similarity=0.150 Sum_probs=58.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhc--CC---CCC--------CCh-H
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAM--GI---VDH--------NDL-N 290 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~--~~---~~~--------~~~-~ 290 (475)
.+++|+|+.|.|||||.+.++.... .....+++.-....+.. ..+-..+.. +. ... -+. +
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~ 100 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGGM 100 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHHH
Confidence 4899999999999999999987421 12233332111000000 000000000 00 000 111 1
Q ss_pred HHHHHHHHHhCCceEEEEEECCCCC-ChhhHhHhhCcCCC-CCCCcEEEEecCChHHHH
Q 046770 291 LLQWKLKKQLFGKRFLLVLDDVWNE-NYNDWIDLSRPFQD-GAPGSKIIITTRNADAAL 347 (475)
Q Consensus 291 ~l~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~ilvTtR~~~v~~ 347 (475)
...-.+...+..++=++++|+.-.. +......+...+.. ...|..||++|.+.....
T Consensus 101 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 101 KQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 1222455666778889999997432 23333333333332 123677888888866544
No 273
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.09 E-value=0.0049 Score=52.29 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=19.4
Q ss_pred EEEEEccCCCcHHHHHHHHHc
Q 046770 226 VVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~ 246 (475)
+|.+.|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999985
No 274
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.07 E-value=0.027 Score=55.13 Aligned_cols=89 Identities=15% Similarity=0.085 Sum_probs=54.7
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcCcccc---c-CcCeEEEEEecCCCCHHHHHHHHHHHhhcCCC---------CCCCh
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYNDSRVQ---C-HFDLKAWTYVSQDFDIIRVTKSILRSVAMGIV---------DHNDL 289 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---~-~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~---------~~~~~ 289 (475)
.-.++-|.|.+|+|||+|+..++-..... . .-..++|++....|.+.++ .++++.++.... ...+.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~~~~~l~~i~~~~~~~~ 200 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLNGADVLENVAYARAYNT 200 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCChhhhccceEEEecCCH
Confidence 34788899999999999998877432211 1 1126899999999988776 455555443221 12233
Q ss_pred HHHHHHHH---HHh-CCceEEEEEECC
Q 046770 290 NLLQWKLK---KQL-FGKRFLLVLDDV 312 (475)
Q Consensus 290 ~~l~~~l~---~~l-~~kr~LlVlDdv 312 (475)
+.+...+. ..+ ..+.-|||+|-+
T Consensus 201 e~~~~ll~~~~~~~~~~~~~LIVIDSI 227 (342)
T PLN03186 201 DHQSELLLEAASMMAETRFALMIVDSA 227 (342)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEeCc
Confidence 33333332 223 344558899987
No 275
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.07 E-value=0.0054 Score=55.92 Aligned_cols=26 Identities=35% Similarity=0.590 Sum_probs=23.1
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.+..+|+|.|++|+|||||++.++..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999999999874
No 276
>PRK14974 cell division protein FtsY; Provisional
Probab=96.06 E-value=0.045 Score=53.41 Aligned_cols=90 Identities=13% Similarity=0.109 Sum_probs=46.7
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCC--HHHHHHHHHHHhhcCCC---CCCChHH-HHHHH
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFD--IIRVTKSILRSVAMGIV---DHNDLNL-LQWKL 296 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~--~~~~l~~il~~l~~~~~---~~~~~~~-l~~~l 296 (475)
+..++.++|++|+||||++..++.... ...+. ++.+. .+.+. ..+.+......++.... ...+... ....+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~~-V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGFS-VVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCe-EEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 468999999999999998877775322 12232 23333 22222 23334445555543221 1222222 23333
Q ss_pred HHHhCCceEEEEEECCCCC
Q 046770 297 KKQLFGKRFLLVLDDVWNE 315 (475)
Q Consensus 297 ~~~l~~kr~LlVlDdv~~~ 315 (475)
........=++++|.....
T Consensus 216 ~~~~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGRM 234 (336)
T ss_pred HHHHhCCCCEEEEECCCcc
Confidence 3322222238999998654
No 277
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.05 E-value=0.0035 Score=55.06 Aligned_cols=40 Identities=25% Similarity=0.103 Sum_probs=27.2
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQ 264 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~ 264 (475)
..++.+.|+.|+|||.||+.+.+...+ +.....+-++.+.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~ 42 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSE 42 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhc
Confidence 468899999999999999999873221 2333444444444
No 278
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.05 E-value=0.026 Score=56.93 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=20.4
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHc
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+.++.++|++|+||||+|..++.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 457999999999999999776655
No 279
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.02 E-value=0.054 Score=53.27 Aligned_cols=90 Identities=13% Similarity=0.101 Sum_probs=52.5
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCC-CHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDF-DIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLF 301 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 301 (475)
..+++.|+|+.|+||||++..++.....+ . ..+.+++....- ...+-+....+.++.......+...+...+...-.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~-g-~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQ-N-RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-C-CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 35799999999999999998887643212 1 234555543221 22444455555444332233455666555554431
Q ss_pred -CceEEEEEECCCC
Q 046770 302 -GKRFLLVLDDVWN 314 (475)
Q Consensus 302 -~kr~LlVlDdv~~ 314 (475)
+..=+|++|-...
T Consensus 283 ~~~~D~VLIDTAGr 296 (407)
T PRK12726 283 VNCVDHILIDTVGR 296 (407)
T ss_pred cCCCCEEEEECCCC
Confidence 3345788898854
No 280
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.02 E-value=0.54 Score=45.21 Aligned_cols=133 Identities=9% Similarity=0.055 Sum_probs=77.2
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcCc--------ccccCcCeEEEEEe-cCCCCHHHHHHHHHHHhhcCCCCCCChHHHHH
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYNDS--------RVQCHFDLKAWTYV-SQDFDIIRVTKSILRSVAMGIVDHNDLNLLQW 294 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~~--------~~~~~F~~~~wv~v-~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~ 294 (475)
..+..++|..|.||+++|..+.+.. ....|-+...++.. .....+.++ +++.+.+....
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~I-r~l~~~~~~~~----------- 85 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEF-LSAINKLYFSS----------- 85 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHH-HHHHHHhccCC-----------
Confidence 3566799999999999998886632 01111111222211 111121111 12222221110
Q ss_pred HHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCC-hHHH-HhcCCCceeeCCCCCHHHHHHHHhhc
Q 046770 295 KLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRN-ADAA-LIMGTVQAYPLKGLSNDDCMCLFTQH 372 (475)
Q Consensus 295 ~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~ 372 (475)
.-.+.+=++|+||+...+......++..+..-...+.+|++|.+ ..+. ...+....+++.+++.++....+...
T Consensus 86 ----~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~ 161 (299)
T PRK07132 86 ----FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK 161 (299)
T ss_pred ----cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc
Confidence 00146678899999777666777788888765567777765544 3333 23445678999999999998877754
No 281
>PRK10867 signal recognition particle protein; Provisional
Probab=95.99 E-value=0.024 Score=57.22 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=19.8
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHc
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
...+|.++|++|+||||++..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 357999999999999997766654
No 282
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.98 E-value=0.033 Score=57.04 Aligned_cols=88 Identities=17% Similarity=0.067 Sum_probs=44.7
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCC--HHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFD--IIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLF 301 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~--~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 301 (475)
-.+++|+|++|+||||++..+............+..++.. .+. ..+.+......++.......+...+...+.+. .
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtD-tyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l-~ 427 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTD-TQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL-R 427 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecc-cccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh-c
Confidence 4789999999999999998887632211111233344332 222 12222222222222222223334444444433 2
Q ss_pred CceEEEEEECCCC
Q 046770 302 GKRFLLVLDDVWN 314 (475)
Q Consensus 302 ~kr~LlVlDdv~~ 314 (475)
..=+|++|....
T Consensus 428 -~~DLVLIDTaG~ 439 (559)
T PRK12727 428 -DYKLVLIDTAGM 439 (559)
T ss_pred -cCCEEEecCCCc
Confidence 234788888753
No 283
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.13 Score=48.36 Aligned_cols=178 Identities=15% Similarity=0.106 Sum_probs=89.5
Q ss_pred cccccchhHHHHHHHHhcCCC----CCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHH
Q 046770 196 KVYGRSKEREEIVELLLKEDG----TSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRV 271 (475)
Q Consensus 196 ~~vGR~~e~~~l~~~L~~~~~----~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~ 271 (475)
++-|-+..++.|.+.+.-.-. -.+.....+-|.++|++|.|||.||+.|+.... .. |.+|+..
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn--ST-----FFSvSSS------ 200 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN--ST-----FFSVSSS------ 200 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC--Cc-----eEEeehH------
Confidence 456777777766665432100 000013467899999999999999999998532 22 3344441
Q ss_pred HHHHHHHhhcCCCCCCChHHHHHHHHHHh-CCceEEEEEECCCCCC-------hhhHh----HhhCcCC---CCCCCcEE
Q 046770 272 TKSILRSVAMGIVDHNDLNLLQWKLKKQL-FGKRFLLVLDDVWNEN-------YNDWI----DLSRPFQ---DGAPGSKI 336 (475)
Q Consensus 272 l~~il~~l~~~~~~~~~~~~l~~~l~~~l-~~kr~LlVlDdv~~~~-------~~~~~----~l~~~l~---~~~~gs~i 336 (475)
+++..-.++ .+.++..|.+.. +.|+-+|++|.+.... .+.-. +++..+. ....|.-|
T Consensus 201 --DLvSKWmGE------SEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLV 272 (439)
T KOG0739|consen 201 --DLVSKWMGE------SEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLV 272 (439)
T ss_pred --HHHHHHhcc------HHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEE
Confidence 222221111 133444444443 5788899999984311 01111 2223332 22345566
Q ss_pred EEecCChHHHHhcC--CC-ceeeCCCCCHHHHHHH-HhhcccCCCCCCCCchHHHHHHHHHHhcCCc
Q 046770 337 IITTRNADAALIMG--TV-QAYPLKGLSNDDCMCL-FTQHSLETRDFSMHQPLKEIGAKIVIKCNGL 399 (475)
Q Consensus 337 lvTtR~~~v~~~~~--~~-~~~~l~~L~~~~~~~l-f~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~ 399 (475)
|-.|..+-+....- .. ..+- -||++..+..- |+-+++........+++ +++.++.+|.
T Consensus 273 LgATNiPw~LDsAIRRRFekRIY-IPLPe~~AR~~MF~lhlG~tp~~LT~~d~----~eL~~kTeGy 334 (439)
T KOG0739|consen 273 LGATNIPWVLDSAIRRRFEKRIY-IPLPEAHARARMFKLHLGDTPHVLTEQDF----KELARKTEGY 334 (439)
T ss_pred EecCCCchhHHHHHHHHhhccee-ccCCcHHHhhhhheeccCCCccccchhhH----HHHHhhcCCC
Confidence 66777654433211 11 1111 25666666544 44444333332333344 4466666665
No 284
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.97 E-value=0.0052 Score=58.33 Aligned_cols=34 Identities=35% Similarity=0.516 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 205 EEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 205 ~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..+++.+.. .+ +-+.++|+.|+|||++++.....
T Consensus 23 ~~ll~~l~~--------~~-~pvLl~G~~GtGKT~li~~~l~~ 56 (272)
T PF12775_consen 23 SYLLDLLLS--------NG-RPVLLVGPSGTGKTSLIQNFLSS 56 (272)
T ss_dssp HHHHHHHHH--------CT-EEEEEESSTTSSHHHHHHHHHHC
T ss_pred HHHHHHHHH--------cC-CcEEEECCCCCchhHHHHhhhcc
Confidence 445666655 22 45689999999999999998864
No 285
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.96 E-value=0.0054 Score=44.96 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=19.7
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 046770 226 VVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
++.|.|..|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998874
No 286
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.14 Score=51.02 Aligned_cols=154 Identities=11% Similarity=0.035 Sum_probs=79.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCce
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKR 304 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr 304 (475)
|--.++||+|.|||++..+++|... |+..- ...+...+-.+ ++.+|.. ...+
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~----ydIyd-LeLt~v~~n~d-Lr~LL~~----------------------t~~k 287 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN----YDIYD-LELTEVKLDSD-LRHLLLA----------------------TPNK 287 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC----CceEE-eeeccccCcHH-HHHHHHh----------------------CCCC
Confidence 3456999999999999999998532 33111 11111111111 2222221 2335
Q ss_pred EEEEEECCCCC------------------ChhhHhHhhCcCC--CCCC-CcEE-EEecCChHHH--HhcCCC---ceeeC
Q 046770 305 FLLVLDDVWNE------------------NYNDWIDLSRPFQ--DGAP-GSKI-IITTRNADAA--LIMGTV---QAYPL 357 (475)
Q Consensus 305 ~LlVlDdv~~~------------------~~~~~~~l~~~l~--~~~~-gs~i-lvTtR~~~v~--~~~~~~---~~~~l 357 (475)
-+|||.|++.. ....+..++..+. .+++ +-|| |.||...+-. ..+... ..+.+
T Consensus 288 SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~m 367 (457)
T KOG0743|consen 288 SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYM 367 (457)
T ss_pred cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEc
Confidence 67778887421 0012333444332 1222 2355 5566654322 122222 34667
Q ss_pred CCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 046770 358 KGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCLLHGK 413 (475)
Q Consensus 358 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~ 413 (475)
.-=+.+....|+.+...... .+ .++.+|.+...|.-+.=..++..|-.+
T Consensus 368 gyCtf~~fK~La~nYL~~~~---~h----~L~~eie~l~~~~~~tPA~V~e~lm~~ 416 (457)
T KOG0743|consen 368 GYCTFEAFKTLASNYLGIEE---DH----RLFDEIERLIEETEVTPAQVAEELMKN 416 (457)
T ss_pred CCCCHHHHHHHHHHhcCCCC---Cc----chhHHHHHHhhcCccCHHHHHHHHhhc
Confidence 77788888999988875432 12 344445555556655555555555444
No 287
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.95 E-value=0.038 Score=48.24 Aligned_cols=116 Identities=17% Similarity=0.147 Sum_probs=58.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeE--EEEEecCCCCHHHHHHHHHHHhhc-----CC-CCCCC-------h
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLK--AWTYVSQDFDIIRVTKSILRSVAM-----GI-VDHND-------L 289 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~--~wv~v~~~~~~~~~l~~il~~l~~-----~~-~~~~~-------~ 289 (475)
..|-|++..|.||||.|--+.-.. ....+... =|+--........++..+ .+.. .. ....+ .
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra-~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRA-LGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH-HHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHHH
Confidence 578888889999999997665421 11122211 122222223333444332 1110 00 00011 1
Q ss_pred HHHHHHHHHHhCCceE-EEEEECCCC---CChhhHhHhhCcCCCCCCCcEEEEecCCh
Q 046770 290 NLLQWKLKKQLFGKRF-LLVLDDVWN---ENYNDWIDLSRPFQDGAPGSKIIITTRNA 343 (475)
Q Consensus 290 ~~l~~~l~~~l~~kr~-LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 343 (475)
.......++.+...+| |+|||.+-. ......+++...+.....+.-+|+|-|+.
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 1223334455544444 999999831 11223445555555555678999999985
No 288
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.94 E-value=0.036 Score=52.60 Aligned_cols=87 Identities=16% Similarity=0.114 Sum_probs=48.0
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCC-------CCCCChHHHHH
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGI-------VDHNDLNLLQW 294 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~-------~~~~~~~~l~~ 294 (475)
.+..++.|+|.+|+|||||+..+.+.. ..... .+.+ ..+..+..+ ...+...+... .-..+...+..
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l--~~~~~-~~VI-~gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl~a~mv~~ 175 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRL--KDSVP-CAVI-EGDQQTVND--AARIRATGTPAIQVNTGKGCHLDAQMIAD 175 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh--ccCCC-EEEE-CCCcCcHHH--HHHHHhcCCcEEEecCCCCCcCcHHHHHH
Confidence 567899999999999999999998742 22222 2222 222222221 11233322111 01233344555
Q ss_pred HHHHHhCCceEEEEEECCCC
Q 046770 295 KLKKQLFGKRFLLVLDDVWN 314 (475)
Q Consensus 295 ~l~~~l~~kr~LlVlDdv~~ 314 (475)
.+..+.....=++|++++.+
T Consensus 176 Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 176 AAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred HHHHHhhcCCcEEEEECCCC
Confidence 56655444446888999954
No 289
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.93 E-value=0.088 Score=46.25 Aligned_cols=60 Identities=15% Similarity=0.253 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhCCceEEEEEECCC-CCC-hhhHhHhhCcCC-CCCCCcEEEEecCChHHHHhcC
Q 046770 290 NLLQWKLKKQLFGKRFLLVLDDVW-NEN-YNDWIDLSRPFQ-DGAPGSKIIITTRNADAALIMG 350 (475)
Q Consensus 290 ~~l~~~l~~~l~~kr~LlVlDdv~-~~~-~~~~~~l~~~l~-~~~~gs~ilvTtR~~~v~~~~~ 350 (475)
++..-.+.+.+-+++-+|+=|+-- +.+ ...|+-+ ..|. -+..|..||++|.+......+.
T Consensus 142 EQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im-~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 142 EQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIM-RLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHH-HHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 333445677777888899988752 222 2345433 3332 3456999999999988776553
No 290
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.93 E-value=0.029 Score=61.10 Aligned_cols=110 Identities=11% Similarity=0.116 Sum_probs=55.3
Q ss_pred CceEEEEEECCCCC-ChhhHhHh----hCcCCCCCCCcEEEEecCChHHHHhcCCCce---eeCCCCCHHHHHHHHhhcc
Q 046770 302 GKRFLLVLDDVWNE-NYNDWIDL----SRPFQDGAPGSKIIITTRNADAALIMGTVQA---YPLKGLSNDDCMCLFTQHS 373 (475)
Q Consensus 302 ~kr~LlVlDdv~~~-~~~~~~~l----~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~---~~l~~L~~~~~~~lf~~~~ 373 (475)
..+-|++||+.... +......+ +..+. ..|+.+|+||....+......... ..+. ++. +... |..+.
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~-~~l~-p~Ykl 475 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FDE-ETLS-PTYKL 475 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcC-CCCc-eEEEE
Confidence 46889999998643 22333333 22332 357899999999877554321111 1110 111 1111 11111
Q ss_pred cCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHhcCCCChhHHHHHHh
Q 046770 374 LETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCLLHGKYDPSDWESVLN 424 (475)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~~~~~~w~~~l~ 424 (475)
..+.+. ...+-.|++++ |+|-.|.--|..+... ...++..++.
T Consensus 476 -~~G~~g-----~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~ 518 (771)
T TIGR01069 476 -LKGIPG-----ESYAFEIAQRY-GIPHFIIEQAKTFYGE-FKEEINVLIE 518 (771)
T ss_pred -CCCCCC-----CcHHHHHHHHh-CcCHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 111111 23455577665 8888888888777654 3334444443
No 291
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.92 E-value=0.048 Score=51.59 Aligned_cols=130 Identities=15% Similarity=0.056 Sum_probs=65.7
Q ss_pred hHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEE---ecCCCCHHHHHHHH--HH
Q 046770 203 EREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTY---VSQDFDIIRVTKSI--LR 277 (475)
Q Consensus 203 e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~---v~~~~~~~~~l~~i--l~ 277 (475)
..+.+...|.. . .+..-++|+|+.|.|||||.+.+..... .....+++. +.......++...+ +.
T Consensus 97 ~~~~~l~~l~~-~------~~~~~~~i~g~~g~GKttl~~~l~~~~~---~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~ 166 (270)
T TIGR02858 97 AADKLLPYLVR-N------NRVLNTLIISPPQCGKTTLLRDLARILS---TGISQLGLRGKKVGIVDERSEIAGCVNGVP 166 (270)
T ss_pred cHHHHHHHHHh-C------CCeeEEEEEcCCCCCHHHHHHHHhCccC---CCCceEEECCEEeecchhHHHHHHHhcccc
Confidence 34455555544 2 3346789999999999999999987432 122233331 11101112222111 01
Q ss_pred Hhhc--CCCCCCChHHHHHHHHHHh-CCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCChHHHHh
Q 046770 278 SVAM--GIVDHNDLNLLQWKLKKQL-FGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNADAALI 348 (475)
Q Consensus 278 ~l~~--~~~~~~~~~~l~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~ 348 (475)
+... .....++... ...+...+ ...+-++++|++.. .+.+..+...+. .|..+|+||....+...
