Query 046770
Match_columns 475
No_of_seqs 345 out of 2599
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 07:01:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046770.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046770hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 5.1E-42 1.7E-46 358.1 19.4 252 198-469 131-406 (549)
2 1vt4_I APAF-1 related killer D 100.0 3.9E-35 1.3E-39 312.2 17.1 241 196-473 129-392 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 9.9E-35 3.4E-39 331.5 20.0 261 192-474 121-401 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 4E-32 1.4E-36 286.7 17.8 256 194-473 123-400 (591)
5 3qfl_A MLA10; coiled-coil, (CC 99.7 1.3E-17 4.5E-22 135.0 7.7 79 26-104 2-82 (115)
6 2qen_A Walker-type ATPase; unk 99.7 7.6E-16 2.6E-20 151.0 14.8 198 193-411 10-250 (350)
7 1w5s_A Origin recognition comp 99.6 2E-15 6.9E-20 151.6 14.5 255 195-462 22-320 (412)
8 2fna_A Conserved hypothetical 99.6 7.7E-15 2.6E-19 144.1 16.4 238 193-461 11-301 (357)
9 2qby_B CDC6 homolog 3, cell di 99.5 5.9E-13 2E-17 132.2 19.3 246 195-461 20-295 (384)
10 2v1u_A Cell division control p 99.5 3.6E-12 1.2E-16 126.4 20.2 249 195-460 19-300 (387)
11 1fnn_A CDC6P, cell division co 99.4 4E-12 1.4E-16 126.3 20.0 252 195-462 17-300 (389)
12 2qby_A CDC6 homolog 1, cell di 99.4 1.6E-12 5.5E-17 128.9 14.3 248 194-460 19-296 (386)
13 1njg_A DNA polymerase III subu 99.4 2E-12 6.8E-17 119.3 14.0 198 195-411 23-232 (250)
14 2chg_A Replication factor C sm 99.4 9.5E-12 3.2E-16 113.2 14.5 188 195-410 17-207 (226)
15 1sxj_B Activator 1 37 kDa subu 99.2 6.4E-11 2.2E-15 114.4 12.3 186 195-408 21-211 (323)
16 1iqp_A RFCS; clamp loader, ext 99.1 9E-10 3.1E-14 106.5 12.2 189 195-411 25-216 (327)
17 2chq_A Replication factor C sm 98.9 5.1E-09 1.8E-13 100.7 12.7 184 195-409 17-206 (319)
18 3te6_A Regulatory protein SIR3 98.9 8E-09 2.7E-13 98.6 13.0 172 196-374 21-212 (318)
19 1jr3_A DNA polymerase III subu 98.9 1.1E-08 3.7E-13 100.8 12.6 197 195-409 16-223 (373)
20 1jbk_A CLPB protein; beta barr 98.8 1.2E-08 4.1E-13 90.1 8.5 45 195-247 22-66 (195)
21 1sxj_D Activator 1 41 kDa subu 98.7 3.8E-08 1.3E-12 96.1 11.3 195 195-407 37-235 (353)
22 3pvs_A Replication-associated 98.7 1.8E-07 6.1E-12 94.1 15.2 181 195-408 26-216 (447)
23 1hqc_A RUVB; extended AAA-ATPa 98.7 6.2E-08 2.1E-12 93.5 10.6 183 195-411 12-215 (324)
24 3bos_A Putative DNA replicatio 98.6 2E-08 6.9E-13 92.2 5.0 174 196-408 29-218 (242)
25 1sxj_E Activator 1 40 kDa subu 98.6 2.1E-07 7.2E-12 90.9 11.5 198 195-409 14-239 (354)
26 3uk6_A RUVB-like 2; hexameric 98.5 1.1E-06 3.6E-11 86.4 14.8 199 195-407 44-303 (368)
27 2z4s_A Chromosomal replication 98.5 5.7E-07 1.9E-11 90.5 12.9 183 224-427 130-333 (440)
28 3pfi_A Holliday junction ATP-d 98.5 7.5E-07 2.6E-11 86.4 12.9 179 195-408 29-228 (338)
29 1a5t_A Delta prime, HOLB; zinc 98.5 2.7E-06 9.4E-11 82.3 15.8 170 201-406 8-204 (334)
30 1sxj_A Activator 1 95 kDa subu 98.4 6.7E-07 2.3E-11 92.0 10.7 196 195-406 39-252 (516)
31 3u61_B DNA polymerase accessor 98.4 8.4E-07 2.9E-11 85.5 10.6 184 195-410 26-219 (324)
32 3h4m_A Proteasome-activating n 98.4 1.4E-06 4.7E-11 82.4 11.5 186 194-406 16-230 (285)
33 3syl_A Protein CBBX; photosynt 98.4 9.2E-07 3.1E-11 84.6 10.1 161 196-374 32-218 (309)
34 1sxj_C Activator 1 40 kDa subu 98.4 2.3E-06 7.9E-11 83.1 11.9 186 195-408 25-213 (340)
35 2qp9_X Vacuolar protein sortin 98.4 1E-05 3.5E-10 78.9 16.4 187 195-407 51-261 (355)
36 1d2n_A N-ethylmaleimide-sensit 98.3 8.9E-06 3E-10 76.2 15.2 195 196-424 34-259 (272)
37 2p65_A Hypothetical protein PF 98.3 6.6E-07 2.3E-11 78.4 6.3 45 195-247 22-66 (187)
38 1xwi_A SKD1 protein; VPS4B, AA 98.3 2.6E-05 8.8E-10 75.0 17.5 192 195-409 12-225 (322)
39 2qz4_A Paraplegin; AAA+, SPG7, 98.3 2E-05 6.7E-10 73.2 15.9 191 195-408 6-223 (262)
40 3n70_A Transport activator; si 98.3 1.4E-06 4.6E-11 73.5 6.6 115 196-343 2-116 (145)
41 3eie_A Vacuolar protein sortin 98.2 2.1E-05 7.3E-10 75.6 15.7 186 195-408 18-229 (322)
42 3pxg_A Negative regulator of g 98.2 5.6E-06 1.9E-10 83.9 11.4 149 195-373 180-338 (468)
43 1l8q_A Chromosomal replication 98.2 1.5E-05 5.1E-10 76.7 13.7 155 224-402 37-203 (324)
44 3d8b_A Fidgetin-like protein 1 98.2 2.4E-05 8E-10 76.4 14.9 191 195-409 84-297 (357)
45 2zan_A Vacuolar protein sortin 98.2 4.5E-05 1.5E-09 76.7 16.9 191 195-408 134-346 (444)
46 3b9p_A CG5977-PA, isoform A; A 98.2 5.2E-05 1.8E-09 71.8 16.0 185 195-408 21-234 (297)
47 1qvr_A CLPB protein; coiled co 98.1 1.8E-06 6.2E-11 94.2 6.0 155 195-372 170-344 (854)
48 3ec2_A DNA replication protein 98.1 4.1E-06 1.4E-10 73.2 7.3 121 200-342 19-142 (180)
49 3vfd_A Spastin; ATPase, microt 98.1 8E-05 2.7E-09 73.5 16.2 190 195-408 115-327 (389)
50 3co5_A Putative two-component 98.1 2.4E-06 8.1E-11 71.8 4.1 110 196-342 5-115 (143)
51 4fcw_A Chaperone protein CLPB; 98.1 9.9E-06 3.4E-10 77.3 9.0 137 196-342 18-169 (311)
52 3cf0_A Transitional endoplasmi 98.0 8E-05 2.7E-09 70.8 14.3 181 195-402 15-223 (301)
53 3pxi_A Negative regulator of g 98.0 2.2E-05 7.5E-10 84.6 11.2 149 195-373 180-338 (758)
54 2gno_A DNA polymerase III, gam 98.0 2.1E-05 7.1E-10 74.9 9.7 146 201-373 3-152 (305)
55 1r6b_X CLPA protein; AAA+, N-t 97.9 5.3E-05 1.8E-09 81.7 12.7 156 195-373 186-362 (758)
56 3hu3_A Transitional endoplasmi 97.9 9.2E-05 3.1E-09 75.1 13.1 185 195-406 204-414 (489)
57 1ojl_A Transcriptional regulat 97.9 2.2E-05 7.6E-10 74.8 7.9 158 195-370 2-187 (304)
58 2w58_A DNAI, primosome compone 97.9 1.3E-05 4.5E-10 71.3 5.9 118 203-342 37-158 (202)
59 2bjv_A PSP operon transcriptio 97.9 2.3E-05 7.9E-10 73.0 7.5 46 196-247 7-52 (265)
60 2c9o_A RUVB-like 1; hexameric 97.8 8.1E-05 2.8E-09 75.1 10.3 100 305-408 297-411 (456)
61 1ofh_A ATP-dependent HSL prote 97.8 0.00013 4.5E-09 69.3 11.0 53 195-247 15-73 (310)
62 2kjq_A DNAA-related protein; s 97.7 1.6E-05 5.6E-10 67.1 3.2 86 225-342 37-124 (149)
63 4b4t_K 26S protease regulatory 97.7 0.00023 8E-09 70.5 11.9 51 195-247 172-229 (428)
64 1lv7_A FTSH; alpha/beta domain 97.7 0.00087 3E-08 61.8 14.8 185 195-404 12-222 (257)
65 4b4t_J 26S protease regulatory 97.7 0.00041 1.4E-08 67.8 12.6 180 195-401 148-355 (405)
66 4b4t_L 26S protease subunit RP 97.6 0.00039 1.3E-08 69.0 12.5 180 195-401 181-388 (437)
67 4b4t_H 26S protease regulatory 97.6 0.00061 2.1E-08 67.6 13.8 178 196-400 210-415 (467)
68 1in4_A RUVB, holliday junction 97.6 0.00044 1.5E-08 66.7 12.6 179 195-408 25-224 (334)
69 3pxi_A Negative regulator of g 97.6 0.00021 7E-09 77.0 10.7 157 195-372 491-674 (758)
70 2r62_A Cell division protease 97.6 4.4E-05 1.5E-09 71.2 4.1 157 195-373 11-196 (268)
71 4b4t_M 26S protease regulatory 97.5 0.00021 7.1E-09 70.9 8.0 178 195-400 181-387 (434)
72 2ce7_A Cell division protein F 97.5 0.00098 3.4E-08 67.1 12.9 179 195-400 16-221 (476)
73 3m6a_A ATP-dependent protease 97.4 0.00079 2.7E-08 69.3 11.4 165 195-373 81-266 (543)
74 4b4t_I 26S protease regulatory 97.4 0.00066 2.2E-08 66.7 10.1 178 195-400 182-388 (437)
75 1qvr_A CLPB protein; coiled co 97.3 0.00035 1.2E-08 76.2 7.7 137 196-342 559-710 (854)
76 3cf2_A TER ATPase, transitiona 97.2 0.0051 1.7E-07 65.7 15.8 182 195-401 204-408 (806)
77 3nbx_X ATPase RAVA; AAA+ ATPas 97.2 0.002 6.8E-08 65.3 12.1 43 196-248 23-65 (500)
78 1r6b_X CLPA protein; AAA+, N-t 97.2 0.00025 8.4E-09 76.4 5.6 134 196-342 459-607 (758)
79 3t15_A Ribulose bisphosphate c 97.2 0.0015 5.2E-08 61.6 10.4 26 222-247 34-59 (293)
80 2qgz_A Helicase loader, putati 97.2 0.00015 5.1E-09 69.1 3.2 42 201-247 134-175 (308)
81 2vhj_A Ntpase P4, P4; non- hyd 97.2 0.00018 6.1E-09 68.0 3.6 68 225-314 124-193 (331)
82 2r44_A Uncharacterized protein 97.2 0.0013 4.6E-08 63.1 9.9 151 196-374 28-199 (331)
83 2cvh_A DNA repair and recombin 97.2 0.0019 6.4E-08 57.8 10.3 84 225-314 21-116 (220)
84 1jr3_D DNA polymerase III, del 97.0 0.011 3.9E-07 56.8 14.2 157 224-406 18-184 (343)
85 1um8_A ATP-dependent CLP prote 96.9 0.0024 8.2E-08 62.5 9.3 23 225-247 73-95 (376)
86 2dhr_A FTSH; AAA+ protein, hex 96.8 0.01 3.5E-07 60.1 12.8 177 195-400 31-236 (499)
87 1ypw_A Transitional endoplasmi 96.8 0.005 1.7E-07 66.4 10.9 158 195-373 204-385 (806)
88 3hr8_A Protein RECA; alpha and 96.7 0.0041 1.4E-07 60.0 8.8 83 225-314 62-150 (356)
89 2x8a_A Nuclear valosin-contain 96.7 0.0071 2.4E-07 56.3 9.9 126 227-373 47-191 (274)
90 1xp8_A RECA protein, recombina 96.6 0.0062 2.1E-07 59.1 9.0 82 225-313 75-162 (366)
91 1v5w_A DMC1, meiotic recombina 96.6 0.0079 2.7E-07 58.0 9.7 89 224-313 122-229 (343)
92 2zr9_A Protein RECA, recombina 96.6 0.006 2.1E-07 58.9 8.7 83 225-314 62-150 (349)
93 1n0w_A DNA repair protein RAD5 96.5 0.0051 1.7E-07 55.8 7.5 88 225-313 25-129 (243)
94 3io5_A Recombination and repai 96.5 0.0086 2.9E-07 56.4 8.7 84 226-314 30-122 (333)
95 1iy2_A ATP-dependent metallopr 96.5 0.018 6.3E-07 53.5 11.2 179 195-400 40-245 (278)
96 2i1q_A DNA repair and recombin 96.5 0.0054 1.8E-07 58.6 7.5 87 225-312 99-213 (322)
97 2z43_A DNA repair and recombin 96.4 0.0079 2.7E-07 57.5 8.6 88 225-313 108-213 (324)
98 2w0m_A SSO2452; RECA, SSPF, un 96.4 0.0039 1.4E-07 56.1 6.0 114 225-343 24-168 (235)
99 2b8t_A Thymidine kinase; deoxy 96.4 0.0011 3.7E-08 59.7 1.9 110 225-342 13-125 (223)
100 1rz3_A Hypothetical protein rb 96.4 0.0037 1.3E-07 55.2 5.5 42 200-246 3-44 (201)
101 1u94_A RECA protein, recombina 96.2 0.011 3.9E-07 57.0 8.0 82 225-313 64-151 (356)
102 2px0_A Flagellar biosynthesis 96.1 0.014 4.7E-07 55.0 8.1 24 224-247 105-128 (296)
103 1g5t_A COB(I)alamin adenosyltr 96.1 0.012 4.3E-07 51.3 7.0 51 293-343 109-163 (196)
104 3tqc_A Pantothenate kinase; bi 96.0 0.017 5.8E-07 54.9 8.5 46 197-246 69-114 (321)
105 2pze_A Cystic fibrosis transme 96.0 0.077 2.6E-06 47.8 12.5 23 225-247 35-57 (229)
106 3lw7_A Adenylate kinase relate 95.8 0.0045 1.5E-07 52.9 3.1 20 225-244 2-21 (179)
107 1qhx_A CPT, protein (chloramph 95.8 0.0042 1.4E-07 53.5 2.9 22 225-246 4-25 (178)
108 3kb2_A SPBC2 prophage-derived 95.8 0.0043 1.5E-07 52.9 3.0 22 225-246 2-23 (173)
109 3c8u_A Fructokinase; YP_612366 95.7 0.0085 2.9E-07 53.2 4.7 25 223-247 21-45 (208)
110 1zp6_A Hypothetical protein AT 95.7 0.0059 2E-07 53.2 3.5 23 225-247 10-32 (191)
111 1ly1_A Polynucleotide kinase; 95.7 0.0059 2E-07 52.5 3.3 22 225-246 3-24 (181)
112 1gvn_B Zeta; postsegregational 95.6 0.012 4.1E-07 55.2 5.5 25 222-246 31-55 (287)
113 3ice_A Transcription terminati 95.6 0.018 6.1E-07 55.7 6.6 54 205-266 162-216 (422)
114 1kgd_A CASK, peripheral plasma 95.6 0.0058 2E-07 52.9 2.9 22 225-246 6-27 (180)
115 3vaa_A Shikimate kinase, SK; s 95.5 0.0066 2.3E-07 53.5 3.1 22 225-246 26-47 (199)
116 1vma_A Cell division protein F 95.5 0.084 2.9E-06 49.8 10.9 90 222-314 102-197 (306)
117 1g8p_A Magnesium-chelatase 38 95.5 0.0064 2.2E-07 58.6 3.2 45 195-247 24-68 (350)
118 1kag_A SKI, shikimate kinase I 95.5 0.0057 1.9E-07 52.3 2.5 22 225-246 5-26 (173)
119 3trf_A Shikimate kinase, SK; a 95.4 0.007 2.4E-07 52.4 2.9 22 225-246 6-27 (185)
120 3uie_A Adenylyl-sulfate kinase 95.4 0.0097 3.3E-07 52.4 3.9 24 224-247 25-48 (200)
121 3dm5_A SRP54, signal recogniti 95.4 0.06 2.1E-06 53.3 9.7 24 223-246 99-122 (443)
122 3lda_A DNA repair protein RAD5 95.4 0.043 1.5E-06 53.8 8.7 87 225-312 179-282 (400)
123 2p5t_B PEZT; postsegregational 95.4 0.014 4.9E-07 53.5 4.9 25 222-246 30-54 (253)
124 1pzn_A RAD51, DNA repair and r 95.4 0.029 1E-06 54.1 7.3 46 224-269 131-180 (349)
125 1nks_A Adenylate kinase; therm 95.4 0.0085 2.9E-07 52.1 3.2 23 225-247 2-24 (194)
126 2rhm_A Putative kinase; P-loop 95.4 0.0093 3.2E-07 51.9 3.4 23 224-246 5-27 (193)
127 3t61_A Gluconokinase; PSI-biol 95.3 0.0072 2.5E-07 53.3 2.7 24 224-247 18-41 (202)
128 3bh0_A DNAB-like replicative h 95.3 0.071 2.4E-06 50.6 9.8 50 225-278 69-118 (315)
129 3tr0_A Guanylate kinase, GMP k 95.3 0.0091 3.1E-07 52.6 3.3 22 225-246 8-29 (205)
130 1odf_A YGR205W, hypothetical 3 95.3 0.014 4.6E-07 54.8 4.5 81 222-302 29-117 (290)
131 1knq_A Gluconate kinase; ALFA/ 95.3 0.013 4.5E-07 50.2 4.0 23 224-246 8-30 (175)
132 3upu_A ATP-dependent DNA helic 95.2 0.021 7.2E-07 57.4 6.1 22 226-247 47-68 (459)
133 4gp7_A Metallophosphoesterase; 95.2 0.0096 3.3E-07 51.1 3.1 22 225-246 10-31 (171)
134 2hf9_A Probable hydrogenase ni 95.2 0.015 5.2E-07 52.0 4.6 39 201-247 23-61 (226)
135 1zuh_A Shikimate kinase; alpha 95.2 0.0091 3.1E-07 50.9 2.9 25 222-246 5-29 (168)
136 3hws_A ATP-dependent CLP prote 95.2 0.014 4.6E-07 56.8 4.4 52 196-247 16-74 (363)
137 1sky_E F1-ATPase, F1-ATP synth 95.2 0.03 1E-06 55.7 6.9 50 226-276 153-203 (473)
138 3asz_A Uridine kinase; cytidin 95.2 0.011 3.9E-07 52.3 3.5 24 223-246 5-28 (211)
139 1kht_A Adenylate kinase; phosp 95.2 0.0098 3.4E-07 51.6 3.1 22 225-246 4-25 (192)
140 3cf2_A TER ATPase, transitiona 95.2 0.03 1E-06 59.8 7.2 159 195-373 477-661 (806)
141 4eun_A Thermoresistant glucoki 95.2 0.011 3.7E-07 52.1 3.3 22 225-246 30-51 (200)
142 3a00_A Guanylate kinase, GMP k 95.2 0.0085 2.9E-07 52.1 2.6 22 225-246 2-23 (186)
143 3tau_A Guanylate kinase, GMP k 95.2 0.011 3.6E-07 52.6 3.2 23 225-247 9-31 (208)
144 2bdt_A BH3686; alpha-beta prot 95.2 0.012 4E-07 51.2 3.5 22 225-246 3-24 (189)
145 2ze6_A Isopentenyl transferase 95.1 0.011 3.7E-07 54.4 3.3 23 225-247 2-24 (253)
146 1ukz_A Uridylate kinase; trans 95.1 0.013 4.4E-07 51.6 3.7 25 222-246 13-37 (203)
147 1uf9_A TT1252 protein; P-loop, 95.1 0.012 4.2E-07 51.6 3.5 25 222-246 6-30 (203)
148 1ex7_A Guanylate kinase; subst 95.1 0.0084 2.9E-07 52.2 2.3 22 225-246 2-23 (186)
149 3iij_A Coilin-interacting nucl 95.1 0.0091 3.1E-07 51.5 2.5 23 224-246 11-33 (180)
150 2ck3_D ATP synthase subunit be 95.1 0.14 4.8E-06 50.9 11.2 65 206-278 142-207 (482)
151 1tev_A UMP-CMP kinase; ploop, 95.1 0.012 4.2E-07 51.2 3.3 22 225-246 4-25 (196)
152 4a1f_A DNAB helicase, replicat 95.1 0.063 2.2E-06 51.3 8.5 49 225-277 47-95 (338)
153 1ye8_A Protein THEP1, hypothet 95.0 0.013 4.3E-07 50.8 3.2 22 226-247 2-23 (178)
154 3umf_A Adenylate kinase; rossm 95.0 0.014 4.7E-07 52.2 3.5 26 222-247 27-52 (217)
155 2qt1_A Nicotinamide riboside k 95.0 0.015 5E-07 51.5 3.8 25 223-247 20-44 (207)
156 2j41_A Guanylate kinase; GMP, 95.0 0.012 4E-07 51.9 3.1 23 225-247 7-29 (207)
157 1jjv_A Dephospho-COA kinase; P 95.0 0.014 4.8E-07 51.5 3.6 22 225-246 3-24 (206)
158 2c95_A Adenylate kinase 1; tra 95.0 0.012 4.1E-07 51.3 3.1 22 225-246 10-31 (196)
159 1y63_A LMAJ004144AAA protein; 95.0 0.013 4.4E-07 50.9 3.2 23 224-246 10-32 (184)
160 1cke_A CK, MSSA, protein (cyti 95.0 0.012 4E-07 52.8 3.0 22 225-246 6-27 (227)
161 2jaq_A Deoxyguanosine kinase; 95.0 0.012 4.2E-07 51.6 3.1 22 226-247 2-23 (205)
162 1via_A Shikimate kinase; struc 95.0 0.0097 3.3E-07 51.1 2.3 22 225-246 5-26 (175)
163 2qor_A Guanylate kinase; phosp 95.0 0.0096 3.3E-07 52.6 2.3 24 224-247 12-35 (204)
164 2if2_A Dephospho-COA kinase; a 94.9 0.012 4.2E-07 51.8 3.0 22 225-246 2-23 (204)
165 1lvg_A Guanylate kinase, GMP k 94.9 0.011 3.7E-07 52.1 2.5 22 225-246 5-26 (198)
166 2wsm_A Hydrogenase expression/ 94.9 0.017 5.7E-07 51.6 3.8 41 199-247 13-53 (221)
167 2iyv_A Shikimate kinase, SK; t 94.9 0.0096 3.3E-07 51.5 2.1 21 226-246 4-24 (184)
168 3cm0_A Adenylate kinase; ATP-b 94.9 0.015 5E-07 50.4 3.3 22 225-246 5-26 (186)
169 3a4m_A L-seryl-tRNA(SEC) kinas 94.9 0.015 5.1E-07 53.6 3.4 23 224-246 4-26 (260)
170 3kl4_A SRP54, signal recogniti 94.8 0.12 4.2E-06 51.0 10.1 25 223-247 96-120 (433)
171 1qf9_A UMP/CMP kinase, protein 94.8 0.019 6.4E-07 49.8 3.8 23 224-246 6-28 (194)
172 1e6c_A Shikimate kinase; phosp 94.8 0.012 4E-07 50.3 2.3 22 225-246 3-24 (173)
173 2grj_A Dephospho-COA kinase; T 94.8 0.018 6.1E-07 50.4 3.5 25 222-246 10-34 (192)
174 2xxa_A Signal recognition part 94.8 0.22 7.5E-06 49.4 11.8 25 222-246 98-122 (433)
175 2plr_A DTMP kinase, probable t 94.8 0.016 5.5E-07 51.2 3.3 23 225-247 5-27 (213)
176 2bwj_A Adenylate kinase 5; pho 94.8 0.014 4.8E-07 51.1 2.8 22 225-246 13-34 (199)
177 1xjc_A MOBB protein homolog; s 94.8 0.016 5.3E-07 49.6 3.0 25 223-247 3-27 (169)
178 2yvu_A Probable adenylyl-sulfa 94.8 0.019 6.5E-07 49.7 3.7 25 223-247 12-36 (186)
179 2bbw_A Adenylate kinase 4, AK4 94.7 0.016 5.4E-07 52.9 3.3 23 224-246 27-49 (246)
180 3ney_A 55 kDa erythrocyte memb 94.7 0.015 5.1E-07 51.0 2.9 23 224-246 19-41 (197)
181 2cdn_A Adenylate kinase; phosp 94.7 0.019 6.4E-07 50.5 3.5 23 224-246 20-42 (201)
182 1znw_A Guanylate kinase, GMP k 94.7 0.017 5.8E-07 51.1 3.3 22 225-246 21-42 (207)
183 1uj2_A Uridine-cytidine kinase 94.7 0.018 6E-07 52.8 3.4 25 222-246 20-44 (252)
184 2pt5_A Shikimate kinase, SK; a 94.7 0.017 5.8E-07 49.0 3.1 21 226-246 2-22 (168)
185 2pbr_A DTMP kinase, thymidylat 94.7 0.016 5.6E-07 50.3 3.1 21 226-246 2-22 (195)
186 1fx0_B ATP synthase beta chain 94.6 0.12 4E-06 51.6 9.3 98 207-312 155-275 (498)
187 1q57_A DNA primase/helicase; d 94.6 0.11 3.8E-06 52.7 9.5 50 225-277 243-292 (503)
188 2jeo_A Uridine-cytidine kinase 94.6 0.022 7.6E-07 51.9 3.8 23 224-246 25-47 (245)
189 2vli_A Antibiotic resistance p 94.5 0.012 4E-07 50.8 1.8 23 224-246 5-27 (183)
190 2r6a_A DNAB helicase, replicat 94.5 0.099 3.4E-06 52.3 8.8 49 225-276 204-252 (454)
191 3aez_A Pantothenate kinase; tr 94.5 0.022 7.7E-07 53.9 3.8 24 223-246 89-112 (312)
192 1htw_A HI0065; nucleotide-bind 94.5 0.023 7.9E-07 48.0 3.5 22 225-246 34-55 (158)
193 2ga8_A Hypothetical 39.9 kDa p 94.5 0.037 1.3E-06 53.0 5.2 42 201-246 5-46 (359)
194 1nn5_A Similar to deoxythymidy 94.5 0.02 6.8E-07 50.8 3.1 24 224-247 9-32 (215)
195 2z0h_A DTMP kinase, thymidylat 94.5 0.02 6.7E-07 50.0 3.1 22 226-247 2-23 (197)
196 1z6g_A Guanylate kinase; struc 94.4 0.017 5.7E-07 51.7 2.5 22 225-246 24-45 (218)
197 3l0o_A Transcription terminati 94.4 0.24 8.3E-06 47.9 10.6 53 205-265 163-216 (427)
198 1s96_A Guanylate kinase, GMP k 94.4 0.021 7.2E-07 51.1 3.1 23 225-247 17-39 (219)
199 2wwf_A Thymidilate kinase, put 94.4 0.02 6.9E-07 50.6 3.0 24 224-247 10-33 (212)
200 3fb4_A Adenylate kinase; psych 94.4 0.021 7.1E-07 50.8 3.1 21 226-246 2-22 (216)
201 1tue_A Replication protein E1; 94.4 0.033 1.1E-06 49.0 4.1 37 204-247 45-81 (212)
202 1gtv_A TMK, thymidylate kinase 94.4 0.013 4.3E-07 52.1 1.6 22 226-247 2-23 (214)
203 4e22_A Cytidylate kinase; P-lo 94.4 0.022 7.5E-07 52.2 3.2 22 225-246 28-49 (252)
204 1aky_A Adenylate kinase; ATP:A 94.3 0.022 7.4E-07 50.9 3.1 22 225-246 5-26 (220)
205 1zd8_A GTP:AMP phosphotransfer 94.3 0.02 7E-07 51.4 2.9 23 224-246 7-29 (227)
206 1ixz_A ATP-dependent metallopr 94.3 0.02 6.7E-07 52.5 2.8 149 227-400 52-221 (254)
207 2f6r_A COA synthase, bifunctio 94.3 0.028 9.5E-07 52.4 3.8 25 222-246 73-97 (281)
208 3fwy_A Light-independent proto 94.2 0.027 9.1E-07 53.5 3.6 25 222-246 46-70 (314)
209 3dl0_A Adenylate kinase; phosp 94.2 0.023 8E-07 50.5 3.1 21 226-246 2-22 (216)
210 2pez_A Bifunctional 3'-phospho 94.2 0.028 9.5E-07 48.4 3.4 23 224-246 5-27 (179)
211 2v54_A DTMP kinase, thymidylat 94.2 0.024 8.2E-07 49.8 3.0 23 225-247 5-27 (204)
212 4a74_A DNA repair and recombin 94.2 0.027 9.1E-07 50.5 3.4 44 225-268 26-73 (231)
213 3cmu_A Protein RECA, recombina 94.2 0.075 2.6E-06 62.0 7.7 83 223-312 1426-1514(2050)
214 1rj9_A FTSY, signal recognitio 94.2 0.028 9.5E-07 53.1 3.6 23 224-246 102-124 (304)
215 2ehv_A Hypothetical protein PH 94.1 0.026 8.8E-07 51.3 3.2 22 225-246 31-52 (251)
216 3tlx_A Adenylate kinase 2; str 94.1 0.029 9.9E-07 51.1 3.5 24 223-246 28-51 (243)
217 2ffh_A Protein (FFH); SRP54, s 94.1 0.18 6E-06 49.8 9.3 23 225-247 99-121 (425)
218 1sq5_A Pantothenate kinase; P- 94.1 0.056 1.9E-06 51.1 5.7 24 223-246 79-102 (308)
219 1vht_A Dephospho-COA kinase; s 94.1 0.031 1.1E-06 49.8 3.6 22 225-246 5-26 (218)
220 1zak_A Adenylate kinase; ATP:A 94.1 0.022 7.4E-07 51.0 2.6 23 224-246 5-27 (222)
221 2f1r_A Molybdopterin-guanine d 94.0 0.018 6.1E-07 49.4 1.8 23 225-247 3-25 (171)
222 1m7g_A Adenylylsulfate kinase; 94.0 0.032 1.1E-06 49.4 3.5 24 224-247 25-48 (211)
223 3e1s_A Exodeoxyribonuclease V, 94.0 0.11 3.9E-06 53.5 8.1 103 225-340 205-313 (574)
224 3lnc_A Guanylate kinase, GMP k 94.0 0.018 6.3E-07 51.8 1.9 22 225-246 28-50 (231)
225 2j37_W Signal recognition part 94.0 0.37 1.3E-05 48.6 11.5 25 222-246 99-123 (504)
226 3tif_A Uncharacterized ABC tra 93.9 0.028 9.6E-07 50.9 3.0 22 225-246 32-53 (235)
227 2onk_A Molybdate/tungstate ABC 93.9 0.03 1E-06 50.9 3.3 22 225-246 25-46 (240)
228 2i3b_A HCR-ntpase, human cance 93.9 0.027 9.2E-07 49.2 2.7 22 226-247 3-24 (189)
229 1np6_A Molybdopterin-guanine d 93.9 0.031 1.1E-06 48.1 3.0 25 223-247 5-29 (174)
230 2pcj_A ABC transporter, lipopr 93.9 0.029 9.9E-07 50.4 2.9 22 225-246 31-52 (224)
231 3ake_A Cytidylate kinase; CMP 93.8 0.031 1.1E-06 49.2 3.1 21 226-246 4-24 (208)
232 3be4_A Adenylate kinase; malar 93.8 0.028 9.7E-07 50.1 2.7 22 225-246 6-27 (217)
233 1g41_A Heat shock protein HSLU 93.8 0.031 1.1E-06 55.4 3.1 53 195-247 15-73 (444)
234 3mfy_A V-type ATP synthase alp 93.7 0.16 5.4E-06 51.3 8.2 58 206-274 216-274 (588)
235 3d3q_A TRNA delta(2)-isopenten 93.7 0.036 1.2E-06 52.9 3.3 23 225-247 8-30 (340)
236 1ny5_A Transcriptional regulat 93.6 0.2 6.8E-06 49.0 8.7 46 196-247 138-183 (387)
237 3sr0_A Adenylate kinase; phosp 93.6 0.036 1.2E-06 49.1 3.1 22 226-247 2-23 (206)
238 3a8t_A Adenylate isopentenyltr 93.6 0.044 1.5E-06 52.1 3.9 24 224-247 40-63 (339)
239 3b85_A Phosphate starvation-in 93.6 0.029 9.8E-07 49.8 2.4 23 225-247 23-45 (208)
240 3b9q_A Chloroplast SRP recepto 93.6 0.043 1.5E-06 51.7 3.7 23 224-246 100-122 (302)
241 2xb4_A Adenylate kinase; ATP-b 93.6 0.036 1.2E-06 49.7 3.1 21 226-246 2-22 (223)
242 2ged_A SR-beta, signal recogni 93.6 0.057 1.9E-06 46.7 4.3 25 223-247 47-71 (193)
243 3nwj_A ATSK2; P loop, shikimat 93.6 0.028 9.6E-07 51.4 2.4 22 225-246 49-70 (250)
244 2cbz_A Multidrug resistance-as 93.6 0.036 1.2E-06 50.3 3.0 23 225-247 32-54 (237)
245 3gfo_A Cobalt import ATP-bindi 93.6 0.035 1.2E-06 51.6 3.0 22 225-246 35-56 (275)
246 1b0u_A Histidine permease; ABC 93.6 0.036 1.2E-06 51.1 3.0 22 225-246 33-54 (262)
247 1e4v_A Adenylate kinase; trans 93.5 0.036 1.2E-06 49.2 3.0 21 226-246 2-22 (214)
248 3r20_A Cytidylate kinase; stru 93.5 0.037 1.3E-06 49.9 3.0 23 224-246 9-31 (233)
249 3exa_A TRNA delta(2)-isopenten 93.5 0.043 1.5E-06 51.6 3.4 23 225-247 4-26 (322)
250 3p32_A Probable GTPase RV1496/ 93.5 0.081 2.8E-06 51.1 5.5 37 204-246 65-101 (355)
251 1ji0_A ABC transporter; ATP bi 93.4 0.039 1.3E-06 50.1 3.0 22 225-246 33-54 (240)
252 3crm_A TRNA delta(2)-isopenten 93.4 0.041 1.4E-06 52.1 3.3 23 225-247 6-28 (323)
253 2q6t_A DNAB replication FORK h 93.4 0.23 7.8E-06 49.5 8.9 51 225-278 201-251 (444)
254 2fz4_A DNA repair protein RAD2 93.4 0.43 1.5E-05 43.0 10.0 101 227-341 111-227 (237)
255 4g1u_C Hemin import ATP-bindin 93.4 0.039 1.3E-06 51.0 3.0 22 225-246 38-59 (266)
256 1yrb_A ATP(GTP)binding protein 93.4 0.054 1.8E-06 49.6 4.0 25 222-246 12-36 (262)
257 1g6h_A High-affinity branched- 93.4 0.039 1.3E-06 50.7 3.0 22 225-246 34-55 (257)
258 1ak2_A Adenylate kinase isoenz 93.4 0.042 1.5E-06 49.5 3.2 23 225-247 17-39 (233)
259 2d2e_A SUFC protein; ABC-ATPas 93.4 0.043 1.5E-06 50.2 3.3 22 225-246 30-51 (250)
260 1j8m_F SRP54, signal recogniti 93.4 0.21 7.3E-06 46.8 8.1 24 224-247 98-121 (297)
261 3e70_C DPA, signal recognition 93.4 0.051 1.8E-06 51.8 3.9 25 223-247 128-152 (328)
262 3vr4_A V-type sodium ATPase ca 93.4 0.2 6.7E-06 50.8 8.1 50 206-266 221-270 (600)
263 1mv5_A LMRA, multidrug resista 93.4 0.044 1.5E-06 49.9 3.2 22 225-246 29-50 (243)
264 2olj_A Amino acid ABC transpor 93.3 0.041 1.4E-06 50.7 3.0 22 225-246 51-72 (263)
265 1sgw_A Putative ABC transporte 93.3 0.035 1.2E-06 49.5 2.5 23 225-247 36-58 (214)
266 1ltq_A Polynucleotide kinase; 93.3 0.043 1.5E-06 51.5 3.3 22 225-246 3-24 (301)
267 1a7j_A Phosphoribulokinase; tr 93.3 0.023 7.7E-07 53.3 1.2 24 223-246 4-27 (290)
268 2ff7_A Alpha-hemolysin translo 93.3 0.042 1.4E-06 50.1 3.0 22 225-246 36-57 (247)
269 3k1j_A LON protease, ATP-depen 93.3 0.045 1.6E-06 57.0 3.6 43 195-247 41-83 (604)
270 2zu0_C Probable ATP-dependent 93.3 0.046 1.6E-06 50.6 3.2 23 225-247 47-69 (267)
271 2qe7_A ATP synthase subunit al 93.3 0.16 5.6E-06 50.7 7.4 96 206-312 151-263 (502)
272 2zej_A Dardarin, leucine-rich 93.3 0.043 1.5E-06 47.3 2.9 22 226-247 4-25 (184)
273 3foz_A TRNA delta(2)-isopenten 93.2 0.055 1.9E-06 50.8 3.7 25 223-247 9-33 (316)
274 1vpl_A ABC transporter, ATP-bi 93.2 0.044 1.5E-06 50.3 3.0 22 225-246 42-63 (256)
275 2wji_A Ferrous iron transport 93.2 0.059 2E-06 45.4 3.7 23 225-247 4-26 (165)
276 1oix_A RAS-related protein RAB 93.2 0.045 1.5E-06 47.5 3.0 24 224-247 29-52 (191)
277 2dyk_A GTP-binding protein; GT 93.2 0.056 1.9E-06 45.0 3.4 23 225-247 2-24 (161)
278 3zvl_A Bifunctional polynucleo 93.2 0.047 1.6E-06 54.0 3.4 26 222-247 256-281 (416)
279 2ixe_A Antigen peptide transpo 93.2 0.045 1.5E-06 50.7 3.0 22 225-246 46-67 (271)
280 4akg_A Glutathione S-transfera 93.1 0.3 1E-05 58.9 10.6 139 225-373 1268-1431(2695)
281 2eyu_A Twitching motility prot 93.1 0.053 1.8E-06 49.9 3.5 111 225-347 26-137 (261)
282 2ghi_A Transport protein; mult 93.1 0.046 1.6E-06 50.3 3.0 23 225-247 47-69 (260)
283 2qi9_C Vitamin B12 import ATP- 93.1 0.047 1.6E-06 49.8 3.0 23 225-247 27-49 (249)
284 2dr3_A UPF0273 protein PH0284; 93.1 0.067 2.3E-06 48.3 4.0 38 225-264 24-61 (247)
285 3dzd_A Transcriptional regulat 93.1 0.2 6.7E-06 48.6 7.6 46 196-247 130-175 (368)
286 4eaq_A DTMP kinase, thymidylat 93.0 0.096 3.3E-06 47.1 5.0 25 224-248 26-50 (229)
287 2og2_A Putative signal recogni 93.0 0.059 2E-06 52.0 3.7 24 223-246 156-179 (359)
288 2nq2_C Hypothetical ABC transp 93.0 0.049 1.7E-06 49.9 3.1 23 225-247 32-54 (253)
289 2yz2_A Putative ABC transporte 93.0 0.049 1.7E-06 50.3 3.0 22 225-246 34-55 (266)
290 3llm_A ATP-dependent RNA helic 93.0 0.098 3.3E-06 47.1 5.0 90 225-315 77-188 (235)
291 2ihy_A ABC transporter, ATP-bi 93.0 0.05 1.7E-06 50.6 3.0 23 225-247 48-70 (279)
292 2qmh_A HPR kinase/phosphorylas 92.9 0.058 2E-06 47.1 3.2 23 225-247 35-57 (205)
293 2yv5_A YJEQ protein; hydrolase 92.9 0.079 2.7E-06 49.9 4.4 33 204-248 156-188 (302)
294 1nlf_A Regulatory protein REPA 92.9 0.049 1.7E-06 50.6 2.9 22 225-246 31-52 (279)
295 1nij_A Hypothetical protein YJ 92.9 0.053 1.8E-06 51.5 3.2 25 223-247 3-27 (318)
296 3bgw_A DNAB-like replicative h 92.9 0.37 1.3E-05 47.9 9.5 49 225-277 198-246 (444)
297 2f9l_A RAB11B, member RAS onco 92.9 0.053 1.8E-06 47.4 3.0 24 224-247 5-28 (199)
298 2v9p_A Replication protein E1; 92.9 0.057 1.9E-06 50.8 3.3 22 225-246 127-148 (305)
299 3cmu_A Protein RECA, recombina 92.8 0.18 6.1E-06 58.9 7.7 82 225-313 384-471 (2050)
300 1zu4_A FTSY; GTPase, signal re 92.7 0.071 2.4E-06 50.7 3.8 25 223-247 104-128 (320)
301 1cr0_A DNA primase/helicase; R 92.7 0.058 2E-06 50.6 3.2 23 225-247 36-58 (296)
302 3cmw_A Protein RECA, recombina 92.7 0.16 5.6E-06 58.4 7.2 83 225-314 384-472 (1706)
303 2r9v_A ATP synthase subunit al 92.6 0.24 8.2E-06 49.5 7.5 96 206-312 164-276 (515)
304 2ce2_X GTPase HRAS; signaling 92.6 0.061 2.1E-06 44.8 2.9 22 226-247 5-26 (166)
305 2wjg_A FEOB, ferrous iron tran 92.5 0.081 2.8E-06 45.4 3.6 24 224-247 7-30 (188)
306 2nzj_A GTP-binding protein REM 92.5 0.071 2.4E-06 45.0 3.2 24 224-247 4-27 (175)
307 4edh_A DTMP kinase, thymidylat 92.5 0.2 6.9E-06 44.4 6.3 23 225-247 7-29 (213)
308 2ck3_A ATP synthase subunit al 92.5 0.39 1.3E-05 48.1 8.8 100 206-312 151-271 (510)
309 3sop_A Neuronal-specific septi 92.5 0.068 2.3E-06 49.5 3.2 21 226-246 4-24 (270)
310 2vp4_A Deoxynucleoside kinase; 92.5 0.065 2.2E-06 48.2 3.0 23 224-246 20-42 (230)
311 2pjz_A Hypothetical protein ST 92.4 0.065 2.2E-06 49.4 3.0 22 225-246 31-52 (263)
312 1q3t_A Cytidylate kinase; nucl 92.4 0.071 2.4E-06 48.1 3.3 25 222-246 14-38 (236)
313 3thx_A DNA mismatch repair pro 92.4 0.086 2.9E-06 57.4 4.4 20 225-244 663-682 (934)
314 1z2a_A RAS-related protein RAB 92.4 0.067 2.3E-06 44.8 2.9 23 225-247 6-28 (168)
315 2yhs_A FTSY, cell division pro 92.4 0.078 2.7E-06 53.1 3.8 25 223-247 292-316 (503)
316 2lkc_A Translation initiation 92.4 0.091 3.1E-06 44.5 3.7 25 223-247 7-31 (178)
317 3ld9_A DTMP kinase, thymidylat 92.3 0.17 5.8E-06 45.2 5.5 26 223-248 20-45 (223)
318 3nh6_A ATP-binding cassette SU 92.3 0.057 2E-06 50.9 2.5 22 225-246 81-102 (306)
319 1u0j_A DNA replication protein 92.3 0.14 4.6E-06 47.1 4.9 37 205-247 91-127 (267)
320 3oaa_A ATP synthase subunit al 92.2 0.71 2.4E-05 46.1 10.2 94 206-312 151-263 (513)
321 2ocp_A DGK, deoxyguanosine kin 92.2 0.08 2.7E-06 47.9 3.3 23 225-247 3-25 (241)
322 3con_A GTPase NRAS; structural 92.1 0.077 2.6E-06 45.7 3.0 23 225-247 22-44 (190)
323 1svm_A Large T antigen; AAA+ f 92.1 0.083 2.8E-06 51.3 3.4 23 224-246 169-191 (377)
324 2erx_A GTP-binding protein DI- 92.1 0.083 2.8E-06 44.3 3.1 22 226-247 5-26 (172)
325 1svi_A GTP-binding protein YSX 92.1 0.099 3.4E-06 45.1 3.6 25 223-247 22-46 (195)
326 1u8z_A RAS-related protein RAL 92.0 0.081 2.8E-06 44.1 3.0 23 225-247 5-27 (168)
327 3kta_A Chromosome segregation 92.0 0.086 2.9E-06 45.2 3.2 22 225-246 27-48 (182)
328 3fvq_A Fe(3+) IONS import ATP- 92.0 0.08 2.7E-06 51.0 3.2 22 225-246 31-52 (359)
329 3vr4_D V-type sodium ATPase su 92.0 0.24 8.2E-06 48.9 6.5 100 206-312 140-257 (465)
330 3eph_A TRNA isopentenyltransfe 92.0 0.082 2.8E-06 51.5 3.2 22 225-246 3-24 (409)
331 3q85_A GTP-binding protein REM 92.0 0.087 3E-06 44.2 3.1 22 225-246 3-24 (169)
332 3q72_A GTP-binding protein RAD 92.0 0.076 2.6E-06 44.4 2.7 22 226-247 4-25 (166)
333 2gj8_A MNME, tRNA modification 92.0 0.088 3E-06 44.8 3.1 23 225-247 5-27 (172)
334 2bbs_A Cystic fibrosis transme 91.9 0.078 2.7E-06 49.6 2.9 23 225-247 65-87 (290)
335 1nrj_B SR-beta, signal recogni 91.9 0.094 3.2E-06 46.4 3.4 25 223-247 11-35 (218)
336 1fzq_A ADP-ribosylation factor 91.9 0.11 3.6E-06 44.6 3.6 25 223-247 15-39 (181)
337 1u0l_A Probable GTPase ENGC; p 91.9 0.12 4.1E-06 48.6 4.3 33 204-247 160-192 (301)
338 1z08_A RAS-related protein RAB 91.9 0.085 2.9E-06 44.3 2.9 24 224-247 6-29 (170)
339 1ek0_A Protein (GTP-binding pr 91.9 0.086 3E-06 44.1 3.0 22 226-247 5-26 (170)
340 1ls1_A Signal recognition part 91.8 0.1 3.4E-06 49.0 3.6 23 225-247 99-121 (295)
341 1kao_A RAP2A; GTP-binding prot 91.8 0.088 3E-06 43.9 2.9 22 226-247 5-26 (167)
342 3end_A Light-independent proto 91.8 0.1 3.4E-06 49.2 3.6 26 222-247 39-64 (307)
343 3pqc_A Probable GTP-binding pr 91.8 0.11 3.8E-06 44.7 3.7 24 224-247 23-46 (195)
344 3f9v_A Minichromosome maintena 91.8 0.048 1.6E-06 56.6 1.4 22 226-247 329-350 (595)
345 3hjn_A DTMP kinase, thymidylat 91.8 0.25 8.5E-06 43.2 5.9 49 226-276 2-50 (197)
346 1c1y_A RAS-related protein RAP 91.8 0.089 3E-06 44.0 2.9 22 226-247 5-26 (167)
347 3tui_C Methionine import ATP-b 91.8 0.091 3.1E-06 50.7 3.2 54 295-348 173-229 (366)
348 3ihw_A Centg3; RAS, centaurin, 91.8 0.089 3.1E-06 45.3 3.0 23 225-247 21-43 (184)
349 2cxx_A Probable GTP-binding pr 91.8 0.094 3.2E-06 45.0 3.1 22 226-247 3-24 (190)
350 1z0j_A RAB-22, RAS-related pro 91.8 0.091 3.1E-06 44.1 2.9 23 225-247 7-29 (170)
351 1m7b_A RND3/RHOE small GTP-bin 91.7 0.087 3E-06 45.2 2.9 24 224-247 7-30 (184)
352 1z47_A CYSA, putative ABC-tran 91.7 0.093 3.2E-06 50.5 3.3 22 225-246 42-63 (355)
353 1zj6_A ADP-ribosylation factor 91.7 0.2 6.8E-06 43.0 5.1 24 224-247 16-39 (187)
354 1wms_A RAB-9, RAB9, RAS-relate 91.6 0.095 3.3E-06 44.4 2.9 25 223-247 6-30 (177)
355 1p5z_B DCK, deoxycytidine kina 91.6 0.067 2.3E-06 49.2 2.1 25 223-247 23-47 (263)
356 2www_A Methylmalonic aciduria 91.6 0.11 3.9E-06 49.9 3.8 24 223-246 73-96 (349)
357 3lv8_A DTMP kinase, thymidylat 91.5 0.21 7.3E-06 45.0 5.3 24 225-248 28-51 (236)
358 3c5c_A RAS-like protein 12; GD 91.5 0.097 3.3E-06 45.1 2.9 23 225-247 22-44 (187)
359 1fx0_A ATP synthase alpha chai 91.5 0.18 6.2E-06 50.4 5.2 81 226-312 165-264 (507)
360 3rlf_A Maltose/maltodextrin im 91.5 0.1 3.4E-06 50.7 3.2 22 225-246 30-51 (381)
361 3tw8_B RAS-related protein RAB 91.5 0.094 3.2E-06 44.5 2.8 26 222-247 7-32 (181)
362 1g16_A RAS-related protein SEC 91.5 0.097 3.3E-06 43.9 2.8 23 225-247 4-26 (170)
363 1ky3_A GTP-binding protein YPT 91.5 0.12 4.2E-06 43.8 3.5 25 223-247 7-31 (182)
364 2yyz_A Sugar ABC transporter, 91.5 0.1 3.5E-06 50.3 3.3 22 225-246 30-51 (359)
365 2hxs_A RAB-26, RAS-related pro 91.5 0.1 3.5E-06 44.2 3.0 24 224-247 6-29 (178)
366 3gqb_B V-type ATP synthase bet 91.5 0.19 6.4E-06 49.7 5.2 100 206-312 136-260 (464)
367 1r8s_A ADP-ribosylation factor 91.5 0.097 3.3E-06 43.7 2.8 20 227-246 3-22 (164)
368 2aka_B Dynamin-1; fusion prote 91.4 0.24 8.3E-06 46.1 5.8 43 204-248 8-50 (299)
369 2fn4_A P23, RAS-related protei 91.4 0.13 4.4E-06 43.6 3.6 25 223-247 8-32 (181)
370 2iwr_A Centaurin gamma 1; ANK 91.4 0.086 2.9E-06 44.8 2.4 23 225-247 8-30 (178)
371 2it1_A 362AA long hypothetical 91.4 0.11 3.6E-06 50.3 3.2 22 225-246 30-51 (362)
372 1r2q_A RAS-related protein RAB 91.3 0.11 3.6E-06 43.5 3.0 23 225-247 7-29 (170)
373 1lw7_A Transcriptional regulat 91.3 0.11 3.7E-06 50.4 3.3 23 224-246 170-192 (365)
374 1g29_1 MALK, maltose transport 91.3 0.11 3.7E-06 50.4 3.3 22 225-246 30-51 (372)
375 2xau_A PRE-mRNA-splicing facto 91.3 0.59 2E-05 50.0 9.2 33 203-245 98-130 (773)
376 1m2o_B GTP-binding protein SAR 91.2 0.11 3.6E-06 45.1 2.9 23 225-247 24-46 (190)
377 3v9p_A DTMP kinase, thymidylat 91.2 0.2 6.7E-06 45.0 4.7 23 225-247 26-48 (227)
378 2rcn_A Probable GTPase ENGC; Y 91.2 0.17 5.7E-06 48.7 4.5 23 225-247 216-238 (358)
379 1v43_A Sugar-binding transport 91.2 0.11 3.8E-06 50.3 3.2 22 225-246 38-59 (372)
380 3vkw_A Replicase large subunit 91.2 0.42 1.4E-05 47.2 7.4 25 222-246 159-183 (446)
381 4dsu_A GTPase KRAS, isoform 2B 91.2 0.11 3.8E-06 44.4 2.9 23 225-247 5-27 (189)
382 3d31_A Sulfate/molybdate ABC t 91.2 0.093 3.2E-06 50.4 2.6 22 225-246 27-48 (348)
383 1p9r_A General secretion pathw 91.1 0.21 7.2E-06 49.2 5.2 22 225-246 168-189 (418)
384 2v3c_C SRP54, signal recogniti 91.1 0.078 2.7E-06 52.6 2.1 25 223-247 98-122 (432)
385 2bme_A RAB4A, RAS-related prot 91.1 0.11 3.8E-06 44.4 2.9 25 223-247 9-33 (186)
386 3kkq_A RAS-related protein M-R 91.1 0.11 3.9E-06 44.2 3.0 24 224-247 18-41 (183)
387 1f6b_A SAR1; gtpases, N-termin 91.1 0.13 4.6E-06 44.8 3.4 23 225-247 26-48 (198)
388 2y8e_A RAB-protein 6, GH09086P 91.1 0.11 3.8E-06 43.9 2.9 23 225-247 15-37 (179)
389 2qm8_A GTPase/ATPase; G protei 91.1 0.14 4.8E-06 49.0 3.8 24 223-246 54-77 (337)
390 3bc1_A RAS-related protein RAB 91.0 0.12 4E-06 44.5 3.0 25 223-247 10-34 (195)
391 4tmk_A Protein (thymidylate ki 91.0 0.3 1E-05 43.3 5.7 24 225-248 4-27 (213)
392 4gzl_A RAS-related C3 botulinu 91.0 0.13 4.6E-06 45.0 3.4 23 225-247 31-53 (204)
393 1mh1_A RAC1; GTP-binding, GTPa 91.0 0.12 4E-06 44.1 3.0 23 225-247 6-28 (186)
394 3t1o_A Gliding protein MGLA; G 91.0 0.11 3.8E-06 44.8 2.8 24 224-247 14-37 (198)
395 2cjw_A GTP-binding protein GEM 91.0 0.12 4.1E-06 44.8 3.0 22 225-246 7-28 (192)
396 1upt_A ARL1, ADP-ribosylation 91.0 0.16 5.4E-06 42.6 3.7 24 224-247 7-30 (171)
397 2orw_A Thymidine kinase; TMTK, 91.0 0.12 3.9E-06 44.8 2.8 22 225-246 4-25 (184)
398 2oil_A CATX-8, RAS-related pro 91.0 0.12 4.1E-06 44.6 3.0 25 223-247 24-48 (193)
399 3cbq_A GTP-binding protein REM 91.0 0.097 3.3E-06 45.6 2.4 24 223-246 22-45 (195)
400 4bas_A ADP-ribosylation factor 91.0 0.14 4.8E-06 44.3 3.4 26 222-247 15-40 (199)
401 2h92_A Cytidylate kinase; ross 91.0 0.099 3.4E-06 46.4 2.5 22 225-246 4-25 (219)
402 3cmw_A Protein RECA, recombina 90.9 0.34 1.2E-05 55.8 7.2 82 224-312 1431-1518(1706)
403 2a9k_A RAS-related protein RAL 90.9 0.12 4.2E-06 44.0 3.0 23 225-247 19-41 (187)
404 1cp2_A CP2, nitrogenase iron p 90.9 0.13 4.5E-06 47.2 3.4 23 225-247 2-24 (269)
405 1pui_A ENGB, probable GTP-bind 90.9 0.067 2.3E-06 47.0 1.3 23 225-247 27-49 (210)
406 3gqb_A V-type ATP synthase alp 90.9 0.19 6.5E-06 50.7 4.6 50 206-266 210-259 (578)
407 2efe_B Small GTP-binding prote 90.9 0.12 4.2E-06 43.8 2.9 24 224-247 12-35 (181)
408 2qu8_A Putative nucleolar GTP- 90.9 0.16 5.6E-06 45.3 3.9 24 224-247 29-52 (228)
409 1z0f_A RAB14, member RAS oncog 90.8 0.16 5.6E-06 42.8 3.7 25 223-247 14-38 (179)
410 3bwd_D RAC-like GTP-binding pr 90.8 0.13 4.3E-06 43.8 3.0 23 225-247 9-31 (182)
411 3cph_A RAS-related protein SEC 90.8 0.15 5E-06 44.8 3.4 24 224-247 20-43 (213)
412 3llu_A RAS-related GTP-binding 90.8 0.13 4.3E-06 44.7 3.0 23 225-247 21-43 (196)
413 2r8r_A Sensor protein; KDPD, P 90.8 0.14 4.8E-06 45.7 3.3 22 226-247 8-29 (228)
414 3t5g_A GTP-binding protein RHE 90.8 0.14 4.8E-06 43.6 3.2 25 223-247 5-29 (181)
415 2ewv_A Twitching motility prot 90.8 0.13 4.4E-06 50.0 3.3 111 225-347 137-248 (372)
416 1oxx_K GLCV, glucose, ABC tran 90.8 0.087 3E-06 50.7 2.0 22 225-246 32-53 (353)
417 1zbd_A Rabphilin-3A; G protein 90.8 0.14 4.7E-06 44.6 3.2 24 224-247 8-31 (203)
418 2atv_A RERG, RAS-like estrogen 90.8 0.13 4.4E-06 44.6 2.9 23 225-247 29-51 (196)
419 2qnr_A Septin-2, protein NEDD5 90.7 0.11 3.8E-06 48.8 2.7 20 227-246 21-40 (301)
420 2axn_A 6-phosphofructo-2-kinas 90.7 0.14 4.8E-06 52.1 3.6 24 223-246 34-57 (520)
421 2g6b_A RAS-related protein RAB 90.7 0.13 4.5E-06 43.6 3.0 24 224-247 10-33 (180)
422 4dkx_A RAS-related protein RAB 90.7 0.13 4.5E-06 45.8 3.0 22 226-247 15-36 (216)
423 1vg8_A RAS-related protein RAB 90.7 0.13 4.5E-06 44.8 2.9 25 223-247 7-31 (207)
424 2c61_A A-type ATP synthase non 90.6 0.18 6.2E-06 50.0 4.2 100 206-312 141-258 (469)
425 1gwn_A RHO-related GTP-binding 90.6 0.13 4.4E-06 45.2 2.9 23 225-247 29-51 (205)
426 1c9k_A COBU, adenosylcobinamid 90.6 0.25 8.4E-06 42.5 4.5 35 227-267 2-36 (180)
427 2afh_E Nitrogenase iron protei 90.6 0.15 5.2E-06 47.4 3.5 23 225-247 3-25 (289)
428 1ksh_A ARF-like protein 2; sma 90.6 0.14 4.7E-06 43.9 3.0 24 225-248 19-42 (186)
429 3jvv_A Twitching mobility prot 90.6 0.14 4.8E-06 49.4 3.3 113 225-348 124-236 (356)
430 3gd7_A Fusion complex of cysti 90.6 0.13 4.6E-06 50.1 3.2 22 225-246 48-69 (390)
431 2fh5_B SR-beta, signal recogni 90.5 0.14 4.6E-06 45.1 3.0 24 224-247 7-30 (214)
432 2fg5_A RAB-22B, RAS-related pr 90.5 0.13 4.5E-06 44.4 2.8 24 224-247 23-46 (192)
433 2ew1_A RAS-related protein RAB 90.5 0.13 4.5E-06 45.0 2.9 25 223-247 25-49 (201)
434 3clv_A RAB5 protein, putative; 90.5 0.14 4.7E-06 44.3 2.9 24 224-247 7-30 (208)
435 1zd9_A ADP-ribosylation factor 90.5 0.14 4.8E-06 44.1 3.0 23 225-247 23-45 (188)
436 3gmt_A Adenylate kinase; ssgci 90.5 0.13 4.5E-06 46.1 2.8 23 224-246 8-30 (230)
437 2gf9_A RAS-related protein RAB 90.5 0.14 4.8E-06 44.0 3.0 24 224-247 22-45 (189)
438 2q3h_A RAS homolog gene family 90.5 0.15 5E-06 44.4 3.1 23 225-247 21-43 (201)
439 2bov_A RAla, RAS-related prote 90.5 0.19 6.4E-06 43.7 3.8 25 223-247 13-37 (206)
440 2p67_A LAO/AO transport system 90.5 0.16 5.6E-06 48.6 3.6 25 222-246 54-78 (341)
441 2o52_A RAS-related protein RAB 90.4 0.14 4.9E-06 44.5 3.0 24 224-247 25-48 (200)
442 1tq4_A IIGP1, interferon-induc 90.4 0.16 5.4E-06 50.0 3.5 23 224-246 69-91 (413)
443 2gza_A Type IV secretion syste 90.4 0.12 4.2E-06 49.9 2.7 23 225-247 176-198 (361)
444 3reg_A RHO-like small GTPase; 90.4 0.14 4.9E-06 44.2 3.0 24 224-247 23-46 (194)
445 2a5j_A RAS-related protein RAB 90.4 0.14 5E-06 44.1 3.0 24 224-247 21-44 (191)
446 3oes_A GTPase rhebl1; small GT 90.4 0.14 4.8E-06 44.6 2.9 24 224-247 24-47 (201)
447 2b6h_A ADP-ribosylation factor 90.3 0.14 4.7E-06 44.4 2.7 23 225-247 30-52 (192)
448 2h17_A ADP-ribosylation factor 90.3 0.15 5E-06 43.6 2.9 23 225-247 22-44 (181)
449 2g3y_A GTP-binding protein GEM 90.3 0.15 5.3E-06 45.1 3.1 22 225-246 38-59 (211)
450 1ega_A Protein (GTP-binding pr 90.3 0.16 5.6E-06 47.6 3.5 25 223-247 7-31 (301)
451 3tkl_A RAS-related protein RAB 90.3 0.15 5.1E-06 44.0 3.0 25 223-247 15-39 (196)
452 3fdi_A Uncharacterized protein 90.3 0.15 5.1E-06 44.8 3.0 22 225-246 7-28 (201)
453 2zts_A Putative uncharacterize 90.3 0.15 5.2E-06 46.0 3.1 48 225-275 31-78 (251)
454 2p5s_A RAS and EF-hand domain 90.2 0.15 5.2E-06 44.3 2.9 24 224-247 28-51 (199)
455 3dz8_A RAS-related protein RAB 90.2 0.14 4.8E-06 44.1 2.7 23 225-247 24-46 (191)
456 3lxx_A GTPase IMAP family memb 90.2 0.2 6.7E-06 45.2 3.8 25 223-247 28-52 (239)
457 1z06_A RAS-related protein RAB 90.2 0.15 5.3E-06 43.8 2.9 24 224-247 20-43 (189)
458 2il1_A RAB12; G-protein, GDP, 90.2 0.14 4.8E-06 44.3 2.7 23 225-247 27-49 (192)
459 1g8f_A Sulfate adenylyltransfe 90.2 0.23 8E-06 50.1 4.6 25 223-247 394-418 (511)
460 3io3_A DEHA2D07832P; chaperone 90.1 0.34 1.2E-05 46.5 5.6 25 222-246 16-40 (348)
461 2j1l_A RHO-related GTP-binding 90.1 0.16 5.3E-06 44.9 3.0 23 225-247 35-57 (214)
462 1moz_A ARL1, ADP-ribosylation 90.1 0.15 5.1E-06 43.4 2.8 24 224-247 18-41 (183)
463 3iev_A GTP-binding protein ERA 90.0 0.2 7E-06 47.2 3.9 26 222-247 8-33 (308)
464 1x3s_A RAS-related protein RAB 90.0 0.16 5.5E-06 43.7 3.0 23 225-247 16-38 (195)
465 3tqf_A HPR(Ser) kinase; transf 90.0 0.19 6.6E-06 42.7 3.2 22 225-246 17-38 (181)
466 3iqw_A Tail-anchored protein t 90.0 0.39 1.3E-05 45.8 5.8 24 223-246 15-38 (334)
467 2bcg_Y Protein YP2, GTP-bindin 90.0 0.16 5.3E-06 44.4 2.8 25 223-247 7-31 (206)
468 2gf0_A GTP-binding protein DI- 90.0 0.15 5.2E-06 44.1 2.7 24 224-247 8-31 (199)
469 2obl_A ESCN; ATPase, hydrolase 89.9 0.15 5.3E-06 48.9 3.0 23 225-247 72-94 (347)
470 4hlc_A DTMP kinase, thymidylat 89.9 0.26 8.9E-06 43.4 4.2 23 225-247 3-25 (205)
471 3k53_A Ferrous iron transport 89.9 0.2 6.9E-06 46.2 3.6 23 225-247 4-26 (271)
472 1f2t_A RAD50 ABC-ATPase; DNA d 89.9 0.21 7.3E-06 41.4 3.5 21 225-245 24-44 (149)
473 3cr8_A Sulfate adenylyltranfer 89.8 0.14 4.9E-06 52.3 2.8 23 225-247 370-392 (552)
474 2atx_A Small GTP binding prote 89.6 0.17 6E-06 43.6 2.9 23 225-247 19-41 (194)
475 2fv8_A H6, RHO-related GTP-bin 89.6 0.17 6E-06 44.3 2.9 23 225-247 26-48 (207)
476 2qag_B Septin-6, protein NEDD5 89.6 0.16 5.6E-06 50.0 2.9 21 227-247 45-65 (427)
477 1bif_A 6-phosphofructo-2-kinas 89.5 0.19 6.5E-06 50.5 3.4 24 224-247 39-62 (469)
478 2hup_A RAS-related protein RAB 89.5 0.18 6.1E-06 44.0 2.9 25 223-247 28-52 (201)
479 2pt7_A CAG-ALFA; ATPase, prote 89.5 0.14 4.6E-06 48.9 2.2 106 225-345 172-277 (330)
480 2j0v_A RAC-like GTP-binding pr 89.5 0.18 6.1E-06 44.3 2.9 24 224-247 9-32 (212)
481 2f7s_A C25KG, RAS-related prot 89.4 0.21 7E-06 44.0 3.2 24 224-247 25-48 (217)
482 1m8p_A Sulfate adenylyltransfe 89.4 0.21 7.2E-06 51.4 3.7 26 222-247 394-419 (573)
483 2h57_A ADP-ribosylation factor 89.4 0.14 4.8E-06 44.1 2.0 24 225-248 22-45 (190)
484 2fu5_C RAS-related protein RAB 89.4 0.12 4E-06 44.2 1.4 24 224-247 8-31 (183)
485 2gco_A H9, RHO-related GTP-bin 89.3 0.19 6.4E-06 43.8 2.9 23 225-247 26-48 (201)
486 3q3j_B RHO-related GTP-binding 89.3 0.19 6.6E-06 44.3 3.0 23 225-247 28-50 (214)
487 1jwy_B Dynamin A GTPase domain 89.3 0.4 1.4E-05 45.1 5.3 26 222-247 22-47 (315)
488 4dhe_A Probable GTP-binding pr 89.2 0.15 5.3E-06 45.1 2.2 26 223-248 28-53 (223)
489 2npi_A Protein CLP1; CLP1-PCF1 89.2 0.15 5.2E-06 50.9 2.4 23 225-247 139-161 (460)
490 1x6v_B Bifunctional 3'-phospho 89.1 0.24 8E-06 51.4 3.8 24 223-246 51-74 (630)
491 2j9r_A Thymidine kinase; TK1, 89.1 0.23 7.8E-06 43.9 3.2 106 225-342 29-137 (214)
492 1zcb_A G alpha I/13; GTP-bindi 89.1 0.24 8.2E-06 47.8 3.6 22 223-244 32-53 (362)
493 3ch4_B Pmkase, phosphomevalona 89.0 0.28 9.5E-06 42.9 3.6 24 223-246 10-33 (202)
494 1h65_A Chloroplast outer envel 88.9 0.46 1.6E-05 43.6 5.3 25 224-248 39-63 (270)
495 2qag_C Septin-7; cell cycle, c 88.8 0.2 6.8E-06 49.4 2.9 21 227-247 34-54 (418)
496 2xtp_A GTPase IMAP family memb 88.8 0.28 9.6E-06 44.7 3.8 25 223-247 21-45 (260)
497 3euj_A Chromosome partition pr 88.7 0.23 7.9E-06 49.7 3.2 22 225-246 30-51 (483)
498 1wf3_A GTP-binding protein; GT 88.6 0.27 9.3E-06 46.1 3.6 25 223-247 6-30 (301)
499 2x77_A ADP-ribosylation factor 88.6 0.17 5.9E-06 43.4 2.0 23 225-247 23-45 (189)
500 3ozx_A RNAse L inhibitor; ATP 88.4 0.22 7.6E-06 50.8 3.0 23 225-247 295-317 (538)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=5.1e-42 Score=358.07 Aligned_cols=252 Identities=17% Similarity=0.241 Sum_probs=208.9
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHc--CcccccCcCeEEEEEecCCC--CHHHHHH
Q 046770 198 YGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYN--DSRVQCHFDLKAWTYVSQDF--DIIRVTK 273 (475)
Q Consensus 198 vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~--~~~~~~~F~~~~wv~v~~~~--~~~~~l~ 273 (475)
|||+.++++|.++|.. ... ...++|+|+||||+||||||+++|+ +.+++.+|++++||++++.+ ++..++.