T Consensus 167 q~~~~~r~~v~~~~~k-~~~~~~~i~~~~P~villDE~~~--~e~~~~l~~~~~---~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 167 QHDVGIRTDVLDGCPK-AEGMMMLIRSMSPDVIVVDEIGR--EEDVEALLEALH---AGVSIIATAHGRDVEDL 234 (270)
T ss_pred cccccccccccccchH-HHHHHHHHHhCCCCEEEEeCCCc--HHHHHHHHHHHh---CCCEEEEEechhHHHHH
Confidence 1100 0000011111 11122222 24678999999843 344555555542 47889999997666443
No 292
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.91 E-value=0.0069 Score=55.16 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=22.3
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
...+|+|+|++|+|||||++.+...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4479999999999999999999864
No 293
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.23 Score=45.42 Aligned_cols=130 Identities=15% Similarity=0.155 Sum_probs=70.3
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHh-C
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQL-F 301 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l-~ 301 (475)
+++-+.++|++|.|||-||+.|+++ .++.|+.|+.. ++....-++. ....+.|.-.. .
T Consensus 180 QPKGvlLygppgtGktLlaraVahh-------t~c~firvsgs--------elvqk~igeg------srmvrelfvmare 238 (404)
T KOG0728|consen 180 QPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGS--------ELVQKYIGEG------SRMVRELFVMARE 238 (404)
T ss_pred CCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechH--------HHHHHHhhhh------HHHHHHHHHHHHh
Confidence 3466889999999999999999984 34566777762 2222222110 11222222111 2
Q ss_pred CceEEEEEECCCCC-----------Chh---hHhHhhCcCC--CCCCCcEEEEecCChHHHH--hcCC---CceeeCCCC
Q 046770 302 GKRFLLVLDDVWNE-----------NYN---DWIDLSRPFQ--DGAPGSKIIITTRNADAAL--IMGT---VQAYPLKGL 360 (475)
Q Consensus 302 ~kr~LlVlDdv~~~-----------~~~---~~~~l~~~l~--~~~~gs~ilvTtR~~~v~~--~~~~---~~~~~l~~L 360 (475)
.-+-+|+.|++.+. +.+ ..-+++..+. ...+.-+||..|..-++.. .+.+ .+.++..+-
T Consensus 239 hapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p 318 (404)
T KOG0728|consen 239 HAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPP 318 (404)
T ss_pred cCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCC
Confidence 34678888887431 001 1122333332 1234567777776544432 1122 245777777
Q ss_pred CHHHHHHHHhhcc
Q 046770 361 SNDDCMCLFTQHS 373 (475)
Q Consensus 361 ~~~~~~~lf~~~~ 373 (475)
+++.-.++++-+.
T Consensus 319 ~e~ar~~ilkihs 331 (404)
T KOG0728|consen 319 NEEARLDILKIHS 331 (404)
T ss_pred CHHHHHHHHHHhh
Confidence 7777777776443
No 294
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.87 E-value=0.014 Score=53.90 Aligned_cols=59 Identities=24% Similarity=0.245 Sum_probs=36.8
Q ss_pred hHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCC
Q 046770 203 EREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFD 267 (475)
Q Consensus 203 e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~ 267 (475)
+..++++.+.... .+..+|+|+|++|.|||||...+....+.+++--.++-|.-+.+++
T Consensus 14 ~~~~ll~~l~~~~------g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~t 72 (266)
T PF03308_consen 14 EARELLKRLYPHT------GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFT 72 (266)
T ss_dssp HHHHHHHHHGGGT------T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC
T ss_pred HHHHHHHHHHhhc------CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCC
Confidence 4556777666522 4568999999999999999988876544333333455555555554
No 295
>PTZ00035 Rad51 protein; Provisional
Probab=95.87 E-value=0.056 Score=53.01 Aligned_cols=89 Identities=15% Similarity=0.095 Sum_probs=52.7
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcCcccc---c-CcCeEEEEEecCCCCHHHHHHHHHHHhhcCCC---------CCCCh
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYNDSRVQ---C-HFDLKAWTYVSQDFDIIRVTKSILRSVAMGIV---------DHNDL 289 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---~-~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~---------~~~~~ 289 (475)
.-.++.|+|++|+|||+|+..++-..... . .=..++|++....|++.++ .++.+.++.... ...+.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~~ 195 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYNH 195 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCCH
Confidence 34789999999999999999887532211 1 1134679998887877764 344444332210 12233
Q ss_pred HHHHHHH---HHHh-CCceEEEEEECC
Q 046770 290 NLLQWKL---KKQL-FGKRFLLVLDDV 312 (475)
Q Consensus 290 ~~l~~~l---~~~l-~~kr~LlVlDdv 312 (475)
+.+...+ ...+ .++--|||+|.+
T Consensus 196 e~~~~~l~~~~~~l~~~~~~lvVIDSi 222 (337)
T PTZ00035 196 EHQMQLLSQAAAKMAEERFALLIVDSA 222 (337)
T ss_pred HHHHHHHHHHHHHhhccCccEEEEECc
Confidence 3333333 2233 344558999998
No 296
>PHA00729 NTP-binding motif containing protein
Probab=95.87 E-value=0.011 Score=53.82 Aligned_cols=25 Identities=44% Similarity=0.482 Sum_probs=21.5
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
+...|.|+|.+|+||||||..+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3456889999999999999999873
No 297
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.86 E-value=0.026 Score=51.47 Aligned_cols=81 Identities=20% Similarity=0.341 Sum_probs=49.8
Q ss_pred EEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCC-CHHHHHHHHHHHhhcCC-----CCCCC-h-H-------
Q 046770 226 VVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDF-DIIRVTKSILRSVAMGI-----VDHND-L-N------- 290 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~l~~il~~l~~~~-----~~~~~-~-~------- 290 (475)
-++|.|.+|+|||+|+..+.++.. -+..+++.+.+.. .+.+++..+...-.... ...++ . .
T Consensus 17 r~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~~ 92 (215)
T PF00006_consen 17 RIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPYT 92 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHHH
T ss_pred EEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhcc
Confidence 578999999999999999988542 3445888887654 44555555533211111 01111 1 1
Q ss_pred --HHHHHHHHHhCCceEEEEEECC
Q 046770 291 --LLQWKLKKQLFGKRFLLVLDDV 312 (475)
Q Consensus 291 --~l~~~l~~~l~~kr~LlVlDdv 312 (475)
...+.++. +++..|+++||+
T Consensus 93 a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 93 ALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHH--TTSEEEEEEETH
T ss_pred chhhhHHHhh--cCCceeehhhhh
Confidence 12223333 799999999998
No 298
>PRK06762 hypothetical protein; Provisional
Probab=95.86 E-value=0.007 Score=52.91 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=21.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.+|.|+|++|+||||+|+.+.+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999874
No 299
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.84 E-value=0.0075 Score=53.78 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.7
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHc
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
+.++|.|+|++|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999986
No 300
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.83 E-value=0.013 Score=51.79 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=19.9
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 046770 226 VVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.|.|.|++|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999885
No 301
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.83 E-value=0.013 Score=53.00 Aligned_cols=119 Identities=13% Similarity=0.100 Sum_probs=57.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCC---hHHHHHHHHHH--
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHND---LNLLQWKLKKQ-- 299 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~---~~~l~~~l~~~-- 299 (475)
.++.|+|+.|.||||+.+.+....-. .+ +-.+|.... ....+...++..+......... ...-...+...
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~~l-a~--~G~~vpa~~--~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il~ 104 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLAIM-AQ--IGCFVPAEY--ATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYILD 104 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHH-HH--cCCCcchhh--cCccChhheeEecCCccccchhhhHHHHHHHHHHHHHH
Confidence 68999999999999999887542100 00 001111100 0001122222222221100011 11111112222
Q ss_pred hCCceEEEEEECCCCCC-hhh----HhHhhCcCCCCCCCcEEEEecCChHHHHhcC
Q 046770 300 LFGKRFLLVLDDVWNEN-YND----WIDLSRPFQDGAPGSKIIITTRNADAALIMG 350 (475)
Q Consensus 300 l~~kr~LlVlDdv~~~~-~~~----~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~ 350 (475)
+..++-|+++|+..... ..+ ...+...+.. .++.+|++|...+.+..+.
T Consensus 105 ~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 105 YADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 23567899999984421 212 1123333332 3789999999988877654
No 302
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.82 E-value=0.04 Score=55.77 Aligned_cols=87 Identities=17% Similarity=0.166 Sum_probs=45.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCH--HHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDI--IRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFG 302 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~--~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 302 (475)
+++.++|++|+||||++..++........-..+..++... +.. .+.+....+.++.......+...+...+.+. .
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~-~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~- 298 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT-YRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-R- 298 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc-cHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-C-
Confidence 5899999999999998888765322011122345555432 221 1222222333332222233344555555443 2
Q ss_pred ceEEEEEECCCC
Q 046770 303 KRFLLVLDDVWN 314 (475)
Q Consensus 303 kr~LlVlDdv~~ 314 (475)
..=+|++|....
T Consensus 299 ~~DlVlIDt~G~ 310 (424)
T PRK05703 299 DCDVILIDTAGR 310 (424)
T ss_pred CCCEEEEeCCCC
Confidence 245788897744
No 303
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.78 E-value=0.057 Score=54.48 Aligned_cols=85 Identities=16% Similarity=0.198 Sum_probs=48.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCC------CCCCChH-----HHH
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGI------VDHNDLN-----LLQ 293 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~------~~~~~~~-----~l~ 293 (475)
..++|+|..|+|||||++.+..... ....+++..-....++.++....+....... .+..... ...
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a 242 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTA 242 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 4789999999999999998886322 2224444433344455555555554432111 1111111 111
Q ss_pred HHHHHHh--CCceEEEEEECC
Q 046770 294 WKLKKQL--FGKRFLLVLDDV 312 (475)
Q Consensus 294 ~~l~~~l--~~kr~LlVlDdv 312 (475)
-.+.+++ +++.+|+++||+
T Consensus 243 ~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 243 TAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHcCCCEEEeccch
Confidence 1233333 589999999998
No 304
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.75 E-value=0.024 Score=56.96 Aligned_cols=22 Identities=45% Similarity=0.703 Sum_probs=19.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+++|+|++|+||||||+.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 4799999999999999999854
No 305
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.74 E-value=0.027 Score=58.81 Aligned_cols=132 Identities=18% Similarity=0.054 Sum_probs=69.8
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHH
Q 046770 196 KVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSI 275 (475)
Q Consensus 196 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~i 275 (475)
.++|....+.++++.+..... .+ .-|.|+|..|+||++||+.+..... + .-..-+.+++....+ +.+..
T Consensus 205 ~~ig~s~~~~~~~~~~~~~A~-----~~-~pvlI~GE~GtGK~~lA~aiH~~s~-r-~~~pfv~inca~~~~--~~~e~- 273 (520)
T PRK10820 205 QIVAVSPKMRQVVEQARKLAM-----LD-APLLITGDTGTGKDLLAYACHLRSP-R-GKKPFLALNCASIPD--DVVES- 273 (520)
T ss_pred ceeECCHHHHHHHHHHHHHhC-----CC-CCEEEECCCCccHHHHHHHHHHhCC-C-CCCCeEEeccccCCH--HHHHH-
Confidence 588988888888877654221 11 3477999999999999999865321 1 111223455554332 22222
Q ss_pred HHHhhcCCCCCCC--hHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCCC-----------CCcEEEEecCC
Q 046770 276 LRSVAMGIVDHND--LNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDGA-----------PGSKIIITTRN 342 (475)
Q Consensus 276 l~~l~~~~~~~~~--~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~ 342 (475)
.+.+...+.-. .......+. ....=.|+||+++..+......+...+..+. ...+||.||..
T Consensus 274 --elFG~~~~~~~~~~~~~~g~~e---~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~ 348 (520)
T PRK10820 274 --ELFGHAPGAYPNALEGKKGFFE---QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQK 348 (520)
T ss_pred --HhcCCCCCCcCCcccCCCChhh---hcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCC
Confidence 22221111000 000000011 1122357899998776666666655554321 23488888765
Q ss_pred h
Q 046770 343 A 343 (475)
Q Consensus 343 ~ 343 (475)
.
T Consensus 349 ~ 349 (520)
T PRK10820 349 N 349 (520)
T ss_pred C
Confidence 4
No 306
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.74 E-value=0.014 Score=54.70 Aligned_cols=67 Identities=22% Similarity=0.216 Sum_probs=46.5
Q ss_pred HHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHH
Q 046770 205 EEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILR 277 (475)
Q Consensus 205 ~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~ 277 (475)
.+|+..+.. .. ++..+|+|+|.||+|||||...+......+.|--.++-|.-|.+++--.++-+=++
T Consensus 38 ~~ll~~l~p-~t-----G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiR 104 (323)
T COG1703 38 RELLRALYP-RT-----GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIR 104 (323)
T ss_pred HHHHHHHhh-cC-----CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhh
Confidence 456666654 22 56679999999999999999988776555555556667777777765555444333
No 307
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=95.73 E-value=0.054 Score=59.17 Aligned_cols=178 Identities=17% Similarity=0.137 Sum_probs=85.6
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcCcc--------------cccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYNDSR--------------VQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHND 288 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~~~--------------~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~ 288 (475)
+.+++.|+|+.+.||||+.+.+.-..- .-..|+ .++..++...++..-+..+...
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~-~i~~~ig~~~si~~~lStfS~~---------- 394 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFK-EIFADIGDEQSIEQSLSTFSGH---------- 394 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccc-eEEEecCCccchhhchhHHHHH----------
Confidence 347899999999999999988743200 011122 2233333332222211111111
Q ss_pred hHHHHHHHHHHhCCceEEEEEECCCCC-ChhhHhHh----hCcCCCCCCCcEEEEecCChHHHHhcCCCce-eeCCCCCH
Q 046770 289 LNLLQWKLKKQLFGKRFLLVLDDVWNE-NYNDWIDL----SRPFQDGAPGSKIIITTRNADAALIMGTVQA-YPLKGLSN 362 (475)
Q Consensus 289 ~~~l~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l----~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~-~~l~~L~~ 362 (475)
.......+... ..+-|++||+.... +......+ +..+. ..|+.+|+||...++......... ......-+
T Consensus 395 m~~~~~Il~~~--~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~d 470 (782)
T PRK00409 395 MTNIVRILEKA--DKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVEFD 470 (782)
T ss_pred HHHHHHHHHhC--CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEEEe
Confidence 11122222222 46789999998643 22222233 22232 247899999999877765432211 11100001
Q ss_pred HHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHhcCCCChhHHHHHHh
Q 046770 363 DDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCLLHGKYDPSDWESVLN 424 (475)
Q Consensus 363 ~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~~~~~~w~~~l~ 424 (475)
.+... ..+-+..+.+. ...|-.|++++ |+|-.+..-|..+... ....+..++.
T Consensus 471 ~~~l~--~~Ykl~~G~~g-----~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~ 523 (782)
T PRK00409 471 EETLR--PTYRLLIGIPG-----KSNAFEIAKRL-GLPENIIEEAKKLIGE-DKEKLNELIA 523 (782)
T ss_pred cCcCc--EEEEEeeCCCC-----CcHHHHHHHHh-CcCHHHHHHHHHHHhh-hhhHHHHHHH
Confidence 11111 11111111111 23455577766 8888888888777655 3334444443
No 308
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.72 E-value=0.016 Score=54.84 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=18.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
+.|.|+|.+|+||||+|+.+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 57899999999999999999874
No 309
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.72 E-value=0.043 Score=51.82 Aligned_cols=41 Identities=17% Similarity=0.249 Sum_probs=29.6
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQD 265 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~ 265 (475)
.-+++.|.|++|+|||++|.+++.... + .=..+++++...+
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a-~-~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA-S-RGNPVLFVTVESP 75 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-h-CCCcEEEEEecCC
Confidence 347899999999999999999765321 1 2245777877643
No 310
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.68 E-value=0.02 Score=50.75 Aligned_cols=22 Identities=50% Similarity=0.647 Sum_probs=20.0
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 046770 226 VVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 311
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.038 Score=50.78 Aligned_cols=69 Identities=22% Similarity=0.200 Sum_probs=41.6
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFG 302 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 302 (475)
..+-|.++|++|.|||-+|+.|+| +....| +.|-. .++++..-++ -...++.|.+....
T Consensus 210 ppkgvllygppgtgktl~aravan--rtdacf-----irvig--------selvqkyvge------garmvrelf~mart 268 (435)
T KOG0729|consen 210 PPKGVLLYGPPGTGKTLCARAVAN--RTDACF-----IRVIG--------SELVQKYVGE------GARMVRELFEMART 268 (435)
T ss_pred CCCceEEeCCCCCchhHHHHHHhc--ccCceE-----Eeehh--------HHHHHHHhhh------hHHHHHHHHHHhcc
Confidence 345688999999999999999999 444444 22211 2222222111 12334444444444
Q ss_pred -ceEEEEEECC
Q 046770 303 -KRFLLVLDDV 312 (475)
Q Consensus 303 -kr~LlVlDdv 312 (475)
|-++|+||.+
T Consensus 269 kkaciiffdei 279 (435)
T KOG0729|consen 269 KKACIIFFDEI 279 (435)
T ss_pred cceEEEEeecc
Confidence 5688888988
No 312
>PRK03839 putative kinase; Provisional
Probab=95.65 E-value=0.0085 Score=53.18 Aligned_cols=22 Identities=36% Similarity=0.723 Sum_probs=20.1
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 046770 226 VVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.|.|+|++|+||||+++.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999984
No 313
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.11 Score=47.16 Aligned_cols=59 Identities=12% Similarity=0.077 Sum_probs=34.6
Q ss_pred HHHHhCCceEEEEEECCCCC-ChhhHhHhhCcCC-CCCCCcEEEEecCChHHHHhcCCCce
Q 046770 296 LKKQLFGKRFLLVLDDVWNE-NYNDWIDLSRPFQ-DGAPGSKIIITTRNADAALIMGTVQA 354 (475)
Q Consensus 296 l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~-~~~~gs~ilvTtR~~~v~~~~~~~~~ 354 (475)
+-+.+--++=|.|||..++- +.+....+...+. -...++-+|+.|....+.....+..+
T Consensus 155 ilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~v 215 (251)
T COG0396 155 ILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKV 215 (251)
T ss_pred HHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEE
Confidence 33444456779999998653 2333333322222 12347788888888888887654443
No 314
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.60 E-value=0.048 Score=49.26 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=21.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.+++|+|..|.|||||.+.+...
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999875
No 315
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.57 E-value=0.038 Score=47.72 Aligned_cols=116 Identities=17% Similarity=0.171 Sum_probs=60.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCC--CHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDF--DIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFG 302 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~--~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 302 (475)
.+++|+|..|.|||||.+.+..... .....+++...... .... ....+..-. .-..-+...-.+...+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~~~~~~~~~~~~----~~~~i~~~~-qlS~G~~~r~~l~~~l~~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDIAKLPLEE----LRRRIGYVP-QLSGGQRQRVALARALLL 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccCCHHH----HHhceEEEe-eCCHHHHHHHHHHHHHhc
Confidence 5899999999999999999987432 23344444322111 1111 111111100 011112222235555566
Q ss_pred ceEEEEEECCCCC-ChhhHhHhhCcCCC-CCCCcEEEEecCChHHHHh
Q 046770 303 KRFLLVLDDVWNE-NYNDWIDLSRPFQD-GAPGSKIIITTRNADAALI 348 (475)
Q Consensus 303 kr~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~ilvTtR~~~v~~~ 348 (475)
.+-++++|+.-.. +......+...+.. ...+..+|++|........
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 6789999998432 23333333333321 1125678888887665544
No 316
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.56 E-value=0.1 Score=46.84 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+++|+|+.|.|||||++.++.