T Consensus 131 ~GR~~~~~~l~~~L~~-~~~----~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~ 205 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDE-MCD----LDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFT 205 (549)
T ss_dssp CCCHHHHHHHHHHHHH-HTT----SSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHH
T ss_pred CCchHHHHHHHHHHhc-ccC----CCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHH
Confidence 5999999999999976 211 4679999999999999999999998 67889999999999999985 8999999
Q ss_pred HHHHHhhcCCC-------CCCChHHHHHHHHHHhCCc-eEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCChHH
Q 046770 274 SILRSVAMGIV-------DHNDLNLLQWKLKKQLFGK-RFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNADA 345 (475)
Q Consensus 274 ~il~~l~~~~~-------~~~~~~~l~~~l~~~l~~k-r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v 345 (475)
.|+.+++.... ...+...+...+++.|.++ ||||||||||+.+...|... +||+||||||+..+
T Consensus 206 ~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~~--------~gs~ilvTTR~~~v 277 (549)
T 2a5y_B 206 DILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQE--------LRLRCLVTTRDVEI 277 (549)
T ss_dssp HHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHH--------TTCEEEEEESBGGG
T ss_pred HHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhccccc--------CCCEEEEEcCCHHH
Confidence 99999986521 2234567788999999996 99999999998643334432 69999999999999
Q ss_pred HHhcC-CCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHhcCCCChhHHHHHHh
Q 046770 346 ALIMG-TVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCLLHGKYDPSDWESVLN 424 (475)
Q Consensus 346 ~~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~~~~~~w~~~l~ 424 (475)
+..++ ...+|+|++|+.+++|+||.++++... .++.+.+++.+|+++|+|+||||+++|+.|+.+ + .+|...+.
T Consensus 278 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~ 352 (549)
T 2a5y_B 278 SNAASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLN 352 (549)
T ss_dssp GGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHH
T ss_pred HHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhH
Confidence 98776 336799999999999999999987643 246788999999999999999999999999876 3 34444555
Q ss_pred ccccccCCCccchHHHHHHhhhcCChhHHHHhh-----------hhcccCCCcccC
Q 046770 425 SRIWDLSQGRCDIVHTLALSYHYLSRPLKKCFA-----------YCSLFPKDYEFQ 469 (475)
Q Consensus 425 ~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~-----------~~sifp~~~~i~ 469 (475)
+..+.. ....+..+|.+||++||+++|.||+ |||+||+++.|+
T Consensus 353 ~~l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~ 406 (549)
T 2a5y_B 353 NKLESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP 406 (549)
T ss_dssp HHHHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE
T ss_pred HHhhcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee
Confidence 444432 2345888999999999999999999 999999999987
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=3.9e-35 Score=312.17 Aligned_cols=241 Identities=20% Similarity=0.214 Sum_probs=190.3
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCe-EEEEEecCCCCHHHHHHH
Q 046770 196 KVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDL-KAWTYVSQDFDIIRVTKS 274 (475)
Q Consensus 196 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~v~~~~~~~~~l~~ 274 (475)
..+||+.++++|.++|.. . ...++|+|+||||+||||||+++|++.++..+|+. ++|+++++.++...++..
T Consensus 129 ~~VGRe~eLeeL~elL~~-~------d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~ 201 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLE-L------RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHH-C------CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhc-c------CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHH
Confidence 349999999999999976 2 23689999999999999999999987778899986 999999999998888888
Q ss_pred HHHHhhcCC---CCC--------CChHHHHHHHHHHh---CCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEec
Q 046770 275 ILRSVAMGI---VDH--------NDLNLLQWKLKKQL---FGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITT 340 (475)
Q Consensus 275 il~~l~~~~---~~~--------~~~~~l~~~l~~~l---~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt 340 (475)
++..+.... ... .+.+.+...+++.| .++|+||||||+|+ ...|..+. .||+|||||
T Consensus 202 Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd--~eqLe~f~-------pGSRILVTT 272 (1221)
T 1vt4_I 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNAFN-------LSCKILLTT 272 (1221)
T ss_dssp HHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC--HHHHHHHH-------SSCCEEEEC
T ss_pred HHHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh--HHHHHhhC-------CCeEEEEec
Confidence 877543211 111 12345566777765 78999999999998 35666542 689999999
Q ss_pred CChHHHHhcCCCceeeCC------CCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 046770 341 RNADAALIMGTVQAYPLK------GLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCLLHGKY 414 (475)
Q Consensus 341 R~~~v~~~~~~~~~~~l~------~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~~ 414 (475)
|+..++..+.....+.++ +|+.+|+++||.+.. ... . .++..+| |+|+||||+++|+.|+.+.
T Consensus 273 Rd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~----~---eeL~~eI---CgGLPLALkLaGs~Lr~k~ 341 (1221)
T 1vt4_I 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR----P---QDLPREV---LTTNPRRLSIIAESIRDGL 341 (1221)
T ss_dssp SCSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC----T---TTHHHHH---CCCCHHHHHHHHHHHHHSC
T ss_pred cChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC----H---HHHHHHH---hCCCHHHHHHHHHHHhCCC
Confidence 999988644433456666 999999999999884 221 1 1223333 9999999999999999883
Q ss_pred -ChhHHHHHHhccccccCCCccchHHHHHHhhhcCChhH-HHHhhhhcccCCCcccCCccc
Q 046770 415 -DPSDWESVLNSRIWDLSQGRCDIVHTLALSYHYLSRPL-KKCFAYCSLFPKDYEFQEEET 473 (475)
Q Consensus 415 -~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~-k~cf~~~sifp~~~~i~~~~L 473 (475)
+.++|... ....+..+|.+||+.||++. |+||+|||+||+++.|+++.|
T Consensus 342 ~s~eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elL 392 (1221)
T 1vt4_I 342 ATWDNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392 (1221)
T ss_dssp SSHHHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHH
T ss_pred CCHHHHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence 57788653 23569999999999999999 999999999999999987654
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=9.9e-35 Score=331.55 Aligned_cols=261 Identities=20% Similarity=0.282 Sum_probs=203.8
Q ss_pred cccccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCccc-ccCc-CeEEEEEecCCCC--
Q 046770 192 VHEAKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRV-QCHF-DLKAWTYVSQDFD-- 267 (475)
Q Consensus 192 ~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~~F-~~~~wv~v~~~~~-- 267 (475)
...+.|+||+.++++|.++|.. .. ...++|+|+||||+||||||+++|++.+. ..+| +.++|+++++..+
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~-~~-----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 194 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWK-LN-----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSG 194 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHT-TT-----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHH
T ss_pred CCCceeccHHHHHHHHHHHHhh-cc-----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchH
Confidence 3456799999999999999976 22 46789999999999999999999997543 4445 5788999998543
Q ss_pred HHHHHHHHHHHhhcCCC----CCCChHHHHHHHHHHhCCc--eEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecC
Q 046770 268 IIRVTKSILRSVAMGIV----DHNDLNLLQWKLKKQLFGK--RFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTR 341 (475)
Q Consensus 268 ~~~~l~~il~~l~~~~~----~~~~~~~l~~~l~~~l~~k--r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR 341 (475)
....+..++..+..... ...+.+.+...++..+.++ |+||||||+|+. ..|..+ .+||+||||||
T Consensus 195 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~~-------~~~~~ilvTtR 265 (1249)
T 3sfz_A 195 LLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKAF-------DNQCQILLTTR 265 (1249)
T ss_dssp HHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTTT-------CSSCEEEEEES
T ss_pred HHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHhh-------cCCCEEEEEcC
Confidence 44556777777765432 3456788889999999877 999999999864 344332 46899999999
Q ss_pred ChHHHHh-cCCCceeeCCC-CCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHhcCCCChhHH
Q 046770 342 NADAALI-MGTVQAYPLKG-LSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCLLHGKYDPSDW 419 (475)
Q Consensus 342 ~~~v~~~-~~~~~~~~l~~-L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~~~~~~w 419 (475)
++.++.. +.....+++.+ |+.+++++||...++.. .+.+.+++.+|+++|+|+||||+++|++|+.+. ..|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~-----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~ 338 (1249)
T 3sfz_A 266 DKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK-----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRW 338 (1249)
T ss_dssp STTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC-----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCH
T ss_pred CHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC-----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHH
Confidence 9988854 44567899996 99999999999887432 233446788999999999999999999999873 356
Q ss_pred HHHHhcccccc----CC----CccchHHHHHHhhhcCChhHHHHhhhhcccCCCcccCCcccc
Q 046770 420 ESVLNSRIWDL----SQ----GRCDIVHTLALSYHYLSRPLKKCFAYCSLFPKDYEFQEEETI 474 (475)
Q Consensus 420 ~~~l~~~~~~~----~~----~~~~i~~~l~~sy~~L~~~~k~cf~~~sifp~~~~i~~~~Li 474 (475)
...++.+.... .. ....+..+|.+||+.||+++|.||+|||+||+++.|+++.++
T Consensus 339 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~ 401 (1249)
T 3sfz_A 339 AYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLC 401 (1249)
T ss_dssp HHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHH
T ss_pred HHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHH
Confidence 66555432211 11 114689999999999999999999999999999999877654
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.98 E-value=4e-32 Score=286.66 Aligned_cols=256 Identities=21% Similarity=0.274 Sum_probs=191.7
Q ss_pred cccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCccc-ccCc-CeEEEEEecCCCCHHHH
Q 046770 194 EAKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRV-QCHF-DLKAWTYVSQDFDIIRV 271 (475)
Q Consensus 194 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~~F-~~~~wv~v~~~~~~~~~ 271 (475)
.+.||||+.++++|.++|.. .. ...++|+|+|+||+||||||..++++..+ ..+| +.++|++++.. +...+
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~-~~-----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~ 195 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSK-LK-----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGL 195 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTT-ST-----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHH
T ss_pred CCeecccHHHHHHHHHHHhc-cc-----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHH
Confidence 35699999999999999975 21 45689999999999999999999997655 7789 58999999875 33333
Q ss_pred HHHH---HHHhhcC----CCCCCChHHHHHHHHHHhCC--ceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCC
Q 046770 272 TKSI---LRSVAMG----IVDHNDLNLLQWKLKKQLFG--KRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRN 342 (475)
Q Consensus 272 l~~i---l~~l~~~----~~~~~~~~~l~~~l~~~l~~--kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 342 (475)
+..+ +..+... .....+.+.+...+...+.+ +++||||||+|+. ..+. .+ ..+++||||||+
T Consensus 196 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~~l~----~l---~~~~~ilvTsR~ 266 (591)
T 1z6t_A 196 LMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--WVLK----AF---DSQCQILLTTRD 266 (591)
T ss_dssp HHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--HHHH----TT---CSSCEEEEEESC
T ss_pred HHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--HHHH----Hh---cCCCeEEEECCC
Confidence 3333 3444421 12345667778888888865 7899999999863 2222 22 468999999999
Q ss_pred hHHHHhcCCCceee---CCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHhcCCCChhHH
Q 046770 343 ADAALIMGTVQAYP---LKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCLLHGKYDPSDW 419 (475)
Q Consensus 343 ~~v~~~~~~~~~~~---l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~~~~~~w 419 (475)
..++..+. ...++ +++|+.+++++||...++... ....+.+.+|+++|+|+||||..+|..|+.+. ..|
T Consensus 267 ~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~-----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w 338 (591)
T 1z6t_A 267 KSVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMKK-----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRW 338 (591)
T ss_dssp GGGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG-----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCH
T ss_pred cHHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCCc-----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhH
Confidence 88776543 23333 369999999999999876421 22235678899999999999999999998873 357
Q ss_pred HHHHhcccccc--------CCCccchHHHHHHhhhcCChhHHHHhhhhcccCCCcccCCccc
Q 046770 420 ESVLNSRIWDL--------SQGRCDIVHTLALSYHYLSRPLKKCFAYCSLFPKDYEFQEEET 473 (475)
Q Consensus 420 ~~~l~~~~~~~--------~~~~~~i~~~l~~sy~~L~~~~k~cf~~~sifp~~~~i~~~~L 473 (475)
...++...... ......+..++..||+.||++.|.||++||+||+++.|+.+.|
T Consensus 339 ~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l 400 (591)
T 1z6t_A 339 EYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVL 400 (591)
T ss_dssp HHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHH
T ss_pred HHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHH
Confidence 76665432111 1122468899999999999999999999999999998876543
No 5
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.71 E-value=1.3e-17 Score=135.01 Aligned_cols=79 Identities=23% Similarity=0.381 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhh--cccchHHHHHHHHHHHhhhhhhhhhhhHHHH
Q 046770 26 SIEMLLEKLASEAVVLFARRERIHDYLVQWKKTLEKIKAVIEDAEEK--QTREESVKMWLYELQNLAYDVEDLLGEFETE 103 (475)
Q Consensus 26 ~~~~l~~~l~~~~~~~~~~~~~v~~~~~~l~~~l~~~~~~l~~a~~~--~~~~~~v~~Wl~~lrd~ayd~eD~lD~~~~~ 103 (475)
+++.++++|++.+..++....+|++++++|+++|++|++||.+++.+ +..|++++.|+++|||+|||+|||||+|.++
T Consensus 2 ~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~ 81 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQ 81 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888888999999999999999999999999999999987 5678999999999999999999999999988
Q ss_pred H
Q 046770 104 A 104 (475)
Q Consensus 104 ~ 104 (475)
.
T Consensus 82 ~ 82 (115)
T 3qfl_A 82 V 82 (115)
T ss_dssp H
T ss_pred h
Confidence 6
No 6
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.66 E-value=7.6e-16 Score=150.97 Aligned_cols=198 Identities=15% Similarity=0.183 Sum_probs=131.5
Q ss_pred ccccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCC------
Q 046770 193 HEAKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDF------ 266 (475)
Q Consensus 193 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~------ 266 (475)
.+..|+||+.+++.|.+++.. + +++.|+|++|+|||||++++++.. . .+|+++....
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~--------~--~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~ 72 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN--------Y--PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHI 72 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH--------C--SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCB
T ss_pred ChHhcCChHHHHHHHHHHHhc--------C--CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCC
Confidence 345799999999999999865 2 589999999999999999998742 1 6777765432
Q ss_pred CHHHHHHHHHHHhhc-----------------CCC-CCCChHHHHHHHHHHhCC-ceEEEEEECCCCCCh------hhHh
Q 046770 267 DIIRVTKSILRSVAM-----------------GIV-DHNDLNLLQWKLKKQLFG-KRFLLVLDDVWNENY------NDWI 321 (475)
Q Consensus 267 ~~~~~l~~il~~l~~-----------------~~~-~~~~~~~l~~~l~~~l~~-kr~LlVlDdv~~~~~------~~~~ 321 (475)
+...++..+...+.. ... ...+...+...+.+.... ++++|||||++..+. ..+.
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~ 152 (350)
T 2qen_A 73 TREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELL 152 (350)
T ss_dssp CHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHH
Confidence 455666666655432 000 123456666666666543 389999999976321 1222
Q ss_pred HhhCcCCCCCCCcEEEEecCChHH-HHh----------cC-CCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHH
Q 046770 322 DLSRPFQDGAPGSKIIITTRNADA-ALI----------MG-TVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIG 389 (475)
Q Consensus 322 ~l~~~l~~~~~gs~ilvTtR~~~v-~~~----------~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~ 389 (475)
.++..+.....+..+|+|++.... ... .+ ....+++.+|+.+++.+++.......+. .. ..+..
T Consensus 153 ~~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~-~~---~~~~~ 228 (350)
T 2qen_A 153 ALFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL-DV---PENEI 228 (350)
T ss_dssp HHHHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC-CC---CHHHH
T ss_pred HHHHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC-CC---CHHHH
Confidence 222222111247889999987653 221 11 1247899999999999999875422111 11 13567
Q ss_pred HHHHHhcCCchHHHHHHHHHhc
Q 046770 390 AKIVIKCNGLPLAAKALGCLLH 411 (475)
Q Consensus 390 ~~I~~~c~G~PLai~~~~~~L~ 411 (475)
..|++.|+|+|+++..++..+.
T Consensus 229 ~~i~~~tgG~P~~l~~~~~~~~ 250 (350)
T 2qen_A 229 EEAVELLDGIPGWLVVFGVEYL 250 (350)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHh
Confidence 7899999999999999987653
No 7
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.63 E-value=2e-15 Score=151.56 Aligned_cols=255 Identities=13% Similarity=0.009 Sum_probs=156.8
Q ss_pred ccccccchhHHHHHHHH-hcCCCCCCCCCccEEEEE--EccCCCcHHHHHHHHHcCcccc---cCcC-eEEEEEecCCCC
Q 046770 195 AKVYGRSKEREEIVELL-LKEDGTSHNNNHFSVVSI--IGMGGLGKTTLAQLVYNDSRVQ---CHFD-LKAWTYVSQDFD 267 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L-~~~~~~~~~~~~~~vv~I--~G~gGiGKTtLA~~v~~~~~~~---~~F~-~~~wv~v~~~~~ 267 (475)
..++||+.+++.|.++| .....+.. ...+.+.| +|++|+||||||+.+++..... ..+. ..+|+++....+
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~--~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAG--LSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSC--BCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCC--CCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCC
Confidence 57999999999999988 43111000 12346667 9999999999999999843221 1122 357888777788
Q ss_pred HHHHHHHHHHHhhcCCCC-CCChHHHHHHHHHHhC--CceEEEEEECCCCC------ChhhHhHhhCcCCCC---C--CC
Q 046770 268 IIRVTKSILRSVAMGIVD-HNDLNLLQWKLKKQLF--GKRFLLVLDDVWNE------NYNDWIDLSRPFQDG---A--PG 333 (475)
Q Consensus 268 ~~~~l~~il~~l~~~~~~-~~~~~~l~~~l~~~l~--~kr~LlVlDdv~~~------~~~~~~~l~~~l~~~---~--~g 333 (475)
...++..++.+++...+. ..+...+...+.+.+. +++++|||||++.. +...+..+...+... . .+
T Consensus 100 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 179 (412)
T 1w5s_A 100 LYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNR 179 (412)
T ss_dssp HHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCB
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCce
Confidence 899999999998765332 3345556666666664 77999999999752 123344333333211 2 34
Q ss_pred cEEEEecCChHHHH--------hcC-CCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcC------C
Q 046770 334 SKIIITTRNADAAL--------IMG-TVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCN------G 398 (475)
Q Consensus 334 s~ilvTtR~~~v~~--------~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~------G 398 (475)
..+|+||+...+.. ... ....+.+.+|+.++++++|...+...... .....+....|++.|+ |
T Consensus 180 v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~G 257 (412)
T 1w5s_A 180 IGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRD--TVWEPRHLELISDVYGEDKGGDG 257 (412)
T ss_dssp EEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCT--TSCCHHHHHHHHHHHCGGGTSCC
T ss_pred EEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCC--CCCChHHHHHHHHHHHHhccCCC
Confidence 56888887554321 111 12339999999999999997653211100 1112456778999999 9
Q ss_pred chHHHHHHHHHhc-----CC---CChhHHHHHHhccccccCCCccchHHHHHHhhhcCChhHHHHhhhhccc
Q 046770 399 LPLAAKALGCLLH-----GK---YDPSDWESVLNSRIWDLSQGRCDIVHTLALSYHYLSRPLKKCFAYCSLF 462 (475)
Q Consensus 399 ~PLai~~~~~~L~-----~~---~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~sif 462 (475)
+|..+..+..... .. -+.+.+..++..... ...+.-++..||++.+.++..++.+
T Consensus 258 ~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~---------~~~~~~~l~~l~~~~~~~l~aia~l 320 (412)
T 1w5s_A 258 SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA---------ASIQTHELEALSIHELIILRLIAEA 320 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---------cchHHHHHHcCCHHHHHHHHHHHHH
Confidence 9976665544321 11 223444444332110 1234446678899888888888764
No 8
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.61 E-value=7.7e-15 Score=144.11 Aligned_cols=238 Identities=13% Similarity=0.124 Sum_probs=143.3
Q ss_pred ccccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCC-----CC
Q 046770 193 HEAKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQD-----FD 267 (475)
Q Consensus 193 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~-----~~ 267 (475)
.+..|+||+++++.|.+ +.. +++.|+|++|+|||||++.+++.. .. ..+|+++... .+
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~-----------~~v~i~G~~G~GKT~L~~~~~~~~--~~---~~~~~~~~~~~~~~~~~ 73 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA-----------PITLVLGLRRTGKSSIIKIGINEL--NL---PYIYLDLRKFEERNYIS 73 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS-----------SEEEEEESTTSSHHHHHHHHHHHH--TC---CEEEEEGGGGTTCSCCC
T ss_pred CHHHhcChHHHHHHHHH-hcC-----------CcEEEECCCCCCHHHHHHHHHHhc--CC---CEEEEEchhhccccCCC
Confidence 34579999999999999 632 489999999999999999998742 21 2578877642 34
Q ss_pred HHHHHHHHHHHhhc-------------CC-----C-----------CCCChHHHHHHHHHHhCCceEEEEEECCCCCCh-
Q 046770 268 IIRVTKSILRSVAM-------------GI-----V-----------DHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENY- 317 (475)
Q Consensus 268 ~~~~l~~il~~l~~-------------~~-----~-----------~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~- 317 (475)
...++..+...+.. .. + .......+...+.+... ++++|||||++..+.
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~ 152 (357)
T 2fna_A 74 YKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKL 152 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGC
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhcc
Confidence 44454444443311 00 0 12345555555655433 489999999965321
Q ss_pred --hhHhHhhCcCCCCCCCcEEEEecCChHH-HHh---------c-CC-CceeeCCCCCHHHHHHHHhhcccCCCCCCCCc
Q 046770 318 --NDWIDLSRPFQDGAPGSKIIITTRNADA-ALI---------M-GT-VQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQ 383 (475)
Q Consensus 318 --~~~~~l~~~l~~~~~gs~ilvTtR~~~v-~~~---------~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~ 383 (475)
..|..++..+.....+..+|+|++.... ... . +. ...+.+.+|+.+++.+++......... . ..
T Consensus 153 ~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~-~~ 230 (357)
T 2fna_A 153 RGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI-D-FK 230 (357)
T ss_dssp TTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC-C-CC
T ss_pred CchhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC-C-CC
Confidence 1222222222221246799999998653 221 1 11 257899999999999999875421111 1 11
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHhcCCCChhHHHHH-HhccccccCCCccchHHHHH-Hhh--hcCChhHHHHhhhh
Q 046770 384 PLKEIGAKIVIKCNGLPLAAKALGCLLHGKYDPSDWESV-LNSRIWDLSQGRCDIVHTLA-LSY--HYLSRPLKKCFAYC 459 (475)
Q Consensus 384 ~~~~~~~~I~~~c~G~PLai~~~~~~L~~~~~~~~w~~~-l~~~~~~~~~~~~~i~~~l~-~sy--~~L~~~~k~cf~~~ 459 (475)
.. ..|++.|+|+|+++..++..+....+...|..- .+.. ...+..-+. +.+ ..||+..+..+..+
T Consensus 231 ~~----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~l~~~~~~~l~~l 299 (357)
T 2fna_A 231 DY----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYA-------KKLILKEFENFLHGREIARKRYLNIMRTL 299 (357)
T ss_dssp CH----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHH-------HHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred cH----HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHH-------HHHHHHHHHHHhhccccccHHHHHHHHHH
Confidence 11 679999999999999998876543233333221 1100 000111111 111 16788888888888
Q ss_pred cc
Q 046770 460 SL 461 (475)
Q Consensus 460 si 461 (475)
|.
T Consensus 300 a~ 301 (357)
T 2fna_A 300 SK 301 (357)
T ss_dssp TT
T ss_pred Hc
Confidence 87
No 9
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.51 E-value=5.9e-13 Score=132.20 Aligned_cols=246 Identities=13% Similarity=0.003 Sum_probs=156.5
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccc----cC--cCeEEEEEecCCC-C
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQ----CH--FDLKAWTYVSQDF-D 267 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----~~--F~~~~wv~v~~~~-~ 267 (475)
..++||+.+++++.+++...... ...+.+.|+|++|+||||||+.+++..... .. ....+|+++.... +
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~----~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 95 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN----EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGT 95 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT----CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSC
T ss_pred CCCCChHHHHHHHHHHHHHHHcC----CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCC
Confidence 67999999999999887542111 334689999999999999999999843111 01 2356788877766 8
Q ss_pred HHHHHHHHHHHhhcCCC--CCCChHHHHHHHHHHhCCceEEEEEECCCCCCh----hh-HhHhhCcCCCCCCCcEEEEec
Q 046770 268 IIRVTKSILRSVAMGIV--DHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENY----ND-WIDLSRPFQDGAPGSKIIITT 340 (475)
Q Consensus 268 ~~~~l~~il~~l~~~~~--~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~----~~-~~~l~~~l~~~~~gs~ilvTt 340 (475)
...++..++.++..... .......+...+...+..++.+|||||++.... .. +..+.... .+..+|+||
T Consensus 96 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t 171 (384)
T 2qby_B 96 PQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMIS 171 (384)
T ss_dssp HHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEE
Confidence 88899999988854322 223345667778888877766999999964321 12 22333322 678889998
Q ss_pred CChHHH----H-h-cCCCceeeCCCCCHHHHHHHHhhcccC-CCCCCCCchHHHHHHHHHHhcC---CchHHH-HHHHHH
Q 046770 341 RNADAA----L-I-MGTVQAYPLKGLSNDDCMCLFTQHSLE-TRDFSMHQPLKEIGAKIVIKCN---GLPLAA-KALGCL 409 (475)
Q Consensus 341 R~~~v~----~-~-~~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~~~~~~I~~~c~---G~PLai-~~~~~~ 409 (475)
+..... . . ......+.+.+++.++..+++...+.. -...... .+....|++.|+ |.|..+ .++-..
T Consensus 172 ~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a 248 (384)
T 2qby_B 172 NDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRA 248 (384)
T ss_dssp SSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred CCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 864211 0 0 011238999999999999999987531 1111222 234556777777 988743 333322
Q ss_pred h--c---CCCChhHHHHHHhccccccCCCccchHHHHHHhhhcCChhHHHHhhhhcc
Q 046770 410 L--H---GKYDPSDWESVLNSRIWDLSQGRCDIVHTLALSYHYLSRPLKKCFAYCSL 461 (475)
Q Consensus 410 L--~---~~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~si 461 (475)
. . ..-+.+.+..++.... ...+..++..|+++.+..+..++.
T Consensus 249 ~~~a~~~~~i~~~~v~~~~~~~~----------~~~~~~~~~~l~~~~~~~l~al~~ 295 (384)
T 2qby_B 249 AQLASGGGIIRKEHVDKAIVDYE----------QERLIEAVKALPFHYKLALRSLIE 295 (384)
T ss_dssp HHHTTSSSCCCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHT
T ss_pred HHHhcCCCccCHHHHHHHHHHHh----------cchHHHHHHcCCHHHHHHHHHHHH
Confidence 2 1 1245667776665421 134566777888877776665554
No 10
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.45 E-value=3.6e-12 Score=126.44 Aligned_cols=249 Identities=13% Similarity=0.042 Sum_probs=152.7
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccc----cCcCeEEEEEecCCCCHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQ----CHFDLKAWTYVSQDFDIIR 270 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv~v~~~~~~~~ 270 (475)
..++||+.+++.+..++...-.. ...+.+.|+|++|+||||||+.+++..... ..-...+|+++....+...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~----~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 94 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRG----EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYR 94 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSS----CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC----CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHH
Confidence 57999999999999998552111 234678999999999999999998743111 0012457888888888899
Q ss_pred HHHHHHHHhhcCCCC-CCChHHHHHHHHHHh--CCceEEEEEECCCCCCh-----hhHhHhhCcCCCC--CCCcEEEEec
Q 046770 271 VTKSILRSVAMGIVD-HNDLNLLQWKLKKQL--FGKRFLLVLDDVWNENY-----NDWIDLSRPFQDG--APGSKIIITT 340 (475)
Q Consensus 271 ~l~~il~~l~~~~~~-~~~~~~l~~~l~~~l--~~kr~LlVlDdv~~~~~-----~~~~~l~~~l~~~--~~gs~ilvTt 340 (475)
++..++.+++...+. ......+...+...+ .+++.+|||||++.... ..+..+....... ..+..+|.||
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t 174 (387)
T 2v1u_A 95 VASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGIT 174 (387)
T ss_dssp HHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEEC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEE
Confidence 999999998664332 334556666666666 45689999999965321 1122222222111 3456778887
Q ss_pred CChHHH-----HhcCC--CceeeCCCCCHHHHHHHHhhcccCC-CCCCCCchHHHHHHHHHHhcC---CchHHHH-HHHH
Q 046770 341 RNADAA-----LIMGT--VQAYPLKGLSNDDCMCLFTQHSLET-RDFSMHQPLKEIGAKIVIKCN---GLPLAAK-ALGC 408 (475)
Q Consensus 341 R~~~v~-----~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~~~~~~I~~~c~---G~PLai~-~~~~ 408 (475)
+..... ..... ...+.+.+++.++..+++...+... ......+ +....|++.++ |.|..+. ++..
T Consensus 175 ~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~ 251 (387)
T 2v1u_A 175 NSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRV 251 (387)
T ss_dssp SCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred CCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 764221 11111 2578999999999999999775310 1111222 34456777777 9994433 3222
Q ss_pred Hhc-----C--CCChhHHHHHHhccccccCCCccchHHHHHHhhhcCChhHHHHhhhhc
Q 046770 409 LLH-----G--KYDPSDWESVLNSRIWDLSQGRCDIVHTLALSYHYLSRPLKKCFAYCS 460 (475)
Q Consensus 409 ~L~-----~--~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s 460 (475)
... . .-+.+.+..++.... ...+.-++..||.+.+..+..+.
T Consensus 252 a~~~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~~l~a~~ 300 (387)
T 2v1u_A 252 AGEIAERRREERVRREHVYSARAEIE----------RDRVSEVVRTLPLHAKLVLLSIM 300 (387)
T ss_dssp HHHHHHHTTCSCBCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHH
Confidence 211 1 134556666554321 22455667888888777666555
No 11
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.45 E-value=4e-12 Score=126.35 Aligned_cols=252 Identities=13% Similarity=0.041 Sum_probs=158.9
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccC-cCeEEEEEecCCCCHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCH-FDLKAWTYVSQDFDIIRVTK 273 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-F~~~~wv~v~~~~~~~~~l~ 273 (475)
..++||+.+++.|..++.....+.. ...+.+.|+|++|+|||||++.+++.. ... -...+|++++...+...++.
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~--~~~~~~li~G~~G~GKTtl~~~l~~~~--~~~~~~~~~~i~~~~~~~~~~~~~ 92 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPG--HHYPRATLLGRPGTGKTVTLRKLWELY--KDKTTARFVYINGFIYRNFTAIIG 92 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTT--SSCCEEEEECCTTSSHHHHHHHHHHHH--TTSCCCEEEEEETTTCCSHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCC--CCCCeEEEECCCCCCHHHHHHHHHHHH--hhhcCeeEEEEeCccCCCHHHHHH
Confidence 5799999999999998865211101 233489999999999999999998743 222 12467788778888889999
Q ss_pred HHHHHhhcCCCC-CCChHHHHHHHHHHh--CCceEEEEEECCCCCChhhHhHhhCcCCCCC----CCcEEEEecCChHHH
Q 046770 274 SILRSVAMGIVD-HNDLNLLQWKLKKQL--FGKRFLLVLDDVWNENYNDWIDLSRPFQDGA----PGSKIIITTRNADAA 346 (475)
Q Consensus 274 ~il~~l~~~~~~-~~~~~~l~~~l~~~l--~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~----~gs~ilvTtR~~~v~ 346 (475)
.++..++...+. ......+...+...+ .+++.+|||||++..+......+...+.... .+..+|++|+.....
T Consensus 93 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 93 EIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp HHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred HHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 999888654322 234555666666655 3668999999997766555666655554321 467888888776443
Q ss_pred HhcC-------CCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhc---------CCchHHHHHHHHHh
Q 046770 347 LIMG-------TVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKC---------NGLPLAAKALGCLL 410 (475)
Q Consensus 347 ~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c---------~G~PLai~~~~~~L 410 (475)
.... ....+.+.+++.++..+++...+..... ...-..+....|++.+ +|.|..+..+....
T Consensus 173 ~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a 250 (389)
T 1fnn_A 173 NNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA--EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRS 250 (389)
T ss_dssp HTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC--TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHH
T ss_pred HHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC--CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHH
Confidence 3221 2246999999999999999877532110 0112245677788888 78876555444332
Q ss_pred c------CC--CChhHHHHHHhccccccCCCccchHHHHHHhhhcCChhHHHHhhhhccc
Q 046770 411 H------GK--YDPSDWESVLNSRIWDLSQGRCDIVHTLALSYHYLSRPLKKCFAYCSLF 462 (475)
Q Consensus 411 ~------~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~sif 462 (475)
. .. -+.+....+....... .+.-.+..||.+.+.++..++.+
T Consensus 251 ~~~a~~~~~~~i~~~~v~~~~~~~~~~----------~~~~~l~~l~~~~~~~L~~l~~~ 300 (389)
T 1fnn_A 251 AYAAQQNGRKHIAPEDVRKSSKEVLFG----------ISEEVLIGLPLHEKLFLLAIVRS 300 (389)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHSCC----------CCHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcCHHHHHHHHHHHhhh----------hHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 11 2334444443321110 12233566777777766666544
No 12
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.41 E-value=1.6e-12 Score=128.89 Aligned_cols=248 Identities=14% Similarity=0.054 Sum_probs=150.0
Q ss_pred cccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCc---CeEEEEEecCCCCHHH
Q 046770 194 EAKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHF---DLKAWTYVSQDFDIIR 270 (475)
Q Consensus 194 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~v~~~~~~~~ 270 (475)
+..|+||+.+++.|.+++...-.. .....+.|+|++|+||||||+.+++.. ...+ ...+|+++....+...
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~----~~~~~vli~G~~G~GKTtl~~~l~~~~--~~~~~~~~~~~~i~~~~~~~~~~ 92 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYRE----EKPNNIFIYGLTGTGKTAVVKFVLSKL--HKKFLGKFKHVYINTRQIDTPYR 92 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGT----CCCCCEEEEECTTSSHHHHHHHHHHHH--HHHTCSSCEEEEEEHHHHCSHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcC----CCCCeEEEECCCCCCHHHHHHHHHHHH--HHHhcCCceEEEEECCCCCCHHH
Confidence 367999999999999988642111 234578999999999999999999842 2221 2467787777677778
Q ss_pred HHHHHHHHhhcCCC-CCCChHHHHHHHHHHhC--CceEEEEEECCCCCC----hhhHhHhhCcCCC-CCCCcEEEEecCC
Q 046770 271 VTKSILRSVAMGIV-DHNDLNLLQWKLKKQLF--GKRFLLVLDDVWNEN----YNDWIDLSRPFQD-GAPGSKIIITTRN 342 (475)
Q Consensus 271 ~l~~il~~l~~~~~-~~~~~~~l~~~l~~~l~--~kr~LlVlDdv~~~~----~~~~~~l~~~l~~-~~~gs~ilvTtR~ 342 (475)
++..++.+++.... ...+.......+.+.+. +++.+||||+++... ...+..+...+.. ...+..+|+||+.