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999986
No 317
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.55 E-value=0.012 Score=48.36 Aligned_cols=27 Identities=37% Similarity=0.546 Sum_probs=18.3
Q ss_pred EEEEccCCCcHHHHHHHHHcCcccccCcC
Q 046770 227 VSIIGMGGLGKTTLAQLVYNDSRVQCHFD 255 (475)
Q Consensus 227 v~I~G~gGiGKTtLA~~v~~~~~~~~~F~ 255 (475)
|.|+|.+|+||||+|+.++. .....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 67999999999999999998 4455553
No 318
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.55 E-value=0.11 Score=55.75 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
-.++.++|+.|+||||++..++..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhh
Confidence 379999999999999998888764
No 319
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.55 E-value=0.03 Score=55.65 Aligned_cols=53 Identities=17% Similarity=0.268 Sum_probs=36.2
Q ss_pred ccccccchhHHHHHHHHhcC------CCCCCCCCccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 195 AKVYGRSKEREEIVELLLKE------DGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~------~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..++|.++.++.+.-.+... ..........+-|.++|++|+|||++|+.+...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~ 70 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL 70 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45788888888876665531 000000123467889999999999999999874
No 320
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.54 E-value=0.068 Score=53.06 Aligned_cols=82 Identities=17% Similarity=0.088 Sum_probs=48.2
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCC-----CCCChHHHHHHHHH
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIV-----DHNDLNLLQWKLKK 298 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~-----~~~~~~~l~~~l~~ 298 (475)
-.++.|.|.+|+|||||+.+++... ...-..++|++..+. ...+. .-...++.... ...+.+.+...+.
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~--a~~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~- 155 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARL--AKRGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASIE- 155 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHH-
Confidence 3689999999999999999988643 222245677766543 33322 22233332211 1233444444443
Q ss_pred HhCCceEEEEEECCC
Q 046770 299 QLFGKRFLLVLDDVW 313 (475)
Q Consensus 299 ~l~~kr~LlVlDdv~ 313 (475)
..+.-+||+|.+.
T Consensus 156 --~~~~~lVVIDSIq 168 (372)
T cd01121 156 --ELKPDLVIIDSIQ 168 (372)
T ss_pred --hcCCcEEEEcchH
Confidence 2456789999984
No 321
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.53 E-value=0.021 Score=49.20 Aligned_cols=36 Identities=28% Similarity=0.492 Sum_probs=30.1
Q ss_pred hhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCc
Q 046770 202 KEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDS 248 (475)
Q Consensus 202 ~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 248 (475)
..+++|.++|.+ +++.++|..|+|||||...+..+.
T Consensus 24 ~g~~~l~~~l~~-----------k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKG-----------KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTT-----------SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcC-----------CEEEEECCCCCCHHHHHHHHHhhc
Confidence 456778888744 688999999999999999999853
No 322
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=95.52 E-value=0.036 Score=52.01 Aligned_cols=53 Identities=13% Similarity=0.284 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-cccchHHHHHHHHHHHhhhhhhhhhhhH
Q 046770 48 IHDYLVQWKKTLEKIKAVIEDAEEK-QTREESVKMWLYELQNLAYDVEDLLGEF 100 (475)
Q Consensus 48 v~~~~~~l~~~l~~~~~~l~~a~~~-~~~~~~v~~Wl~~lrd~ayd~eD~lD~~ 100 (475)
++.+++-++.+++.+|.||+..... ....+..+.++.++-..||++|.++|-+
T Consensus 319 lKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaC 372 (402)
T PF12061_consen 319 LKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDAC 372 (402)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehh
Confidence 5789999999999999999987443 3333458999999999999999999986
No 323
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.51 E-value=0.038 Score=53.92 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=18.8
Q ss_pred EEEEccCCCcHHHHHHHHHcC
Q 046770 227 VSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 227 v~I~G~gGiGKTtLA~~v~~~ 247 (475)
+.+.|++|.||||+++.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999998864
No 324
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.51 E-value=0.016 Score=55.97 Aligned_cols=51 Identities=24% Similarity=0.378 Sum_probs=42.7
Q ss_pred cccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHc
Q 046770 194 EAKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 194 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
...|+|-++.+++|++.|.....+.. ..-+|+.++||.|.|||||+..+-+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~--~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLE--ERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccC--ccceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999976443333 5668999999999999999998876
No 325
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.51 E-value=0.04 Score=59.34 Aligned_cols=84 Identities=18% Similarity=0.111 Sum_probs=55.8
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCC-----CCCChHHHHHHHH
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIV-----DHNDLNLLQWKLK 297 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~-----~~~~~~~l~~~l~ 297 (475)
.-+++-|.|++|+|||||+.+++... ...=..++|+...+.+++. .++.++.... .....+.....+.
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a--~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANA--QAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 34788999999999999998866532 1222457899888877743 4555544321 2334455666666
Q ss_pred HHhC-CceEEEEEECCC
Q 046770 298 KQLF-GKRFLLVLDDVW 313 (475)
Q Consensus 298 ~~l~-~kr~LlVlDdv~ 313 (475)
..+. ++.-|||+|.+-
T Consensus 132 ~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 132 MLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHhhcCCCeEEEEcchh
Confidence 6664 456689999984
No 326
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.50 E-value=0.0086 Score=54.06 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=19.8
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 046770 226 VVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
+|+|.|++|+|||||++.+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998763
No 327
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.50 E-value=0.045 Score=47.96 Aligned_cols=79 Identities=15% Similarity=0.099 Sum_probs=44.6
Q ss_pred EEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCC--ce
Q 046770 227 VSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFG--KR 304 (475)
Q Consensus 227 v~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~--kr 304 (475)
+.|.|.+|+|||++|.++... .....+++...+.++.. ....|....... +......+....|.+.+.. +.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R-~~~w~t~E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIARHRKRR-PAHWRTIETPRDLVSALKELDPG 74 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHHHHHhC-CCCceEeecHHHHHHHHHhcCCC
Confidence 679999999999999998763 22356777777777643 333333322222 2222222222233333311 23
Q ss_pred EEEEEECC
Q 046770 305 FLLVLDDV 312 (475)
Q Consensus 305 ~LlVlDdv 312 (475)
-.+++|.+
T Consensus 75 ~~VLIDcl 82 (169)
T cd00544 75 DVVLIDCL 82 (169)
T ss_pred CEEEEEcH
Confidence 37999997
No 328
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.48 E-value=0.048 Score=48.35 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
+.|.++|.+|+||||+|+++...
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~ 24 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKE 24 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHH
Confidence 46889999999999999998763
No 329
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.48 E-value=0.0077 Score=48.45 Aligned_cols=21 Identities=43% Similarity=0.621 Sum_probs=18.7
Q ss_pred EEEEccCCCcHHHHHHHHHcC
Q 046770 227 VSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 227 v~I~G~gGiGKTtLA~~v~~~ 247 (475)
|.|+|++|+|||+||+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998874
No 330
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.48 E-value=0.028 Score=53.12 Aligned_cols=42 Identities=24% Similarity=0.108 Sum_probs=34.6
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDF 266 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~ 266 (475)
.-+++.|+|.+|+|||+++.++.. ........++||+..+..
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~~ 63 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEESP 63 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCCH
Confidence 347999999999999999999987 344557889999888753
No 331
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.47 E-value=0.011 Score=52.33 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.++.|+|++|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998774
No 332
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=95.46 E-value=0.042 Score=57.11 Aligned_cols=132 Identities=18% Similarity=0.086 Sum_probs=71.1
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCc-ccccCcCeEEEEEecCCCCHHHHHHH
Q 046770 196 KVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDS-RVQCHFDLKAWTYVSQDFDIIRVTKS 274 (475)
Q Consensus 196 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~~~F~~~~wv~v~~~~~~~~~l~~ 274 (475)
+++|....++++.+.+..... .-.-|.|.|..|+||+++|+.+++.. +....| +-+++.... ...+..
T Consensus 213 ~iiG~S~~m~~~~~~i~~~A~------~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pf---v~inC~~l~--e~lles 281 (526)
T TIGR02329 213 DLLGASAPMEQVRALVRLYAR------SDATVLILGESGTGKELVAQAIHQLSGRRDFPF---VAINCGAIA--ESLLEA 281 (526)
T ss_pred heeeCCHHHHHHHHHHHHHhC------CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCE---EEeccccCC--hhHHHH
Confidence 589999888888887754221 22467899999999999999998743 112222 233443322 122222
Q ss_pred HHHHhhcCCCCCCChHH--HHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCCC-----------CCcEEEEecC
Q 046770 275 ILRSVAMGIVDHNDLNL--LQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDGA-----------PGSKIIITTR 341 (475)
Q Consensus 275 il~~l~~~~~~~~~~~~--l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR 341 (475)
.+.+...+.-.... ...-+.+. ...=.|+||++..........++..+.... ...+||.||.
T Consensus 282 ---eLFG~~~gaftga~~~~~~Gl~e~--A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~ 356 (526)
T TIGR02329 282 ---ELFGYEEGAFTGARRGGRTGLIEA--AHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATH 356 (526)
T ss_pred ---HhcCCcccccccccccccccchhh--cCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccC
Confidence 22222111000000 00000011 122358999998777666666666654321 1347888876
Q ss_pred Ch
Q 046770 342 NA 343 (475)
Q Consensus 342 ~~ 343 (475)
..
T Consensus 357 ~~ 358 (526)
T TIGR02329 357 CA 358 (526)
T ss_pred CC
Confidence 53
No 333
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.46 E-value=0.064 Score=50.95 Aligned_cols=90 Identities=16% Similarity=0.150 Sum_probs=46.2
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCH--HHHHHHHHHHhhcCC---CCCCCh-HHHHHH
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDI--IRVTKSILRSVAMGI---VDHNDL-NLLQWK 295 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~--~~~l~~il~~l~~~~---~~~~~~-~~l~~~ 295 (475)
.+.+++.++|++|+||||++..++.... ..-..+..++.. .+.. .+-+....+..+... ....+. ......
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~--~~g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLK--KQGKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 3457999999999999999988876432 211234444433 2322 222333333333221 111222 222334
Q ss_pred HHHHhCCceEEEEEECCCC
Q 046770 296 LKKQLFGKRFLLVLDDVWN 314 (475)
Q Consensus 296 l~~~l~~kr~LlVlDdv~~ 314 (475)
+........=++++|-...
T Consensus 147 l~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHHCCCCEEEEeCCCC
Confidence 4444334445788888754
No 334
>PRK15453 phosphoribulokinase; Provisional
Probab=95.45 E-value=0.076 Score=50.08 Aligned_cols=79 Identities=13% Similarity=0.097 Sum_probs=43.5
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHcCcccccCcC-eEEEEEecCC--CCHHHHHHHHHH--Hhh--cCC--CCCCChHHH
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFD-LKAWTYVSQD--FDIIRVTKSILR--SVA--MGI--VDHNDLNLL 292 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~v~~~--~~~~~~l~~il~--~l~--~~~--~~~~~~~~l 292 (475)
.+..+|+|.|.+|+||||+|+.+..... +.. ..+.++...- ++-.+.-..+.. .-+ -.. ++..+.+.+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~---~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL 79 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFR---RENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDEL 79 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh---hcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHH
Confidence 3457999999999999999998875221 111 1233333221 222222111111 111 112 456677888
Q ss_pred HHHHHHHhCCc
Q 046770 293 QWKLKKQLFGK 303 (475)
Q Consensus 293 ~~~l~~~l~~k 303 (475)
...++.+.+++
T Consensus 80 ~~~l~~l~~~~ 90 (290)
T PRK15453 80 EQLFREYGETG 90 (290)
T ss_pred HHHHHHHhcCC
Confidence 88888776543
No 335
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.43 E-value=0.014 Score=53.88 Aligned_cols=21 Identities=29% Similarity=0.634 Sum_probs=19.3
Q ss_pred EEEEccCCCcHHHHHHHHHcC
Q 046770 227 VSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 227 v~I~G~gGiGKTtLA~~v~~~ 247 (475)
|.|+|++|+||||+|+.+.+.
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999999873
No 336
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.43 E-value=0.06 Score=50.62 Aligned_cols=87 Identities=16% Similarity=0.188 Sum_probs=53.3
Q ss_pred EEEEEccCCCcHHHHHHHHHcCccc--ccCcCeEEEEEecCCC-CHHHHHHHHHHHhhcCC-------CCCCChHH----
Q 046770 226 VVSIIGMGGLGKTTLAQLVYNDSRV--QCHFDLKAWTYVSQDF-DIIRVTKSILRSVAMGI-------VDHNDLNL---- 291 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~~~~--~~~F~~~~wv~v~~~~-~~~~~l~~il~~l~~~~-------~~~~~~~~---- 291 (475)
-++|.|..|+|||+|+..+.++... +.+-+.++++-+.+.. ...+++..+...-.... .+......
T Consensus 71 R~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a~ 150 (276)
T cd01135 71 KIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIITP 150 (276)
T ss_pred EEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHHH
Confidence 5789999999999999998875431 1234678888887765 44556655554311111 01111111
Q ss_pred -HHHHHHHHh---CCceEEEEEECC
Q 046770 292 -LQWKLKKQL---FGKRFLLVLDDV 312 (475)
Q Consensus 292 -l~~~l~~~l---~~kr~LlVlDdv 312 (475)
..-.+.+++ +++++|+++||+
T Consensus 151 ~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 151 RMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHhccCCeEEEEEcCh
Confidence 112244444 378999999998
No 337
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.42 E-value=0.062 Score=53.97 Aligned_cols=84 Identities=17% Similarity=0.220 Sum_probs=50.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCC-HHHHHHHHHHHhhcCC-------CCCCChHH-----
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFD-IIRVTKSILRSVAMGI-------VDHNDLNL----- 291 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~~l~~il~~l~~~~-------~~~~~~~~----- 291 (475)
..++|+|..|+|||||++.+.+.. ..+..+.+-+.+... +.+++..++..-.... .+......
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~ 238 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCE 238 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHH
Confidence 468999999999999999998732 224556666666543 3455555544321111 01111111
Q ss_pred HHHHHHHHh--CCceEEEEEECC
Q 046770 292 LQWKLKKQL--FGKRFLLVLDDV 312 (475)
Q Consensus 292 l~~~l~~~l--~~kr~LlVlDdv 312 (475)
..-.+.+++ +|+++||++||+
T Consensus 239 ~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 239 TATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCh
Confidence 111233444 689999999998
No 338
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.42 E-value=0.085 Score=47.19 Aligned_cols=42 Identities=24% Similarity=0.187 Sum_probs=27.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCc--------CeEEEEEecCCC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHF--------DLKAWTYVSQDF 266 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F--------~~~~wv~v~~~~ 266 (475)
.++.|.|++|+||||++..+.........| ..++|++.....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 478899999999999998887643322222 257777766653
No 339
>PRK04040 adenylate kinase; Provisional
Probab=95.41 E-value=0.012 Score=52.49 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=21.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.+|.|+|++|+||||+++.+.+.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 58999999999999999999873
No 340
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.41 E-value=0.011 Score=52.77 Aligned_cols=25 Identities=44% Similarity=0.473 Sum_probs=22.5
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcCc
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYNDS 248 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~~ 248 (475)
..+|+|-||-|+||||||+.+.++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4689999999999999999999854
No 341
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=0.067 Score=51.96 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=22.7
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcCc
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYNDS 248 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 248 (475)
..+-|.++|++|.|||-||+.|+...
T Consensus 244 PWkgvLm~GPPGTGKTlLAKAvATEc 269 (491)
T KOG0738|consen 244 PWKGVLMVGPPGTGKTLLAKAVATEC 269 (491)
T ss_pred ccceeeeeCCCCCcHHHHHHHHHHhh
Confidence 34678999999999999999999853
No 342
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.39 E-value=0.024 Score=46.48 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=22.9
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.++-|++.+|.+|+|||.+++.++++
T Consensus 51 ~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 51 RKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred CCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 67789999999999999988887764
No 343
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.38 E-value=0.01 Score=52.82 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=19.8
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 046770 226 VVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
+|.|+|++|+||||+|+.+...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999873
No 344
>PRK04328 hypothetical protein; Provisional
Probab=95.37 E-value=0.051 Score=50.96 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=29.7
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQD 265 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~ 265 (475)
-+++.|.|.+|+|||+|+.++.... . ..-+..+|++..+.
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~-~-~~ge~~lyis~ee~ 62 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGVYVALEEH 62 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH-H-hcCCcEEEEEeeCC
Confidence 3789999999999999999876532 1 22355788887664
No 345
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=95.37 E-value=0.053 Score=56.42 Aligned_cols=47 Identities=26% Similarity=0.324 Sum_probs=36.7
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.+++|....++++.+.+..... .-.-|.|.|..|+||+++|+.+++.
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A~------s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYAR------SSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHhC------CCCcEEEECCCCCCHHHHHHHHHHh
Confidence 3589999888888887754221 2246789999999999999999874
No 346
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.36 E-value=0.12 Score=47.44 Aligned_cols=112 Identities=14% Similarity=0.065 Sum_probs=57.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCccc--ccCc----------CeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHH
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRV--QCHF----------DLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLL 292 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~--~~~F----------~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l 292 (475)
+++.|.|+.|.||||+.+.+....-. .+.| -..++.......++..-..... .+..++
T Consensus 32 ~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~----------~e~~~~ 101 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFM----------VELSET 101 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHH----------HHHHHH
Confidence 57899999999999999888652100 0111 1122222222222111100010 011222
Q ss_pred HHHHHHHhCCceEEEEEECCCCCC--hh--h-HhHhhCcCCCCCCCcEEEEecCChHHHHhc
Q 046770 293 QWKLKKQLFGKRFLLVLDDVWNEN--YN--D-WIDLSRPFQDGAPGSKIIITTRNADAALIM 349 (475)
Q Consensus 293 ~~~l~~~l~~kr~LlVlDdv~~~~--~~--~-~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~ 349 (475)
...++. ..++-|++||+..... .+ . -..+...+... .++.+|++|...+++...
T Consensus 102 ~~il~~--~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 102 SHILSN--CTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred HHHHHh--CCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 222222 2568999999984321 11 1 11233333322 578999999998877654
No 347
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.36 E-value=0.048 Score=55.37 Aligned_cols=87 Identities=16% Similarity=0.172 Sum_probs=53.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCC-CHHHHHHHHHHHhhcCC-------CCCCChH-----H
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDF-DIIRVTKSILRSVAMGI-------VDHNDLN-----L 291 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~l~~il~~l~~~~-------~~~~~~~-----~ 291 (475)
.-++|.|.+|+|||||+..+.++... .+-+.++++-+.+.. .+.+++..++..-.... .+..... .
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~ 222 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVL 222 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHH
Confidence 35899999999999999888875432 256778888777654 34555555554311111 0111111 1
Q ss_pred HHHHHHHHh---CCceEEEEEECC
Q 046770 292 LQWKLKKQL---FGKRFLLVLDDV 312 (475)
Q Consensus 292 l~~~l~~~l---~~kr~LlVlDdv 312 (475)
..-.+.+++ +++++|+++||+
T Consensus 223 ~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 223 TGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHhcCCceEEEeccc
Confidence 122344555 389999999999
No 348
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.13 Score=53.61 Aligned_cols=182 Identities=16% Similarity=0.141 Sum_probs=90.0
Q ss_pred cccccccchhH---HHHHHHHhcCCCC---CCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCC
Q 046770 194 EAKVYGRSKER---EEIVELLLKEDGT---SHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFD 267 (475)
Q Consensus 194 ~~~~vGR~~e~---~~l~~~L~~~~~~---~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~ 267 (475)
-.++-|.++.+ .++++.|.+...- +. .-++-|.++|++|.|||.||+.++....+- | .+.|.
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGa--kiPkGvlLvGpPGTGKTLLAkAvAgEA~VP--F-----f~iSG--- 216 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGA--KIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--F-----FSISG--- 216 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhccc--ccccceeEecCCCCCcHHHHHHHhcccCCC--c-----eeccc---
Confidence 34677877655 5556666552110 11 335668899999999999999999965443 2 11121
Q ss_pred HHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCC----------ChhhHhH----hhCcCCCCC--
Q 046770 268 IIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNE----------NYNDWID----LSRPFQDGA-- 331 (475)
Q Consensus 268 ~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~----------~~~~~~~----l~~~l~~~~-- 331 (475)
.+.++.+-+- .-....+...+..+.-+++|++|.+..- ..+++++ ++.......