T Consensus 93 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~ 172 (386)
T 2qby_A 93 VLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITND 172 (386)
T ss_dssp HHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECC
Confidence 88888777754332 12334555556666553 458999999995421 2233333322211 2345677888876
Q ss_pred hHHHHhcC-------CCceeeCCCCCHHHHHHHHhhcccCCC-CCCCCchHHHHHHHHHHhcC---CchHHHHHHHHHhc
Q 046770 343 ADAALIMG-------TVQAYPLKGLSNDDCMCLFTQHSLETR-DFSMHQPLKEIGAKIVIKCN---GLPLAAKALGCLLH 411 (475)
Q Consensus 343 ~~v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~~~~~~I~~~c~---G~PLai~~~~~~L~ 411 (475)
......+. ....+.+.+++.++..+++.+.+.... .... ..+....|++.++ |.|..+..+.....
T Consensus 173 ~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~ 249 (386)
T 2qby_A 173 VKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVL---PDNVIKLCAALAAREHGDARRALDLLRVSG 249 (386)
T ss_dssp GGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCS---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCC---CHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 54322111 125799999999999999987542111 1112 2345566777777 99985443333221
Q ss_pred ------C--CCChhHHHHHHhccccccCCCccchHHHHHHhhhcCChhHHHHhhhhc
Q 046770 412 ------G--KYDPSDWESVLNSRIWDLSQGRCDIVHTLALSYHYLSRPLKKCFAYCS 460 (475)
Q Consensus 412 ------~--~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s 460 (475)
. .-+.+.+..++.... ...+.-++..||.+.+..+..++
T Consensus 250 ~~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~il~ai~ 296 (386)
T 2qby_A 250 EIAERMKDTKVKEEYVYMAKEEIE----------RDRVRDIILTLPFHSKLVLMAVV 296 (386)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHH----------HHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHhcCCCccCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHH
Confidence 1 134555555544321 12455566777777766665554
No 13
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.41 E-value=2e-12 Score=119.34 Aligned_cols=198 Identities=14% Similarity=0.117 Sum_probs=119.9
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKS 274 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~ 274 (475)
..++||+..++.|..++.. . ...+.+.|+|++|+||||||+.+++.......+... .+....+ ...
T Consensus 23 ~~~~g~~~~~~~l~~~l~~-~------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~---~~~~~~~----~~~ 88 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSL-G------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT---PCGVCDN----CRE 88 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHH-T------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSS---CCSCSHH----HHH
T ss_pred HHHhCcHHHHHHHHHHHHc-C------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC---CCcccHH----HHH
Confidence 4699999999999999876 2 223478999999999999999998743211111000 0000000 000
Q ss_pred HHHHhh-----cCCCCCCChHHHHHHHHHH-----hCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCChH
Q 046770 275 ILRSVA-----MGIVDHNDLNLLQWKLKKQ-----LFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNAD 344 (475)
Q Consensus 275 il~~l~-----~~~~~~~~~~~l~~~l~~~-----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 344 (475)
+..... ...........+. .+.+. ..+++.+|||||++..+...+..+...+.....+..+|+||+...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 89 IEQGRFVDLIEIDAASRTKVEDTR-DLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp HHTTCCSSEEEEETTCGGGHHHHH-HHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred HhccCCcceEEecCcccccHHHHH-HHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 000000 0000001111111 12222 135679999999987666667777666655456788888887643
Q ss_pred HH--HhcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHhc
Q 046770 345 AA--LIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCLLH 411 (475)
Q Consensus 345 v~--~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~ 411 (475)
.. ........+++.+++.++..+++...+..... .. ..+....|++.|+|+|..+..+...+.
T Consensus 168 ~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~---~~~~~~~l~~~~~G~~~~~~~~~~~~~ 232 (250)
T 1njg_A 168 KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI-AH---EPRALQLLARAAEGSLRDALSLTDQAI 232 (250)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC-CB---CHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC-CC---CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 11 12233467999999999999999877643221 11 235567899999999999988776543
No 14
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.35 E-value=9.5e-12 Score=113.16 Aligned_cols=188 Identities=12% Similarity=0.007 Sum_probs=118.1
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcC-eEEEEEecCCCCHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFD-LKAWTYVSQDFDIIRVTK 273 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~l~ 273 (475)
..++|++..++.+.+++.. ...+.+.|+|++|+|||+||+.+++.... ..+. ..+.++.+.......+.
T Consensus 17 ~~~~g~~~~~~~l~~~l~~--------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~- 86 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVER--------KNIPHLLFSGPPGTGKTATAIALARDLFG-ENWRDNFIEMNASDERGIDVVR- 86 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHT--------TCCCCEEEECSTTSSHHHHHHHHHHHHHG-GGGGGGEEEEETTCTTCHHHHH-
T ss_pred HHHcCcHHHHHHHHHHHhC--------CCCCeEEEECCCCCCHHHHHHHHHHHHhc-cccccceEEeccccccChHHHH-
Confidence 4689999999999999976 22234899999999999999999874211 1121 23334444333322221
Q ss_pred HHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCChHH--HHhcCC
Q 046770 274 SILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNADA--ALIMGT 351 (475)
Q Consensus 274 ~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v--~~~~~~ 351 (475)
..+..+..... ...+++.+|||||++......+..+...+.....++.+|+||+.... ......
T Consensus 87 ~~~~~~~~~~~--------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r 152 (226)
T 2chg_A 87 HKIKEFARTAP--------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSR 152 (226)
T ss_dssp HHHHHHHTSCC--------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred HHHHHHhcccC--------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHh
Confidence 22221111100 01256889999999776655555565555444457788988886531 112233
Q ss_pred CceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHh
Q 046770 352 VQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCLL 410 (475)
Q Consensus 352 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L 410 (475)
...+.+.+++.++..+++.+.+..... . ...+....|++.++|.|..+..+...+
T Consensus 153 ~~~i~~~~~~~~~~~~~l~~~~~~~~~-~---~~~~~~~~l~~~~~g~~r~l~~~l~~~ 207 (226)
T 2chg_A 153 CAVFRFKPVPKEAMKKRLLEICEKEGV-K---ITEDGLEALIYISGGDFRKAINALQGA 207 (226)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHTC-C---BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CceeecCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 458999999999999999877643221 1 123566778999999999665544433
No 15
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.21 E-value=6.4e-11 Score=114.41 Aligned_cols=186 Identities=16% Similarity=0.165 Sum_probs=116.9
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCc-CeEEEEEecCCCCHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHF-DLKAWTYVSQDFDIIRVTK 273 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~v~~~~~~~~~l~ 273 (475)
..++|++..++.|..++.. ...+.+.|+|++|+|||++|+.+++... ...+ ...++++.+..... ..++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~--------~~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~-~~i~ 90 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKD--------GNMPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGI-DVVR 90 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHS--------CCCCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSH-HHHH
T ss_pred HHHHCCHHHHHHHHHHHHc--------CCCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccCh-HHHH
Confidence 4689999999999999876 2333489999999999999999987421 1111 12334443333232 2223
Q ss_pred HHHHHhhcCCCCCCChHHHHHHHHHHh-CCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCChHH--HHhcC
Q 046770 274 SILRSVAMGIVDHNDLNLLQWKLKKQL-FGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNADA--ALIMG 350 (475)
Q Consensus 274 ~il~~l~~~~~~~~~~~~l~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v--~~~~~ 350 (475)
.++..+..... .+ .+++.++||||++......+..+...+.....++.+|+||+...- .....
T Consensus 91 ~~~~~~~~~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~s 156 (323)
T 1sxj_B 91 NQIKHFAQKKL--------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQS 156 (323)
T ss_dssp THHHHHHHBCC--------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHT
T ss_pred HHHHHHHhccc--------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHh
Confidence 33332221000 01 356889999999876655566565555444457788888876421 12223
Q ss_pred CCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHH-HHHHHH
Q 046770 351 TVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLA-AKALGC 408 (475)
Q Consensus 351 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLa-i~~~~~ 408 (475)
....+.+.+++.++..+++...+...+. . -..+....|++.|+|.|.. +..+..
T Consensus 157 r~~~i~~~~~~~~~~~~~l~~~~~~~~~-~---~~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 157 QCAILRYSKLSDEDVLKRLLQIIKLEDV-K---YTNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHHHTC-C---BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hceEEeecCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4468999999999999999876532211 1 1135567899999999954 444433
No 16
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.05 E-value=9e-10 Score=106.47 Aligned_cols=189 Identities=13% Similarity=0.046 Sum_probs=116.8
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCc-CeEEEEEecCCCCHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHF-DLKAWTYVSQDFDIIRVTK 273 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~v~~~~~~~~~l~ 273 (475)
.+++|++..++.|..++.. +..+.+.|+|++|+||||+|+.+++.... ..+ ...+.+..+..... ..+.
T Consensus 25 ~~~~g~~~~~~~l~~~l~~--------~~~~~~ll~G~~G~GKT~la~~l~~~l~~-~~~~~~~~~~~~~~~~~~-~~~~ 94 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKT--------GSMPHLLFAGPPGVGKTTAALALARELFG-ENWRHNFLELNASDERGI-NVIR 94 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHH--------TCCCEEEEESCTTSSHHHHHHHHHHHHHG-GGHHHHEEEEETTCHHHH-HTTH
T ss_pred HHhhCCHHHHHHHHHHHHc--------CCCCeEEEECcCCCCHHHHHHHHHHHhcC-CcccCceEEeeccccCch-HHHH
Confidence 3589999999999999876 33345899999999999999999874211 111 12233333221111 1111
Q ss_pred HHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCChHH--HHhcCC
Q 046770 274 SILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNADA--ALIMGT 351 (475)
Q Consensus 274 ~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v--~~~~~~ 351 (475)
..+..+.... ....+++.++|+||++......+..+...+.....++++|+||..... ......
T Consensus 95 ~~~~~~~~~~--------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr 160 (327)
T 1iqp_A 95 EKVKEFARTK--------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR 160 (327)
T ss_dssp HHHHHHHHSC--------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHT
T ss_pred HHHHHHHhhC--------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhh
Confidence 1111111000 011256789999999876666666666655544557888888876431 111112
Q ss_pred CceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHhc
Q 046770 352 VQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCLLH 411 (475)
Q Consensus 352 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~ 411 (475)
...+.+.+++.++...++...+...+. .-..+....|++.++|.|..+..+...+.
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~g~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 161 CAIFRFRPLRDEDIAKRLRYIAENEGL----ELTEEGLQAILYIAEGDMRRAINILQAAA 216 (327)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHTTTC----EECHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CcEEEecCCCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 347899999999999999877643221 12245667899999999997665554443
No 17
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.94 E-value=5.1e-09 Score=100.73 Aligned_cols=184 Identities=10% Similarity=0.018 Sum_probs=115.1
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcC-eEEEEEecCCCCHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFD-LKAWTYVSQDFDIIRVTK 273 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~l~ 273 (475)
.+++|++..++.|.+++.. +..+.+.|+|++|+|||++|+.+++... ...+. ..+.++.+....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~--------~~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~------ 81 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVER--------KNIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERG------ 81 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTT--------TCCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTC------
T ss_pred HHHhCCHHHHHHHHHHHhC--------CCCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccC------
Confidence 3589999999999888765 2233489999999999999999987421 11111 122233332111
Q ss_pred HHHHHhhcCCCCCCChHHHHHHHHHH--h-CCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCChH-H-HHh
Q 046770 274 SILRSVAMGIVDHNDLNLLQWKLKKQ--L-FGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNAD-A-ALI 348 (475)
Q Consensus 274 ~il~~l~~~~~~~~~~~~l~~~l~~~--l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v-~~~ 348 (475)
..........+... + .+++.++||||++.........+...+.....++.+|+||.... + ...
T Consensus 82 ------------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l 149 (319)
T 2chq_A 82 ------------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPI 149 (319)
T ss_dssp ------------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHH
T ss_pred ------------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHH
Confidence 11111111111111 1 25678999999977665566667777765556778888887643 1 122
Q ss_pred cCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHHH
Q 046770 349 MGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCL 409 (475)
Q Consensus 349 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~ 409 (475)
......+.+.+++.++...++...+...+. . -..+....|++.++|.+..+......
T Consensus 150 ~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~-~---i~~~~l~~l~~~~~G~~r~~~~~l~~ 206 (319)
T 2chq_A 150 QSRCAVFRFKPVPKEAMKKRLLEICEKEGV-K---ITEDGLEALIYISGGDFRKAINALQG 206 (319)
T ss_dssp HTTCEEEECCCCCHHHHHHHHHHHHHTTCC-C---BCHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred HhhCeEEEecCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 233468999999999999999877643221 1 12455677889999999866544433
No 18
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.93 E-value=8e-09 Score=98.57 Aligned_cols=172 Identities=9% Similarity=-0.020 Sum_probs=105.4
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCccccc---Cc--CeEEEEEecCCCCHHH
Q 046770 196 KVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQC---HF--DLKAWTYVSQDFDIIR 270 (475)
Q Consensus 196 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~---~F--~~~~wv~v~~~~~~~~ 270 (475)
.+.||++|+++|...|...-.. ...+.+.|+|++|+|||++++.|++...... .. -..+.+++....+...
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~----~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~ 96 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMS----SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT----TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HH
T ss_pred ccCCHHHHHHHHHHHHHHHhcC----CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHH
Confidence 4899999999999887652211 3456789999999999999999998532111 11 1356777778888899
Q ss_pred HHHHHHHHhhcCCCC-CCChHHHHHHHHHH--hCCceEEEEEECCCCCChhhHhHhhCcCC---CCCCCcEEEEecCCh-
Q 046770 271 VTKSILRSVAMGIVD-HNDLNLLQWKLKKQ--LFGKRFLLVLDDVWNENYNDWIDLSRPFQ---DGAPGSKIIITTRNA- 343 (475)
Q Consensus 271 ~l~~il~~l~~~~~~-~~~~~~l~~~l~~~--l~~kr~LlVlDdv~~~~~~~~~~l~~~l~---~~~~gs~ilvTtR~~- 343 (475)
++..|++++.+.... ......+...+... -.+++++++||+++... ..+.+...+. .......||.++...
T Consensus 97 ~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 97 LYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp HHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcc
Confidence 999999999654322 22333344334332 24668999999996543 1112222211 111122333334332
Q ss_pred --H--H----HHhcCCCceeeCCCCCHHHHHHHHhhccc
Q 046770 344 --D--A----ALIMGTVQAYPLKGLSNDDCMCLFTQHSL 374 (475)
Q Consensus 344 --~--v----~~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 374 (475)
. + ...+ ....+.+.|++.++..+++.+++.
T Consensus 175 ~~~~~L~~~v~SR~-~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 175 TIREQINIMPSLKA-HFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CCHHHHHTCHHHHT-TEEEEECCCCCHHHHHHHHHHHHH
T ss_pred cchhhcchhhhccC-CceEEEeCCCCHHHHHHHHHHHHH
Confidence 1 1 1111 225689999999999999988763
No 19
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.88 E-value=1.1e-08 Score=100.82 Aligned_cols=197 Identities=15% Similarity=0.115 Sum_probs=115.1
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKS 274 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~ 274 (475)
.+++|++..++.|..++.. . .....+.|+|++|+||||+|+.+++.......+.. ..+... .....
T Consensus 16 ~~~vg~~~~~~~L~~~l~~-~------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~---~~~~~~----~~~~~ 81 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSL-G------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGVC----DNCRE 81 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHH-T------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS---SCCSSS----HHHHH
T ss_pred hhccCcHHHHHHHHHHHHh-C------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC---CCCccc----HHHHH
Confidence 3599999999999999876 2 12246789999999999999999874321111100 000000 00111
Q ss_pred HHHHh-------hcC-CCCCCChHHHHHHHHHH-hCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCChHH
Q 046770 275 ILRSV-------AMG-IVDHNDLNLLQWKLKKQ-LFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNADA 345 (475)
Q Consensus 275 il~~l-------~~~-~~~~~~~~~l~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v 345 (475)
+.... ... .........+...+... ..+++.+|||||++..+...+..+...+.....+..+|++|....-
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 161 (373)
T 1jr3_A 82 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (373)
T ss_dssp HHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGG
T ss_pred HhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 11000 000 00112222222221111 1356789999999776666666666665544456777777765321
Q ss_pred --HHhcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHHH
Q 046770 346 --ALIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCL 409 (475)
Q Consensus 346 --~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~ 409 (475)
.........+++.+++.++...++.+.+...+. . ...+....|++.++|.|..+..+...
T Consensus 162 l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~-~---~~~~a~~~l~~~~~G~~r~~~~~l~~ 223 (373)
T 1jr3_A 162 LPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI-A---HEPRALQLLARAAEGSLRDALSLTDQ 223 (373)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-C---BCHHHHHHHHHHSSSCHHHHHHHHHH
T ss_pred CcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 122234478999999999999999876532211 1 11355677999999999988766543
No 20
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.79 E-value=1.2e-08 Score=90.06 Aligned_cols=45 Identities=24% Similarity=0.385 Sum_probs=38.2
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..++||+.+++.+.+++.. ...+.+.|+|++|+|||+||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~--------~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQR--------RTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTS--------SSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhc--------CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999999876 23356789999999999999999874
No 21
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.75 E-value=3.8e-08 Score=96.11 Aligned_cols=195 Identities=11% Similarity=0.055 Sum_probs=114.4
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcC-eEEEEEecCCCCHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFD-LKAWTYVSQDFDIIRVTK 273 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~l~ 273 (475)
.+++|++..++.|..++.. ...+.+.|+|++|+||||+|+.+++.......+. ....++.+..... ..+.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~--------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~ 107 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKS--------ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGI-SIVR 107 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTC--------TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCH-HHHT
T ss_pred HHhhCCHHHHHHHHHHHhc--------CCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccch-HHHH
Confidence 4689999999999999866 2223388999999999999999987422111111 2233333332222 2223
Q ss_pred HHHHHhhcCCC-CCCChHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCChHH--HHhcC
Q 046770 274 SILRSVAMGIV-DHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNADA--ALIMG 350 (475)
Q Consensus 274 ~il~~l~~~~~-~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v--~~~~~ 350 (475)
+.+..+..... ..... .....-.++.-+|++|++..........++..+.......++|++|....- .....
T Consensus 108 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~s 182 (353)
T 1sxj_D 108 EKVKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLAS 182 (353)
T ss_dssp THHHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH
T ss_pred HHHHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhc
Confidence 33332222111 10000 011111245579999999766555555565555443446677777765321 11111
Q ss_pred CCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHH
Q 046770 351 TVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALG 407 (475)
Q Consensus 351 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 407 (475)
....+.+.+++.++...++.+.+..... .. ..+....|++.++|.|..+..+.
T Consensus 183 R~~~i~~~~~~~~~~~~~l~~~~~~~~~-~i---~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 183 QCSKFRFKALDASNAIDRLRFISEQENV-KC---DDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp HSEEEECCCCCHHHHHHHHHHHHHTTTC-CC---CHHHHHHHHHHTSSCHHHHHHHH
T ss_pred cCceEEeCCCCHHHHHHHHHHHHHHhCC-CC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 2357899999999999999876543221 11 24567789999999998755443
No 22
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.71 E-value=1.8e-07 Score=94.09 Aligned_cols=181 Identities=20% Similarity=0.187 Sum_probs=104.2
Q ss_pred ccccccchhH---HHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHH
Q 046770 195 AKVYGRSKER---EEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRV 271 (475)
Q Consensus 195 ~~~vGR~~e~---~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~ 271 (475)
.+++|.+..+ ..|...+.. ...+.+.|+|++|+||||||+.+++.. ... ++.++....-..-
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~--------~~~~~vLL~GppGtGKTtlAr~ia~~~--~~~-----f~~l~a~~~~~~~ 90 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEA--------GHLHSMILWGPPGTGKTTLAEVIARYA--NAD-----VERISAVTSGVKE 90 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHH--------TCCCEEEEECSTTSSHHHHHHHHHHHT--TCE-----EEEEETTTCCHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHc--------CCCcEEEEECCCCCcHHHHHHHHHHHh--CCC-----eEEEEeccCCHHH
Confidence 3588888777 667777766 345678999999999999999999842 222 2222221111111
Q ss_pred HHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEE-ecCChHH---HH
Q 046770 272 TKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIII-TTRNADA---AL 347 (475)
Q Consensus 272 l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~v---~~ 347 (475)
++.++... ......+++.+|+||+++.......+.++..+..+ ...+|. ||.+... ..
T Consensus 91 ir~~~~~a----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~a 152 (447)
T 3pvs_A 91 IREAIERA----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSA 152 (447)
T ss_dssp HHHHHHHH----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHH
T ss_pred HHHHHHHH----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHH
Confidence 22222111 11112467889999999876544445555444431 234443 5555321 22
Q ss_pred hcCCCceeeCCCCCHHHHHHHHhhcccCCCCC---CCCchHHHHHHHHHHhcCCchHHHHHHHH
Q 046770 348 IMGTVQAYPLKGLSNDDCMCLFTQHSLETRDF---SMHQPLKEIGAKIVIKCNGLPLAAKALGC 408 (475)
Q Consensus 348 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~---~~~~~~~~~~~~I~~~c~G~PLai~~~~~ 408 (475)
......++.+.+++.++...++.+.+...... ....-..+....|++.++|.+-.+..+..
T Consensus 153 L~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le 216 (447)
T 3pvs_A 153 LLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLE 216 (447)
T ss_dssp HHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred HhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 33345688999999999999998775431110 11122345677788889998876654443
No 23
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.68 E-value=6.2e-08 Score=93.47 Aligned_cols=183 Identities=15% Similarity=0.097 Sum_probs=109.2
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKS 274 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~ 274 (475)
..++|++..++.+..++...... . .....+.|+|++|+|||+||+.+++.. .. ...+++++......++
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~-~--~~~~~vll~G~~GtGKT~la~~i~~~~--~~---~~~~~~~~~~~~~~~l--- 80 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKAR-K--EPLEHLLLFGPPGLGKTTLAHVIAHEL--GV---NLRVTSGPAIEKPGDL--- 80 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHH-C--SCCCCCEEECCTTCCCHHHHHHHHHHH--TC---CEEEECTTTCCSHHHH---
T ss_pred HHhhCHHHHHHHHHHHHHHHHcc-C--CCCCcEEEECCCCCCHHHHHHHHHHHh--CC---CEEEEeccccCChHHH---
Confidence 46999999988888877531100 0 122467899999999999999998732 21 1234443332222111
Q ss_pred HHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCC------------------CCCcEE
Q 046770 275 ILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDG------------------APGSKI 336 (475)
Q Consensus 275 il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~------------------~~gs~i 336 (475)
...+...+ .+..+|+|||+..........+...+... ..+..+
T Consensus 81 ------------------~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 141 (324)
T 1hqc_A 81 ------------------AAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL 141 (324)
T ss_dssp ------------------HHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEE
T ss_pred ------------------HHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEE
Confidence 11111111 34568999999776544444443322211 023567
Q ss_pred EEecCChH-HHH-hcCCC-ceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHhc
Q 046770 337 IITTRNAD-AAL-IMGTV-QAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCLLH 411 (475)
Q Consensus 337 lvTtR~~~-v~~-~~~~~-~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~ 411 (475)
|.||.... +.. ..... ..+.+.+++.++...++...+..... .. ..+....|++.|+|.|..+..+...+.
T Consensus 142 i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~-~~---~~~~~~~l~~~~~G~~r~l~~~l~~~~ 215 (324)
T 1hqc_A 142 IGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV-RI---TEEAALEIGRRSRGTMRVAKRLFRRVR 215 (324)
T ss_dssp EEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC-CC---CHHHHHHHHHHSCSCHHHHHHHHHHHT
T ss_pred EEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC-CC---CHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 77766432 110 11122 57899999999999999877643321 11 235677899999999998887766553
No 24
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.63 E-value=2e-08 Score=92.24 Aligned_cols=174 Identities=10% Similarity=0.033 Sum_probs=98.2
Q ss_pred cccccc---hhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHH
Q 046770 196 KVYGRS---KEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVT 272 (475)
Q Consensus 196 ~~vGR~---~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l 272 (475)
+++|+. ..++.+..++.. ...+.+.|+|++|+||||||+.+++.. ........|++++.....
T Consensus 29 ~~~~~~~~~~~~~~l~~~~~~--------~~~~~~ll~G~~G~GKT~la~~l~~~~--~~~~~~~~~~~~~~~~~~---- 94 (242)
T 3bos_A 29 SYYPAAGNDELIGALKSAASG--------DGVQAIYLWGPVKSGRTHLIHAACARA--NELERRSFYIPLGIHASI---- 94 (242)
T ss_dssp TSCC--CCHHHHHHHHHHHHT--------CSCSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEEGGGGGGS----
T ss_pred hccCCCCCHHHHHHHHHHHhC--------CCCCeEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEEHHHHHHH----
Confidence 466632 445555555543 233578899999999999999998743 222234566665442110
Q ss_pred HHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCChhh--HhHhhCcCCC-CCCC-cEEEEecCChH----
Q 046770 273 KSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYND--WIDLSRPFQD-GAPG-SKIIITTRNAD---- 344 (475)
Q Consensus 273 ~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~--~~~l~~~l~~-~~~g-s~ilvTtR~~~---- 344 (475)
+. . .+. .+ .++.+|||||++...... ...+...+.. ...+ .++|+||+...
T Consensus 95 ------~~----------~---~~~-~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~ 153 (242)
T 3bos_A 95 ------ST----------A---LLE-GL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAG 153 (242)
T ss_dssp ------CG----------G---GGT-TG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTT
T ss_pred ------HH----------H---HHH-hc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHH
Confidence 00 0 000 01 346799999996543222 2223332211 0112 24777776321
Q ss_pred -----HHHhcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHH
Q 046770 345 -----AALIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGC 408 (475)
Q Consensus 345 -----v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~ 408 (475)
+...+.....+.+.+++.++..+++...+..... . ...+....|++.++|.+-.+..+..
T Consensus 154 ~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~-~---~~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 154 FVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL-Q---LPEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp CCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC-C---CCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHccCCHHHHHHHHH
Confidence 1111112267899999999999999877642211 1 1245667789999999877665443
No 25
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.59 E-value=2.1e-07 Score=90.92 Aligned_cols=198 Identities=13% Similarity=0.057 Sum_probs=108.3
Q ss_pred ccccccchhHHHHHHHH-hcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCc---ccc-cCcCe-------------
Q 046770 195 AKVYGRSKEREEIVELL-LKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDS---RVQ-CHFDL------------- 256 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L-~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~---~~~-~~F~~------------- 256 (475)
.+++|.+..++.+.+++ .. +..+.+.|+|+.|+||||+++.++... ... -.++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~--------~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~ 85 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQP--------RDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLEL 85 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCT--------TCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------
T ss_pred HHhcCCHHHHHHHHHHHhhC--------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccccccee
Confidence 45889998888888877 33 222238999999999999999887621 100 00000
Q ss_pred -------EEEEEecCCC-CHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCC
Q 046770 257 -------KAWTYVSQDF-DIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQ 328 (475)
Q Consensus 257 -------~~wv~v~~~~-~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~ 328 (475)
.+.+..+... ......++++..+.....- .... .+.. +.+++-++|||++...+......+...+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~-~ls~-l~~~~~vlilDE~~~L~~~~~~~L~~~le 159 (354)
T 1sxj_E 86 NVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV----DFQD-SKDG-LAHRYKCVIINEANSLTKDAQAALRRTME 159 (354)
T ss_dssp CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHH
T ss_pred eeecccceEEecHhhcCCcchHHHHHHHHHHHHhccc----cccc-cccc-cCCCCeEEEEeCccccCHHHHHHHHHHHH
Confidence 1111111100 0001223333332211100 0000 0000 23466799999998766655666665554
Q ss_pred CCCCCcEEEEecCChH-H-HHhcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHH
Q 046770 329 DGAPGSKIIITTRNAD-A-ALIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKAL 406 (475)
Q Consensus 329 ~~~~gs~ilvTtR~~~-v-~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 406 (475)
....++.+|++|.... + .........+++.+++.++...++.+.+...+-.... .+....|++.++|.+-.+..+
T Consensus 160 ~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 160 KYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET---KDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp HSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC---SHHHHHHHHHHTTCHHHHHHH
T ss_pred hhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHHcCCCHHHHHHH
Confidence 3334677888777532 1 1222344789999999999999998765322111110 245667899999999877655
Q ss_pred HHH
Q 046770 407 GCL 409 (475)
Q Consensus 407 ~~~ 409 (475)
...
T Consensus 237 l~~ 239 (354)
T 1sxj_E 237 LES 239 (354)
T ss_dssp HTH
T ss_pred HHH
Confidence 543
No 26
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.54 E-value=1.1e-06 Score=86.39 Aligned_cols=199 Identities=14% Similarity=0.075 Sum_probs=107.9
Q ss_pred ccccccchhHHH---HHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEe----cCCCC
Q 046770 195 AKVYGRSKEREE---IVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYV----SQDFD 267 (475)
Q Consensus 195 ~~~vGR~~e~~~---l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v----~~~~~ 267 (475)
..++|++..++. +.+.+.. .. ...+.+.|+|++|+|||+||+.+++.......| +.+.. +....
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~-~~-----~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~---~~~~~~~~~~~~~~ 114 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIRE-GK-----IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF---TAIAGSEIFSLEMS 114 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHT-TC-----CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE---EEEEGGGGSCSSSC
T ss_pred hhccChHHHHHHHHHHHHHHHc-CC-----CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc---ccccchhhhhcccc
Confidence 469999988766 4555444 21 122578999999999999999998843211111 11221 12233
Q ss_pred HHHHHHHHHHHhhcC---------------------C-------CC--CCChHHHHHHHHHHh-----CCc----eEEEE
Q 046770 268 IIRVTKSILRSVAMG---------------------I-------VD--HNDLNLLQWKLKKQL-----FGK----RFLLV 308 (475)
Q Consensus 268 ~~~~l~~il~~l~~~---------------------~-------~~--~~~~~~l~~~l~~~l-----~~k----r~LlV 308 (475)
..+.+...+...... . .. ......+...+.... .++ +.+|+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~ 194 (368)
T 3uk6_A 115 KTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLF 194 (368)
T ss_dssp HHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEE
T ss_pred hhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEE
Confidence 334444443331110 0 00 000122222222221 233 35999
Q ss_pred EECCCCCChhhHhHhhCcCCCCCCCcEEEEecCC------------h-HH-HHhcCCCceeeCCCCCHHHHHHHHhhccc
Q 046770 309 LDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRN------------A-DA-ALIMGTVQAYPLKGLSNDDCMCLFTQHSL 374 (475)
Q Consensus 309 lDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~------------~-~v-~~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 374 (475)
||++..........+...+...... .++++|.. . .+ .........+.+.+++.++..+++...+.
T Consensus 195 IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~ 273 (368)
T 3uk6_A 195 IDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCE 273 (368)
T ss_dssp EESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHH
T ss_pred EhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHH
Confidence 9999877666666666666543333 34434321 0 01 11223335589999999999999997764
Q ss_pred CCCCCCCCchHHHHHHHHHHhcC-CchHHHHHHH
Q 046770 375 ETRDFSMHQPLKEIGAKIVIKCN-GLPLAAKALG 407 (475)
Q Consensus 375 ~~~~~~~~~~~~~~~~~I~~~c~-G~PLai~~~~ 407 (475)
.... . -..+....|++.+. |.|-.+..+.
T Consensus 274 ~~~~-~---~~~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 274 EEDV-E---MSEDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp HTTC-C---BCHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HcCC-C---CCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 3221 1 22456677888887 7776555433
No 27
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.53 E-value=5.7e-07 Score=90.47 Aligned_cols=183 Identities=17% Similarity=0.127 Sum_probs=106.9
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcCcccccCcC--eEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFD--LKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLF 301 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 301 (475)
...+.|+|++|+||||||+.+++. ....+. ..++++.. .+...+...+... .. ..+...+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~-----~~----~~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITSE------KFLNDLVDSMKEG-----KL----NEFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEHH------HHHHHHHHHHHTT-----CH----HHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeHH------HHHHHHHHHHHcc-----cH----HHHHHHhc
Confidence 457899999999999999999984 222221 23444432 3344455444332 11 12333444
Q ss_pred CceEEEEEECCCCCCh--hhHhHhhCcCCC-CCCCcEEEEecCCh---------HHHHhcCCCceeeCCCCCHHHHHHHH
Q 046770 302 GKRFLLVLDDVWNENY--NDWIDLSRPFQD-GAPGSKIIITTRNA---------DAALIMGTVQAYPLKGLSNDDCMCLF 369 (475)
Q Consensus 302 ~kr~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf 369 (475)
.+.-+|+|||++.... .....+...+.. ...|..||+||... .+...+.....+.+.+++.++...++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 3677999999965332 222333333321 13467888888762 22222333467899999999999999
Q ss_pred hhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHh------cCC-CChhHHHHHHhccc
Q 046770 370 TQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCLL------HGK-YDPSDWESVLNSRI 427 (475)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L------~~~-~~~~~w~~~l~~~~ 427 (475)
.+.+....- ..++ +....|++.+.|.+--+.-+...+ ... -+.+.+..++....
T Consensus 273 ~~~~~~~~~-~i~~---e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 273 RKMLEIEHG-ELPE---EVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKDFI 333 (440)
T ss_dssp HHHHHHHTC-CCCT---THHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTSTTT
T ss_pred HHHHHHcCC-CCCH---HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 877642211 1122 345668889999987655333222 122 45677777776543
No 28
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.52 E-value=7.5e-07 Score=86.40 Aligned_cols=179 Identities=15% Similarity=0.135 Sum_probs=106.0
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKS 274 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~ 274 (475)
.+++|++..++.+..++...... . .....|.|+|++|+|||+||+.+++. ....| +.+++......