T Consensus 217 -----S~FVemfVGv-----GAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~ 286 (596)
T COG0465 217 -----SDFVEMFVGV-----GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN 286 (596)
T ss_pred -----hhhhhhhcCC-----CcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC
Confidence 1111221111 1122223333444455799999987321 1233444 333333222
Q ss_pred CCcEEEEecCChHHHH--hcCC---CceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHH
Q 046770 332 PGSKIIITTRNADAAL--IMGT---VQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLA 402 (475)
Q Consensus 332 ~gs~ilvTtR~~~v~~--~~~~---~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLa 402 (475)
.|--|+..|..++|.. .+.. .+.+.++.-+-..-.++++.++-...- ...-++.. |++.+-|.-.|
T Consensus 287 ~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l-~~~Vdl~~----iAr~tpGfsGA 357 (596)
T COG0465 287 EGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPL-AEDVDLKK----IARGTPGFSGA 357 (596)
T ss_pred CceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCC-CCcCCHHH----HhhhCCCcccc
Confidence 3444555555555542 1222 234555555555566666655432211 11112222 77777777543
No 349
>PRK08149 ATP synthase SpaL; Validated
Probab=95.34 E-value=0.065 Score=53.88 Aligned_cols=84 Identities=20% Similarity=0.327 Sum_probs=49.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCC-CCHHHHHHHHHHHhhcCC-------CCCCChH-----H
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQD-FDIIRVTKSILRSVAMGI-------VDHNDLN-----L 291 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~l~~il~~l~~~~-------~~~~~~~-----~ 291 (475)
..++|+|..|+|||||+..+++... -+..+...+... .++.++....+....... .+..... .
T Consensus 152 q~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~ 227 (428)
T PRK08149 152 QRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAAL 227 (428)
T ss_pred CEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHH
Confidence 4789999999999999999987432 233333444333 345566666665432211 1111111 1
Q ss_pred HHHHHHHHh--CCceEEEEEECC
Q 046770 292 LQWKLKKQL--FGKRFLLVLDDV 312 (475)
Q Consensus 292 l~~~l~~~l--~~kr~LlVlDdv 312 (475)
..-.+.+++ +|+++||++||+
T Consensus 228 ~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 228 VATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHcCCCEEEEccch
Confidence 112233333 689999999998
No 350
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.33 E-value=0.023 Score=48.79 Aligned_cols=23 Identities=39% Similarity=0.544 Sum_probs=21.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.+|-|+|.+|+||||||+.+...
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~ 25 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERR 25 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999884
No 351
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=95.33 E-value=0.086 Score=52.91 Aligned_cols=53 Identities=25% Similarity=0.276 Sum_probs=34.7
Q ss_pred cccccccchhHHHHHHHHhc----C----CCCCC--CCCccEEEEEEccCCCcHHHHHHHHHc
Q 046770 194 EAKVYGRSKEREEIVELLLK----E----DGTSH--NNNHFSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 194 ~~~~vGR~~e~~~l~~~L~~----~----~~~~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
...++|.++-++.+...+.. . ..... -......+.++|++|+|||+||+.+..
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 34578988888877655511 0 00000 001125789999999999999999986
No 352
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.32 E-value=0.013 Score=51.36 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=21.5
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
...|.|+|++|+||||+|+.++..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 358899999999999999999884
No 353
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.32 E-value=0.094 Score=48.88 Aligned_cols=56 Identities=14% Similarity=0.242 Sum_probs=33.4
Q ss_pred HHHHHhCCceEEEEEECCCCC-ChhhHhHhhCcCCC--CCCCcEEEEecCChHHHHhcC
Q 046770 295 KLKKQLFGKRFLLVLDDVWNE-NYNDWIDLSRPFQD--GAPGSKIIITTRNADAALIMG 350 (475)
Q Consensus 295 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~ilvTtR~~~v~~~~~ 350 (475)
.+...|..+.=+|+||+--+. +.....++...+.. ...|..||+++.+.+.|...+
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~rya 206 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYA 206 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhC
Confidence 456677777888999986221 11122222222221 235778999999988876544
No 354
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.31 E-value=0.013 Score=51.80 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=21.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 48999999999999999999874
No 355
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=0.047 Score=53.57 Aligned_cols=81 Identities=21% Similarity=0.185 Sum_probs=49.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCC-----CCCChHHHHHHHHHH
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIV-----DHNDLNLLQWKLKKQ 299 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~-----~~~~~~~l~~~l~~~ 299 (475)
+++.|-|.+|+|||||.-++.... ...- .+.+|+--+.. .++ +--...++.... ...+.+.....+.+
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~l--A~~~-~vLYVsGEES~--~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~~- 166 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARL--AKRG-KVLYVSGEESL--QQI-KLRADRLGLPTNNLYLLAETNLEDIIAELEQ- 166 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHH--HhcC-cEEEEeCCcCH--HHH-HHHHHHhCCCccceEEehhcCHHHHHHHHHh-
Confidence 689999999999999999998843 3222 56777655533 222 122233332221 23444544444443
Q ss_pred hCCceEEEEEECCCC
Q 046770 300 LFGKRFLLVLDDVWN 314 (475)
Q Consensus 300 l~~kr~LlVlDdv~~ 314 (475)
.++-|+|+|-+..
T Consensus 167 --~~p~lvVIDSIQT 179 (456)
T COG1066 167 --EKPDLVVIDSIQT 179 (456)
T ss_pred --cCCCEEEEeccce
Confidence 6788999999853
No 356
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.29 E-value=0.012 Score=50.44 Aligned_cols=22 Identities=23% Similarity=0.614 Sum_probs=19.7
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 046770 226 VVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
++.|+|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999999874
No 357
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.29 E-value=0.21 Score=48.43 Aligned_cols=49 Identities=14% Similarity=0.104 Sum_probs=32.6
Q ss_pred eeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHH
Q 046770 354 AYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAA 403 (475)
Q Consensus 354 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai 403 (475)
++++.+++.+|+..++....-..-- ......+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l-~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWL-RSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCcc-ccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999998866533221 111233445566777779998644
No 358
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.28 E-value=0.014 Score=51.66 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=21.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
++++|+|+.|+|||||++.+++.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 47899999999999999999983
No 359
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.28 E-value=0.027 Score=47.03 Aligned_cols=24 Identities=42% Similarity=0.407 Sum_probs=21.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDS 248 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~ 248 (475)
.+|.+.|.-|.||||+++.+++..
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 589999999999999999998853
No 360
>PRK00625 shikimate kinase; Provisional
Probab=95.27 E-value=0.013 Score=51.56 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=19.7
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 046770 226 VVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.|.|+|++|+||||+++.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999873
No 361
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.26 E-value=0.028 Score=55.52 Aligned_cols=100 Identities=19% Similarity=0.238 Sum_probs=56.6
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcCccc----ccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHH
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYNDSRV----QCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKK 298 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~----~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~ 298 (475)
..+=+-|+|..|.|||.|+..+|+...+ +-||. ....++-+.+..-......+. .+.+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--------------~Fm~~vh~~l~~~~~~~~~l~----~va~ 122 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--------------EFMLDVHSRLHQLRGQDDPLP----QVAD 122 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCcccccccccc--------------HHHHHHHHHHHHHhCCCccHH----HHHH
Confidence 4567899999999999999999986433 23332 333333333332222222233 3344
Q ss_pred HhCCceEEEEEECCCCCChhh---HhHhhCcCCCCCCCcEEEEecCC
Q 046770 299 QLFGKRFLLVLDDVWNENYND---WIDLSRPFQDGAPGSKIIITTRN 342 (475)
Q Consensus 299 ~l~~kr~LlVlDdv~~~~~~~---~~~l~~~l~~~~~gs~ilvTtR~ 342 (475)
.+.++..||.||++.-.+..+ ...+...+- ..|..+|.||..
T Consensus 123 ~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gvvlVaTSN~ 167 (362)
T PF03969_consen 123 ELAKESRLLCFDEFQVTDIADAMILKRLFEALF--KRGVVLVATSNR 167 (362)
T ss_pred HHHhcCCEEEEeeeeccchhHHHHHHHHHHHHH--HCCCEEEecCCC
Confidence 455666799999986554322 222333332 246555555553
No 362
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.25 E-value=0.25 Score=44.78 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.+++|.|..|.|||||++.+..-
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 48999999999999999999753
No 363
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.22 E-value=0.1 Score=52.42 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=20.3
Q ss_pred cEEEEEEccCCCcHHHHHHHHHc
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
-.+++++|+.|+||||++..+..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36999999999999999987765
No 364
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.21 E-value=0.02 Score=50.08 Aligned_cols=26 Identities=27% Similarity=0.393 Sum_probs=22.9
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
...++++|+|..|+|||||+..+...
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHH
Confidence 34679999999999999999999874
No 365
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.20 E-value=0.013 Score=52.26 Aligned_cols=22 Identities=45% Similarity=0.573 Sum_probs=20.0
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 046770 226 VVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999874
No 366
>PF13479 AAA_24: AAA domain
Probab=95.19 E-value=0.059 Score=49.26 Aligned_cols=20 Identities=45% Similarity=0.478 Sum_probs=17.9
Q ss_pred EEEEEEccCCCcHHHHHHHH
Q 046770 225 SVVSIIGMGGLGKTTLAQLV 244 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v 244 (475)
-.+.|+|.+|+||||+|..+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 35789999999999999987
No 367
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.18 E-value=0.019 Score=50.68 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.1
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
...++.|+|++|+||||+|+.+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3469999999999999999999874
No 368
>COG4240 Predicted kinase [General function prediction only]
Probab=95.18 E-value=0.069 Score=48.07 Aligned_cols=83 Identities=20% Similarity=0.116 Sum_probs=56.3
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhh-----cCCCCCCChHHHHHHH
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVA-----MGIVDHNDLNLLQWKL 296 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~-----~~~~~~~~~~~l~~~l 296 (475)
++.-+++|.|+-|+||||++..+++....+.. +.++..++.+-+-...-...+.++.. ...++..+..-+..-|
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnVL 126 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNVL 126 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHHH
Confidence 45789999999999999999999885433332 35566666555444444455555542 2335677778788888
Q ss_pred HHHhCCceE
Q 046770 297 KKQLFGKRF 305 (475)
Q Consensus 297 ~~~l~~kr~ 305 (475)
....+++.-
T Consensus 127 nai~~g~~~ 135 (300)
T COG4240 127 NAIARGGPT 135 (300)
T ss_pred HHHhcCCCC
Confidence 888877744
No 369
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.17 E-value=0.021 Score=52.76 Aligned_cols=85 Identities=25% Similarity=0.222 Sum_probs=50.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcC---------------CCC---
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMG---------------IVD--- 285 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~---------------~~~--- 285 (475)
-+++.|.|++|+|||+|+.++.... .+..=+.++|++..++. .++.+.+- .++.. ...
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~-~~~~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNG-LKNFGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH-HHHHT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHh-hhhcCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEeccccccc
Confidence 3689999999999999998876432 11102456788776543 34444332 22110 001
Q ss_pred --CCChHHHHHHHHHHhCC-ceEEEEEECC
Q 046770 286 --HNDLNLLQWKLKKQLFG-KRFLLVLDDV 312 (475)
Q Consensus 286 --~~~~~~l~~~l~~~l~~-kr~LlVlDdv 312 (475)
..+...+...+.+.++. +...+|+|.+
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 34667777777776643 3479999987
No 370
>PTZ00185 ATPase alpha subunit; Provisional
Probab=95.17 E-value=0.14 Score=52.30 Aligned_cols=87 Identities=20% Similarity=0.224 Sum_probs=51.0
Q ss_pred EEEEEccCCCcHHHHH-HHHHcCccc-----ccCcCeEEEEEecCCCCHHHHHHHHHHHhhc-CCC-----CCCC--hHH
Q 046770 226 VVSIIGMGGLGKTTLA-QLVYNDSRV-----QCHFDLKAWTYVSQDFDIIRVTKSILRSVAM-GIV-----DHND--LNL 291 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA-~~v~~~~~~-----~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~-~~~-----~~~~--~~~ 291 (475)
-++|.|..|+|||+|| ..+.+...+ ..+-+.++++.+.+......-+.+.+++-+. ... ..++ ..+
T Consensus 191 R~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~r 270 (574)
T PTZ00185 191 RELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGLQ 270 (574)
T ss_pred EEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHHH
Confidence 5789999999999997 556665322 1234577888888876544334444444331 110 1111 110
Q ss_pred -----HHHHHHHHh--CCceEEEEEECC
Q 046770 292 -----LQWKLKKQL--FGKRFLLVLDDV 312 (475)
Q Consensus 292 -----l~~~l~~~l--~~kr~LlVlDdv 312 (475)
..-.+.+++ +++..|||+||+
T Consensus 271 ~~Apy~a~tiAEYFrd~GkdVLiv~DDL 298 (574)
T PTZ00185 271 YLAPYSGVTMGEYFMNRGRHCLCVYDDL 298 (574)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEcCc
Confidence 111233333 589999999999
No 371
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.16 E-value=0.16 Score=51.88 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=21.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.|++++|+.|+||||++..++..
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHH
Confidence 69999999999999999998864
No 372
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.16 E-value=0.029 Score=49.04 Aligned_cols=24 Identities=29% Similarity=0.582 Sum_probs=21.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDS 248 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~ 248 (475)
.++.|.|++|+|||||++.++.+.
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 578899999999999999999853
No 373
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=0.071 Score=56.19 Aligned_cols=100 Identities=17% Similarity=0.139 Sum_probs=59.1
Q ss_pred ccccccchhHHHHHHHHhcCCC----CCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDG----TSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIR 270 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~----~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 270 (475)
.++=|-++-+.+|.+-+.-.-. -+.+-.+.+=|.++|++|.|||-||++|+.+.. ..|++|..+
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs-------L~FlSVKGP----- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS-------LNFLSVKGP----- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce-------eeEEeecCH-----
Confidence 3456777777777765532100 000112345688999999999999999998532 234566552
Q ss_pred HHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCC
Q 046770 271 VTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWN 314 (475)
Q Consensus 271 ~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~ 314 (475)
+++...-++ .++.+.+...+.=..++|+|.||++++
T Consensus 740 ---ELLNMYVGq-----SE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 ---ELLNMYVGQ-----SEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred ---HHHHHHhcc-----hHHHHHHHHHHhhccCCeEEEeccccc
Confidence 233332222 223333334444467899999999954
No 374
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.14 E-value=0.078 Score=53.71 Aligned_cols=87 Identities=17% Similarity=0.233 Sum_probs=52.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCC-CHHHHHHHHHHHhhcCC-------CCCCChHH-----
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDF-DIIRVTKSILRSVAMGI-------VDHNDLNL----- 291 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~l~~il~~l~~~~-------~~~~~~~~----- 291 (475)
.-++|.|..|+|||||+..+..+.... +=+.++++-+.+.. .+.+++..++..-.... .+......
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~~-~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~ 223 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVAL 223 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 357999999999999999886643221 12457777776654 44566666654321111 01111111
Q ss_pred HHHHHHHHh---CCceEEEEEECC
Q 046770 292 LQWKLKKQL---FGKRFLLVLDDV 312 (475)
Q Consensus 292 l~~~l~~~l---~~kr~LlVlDdv 312 (475)
..-.+.+++ +|+++||++|++
T Consensus 224 ~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 224 TGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHhcCCceEEEecch
Confidence 122344555 789999999998
No 375
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.22 Score=43.67 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=30.5
Q ss_pred HHHHHhCCceEEEEEECCCCC-ChhhHhHhhCcCC-CCCCCcEEEEecCChH
Q 046770 295 KLKKQLFGKRFLLVLDDVWNE-NYNDWIDLSRPFQ-DGAPGSKIIITTRNAD 344 (475)
Q Consensus 295 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~-~~~~gs~ilvTtR~~~ 344 (475)
.|.+..-.++-|-+||+.... +...-..+...+. ....|..||.||..+-
T Consensus 140 AlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l 191 (209)
T COG4133 140 ALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPL 191 (209)
T ss_pred HHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Confidence 455666788899999998543 2222222222222 3456889999998653
No 376
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.13 E-value=0.17 Score=48.86 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=20.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.+++|+|+.|.|||||.+.+...
T Consensus 29 ei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 29 RIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999764
No 377
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.13 E-value=0.024 Score=50.50 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=27.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEe
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYV 262 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 262 (475)
+++.|+|+.|+|||||++.+.. .....|...++.+.
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~TT 38 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHTT 38 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHH--hcccccccceeecc
Confidence 6889999999999999999988 34455654444443
No 378
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.13 E-value=0.055 Score=48.88 Aligned_cols=21 Identities=29% Similarity=0.254 Sum_probs=19.8
Q ss_pred EEEEEEccCCCcHHHHHHHHH
Q 046770 225 SVVSIIGMGGLGKTTLAQLVY 245 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~ 245 (475)
+++.|+|+.|.|||||.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 689999999999999999987
No 379
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=95.13 E-value=0.055 Score=58.23 Aligned_cols=130 Identities=17% Similarity=0.081 Sum_probs=69.8
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHH
Q 046770 196 KVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSI 275 (475)
Q Consensus 196 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~i 275 (475)
.++|....+.++.+.+..... .. .-|.|+|..|+||+++|+.+.+..... -..-+.|++..... ..+-..+
T Consensus 326 ~l~g~s~~~~~~~~~~~~~a~-----~~-~pvli~Ge~GtGK~~~A~~ih~~s~r~--~~pfv~vnc~~~~~-~~~~~el 396 (638)
T PRK11388 326 HMPQDSPQMRRLIHFGRQAAK-----SS-FPVLLCGEEGVGKALLAQAIHNESERA--AGPYIAVNCQLYPD-EALAEEF 396 (638)
T ss_pred ceEECCHHHHHHHHHHHHHhC-----cC-CCEEEECCCCcCHHHHHHHHHHhCCcc--CCCeEEEECCCCCh-HHHHHHh
Confidence 578988888888777765221 22 247899999999999999998743111 11223344444321 1222222
Q ss_pred HHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCCC-----------CCcEEEEecCC
Q 046770 276 LRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDGA-----------PGSKIIITTRN 342 (475)
Q Consensus 276 l~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~ 342 (475)
.+....... ......+. ....=.|+||++..........++..+..+. ...+||.||..
T Consensus 397 ----fg~~~~~~~-~~~~g~~~---~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~ 466 (638)
T PRK11388 397 ----LGSDRTDSE-NGRLSKFE---LAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTA 466 (638)
T ss_pred ----cCCCCcCcc-CCCCCcee---ECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccC
Confidence 221111000 00000000 1123468999998777666666766554321 13578887765
No 380
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.12 E-value=0.16 Score=45.27 Aligned_cols=21 Identities=38% Similarity=0.224 Sum_probs=18.5
Q ss_pred EEEEEccCCCcHHHHHHHHHc
Q 046770 226 VVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~ 246 (475)
++.|+|+.|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999873
No 381
>PRK06217 hypothetical protein; Validated
Probab=95.12 E-value=0.015 Score=51.77 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.5
Q ss_pred EEEEEccCCCcHHHHHHHHHcCc
Q 046770 226 VVSIIGMGGLGKTTLAQLVYNDS 248 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~~ 248 (475)
.|.|.|.+|+||||||+.+....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999998743
No 382
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.09 E-value=0.12 Score=47.71 Aligned_cols=40 Identities=18% Similarity=0.092 Sum_probs=28.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQD 265 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~ 265 (475)
-.++.|.|.+|+|||+|+.++..... ..-...+|++....
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~--~~g~~~~~is~e~~ 59 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGL--RDGDPVIYVTTEES 59 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHH--hcCCeEEEEEccCC
Confidence 37899999999999999998765321 12346778876443
No 383
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.07 E-value=0.051 Score=53.56 Aligned_cols=111 Identities=14% Similarity=0.105 Sum_probs=59.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCce
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKR 304 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr 304 (475)
..+.|.|+.|+||||+.+.+.+. ...+....++. +.++... ..... ..+........+.......++..+...+
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~--i~~~~~~~i~t-iEdp~E~--~~~~~-~~~i~q~evg~~~~~~~~~l~~~lr~~p 196 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDY--INKNAAGHIIT-IEDPIEY--VHRNK-RSLINQREVGLDTLSFANALRAALREDP 196 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh--hCcCCCCEEEE-EcCChhh--hccCc-cceEEccccCCCCcCHHHHHHHhhccCC
Confidence 57999999999999999998763 23333344433 2222110 00000 0000000011112234566777888888
Q ss_pred EEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCChHHH
Q 046770 305 FLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNADAA 346 (475)
Q Consensus 305 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~ 346 (475)
=.|++|++.+ .+.+...... ...|..++.|....+..