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~-~--~~~~~vll~G~~GtGKT~la~~ia~~--~~~~~---~~~~~~~~~~~------ 94 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKR-N--ECLDHILFSGPAGLGKTTLANIISYE--MSANI---KTTAAPMIEKS------ 94 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHT-T--SCCCCEEEECSTTSSHHHHHHHHHHH--TTCCE---EEEEGGGCCSH------
T ss_pred HHhCChHHHHHHHHHHHHHHHhc-C--CCCCeEEEECcCCCCHHHHHHHHHHH--hCCCe---EEecchhccch------
Confidence 46999999999998888652100 0 23346889999999999999999873 22222 22332221111
Q ss_pred HHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCC------------------CCCcEE
Q 046770 275 ILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDG------------------APGSKI 336 (475)
Q Consensus 275 il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~------------------~~gs~i 336 (475)
......+.. ..+..+|+||++..........++..+... .++..+
T Consensus 95 ---------------~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T 3pfi_A 95 ---------------GDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTL 157 (338)
T ss_dssp ---------------HHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEE
T ss_pred ---------------hHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEE
Confidence 111111111 245678999999766544444444333211 113566
Q ss_pred EEecCChHH-H-HhcCC-CceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHH
Q 046770 337 IITTRNADA-A-LIMGT-VQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGC 408 (475)
Q Consensus 337 lvTtR~~~v-~-~~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~ 408 (475)
|.+|..... . ..... ...+.+.+++.++...++.+.+.... .....+....|++.+.|+|-.+..+..
T Consensus 158 i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~----~~~~~~~~~~l~~~~~G~~r~l~~~l~ 228 (338)
T 3pfi_A 158 IGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN----KTCEEKAALEIAKRSRSTPRIALRLLK 228 (338)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT----CEECHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred EEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHCcCHHHHHHHHH
Confidence 666665321 1 11122 36799999999999999987664321 112245667788899999965554443
No 29
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.48 E-value=2.7e-06 Score=82.31 Aligned_cols=170 Identities=14% Similarity=0.109 Sum_probs=103.1
Q ss_pred chhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccc--------------------cCcCeEEEE
Q 046770 201 SKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQ--------------------CHFDLKAWT 260 (475)
Q Consensus 201 ~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------------------~~F~~~~wv 260 (475)
+...+.+...+.. . .-...+.++|+.|+|||++|+.+.+...-. .|++ ..++
T Consensus 8 ~~~~~~l~~~i~~-~------~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~ 79 (334)
T 1a5t_A 8 RPDFEKLVASYQA-G------RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTL 79 (334)
T ss_dssp HHHHHHHHHHHHT-T------CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEE
T ss_pred HHHHHHHHHHHHc-C------CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEE
Confidence 3445666666655 2 223568899999999999999987632111 1122 1222
Q ss_pred EecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHh-----CCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcE
Q 046770 261 YVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQL-----FGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSK 335 (475)
Q Consensus 261 ~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 335 (475)
.... .......+.+. .+.+.+ .+++-++|+|+++..+......++..+.....++.
T Consensus 80 ~~~~------------------~~~~~~i~~ir-~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~ 140 (334)
T 1a5t_A 80 APEK------------------GKNTLGVDAVR-EVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETW 140 (334)
T ss_dssp CCCT------------------TCSSBCHHHHH-HHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEE
T ss_pred eccc------------------cCCCCCHHHHH-HHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeE
Confidence 2110 00111222222 222222 35677999999987666666667766665455677
Q ss_pred EEEecCChH--HHHhcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHH
Q 046770 336 IIITTRNAD--AALIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKAL 406 (475)
Q Consensus 336 ilvTtR~~~--v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 406 (475)
+|++|.+.. .....+....+++.+++.++..+++.+... .. .+....+++.++|.|..+..+
T Consensus 141 ~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~------~~---~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 141 FFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVT------MS---QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp EEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC------CC---HHHHHHHHHHTTTCHHHHHHT
T ss_pred EEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcC------CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 777776643 122333456899999999999999987751 11 344567899999999876544
No 30
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.43 E-value=6.7e-07 Score=91.96 Aligned_cols=196 Identities=12% Similarity=0.105 Sum_probs=106.4
Q ss_pred ccccccchhHHHHHHHHhcCCC---------CCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCC
Q 046770 195 AKVYGRSKEREEIVELLLKEDG---------TSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQD 265 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~---------~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~ 265 (475)
.+++|++..++.|.+|+..... +.......+.+.|+|++|+||||+|+.+++.. .+ ..+.++.+..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----~~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----GY-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----TC-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----CC-CEEEEeCCCc
Confidence 4699999999999999865110 00000134688999999999999999999843 12 2334444443
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHH--HhCCceEEEEEECCCCCCh---hhHhHhhCcCCCCCCCcEEEEec
Q 046770 266 FDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKK--QLFGKRFLLVLDDVWNENY---NDWIDLSRPFQDGAPGSKIIITT 340 (475)
Q Consensus 266 ~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~--~l~~kr~LlVlDdv~~~~~---~~~~~l~~~l~~~~~gs~ilvTt 340 (475)
... .++...+....... ........... ...+++.+|+||+++.... ..+..+...+.. .+..||+++
T Consensus 114 ~~~-~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~ 186 (516)
T 1sxj_A 114 RSK-TLLNAGVKNALDNM----SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILIC 186 (516)
T ss_dssp CCH-HHHHHTGGGGTTBC----CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEE
T ss_pred chH-HHHHHHHHHHhccc----cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEE
Confidence 332 22222222221110 00000000000 1235688999999965322 122333332222 233455555
Q ss_pred CCh---HHHHhcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCch-HHHHHH
Q 046770 341 RNA---DAALIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLP-LAAKAL 406 (475)
Q Consensus 341 R~~---~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P-Lai~~~ 406 (475)
... .+.........+.+.+++.++..+++...+........+ +....|++.++|.+ .++..+
T Consensus 187 ~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~----~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 187 NERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP----NVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp SCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT----THHHHHHHHTTTCHHHHHHHH
T ss_pred cCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHcCCcHHHHHHHH
Confidence 432 222222334678999999999999888765432211122 34566889999954 455544
No 31
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.43 E-value=8.4e-07 Score=85.55 Aligned_cols=184 Identities=15% Similarity=0.102 Sum_probs=106.3
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKS 274 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~ 274 (475)
.+++|.+..++.|.+++.. . ....++.+.|++|+|||++|+.+++.. . ...+.++.+. .. ...+..
T Consensus 26 ~~ivg~~~~~~~l~~~l~~-~------~~~~~~L~~G~~G~GKT~la~~la~~l--~---~~~~~i~~~~-~~-~~~i~~ 91 (324)
T 3u61_B 26 DECILPAFDKETFKSITSK-G------KIPHIILHSPSPGTGKTTVAKALCHDV--N---ADMMFVNGSD-CK-IDFVRG 91 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHT-T------CCCSEEEECSSTTSSHHHHHHHHHHHT--T---EEEEEEETTT-CC-HHHHHT
T ss_pred HHHhCcHHHHHHHHHHHHc-C------CCCeEEEeeCcCCCCHHHHHHHHHHHh--C---CCEEEEcccc-cC-HHHHHH
Confidence 4689999999999999875 2 223577888999999999999998742 1 1223344333 22 222233
Q ss_pred HHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCC-hhhHhHhhCcCCCCCCCcEEEEecCChHHH--HhcCC
Q 046770 275 ILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNEN-YNDWIDLSRPFQDGAPGSKIIITTRNADAA--LIMGT 351 (475)
Q Consensus 275 il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~--~~~~~ 351 (475)
.+..+..... ..+++-+|+|||++... ......+...+.....++.+|+||....-. .....
T Consensus 92 ~~~~~~~~~~---------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR 156 (324)
T 3u61_B 92 PLTNFASAAS---------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR 156 (324)
T ss_dssp HHHHHHHBCC---------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH
T ss_pred HHHHHHhhcc---------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh
Confidence 2222211110 12467899999997665 444555554444333467888888764310 00112
Q ss_pred CceeeCCCCCHHHHHHH-------HhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHh
Q 046770 352 VQAYPLKGLSNDDCMCL-------FTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGCLL 410 (475)
Q Consensus 352 ~~~~~l~~L~~~~~~~l-------f~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L 410 (475)
...+.+.+++.++-.++ +...+..... ...+ .+....|++.++|.+-.+......+
T Consensus 157 ~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~-~~~~--~~~~~~l~~~~~gd~R~a~~~L~~~ 219 (324)
T 3u61_B 157 CRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGI-AIAD--MKVVAALVKKNFPDFRKTIGELDSY 219 (324)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTC-CBSC--HHHHHHHHHHTCSCTTHHHHHHHHH
T ss_pred CcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCC-CCCc--HHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 25789999998874333 2222211111 1111 2566778899999877555444443
No 32
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.41 E-value=1.4e-06 Score=82.36 Aligned_cols=186 Identities=16% Similarity=0.098 Sum_probs=99.7
Q ss_pred cccccccchhHHHHHHHHhcCCCC-------CCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCC
Q 046770 194 EAKVYGRSKEREEIVELLLKEDGT-------SHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDF 266 (475)
Q Consensus 194 ~~~~vGR~~e~~~l~~~L~~~~~~-------~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~ 266 (475)
-.+++|.+..++.|.+.+...-.. +. ...+.+.|+|++|+|||+||+.+++.. ... .+.+..+.-.
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~ll~G~~GtGKT~la~~la~~~--~~~---~~~v~~~~~~ 88 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGI--EPPKGILLYGPPGTGKTLLAKAVATET--NAT---FIRVVGSELV 88 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCC--CCCSEEEEESSSSSSHHHHHHHHHHHT--TCE---EEEEEGGGGC
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCC--CCCCeEEEECCCCCcHHHHHHHHHHHh--CCC---EEEEehHHHH
Confidence 346899999999998877431000 00 123468899999999999999998742 221 1222222211
Q ss_pred CHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCC-----------Ch---hhHhHhhCcCC--CC
Q 046770 267 DIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNE-----------NY---NDWIDLSRPFQ--DG 330 (475)
Q Consensus 267 ~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~-----------~~---~~~~~l~~~l~--~~ 330 (475)
. .. .......+...+......++.+|+|||+... .. .....+...+. ..
T Consensus 89 ~--------------~~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 153 (285)
T 3h4m_A 89 K--------------KF-IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA 153 (285)
T ss_dssp C--------------CS-TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS
T ss_pred H--------------hc-cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC
Confidence 0 00 0000111222222333456789999999431 11 11222222211 12
Q ss_pred CCCcEEEEecCChHHHH--hcC---CCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCC-chHHHH
Q 046770 331 APGSKIIITTRNADAAL--IMG---TVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNG-LPLAAK 404 (475)
Q Consensus 331 ~~gs~ilvTtR~~~v~~--~~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G-~PLai~ 404 (475)
..+..||.||....... ... -...+.+.+.+.++..+++...+..... ..... ...|+..+.| .|-.+.
T Consensus 154 ~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~----~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 154 RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDVN----LEEIAKMTEGCVGAELK 228 (285)
T ss_dssp SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHHCTTCCHHHHH
T ss_pred CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcCC----HHHHHHHcCCCCHHHHH
Confidence 34667888887642211 111 1246889999999999999877643221 11222 3457777877 454444
Q ss_pred HH
Q 046770 405 AL 406 (475)
Q Consensus 405 ~~ 406 (475)
.+
T Consensus 229 ~l 230 (285)
T 3h4m_A 229 AI 230 (285)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 33
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.40 E-value=9.2e-07 Score=84.57 Aligned_cols=161 Identities=12% Similarity=0.028 Sum_probs=87.7
Q ss_pred cccccchhHHHHHHHHhcCC---------CCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCC
Q 046770 196 KVYGRSKEREEIVELLLKED---------GTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDF 266 (475)
Q Consensus 196 ~~vGR~~e~~~l~~~L~~~~---------~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~ 266 (475)
.++|.+..++.|.+++.... -... .....+.|+|++|+|||+||+.+++............++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~--~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHE--TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSS--CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG-
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCC--CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH-
Confidence 47888887777776553200 0000 23456889999999999999988764322221111122333210
Q ss_pred CHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCC---------ChhhHhHhhCcCCCCCCCcEEE
Q 046770 267 DIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNE---------NYNDWIDLSRPFQDGAPGSKII 337 (475)
Q Consensus 267 ~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~il 337 (475)
.+.... .......+...+... +..+|+||+++.. .......+...+.....+..+|
T Consensus 109 -----------~l~~~~-~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i 173 (309)
T 3syl_A 109 -----------DLVGQY-IGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVI 173 (309)
T ss_dssp -----------GTCCSS-TTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEE
T ss_pred -----------Hhhhhc-ccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEE
Confidence 000000 011111222222222 3459999999632 3344455555554444567888
Q ss_pred EecCChHHHHhc--C------CCceeeCCCCCHHHHHHHHhhccc
Q 046770 338 ITTRNADAALIM--G------TVQAYPLKGLSNDDCMCLFTQHSL 374 (475)
Q Consensus 338 vTtR~~~v~~~~--~------~~~~~~l~~L~~~~~~~lf~~~~~ 374 (475)
+||......... . ....+.+.+++.++...++...+.
T Consensus 174 ~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 174 LAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp EEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred EeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 888654321110 1 126789999999999999987654
No 34
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.36 E-value=2.3e-06 Score=83.08 Aligned_cols=186 Identities=11% Similarity=0.096 Sum_probs=106.7
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcC-eEEEEEecCCCCHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFD-LKAWTYVSQDFDIIRVTK 273 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~l~ 273 (475)
..++|.+..++.|..++.. ++.+.+.++|++|+||||+|+.+++... ...+. ....++.+....... ++
T Consensus 25 ~~~~g~~~~~~~L~~~i~~--------g~~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~~~-ir 94 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDE--------GKLPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRGIDV-VR 94 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHT--------TCCCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCSHHH-HH
T ss_pred HHhcCcHHHHHHHHHHHhc--------CCCceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCcccccHHH-HH
Confidence 3578888888888888866 3333488999999999999999987421 11111 112222222222211 11
Q ss_pred HHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCChH-H-HHhcCC
Q 046770 274 SILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNAD-A-ALIMGT 351 (475)
Q Consensus 274 ~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v-~~~~~~ 351 (475)
..+..+..... .+.+.+-++|+|+++.........++..+......+.+|++|.... + ......
T Consensus 95 ~~i~~~~~~~~--------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR 160 (340)
T 1sxj_C 95 NQIKDFASTRQ--------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQ 160 (340)
T ss_dssp THHHHHHHBCC--------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred HHHHHHHhhcc--------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhh
Confidence 22222111000 0123467899999976655555555555443334567777776532 1 112223
Q ss_pred CceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHH
Q 046770 352 VQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGC 408 (475)
Q Consensus 352 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~ 408 (475)
...+.+.+++.++..+.+.+.+-...- .. ..+..+.|++.++|.+--+..+..
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~~~~~~~-~i---~~~~~~~i~~~s~G~~r~~~~~l~ 213 (340)
T 1sxj_C 161 CTRFRFQPLPQEAIERRIANVLVHEKL-KL---SPNAEKALIELSNGDMRRVLNVLQ 213 (340)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHTTTC-CB---CHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred ceeEeccCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 457889999999998888766532211 11 134567789999998885543333
No 35
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.35 E-value=1e-05 Score=78.92 Aligned_cols=187 Identities=14% Similarity=0.051 Sum_probs=99.8
Q ss_pred ccccccchhHHHHHHHHhcC---C---CCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCH
Q 046770 195 AKVYGRSKEREEIVELLLKE---D---GTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDI 268 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~---~---~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~ 268 (475)
.+++|.+..++.|.+.+... . .... ...+-|.|+|++|+|||+||+.+++.. ...| +.++.+
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~--~~~~~iLL~GppGtGKT~la~ala~~~--~~~~---~~v~~~----- 118 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNR--KPTSGILLYGPPGTGKSYLAKAVATEA--NSTF---FSVSSS----- 118 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSC--CCCCCEEEECSTTSCHHHHHHHHHHHH--TCEE---EEEEHH-----
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCC--CCCceEEEECCCCCcHHHHHHHHHHHh--CCCE---EEeeHH-----
Confidence 46899999999888876310 0 0000 223457899999999999999999843 2222 222221
Q ss_pred HHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCChh-----------hHhHhhCcC---CCCCCCc
Q 046770 269 IRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYN-----------DWIDLSRPF---QDGAPGS 334 (475)
Q Consensus 269 ~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~-----------~~~~l~~~l---~~~~~gs 334 (475)
++. ... .......+...+...-..++.+|+||++...... ....++..+ .....+.
T Consensus 119 -~l~--------~~~-~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 188 (355)
T 2qp9_X 119 -DLV--------SKW-MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 188 (355)
T ss_dssp -HHH--------SCC----CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCE
T ss_pred -HHh--------hhh-cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCe
Confidence 111 110 1111122222222223457889999999642210 012222222 1223456
Q ss_pred EEEEecCChHH---HHhcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCc-hHHHHHHH
Q 046770 335 KIIITTRNADA---ALIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGL-PLAAKALG 407 (475)
Q Consensus 335 ~ilvTtR~~~v---~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~-PLai~~~~ 407 (475)
.||.||..... +..-.-...+.+...+.++-.+++..++..... ... ......|++.+.|. +-.|..+.
T Consensus 189 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~-~~~---~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 189 LVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPS-VLT---KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCB-CCC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCC-CCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 67777765421 111123356788889999999999877643221 111 33456788999984 44454443
No 36
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.34 E-value=8.9e-06 Score=76.21 Aligned_cols=195 Identities=11% Similarity=0.041 Sum_probs=100.1
Q ss_pred cccccchhHHHHHH-------HHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCH
Q 046770 196 KVYGRSKEREEIVE-------LLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDI 268 (475)
Q Consensus 196 ~~vGR~~e~~~l~~-------~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~ 268 (475)
.++|....++++.. .+..... .....+.|+|++|+|||+||+.+++. ... .. +.++.+...
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~-----~~~~~vLl~G~~GtGKT~la~~ia~~--~~~--~~-~~i~~~~~~-- 101 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDR-----TPLVSVLLEGPPHSGKTALAAKIAEE--SNF--PF-IKICSPDKM-- 101 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSS-----CSEEEEEEECSTTSSHHHHHHHHHHH--HTC--SE-EEEECGGGC--
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCC-----CCCeEEEEECCCCCcHHHHHHHHHHH--hCC--CE-EEEeCHHHh--
Confidence 46676666555555 3322011 44578899999999999999999884 221 21 222222110
Q ss_pred HHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCC----------ChhhHhHhhCcCC---CCCCCcE
Q 046770 269 IRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNE----------NYNDWIDLSRPFQ---DGAPGSK 335 (475)
Q Consensus 269 ~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~----------~~~~~~~l~~~l~---~~~~gs~ 335 (475)
... ........+...+......+..+|+|||+... .......+...+. .......
T Consensus 102 -----------~g~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ 169 (272)
T 1d2n_A 102 -----------IGF-SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLL 169 (272)
T ss_dssp -----------TTC-CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEE
T ss_pred -----------cCC-chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEE
Confidence 000 00000011222333344567889999998431 1111222322222 1233455
Q ss_pred EEEecCChHHHHh---cCC-CceeeCCCCCH-HHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCC------chHHHH
Q 046770 336 IIITTRNADAALI---MGT-VQAYPLKGLSN-DDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNG------LPLAAK 404 (475)
Q Consensus 336 ilvTtR~~~v~~~---~~~-~~~~~l~~L~~-~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G------~PLai~ 404 (475)
||.||........ .+. ...+.+.+++. ++...++.+.. ... .+....|++.+.| ..-++.
T Consensus 170 ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~------~~~---~~~~~~l~~~~~g~~~~g~ir~l~~ 240 (272)
T 1d2n_A 170 IIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG------NFK---DKERTTIAQQVKGKKVWIGIKKLLM 240 (272)
T ss_dssp EEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT------CSC---HHHHHHHHHHHTTSEEEECHHHHHH
T ss_pred EEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC------CCC---HHHHHHHHHHhcCCCccccHHHHHH
Confidence 7778877654332 122 35688999988 77777766532 111 3446678888877 444444
Q ss_pred HHHHHhcCCCChhHHHHHHh
Q 046770 405 ALGCLLHGKYDPSDWESVLN 424 (475)
Q Consensus 405 ~~~~~L~~~~~~~~w~~~l~ 424 (475)
++-... .......+..+++
T Consensus 241 ~l~~a~-~~~~~~~~~~~~~ 259 (272)
T 1d2n_A 241 LIEMSL-QMDPEYRVRKFLA 259 (272)
T ss_dssp HHHHHT-TSCGGGHHHHHHH
T ss_pred HHHHHh-hhchHHHHHHHHH
Confidence 333332 2223445555554
No 37
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.31 E-value=6.6e-07 Score=78.36 Aligned_cols=45 Identities=22% Similarity=0.337 Sum_probs=37.9
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..++||+.+++.+.+++.. ...+.+.|+|++|+|||+||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~--------~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSR--------RTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTS--------SSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhC--------CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999999866 22346789999999999999999874
No 38
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.29 E-value=2.6e-05 Score=74.98 Aligned_cols=192 Identities=13% Similarity=0.035 Sum_probs=101.5
Q ss_pred ccccccchhHHHHHHHHhcC---CCC-CCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHH
Q 046770 195 AKVYGRSKEREEIVELLLKE---DGT-SHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIR 270 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~---~~~-~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 270 (475)
.+++|.+..++.|.+.+... ..- .......+-+.|+|++|+|||+||+.+++... .. ..+.++.+.-.+
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~---~~~~i~~~~l~~--- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NS---TFFSISSSDLVS--- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SC---EEEEEECCSSCC---
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CC---cEEEEEhHHHHh---
Confidence 46889888888887765310 000 00002346788999999999999999998421 11 112233332111
Q ss_pred HHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCC-------hhh----HhHhhCcC---CCCCCCcEE
Q 046770 271 VTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNEN-------YND----WIDLSRPF---QDGAPGSKI 336 (475)
Q Consensus 271 ~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~-------~~~----~~~l~~~l---~~~~~gs~i 336 (475)
. ........+...+...-..++.+|+||++.... ... ...++..+ .....+..|
T Consensus 85 -----------~-~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~v 152 (322)
T 1xwi_A 85 -----------K-WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 152 (322)
T ss_dssp -----------S-SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEE
T ss_pred -----------h-hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEE
Confidence 0 011122222222222234567899999995320 001 11222221 112345566
Q ss_pred EEecCChHH---HHhcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCc-hHHHHHHHHH
Q 046770 337 IITTRNADA---ALIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGL-PLAAKALGCL 409 (475)
Q Consensus 337 lvTtR~~~v---~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~-PLai~~~~~~ 409 (475)
|.||..+.. +..-.-...+.+...+.++-.+++..+...... .. .......|++.+.|. +-.|..+...
T Consensus 153 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~-~l---~~~~l~~la~~t~G~sgadl~~l~~~ 225 (322)
T 1xwi_A 153 LGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQN-SL---TEADFRELGRKTDGYSGADISIIVRD 225 (322)
T ss_dssp EEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCB-CC---CHHHHHHHHHTCTTCCHHHHHHHHHH
T ss_pred EEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCC-CC---CHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 667765321 111123356788888999999999876533221 11 134556789999987 4445555443
No 39
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.28 E-value=2e-05 Score=73.18 Aligned_cols=191 Identities=13% Similarity=0.066 Sum_probs=98.2
Q ss_pred ccccccchhHHHHHHHH---hcCCCCC-CCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHH
Q 046770 195 AKVYGRSKEREEIVELL---LKEDGTS-HNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIR 270 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L---~~~~~~~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 270 (475)
.+++|.+..++.|.+++ .....-. -.....+.+.|+|++|+|||+||+.+++.. ... .+.++.+.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~--~~~---~~~~~~~~~~~~-- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA--QVP---FLAMAGAEFVEV-- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH--TCC---EEEEETTTTSSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh--CCC---EEEechHHHHhh--
Confidence 35888887777665544 2211000 000223457899999999999999998832 222 233333332110
Q ss_pred HHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCC------------h---hhHhHhhCcCCC--CCCC
Q 046770 271 VTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNEN------------Y---NDWIDLSRPFQD--GAPG 333 (475)
Q Consensus 271 ~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~------------~---~~~~~l~~~l~~--~~~g 333 (475)
........+...+.......+.+|+|||++... . .....++..+.. ...+
T Consensus 79 -------------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 145 (262)
T 2qz4_A 79 -------------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDH 145 (262)
T ss_dssp -------------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCC
T ss_pred -------------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCC
Confidence 000011122222333333457899999996531 0 112223222211 2235
Q ss_pred cEEEEecCChHHH--HhcC---CCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchH-HHHHHH
Q 046770 334 SKIIITTRNADAA--LIMG---TVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPL-AAKALG 407 (475)
Q Consensus 334 s~ilvTtR~~~v~--~~~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL-ai~~~~ 407 (475)
..||.||...... .... -...+.+...+.++-.+++...+..... ..........+++.+.|.+- .+..+.
T Consensus 146 ~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~---~~~~~~~~~~l~~~~~g~~~~~l~~l~ 222 (262)
T 2qz4_A 146 VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL---TQSSTFYSQRLAELTPGFSGADIANIC 222 (262)
T ss_dssp EEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC---CBTHHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC---CcchhhHHHHHHHHCCCCCHHHHHHHH
Confidence 6777777664321 1111 2256788999999999998876533221 11222234678888888754 555444
Q ss_pred H
Q 046770 408 C 408 (475)
Q Consensus 408 ~ 408 (475)
.
T Consensus 223 ~ 223 (262)
T 2qz4_A 223 N 223 (262)
T ss_dssp H
T ss_pred H
Confidence 3
No 40
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.25 E-value=1.4e-06 Score=73.52 Aligned_cols=115 Identities=16% Similarity=0.034 Sum_probs=68.8
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHH
Q 046770 196 KVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSI 275 (475)
Q Consensus 196 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~i 275 (475)
.++|+...+.++.+.+..... .. .-|.|+|++|+|||++|+.+++..... ....+ ++++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~-----~~-~~vll~G~~GtGKt~lA~~i~~~~~~~-~~~~v--~~~~~~~~~------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE-----TD-IAVWLYGAPGTGRMTGARYLHQFGRNA-QGEFV--YRELTPDNA------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT-----CC-SCEEEESSTTSSHHHHHHHHHHSSTTT-TSCCE--EEECCTTTS-------
T ss_pred CceeCCHHHHHHHHHHHHHhC-----CC-CCEEEECCCCCCHHHHHHHHHHhCCcc-CCCEE--EECCCCCcc-------
Confidence 578999999999888754221 11 246899999999999999998753211 11222 555443221
Q ss_pred HHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCCh
Q 046770 276 LRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNA 343 (475)
Q Consensus 276 l~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 343 (475)
.... ..+... ..-.|+||++..........+...+.......++|.||...
T Consensus 66 -----------~~~~---~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 -----------PQLN---DFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp -----------SCHH---HHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred -----------hhhh---cHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 1111 111111 22478999998776655566665554444466788887753
No 41
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.24 E-value=2.1e-05 Score=75.57 Aligned_cols=186 Identities=14% Similarity=0.041 Sum_probs=101.7
Q ss_pred ccccccchhHHHHHHHHhcC---C---CCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCH
Q 046770 195 AKVYGRSKEREEIVELLLKE---D---GTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDI 268 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~---~---~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~ 268 (475)
.+++|.+..++.|.+++.-. . .... ...+-+.|+|++|+|||+||+.+++. ....| +.++.+
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~--~~~~~vLl~GppGtGKT~la~aia~~--~~~~~---~~v~~~----- 85 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNR--KPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSS----- 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTC--CCCCEEEEECSSSSCHHHHHHHHHHH--HTCEE---EEEEHH-----
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCC--CCCCeEEEECCCCCcHHHHHHHHHHH--HCCCE---EEEchH-----
Confidence 46899999999988877210 0 0111 23457899999999999999999884 22222 222221
Q ss_pred HHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCCh-----------hhHhHhhCcC---CCCCCCc
Q 046770 269 IRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENY-----------NDWIDLSRPF---QDGAPGS 334 (475)
Q Consensus 269 ~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l---~~~~~gs 334 (475)
++ ..... ......+...+...-..++.+|+||++..... .....++..+ .....+.
T Consensus 86 -~l----~~~~~-----g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 155 (322)
T 3eie_A 86 -DL----VSKWM-----GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 155 (322)
T ss_dssp -HH----HTTTG-----GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCE
T ss_pred -HH----hhccc-----chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCce
Confidence 11 11000 00111112222222235678999999953211 0122232222 1233456
Q ss_pred EEEEecCChHH-----HHhcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCc-hHHHHHHHH
Q 046770 335 KIIITTRNADA-----ALIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGL-PLAAKALGC 408 (475)
Q Consensus 335 ~ilvTtR~~~v-----~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~-PLai~~~~~ 408 (475)
.||.||..... .. .-...+.+...+.++-.+++..++..... ... ......|++.+.|. +-.|..+..
T Consensus 156 ~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~---~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 156 LVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPC-VLT---KEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp EEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCC-CCC---HHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCC-CCC---HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 67777776322 12 12356778889999999999887643221 111 23456788899884 545554443
No 42
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.22 E-value=5.6e-06 Score=83.94 Aligned_cols=149 Identities=17% Similarity=0.120 Sum_probs=80.1
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCccc---ccCcCeEEEEEecCCCCHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRV---QCHFDLKAWTYVSQDFDIIRV 271 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~---~~~F~~~~wv~v~~~~~~~~~ 271 (475)
..++||+.+++.+...|.. . ...-+.|+|++|+|||+||+.+++.... .......-++.+.-.
T Consensus 180 d~iiGr~~~i~~l~~~l~r-~-------~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~------ 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSR-R-------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG------ 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHC-S-------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------
T ss_pred CCccCcHHHHHHHHHHHhc-c-------CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC------
Confidence 3599999999999999876 2 2234679999999999999999873210 000111111111111
Q ss_pred HHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCChHHHH----
Q 046770 272 TKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNADAAL---- 347 (475)
Q Consensus 272 l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~---- 347 (475)
....+. ...... ..+...-..++.+|++|. .......+...+.. ...++|.+|.......
T Consensus 246 -----~~~~g~--~e~~~~---~~~~~~~~~~~~iLfiD~----~~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~~ 309 (468)
T 3pxg_A 246 -----TKYRGE--FEDRLK---KVMDEIRQAGNIILFIDA----AIDASNILKPSLAR--GELQCIGATTLDEYRKYIEK 309 (468)
T ss_dssp --------------CTTHH---HHHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHTT
T ss_pred -----ccccch--HHHHHH---HHHHHHHhcCCeEEEEeC----chhHHHHHHHhhcC--CCEEEEecCCHHHHHHHhhc
Confidence 000000 011222 223333345678999991 11222334444432 2456666666544211
Q ss_pred ---hcCCCceeeCCCCCHHHHHHHHhhcc
Q 046770 348 ---IMGTVQAYPLKGLSNDDCMCLFTQHS 373 (475)
Q Consensus 348 ---~~~~~~~~~l~~L~~~~~~~lf~~~~ 373 (475)
.......+.+.+.+.++...++....
T Consensus 310 ~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred CHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 11233579999999999999998654
No 43
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.21 E-value=1.5e-05 Score=76.71 Aligned_cols=155 Identities=16% Similarity=0.148 Sum_probs=86.6
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCc
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGK 303 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 303 (475)
...+.|+|++|+||||||+.+++..... .+ ..++++. ..+...+...+... .... +...+ .+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~-~~-~~~~i~~------~~~~~~~~~~~~~~-----~~~~----~~~~~-~~ 98 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR-GY-RVIYSSA------DDFAQAMVEHLKKG-----TINE----FRNMY-KS 98 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT-TC-CEEEEEH------HHHHHHHHHHHHHT-----CHHH----HHHHH-HT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC-CC-EEEEEEH------HHHHHHHHHHHHcC-----cHHH----HHHHh-cC
Confidence 3568899999999999999998843211 11 2344443 23334444443221 1112 12222 23
Q ss_pred eEEEEEECCCCCCh--hhHhHhhCcCCC-CCCCcEEEEecCCh---------HHHHhcCCCceeeCCCCCHHHHHHHHhh
Q 046770 304 RFLLVLDDVWNENY--NDWIDLSRPFQD-GAPGSKIIITTRNA---------DAALIMGTVQAYPLKGLSNDDCMCLFTQ 371 (475)
Q Consensus 304 r~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 371 (475)
..+|+|||+..... .....+...+.. ...+..||+||... .+...+.....+.+.+ +.++...++..
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~ 177 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKE 177 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHH
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHH
Confidence 56999999965432 122233333221 12356788877642 1222222335689999 99999999988
Q ss_pred cccCCCCCCCCchHHHHHHHHHHhcCCchHH
Q 046770 372 HSLETRDFSMHQPLKEIGAKIVIKCNGLPLA 402 (475)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLa 402 (475)
.+..... ..+ .+....|++.+ |..-.
T Consensus 178 ~~~~~~~-~l~---~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 178 KLKEFNL-ELR---KEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHTTC-CCC---HHHHHHHHHHC-SSHHH
T ss_pred HHHhcCC-CCC---HHHHHHHHHhC-CCHHH
Confidence 7643221 112 35566788888 77653
No 44
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.19 E-value=2.4e-05 Score=76.43 Aligned_cols=191 Identities=9% Similarity=-0.013 Sum_probs=101.2
Q ss_pred ccccccchhHHHHHHHHhcC---CCC-CCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHH
Q 046770 195 AKVYGRSKEREEIVELLLKE---DGT-SHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIR 270 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~---~~~-~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 270 (475)
.+++|.+..++.|.+.+... ... .......+.+.|+|++|+|||+||+.+++.. ... .+.++++.-...
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~--~~~---~~~i~~~~l~~~-- 156 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS--GAT---FFSISASSLTSK-- 156 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT--TCE---EEEEEGGGGCCS--
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc--CCe---EEEEehHHhhcc--
Confidence 46899999999888876420 000 0000234578899999999999999998732 211 233444322110
Q ss_pred HHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCC-----------hhhHhHhhCcCC----CCCCCcE
Q 046770 271 VTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNEN-----------YNDWIDLSRPFQ----DGAPGSK 335 (475)
Q Consensus 271 ~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~----~~~~gs~ 335 (475)
. .......+...+...-..++.+|+||++.... ......++..+. ....+..
T Consensus 157 ------------~-~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~ 223 (357)
T 3d8b_A 157 ------------W-VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRIL 223 (357)
T ss_dssp ------------S-TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEE
T ss_pred ------------c-cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEE
Confidence 0 00000111111222223567899999983210 011222322222 1123456
Q ss_pred EEEecCChHH---HHhcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCC-chHHHHHHHHH
Q 046770 336 IIITTRNADA---ALIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNG-LPLAAKALGCL 409 (475)
Q Consensus 336 ilvTtR~~~v---~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G-~PLai~~~~~~ 409 (475)
||.||..... +..-.-...+.+...+.++..+++...+..... .. ..+....|++.+.| .+-.|..+...
T Consensus 224 vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~-~l---~~~~l~~la~~t~G~s~~dl~~l~~~ 297 (357)
T 3d8b_A 224 VVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQC-CL---SEEEIEQIVQQSDAFSGADMTQLCRE 297 (357)
T ss_dssp EEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCB-CC---CHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred EEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCC-Cc---cHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 6667765321 111122246788888999988888776533211 11 13456778899998 55566655443
No 45
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.17 E-value=4.5e-05 Score=76.67 Aligned_cols=191 Identities=13% Similarity=0.064 Sum_probs=101.6
Q ss_pred ccccccchhHHHHHHHHhcC---CCC-CCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHH
Q 046770 195 AKVYGRSKEREEIVELLLKE---DGT-SHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIR 270 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~---~~~-~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 270 (475)
.+++|.+..++.|.+.+... ..- .......+.+.|+|++|+|||+||+.+++.. ....++.++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~------~~~~~~~v~~~~---- 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA------NNSTFFSISSSD---- 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC------CSSEEEEECCC-----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc------CCCCEEEEeHHH----
Confidence 46899999888888876310 000 0000234678899999999999999999842 111233333221
Q ss_pred HHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCCh-----------hhHhHhhCcCCC---CCCCcEE
Q 046770 271 VTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENY-----------NDWIDLSRPFQD---GAPGSKI 336 (475)
Q Consensus 271 ~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~~---~~~gs~i 336 (475)
+. ....+. .......+. ...-..++.+|+||++..... .....++..+.. ...+..|
T Consensus 204 l~----~~~~g~--~~~~~~~~f---~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~v 274 (444)
T 2zan_A 204 LV----SKWLGE--SEKLVKNLF---QLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 274 (444)
T ss_dssp --------------CCCTHHHHH---HHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEE
T ss_pred HH----hhhcch--HHHHHHHHH---HHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEE
Confidence 11 111111 112222222 222235678999999964310 112334444432 2345677
Q ss_pred EEecCChHHH--Hhc-CCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCc-hHHHHHHHH
Q 046770 337 IITTRNADAA--LIM-GTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGL-PLAAKALGC 408 (475)
Q Consensus 337 lvTtR~~~v~--~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~-PLai~~~~~ 408 (475)
|.||..+... ... .....+.+...+.++...+|..++..... .. .......|++.+.|. +-.|..+..
T Consensus 275 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~-~l---~~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 275 LGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN-SL---TEADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp EEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE-EC---CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC-CC---CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 7777664221 111 22246778888888888888877633211 11 124456788899984 444544443
No 46
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.15 E-value=5.2e-05 Score=71.85 Aligned_cols=185 Identities=11% Similarity=0.024 Sum_probs=98.7
Q ss_pred ccccccchhHHHHHHHHhcCC------CCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCH
Q 046770 195 AKVYGRSKEREEIVELLLKED------GTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDI 268 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~------~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~ 268 (475)
.+++|.+..++.|.+++.... .... ...+.+.|+|++|+||||||+.+++.. ... .+.++++.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~--~~~~~vll~Gp~GtGKT~la~~la~~~--~~~---~~~i~~~~l~~- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLR--APAKGLLLFGPPGNGKTLLARAVATEC--SAT---FLNISAASLTS- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG--CCCSEEEEESSSSSCHHHHHHHHHHHT--TCE---EEEEESTTTSS-
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCC--CCCCeEEEECcCCCCHHHHHHHHHHHh--CCC---eEEeeHHHHhh-
Confidence 468999999999888763200 0000 123578899999999999999998732 211 22333332111
Q ss_pred HHHHHHHHHHhhcCCCCCCChHHHH-HHHHHHhCCceEEEEEECCCCCC-----------hhhHhHhh---CcCCCC--C
Q 046770 269 IRVTKSILRSVAMGIVDHNDLNLLQ-WKLKKQLFGKRFLLVLDDVWNEN-----------YNDWIDLS---RPFQDG--A 331 (475)
Q Consensus 269 ~~~l~~il~~l~~~~~~~~~~~~l~-~~l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~l~---~~l~~~--~ 331 (475)
. ......... ..+......++.+|+||++.... ......++ ..+... .
T Consensus 93 -------------~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 157 (297)
T 3b9p_A 93 -------------K--YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDG 157 (297)
T ss_dssp -------------S--SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-----
T ss_pred -------------c--ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCC
Confidence 0 001112222 22222223567899999994321 01111122 112211 2
Q ss_pred CCcEEEEecCChH-----HHHhcCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchH-HHHH
Q 046770 332 PGSKIIITTRNAD-----AALIMGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPL-AAKA 405 (475)
Q Consensus 332 ~gs~ilvTtR~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL-ai~~ 405 (475)
.+..||.||.... +... -...+.+...+.++...++...+..... .. .......|++.+.|.+- .+..
T Consensus 158 ~~v~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~---~~~~~~~la~~~~g~~~~~l~~ 231 (297)
T 3b9p_A 158 DRIVVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGS-PL---DTEALRRLAKITDGYSGSDLTA 231 (297)
T ss_dssp -CEEEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSC-CS---CHHHHHHHHHHTTTCCHHHHHH
T ss_pred CcEEEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCC-CC---CHHHHHHHHHHcCCCCHHHHHH
Confidence 3456777777642 2222 2255777777888888887765432211 11 13456678899999876 5544
Q ss_pred HHH
Q 046770 406 LGC 408 (475)
Q Consensus 406 ~~~ 408 (475)
+..
T Consensus 232 l~~ 234 (297)
T 3b9p_A 232 LAK 234 (297)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 47
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.13 E-value=1.8e-06 Score=94.22 Aligned_cols=155 Identities=12% Similarity=0.083 Sum_probs=80.3
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCccc---ccCc-C-eEEEEEecCCCCHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRV---QCHF-D-LKAWTYVSQDFDII 269 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~---~~~F-~-~~~wv~v~~~~~~~ 269 (475)
..++||+.++..+++.|.. . ..+.+.|+|++|+|||+||+.+++.... .... . ..++++++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~-~-------~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~-- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLR-R-------TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA-- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHC-S-------SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------
T ss_pred cccCCcHHHHHHHHHHHhc-C-------CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc--
Confidence 3589999999999999876 2 2234689999999999999999874211 0011 1 223333222100
Q ss_pred HHHHHHHHHhhcCCCCCCChHHHHHHHHHHhC-CceEEEEEECCCCCChh-----hHh---HhhCcCCCCCCCcEEEEec
Q 046770 270 RVTKSILRSVAMGIVDHNDLNLLQWKLKKQLF-GKRFLLVLDDVWNENYN-----DWI---DLSRPFQDGAPGSKIIITT 340 (475)
Q Consensus 270 ~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~-~kr~LlVlDdv~~~~~~-----~~~---~l~~~l~~~~~gs~ilvTt 340 (475)
...........+...+...-. +++.+|+||+++..... .++ .+...+. ..+..+|.+|
T Consensus 240 -----------g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~I~at 306 (854)
T 1qvr_A 240 -----------GAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLIGAT 306 (854)
T ss_dssp -----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCCEEEEE
T ss_pred -----------cCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEEEEec
Confidence 000001111122222333223 46789999999653200 011 1222221 1234566666
Q ss_pred CChHHHH------hcCCCceeeCCCCCHHHHHHHHhhc
Q 046770 341 RNADAAL------IMGTVQAYPLKGLSNDDCMCLFTQH 372 (475)
Q Consensus 341 R~~~v~~------~~~~~~~~~l~~L~~~~~~~lf~~~ 372 (475)
....... .......+.+.+++.++..+++...
T Consensus 307 ~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 307 TLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp CHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred CchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 5443311 1123356889999999999988743
No 48
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.13 E-value=4.1e-06 Score=73.22 Aligned_cols=121 Identities=19% Similarity=0.138 Sum_probs=63.6
Q ss_pred cchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHh
Q 046770 200 RSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSV 279 (475)
Q Consensus 200 R~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l 279 (475)
.+..++.+.+++.+-.. ..-..+.|+|++|+|||||++.+++.......+. +.++ +..+++..+....
T Consensus 19 ~~~~~~~~~~~~~~~~~-----~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~------~~~~~~~~~~~~~ 86 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNP-----EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFF------DTKDLIFRLKHLM 86 (180)
T ss_dssp HHHHHHHHHHHHHSCCG-----GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEE------EHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc-----cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEE------EHHHHHHHHHHHh
Confidence 34445555555543111 2236789999999999999999987432122222 2233 3444555544444
Q ss_pred hcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCChhhHh--HhhCcCCC-CCCCcEEEEecCC
Q 046770 280 AMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWI--DLSRPFQD-GAPGSKIIITTRN 342 (475)
Q Consensus 280 ~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~--~l~~~l~~-~~~gs~ilvTtR~ 342 (475)
...... .....+. +.-+|||||++......|. .+...+.. ...|..+|+||..
T Consensus 87 ~~~~~~-----~~~~~~~-----~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 87 DEGKDT-----KFLKTVL-----NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp HHTCCS-----HHHHHHH-----TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCchHH-----HHHHHhc-----CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 322111 2222221 4569999999743323333 22222221 1246788888875
No 49
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.07 E-value=8e-05 Score=73.54 Aligned_cols=190 Identities=11% Similarity=0.046 Sum_probs=99.2
Q ss_pred ccccccchhHHHHHHHHhcCC---C-CCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHH
Q 046770 195 AKVYGRSKEREEIVELLLKED---G-TSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIR 270 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~---~-~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 270 (475)
.+++|.+..++.|.+++.... . ........+-+.|+|++|+|||+||+.+++. .... .+.++++.-...
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~~---~~~v~~~~l~~~-- 187 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNAT---FFNISAASLTSK-- 187 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTCE---EEEECSCCC-----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcCc---EEEeeHHHhhcc--
Confidence 468999999999988873200 0 0000012357899999999999999999873 2211 223333221110
Q ss_pred HHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCC-----------ChhhHhHhhCcCC---C-CCCCcE
Q 046770 271 VTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNE-----------NYNDWIDLSRPFQ---D-GAPGSK 335 (475)
Q Consensus 271 ~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~-----------~~~~~~~l~~~l~---~-~~~gs~ 335 (475)
. .......+...+...-...+.+|+||+++.. .......++..+. . ......
T Consensus 188 ~-------------~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~ 254 (389)
T 3vfd_A 188 Y-------------VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVL 254 (389)
T ss_dssp -----------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEE
T ss_pred c-------------cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEE
Confidence 0 0011111222222222345679999999432 0011112222211 1 123456
Q ss_pred EEEecCChHHH--HhcCCC-ceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchH-HHHHHHH
Q 046770 336 IIITTRNADAA--LIMGTV-QAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPL-AAKALGC 408 (475)
Q Consensus 336 ilvTtR~~~v~--~~~~~~-~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL-ai~~~~~ 408 (475)
||.||...... ...... ..+.+...+.++..+++...+..... . ...+....|++.+.|..- +|..+..
T Consensus 255 vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~---l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 255 VMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS-P---LTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp EEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC-C---SCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC-C---CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 66677653211 111222 46888899999999998876643221 1 123456778999988654 5555543
No 50
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.06 E-value=2.4e-06 Score=71.84 Aligned_cols=110 Identities=15% Similarity=0.125 Sum_probs=62.5
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHH
Q 046770 196 KVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSI 275 (475)
Q Consensus 196 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~i 275 (475)
.++|++..++++.+.+..... .. .-|.|+|++|+|||++|+.+++... -++.+.-........
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~-----~~-~~vll~G~~GtGKt~lA~~i~~~~~--------~~~~~~~~~~~~~~~--- 67 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK-----RT-SPVFLTGEAGSPFETVARYFHKNGT--------PWVSPARVEYLIDMP--- 67 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT-----CS-SCEEEEEETTCCHHHHHGGGCCTTS--------CEECCSSTTHHHHCH---
T ss_pred CceeCCHHHHHHHHHHHHHhC-----CC-CcEEEECCCCccHHHHHHHHHHhCC--------CeEEechhhCChHhh---
Confidence 578999988888887754111 11 2377999999999999999987432 222222111111111
Q ss_pred HHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCC-CCCcEEEEecCC
Q 046770 276 LRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDG-APGSKIIITTRN 342 (475)
Q Consensus 276 l~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~ 342 (475)
..+.+.. +.-.|+||++..........+...+... ..+.++|.||..
T Consensus 68 ------------------~~~~~~a--~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 68 ------------------MELLQKA--EGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp ------------------HHHHHHT--TTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred ------------------hhHHHhC--CCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 1111111 2347899999877655555555444322 345678888764
No 51
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.06 E-value=9.9e-06 Score=77.35 Aligned_cols=137 Identities=13% Similarity=0.150 Sum_probs=71.9
Q ss_pred cccccchhHHHHHHHHhcCCCC-CCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHH
Q 046770 196 KVYGRSKEREEIVELLLKEDGT-SHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKS 274 (475)
Q Consensus 196 ~~vGR~~e~~~l~~~L~~~~~~-~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~ 274 (475)
.++|.+..++.+...+...... .........+.|+|++|+|||++|+.+++.. ...-...+.+.++...... ...
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~--~~~~~~~~~~~~~~~~~~~-~~~- 93 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL--FDTEEAMIRIDMTEYMEKH-AVS- 93 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH--HSCGGGEEEEEGGGCCSTT-HHH-
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH--cCCCcceEEeecccccccc-cHH-
Confidence 4778888888887777541100 0000223578999999999999999998732 1111223445554432211 111
Q ss_pred HHHHhhcCCC---CCCChHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCCC-----------CCcEEEEec
Q 046770 275 ILRSVAMGIV---DHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDGA-----------PGSKIIITT 340 (475)
Q Consensus 275 il~~l~~~~~---~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTt 340 (475)
.+.+... .......+...+.. ...-+|+||++..........++..+.... ..+.+|.||
T Consensus 94 ---~l~g~~~~~~~~~~~~~~~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~tt 167 (311)
T 4fcw_A 94 ---RLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTS 167 (311)
T ss_dssp ---HHHCCCTTSTTTTTCCHHHHHHHH---CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEE
T ss_pred ---HhcCCCCccccccccchHHHHHHh---CCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEec
Confidence 1111111 11111222222222 234699999997766555555554442111 234477777
Q ss_pred CC
Q 046770 341 RN 342 (475)
Q Consensus 341 R~ 342 (475)
..
T Consensus 168 n~ 169 (311)
T 4fcw_A 168 NL 169 (311)
T ss_dssp ST
T ss_pred cc
Confidence 76
No 52
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.01 E-value=8e-05 Score=70.78 Aligned_cols=181 Identities=15% Similarity=0.061 Sum_probs=97.3
Q ss_pred ccccccchhHHHHHHHHhcC---C----CCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCC
Q 046770 195 AKVYGRSKEREEIVELLLKE---D----GTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFD 267 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~---~----~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~ 267 (475)
.+++|.+..++.|.+++... . .-+- ...+.+.|+|++|+|||+||+.+++.. ... ++.++
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~--~~~~~vLL~Gp~GtGKT~la~ala~~~--~~~-----~i~v~---- 81 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGM--TPSKGVLFYGPPGCGKTLLAKAIANEC--QAN-----FISIK---- 81 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC--CCCSEEEEECSSSSSHHHHHHHHHHHT--TCE-----EEEEC----
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCC--CCCceEEEECCCCcCHHHHHHHHHHHh--CCC-----EEEEE----
Confidence 46889988888887776421 0 0000 223578999999999999999999842 221 22222
Q ss_pred HHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCC--------------hhhHhHhhCcCC--CCC
Q 046770 268 IIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNEN--------------YNDWIDLSRPFQ--DGA 331 (475)
Q Consensus 268 ~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~--------------~~~~~~l~~~l~--~~~ 331 (475)
..++. ....+.. ...+...+.......+.+|+||++.... ......++..+. ...
T Consensus 82 ~~~l~----~~~~g~~-----~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~ 152 (301)
T 3cf0_A 82 GPELL----TMWFGES-----EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 152 (301)
T ss_dssp HHHHH----HHHHTTC-----TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTT
T ss_pred hHHHH----hhhcCch-----HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCC
Confidence 12222 2222211 1222233333334567899999995210 001222332221 122
Q ss_pred CCcEEEEecCChHHH-H-hcC---CCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHH
Q 046770 332 PGSKIIITTRNADAA-L-IMG---TVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLA 402 (475)
Q Consensus 332 ~gs~ilvTtR~~~v~-~-~~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLa 402 (475)
.+..||.||...... . ... -...+.+...+.++-.+++......... .....+. .+++.+.|.|-+
T Consensus 153 ~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~-~~~~~~~----~la~~~~g~sg~ 223 (301)
T 3cf0_A 153 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-AKDVDLE----FLAKMTNGFSGA 223 (301)
T ss_dssp SSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CSSCCHH----HHHHTCSSCCHH
T ss_pred CCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC-CccchHH----HHHHHcCCCCHH
Confidence 456778888765322 1 112 2256889999999888888776533221 1122233 366677776543
No 53
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.00 E-value=2.2e-05 Score=84.59 Aligned_cols=149 Identities=17% Similarity=0.129 Sum_probs=80.9
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcc---cccCcCeEEEEEecCCCCHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSR---VQCHFDLKAWTYVSQDFDIIRV 271 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~---~~~~F~~~~wv~v~~~~~~~~~ 271 (475)
..++||+.+++.+...|.. . ...-+.++|++|+|||++|+.+++... +.......-++.++-
T Consensus 180 d~iiG~~~~i~~l~~~l~~-~-------~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSR-R-------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHC-S-------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------
T ss_pred CCccCchHHHHHHHHHHhC-C-------CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-------
Confidence 3599999999999999976 2 223478999999999999999987421 000111111111111
Q ss_pred HHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCChHHHH----
Q 046770 272 TKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNADAAL---- 347 (475)
Q Consensus 272 l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~---- 347 (475)
+.. ........+...+......++.+|+||.- ......+...+. ....++|.||.......
T Consensus 245 --------g~~-~~G~~e~~l~~~~~~~~~~~~~iLfiD~~----~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~ 309 (758)
T 3pxi_A 245 --------GTK-YRGEFEDRLKKVMDEIRQAGNIILFIDAA----IDASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (758)
T ss_dssp -----------------CTTHHHHHHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred --------ccc-ccchHHHHHHHHHHHHHhcCCEEEEEcCc----hhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhc
Confidence 000 00011112223333344467889999921 112223333333 23456776666544211
Q ss_pred ---hcCCCceeeCCCCCHHHHHHHHhhcc
Q 046770 348 ---IMGTVQAYPLKGLSNDDCMCLFTQHS 373 (475)
Q Consensus 348 ---~~~~~~~~~l~~L~~~~~~~lf~~~~ 373 (475)
.......+.+.+.+.++..+++....
T Consensus 310 d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred cHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 11123568999999999999998654
No 54
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.99 E-value=2.1e-05 Score=74.86 Aligned_cols=146 Identities=9% Similarity=-0.023 Sum_probs=91.1
Q ss_pred chhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcc-cc-cCcCeEEEEEecC-CCCHHHHHHHHHH
Q 046770 201 SKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSR-VQ-CHFDLKAWTYVSQ-DFDIIRVTKSILR 277 (475)
Q Consensus 201 ~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~-~~F~~~~wv~v~~-~~~~~~~l~~il~ 277 (475)
++-++.|...+.. ++.+...++|++|+||||+|..+.+... .. .+.+. .++..+. ...+. .++.+++
T Consensus 3 ~~~~~~L~~~i~~--------~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id-~ir~li~ 72 (305)
T 2gno_A 3 KDQLETLKRIIEK--------SEGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGID-DIRTIKD 72 (305)
T ss_dssp -CHHHHHHHHHHT--------CSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHH-HHHHHHH
T ss_pred HHHHHHHHHHHHC--------CCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHH-HHHHHHH
Confidence 4455667777655 3357899999999999999999976311 11 23332 3444332 22222 2233444
Q ss_pred HhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCCh-HHHHhcCCCceee
Q 046770 278 SVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNA-DAALIMGTVQAYP 356 (475)
Q Consensus 278 ~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~~~~~~~~ 356 (475)
.+.... ..+++-++|+|+++..+......++..+......+.+|++|.++ .+....... .++
T Consensus 73 ~~~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~ 135 (305)
T 2gno_A 73 FLNYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFR 135 (305)
T ss_dssp HHTSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEE
T ss_pred HHhhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEe
Confidence 433221 12456789999998777667777777776555677777777553 222222233 899
Q ss_pred CCCCCHHHHHHHHhhcc
Q 046770 357 LKGLSNDDCMCLFTQHS 373 (475)
Q Consensus 357 l~~L~~~~~~~lf~~~~ 373 (475)
+.+++.++....+.+..
T Consensus 136 f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 136 VVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EECCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998765
No 55
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.93 E-value=5.3e-05 Score=81.67 Aligned_cols=156 Identities=17% Similarity=0.194 Sum_probs=87.6
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCccc---c-cCcCeEEEE-EecCCCCHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRV---Q-CHFDLKAWT-YVSQDFDII 269 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~---~-~~F~~~~wv-~v~~~~~~~ 269 (475)
..++||+.+++.+.+.|.. ....-+.|+|++|+|||++|+.+++.... . ....+.+|. ..+.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~--------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l---- 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCR--------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL---- 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTS--------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC------
T ss_pred CCccCCHHHHHHHHHHHhc--------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH----
Confidence 3589999999999999876 22345689999999999999999873211 0 112333332 11110
Q ss_pred HHHHHHHHHhhcCCCCCCChHH-HHHHHHHHhCCceEEEEEECCCCC--------ChhhHhHhhCcCCCCCCCcEEEEec
Q 046770 270 RVTKSILRSVAMGIVDHNDLNL-LQWKLKKQLFGKRFLLVLDDVWNE--------NYNDWIDLSRPFQDGAPGSKIIITT 340 (475)
Q Consensus 270 ~~l~~il~~l~~~~~~~~~~~~-l~~~l~~~l~~kr~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~gs~ilvTt 340 (475)
+.... ....... +...+......++.+|+|||++.. .......++..+... .+..+|.+|
T Consensus 254 ---------~~~~~-~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~-~~~~~I~at 322 (758)
T 1r6b_X 254 ---------LAGTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGST 322 (758)
T ss_dssp ----------CCCC-CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS-CCCEEEEEE
T ss_pred ---------hcccc-ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC-CCeEEEEEe
Confidence 00111 1112222 222333333445789999999653 122222333333322 345667776
Q ss_pred CChHHHHhc-------CCCceeeCCCCCHHHHHHHHhhcc
Q 046770 341 RNADAALIM-------GTVQAYPLKGLSNDDCMCLFTQHS 373 (475)
Q Consensus 341 R~~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~~ 373 (475)
......... .....+.+.+.+.++..+++....
T Consensus 323 ~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 323 TYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred CchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 654432111 122468899999999888887543
No 56
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.90 E-value=9.2e-05 Score=75.11 Aligned_cols=185 Identities=12% Similarity=0.095 Sum_probs=99.8
Q ss_pred ccccccchhHHHHHHHHhcC--C-C----CCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCC
Q 046770 195 AKVYGRSKEREEIVELLLKE--D-G----TSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFD 267 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~--~-~----~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~ 267 (475)
..++|.+..+++|.+++... . . -+. ...+-|.|+|++|+|||+||+.+++. ....| +.++++.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~--~~~~~vLL~GppGtGKT~lAraia~~--~~~~f---v~vn~~~--- 273 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGV--KPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE--- 273 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTC--CCCCEEEEECSTTSSHHHHHHHHHHH--CSSEE---EEEEHHH---
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCC--CCCCcEEEECcCCCCHHHHHHHHHHH--hCCCE---EEEEchH---
Confidence 35899999999988877531 0 0 000 22346889999999999999999873 22222 2233211
Q ss_pred HHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCC--------C---hhhHhHhhCcCC--CCCCCc
Q 046770 268 IIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNE--------N---YNDWIDLSRPFQ--DGAPGS 334 (475)
Q Consensus 268 ~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~--------~---~~~~~~l~~~l~--~~~~gs 334 (475)
+. ... .......+...+.....+++.+|+||++... . ......++..+. ....+.
T Consensus 274 -------l~----~~~-~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v 341 (489)
T 3hu3_A 274 -------IM----SKL-AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (489)
T ss_dssp -------HH----TSC-TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCE
T ss_pred -------hh----hhh-cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCce
Confidence 11 110 0111122233344444567789999998311 1 011222333322 122355
Q ss_pred EEEEecCChHH-HHhc----CCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCc-hHHHHHH
Q 046770 335 KIIITTRNADA-ALIM----GTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGL-PLAAKAL 406 (475)
Q Consensus 335 ~ilvTtR~~~v-~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~-PLai~~~ 406 (475)
.||.||..... ...+ .-...+.+...+.++-.+++..++..... .....+ ..+++.+.|. +-.+..+
T Consensus 342 ~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-~~~~~l----~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVDL----EQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-CTTCCH----HHHHHTCTTCCHHHHHHH
T ss_pred EEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-cchhhH----HHHHHHccCCcHHHHHHH
Confidence 77777776532 1111 12246889999999999999877643221 122223 4477778775 4444444
No 57
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.89 E-value=2.2e-05 Score=74.76 Aligned_cols=158 Identities=16% Similarity=0.071 Sum_probs=83.3
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcc-cccCcCeEEEEEecCCCCHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSR-VQCHFDLKAWTYVSQDFDIIRVTK 273 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~~~F~~~~wv~v~~~~~~~~~l~ 273 (475)
..++|+...+.++.+.+..... ....|.|+|++|+|||++|+.+.+... ....| +.++++... ..++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~---v~v~~~~~~--~~l~~ 70 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP------SDATVLIHGDSGTGKELVARALHACSARSDRPL---VTLNCAALN--ESLLE 70 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS------TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCC---CEEECSSCC--HHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhC------CCCcEEEECCCCchHHHHHHHHHHhCcccCCCe---EEEeCCCCC--hHHHH
Confidence 3588999999998888765221 123577999999999999999987321 11222 334444322 22222
Q ss_pred HHHHHhhcCCCCCCCh--HHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCC-----------CCCcEEEEec
Q 046770 274 SILRSVAMGIVDHNDL--NLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDG-----------APGSKIIITT 340 (475)
Q Consensus 274 ~il~~l~~~~~~~~~~--~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilvTt 340 (475)
. .+.+...+.-.. ......+... ..-+|+||++..........++..+... ....+||.||
T Consensus 71 ~---~lfg~~~g~~tg~~~~~~g~~~~a---~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~at 144 (304)
T 1ojl_A 71 S---ELFGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAAT 144 (304)
T ss_dssp H---HHTCCCSSCCC---CCCCCHHHHH---TTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEE
T ss_pred H---HhcCccccccCchhhhhcCHHHhc---CCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEec
Confidence 2 222221110000 0000111111 1247899999877655555554443321 1346788888
Q ss_pred CChHHH------------HhcCCCceeeCCCCC--HHHHHHHHh
Q 046770 341 RNADAA------------LIMGTVQAYPLKGLS--NDDCMCLFT 370 (475)
Q Consensus 341 R~~~v~------------~~~~~~~~~~l~~L~--~~~~~~lf~ 370 (475)
...-.. ..+ ....+.+.+|. .++...|+.
T Consensus 145 n~~l~~~v~~g~fr~~L~~Rl-~~~~i~lPpL~eR~edi~~l~~ 187 (304)
T 1ojl_A 145 HRDLAEEVSAGRFRQDLYYRL-NVVAIEMPSLRQRREDIPLLAD 187 (304)
T ss_dssp SSCHHHHHHHTSSCHHHHHHH-SSEEEECCCSGGGGGGHHHHHH
T ss_pred CccHHHHHHhCCcHHHHHhhc-CeeEEeccCHHHhHhhHHHHHH
Confidence 763111 111 13447788888 455555544
No 58
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.88 E-value=1.3e-05 Score=71.32 Aligned_cols=118 Identities=18% Similarity=0.160 Sum_probs=60.3
Q ss_pred hHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcC
Q 046770 203 EREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMG 282 (475)
Q Consensus 203 e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~ 282 (475)
.++.+.+++...... .....+.|+|++|+|||+||+.+++.. .......+|+++. ++...+...+.
T Consensus 37 ~~~~~~~~~~~~~~~----~~~~~~~l~G~~GtGKT~la~~i~~~~--~~~~~~~~~~~~~------~~~~~~~~~~~-- 102 (202)
T 2w58_A 37 AIRFAERFVAEYEPG----KKMKGLYLHGSFGVGKTYLLAAIANEL--AKRNVSSLIVYVP------ELFRELKHSLQ-- 102 (202)
T ss_dssp HHHHHHHHHHHCCSS----CCCCEEEEECSTTSSHHHHHHHHHHHH--HTTTCCEEEEEHH------HHHHHHHHC----
T ss_pred HHHHHHHHHHHhhhc----cCCCeEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEEhH------HHHHHHHHHhc--
Confidence 445556666541110 112578899999999999999999843 2223345565543 33333332221
Q ss_pred CCCCCChHHHHHHHHHHhCCceEEEEEECCCCCChhhHhH--hhC-cCCCC-CCCcEEEEecCC
Q 046770 283 IVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWID--LSR-PFQDG-APGSKIIITTRN 342 (475)
Q Consensus 283 ~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~--l~~-~l~~~-~~gs~ilvTtR~ 342 (475)
..........+.. .-+|||||++......|.. +.. .+... ..+..+|+||..
T Consensus 103 ---~~~~~~~~~~~~~-----~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 103 ---DQTMNEKLDYIKK-----VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp ----CCCHHHHHHHHH-----SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred ---cchHHHHHHHhcC-----CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 1122333333322 2399999996643333322 221 11111 235578888875
No 59
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.87 E-value=2.3e-05 Score=73.00 Aligned_cols=46 Identities=24% Similarity=0.203 Sum_probs=33.4
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 196 KVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 196 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.++|....+..+.+.+..... ....|.|+|++|+|||+||+.+++.
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~------~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAP------LDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTT------SCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred cceeCCHHHHHHHHHHHHHhC------CCCCEEEECCCCCcHHHHHHHHHHh
Confidence 478999998888877654111 1135779999999999999999875
No 60
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.78 E-value=8.1e-05 Score=75.12 Aligned_cols=100 Identities=10% Similarity=-0.037 Sum_probs=62.7
Q ss_pred EEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEe---------cC----C-hHHHHhcCCCceeeCCCCCHHHHHHHHh
Q 046770 305 FLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIIT---------TR----N-ADAALIMGTVQAYPLKGLSNDDCMCLFT 370 (475)
Q Consensus 305 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvT---------tR----~-~~v~~~~~~~~~~~l~~L~~~~~~~lf~ 370 (475)
-++++|+++..+.+....++..+.......-|+.| |. . .-.....+....+.+.+++.++..+++.
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL~ 376 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIK 376 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCCEEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHHH
Confidence 38999999887777788888777654444323344 32 1 0011222334557999999999999998
Q ss_pred hcccCCCCCCCCchHHHHHHHHHHhc-CCchHHHHHHHH
Q 046770 371 QHSLETRDFSMHQPLKEIGAKIVIKC-NGLPLAAKALGC 408 (475)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~I~~~c-~G~PLai~~~~~ 408 (475)
..+..... . -..+....|++.+ +|.|..+..+..
T Consensus 377 ~~~~~~~~-~---~~~~~~~~i~~~a~~g~~r~a~~ll~ 411 (456)
T 2c9o_A 377 IRAQTEGI-N---ISEEALNHLGEIGTKTTLRYSVQLLT 411 (456)
T ss_dssp HHHHHHTC-C---BCHHHHHHHHHHHHHSCHHHHHHTHH
T ss_pred HHHHHhCC-C---CCHHHHHHHHHHccCCCHHHHHHHHH
Confidence 76532111 1 1234566788888 788876655443
No 61
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.76 E-value=0.00013 Score=69.30 Aligned_cols=53 Identities=17% Similarity=0.247 Sum_probs=36.1
Q ss_pred ccccccchhHHHHHHHHhcC--CCCCC----CCCccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 195 AKVYGRSKEREEIVELLLKE--DGTSH----NNNHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~--~~~~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..++|.+..++.+...+... ..... .......+.|+|++|+|||++|+.+++.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45899999888888776430 00000 0012345789999999999999999873
No 62
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.70 E-value=1.6e-05 Score=67.14 Aligned_cols=86 Identities=15% Similarity=0.059 Sum_probs=49.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCce
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKR 304 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr 304 (475)
..+.|+|+.|+|||||++.+++..... .+ ..+++........ .+..+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~~~~~------------------------------~~~~~~ 84 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAASMPLT------------------------------DAAFEA 84 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETTTSCCC------------------------------GGGGGC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHHhhHH------------------------------HHHhCC
Confidence 478999999999999999998743221 11 2455554432221 011245
Q ss_pred EEEEEECCCCCChhhHhHhhCcCCC-CCCCc-EEEEecCC
Q 046770 305 FLLVLDDVWNENYNDWIDLSRPFQD-GAPGS-KIIITTRN 342 (475)
Q Consensus 305 ~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs-~ilvTtR~ 342 (475)
-+|||||+.......-..+...+.. ...|. .||+||+.
T Consensus 85 ~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 85 EYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp SEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 6899999966443222223222221 11233 48888874
No 63
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.70 E-value=0.00023 Score=70.46 Aligned_cols=51 Identities=29% Similarity=0.266 Sum_probs=36.1
Q ss_pred ccccccchhHHHHHHHHhcC---CC----CCCCCCccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 195 AKVYGRSKEREEIVELLLKE---DG----TSHNNNHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~---~~----~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.++.|-+..+++|.+.+.-. .+ -+- ...+-+.++|++|+|||+||+.+++.
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~--~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGI--DPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC--CCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC--CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46888888888877655320 00 001 33466899999999999999999984
No 64
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.67 E-value=0.00087 Score=61.84 Aligned_cols=185 Identities=15% Similarity=0.102 Sum_probs=91.3
Q ss_pred ccccccchhHHHHHHH---HhcCCCCCC-CCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHH
Q 046770 195 AKVYGRSKEREEIVEL---LLKEDGTSH-NNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIR 270 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~---L~~~~~~~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 270 (475)
.+++|.+..++++.+. +.....-.. .....+-+.|+|++|+||||||+.+++.. ...| +.++.+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~--~~~~---~~i~~~~~~~--- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA--KVPF---FTISGSDFVE--- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH--TCCE---EEECSCSSTT---
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc--CCCE---EEEeHHHHHH---
Confidence 4688988777666554 322100000 00112347899999999999999998742 2222 3333222111
Q ss_pred HHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCC----------h----hhHhHhhCcCC--CCCCCc
Q 046770 271 VTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNEN----------Y----NDWIDLSRPFQ--DGAPGS 334 (475)
Q Consensus 271 ~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~----------~----~~~~~l~~~l~--~~~~gs 334 (475)
. ........+...+.......+.++++|++.... . .....++..+. ....+.