T Consensus 197 d~i~vgEird--~~~~~~~l~a---a~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 197 DVILIGEMRD--LETVELALTA---AETGHLVFGTLHTNSAA 233 (343)
T ss_pred CEEEEeCCCC--HHHHHHHHHH---HHcCCcEEEEEcCCCHH
Confidence 8999999954 3444433222 23455677777664444
No 384
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=95.06 E-value=0.69 Score=43.66 Aligned_cols=96 Identities=20% Similarity=0.192 Sum_probs=65.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCce
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKR 304 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr 304 (475)
+.+.++|..|+|||+-++.+++.. ....-+..+..++...++..+........ ..........+...+.+..
T Consensus 95 ~l~~vyg~~g~gKt~a~~~y~~s~------p~~~l~~~~p~~~a~~~i~~i~~~~~~~~--~~~~~d~~~~~~~~l~~~~ 166 (297)
T COG2842 95 SLVVVYGYAGLGKTQAAKNYAPSN------PNALLIEADPSYTALVLILIICAAAFGAT--DGTINDLTERLMIRLRDTV 166 (297)
T ss_pred ceEEEeccccchhHHHHHhhcccC------ccceeecCChhhHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHccCc
Confidence 378899999999999999998842 22333455666677777776666655542 2333445555666668888
Q ss_pred EEEEEECCCCCChhhHhHhhCcCC
Q 046770 305 FLLVLDDVWNENYNDWIDLSRPFQ 328 (475)
Q Consensus 305 ~LlVlDdv~~~~~~~~~~l~~~l~ 328 (475)
=+|+.|+........++.++....
T Consensus 167 ~~iivDEA~~L~~~ale~lr~i~d 190 (297)
T COG2842 167 RLIIVDEADRLPYRALEELRRIHD 190 (297)
T ss_pred ceeeeehhhccChHHHHHHHHHHH
Confidence 899999987776667777665543
No 385
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.05 E-value=0.015 Score=49.52 Aligned_cols=22 Identities=41% Similarity=0.623 Sum_probs=20.4
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 046770 226 VVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
+|.|.|++|+||||+|+.+.++
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~ 23 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEH 23 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHH
Confidence 6889999999999999999984
No 386
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.04 E-value=0.066 Score=47.51 Aligned_cols=117 Identities=17% Similarity=0.056 Sum_probs=58.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecC---CCCHHHHHHHHH--HHh--hcCC-CCCCC-------h
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQ---DFDIIRVTKSIL--RSV--AMGI-VDHND-------L 289 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~---~~~~~~~l~~il--~~l--~~~~-~~~~~-------~ 289 (475)
..|.|+|..|-||||.|.-+.-.. ....+. +..+..-. ......++..+- .-. +... ....+ .
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra-~g~G~~-V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~ 100 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRA-VGHGKK-VGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAA 100 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHH-HHCCCe-EEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHH
Confidence 578899999999999997664421 111111 22222211 223333333310 000 0000 00011 1
Q ss_pred HHHHHHHHHHhCCce-EEEEEECCCC---CChhhHhHhhCcCCCCCCCcEEEEecCCh
Q 046770 290 NLLQWKLKKQLFGKR-FLLVLDDVWN---ENYNDWIDLSRPFQDGAPGSKIIITTRNA 343 (475)
Q Consensus 290 ~~l~~~l~~~l~~kr-~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 343 (475)
.......++.+.... =|+|||++-. ......+++...+.....+.-||+|-|+.
T Consensus 101 ~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 101 REGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 122333445554444 4999999822 11233455666565555678999999984
No 387
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.03 E-value=0.02 Score=46.72 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=19.8
Q ss_pred EEEEccCCCcHHHHHHHHHcCc
Q 046770 227 VSIIGMGGLGKTTLAQLVYNDS 248 (475)
Q Consensus 227 v~I~G~gGiGKTtLA~~v~~~~ 248 (475)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6899999999999999998754
No 388
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.02 E-value=0.11 Score=52.44 Aligned_cols=84 Identities=18% Similarity=0.261 Sum_probs=49.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCC-HHHHHHHHHHHhhcCC-------CCCCChHH-----
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFD-IIRVTKSILRSVAMGI-------VDHNDLNL----- 291 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~~l~~il~~l~~~~-------~~~~~~~~----- 291 (475)
..++|+|..|+|||||++.+++... .+..+++.+.+... +.+++...+..-.... .+......
T Consensus 159 qri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~~ 234 (442)
T PRK08927 159 QRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAY 234 (442)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHHH
Confidence 4789999999999999999987432 24455566666543 3355544444321111 01111111
Q ss_pred HHHHHHHHh--CCceEEEEEECC
Q 046770 292 LQWKLKKQL--FGKRFLLVLDDV 312 (475)
Q Consensus 292 l~~~l~~~l--~~kr~LlVlDdv 312 (475)
..-.+.+++ +|+.+|+++||+
T Consensus 235 ~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 235 LTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHCCCcEEEEEeCc
Confidence 111233444 689999999999
No 389
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.02 E-value=0.017 Score=50.53 Aligned_cols=21 Identities=43% Similarity=0.604 Sum_probs=18.2
Q ss_pred EEEEccCCCcHHHHHHHHHcC
Q 046770 227 VSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 227 v~I~G~gGiGKTtLA~~v~~~ 247 (475)
+.|+|.+|+|||||++.+++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 689999999999999999874
No 390
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.01 E-value=0.089 Score=52.87 Aligned_cols=85 Identities=18% Similarity=0.185 Sum_probs=46.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCC-------CCCCChHH-----H
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGI-------VDHNDLNL-----L 292 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~-------~~~~~~~~-----l 292 (475)
..++|.|..|+|||||++.+..... ....++...-...-.+.+++...+..-.... .+...... .
T Consensus 141 q~i~I~G~sG~GKTtLl~~I~~~~~---~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~~ 217 (418)
T TIGR03498 141 QRLGIFAGSGVGKSTLLSMLARNTD---ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYT 217 (418)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHHH
Confidence 4789999999999999998887432 1122222222223344555555444321111 01111111 1
Q ss_pred HHHHHHHh--CCceEEEEEECC
Q 046770 293 QWKLKKQL--FGKRFLLVLDDV 312 (475)
Q Consensus 293 ~~~l~~~l--~~kr~LlVlDdv 312 (475)
.-.+.+++ +++.+||++||+
T Consensus 218 a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 218 ATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHcCCCEEEeccch
Confidence 11234444 688999999998
No 391
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.01 E-value=0.14 Score=47.76 Aligned_cols=50 Identities=12% Similarity=0.124 Sum_probs=32.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHH
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILR 277 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~ 277 (475)
.++.|.|.+|+|||+++.+++.+.... +=..++|++... +..++...++.
T Consensus 14 ~l~lI~G~~G~GKT~~~~~~~~~~~~~-~g~~vly~s~E~--~~~~~~~r~~~ 63 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAENIAKK-QGKPVLFFSLEM--SKEQLLQRLLA 63 (242)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCceEEEeCCC--CHHHHHHHHHH
Confidence 588999999999999999887643222 123466666554 34455555543
No 392
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.00 E-value=0.02 Score=48.50 Aligned_cols=39 Identities=23% Similarity=0.365 Sum_probs=27.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQ 264 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~ 264 (475)
++|.|+|+.|+|||||++.+.+... +..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~-~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK-RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH-HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh-HcCCceEEEEEccC
Confidence 4799999999999999999998532 24455555555554
No 393
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.99 E-value=0.016 Score=49.27 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=19.9
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 046770 226 VVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
+|.|.|++|+||||+|+.+...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~ 22 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKK 22 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999873
No 394
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=94.95 E-value=0.11 Score=52.31 Aligned_cols=84 Identities=20% Similarity=0.281 Sum_probs=48.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCC-CCHHHHHHHHHHHhhcCC-------CCCCChHHH----
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQD-FDIIRVTKSILRSVAMGI-------VDHNDLNLL---- 292 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~l~~il~~l~~~~-------~~~~~~~~l---- 292 (475)
..++|+|..|+|||||++.+.+.. +.+..++..+.+. ..+.+++.+.+..-.... .+.......
T Consensus 156 qrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~~ 231 (433)
T PRK07594 156 QRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALF 231 (433)
T ss_pred CEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHHH
Confidence 478999999999999999998743 2344555555553 334455555432110000 011111111
Q ss_pred -HHHHHHHh--CCceEEEEEECC
Q 046770 293 -QWKLKKQL--FGKRFLLVLDDV 312 (475)
Q Consensus 293 -~~~l~~~l--~~kr~LlVlDdv 312 (475)
.-.+.+++ +|+++||++||+
T Consensus 232 ~a~tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 232 VATTIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHHHHCCCcEEEEEeCH
Confidence 11233444 688999999999
No 395
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.95 E-value=0.021 Score=51.02 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.++.|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 37899999999999999999874
No 396
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=94.93 E-value=0.074 Score=49.98 Aligned_cols=52 Identities=21% Similarity=0.333 Sum_probs=35.3
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCc
Q 046770 196 KVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDS 248 (475)
Q Consensus 196 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 248 (475)
.++|-.--++.++..+.+ -..+....++-+++.+|.+|+||..+++.++++.
T Consensus 83 ~lfGQHla~~~Vv~alk~-~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~ 134 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKS-HWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENL 134 (344)
T ss_pred HhhchHHHHHHHHHHHHH-HhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHH
Confidence 466655555555555543 2222222678899999999999999999888753
No 397
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.90 E-value=0.15 Score=45.76 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.+++|.|+.|.|||||.+.+..-
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 398
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.90 E-value=0.041 Score=56.64 Aligned_cols=96 Identities=21% Similarity=0.255 Sum_probs=51.9
Q ss_pred HHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEE-EEEecCCCCHHHHHHHHHHHhhc---
Q 046770 206 EIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKA-WTYVSQDFDIIRVTKSILRSVAM--- 281 (475)
Q Consensus 206 ~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~-wv~v~~~~~~~~~l~~il~~l~~--- 281 (475)
.++++|.....+ .-.+|+|++|+|||||++.+.+... ..+-++.+ .+-|.+..... .++-+.+..
T Consensus 405 RvIDll~PIGkG-------QR~LIvgpp~aGKTtLL~~IAn~i~-~n~~~~~~ivvLIgERpeEV---tdm~rsVkgeVV 473 (672)
T PRK12678 405 RVIDLIMPIGKG-------QRGLIVSPPKAGKTTILQNIANAIT-TNNPECHLMVVLVDERPEEV---TDMQRSVKGEVI 473 (672)
T ss_pred eeeeeecccccC-------CEeEEeCCCCCCHHHHHHHHHHHHh-hcCCCeEEEEEEEeCchhhH---HHHHHhccceEE
Confidence 467777663221 3578999999999999999988421 22333333 44555543322 222222211
Q ss_pred -CCCCCCC-----hHHHHHHHHHHh--CCceEEEEEECC
Q 046770 282 -GIVDHND-----LNLLQWKLKKQL--FGKRFLLVLDDV 312 (475)
Q Consensus 282 -~~~~~~~-----~~~l~~~l~~~l--~~kr~LlVlDdv 312 (475)
...+... ...+.-.+.+++ .++.+||++|++
T Consensus 474 asT~D~p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 474 ASTFDRPPSDHTTVAELAIERAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 1111111 111222233444 689999999998
No 399
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=94.90 E-value=0.092 Score=52.02 Aligned_cols=42 Identities=21% Similarity=0.173 Sum_probs=31.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDF 266 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~ 266 (475)
.++.|.|.+|+|||.||-.++.............+++.+...
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l 43 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPL 43 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchH
Confidence 588999999999999999998854113445566677666643
No 400
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.89 E-value=0.02 Score=51.92 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=21.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.+++|+|++|+|||||++.++..
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 68999999999999999999874
No 401
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=94.89 E-value=0.19 Score=48.95 Aligned_cols=59 Identities=19% Similarity=0.210 Sum_probs=40.8
Q ss_pred HHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCC-HHHHHHHH
Q 046770 206 EIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFD-IIRVTKSI 275 (475)
Q Consensus 206 ~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~~l~~i 275 (475)
++++.|.....+ ..++|.|..|+|||+|++++.+.. +-+.++++-+.+..+ +.+++.++
T Consensus 146 rvID~l~Pi~kG-------qr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 146 RVLDTLFPVVKG-------GTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred hhhhccccccCC-------CEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHH
Confidence 456666552221 368999999999999999999853 335788888877543 44555554
No 402
>PRK06936 type III secretion system ATPase; Provisional
Probab=94.86 E-value=0.12 Score=51.97 Aligned_cols=84 Identities=19% Similarity=0.287 Sum_probs=50.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCC-HHHHHHHHHHHhhcCCC-----CCCC--hHH-----
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFD-IIRVTKSILRSVAMGIV-----DHND--LNL----- 291 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~~l~~il~~l~~~~~-----~~~~--~~~----- 291 (475)
..++|.|..|+|||||.+.+++... -+.++++.+.+... +.+++...+..-..... ..++ ...
T Consensus 163 q~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~ 238 (439)
T PRK06936 163 QRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGF 238 (439)
T ss_pred CEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHHH
Confidence 4789999999999999999998532 35677777776543 44444443332111110 1111 111
Q ss_pred HHHHHHHHh--CCceEEEEEECC
Q 046770 292 LQWKLKKQL--FGKRFLLVLDDV 312 (475)
Q Consensus 292 l~~~l~~~l--~~kr~LlVlDdv 312 (475)
..-.+.+++ +|+++|+++||+
T Consensus 239 ~a~tiAEyfrd~G~~Vll~~Dsl 261 (439)
T PRK06936 239 VATSIAEYFRDQGKRVLLLMDSV 261 (439)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 111233343 689999999998
No 403
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.86 E-value=0.02 Score=48.35 Aligned_cols=21 Identities=29% Similarity=0.594 Sum_probs=19.4
Q ss_pred EEEEccCCCcHHHHHHHHHcC
Q 046770 227 VSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 227 v~I~G~gGiGKTtLA~~v~~~ 247 (475)
+.|+|+.|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999884
No 404
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.84 E-value=0.026 Score=50.89 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.3
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHc
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
+...++.|+|.+|+||||||+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999999987
No 405
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.84 E-value=0.26 Score=45.29 Aligned_cols=175 Identities=11% Similarity=0.091 Sum_probs=78.9
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCC---CCCChHHHHHHHHHH
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIV---DHNDLNLLQWKLKKQ 299 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~---~~~~~~~l~~~l~~~ 299 (475)
+.+++.|+|+.|.||||+.+.+.... +- +..-.+|..... .......++..++.... .......-...+...
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~-~l--a~~g~~vpa~~~--~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a~i 103 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIV-LM--AQIGCFVPCDSA--DIPIVDCILARVGASDSQLKGVSTFMAEMLETAAI 103 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH-HH--HHhCCCcCcccE--EEeccceeEeeeccccchhcCcChHHHHHHHHHHH
Confidence 34789999999999999998875321 00 000001111110 00011122222211110 111112112223333
Q ss_pred h--CCceEEEEEECCCCC----Ch--hhHhHhhCcCCCCCCCcEEEEecCChHHHHhcCCCc---eeeCCCCCHH--HHH
Q 046770 300 L--FGKRFLLVLDDVWNE----NY--NDWIDLSRPFQDGAPGSKIIITTRNADAALIMGTVQ---AYPLKGLSND--DCM 366 (475)
Q Consensus 300 l--~~kr~LlVlDdv~~~----~~--~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~---~~~l~~L~~~--~~~ 366 (475)
+ -..+-|++||+.... +. ..|. +...+.. ..++.+|+||...++...+.... ..++.....+ +..
T Consensus 104 l~~~~~~sLvLLDEp~~gT~~lD~~~~~~~-il~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~~~~~~~ 181 (222)
T cd03285 104 LKSATENSLIIIDELGRGTSTYDGFGLAWA-IAEYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTDDASRTL 181 (222)
T ss_pred HHhCCCCeEEEEecCcCCCChHHHHHHHHH-HHHHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEeCCCCcE
Confidence 3 356789999999422 11 1122 1122322 24788999999877766554221 1222111111 111
Q ss_pred HHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 046770 367 CLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCLLHG 412 (475)
Q Consensus 367 ~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~ 412 (475)
.|..+.. .+. .. ...+-.+++++ |+|-.+.--|..+..
T Consensus 182 -~~~Y~l~-~G~--~~---~s~a~~~a~~~-g~p~~vi~~A~~~~~ 219 (222)
T cd03285 182 -TMLYKVE-KGA--CD---QSFGIHVAELA-NFPKEVIEMAKQKAL 219 (222)
T ss_pred -eEEEEEe-eCC--CC---CcHHHHHHHHh-CcCHHHHHHHHHHHH
Confidence 1111111 111 01 23455566665 899888877776654
No 406
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.83 E-value=0.022 Score=49.09 Aligned_cols=20 Identities=40% Similarity=0.747 Sum_probs=18.5
Q ss_pred EEEEEccCCCcHHHHHHHHH
Q 046770 226 VVSIIGMGGLGKTTLAQLVY 245 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~ 245 (475)
.|+|+|.+|+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 57899999999999999887
No 407
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=94.82 E-value=0.12 Score=46.65 Aligned_cols=22 Identities=23% Similarity=0.146 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+++|+|+.|.|||||.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 5899999999999999999973
No 408
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.78 E-value=0.03 Score=49.95 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=22.3
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
...+|.|+|++|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3478999999999999999999874
No 409
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.78 E-value=0.07 Score=56.66 Aligned_cols=43 Identities=28% Similarity=0.346 Sum_probs=34.0
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.+++|.++.++.+...+.. . +.+.++|++|+||||+|+.+.+.
T Consensus 18 ~~viG~~~a~~~l~~a~~~--------~--~~~ll~G~pG~GKT~la~~la~~ 60 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQ--------K--RNVLLIGEPGVGKSMLAKAMAEL 60 (608)
T ss_pred hhccCHHHHHHHHHHHHHc--------C--CCEEEECCCCCCHHHHHHHHHHH
Confidence 4688988877777776654 2 24559999999999999999874
No 410
>PRK13947 shikimate kinase; Provisional
Probab=94.77 E-value=0.021 Score=50.08 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=19.9
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 046770 226 VVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
-|.|+|++|+||||+|+.+.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~ 24 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATT 24 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999999873
No 411
>PRK14530 adenylate kinase; Provisional
Probab=94.75 E-value=0.022 Score=52.17 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=19.9
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 046770 226 VVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.|.|+|++|+||||+|+.+...
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999863
No 412
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=94.75 E-value=0.092 Score=54.26 Aligned_cols=46 Identities=17% Similarity=0.281 Sum_probs=35.2
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 196 KVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 196 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.++|+...+.++...+.... ..-..|.|+|.+|+|||++|+.+...
T Consensus 139 ~lig~s~~~~~l~~~~~~~~------~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRLS------RSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred cceecCHHHHHHHHHHHHHh------ccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 58898888888777665422 12245789999999999999999874
No 413
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.72 E-value=0.053 Score=49.89 Aligned_cols=52 Identities=15% Similarity=0.125 Sum_probs=29.0
Q ss_pred EEEEEccCCCcHHHHHHHHHcCcc-----cccCcCeEEEEEecCCCCHHHHHHHHHH
Q 046770 226 VVSIIGMGGLGKTTLAQLVYNDSR-----VQCHFDLKAWTYVSQDFDIIRVTKSILR 277 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~~~-----~~~~F~~~~wv~v~~~~~~~~~l~~il~ 277 (475)
+..|.|++|.|||+++..+..... ....-...+-++...+..+..++..+..