T Consensus 84 -----------~-~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 151 (257)
T 1lv7_A 84 -----------M-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 151 (257)
T ss_dssp -----------S-CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCE
T ss_pred -----------H-hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCE
Confidence 0 011122233333444445567899999982110 0 11122222111 122355
Q ss_pred EEEEecCChHHH-Hh-cC---CCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCC-chHHHH
Q 046770 335 KIIITTRNADAA-LI-MG---TVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNG-LPLAAK 404 (475)
Q Consensus 335 ~ilvTtR~~~v~-~~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G-~PLai~ 404 (475)
.||.||...+.. .. .. -...+.+...+.++-.+++....-... ...... ...++..+.| .+--+.
T Consensus 152 ~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~-l~~~~~----~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 152 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP-LAPDID----AAIIARGTPGFSGADLA 222 (257)
T ss_dssp EEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTCC----HHHHHHTCTTCCHHHHH
T ss_pred EEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC-CCcccc----HHHHHHHcCCCCHHHHH
Confidence 677777664311 11 11 124677777788887777776542211 111111 2346777888 555444
No 65
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.65 E-value=0.00041 Score=67.83 Aligned_cols=180 Identities=19% Similarity=0.144 Sum_probs=95.1
Q ss_pred ccccccchhHHHHHHHHhcC---CC----CCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCC
Q 046770 195 AKVYGRSKEREEIVELLLKE---DG----TSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFD 267 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~---~~----~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~ 267 (475)
.++.|-++.+++|.+.+.-+ ++ -+- ...+-|.++|++|+|||.||+.+++. ....| +.++.+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi--~~prGvLL~GPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~s 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGI--AQPKGVILYGPPGTGKTLLARAVAHH--TDCKF---IRVSGAELVQ 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC--CCCCCEEEESCSSSSHHHHHHHHHHH--HTCEE---EEEEGGGGSC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC--CCCCceEEeCCCCCCHHHHHHHHHHh--hCCCc---eEEEhHHhhc
Confidence 45778888777776654320 00 001 23456889999999999999999984 23222 2333332111
Q ss_pred HHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCC--------hh------hHhHhhCcCC--CCC
Q 046770 268 IIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNEN--------YN------DWIDLSRPFQ--DGA 331 (475)
Q Consensus 268 ~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~--------~~------~~~~l~~~l~--~~~ 331 (475)
. ........+.......-...+++|+||++.... .. ....++..+. ...
T Consensus 221 --------------k-~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 285 (405)
T 4b4t_J 221 --------------K-YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS 285 (405)
T ss_dssp --------------S-STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC
T ss_pred --------------c-ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC
Confidence 0 001111111112222223568999999995321 00 1122222222 223
Q ss_pred CCcEEEEecCChHH---HHhc--CCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchH
Q 046770 332 PGSKIIITTRNADA---ALIM--GTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPL 401 (475)
Q Consensus 332 ~gs~ilvTtR~~~v---~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL 401 (475)
.+..||.||..++. |..- .-...+.+..-+.++-.++|+.+.-.... ...-++ ..|++.|.|.--
T Consensus 286 ~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l-~~dvdl----~~lA~~t~G~SG 355 (405)
T 4b4t_J 286 KNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNL-TRGINL----RKVAEKMNGCSG 355 (405)
T ss_dssp CCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBC-CSSCCH----HHHHHHCCSCCH
T ss_pred CCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCC-CccCCH----HHHHHHCCCCCH
Confidence 45567777776432 2211 23367888888888888888766533211 122233 447788888643
No 66
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.64 E-value=0.00039 Score=68.98 Aligned_cols=180 Identities=16% Similarity=0.151 Sum_probs=94.9
Q ss_pred ccccccchhHHHHHHHHhcC---CC----CCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCC
Q 046770 195 AKVYGRSKEREEIVELLLKE---DG----TSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFD 267 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~---~~----~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~ 267 (475)
.++.|-+..+++|.+.+.-. ++ .+- ...+-|.++|++|+|||+||+.+++.. ...| +.++.+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~--~~prGvLL~GPPGtGKTllAkAiA~e~--~~~~---~~v~~s~l~s 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGI--KPPKGVLLYGPPGTGKTLLAKAVAATI--GANF---IFSPASGIVD 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC--CCCCEEEEESCTTSSHHHHHHHHHHHH--TCEE---EEEEGGGTCC
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC--CCCCeEEEECCCCCcHHHHHHHHHHHh--CCCE---EEEehhhhcc
Confidence 45788888777776655320 00 001 334678999999999999999999842 2222 2333333211
Q ss_pred HHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCC----------h----hhHhHhhCcCC--CCC
Q 046770 268 IIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNEN----------Y----NDWIDLSRPFQ--DGA 331 (475)
Q Consensus 268 ~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~----------~----~~~~~l~~~l~--~~~ 331 (475)
. ........+.......-...+++|+||++.... . .....++..+. ...
T Consensus 254 --------------k-~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 318 (437)
T 4b4t_L 254 --------------K-YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL 318 (437)
T ss_dssp --------------S-SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT
T ss_pred --------------c-cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC
Confidence 0 000111111111222223568999999995310 0 01223333322 223
Q ss_pred CCcEEEEecCChHHHH--hcCC---CceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchH
Q 046770 332 PGSKIIITTRNADAAL--IMGT---VQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPL 401 (475)
Q Consensus 332 ~gs~ilvTtR~~~v~~--~~~~---~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL 401 (475)
.+..||.||..++... .... ...+.+...+.++-.++|+.+...... ...-++ ..|++.+.|.--
T Consensus 319 ~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~dl----~~lA~~t~G~sG 388 (437)
T 4b4t_L 319 GQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEFDF----EAAVKMSDGFNG 388 (437)
T ss_dssp TSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCCCH----HHHHHTCCSCCH
T ss_pred CCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-CcccCH----HHHHHhCCCCCH
Confidence 4567788887654321 1112 245778777888888888766533221 112233 447788888643
No 67
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.64 E-value=0.00061 Score=67.58 Aligned_cols=178 Identities=15% Similarity=0.113 Sum_probs=93.2
Q ss_pred cccccchhHHHHHHHHhc---CCC----CCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCH
Q 046770 196 KVYGRSKEREEIVELLLK---EDG----TSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDI 268 (475)
Q Consensus 196 ~~vGR~~e~~~l~~~L~~---~~~----~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~ 268 (475)
++.|-++.+++|.+.+.- ..+ -+- ...+-|.++|++|+|||+||+.+++. ....| +.++.+.-.+
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi--~pprGILLyGPPGTGKTlLAkAiA~e--~~~~f---i~vs~s~L~s- 281 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGI--DPPKGILLYGPPGTGKTLCARAVANR--TDATF---IRVIGSELVQ- 281 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTC--CCCSEEEECSCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGGCC-
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCC--CCCCceEeeCCCCCcHHHHHHHHHhc--cCCCe---EEEEhHHhhc-
Confidence 578888888777665421 000 001 34567889999999999999999984 23222 2333322111
Q ss_pred HHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCC--------h------hhHhHhhCcCC--CCCC
Q 046770 269 IRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNEN--------Y------NDWIDLSRPFQ--DGAP 332 (475)
Q Consensus 269 ~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~--------~------~~~~~l~~~l~--~~~~ 332 (475)
. ........+.......-...+++|+||++.... . .....++..+. ....
T Consensus 282 -------------k-~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 282 -------------K-YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp -------------C-SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred -------------c-cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence 0 001111111122222223568999999995321 0 01112222221 1223
Q ss_pred CcEEEEecCChHH---HHhc--CCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCch
Q 046770 333 GSKIIITTRNADA---ALIM--GTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLP 400 (475)
Q Consensus 333 gs~ilvTtR~~~v---~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P 400 (475)
+..||.||...+. +..- .-...+.+...+.++-.++|+.+...... ...-++ ..|++.|.|.-
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l-~~dvdl----~~LA~~T~GfS 415 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSV-ERGIRW----ELISRLCPNST 415 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCB-CSSCCH----HHHHHHCCSCC
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCC-CCCCCH----HHHHHHCCCCC
Confidence 4566777765432 2111 23366888888888888888766533211 112233 44778888864
No 68
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.63 E-value=0.00044 Score=66.65 Aligned_cols=179 Identities=17% Similarity=0.094 Sum_probs=93.5
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKS 274 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~ 274 (475)
..++|.+..++.+...+.. ....+ .....+.|+|++|+||||||+.+++.. ...|. ..+..-....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~-~~~~~--~~~~~~ll~Gp~G~GKTTLa~~ia~~l--~~~~~---~~sg~~~~~~------ 90 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEA-AKMRG--EVLDHVLLAGPPGLGKTTLAHIIASEL--QTNIH---VTSGPVLVKQ------ 90 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHH-HHHHT--CCCCCEEEESSTTSSHHHHHHHHHHHH--TCCEE---EEETTTCCSH------
T ss_pred HHccCcHHHHHHHHHHHHH-HHhcC--CCCCeEEEECCCCCcHHHHHHHHHHHh--CCCEE---EEechHhcCH------
Confidence 4578887777777666543 10000 233568999999999999999999832 21111 1111110111
Q ss_pred HHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCC--------C----------CCcEE
Q 046770 275 ILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDG--------A----------PGSKI 336 (475)
Q Consensus 275 il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~--------~----------~gs~i 336 (475)
..+...+ ..+ .++.++++|++........+.+...+... . ....+
T Consensus 91 ---------------~~l~~~~-~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~l 153 (334)
T 1in4_A 91 ---------------GDMAAIL-TSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL 153 (334)
T ss_dssp ---------------HHHHHHH-HHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEE
T ss_pred ---------------HHHHHHH-HHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEE
Confidence 1111111 112 23457788988654432233332111100 0 11222
Q ss_pred E-EecCChHHHHhc--CCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHHH
Q 046770 337 I-ITTRNADAALIM--GTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPLAAKALGC 408 (475)
Q Consensus 337 l-vTtR~~~v~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~ 408 (475)
+ .|++...+.... .......+++.+.++..+++.+.+..... ....+.+..|++.+.|.|-.+..+..
T Consensus 154 i~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~----~~~~~~~~~ia~~~~G~~R~a~~ll~ 224 (334)
T 1in4_A 154 VGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV----EIEDAAAEMIAKRSRGTPRIAIRLTK 224 (334)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC----CBCHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred EEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHhcCCChHHHHHHHH
Confidence 2 344432221111 12235789999999999999876532211 12246678899999999986654443
No 69
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.60 E-value=0.00021 Score=77.02 Aligned_cols=157 Identities=12% Similarity=0.134 Sum_probs=86.5
Q ss_pred ccccccchhHHHHHHHHhcCCCCC-CCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTS-HNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTK 273 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~ 273 (475)
..++|.+..++.+...+.....+. ........+.++|++|+|||+||+.+++.. ...-...+.++++...+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l--~~~~~~~i~i~~s~~~~~~~--- 565 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI--FGDEESMIRIDMSEYMEKHS--- 565 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH--HSCTTCEEEEEGGGGCSSCC---
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh--cCCCcceEEEechhcccccc---
Confidence 458899998888888776422111 101233478999999999999999998742 11112334455443221000
Q ss_pred HHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCC-----------CCCCcEEEEecCC
Q 046770 274 SILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQD-----------GAPGSKIIITTRN 342 (475)
Q Consensus 274 ~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~-----------~~~gs~ilvTtR~ 342 (475)
. ....+...++. ....+|+||++..........++..+.. ....+.||+||..
T Consensus 566 -----------~--~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 566 -----------T--SGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp -----------C--C---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred -----------c--ccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 0 01111112221 2334899999977666555555544332 1235688888873
Q ss_pred h-----HH----HH-----hcCC-CceeeCCCCCHHHHHHHHhhc
Q 046770 343 A-----DA----AL-----IMGT-VQAYPLKGLSNDDCMCLFTQH 372 (475)
Q Consensus 343 ~-----~v----~~-----~~~~-~~~~~l~~L~~~~~~~lf~~~ 372 (475)
. .+ .. .... ...+.+.+++.++...++...
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 1 11 11 1122 257888999988888777654
No 70
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.55 E-value=4.4e-05 Score=71.18 Aligned_cols=157 Identities=14% Similarity=0.091 Sum_probs=79.5
Q ss_pred ccccccchhHHHHHHHHhcCCCC------CCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGT------SHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDI 268 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~------~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~ 268 (475)
.+++|.+..++.+.+.+...... +. ...+-+.|+|++|+|||+||+.+++.. ...|- .+..+.-.+
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~vll~G~~GtGKT~la~~la~~~--~~~~~---~v~~~~~~~- 82 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGA--KIPKGVLLVGPPGTGKTLLAKAVAGEA--HVPFF---SMGGSSFIE- 82 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSC--CCCSCCCCBCSSCSSHHHHHHHHHHHH--TCCCC---CCCSCTTTT-
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCC--CCCceEEEECCCCCcHHHHHHHHHHHh--CCCEE---EechHHHHH-
Confidence 46889888877777655310000 00 112237799999999999999998842 22221 111111000
Q ss_pred HHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCCh---------------hhHhHhhCcCCC---C
Q 046770 269 IRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENY---------------NDWIDLSRPFQD---G 330 (475)
Q Consensus 269 ~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~---------------~~~~~l~~~l~~---~ 330 (475)
.+... .......+ +......++.+|+|||+..... .....++..+.. .
T Consensus 83 ---------~~~~~--~~~~~~~~---~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (268)
T 2r62_A 83 ---------MFVGL--GASRVRDL---FETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSE 148 (268)
T ss_dssp ---------SCSSS--CSSSSSTT---HHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCS
T ss_pred ---------hhcch--HHHHHHHH---HHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccC
Confidence 00000 11111111 2222224567999999953211 012233333321 1
Q ss_pred CCCcEEEEecCChHHH--HhcC---CCceeeCCCCCHHHHHHHHhhcc
Q 046770 331 APGSKIIITTRNADAA--LIMG---TVQAYPLKGLSNDDCMCLFTQHS 373 (475)
Q Consensus 331 ~~gs~ilvTtR~~~v~--~~~~---~~~~~~l~~L~~~~~~~lf~~~~ 373 (475)
.....||.||...... .... -...+.+...+.++-.+++...+
T Consensus 149 ~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 149 NAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp CSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred CCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 1235677777765321 1111 12457888888888888887665
No 71
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.00021 Score=70.92 Aligned_cols=178 Identities=15% Similarity=0.090 Sum_probs=91.3
Q ss_pred ccccccchhHHHHHHHHhcC---CC----CCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCC
Q 046770 195 AKVYGRSKEREEIVELLLKE---DG----TSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFD 267 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~---~~----~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~ 267 (475)
.++.|-++.+++|.+.+.-. ++ .+- ...+-|.++|++|+|||+||+.+++. ....| +.++.+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~--~~prGvLLyGPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~~ 253 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGI--RAPKGALMYGPPGTGKTLLARACAAQ--TNATF---LKLAAPQLVQ 253 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC--CCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGGCS
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC--CCCCeeEEECcCCCCHHHHHHHHHHH--hCCCE---EEEehhhhhh
Confidence 46888888888887654210 10 011 33567899999999999999999984 22222 2233322111
Q ss_pred HHHHHHHHHHHhhcCCCCCCChHHHHHHHH-HHhCCceEEEEEECCCC------CCh----h----hHhHhhCcCC--CC
Q 046770 268 IIRVTKSILRSVAMGIVDHNDLNLLQWKLK-KQLFGKRFLLVLDDVWN------ENY----N----DWIDLSRPFQ--DG 330 (475)
Q Consensus 268 ~~~~l~~il~~l~~~~~~~~~~~~l~~~l~-~~l~~kr~LlVlDdv~~------~~~----~----~~~~l~~~l~--~~ 330 (475)
. ..... ....+.+. ..-...+++|+||++.. ... . ....++..+. ..
T Consensus 254 --------------~-~vGes-e~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~ 317 (434)
T 4b4t_M 254 --------------M-YIGEG-AKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS 317 (434)
T ss_dssp --------------S-CSSHH-HHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS
T ss_pred --------------c-ccchH-HHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCC
Confidence 0 00001 11111111 11124579999999831 000 0 1122333332 12
Q ss_pred CCCcEEEEecCChHHHH-h-cC---CCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCch
Q 046770 331 APGSKIIITTRNADAAL-I-MG---TVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLP 400 (475)
Q Consensus 331 ~~gs~ilvTtR~~~v~~-~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P 400 (475)
..+..||.||..++... . .. -...+.+...+.++-.++|+.+.-.... ...-++ ..|++.+.|.-
T Consensus 318 ~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~dvdl----~~lA~~t~G~s 387 (434)
T 4b4t_M 318 DDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT-DDDINW----QELARSTDEFN 387 (434)
T ss_dssp SCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB-CSCCCH----HHHHHHCSSCC
T ss_pred CCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC-CCcCCH----HHHHHhCCCCC
Confidence 23456676777643321 1 11 1245778888888888888755432111 111223 44778888753
No 72
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.47 E-value=0.00098 Score=67.08 Aligned_cols=179 Identities=13% Similarity=0.069 Sum_probs=94.3
Q ss_pred ccccccchhHHHHHHHHhcC--CC----CCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCH
Q 046770 195 AKVYGRSKEREEIVELLLKE--DG----TSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDI 268 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~--~~----~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~ 268 (475)
.+++|.+..++++.+.+... .. -+. .-.+-+.|+|++|+|||+||+.+++.. ...| +.++++.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~--~~p~gvLL~GppGtGKT~Laraia~~~--~~~f---~~is~~~~~~~ 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGA--RMPKGILLVGPPGTGKTLLARAVAGEA--NVPF---FHISGSDFVEL 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTC--CCCSEEEEECCTTSSHHHHHHHHHHHH--TCCE---EEEEGGGTTTC
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCC--CCCCeEEEECCCCCCHHHHHHHHHHHc--CCCe---eeCCHHHHHHH
Confidence 46889887766665543210 10 000 112347899999999999999999832 2222 23333322110
Q ss_pred HHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCCh--------------hhHhHhhCcCC--CCCC
Q 046770 269 IRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENY--------------NDWIDLSRPFQ--DGAP 332 (475)
Q Consensus 269 ~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~--------------~~~~~l~~~l~--~~~~ 332 (475)
+ ...........+.......+.+|+||++..... .....++..+. ....
T Consensus 89 ----------~-----~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~ 153 (476)
T 2ce7_A 89 ----------F-----VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKE 153 (476)
T ss_dssp ----------C-----TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGG
T ss_pred ----------H-----hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCC
Confidence 0 000111222334444456789999999943210 11223332221 1124
Q ss_pred CcEEEEecCChHHHH--hcC---CCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCch
Q 046770 333 GSKIIITTRNADAAL--IMG---TVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLP 400 (475)
Q Consensus 333 gs~ilvTtR~~~v~~--~~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P 400 (475)
+..||.||...+... ... -...+.+...+.++-.+++..++....- ..... ...|++.+.|..
T Consensus 154 ~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l-~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 154 GIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPL-AEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp TEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHTCTTCC
T ss_pred CEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCC-cchhh----HHHHHHhcCCCc
Confidence 567788887764321 112 1236788888888877888765532211 11112 234788888877
No 73
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.39 E-value=0.00079 Score=69.32 Aligned_cols=165 Identities=16% Similarity=0.128 Sum_probs=77.5
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKS 274 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~ 274 (475)
.+++|-+.-...+.+.+.-..-... ....++.|+|++|+||||||+.++... ...| .-++++...+...+...
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~--~~g~~vll~Gp~GtGKTtlar~ia~~l--~~~~---~~i~~~~~~~~~~~~g~ 153 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKS--LKGPILCLAGPPGVGKTSLAKSIAKSL--GRKF---VRISLGGVRDESEIRGH 153 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSS--CCSCEEEEESSSSSSHHHHHHHHHHHH--TCEE---EEECCCC----------
T ss_pred HHhccHHHHHHHHHHHHHHHHhccc--CCCCEEEEECCCCCCHHHHHHHHHHhc--CCCe---EEEEecccchhhhhhhH
Confidence 4578877766666544321000000 123589999999999999999998732 2111 22233322221111111
Q ss_pred HHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCChh----hHhHhhCcCCCCC---------------CCcE
Q 046770 275 ILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYN----DWIDLSRPFQDGA---------------PGSK 335 (475)
Q Consensus 275 il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~----~~~~l~~~l~~~~---------------~gs~ 335 (475)
.-..++ .........+... ....-+++||++...... ....++..+.... ....
T Consensus 154 ~~~~ig------~~~~~~~~~~~~a-~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~ 226 (543)
T 3m6a_A 154 RRTYVG------AMPGRIIQGMKKA-GKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVL 226 (543)
T ss_dssp ----------------CHHHHHHTT-CSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCE
T ss_pred HHHHhc------cCchHHHHHHHHh-hccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceE
Confidence 000000 0001111122222 223448889999754322 1233333332111 3346
Q ss_pred EEEecCChHHH--HhcCCCceeeCCCCCHHHHHHHHhhcc
Q 046770 336 IIITTRNADAA--LIMGTVQAYPLKGLSNDDCMCLFTQHS 373 (475)
Q Consensus 336 ilvTtR~~~v~--~~~~~~~~~~l~~L~~~~~~~lf~~~~ 373 (475)
||.||...... ........+.+.+++.++-..++..+.
T Consensus 227 iI~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 227 FIATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EEEECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred EEeccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 77777653210 111122568999999999988888764
No 74
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.38 E-value=0.00066 Score=66.71 Aligned_cols=178 Identities=16% Similarity=0.120 Sum_probs=91.7
Q ss_pred ccccccchhHHHHHHHHhc---CCC----CCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCC
Q 046770 195 AKVYGRSKEREEIVELLLK---EDG----TSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFD 267 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~---~~~----~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~ 267 (475)
.++-|-++.+++|.+.+.- ..+ -+. ...+-|.++|++|.|||.||+.+++.. ...| +.++.+.-.+
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi--~~prGvLLyGPPGTGKTlLAkAiA~e~--~~~f---i~v~~s~l~s 254 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGI--KPPKGVILYGAPGTGKTLLAKAVANQT--SATF---LRIVGSELIQ 254 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC--CCCSEEEEESSTTTTHHHHHHHHHHHH--TCEE---EEEESGGGCC
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC--CCCCCCceECCCCchHHHHHHHHHHHh--CCCE---EEEEHHHhhh
Confidence 4577888877777665421 010 001 234678999999999999999999842 2222 2223222111
Q ss_pred HHHHHHHHHHHhhcCCCCCCChHHHHHHH-HHHhCCceEEEEEECCCCCC--------------hhhHhHhhCcCC--CC
Q 046770 268 IIRVTKSILRSVAMGIVDHNDLNLLQWKL-KKQLFGKRFLLVLDDVWNEN--------------YNDWIDLSRPFQ--DG 330 (475)
Q Consensus 268 ~~~~l~~il~~l~~~~~~~~~~~~l~~~l-~~~l~~kr~LlVlDdv~~~~--------------~~~~~~l~~~l~--~~ 330 (475)
. .... .+...+.+ ...-...+++|+||++.... ......++..+. ..
T Consensus 255 --------------k-~vGe-sek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~ 318 (437)
T 4b4t_I 255 --------------K-YLGD-GPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD 318 (437)
T ss_dssp --------------S-SSSH-HHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC
T ss_pred --------------c-cCch-HHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC
Confidence 0 0001 11111111 12223568999999985210 001222222221 22
Q ss_pred CCCcEEEEecCChHHHHh--cCC---CceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCch
Q 046770 331 APGSKIIITTRNADAALI--MGT---VQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLP 400 (475)
Q Consensus 331 ~~gs~ilvTtR~~~v~~~--~~~---~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P 400 (475)
..+..||.||...+.... ... ...+.+..-+.++-.++|..+.-... ....-++ ..|++.+.|.-
T Consensus 319 ~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~-l~~dvdl----~~LA~~T~GfS 388 (437)
T 4b4t_I 319 RGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN-LSEDVNL----ETLVTTKDDLS 388 (437)
T ss_dssp SSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC-BCSCCCH----HHHHHHCCSCC
T ss_pred CCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC-CCCcCCH----HHHHHhCCCCC
Confidence 345567777776543211 111 23577777788888888876653321 1122233 34777888763
No 75
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.28 E-value=0.00035 Score=76.16 Aligned_cols=137 Identities=13% Similarity=0.160 Sum_probs=71.2
Q ss_pred cccccchhHHHHHHHHhcCCCC-CCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHH
Q 046770 196 KVYGRSKEREEIVELLLKEDGT-SHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKS 274 (475)
Q Consensus 196 ~~vGR~~e~~~l~~~L~~~~~~-~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~ 274 (475)
.++|.+..++.+...+.....+ ...+.....+.|+|++|+|||++|+.+.+... ..-...+.++++...... .
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~--~~~~~~i~i~~~~~~~~~-~--- 632 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF--DTEEAMIRIDMTEYMEKH-A--- 632 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH--SSGGGEEEECTTTCCSSG-G---
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc--CCCCcEEEEechhccchh-H---
Confidence 5789999888888877541110 00002345789999999999999999987321 111123344444322210 0
Q ss_pred HHHHhhcCCC---CCCChHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCCC-----------CCcEEEEec
Q 046770 275 ILRSVAMGIV---DHNDLNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDGA-----------PGSKIIITT 340 (475)
Q Consensus 275 il~~l~~~~~---~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTt 340 (475)
...+.+..+ +......+...++. ...-+|+||++..........++..+..+. .++.||+||
T Consensus 633 -~s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~ts 708 (854)
T 1qvr_A 633 -VSRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTS 708 (854)
T ss_dssp -GGGC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEEC
T ss_pred -HHHHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEec
Confidence 001110000 11111122222222 224589999997776666666665554321 244578888
Q ss_pred CC
Q 046770 341 RN 342 (475)
Q Consensus 341 R~ 342 (475)
..
T Consensus 709 n~ 710 (854)
T 1qvr_A 709 NL 710 (854)
T ss_dssp CT
T ss_pred Cc
Confidence 75
No 76
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.24 E-value=0.0051 Score=65.67 Aligned_cols=182 Identities=12% Similarity=0.072 Sum_probs=96.4
Q ss_pred ccccccchhHHHHHHHHh----cCCC-CCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHH
Q 046770 195 AKVYGRSKEREEIVELLL----KEDG-TSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDII 269 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~----~~~~-~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 269 (475)
.++.|-++.+++|.+++. .... ..-.-...+-|.++|++|+|||+||+.+++.. ..+| +.|+.++
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el--g~~~---~~v~~~~----- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET--GAFF---FLINGPE----- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT--TCEE---EEEEHHH-----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh--CCeE---EEEEhHH-----
Confidence 357788888777776542 2110 00001345678999999999999999999843 3222 3333221
Q ss_pred HHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCC-------hh----hHhHhhCcCC--CCCCCcEE
Q 046770 270 RVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNEN-------YN----DWIDLSRPFQ--DGAPGSKI 336 (475)
Q Consensus 270 ~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~-------~~----~~~~l~~~l~--~~~~gs~i 336 (475)
++ .. ........+...+.......+.+|+||++.... .. ...+++..+. ....+..|
T Consensus 274 -----l~----sk-~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~V 343 (806)
T 3cf2_A 274 -----IM----SK-LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp -----HH----SS-CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEE
T ss_pred -----hh----cc-cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEE
Confidence 11 11 111122223333444445678999999984311 00 1122222221 11234456
Q ss_pred EEecCChHH-HHhcC----CCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCchH
Q 046770 337 IITTRNADA-ALIMG----TVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLPL 401 (475)
Q Consensus 337 lvTtR~~~v-~~~~~----~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL 401 (475)
|.||...+. ...+. -...+.+...+.++-.++|..+...... ....++ ..|++++.|.--
T Consensus 344 IaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~-~~dvdl----~~lA~~T~Gfsg 408 (806)
T 3cf2_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVDL----EQVANETHGHVG 408 (806)
T ss_dssp EEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEE-CTTCCH----HHHHHHCCSCCH
T ss_pred EEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCC-CcccCH----HHHHHhcCCCCH
Confidence 666665432 11111 2256888888888888888876533211 122233 347788888753
No 77
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.24 E-value=0.002 Score=65.31 Aligned_cols=43 Identities=21% Similarity=0.230 Sum_probs=35.4
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCc
Q 046770 196 KVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDS 248 (475)
Q Consensus 196 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 248 (475)
.++|.+..++.+...+.. . .-|.|+|++|+|||+||+.+.+..
T Consensus 23 ~ivGq~~~i~~l~~al~~-~---------~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS-G---------ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH-T---------CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhHHHHHHHHHHHHHHhc-C---------CeeEeecCchHHHHHHHHHHHHHH
Confidence 578988888888877765 2 357899999999999999999843
No 78
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.23 E-value=0.00025 Score=76.42 Aligned_cols=134 Identities=16% Similarity=0.138 Sum_probs=69.9
Q ss_pred cccccchhHHHHHHHHhcCCCCC-CCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHH
Q 046770 196 KVYGRSKEREEIVELLLKEDGTS-HNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKS 274 (475)
Q Consensus 196 ~~vGR~~e~~~l~~~L~~~~~~~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~ 274 (475)
.++|.+..++.+...+.....+. ..+.....+.++|++|+|||++|+.+.+.. . ...+.++++.......
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l--~---~~~~~i~~s~~~~~~~---- 529 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--G---IELLRFDMSEYMERHT---- 529 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH--T---CEEEEEEGGGCSSSSC----
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh--c---CCEEEEechhhcchhh----
Confidence 47888888888877665311110 001234578999999999999999998732 1 1233344443221100
Q ss_pred HHHHhhcCCCCCCC---hHHHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCC-----------CCCcEEEEec
Q 046770 275 ILRSVAMGIVDHND---LNLLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDG-----------APGSKIIITT 340 (475)
Q Consensus 275 il~~l~~~~~~~~~---~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilvTt 340 (475)
...+.+..++... ...+...++. ....+|+||++..........++..+..+ -..+.||.||
T Consensus 530 -~~~l~g~~~g~~g~~~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~ts 605 (758)
T 1r6b_X 530 -VSRLIGAPPGYVGFDQGGLLTDAVIK---HPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTT 605 (758)
T ss_dssp -CSSSCCCCSCSHHHHHTTHHHHHHHH---CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEE
T ss_pred -HhhhcCCCCCCcCccccchHHHHHHh---CCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEec
Confidence 0000011111000 0112222222 33579999999776665555555544321 1235578887
Q ss_pred CC
Q 046770 341 RN 342 (475)
Q Consensus 341 R~ 342 (475)
..
T Consensus 606 N~ 607 (758)
T 1r6b_X 606 NA 607 (758)
T ss_dssp CS
T ss_pred Cc
Confidence 64
No 79
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.22 E-value=0.0015 Score=61.57 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=22.5
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
...+.+.++|++|+|||+||+.+++.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567889999999999999999984
No 80
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.20 E-value=0.00015 Score=69.12 Aligned_cols=42 Identities=14% Similarity=0.198 Sum_probs=28.9
Q ss_pred chhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 201 SKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 201 ~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
...+..+.+++..... .....+.|+|++|+|||+||..+++.
T Consensus 134 ~~~~~~~~~~i~~~~~-----~~~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPS-----AEQKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp HHHHHHHHHHHHHCSC-----SSCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc-----cCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3344455566654111 11357889999999999999999884
No 81
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.20 E-value=0.00018 Score=68.05 Aligned_cols=68 Identities=21% Similarity=0.330 Sum_probs=44.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEe--cCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYV--SQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFG 302 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v--~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 302 (475)
+++.|+|++|+|||+||.+++.. . -..++|++. .+..+. ...+.+.....+.+.+..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~---~--G~~VlyIs~~~eE~v~~----------------~~~~le~~l~~i~~~l~~ 182 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA---L--GGKDKYATVRFGEPLSG----------------YNTDFNVFVDDIARAMLQ 182 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH---H--HTTSCCEEEEBSCSSTT----------------CBCCHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh---C--CCCEEEEEecchhhhhh----------------hhcCHHHHHHHHHHHHhh
Confidence 57789999999999999999873 1 123456666 332110 003445555556666655
Q ss_pred ceEEEEEECCCC
Q 046770 303 KRFLLVLDDVWN 314 (475)
Q Consensus 303 kr~LlVlDdv~~ 314 (475)
.+ +||||++..
T Consensus 183 ~~-LLVIDsI~a 193 (331)
T 2vhj_A 183 HR-VIVIDSLKN 193 (331)
T ss_dssp CS-EEEEECCTT
T ss_pred CC-EEEEecccc
Confidence 55 999999954
No 82
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.19 E-value=0.0013 Score=63.05 Aligned_cols=151 Identities=12% Similarity=0.079 Sum_probs=83.8
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHH
Q 046770 196 KVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSI 275 (475)
Q Consensus 196 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~i 275 (475)
.++|++..++.+...+.. . .-+.++|++|+|||+||+.+.+. ....| ..+.+.......+++...
T Consensus 28 ~i~g~~~~~~~l~~~l~~-~---------~~vll~G~pGtGKT~la~~la~~--~~~~~---~~i~~~~~~~~~~l~g~~ 92 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICT-G---------GHILLEGVPGLAKTLSVNTLAKT--MDLDF---HRIQFTPDLLPSDLIGTM 92 (331)
T ss_dssp TCCSCHHHHHHHHHHHHH-T---------CCEEEESCCCHHHHHHHHHHHHH--TTCCE---EEEECCTTCCHHHHHEEE
T ss_pred ceeCcHHHHHHHHHHHHc-C---------CeEEEECCCCCcHHHHHHHHHHH--hCCCe---EEEecCCCCChhhcCCce
Confidence 588999988888887765 2 24789999999999999999873 22222 223333333333221110
Q ss_pred HHHhhcCCCCCCChHHHHHHHHHHhCC--ceEEEEEECCCCCChhhHhHhhCcCCC-----------CCCCcEEEEecCC
Q 046770 276 LRSVAMGIVDHNDLNLLQWKLKKQLFG--KRFLLVLDDVWNENYNDWIDLSRPFQD-----------GAPGSKIIITTRN 342 (475)
Q Consensus 276 l~~l~~~~~~~~~~~~l~~~l~~~l~~--kr~LlVlDdv~~~~~~~~~~l~~~l~~-----------~~~gs~ilvTtR~ 342 (475)
.... ...... ...+ ...+++||++...+......+...+.. ......|+.|+..
T Consensus 93 ----~~~~-~~~~~~--------~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np 159 (331)
T 2r44_A 93 ----IYNQ-HKGNFE--------VKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNP 159 (331)
T ss_dssp ----EEET-TTTEEE--------EEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECT
T ss_pred ----eecC-CCCceE--------eccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCC
Confidence 0000 000000 0000 125899999976655444444433221 1234566666653
Q ss_pred hH------H-HHhcCCCc-eeeCCCCCHHHHHHHHhhccc
Q 046770 343 AD------A-ALIMGTVQ-AYPLKGLSNDDCMCLFTQHSL 374 (475)
Q Consensus 343 ~~------v-~~~~~~~~-~~~l~~L~~~~~~~lf~~~~~ 374 (475)
.. + ........ .+.+.+.+.++-.+++.+...