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 688999999999977666655320 1123344455555555555555555544
No 414
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=94.72 E-value=0.19 Score=54.81 Aligned_cols=144 Identities=16% Similarity=0.172 Sum_probs=78.1
Q ss_pred chhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhh
Q 046770 201 SKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVA 280 (475)
Q Consensus 201 ~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~ 280 (475)
...+.+|.+.+.. ..|+.|.|..|.||||-.-+++-+.-. .....+-+.-........+...+.++++
T Consensus 52 ~~~~~~i~~ai~~----------~~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~ 119 (845)
T COG1643 52 TAVRDEILKAIEQ----------NQVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELG 119 (845)
T ss_pred HHHHHHHHHHHHh----------CCEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhC
Confidence 4556778888755 368999999999999988777653211 1123343333333455667777888777
Q ss_pred cCCC----------C---------CCChHHHHHHHH-HHhCCceEEEEEECCCCCChhh---HhHhhCcCCCCCCCcEEE
Q 046770 281 MGIV----------D---------HNDLNLLQWKLK-KQLFGKRFLLVLDDVWNENYND---WIDLSRPFQDGAPGSKII 337 (475)
Q Consensus 281 ~~~~----------~---------~~~~~~l~~~l~-~~l~~kr~LlVlDdv~~~~~~~---~~~l~~~l~~~~~gs~il 337 (475)
.... + -.+...+.+.++ +.+-.+=-.||+|.+++-+... ..-+...+......-|||
T Consensus 120 ~~~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiI 199 (845)
T COG1643 120 EKLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLI 199 (845)
T ss_pred CCcCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEE
Confidence 6431 0 111233333333 2222333488999998754211 111111122222248999
Q ss_pred EecCCh---HHHHhcCCCceee
Q 046770 338 ITTRNA---DAALIMGTVQAYP 356 (475)
Q Consensus 338 vTtR~~---~v~~~~~~~~~~~ 356 (475)
|+|=.- .++..++...+++
T Consensus 200 imSATld~~rfs~~f~~apvi~ 221 (845)
T COG1643 200 IMSATLDAERFSAYFGNAPVIE 221 (845)
T ss_pred EEecccCHHHHHHHcCCCCEEE
Confidence 998763 3444444333333
No 415
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.71 E-value=0.19 Score=54.09 Aligned_cols=22 Identities=41% Similarity=0.670 Sum_probs=19.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
..|+|+|..|+|||||++.+..
T Consensus 500 e~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 500 EKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999855
No 416
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.70 E-value=0.03 Score=44.74 Aligned_cols=21 Identities=43% Similarity=0.463 Sum_probs=19.4
Q ss_pred EEEEEEccCCCcHHHHHHHHH
Q 046770 225 SVVSIIGMGGLGKTTLAQLVY 245 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~ 245 (475)
..++|+|+.|+|||||+..+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 578999999999999999976
No 417
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.70 E-value=0.18 Score=53.08 Aligned_cols=23 Identities=39% Similarity=0.501 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..++|+|+.|+|||||++.+..-
T Consensus 362 ~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 362 ERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57899999999999999999753
No 418
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.70 E-value=0.1 Score=48.85 Aligned_cols=77 Identities=16% Similarity=0.120 Sum_probs=42.5
Q ss_pred EEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCC--CCHHHHHHHHHHHh----hcCC--CCCCChHHHHHHHH
Q 046770 226 VVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQD--FDIIRVTKSILRSV----AMGI--VDHNDLNLLQWKLK 297 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~--~~~~~~l~~il~~l----~~~~--~~~~~~~~l~~~l~ 297 (475)
+|+|.|.+|+||||+++.+.......+ .....++...- ++-...-..+.... +-.. ++..+.+.+.+.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g--~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREG--IHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcC--CceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 589999999999999998876322111 11233332221 12112212222221 1111 45667788888888
Q ss_pred HHhCCce
Q 046770 298 KQLFGKR 304 (475)
Q Consensus 298 ~~l~~kr 304 (475)
.+.+++.
T Consensus 79 ~L~~g~~ 85 (277)
T cd02029 79 TYGETGR 85 (277)
T ss_pred HHHcCCC
Confidence 8877653
No 419
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.68 E-value=0.046 Score=49.01 Aligned_cols=22 Identities=45% Similarity=0.614 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.|++|+|++|+|||||.+.+..
T Consensus 29 evv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 4899999999999999999865
No 420
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.66 E-value=0.12 Score=48.67 Aligned_cols=83 Identities=22% Similarity=0.245 Sum_probs=46.6
Q ss_pred EEEEEccCCCcHHHHH-HHHHcCcccccCcCeE-EEEEecCCC-CHHHHHHHHHHHhhcCC-------CCCCChHH----
Q 046770 226 VVSIIGMGGLGKTTLA-QLVYNDSRVQCHFDLK-AWTYVSQDF-DIIRVTKSILRSVAMGI-------VDHNDLNL---- 291 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~~-~wv~v~~~~-~~~~~l~~il~~l~~~~-------~~~~~~~~---- 291 (475)
-++|.|..|+|||+|| ..+.+.. +-+.. +++-+.+.. ...+++..+...-.... .+......
T Consensus 71 r~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a~ 146 (274)
T cd01132 71 RELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAP 146 (274)
T ss_pred EEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHHH
Confidence 5789999999999996 6565531 22333 667776654 34555555553211110 01111111
Q ss_pred -HHHHHHHHh--CCceEEEEEECC
Q 046770 292 -LQWKLKKQL--FGKRFLLVLDDV 312 (475)
Q Consensus 292 -l~~~l~~~l--~~kr~LlVlDdv 312 (475)
..-.+.+++ +|+.+|+++||+
T Consensus 147 ~~a~aiAE~fr~~G~~Vlvl~Dsl 170 (274)
T cd01132 147 YTGCAMGEYFMDNGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHCCCCEEEEEcCh
Confidence 111223333 589999999999
No 421
>PRK13949 shikimate kinase; Provisional
Probab=94.66 E-value=0.024 Score=49.75 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=20.0
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 046770 226 VVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
-|.|+|++|+||||+++.+++.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999884
No 422
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.66 E-value=0.032 Score=50.68 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=22.5
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
...+.+.|+|++|+|||||++.+.+.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 45578999999999999999999763
No 423
>PF13245 AAA_19: Part of AAA domain
Probab=94.66 E-value=0.051 Score=40.57 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=16.4
Q ss_pred EEEEEEccCCCcHHHHH-HHHHc
Q 046770 225 SVVSIIGMGGLGKTTLA-QLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA-~~v~~ 246 (475)
+++.|.|++|.|||+++ ..+..
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57888999999999544 44444
No 424
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.64 E-value=0.021 Score=49.76 Aligned_cols=21 Identities=29% Similarity=0.574 Sum_probs=18.7
Q ss_pred EEEEccCCCcHHHHHHHHHcC
Q 046770 227 VSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 227 v~I~G~gGiGKTtLA~~v~~~ 247 (475)
+.|+|++|+||||+|+.+.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999874
No 425
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.63 E-value=0.13 Score=52.43 Aligned_cols=82 Identities=20% Similarity=0.163 Sum_probs=48.5
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCC-----CCCCChHHHHHHHHH
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGI-----VDHNDLNLLQWKLKK 298 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~-----~~~~~~~~l~~~l~~ 298 (475)
-.++.|.|.+|+|||||+.+++.+.. ..-..++|++..+.+ ..+... .+.++... ....+.+.+...+.+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a--~~g~~vlYvs~Ees~--~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i~~ 154 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLA--AAGGKVLYVSGEESA--SQIKLR-AERLGLPSDNLYLLAETNLEAILATIEE 154 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccccH--HHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHHHh
Confidence 36899999999999999999887432 122356777765433 333222 33333211 122344444444432
Q ss_pred HhCCceEEEEEECCC
Q 046770 299 QLFGKRFLLVLDDVW 313 (475)
Q Consensus 299 ~l~~kr~LlVlDdv~ 313 (475)
.+.-++|+|.+.
T Consensus 155 ---~~~~lVVIDSIq 166 (446)
T PRK11823 155 ---EKPDLVVIDSIQ 166 (446)
T ss_pred ---hCCCEEEEechh
Confidence 355689999984
No 426
>PRK09099 type III secretion system ATPase; Provisional
Probab=94.62 E-value=0.11 Score=52.66 Aligned_cols=85 Identities=18% Similarity=0.231 Sum_probs=47.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCC-------CCCCChHH-----H
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGI-------VDHNDLNL-----L 292 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~-------~~~~~~~~-----l 292 (475)
..++|.|..|+|||||++.+....... ..+++..-.+...+.++...+...-.... .+...... .
T Consensus 164 q~~~I~G~sG~GKTtLl~~ia~~~~~d---~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~~~ 240 (441)
T PRK09099 164 QRMGIFAPAGVGKSTLMGMFARGTQCD---VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAYV 240 (441)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCC---eEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHHHH
Confidence 478999999999999999998753221 23333333333445555555543311111 01111111 1
Q ss_pred HHHHHHHh--CCceEEEEEECC
Q 046770 293 QWKLKKQL--FGKRFLLVLDDV 312 (475)
Q Consensus 293 ~~~l~~~l--~~kr~LlVlDdv 312 (475)
.-.+.+++ +|+.+|+++||+
T Consensus 241 a~tiAEyfrd~G~~VLl~~Dsl 262 (441)
T PRK09099 241 ATAIAEYFRDRGLRVLLMMDSL 262 (441)
T ss_pred HHHHHHHHHHcCCCEEEeccch
Confidence 11233444 589999999998
No 427
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.62 E-value=0.064 Score=52.61 Aligned_cols=107 Identities=18% Similarity=0.072 Sum_probs=63.3
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHH
Q 046770 196 KVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSI 275 (475)
Q Consensus 196 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~i 275 (475)
.++|++..+..+...+.. . +-+.+.|++|+|||+||+.++.. .. -...+|.+.....+.+++-..
T Consensus 25 ~~~g~~~~~~~~l~a~~~-~---------~~vll~G~PG~gKT~la~~lA~~--l~---~~~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 25 VVVGDEEVIELALLALLA-G---------GHVLLEGPPGVGKTLLARALARA--LG---LPFVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred eeeccHHHHHHHHHHHHc-C---------CCEEEECCCCccHHHHHHHHHHH--hC---CCeEEEecCCCCCHHHhcCch
Confidence 378888877777766655 2 35789999999999999999983 22 233566667666666654433
Q ss_pred HHHhhcCCCCCCChHHHHHHHHHHhC-----CceEEEEEECCCCCChhhHhHhhCcC
Q 046770 276 LRSVAMGIVDHNDLNLLQWKLKKQLF-----GKRFLLVLDDVWNENYNDWIDLSRPF 327 (475)
Q Consensus 276 l~~l~~~~~~~~~~~~l~~~l~~~l~-----~kr~LlVlDdv~~~~~~~~~~l~~~l 327 (475)
.-....... .-..+.. .-+.++++|.++.........++..+
T Consensus 90 ~~~~~~~~~----------~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l 136 (329)
T COG0714 90 AYAALLLEP----------GEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEAL 136 (329)
T ss_pred hHhhhhccC----------CeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHH
Confidence 322211000 0000000 11158999999876654444444433
No 428
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.61 E-value=0.028 Score=51.23 Aligned_cols=56 Identities=13% Similarity=0.153 Sum_probs=33.8
Q ss_pred HHHHHhCCceEEEEEECCCCC-ChhhHhHhhCcCCC--CCCCcEEEEecCChHHHHhcC
Q 046770 295 KLKKQLFGKRFLLVLDDVWNE-NYNDWIDLSRPFQD--GAPGSKIIITTRNADAALIMG 350 (475)
Q Consensus 295 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~ilvTtR~~~v~~~~~ 350 (475)
.+.+.|.-++=+||+|+.-+. +.....+++..|.. ...+-.+|+.|.+-.+...++
T Consensus 151 aIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~c 209 (252)
T COG1124 151 AIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMC 209 (252)
T ss_pred HHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHh
Confidence 466777778889999997332 22222333333332 234667888888876665554
No 429
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.60 E-value=0.025 Score=48.53 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=19.7
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 046770 226 VVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
+|.|+|.+|+||||||+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999998874
No 430
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.60 E-value=0.031 Score=50.31 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=21.6
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..++.|.|.+|+||||+|+.+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 368999999999999999999884
No 431
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=94.59 E-value=0.49 Score=45.08 Aligned_cols=59 Identities=8% Similarity=0.062 Sum_probs=38.9
Q ss_pred CceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCC-hHHH-HhcCCCceeeCCCC
Q 046770 302 GKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRN-ADAA-LIMGTVQAYPLKGL 360 (475)
Q Consensus 302 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~-~~~~~~~~~~l~~L 360 (475)
++.=++|+|++...+.+.+..++..+..-..++.+|++|.+ ..+. ...+....+.+.++
T Consensus 94 ~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPME 154 (290)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccch
Confidence 45558899999888888899998888765566666666665 3332 22333345555543
No 432
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=94.59 E-value=0.036 Score=61.28 Aligned_cols=140 Identities=14% Similarity=0.079 Sum_probs=74.1
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcCcccc--cCcCeEEEEEecCCC----CHHH-HHHHHHHHhhcCCCCCCChHHHHHH
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYNDSRVQ--CHFDLKAWTYVSQDF----DIIR-VTKSILRSVAMGIVDHNDLNLLQWK 295 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--~~F~~~~wv~v~~~~----~~~~-~l~~il~~l~~~~~~~~~~~~l~~~ 295 (475)
...-+.|+|.+|.||||+.+.++-....+ ..=+..+++.+.... .... .+...+....... .........
T Consensus 221 ~~~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~---~~~~~~~~~ 297 (824)
T COG5635 221 KYAKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQ---GIAKQLIEA 297 (824)
T ss_pred hhhheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhcc---CCcchhhHH
Confidence 34578999999999999998876432111 112344454443111 1111 1222222222111 111222233
Q ss_pred HHHHhCCceEEEEEECCCCCChhh----HhHhhCcCCCCCCCcEEEEecCChHHHHhcCCCceeeCCCCCHHHHH
Q 046770 296 LKKQLFGKRFLLVLDDVWNENYND----WIDLSRPFQDGAPGSKIIITTRNADAALIMGTVQAYPLKGLSNDDCM 366 (475)
Q Consensus 296 l~~~l~~kr~LlVlDdv~~~~~~~----~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~l~~L~~~~~~ 366 (475)
..+.++..++|+++|.+....... ... ...+...-+.+.+|+|+|....-........+++..+.++...
T Consensus 298 ~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~-i~~f~~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~ 371 (824)
T COG5635 298 HQELLKTGKLLLLLDGLDELEPKNQRALIRE-INKFLQEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQIN 371 (824)
T ss_pred HHHHHhccchhhHhhccchhhhhhHHHHHHH-HHHHhhhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHH
Confidence 367888899999999985432211 111 1222233457899999987655444444555666666665544
No 433
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.57 E-value=0.1 Score=52.02 Aligned_cols=53 Identities=17% Similarity=0.241 Sum_probs=36.6
Q ss_pred ccccccchhHHHHHHHHhcC------CCCCCCCCccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 195 AKVYGRSKEREEIVELLLKE------DGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~------~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..++|.+..++.+..++... ............+.++|++|+|||+||+.+...
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~ 73 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL 73 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45889888888887777430 000000012367899999999999999999874
No 434
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.57 E-value=0.026 Score=48.44 Aligned_cols=21 Identities=43% Similarity=0.705 Sum_probs=19.1
Q ss_pred EEEEccCCCcHHHHHHHHHcC
Q 046770 227 VSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 227 v~I~G~gGiGKTtLA~~v~~~ 247 (475)
|.|+|++|+||||+|+.+...
T Consensus 2 i~l~G~~GsGKstla~~la~~ 22 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKA 22 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 689999999999999999873
No 435
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=94.57 E-value=0.12 Score=47.22 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=19.5
Q ss_pred EEEEEEccCCCcHHHHHHHHH
Q 046770 225 SVVSIIGMGGLGKTTLAQLVY 245 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~ 245 (475)
+++.|+|+.|.||||+.+.+.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~ 51 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVA 51 (216)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 789999999999999999985
No 436
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.55 E-value=0.037 Score=50.35 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=23.7
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.++++|+++|+.|+|||||..++...
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999998874
No 437
>PRK15115 response regulator GlrR; Provisional
Probab=94.53 E-value=0.11 Score=53.32 Aligned_cols=133 Identities=19% Similarity=0.015 Sum_probs=67.7
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHH
Q 046770 196 KVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSI 275 (475)
Q Consensus 196 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~i 275 (475)
.++|....+.++.+...... ..-..|.|.|.+|+|||++|+.+.+...... ..-+.+++... ....+...
T Consensus 135 ~lig~s~~~~~~~~~~~~~a------~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~--~~f~~i~c~~~--~~~~~~~~ 204 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVA------QSDVSVLINGQSGTGKEILAQAIHNASPRAS--KPFIAINCGAL--PEQLLESE 204 (444)
T ss_pred cccccCHHHHHHHHHHHhhc------cCCCeEEEEcCCcchHHHHHHHHHHhcCCCC--CCeEEEeCCCC--CHHHHHHH
Confidence 46777777766666554311 1123567999999999999999987432111 12233333332 12222222
Q ss_pred HHHhhcCCCCCCC-hHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCCC-----------CCcEEEEecCCh
Q 046770 276 LRSVAMGIVDHND-LNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDGA-----------PGSKIIITTRNA 343 (475)
Q Consensus 276 l~~l~~~~~~~~~-~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~~ 343 (475)
+.+...+... ......-+ ......-.|+||++..........+...+..+. ...+||.||...
T Consensus 205 ---lfg~~~~~~~~~~~~~~g~--~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~ 279 (444)
T PRK15115 205 ---LFGHARGAFTGAVSNREGL--FQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD 279 (444)
T ss_pred ---hcCCCcCCCCCCccCCCCc--EEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC
Confidence 1111110000 00000000 001123379999998777666666666554321 145888888754
No 438
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.50 E-value=0.21 Score=48.46 Aligned_cols=84 Identities=18% Similarity=0.281 Sum_probs=47.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecC-CCCHHHHHHHHHHHhhcCC-------CCCCChH-----H
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQ-DFDIIRVTKSILRSVAMGI-------VDHNDLN-----L 291 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~-~~~~~~~l~~il~~l~~~~-------~~~~~~~-----~ 291 (475)
..++|+|..|.|||||.+.+.+... -+......+.. ..++.++....+..-.... .+..... .
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~ 145 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAY 145 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHH
Confidence 4689999999999999999987432 13333344443 3345555555544321111 1111111 1
Q ss_pred HHHHHHHHh--CCceEEEEEECC
Q 046770 292 LQWKLKKQL--FGKRFLLVLDDV 312 (475)
Q Consensus 292 l~~~l~~~l--~~kr~LlVlDdv 312 (475)
..-.+.+++ +++.+||++||+
T Consensus 146 ~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 146 TATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHcCCCeEEEeccc
Confidence 111233333 689999999998
No 439
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=94.50 E-value=0.22 Score=51.32 Aligned_cols=160 Identities=18% Similarity=0.080 Sum_probs=80.6
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHH
Q 046770 196 KVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSI 275 (475)
Q Consensus 196 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~i 275 (475)
.++|......++...+..... .. ..+.|.|..|+||+++|+.+...... .....+-+++... ..+.+...
T Consensus 135 ~lig~s~~~~~v~~~i~~~a~-----~~-~~vli~Ge~GtGK~~~A~~ih~~~~~--~~~~~~~~~c~~~--~~~~~~~~ 204 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRLSR-----SD-ITVLINGESGTGKELVARALHRHSPR--ANGPFIALNMAAI--PKDLIESE 204 (463)
T ss_pred ceeecCHHHHHHHHHHHHHhC-----cC-CeEEEECCCCCCHHHHHHHHHHhCCC--CCCCeEEEeCCCC--CHHHHHHH
Confidence 477777767777666544111 22 35689999999999999999874321 1112223333332 22333333
Q ss_pred HHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCCC-----------CCcEEEEecCChH
Q 046770 276 LRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDGA-----------PGSKIIITTRNAD 344 (475)
Q Consensus 276 l~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~~~ 344 (475)
+ .+...+.-... .............-.|+||++..........+...+..+. .+.+||+||...-
T Consensus 205 l---fg~~~~~~~~~-~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l 280 (463)
T TIGR01818 205 L---FGHEKGAFTGA-NTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNL 280 (463)
T ss_pred h---cCCCCCCCCCc-ccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCH
Confidence 2 11111100000 0000000111223458899998877666667765554321 2458888887542
Q ss_pred HHHh---------c--CCCceeeCCCCC--HHHHHHHH
Q 046770 345 AALI---------M--GTVQAYPLKGLS--NDDCMCLF 369 (475)
Q Consensus 345 v~~~---------~--~~~~~~~l~~L~--~~~~~~lf 369 (475)
.... . -....+.+.||. .+|.-.|+
T Consensus 281 ~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~ 318 (463)
T TIGR01818 281 EALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLA 318 (463)
T ss_pred HHHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHH
Confidence 1100 0 012467778887 44544443
No 440
>PRK05922 type III secretion system ATPase; Validated
Probab=94.49 E-value=0.19 Score=50.70 Aligned_cols=84 Identities=12% Similarity=0.220 Sum_probs=46.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCC-CCHHHHHHHHHHHhhcCCC-----CCC--ChH-----H
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQD-FDIIRVTKSILRSVAMGIV-----DHN--DLN-----L 291 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~l~~il~~l~~~~~-----~~~--~~~-----~ 291 (475)
..++|+|..|+|||||.+.+.+... .+....+.+.+. ....+.+.+.......... ..+ ... .
T Consensus 158 qrigI~G~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~ 233 (434)
T PRK05922 158 QRIGVFSEPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGR 233 (434)
T ss_pred cEEEEECCCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHH
Confidence 4689999999999999999987431 233333334332 2334444444433222211 111 111 1
Q ss_pred HHHHHHHHh--CCceEEEEEECC
Q 046770 292 LQWKLKKQL--FGKRFLLVLDDV 312 (475)
Q Consensus 292 l~~~l~~~l--~~kr~LlVlDdv 312 (475)
..-.+.+++ +|+++|+++||+
T Consensus 234 ~a~tiAEyfrd~G~~VLl~~Dsl 256 (434)
T PRK05922 234 AAMTIAEYFRDQGHRVLFIMDSL 256 (434)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 112234444 589999999999
No 441
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.45 E-value=0.034 Score=47.56 Aligned_cols=24 Identities=38% Similarity=0.617 Sum_probs=21.2
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..++.|+|.+|+||||+.+.+...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~ 27 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKE 27 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Confidence 579999999999999999888763
No 442
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.45 E-value=0.15 Score=51.33 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHc
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
...+|.++|+.|+||||++..++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999988764
No 443
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.44 E-value=0.044 Score=53.68 Aligned_cols=46 Identities=17% Similarity=0.263 Sum_probs=37.0
Q ss_pred cccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 194 EAKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 194 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
=+.++|-++-+..|...+.+ +.+.-|.|.|..|+||||+|+.+++-
T Consensus 16 f~~ivGq~~~k~al~~~~~~--------p~~~~vli~G~~GtGKs~~ar~~~~~ 61 (350)
T CHL00081 16 FTAIVGQEEMKLALILNVID--------PKIGGVMIMGDRGTGKSTTIRALVDL 61 (350)
T ss_pred HHHHhChHHHHHHHHHhccC--------CCCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 35789999888888877766 34556779999999999999998653
No 444
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.43 E-value=0.13 Score=52.02 Aligned_cols=87 Identities=11% Similarity=0.170 Sum_probs=53.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCC-HHHHHHHHHHHhhcCC-------CCCCChH-----H
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFD-IIRVTKSILRSVAMGI-------VDHNDLN-----L 291 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~~l~~il~~l~~~~-------~~~~~~~-----~ 291 (475)
.-++|.|.+|+|||+|+..+..+.. +.+-+.++++-+.+... ..+++..+...-.... .+..... .
T Consensus 139 Qr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~ 217 (449)
T TIGR03305 139 GKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGH 217 (449)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHH
Confidence 3578999999999999999877532 23346788888877653 4555555554311111 0111111 1
Q ss_pred HHHHHHHHh---CCceEEEEEECC
Q 046770 292 LQWKLKKQL---FGKRFLLVLDDV 312 (475)
Q Consensus 292 l~~~l~~~l---~~kr~LlVlDdv 312 (475)
..-.+.+++ +|+++|+++||+
T Consensus 218 ~a~tiAEyfrd~~G~~VLl~~Dsl 241 (449)
T TIGR03305 218 TALTMAEYFRDDEKQDVLLLIDNI 241 (449)
T ss_pred HHHHHHHHHHHhcCCceEEEecCh
Confidence 122344454 478999999998
No 445
>PRK14527 adenylate kinase; Provisional
Probab=94.40 E-value=0.034 Score=49.89 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=21.9
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
...++.|+|++|+||||+|+.+.+.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~ 29 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQE 29 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999863
No 446
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.40 E-value=0.041 Score=48.93 Aligned_cols=44 Identities=16% Similarity=0.105 Sum_probs=29.2
Q ss_pred EEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHH
Q 046770 227 VSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKS 274 (475)
Q Consensus 227 v~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~ 274 (475)
+.|.|++|+|||+|+.++..... +. =..+.|++...+ ..++...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~-~~-g~~v~~~s~e~~--~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL-AR-GEPGLYVTLEES--PEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH-HC-CCcEEEEECCCC--HHHHHHH
Confidence 67999999999999998866421 11 245677776553 4444433
No 447
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.39 E-value=0.18 Score=50.74 Aligned_cols=84 Identities=19% Similarity=0.297 Sum_probs=46.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCC-CHHHHHHHHHHHhhcCC-------CCCCChH-----H
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDF-DIIRVTKSILRSVAMGI-------VDHNDLN-----L 291 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~l~~il~~l~~~~-------~~~~~~~-----~ 291 (475)
..++|+|..|.|||||++.+.+... .+..+...+.+.. .+.++...++..-.... .+..... .
T Consensus 138 q~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~~ 213 (411)
T TIGR03496 138 QRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAAF 213 (411)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHH
Confidence 4689999999999999998887432 2333444555533 34444444433211110 1111111 1
Q ss_pred HHHHHHHHh--CCceEEEEEECC
Q 046770 292 LQWKLKKQL--FGKRFLLVLDDV 312 (475)
Q Consensus 292 l~~~l~~~l--~~kr~LlVlDdv 312 (475)
..-.+.+++ +++++||++||+
T Consensus 214 ~a~tiAEyfr~~G~~Vll~~Dsl 236 (411)
T TIGR03496 214 YATAIAEYFRDQGKDVLLLMDSL 236 (411)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCh
Confidence 111233343 689999999998
No 448
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.39 E-value=0.3 Score=45.48 Aligned_cols=75 Identities=17% Similarity=0.182 Sum_probs=44.7
Q ss_pred HHHHhCCceEEEEEECCC-CCChhhHhHhhCcCC--CCCCCcEEEEecCC-hHHHHhcCCCceeeCCCCCHHHHHHHHh
Q 046770 296 LKKQLFGKRFLLVLDDVW-NENYNDWIDLSRPFQ--DGAPGSKIIITTRN-ADAALIMGTVQAYPLKGLSNDDCMCLFT 370 (475)
Q Consensus 296 l~~~l~~kr~LlVlDdv~-~~~~~~~~~l~~~l~--~~~~gs~ilvTtR~-~~v~~~~~~~~~~~l~~L~~~~~~~lf~ 370 (475)
|...|-.++-++.||+.- ..+...-..++.++. +...++.|++||.+ .+++.+|...-.+....+=.+....=|.
T Consensus 167 LaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~ 245 (325)
T COG4586 167 LAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQ 245 (325)
T ss_pred HHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHH
Confidence 444444667788999872 122334445555554 33468999999998 6777776655555555554443333333
No 449
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.39 E-value=0.084 Score=47.30 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=20.3
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 046770 226 VVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
+|+|.|+.|+||||+++.+.+.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~ 23 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAER 23 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 450
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.38 E-value=0.2 Score=51.22 Aligned_cols=82 Identities=13% Similarity=0.103 Sum_probs=47.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCC-----CCCCChHHHHHHHHH
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGI-----VDHNDLNLLQWKLKK 298 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~-----~~~~~~~~l~~~l~~ 298 (475)
-.++.|.|.+|+|||||+.++..+.... -..++|++..+. ...+... ...++... ....+.+.+...+.+
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~--g~kvlYvs~EEs--~~qi~~r-a~rlg~~~~~l~~~~e~~~~~I~~~i~~ 168 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKN--QMKVLYVSGEES--LQQIKMR-AIRLGLPEPNLYVLSETNWEQICANIEE 168 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEECcCC--HHHHHHH-HHHcCCChHHeEEcCCCCHHHHHHHHHh
Confidence 3789999999999999999987643211 134677776543 3333221 12222111 123344444444432
Q ss_pred HhCCceEEEEEECCC
Q 046770 299 QLFGKRFLLVLDDVW 313 (475)
Q Consensus 299 ~l~~kr~LlVlDdv~ 313 (475)
.+.-++|+|.+.
T Consensus 169 ---~~~~~vVIDSIq 180 (454)
T TIGR00416 169 ---ENPQACVIDSIQ 180 (454)
T ss_pred ---cCCcEEEEecch
Confidence 345689999984
No 451
>PRK13975 thymidylate kinase; Provisional
Probab=94.37 E-value=0.034 Score=50.00 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDS 248 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~ 248 (475)
.+|.|.|+.|+||||+|+.+.+..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999843
No 452
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.37 E-value=0.1 Score=45.75 Aligned_cols=80 Identities=15% Similarity=0.081 Sum_probs=43.5
Q ss_pred EEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCC---CCChHHHHHHHHHHhCC
Q 046770 226 VVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVD---HNDLNLLQWKLKKQLFG 302 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~---~~~~~~l~~~l~~~l~~ 302 (475)
++.|.|.+|+||||+|..+..... ....++.....++. +....+-......... -.....+...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~-----~~~~~iat~~~~~~-e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG-----LQVLYIATAQPFDD-EMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC-----CCcEeCcCCCCChH-HHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 689999999999999999876321 12344444444433 4444444333322211 11112344444443332
Q ss_pred ceEEEEEECC
Q 046770 303 KRFLLVLDDV 312 (475)
Q Consensus 303 kr~LlVlDdv 312 (475)
.-++++|.+
T Consensus 77 -~~~VlID~L 85 (170)
T PRK05800 77 -GRCVLVDCL 85 (170)
T ss_pred -CCEEEehhH
Confidence 237888887
No 453
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.34 E-value=0.067 Score=56.74 Aligned_cols=74 Identities=16% Similarity=0.070 Sum_probs=51.6
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKS 274 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~ 274 (475)
..++|.++.++.|...+.. . +.+.++|++|+||||+|+.+.+.. ...+++..+|..- ...+...+++.
T Consensus 31 ~~vigq~~a~~~L~~~~~~--------~--~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~n-p~~~~~~~~~~ 98 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQ--------R--RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPN-PEDPNNPKIRT 98 (637)
T ss_pred HHcCChHHHHHHHHHHHHh--------C--CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeC-CCcchHHHHHH
Confidence 4688988888888776654 2 368899999999999999998742 2334567777654 33455566666
Q ss_pred HHHHhh
Q 046770 275 ILRSVA 280 (475)
Q Consensus 275 il~~l~ 280 (475)
+..+++
T Consensus 99 v~~~~G 104 (637)
T PRK13765 99 VPAGKG 104 (637)
T ss_pred HHHhcC
Confidence 665443
No 454
>PLN02796 D-glycerate 3-kinase
Probab=94.33 E-value=0.22 Score=48.50 Aligned_cols=25 Identities=32% Similarity=0.198 Sum_probs=22.4
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..-+|+|.|..|+|||||++.+...
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~l 123 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYL 123 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4578999999999999999999874
No 455
>CHL00206 ycf2 Ycf2; Provisional
Probab=94.32 E-value=0.36 Score=56.46 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.2
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcCc
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYNDS 248 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~~ 248 (475)
.+-|.++|++|+|||.||++++.+.
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhc
Confidence 4568899999999999999999864
No 456
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.31 E-value=1 Score=41.53 Aligned_cols=51 Identities=25% Similarity=0.234 Sum_probs=37.0
Q ss_pred ccccccchhHHHHHHHHhcCCCCC------CCCCccEEEEEEccCCCcHHHHHHHHHc
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTS------HNNNHFSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~------~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
+++=|-++.+++|++.+.- +... -.-..++-|..+|++|.|||-+|+..+.
T Consensus 171 sDiGGldkQIqELvEAiVL-pmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAa 227 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVL-PMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAA 227 (424)
T ss_pred cccccHHHHHHHHHHHhcc-ccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHH
Confidence 3577889999999987743 1100 0013346688999999999999999887
No 457
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.30 E-value=0.035 Score=48.90 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..|.|+|+.|.|||||++.+.+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHH
Confidence 46899999999999999999874
No 458
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=94.28 E-value=0.18 Score=50.83 Aligned_cols=86 Identities=19% Similarity=0.207 Sum_probs=49.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCC-------CCCCChH-----HH
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGI-------VDHNDLN-----LL 292 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~-------~~~~~~~-----~l 292 (475)
..++|+|..|.|||||++.++..... ....+...-.+...+.+++...+..-+... .+..... ..
T Consensus 157 qri~I~G~sG~GKTtLl~~Ia~~~~~---~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~ 233 (432)
T PRK06793 157 QKIGIFAGSGVGKSTLLGMIAKNAKA---DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKL 233 (432)
T ss_pred cEEEEECCCCCChHHHHHHHhccCCC---CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHHH
Confidence 47799999999999999999875422 122332222333566666665555422111 1111111 11
Q ss_pred HHHHHHHh--CCceEEEEEECCC
Q 046770 293 QWKLKKQL--FGKRFLLVLDDVW 313 (475)
Q Consensus 293 ~~~l~~~l--~~kr~LlVlDdv~ 313 (475)
...+.+++ ++++.||++||+-
T Consensus 234 a~~iAEyfr~~G~~VLlilDslT 256 (432)
T PRK06793 234 ATSIAEYFRDQGNNVLLMMDSVT 256 (432)
T ss_pred HHHHHHHHHHcCCcEEEEecchH
Confidence 12233333 5899999999983
No 459
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.28 E-value=0.29 Score=50.90 Aligned_cols=124 Identities=25% Similarity=0.330 Sum_probs=66.2
Q ss_pred EEEEEEccCCCcHHH-HHHHHHcCcccccCcCeEEEEEecCCCC--HHHHHHHHHHHhhcCCC----------CC-----
Q 046770 225 SVVSIIGMGGLGKTT-LAQLVYNDSRVQCHFDLKAWTYVSQDFD--IIRVTKSILRSVAMGIV----------DH----- 286 (475)
Q Consensus 225 ~vv~I~G~gGiGKTt-LA~~v~~~~~~~~~F~~~~wv~v~~~~~--~~~~l~~il~~l~~~~~----------~~----- 286 (475)
.||.|+|..|+|||| |++.+|.+- |...--|.+.++-- ...+.+.+.++++.... +.
T Consensus 372 ~vvvivgETGSGKTTQl~QyL~edG-----Y~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~~T 446 (1042)
T KOG0924|consen 372 QVVVIVGETGSGKTTQLAQYLYEDG-----YADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSEDT 446 (1042)
T ss_pred cEEEEEecCCCCchhhhHHHHHhcc-----cccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCCce
Confidence 699999999999985 777777742 22222344555443 34556666666644321 11
Q ss_pred -----CChHHHHHHHHHHhCCceEEEEEECCCCCCh--hhHhHhhCcCCCCCCCcEEEEecCC---hHHHHhcCCCc
Q 046770 287 -----NDLNLLQWKLKKQLFGKRFLLVLDDVWNENY--NDWIDLSRPFQDGAPGSKIIITTRN---ADAALIMGTVQ 353 (475)
Q Consensus 287 -----~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~--~~~~~l~~~l~~~~~gs~ilvTtR~---~~v~~~~~~~~ 353 (475)
.+--.+.+.|.+..-.|=-.||+|.+++.+. +-.-.++.........-++||||-. ...+...+...
T Consensus 447 ~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm~a~kf~nfFgn~p 523 (1042)
T KOG0924|consen 447 KIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATMDAQKFSNFFGNCP 523 (1042)
T ss_pred eEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeeccccHHHHHHHhCCCc
Confidence 1111222333333333445889999976432 1122222222223357799999875 34445555333
No 460
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.27 E-value=0.036 Score=51.23 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=23.1
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHcCc
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYNDS 248 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 248 (475)
++..+|.++||+|+||||..+.++.+.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHH
Confidence 455678899999999999999998854
No 461
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.25 E-value=0.033 Score=46.65 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=20.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
+-|.|.|.+|+|||||+..++.
T Consensus 8 PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHH
Confidence 4578999999999999999986
No 462
>PRK06761 hypothetical protein; Provisional
Probab=94.24 E-value=0.072 Score=50.53 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDS 248 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~ 248 (475)
++|.|.|++|+||||+++.+++..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L 27 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDIL 27 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 589999999999999999999854
No 463
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.23 E-value=0.039 Score=50.65 Aligned_cols=22 Identities=41% Similarity=0.677 Sum_probs=20.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
-.|+|+|++|+|||||.+.++-
T Consensus 30 EfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999965
No 464
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.19 E-value=0.032 Score=48.52 Aligned_cols=20 Identities=35% Similarity=0.400 Sum_probs=16.9
Q ss_pred EEEEccCCCcHHHHHHHHHc
Q 046770 227 VSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 227 v~I~G~gGiGKTtLA~~v~~ 246 (475)
|+|+|..|+|||||++.+..
T Consensus 2 I~i~G~~stGKTTL~~~L~~ 21 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAA 21 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999987
No 465
>PLN02200 adenylate kinase family protein
Probab=94.19 E-value=0.041 Score=51.02 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=21.4
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHc
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
...+|.|.|++|+||||+|+.+..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999886
No 466
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.18 E-value=0.068 Score=48.49 Aligned_cols=42 Identities=26% Similarity=0.408 Sum_probs=26.8
Q ss_pred EEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCH
Q 046770 226 VVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDI 268 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~ 268 (475)
.|+|+|-||+||||+|..+......+..|+ +.-|....++++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~-VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYN-VLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCce-EEEEeCCCCCCh
Confidence 589999999999999988544322222233 444555555553
No 467
>PRK13948 shikimate kinase; Provisional
Probab=94.18 E-value=0.042 Score=48.72 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=22.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..+.|.++|+.|+||||+++.+.+.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~ 33 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRA 33 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4467899999999999999999873
No 468
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=94.18 E-value=0.19 Score=51.01 Aligned_cols=85 Identities=16% Similarity=0.159 Sum_probs=45.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCC-------CCCCChH-----HH
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGI-------VDHNDLN-----LL 292 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~-------~~~~~~~-----~l 292 (475)
..++|+|..|+|||||++.+...... -...+++.--...++.++....+..-.... .+..... ..
T Consensus 159 q~i~I~G~sG~GKStLl~~I~~~~~~---~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~~~~~ 235 (438)
T PRK07721 159 QRVGIFAGSGVGKSTLMGMIARNTSA---DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKGAYT 235 (438)
T ss_pred cEEEEECCCCCCHHHHHHHHhcccCC---CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHHHHHH
Confidence 58899999999999999988874322 123333332333344444443222111100 0111111 11
Q ss_pred HHHHHHHh--CCceEEEEEECC
Q 046770 293 QWKLKKQL--FGKRFLLVLDDV 312 (475)
Q Consensus 293 ~~~l~~~l--~~kr~LlVlDdv 312 (475)
.-.+.+++ +|+++||++||+
T Consensus 236 a~~iAEyfr~~g~~Vll~~Dsl 257 (438)
T PRK07721 236 ATAIAEYFRDQGLNVMLMMDSV 257 (438)
T ss_pred HHHHHHHHHHCCCcEEEEEeCh
Confidence 11233444 689999999998
No 469
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=94.17 E-value=0.039 Score=48.79 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=20.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.++.|+|+.|.|||||++.++..
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~ 26 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAAL 26 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999874
No 470
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.16 E-value=0.22 Score=50.72 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=32.3
Q ss_pred chhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 201 SKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 201 ~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.+-+.++..||..... ...+.+.+++.|+|++|+||||.++.+...
T Consensus 88 kkKI~eVk~WL~~~~~-~~~~l~~~iLLltGPsGcGKSTtvkvLske 133 (634)
T KOG1970|consen 88 KKKISEVKQWLKQVAE-FTPKLGSRILLLTGPSGCGKSTTVKVLSKE 133 (634)
T ss_pred HHhHHHHHHHHHHHHH-hccCCCceEEEEeCCCCCCchhHHHHHHHh
Confidence 4457788888871110 011145579999999999999999998863
No 471
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.15 E-value=0.04 Score=46.22 Aligned_cols=23 Identities=35% Similarity=0.535 Sum_probs=20.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.+++|+|..|+|||||.+.++..
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEEccCCCccccceeeeccc
Confidence 48999999999999999998774
No 472
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=94.15 E-value=0.11 Score=46.63 Aligned_cols=24 Identities=38% Similarity=0.437 Sum_probs=21.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDS 248 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~ 248 (475)
.+|+|.|..|+||||+++.+.+..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l 27 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLL 27 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998743
No 473
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.15 E-value=0.25 Score=52.35 Aligned_cols=115 Identities=17% Similarity=0.113 Sum_probs=57.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCccc-ccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCC-CC--CCChHHHHHHHHHHh
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRV-QCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGI-VD--HNDLNLLQWKLKKQL 300 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~-~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~-~~--~~~~~~l~~~l~~~l 300 (475)
++..|.|.+|.||||++..+...... ...-...+.+.....--...+...+-..+..-. .+ ..........+.+.|
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrlL 247 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRLL 247 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHHh
Confidence 58899999999999999888763211 111123455544444333344333332221100 00 000000112233333
Q ss_pred C------------Cce---EEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCC
Q 046770 301 F------------GKR---FLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRN 342 (475)
Q Consensus 301 ~------------~kr---~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 342 (475)
. +.+ =++|+|++--.+......+...++ .++++|+---.
T Consensus 248 g~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~---~~~rlIlvGD~ 301 (615)
T PRK10875 248 GAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALP---PHARVIFLGDR 301 (615)
T ss_pred CcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcc---cCCEEEEecch
Confidence 1 111 289999984444444555666654 46788876554
No 474
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=94.14 E-value=0.05 Score=47.11 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=22.7
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
++..+|-++|.+|.||||+|..++..
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~ 46 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEK 46 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHH
Confidence 44579999999999999999999873
No 475
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=94.12 E-value=0.44 Score=49.26 Aligned_cols=23 Identities=43% Similarity=0.745 Sum_probs=21.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.+++|+|+.|.|||||++.++..
T Consensus 51 EivgIiGpNGSGKSTLLkiLaGL 73 (549)
T PRK13545 51 EIVGIIGLNGSGKSTLSNLIAGV 73 (549)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 48999999999999999999874
No 476
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=94.10 E-value=0.054 Score=52.87 Aligned_cols=45 Identities=18% Similarity=0.268 Sum_probs=33.9
Q ss_pred cccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHc
Q 046770 194 EAKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 194 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
-..++|.+..++.+.-.+.. .+..-+.+.|.+|+||||+|+.+..
T Consensus 7 f~~i~Gq~~~~~~l~~~~~~--------~~~~~vLl~G~pG~gKT~lar~la~ 51 (334)
T PRK13407 7 FSAIVGQEEMKQAMVLTAID--------PGIGGVLVFGDRGTGKSTAVRALAA 51 (334)
T ss_pred HHHhCCHHHHHHHHHHHHhc--------cCCCcEEEEcCCCCCHHHHHHHHHH
Confidence 34689998888877755443 1123488999999999999999865
No 477
>PRK04182 cytidylate kinase; Provisional
Probab=94.07 E-value=0.041 Score=48.56 Aligned_cols=22 Identities=41% Similarity=0.644 Sum_probs=20.3
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 046770 226 VVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
+|.|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~ 23 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 478
>PLN02348 phosphoribulokinase
Probab=94.05 E-value=0.065 Score=52.93 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=23.1
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
+..-+|+|.|.+|+||||+|+.+.+.
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~ 72 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSV 72 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999873
No 479
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.05 E-value=0.069 Score=55.30 Aligned_cols=86 Identities=14% Similarity=0.127 Sum_probs=52.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCC---------------CCCC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGI---------------VDHN 287 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~---------------~~~~ 287 (475)
.-+++.|.|++|+|||||+.++.... ...=+.+++++..+ +..++...+ +.++... +...
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~--~~~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~~ 336 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENA--CANKERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPESA 336 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhCCcEEEEEcccccC
Confidence 34789999999999999999987743 22224566766555 344444443 2332111 1122
Q ss_pred ChHHHHHHHHHHhCC-ceEEEEEECCC
Q 046770 288 DLNLLQWKLKKQLFG-KRFLLVLDDVW 313 (475)
Q Consensus 288 ~~~~l~~~l~~~l~~-kr~LlVlDdv~ 313 (475)
..+.....+.+.+.. +.-++|+|.+.
T Consensus 337 ~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 337 GLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred ChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 335555666666533 45589999983
No 480
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=94.05 E-value=0.042 Score=48.06 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=20.2
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 046770 226 VVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
+|.|.|+.|+||||+|+.+.+.
T Consensus 2 iI~i~G~~GSGKstia~~la~~ 23 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEK 23 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999873
No 481
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.03 E-value=0.25 Score=46.30 Aligned_cols=50 Identities=28% Similarity=0.203 Sum_probs=35.8
Q ss_pred cccccchhHHHHHHHHhcCC-------CCCCCCCccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 196 KVYGRSKEREEIVELLLKED-------GTSHNNNHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 196 ~~vGR~~e~~~l~~~L~~~~-------~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
++=|-+..+++|.+...-.- +.+- ..++-|.++|.+|.|||-||++|+|.
T Consensus 186 diGGle~QiQEiKEsvELPLthPE~YeemGi--kpPKGVIlyG~PGTGKTLLAKAVANq 242 (440)
T KOG0726|consen 186 DIGGLESQIQEIKESVELPLTHPEYYEEMGI--KPPKGVILYGEPGTGKTLLAKAVANQ 242 (440)
T ss_pred ccccHHHHHHHHHHhhcCCCCCHHHHHHcCC--CCCCeeEEeCCCCCchhHHHHHHhcc
Confidence 46678888888887653210 0111 33456789999999999999999994
No 482
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=94.02 E-value=0.16 Score=51.14 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..++|+|..|+|||||++.+...
T Consensus 156 Q~igI~G~sGaGKSTLl~~I~g~ 178 (434)
T PRK07196 156 QRVGLMAGSGVGKSVLLGMITRY 178 (434)
T ss_pred eEEEEECCCCCCccHHHHHHhcc
Confidence 57899999999999999998874
No 483
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=94.02 E-value=0.21 Score=50.56 Aligned_cols=84 Identities=17% Similarity=0.247 Sum_probs=47.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCC-CHHHHHHHHHHHhhcCC-------CCCCChHH-----
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDF-DIIRVTKSILRSVAMGI-------VDHNDLNL----- 291 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~l~~il~~l~~~~-------~~~~~~~~----- 291 (475)
..++|+|..|+|||||++.+.... ..+..+...+.... ...++...++..-.... .+......
T Consensus 169 qrigI~G~sG~GKSTLl~~I~g~~----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~~ 244 (451)
T PRK05688 169 QRLGLFAGTGVGKSVLLGMMTRFT----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAM 244 (451)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHHH
Confidence 468999999999999999998742 12333444444433 34444444443321111 11111111
Q ss_pred HHHHHHHHh--CCceEEEEEECC
Q 046770 292 LQWKLKKQL--FGKRFLLVLDDV 312 (475)
Q Consensus 292 l~~~l~~~l--~~kr~LlVlDdv 312 (475)
..-.+.+++ +|+++||++||+
T Consensus 245 ~a~aiAEyfrd~G~~VLl~~Dsl 267 (451)
T PRK05688 245 YCTRIAEYFRDKGKNVLLLMDSL 267 (451)
T ss_pred HHHHHHHHHHHCCCCEEEEecch
Confidence 111233444 689999999998
No 484
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.01 E-value=0.037 Score=47.75 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=20.4
Q ss_pred EEEEEccCCCcHHHHHHHHHcCc
Q 046770 226 VVSIIGMGGLGKTTLAQLVYNDS 248 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~~ 248 (475)
|+.|+|+.|+|||||+..+....
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998843
No 485
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.00 E-value=0.073 Score=52.08 Aligned_cols=44 Identities=16% Similarity=0.300 Sum_probs=34.4
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHc
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
..++|-+..+..|.-.+.+ +...-+.|.|..|+|||||++.+..
T Consensus 4 ~~ivgq~~~~~al~~~~~~--------~~~g~vli~G~~G~gKttl~r~~~~ 47 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVID--------PKIGGVMVMGDRGTGKSTAVRALAA 47 (337)
T ss_pred cccccHHHHHHHHHHHhcC--------CCCCeEEEEcCCCCCHHHHHHHHHH
Confidence 3578988888887666655 2334577999999999999999975
No 486
>PRK13946 shikimate kinase; Provisional
Probab=93.99 E-value=0.042 Score=48.97 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=21.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
+.|.++|++|+||||+++.+.+.
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~ 33 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATM 33 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999983
No 487
>PRK14532 adenylate kinase; Provisional
Probab=93.98 E-value=0.04 Score=49.18 Aligned_cols=21 Identities=24% Similarity=0.339 Sum_probs=19.0
Q ss_pred EEEEccCCCcHHHHHHHHHcC
Q 046770 227 VSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 227 v~I~G~gGiGKTtLA~~v~~~ 247 (475)
|.|.|++|+||||+|+.+...
T Consensus 3 i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999873
No 488
>PRK08356 hypothetical protein; Provisional
Probab=93.96 E-value=0.055 Score=48.69 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=19.3
Q ss_pred EEEEEEccCCCcHHHHHHHHH
Q 046770 225 SVVSIIGMGGLGKTTLAQLVY 245 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~ 245 (475)
.+|+|+|++|+||||+|+.+.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999994
No 489
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.93 E-value=0.23 Score=49.97 Aligned_cols=84 Identities=20% Similarity=0.321 Sum_probs=46.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCC-CHHHHHHHHHHHhhcCC-------CCCCChH-----H
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDF-DIIRVTKSILRSVAMGI-------VDHNDLN-----L 291 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~l~~il~~l~~~~-------~~~~~~~-----~ 291 (475)
..++|+|..|+|||||++.+.+.... +..+...+.+.. ...+++...+.+-.... .+..... .
T Consensus 138 qri~I~G~sG~GKTtLl~~i~~~~~~----~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~~~~ 213 (413)
T TIGR03497 138 QRVGIFAGSGVGKSTLLGMIARNAKA----DINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKAAF 213 (413)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC----CeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHHH
Confidence 57899999999999999988874321 222223344333 34445444443311110 0111111 1
Q ss_pred HHHHHHHHh--CCceEEEEEECC
Q 046770 292 LQWKLKKQL--FGKRFLLVLDDV 312 (475)
Q Consensus 292 l~~~l~~~l--~~kr~LlVlDdv 312 (475)
..-.+.+++ +++.+||++||+
T Consensus 214 ~a~tiAEyfr~~G~~Vll~~Dsl 236 (413)
T TIGR03497 214 TATAIAEYFRDQGKDVLLMMDSV 236 (413)
T ss_pred HHHHHHHHHHHCCCCEEEEEcCc
Confidence 112233444 589999999998
No 490
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=93.93 E-value=0.18 Score=50.82 Aligned_cols=87 Identities=16% Similarity=0.237 Sum_probs=53.2
Q ss_pred EEEEEccCCCcHHHHHHHHHcCccccc--CcC---------eEEEEEecCCCCHHHHHHHHHHHhh-cCC-------CCC
Q 046770 226 VVSIIGMGGLGKTTLAQLVYNDSRVQC--HFD---------LKAWTYVSQDFDIIRVTKSILRSVA-MGI-------VDH 286 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~~~~~~--~F~---------~~~wv~v~~~~~~~~~l~~il~~l~-~~~-------~~~ 286 (475)
-++|.|..|+|||||+..+.++..... ..| .++++.+.+.....+.+...+..-+ ... .+.
T Consensus 143 RigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd~ 222 (466)
T TIGR01040 143 KIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLAND 222 (466)
T ss_pred eeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCCC
Confidence 578999999999999999887543100 012 5677778877666666666665543 111 011
Q ss_pred CChHH-----HHHHHHHHh---CCceEEEEEECC
Q 046770 287 NDLNL-----LQWKLKKQL---FGKRFLLVLDDV 312 (475)
Q Consensus 287 ~~~~~-----l~~~l~~~l---~~kr~LlVlDdv 312 (475)
..... ..-.+.+++ +|+++|+++||+
T Consensus 223 p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~Dsl 256 (466)
T TIGR01040 223 PTIERIITPRLALTTAEYLAYQCEKHVLVILTDM 256 (466)
T ss_pred CHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccCh
Confidence 11111 111244444 478999999999
No 491
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.93 E-value=0.041 Score=49.29 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=19.2
Q ss_pred EEEEccCCCcHHHHHHHHHcC
Q 046770 227 VSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 227 v~I~G~gGiGKTtLA~~v~~~ 247 (475)
|.|.|++|+||||+|+.+...
T Consensus 2 I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999873
No 492
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=93.92 E-value=0.44 Score=51.88 Aligned_cols=22 Identities=45% Similarity=0.610 Sum_probs=20.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
..++|+|..|+|||||++.+..
T Consensus 492 ~~iaIvG~sGsGKSTLlklL~g 513 (694)
T TIGR03375 492 EKVAIIGRIGSGKSTLLKLLLG 513 (694)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999865
No 493
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=93.92 E-value=0.39 Score=48.59 Aligned_cols=84 Identities=19% Similarity=0.306 Sum_probs=46.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecC-CCCHHHHHHHHHHHhhcCCC-------CCCChH-----H
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQ-DFDIIRVTKSILRSVAMGIV-------DHNDLN-----L 291 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~-~~~~~~~l~~il~~l~~~~~-------~~~~~~-----~ 291 (475)
..++|.|..|+|||||.+.+..... .+....+.+.. ...+.+...+.+........ +..... .
T Consensus 146 q~~~I~G~sG~GKStLl~~I~~~~~----~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~~~~~ 221 (422)
T TIGR02546 146 QRIGIFAGAGVGKSTLLGMIARGAS----ADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLKAAY 221 (422)
T ss_pred CEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHHHHHH
Confidence 4779999999999999999987432 23333344443 33444554444332211110 111111 1
Q ss_pred HHHHHHHHh--CCceEEEEEECC
Q 046770 292 LQWKLKKQL--FGKRFLLVLDDV 312 (475)
Q Consensus 292 l~~~l~~~l--~~kr~LlVlDdv 312 (475)
..-.+.+++ ++++.|+++|++
T Consensus 222 ~a~~~AE~f~~~g~~Vl~~~Dsl 244 (422)
T TIGR02546 222 TATAIAEYFRDQGKRVLLMMDSL 244 (422)
T ss_pred HHHHHHHHHHHCCCcEEEEEeCc
Confidence 111233333 578999999999
No 494
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.91 E-value=0.066 Score=38.01 Aligned_cols=20 Identities=40% Similarity=0.526 Sum_probs=17.6
Q ss_pred EEEEEccCCCcHHHHHHHHH
Q 046770 226 VVSIIGMGGLGKTTLAQLVY 245 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~ 245 (475)
+..|+|..|+|||||...+.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999996653
No 495
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.88 E-value=0.037 Score=51.93 Aligned_cols=22 Identities=23% Similarity=0.576 Sum_probs=19.5
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 046770 226 VVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.|.++|++|+||||+|+.+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999999874
No 496
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=93.85 E-value=0.15 Score=52.28 Aligned_cols=134 Identities=17% Similarity=0.076 Sum_probs=68.7
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHH
Q 046770 196 KVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSI 275 (475)
Q Consensus 196 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~i 275 (475)
.++|....+.++...+..... ... -|.|.|..|+||+++|+.+....... . ..-+.+++.... .+.+..
T Consensus 140 ~lig~s~~~~~l~~~i~~~a~-----~~~-~vli~Ge~GtGK~~lA~~ih~~s~~~-~-~~~v~v~c~~~~--~~~~~~- 208 (445)
T TIGR02915 140 GLITSSPGMQKICRTIEKIAP-----SDI-TVLLLGESGTGKEVLARALHQLSDRK-D-KRFVAINCAAIP--ENLLES- 208 (445)
T ss_pred ceeecCHHHHHHHHHHHHHhC-----CCC-CEEEECCCCcCHHHHHHHHHHhCCcC-C-CCeEEEECCCCC--hHHHHH-
Confidence 477887777777776654111 223 35699999999999999998642111 1 122344444432 122222
Q ss_pred HHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCCC-----------CCcEEEEecCCh
Q 046770 276 LRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDGA-----------PGSKIIITTRNA 343 (475)
Q Consensus 276 l~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~~ 343 (475)
.+.+...+.-... .............=.|+||++..........+...+..+. ...+||.||...
T Consensus 209 --~lfg~~~~~~~~~-~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~ 284 (445)
T TIGR02915 209 --ELFGYEKGAFTGA-VKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQD 284 (445)
T ss_pred --HhcCCCCCCcCCC-ccCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCC
Confidence 2222111100000 0000000001223468899998776666666655554221 245888888764
No 497
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=93.84 E-value=0.24 Score=52.80 Aligned_cols=22 Identities=41% Similarity=0.643 Sum_probs=20.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
..++|+|..|.|||||++.+..
T Consensus 362 ~~v~IvG~sGsGKSTLl~lL~g 383 (588)
T PRK13657 362 QTVAIVGPTGAGKSTLINLLQR 383 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999865
No 498
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=93.83 E-value=0.16 Score=51.70 Aligned_cols=87 Identities=15% Similarity=0.153 Sum_probs=51.2
Q ss_pred EEEEEccCCCcHHHHHHHHHcCcccccCc--CeEEEEEecCCC-CHHHHHHHHHHHhhcCCC-----CCCC--hHH----
Q 046770 226 VVSIIGMGGLGKTTLAQLVYNDSRVQCHF--DLKAWTYVSQDF-DIIRVTKSILRSVAMGIV-----DHND--LNL---- 291 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~v~~~~-~~~~~l~~il~~l~~~~~-----~~~~--~~~---- 291 (475)
-++|.|..|+|||||+..+.+.......+ ..++++.+.+.. .+.+++..++..-..... ..++ ...
T Consensus 143 R~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a~ 222 (458)
T TIGR01041 143 KLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVTP 222 (458)
T ss_pred EEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 57899999999999999998854332111 156677776654 445566655533211110 1111 111
Q ss_pred -HHHHHHHHh---CCceEEEEEECC
Q 046770 292 -LQWKLKKQL---FGKRFLLVLDDV 312 (475)
Q Consensus 292 -l~~~l~~~l---~~kr~LlVlDdv 312 (475)
..-.+.+++ +|+++||++||+
T Consensus 223 ~~a~tiAEyfr~d~G~~VLli~Dsl 247 (458)
T TIGR01041 223 RMALTAAEYLAFEKDMHVLVILTDM 247 (458)
T ss_pred HHHHHHHHHHHHccCCcEEEEEcCh
Confidence 111244444 478999999998
No 499
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=93.83 E-value=3.3 Score=39.62 Aligned_cols=70 Identities=16% Similarity=0.182 Sum_probs=47.8
Q ss_pred CCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCCh-HHH-HhcCCCceeeCCCCCHHHHHHHHhh
Q 046770 301 FGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNA-DAA-LIMGTVQAYPLKGLSNDDCMCLFTQ 371 (475)
Q Consensus 301 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~-~~~~~~~~~~l~~L~~~~~~~lf~~ 371 (475)
.+++=++||||+...+......++..+..-..++.+|++|.+. .+. ...+....+++.+ +.++..+.+..
T Consensus 102 ~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 102 EGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred cCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 3556699999998888888888988887655667777766553 332 2233446677766 67776666653
No 500
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.82 E-value=0.56 Score=40.64 Aligned_cols=83 Identities=18% Similarity=0.190 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHhhcCCC------CCCChHHHHHHHHHHhCCceEEEEEECCC-CCChhhHh---HhhCcCCCCCCCcEE
Q 046770 267 DIIRVTKSILRSVAMGIV------DHNDLNLLQWKLKKQLFGKRFLLVLDDVW-NENYNDWI---DLSRPFQDGAPGSKI 336 (475)
Q Consensus 267 ~~~~~l~~il~~l~~~~~------~~~~~~~l~~~l~~~l~~kr~LlVlDdv~-~~~~~~~~---~l~~~l~~~~~gs~i 336 (475)
+.....+..+.+++.... .-..-++..-.|.+.+...+-+++-|+-- +.+...-+ +++-.+ ....|+.+
T Consensus 122 ~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~l-nre~G~Tl 200 (228)
T COG4181 122 DSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFAL-NRERGTTL 200 (228)
T ss_pred cHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHH-hhhcCceE
Confidence 445556777777765431 12223344446778888888888888752 22222223 333222 33468899
Q ss_pred EEecCChHHHHhcC
Q 046770 337 IITTRNADAALIMG 350 (475)
Q Consensus 337 lvTtR~~~v~~~~~ 350 (475)
++.|.++.++..|.
T Consensus 201 VlVTHD~~LA~Rc~ 214 (228)
T COG4181 201 VLVTHDPQLAARCD 214 (228)
T ss_pred EEEeCCHHHHHhhh
Confidence 99999999988765
Done!