T Consensus 160 ~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 160 VEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp TCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred CcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 21 1 11222223 588999999999999987654
No 83
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.18 E-value=0.0019 Score=57.78 Aligned_cols=84 Identities=20% Similarity=0.131 Sum_probs=51.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhh-----------cCC-CCCCChHHH
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVA-----------MGI-VDHNDLNLL 292 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~-----------~~~-~~~~~~~~l 292 (475)
.++.|+|++|+|||||+..++. . .-..++|++....++...+.. +...++ ... ....+....
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~-~----~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL-L----SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRRV 94 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH-H----HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH-H----cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHHH
Confidence 5899999999999999999987 1 123577887766555554432 322221 111 111222334
Q ss_pred HHHHHHHhCCceEEEEEECCCC
Q 046770 293 QWKLKKQLFGKRFLLVLDDVWN 314 (475)
Q Consensus 293 ~~~l~~~l~~kr~LlVlDdv~~ 314 (475)
...++..+..+.-+||||.+..
T Consensus 95 ~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 95 IGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHhhcCCCEEEEcCcHH
Confidence 4455555544577999999854
No 84
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.96 E-value=0.011 Score=56.77 Aligned_cols=157 Identities=11% Similarity=-0.078 Sum_probs=96.7
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHH-HhCC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKK-QLFG 302 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~-~l~~ 302 (475)
.++..++|+.|.||++.+..+.+... ...|+....+.+....++.+ +.+.+.. -+.+
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~---------------------l~~~~~~~plf~ 75 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTDWNA---------------------IFSLCQAMSLFA 75 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCCHHH---------------------HHHHHHHHHHCC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCCHHH---------------------HHHHhcCcCCcc
Confidence 46889999999999999988876321 12343211122222233332 2222221 1245
Q ss_pred ceEEEEEECCCC-CChhhHhHhhCcCCCCCCCcEEEEecCC-------hHHHHh-cCCCceeeCCCCCHHHHHHHHhhcc
Q 046770 303 KRFLLVLDDVWN-ENYNDWIDLSRPFQDGAPGSKIIITTRN-------ADAALI-MGTVQAYPLKGLSNDDCMCLFTQHS 373 (475)
Q Consensus 303 kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTtR~-------~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~ 373 (475)
++-++|+|+++. .+...++.+...+..-..++.+|+++.. ..+... ......++..+++.++....+.+.+
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~ 155 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARA 155 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHH
Confidence 667889999876 5555677777766654457777766543 233332 3445778999999999988887765
Q ss_pred cCCCCCCCCchHHHHHHHHHHhcCCchHHHHHH
Q 046770 374 LETRDFSMHQPLKEIGAKIVIKCNGLPLAAKAL 406 (475)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 406 (475)
-..+- .-..+.+..|++.++|....+...
T Consensus 156 ~~~g~----~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 156 KQLNL----ELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHTTC----EECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHcCC----CCCHHHHHHHHHHhchHHHHHHHH
Confidence 32221 122466778999999998877654
No 85
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.95 E-value=0.0024 Score=62.50 Aligned_cols=23 Identities=39% Similarity=0.491 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..+.++|++|+|||++|+.+++.
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999873
No 86
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.83 E-value=0.01 Score=60.07 Aligned_cols=177 Identities=13% Similarity=0.111 Sum_probs=90.4
Q ss_pred ccccccchhHHHHHHH---HhcCCCCCC-CCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHH
Q 046770 195 AKVYGRSKEREEIVEL---LLKEDGTSH-NNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIR 270 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~---L~~~~~~~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 270 (475)
.+++|.+..+.++.+. +.....-.. ...-.+-+.|+|++|+||||||+.++... .. ..+.++.+.-..
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~--~~---~~i~i~g~~~~~--- 102 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--RV---PFITASGSDFVE--- 102 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT--TC---CEEEEEGGGGTS---
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CC---CEEEEehhHHHH---
Confidence 4688988766665554 322100000 00112238899999999999999999743 21 223333322111
Q ss_pred HHHHHHHHhhcCCCCCCChHHHHHHHHHHhC----CceEEEEEECCCCCC----------hhh----HhHhhCcCCC--C
Q 046770 271 VTKSILRSVAMGIVDHNDLNLLQWKLKKQLF----GKRFLLVLDDVWNEN----------YND----WIDLSRPFQD--G 330 (475)
Q Consensus 271 ~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~----~kr~LlVlDdv~~~~----------~~~----~~~l~~~l~~--~ 330 (475)
. ........+...++ ..+.++++|++.... ... ...++..+.. .
T Consensus 103 -----------~-----~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~ 166 (499)
T 2dhr_A 103 -----------M-----FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 166 (499)
T ss_dssp -----------S-----CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS
T ss_pred -----------h-----hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc
Confidence 0 00111223333332 235799999994211 111 2233333321 1
Q ss_pred CCCcEEEEecCChHHHH--hcC---CCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCch
Q 046770 331 APGSKIIITTRNADAAL--IMG---TVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLP 400 (475)
Q Consensus 331 ~~gs~ilvTtR~~~v~~--~~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P 400 (475)
..+..++.||..++... ... -...+.+...+.++-.+++..++-... ...... ...|+..+.|+.
T Consensus 167 ~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~-l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 167 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP-LAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp SCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSC-CCCSST----THHHHTTSCSCC
T ss_pred CccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCC-CChHHH----HHHHHHhcCCCC
Confidence 23456666777665421 111 224678888888888888876653211 111112 234777888876
No 87
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.79 E-value=0.005 Score=66.40 Aligned_cols=158 Identities=12% Similarity=0.080 Sum_probs=81.7
Q ss_pred ccccccchhHHHHHHHHhcC---CC--CCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHH
Q 046770 195 AKVYGRSKEREEIVELLLKE---DG--TSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDII 269 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~---~~--~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 269 (475)
.+++|.+..+++|.+++... .. ..-.-.....|.|+|++|+||||||+.+++. ....| +.++...
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~~----- 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE----- 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHHH-----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEchH-----
Confidence 46899999888888876420 00 0000022346899999999999999999874 22222 3333211
Q ss_pred HHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCC-------hh----hHhHhh---CcCCCCCCCcE
Q 046770 270 RVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNEN-------YN----DWIDLS---RPFQDGAPGSK 335 (475)
Q Consensus 270 ~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~-------~~----~~~~l~---~~l~~~~~gs~ 335 (475)
+.... .......+...+.......+.++++|++.... .. ....+. ..+.. ..+..
T Consensus 274 ---------l~~~~-~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~-~~~v~ 342 (806)
T 1ypw_A 274 ---------IMSKL-AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ-RAHVI 342 (806)
T ss_dssp ---------HSSSS-TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCT-TSCCE
T ss_pred ---------hhhhh-hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcc-cccEE
Confidence 10100 00011112222333333457899999983211 00 111122 22221 23456
Q ss_pred EEEecCChH-HHHhcC----CCceeeCCCCCHHHHHHHHhhcc
Q 046770 336 IIITTRNAD-AALIMG----TVQAYPLKGLSNDDCMCLFTQHS 373 (475)
Q Consensus 336 ilvTtR~~~-v~~~~~----~~~~~~l~~L~~~~~~~lf~~~~ 373 (475)
+|.||.... +...+. -...+.+...+.++-.+++...+
T Consensus 343 vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred EecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 666666532 111111 12456788888888888888665
No 88
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.74 E-value=0.0041 Score=60.03 Aligned_cols=83 Identities=19% Similarity=0.212 Sum_probs=54.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCC-----CCCCChHHHHHHHHHH
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGI-----VDHNDLNLLQWKLKKQ 299 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~-----~~~~~~~~l~~~l~~~ 299 (475)
+++.|.|++|+|||||+.+++..... .=..++|++....++.. ..+.++... ....+.++....+...
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~--~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l 134 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQK--MGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDEL 134 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHHH
Confidence 79999999999999999999874321 11346788877777654 344444322 1244556666666655
Q ss_pred hC-CceEEEEEECCCC
Q 046770 300 LF-GKRFLLVLDDVWN 314 (475)
Q Consensus 300 l~-~kr~LlVlDdv~~ 314 (475)
+. .+.-++|+|.+..
T Consensus 135 ~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 135 VRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHTSCCSEEEEECTTT
T ss_pred hhhcCCCeEEehHhhh
Confidence 53 4556999999843
No 89
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.70 E-value=0.0071 Score=56.33 Aligned_cols=126 Identities=15% Similarity=0.066 Sum_probs=65.2
Q ss_pred EEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHH-HHHhCCceE
Q 046770 227 VSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKL-KKQLFGKRF 305 (475)
Q Consensus 227 v~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l-~~~l~~kr~ 305 (475)
+.|+|++|+||||||+.++..... ..+.+....-.+.. ..........+ +..-...+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~----------------~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMY----------------VGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSST----------------THHHHHHHHHHHHHHHHTCSE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhh----------------hhHHHHHHHHHHHHHHhcCCC
Confidence 899999999999999999874221 23344332211100 00000111111 111124578
Q ss_pred EEEEECCCCCCh-----------hhHhHhhCcCCCC--CCCcEEEEecCChHHHH--hc---CCCceeeCCCCCHHHHHH
Q 046770 306 LLVLDDVWNENY-----------NDWIDLSRPFQDG--APGSKIIITTRNADAAL--IM---GTVQAYPLKGLSNDDCMC 367 (475)
Q Consensus 306 LlVlDdv~~~~~-----------~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~--~~---~~~~~~~l~~L~~~~~~~ 367 (475)
++++|++..... .....+...+..+ ....-++.+|..+++.. .. .-...+.+...+.++-.+
T Consensus 106 i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~ 185 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLA 185 (274)
T ss_dssp EEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHH
T ss_pred eEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHH
Confidence 999999953210 0112222222211 22345566676654321 11 123567788888888888
Q ss_pred HHhhcc
Q 046770 368 LFTQHS 373 (475)
Q Consensus 368 lf~~~~ 373 (475)
+|....
T Consensus 186 il~~~~ 191 (274)
T 2x8a_A 186 ILKTIT 191 (274)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 888665
No 90
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.60 E-value=0.0062 Score=59.15 Aligned_cols=82 Identities=18% Similarity=0.149 Sum_probs=54.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCC-----CCCCChHHHHHHHHHH
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGI-----VDHNDLNLLQWKLKKQ 299 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~-----~~~~~~~~l~~~l~~~ 299 (475)
.++.|.|.+|+||||||.+++.... ..-..++|++....++.. ..+.++... ....+.+++...+...
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~--~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l 147 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQ--KAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMELL 147 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHH--HCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHHH
Confidence 5888999999999999998876432 122368899988877654 233443321 1234566666667666
Q ss_pred hC-CceEEEEEECCC
Q 046770 300 LF-GKRFLLVLDDVW 313 (475)
Q Consensus 300 l~-~kr~LlVlDdv~ 313 (475)
.. +..-+||+|.+.
T Consensus 148 ~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 148 VRSGAIDVVVVDSVA 162 (366)
T ss_dssp HTTTCCSEEEEECTT
T ss_pred HhcCCCCEEEEeChH
Confidence 64 345599999984
No 91
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.60 E-value=0.0079 Score=58.01 Aligned_cols=89 Identities=15% Similarity=0.124 Sum_probs=54.4
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcCccccc----CcCeEEEEEecCCCCHHHHHHHHHHHhhcCC------------CCCC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYNDSRVQC----HFDLKAWTYVSQDFDIIRVTKSILRSVAMGI------------VDHN 287 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~------------~~~~ 287 (475)
-.++.|+|++|+||||||.+++....... .-..++|++....++...+.. ++..++... ....
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~~e 200 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYTSE 200 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCCHH
Confidence 36899999999999999999876422211 124688999888777766543 334433211 1111
Q ss_pred ChHHHHHHHHHHhC---CceEEEEEECCC
Q 046770 288 DLNLLQWKLKKQLF---GKRFLLVLDDVW 313 (475)
Q Consensus 288 ~~~~l~~~l~~~l~---~kr~LlVlDdv~ 313 (475)
....+...+...+. .+.-+||+|.+.
T Consensus 201 ~~~~ll~~l~~~i~~~~~~~~lvVIDsl~ 229 (343)
T 1v5w_A 201 HQMELLDYVAAKFHEEAGIFKLLIIDSIM 229 (343)
T ss_dssp HHHHHHHHHHHHHHHSCSSEEEEEEETSG
T ss_pred HHHHHHHHHHHHHHhcCCCccEEEEechH
Confidence 22233334444443 456699999983
No 92
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.57 E-value=0.006 Score=58.90 Aligned_cols=83 Identities=17% Similarity=0.141 Sum_probs=53.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCC-----CCCCChHHHHHHHHHH
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGI-----VDHNDLNLLQWKLKKQ 299 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~-----~~~~~~~~l~~~l~~~ 299 (475)
+++.|.|++|+||||||.+++.... ..=..++|++....++.. ..+.++... ....+.++....+...
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~--~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l 134 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQ--AAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADML 134 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHH
Confidence 6899999999999999999876422 112357888888777643 233343221 1233456665556555
Q ss_pred hC-CceEEEEEECCCC
Q 046770 300 LF-GKRFLLVLDDVWN 314 (475)
Q Consensus 300 l~-~kr~LlVlDdv~~ 314 (475)
.. .+.-+||+|.+..
T Consensus 135 ~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 135 VRSGALDIIVIDSVAA 150 (349)
T ss_dssp HTTTCCSEEEEECGGG
T ss_pred HhcCCCCEEEEcChHh
Confidence 53 3466999999843
No 93
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.51 E-value=0.0051 Score=55.83 Aligned_cols=88 Identities=11% Similarity=0.131 Sum_probs=51.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCccccc----CcCeEEEEEecCCCCHHHHHHHHHHHhhcCC---------CCCCChHH
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQC----HFDLKAWTYVSQDFDIIRVTKSILRSVAMGI---------VDHNDLNL 291 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~---------~~~~~~~~ 291 (475)
.++.|+|++|+|||||+..++....... .-..++|++....++...+. .++..++... ....+...
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~ 103 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTDH 103 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHHH
Confidence 5899999999999999999876321111 12467888877755554432 3333333211 01222222
Q ss_pred H---HHHHHHHhC-CceEEEEEECCC
Q 046770 292 L---QWKLKKQLF-GKRFLLVLDDVW 313 (475)
Q Consensus 292 l---~~~l~~~l~-~kr~LlVlDdv~ 313 (475)
. ...+...+. .+.-+||||++.
T Consensus 104 ~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 104 QTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHhcCCceEEEEeCch
Confidence 2 223444443 467799999984
No 94
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.48 E-value=0.0086 Score=56.40 Aligned_cols=84 Identities=13% Similarity=0.086 Sum_probs=54.4
Q ss_pred EEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCC-----CCCChHHH-HHHHHHH
Q 046770 226 VVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIV-----DHNDLNLL-QWKLKKQ 299 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~-----~~~~~~~l-~~~l~~~ 299 (475)
++.|.|++|+|||||+.+++........=..++|++..+.++.. .++.++.... ...+.++. ...+...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 68999999999999998887643211112467899988888754 2555554321 23445554 4433333
Q ss_pred --h-CCceEEEEEECCCC
Q 046770 300 --L-FGKRFLLVLDDVWN 314 (475)
Q Consensus 300 --l-~~kr~LlVlDdv~~ 314 (475)
+ .++.-|||+|-+..
T Consensus 105 ~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HTCCTTCCEEEEEECSTT
T ss_pred HHhhccCceEEEEecccc
Confidence 3 45678999999854
No 95
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.48 E-value=0.018 Score=53.50 Aligned_cols=179 Identities=12% Similarity=0.060 Sum_probs=85.0
Q ss_pred ccccccchhHHHHHHHHhcCCC------CCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCH
Q 046770 195 AKVYGRSKEREEIVELLLKEDG------TSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDI 268 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~------~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~ 268 (475)
.+++|.+..+.++.+....-.. -+- .-.+-+.|+|++|+|||||++.++... . ...+.+...
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~--~~~~gvll~Gp~GtGKTtl~~~i~~~~--~---~~~i~~~~~----- 107 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGA--RIPKGVLLVGPPGVGKTHLARAVAGEA--R---VPFITASGS----- 107 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTC--CCCCEEEEECCTTSSHHHHHHHHHHHT--T---CCEEEEEHH-----
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCC--CCCCeEEEECCCcChHHHHHHHHHHHc--C---CCEEEecHH-----
Confidence 4678877666555544321000 000 001228899999999999999998743 2 122233221
Q ss_pred HHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCC----------Chhh----HhHhhCcCCCCC--C
Q 046770 269 IRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNE----------NYND----WIDLSRPFQDGA--P 332 (475)
Q Consensus 269 ~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~----------~~~~----~~~l~~~l~~~~--~ 332 (475)
.+ .... .......+...++..-...+.++++||+... .... ...+...+..+. .
T Consensus 108 -~~----~~~~-----~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~ 177 (278)
T 1iy2_A 108 -DF----VEMF-----VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 177 (278)
T ss_dssp -HH----HHST-----TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTC
T ss_pred -HH----HHHH-----hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCC
Confidence 11 1000 0000011112222222345689999998310 0011 122322332221 2
Q ss_pred CcEEEEecCChHHHH---h--cCCCceeeCCCCCHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCch
Q 046770 333 GSKIIITTRNADAAL---I--MGTVQAYPLKGLSNDDCMCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLP 400 (475)
Q Consensus 333 gs~ilvTtR~~~v~~---~--~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P 400 (475)
...++.||..+.... . ..-...+.+...+.++-.+++..++-.. ....... ...|+..+.|..
T Consensus 178 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~-~~~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 178 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLAEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp CEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS-CBCTTCC----HHHHHHTCTTCC
T ss_pred CEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccC-CCCcccC----HHHHHHHcCCCC
Confidence 234455666543311 1 1233568888888888888887654221 1111112 234777777765
No 96
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.45 E-value=0.0054 Score=58.60 Aligned_cols=87 Identities=16% Similarity=0.177 Sum_probs=54.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCccccc---------Cc-----CeEEEEEecCCCCHHHHHHHHHHHhhcCC-------
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQC---------HF-----DLKAWTYVSQDFDIIRVTKSILRSVAMGI------- 283 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~---------~F-----~~~~wv~v~~~~~~~~~l~~il~~l~~~~------- 283 (475)
.++.|.|.+|+|||+||.+++.+..... .. ..++|++....++..++.. ++..++...
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l 177 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLDNT 177 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHHTE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhcCE
Confidence 6899999999999999999876421111 11 4678999888877766653 344443221
Q ss_pred --CCCCChH---HHHHHHHHHhC--CceEEEEEECC
Q 046770 284 --VDHNDLN---LLQWKLKKQLF--GKRFLLVLDDV 312 (475)
Q Consensus 284 --~~~~~~~---~l~~~l~~~l~--~kr~LlVlDdv 312 (475)
....+.+ .+...+...+. .+.-+||+|.+
T Consensus 178 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 178 FVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp EEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 1122333 23344555553 45669999998
No 97
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.44 E-value=0.0079 Score=57.49 Aligned_cols=88 Identities=16% Similarity=0.215 Sum_probs=54.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccC----cCeEEEEEecCCCCHHHHHHHHHHHhhcCC---------CCCCChH-
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCH----FDLKAWTYVSQDFDIIRVTKSILRSVAMGI---------VDHNDLN- 290 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~v~~~~~~~~~l~~il~~l~~~~---------~~~~~~~- 290 (475)
.++.|+|++|+||||||.+++........ -..++|++....++..++.. ++..++... ....+.+
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~~~ 186 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINTDH 186 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCHHH
Confidence 58999999999999999998764211110 24678999888877666543 344443221 1122223
Q ss_pred --HHHHHHHHHhC--CceEEEEEECCC
Q 046770 291 --LLQWKLKKQLF--GKRFLLVLDDVW 313 (475)
Q Consensus 291 --~l~~~l~~~l~--~kr~LlVlDdv~ 313 (475)
.+...+...+. .+.-+||+|.+.
T Consensus 187 ~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 187 QIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 23344555553 456799999983
No 98
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.41 E-value=0.0039 Score=56.07 Aligned_cols=114 Identities=14% Similarity=-0.002 Sum_probs=59.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCC--------------------
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIV-------------------- 284 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~-------------------- 284 (475)
.++.|+|++|+|||||+..++...... -..+.|++... ....+...+. .++....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCce
Confidence 589999999999999999988532211 12355555433 3334333322 3221100
Q ss_pred ---CCCChHHHHHHHHHHh---CCceEEEEEECCCCC---ChhhHhHhhCcCCC--CCCCcEEEEecCCh
Q 046770 285 ---DHNDLNLLQWKLKKQL---FGKRFLLVLDDVWNE---NYNDWIDLSRPFQD--GAPGSKIIITTRNA 343 (475)
Q Consensus 285 ---~~~~~~~l~~~l~~~l---~~kr~LlVlDdv~~~---~~~~~~~l~~~l~~--~~~gs~ilvTtR~~ 343 (475)
...+..++...+...+ .-+..+||||..... +......+...+.. ...|..||++|...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 1114445555554444 222349999998421 22222333222221 12477888888865
No 99
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.37 E-value=0.0011 Score=59.69 Aligned_cols=110 Identities=12% Similarity=-0.039 Sum_probs=57.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCC--CCCChHHHHHHHHHHhCC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIV--DHNDLNLLQWKLKKQLFG 302 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~--~~~~~~~l~~~l~~~l~~ 302 (475)
.++.|+|..|+||||++..+.... ..+-..++.+....... ....++..++.... .......+...+.+.+.+
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~--~~~g~kVli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~ 87 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRL--EYADVKYLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFN 87 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH--HHTTCCEEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHHHhhC
Confidence 688999999999999998877632 22222233332222111 11122222222111 112234455555555544
Q ss_pred ceE-EEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCC
Q 046770 303 KRF-LLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRN 342 (475)
Q Consensus 303 kr~-LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 342 (475)
.++ +||+|.+...+.+..+.+ ..+.+ .|..||+|.+.
T Consensus 88 ~~~dvViIDEaQ~l~~~~ve~l-~~L~~--~gi~Vil~Gl~ 125 (223)
T 2b8t_A 88 DETKVIGIDEVQFFDDRICEVA-NILAE--NGFVVIISGLD 125 (223)
T ss_dssp TTCCEEEECSGGGSCTHHHHHH-HHHHH--TTCEEEEECCS
T ss_pred CCCCEEEEecCccCcHHHHHHH-HHHHh--CCCeEEEEecc
Confidence 444 999999965433333333 22222 27789999984
No 100
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.37 E-value=0.0037 Score=55.24 Aligned_cols=42 Identities=24% Similarity=0.217 Sum_probs=32.7
Q ss_pred cchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHc
Q 046770 200 RSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 200 R~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
|++.++.|.+.+..... ....+++|+|+.|+|||||++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~~-----~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKT-----AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSCC-----SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-----CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 55667788887765221 3457999999999999999999876
No 101
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.15 E-value=0.011 Score=57.05 Aligned_cols=82 Identities=22% Similarity=0.148 Sum_probs=52.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCC-----CCCChHHHHHHHHHH
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIV-----DHNDLNLLQWKLKKQ 299 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~-----~~~~~~~l~~~l~~~ 299 (475)
+++.|.|.+|+||||||.+++..... .=..++|++....++... ...++.... ...+.+++...+...
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~--~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~~l 136 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 136 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHHHH
Confidence 58999999999999999998764321 123588998887776432 333432211 223445555555444
Q ss_pred h-CCceEEEEEECCC
Q 046770 300 L-FGKRFLLVLDDVW 313 (475)
Q Consensus 300 l-~~kr~LlVlDdv~ 313 (475)
. ..+.-+||+|.+.
T Consensus 137 ~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 137 ARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHTCCSEEEEECGG
T ss_pred HhccCCCEEEEcCHH
Confidence 3 2445599999984
No 102
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.10 E-value=0.014 Score=54.99 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..++.|+|++|+||||++..++..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 369999999999999999988763
No 103
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.06 E-value=0.012 Score=51.31 Aligned_cols=51 Identities=20% Similarity=0.218 Sum_probs=30.5
Q ss_pred HHHHHHHhCCceE-EEEEECCCC---CChhhHhHhhCcCCCCCCCcEEEEecCCh
Q 046770 293 QWKLKKQLFGKRF-LLVLDDVWN---ENYNDWIDLSRPFQDGAPGSKIIITTRNA 343 (475)
Q Consensus 293 ~~~l~~~l~~kr~-LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 343 (475)
....++.+.+.+| |||||++-. -.....+++...+........||+|+|..
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 3345555655555 999999821 11123334444444444577999999984
No 104
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.05 E-value=0.017 Score=54.86 Aligned_cols=46 Identities=13% Similarity=0.158 Sum_probs=33.1
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHc
Q 046770 197 VYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 197 ~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+|-...+..+...+...... ....+++|.|+.|+|||||++.+..
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~----~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEP----KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCC----CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHhccCCC----CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 455556666666655552211 4567999999999999999998865
No 105
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.03 E-value=0.077 Score=47.76 Aligned_cols=23 Identities=26% Similarity=0.596 Sum_probs=20.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.+++|+|+.|+|||||.+.++.-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999864
No 106
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.83 E-value=0.0045 Score=52.90 Aligned_cols=20 Identities=45% Similarity=0.743 Sum_probs=18.7
Q ss_pred EEEEEEccCCCcHHHHHHHH
Q 046770 225 SVVSIIGMGGLGKTTLAQLV 244 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v 244 (475)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 107
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.82 E-value=0.0042 Score=53.48 Aligned_cols=22 Identities=14% Similarity=0.297 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+|.|+|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 108
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.81 E-value=0.0043 Score=52.94 Aligned_cols=22 Identities=18% Similarity=0.155 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+|.|.|++|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 109
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.74 E-value=0.0085 Score=53.19 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.-.+|+|+|+.|+|||||++.+..-
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4479999999999999999998763
No 110
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.71 E-value=0.0059 Score=53.23 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=21.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.+++|+|++|+|||||++.+...
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 68999999999999999999874
No 111
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.67 E-value=0.0059 Score=52.52 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999986
No 112
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.64 E-value=0.012 Score=55.19 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=22.2
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHc
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
....+|.|.|++|+||||+|+.+..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999999986
No 113
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.64 E-value=0.018 Score=55.73 Aligned_cols=54 Identities=13% Similarity=-0.028 Sum_probs=34.3
Q ss_pred HHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccc-cCcCeEEEEEecCCC
Q 046770 205 EEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQ-CHFDLKAWTYVSQDF 266 (475)
Q Consensus 205 ~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv~v~~~~ 266 (475)
-++++.+..... -..++|+|++|+|||||++.+.+..... ..+. ++++-+.+..
T Consensus 162 iraID~~~pi~r-------GQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~ 216 (422)
T 3ice_A 162 ARVLDLASPIGR-------GQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERP 216 (422)
T ss_dssp HHHHHHHSCCBT-------TCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCH
T ss_pred ceeeeeeeeecC-------CcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCCh
Confidence 346676665322 1478999999999999999887632111 1222 3456677654
No 114
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.59 E-value=0.0058 Score=52.93 Aligned_cols=22 Identities=14% Similarity=0.480 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+++|+|+.|+|||||++.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999976
No 115
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.53 E-value=0.0066 Score=53.48 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+|.|+|++|+||||+++.+..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 116
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.52 E-value=0.084 Score=49.76 Aligned_cols=90 Identities=14% Similarity=0.078 Sum_probs=47.2
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHH--HHHHHHHHHhhcCC---CCCCChHH-HHHH
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDII--RVTKSILRSVAMGI---VDHNDLNL-LQWK 295 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~--~~l~~il~~l~~~~---~~~~~~~~-l~~~ 295 (475)
....++.|+|++|+||||++..++....... ..+.++.. +.+... +-+...++..+... ....+... ....
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g--~kV~lv~~-D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~a 178 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEG--KSVVLAAA-DTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDA 178 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEE-CTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcC--CEEEEEcc-ccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHH
Confidence 3457999999999999999999876432111 12333433 233221 22333344433221 11122222 2334
Q ss_pred HHHHhCCceEEEEEECCCC
Q 046770 296 LKKQLFGKRFLLVLDDVWN 314 (475)
Q Consensus 296 l~~~l~~kr~LlVlDdv~~ 314 (475)
+...+....-++|+|....
T Consensus 179 l~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 179 VAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHHTTCSEEEEEECCC
T ss_pred HHHHHhcCCCEEEEECCCc
Confidence 5554444455888897743
No 117
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.52 E-value=0.0064 Score=58.57 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=32.1
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..++|.+..+..+...+.. . ...-+.|+|++|+|||+||+.+.+.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~-~-------~~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVD-P-------GIGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHC-G-------GGCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhC-C-------CCceEEEECCCCccHHHHHHHHHHh
Confidence 3588988766555444433 1 1123889999999999999999874
No 118
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.49 E-value=0.0057 Score=52.35 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+|+|+|+.|+|||||++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 119
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.44 E-value=0.007 Score=52.44 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
+.|.|+|++|+||||+|+.+..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999999986
No 120
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.43 E-value=0.0097 Score=52.42 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=21.6
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
-.+|.|+|+.|+|||||++.+...
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 378999999999999999999873
No 121
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.40 E-value=0.06 Score=53.33 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.3
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHc
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
...+|.++|.+|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 468999999999999999988765
No 122
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.40 E-value=0.043 Score=53.82 Aligned_cols=87 Identities=16% Similarity=0.159 Sum_probs=49.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccc----cCcCeEEEEEecCCCCHHHHHHHHHHHhhcCC---------CCCCChHH
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQ----CHFDLKAWTYVSQDFDIIRVTKSILRSVAMGI---------VDHNDLNL 291 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~---------~~~~~~~~ 291 (475)
.++.|+|++|+|||||+..++-..... ..-..++|++....+....+ ..+.+.++... ....+...
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~~~ 257 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNADH 257 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCChHH
Confidence 589999999999999999765211111 12245888887776665543 23444443211 11122222
Q ss_pred ---HHHHHHHHh-CCceEEEEEECC
Q 046770 292 ---LQWKLKKQL-FGKRFLLVLDDV 312 (475)
Q Consensus 292 ---l~~~l~~~l-~~kr~LlVlDdv 312 (475)
....+...+ ..+.-+||+|.+
T Consensus 258 ~~~~l~~~~~~l~~~~~~llVIDs~ 282 (400)
T 3lda_A 258 QLRLLDAAAQMMSESRFSLIVVDSV 282 (400)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETG
T ss_pred HHHHHHHHHHHHHhcCCceEEecch
Confidence 222222332 245679999997
No 123
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.38 E-value=0.014 Score=53.50 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=22.4
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHc
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
....+|.|+|++|+||||+|+.+..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999999976
No 124
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.37 E-value=0.029 Score=54.10 Aligned_cols=46 Identities=20% Similarity=0.212 Sum_probs=31.4
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcCcccccCc---C-eEEEEEecCCCCHH
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYNDSRVQCHF---D-LKAWTYVSQDFDII 269 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F---~-~~~wv~v~~~~~~~ 269 (475)
-.++.|+|++|+|||||+..++......... . .++|++....+...
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~ 180 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE 180 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHH
Confidence 3799999999999999999987642111111 2 34888876655433
No 125
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.36 E-value=0.0085 Score=52.12 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.+|.|.|++|+||||+|+.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999873
No 126
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.35 E-value=0.0093 Score=51.93 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCcHHHHHHHHHc
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
..+|.|.|++|+||||+++.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 127
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.34 E-value=0.0072 Score=53.28 Aligned_cols=24 Identities=17% Similarity=0.466 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..+|.|.|+.|+||||+|+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999763
No 128
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.32 E-value=0.071 Score=50.57 Aligned_cols=50 Identities=16% Similarity=0.126 Sum_probs=35.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHH
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRS 278 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~ 278 (475)
.++.|.|.+|+||||||.+++.+..... ..++|++.. .+..++...++..
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 5899999999999999999876432222 467777655 4556666666554
No 129
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.30 E-value=0.0091 Score=52.59 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+++|+|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999999876
No 130
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.29 E-value=0.014 Score=54.84 Aligned_cols=81 Identities=15% Similarity=0.113 Sum_probs=44.4
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHcCccccc-CcCeEEEEEecCCCCHHHHHHHHHHHh-----hc--CCCCCCChHHHH
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYNDSRVQC-HFDLKAWTYVSQDFDIIRVTKSILRSV-----AM--GIVDHNDLNLLQ 293 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~~~wv~v~~~~~~~~~l~~il~~l-----~~--~~~~~~~~~~l~ 293 (475)
....+|+|+|+.|+||||||+.+........ .......|+...-+-.......+.... .. ..+...+...+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~ 108 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQ 108 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHH
Confidence 4567999999999999999998876332211 122344434444333333333332221 00 124455666666
Q ss_pred HHHHHHhCC
Q 046770 294 WKLKKQLFG 302 (475)
Q Consensus 294 ~~l~~~l~~ 302 (475)
+.+.....+
T Consensus 109 ~~l~~l~~g 117 (290)
T 1odf_A 109 EVLNTIFNN 117 (290)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHhhcc
Confidence 666666554
No 131
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.27 E-value=0.013 Score=50.20 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=21.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHHc
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
-.++.|+|+.|+||||+++.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999876
No 132
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.24 E-value=0.021 Score=57.38 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=20.0
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 046770 226 VVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.+.|.|.+|+||||++..+...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 8899999999999999988764
No 133
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.24 E-value=0.0096 Score=51.06 Aligned_cols=22 Identities=41% Similarity=0.679 Sum_probs=19.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+++|+|+.|+|||||++.++.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHcc
Confidence 6899999999999999997553
No 134
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.24 E-value=0.015 Score=52.00 Aligned_cols=39 Identities=23% Similarity=0.311 Sum_probs=28.7
Q ss_pred chhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 201 SKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 201 ~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
++..+.+...+.. .....|.|+|.+|+|||||+..+...
T Consensus 23 ~~~a~~~r~~~~~--------~~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 23 KRLADKNRKLLNK--------HGVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHHHH--------TTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--------CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3344555555544 45688999999999999999998864
No 135
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.24 E-value=0.0091 Score=50.86 Aligned_cols=25 Identities=36% Similarity=0.503 Sum_probs=20.9
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHc
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
....+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHHH
T ss_pred cccceEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999987
No 136
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.21 E-value=0.014 Score=56.79 Aligned_cols=52 Identities=23% Similarity=0.242 Sum_probs=34.9
Q ss_pred cccccchhHHHHHHHHhcC------CCC-CCCCCccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 196 KVYGRSKEREEIVELLLKE------DGT-SHNNNHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 196 ~~vGR~~e~~~l~~~L~~~------~~~-~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.++|.+..++.+...+... ... .........+.++|++|+|||++|+.+++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4688888888887777210 000 000012356889999999999999999874
No 137
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.21 E-value=0.03 Score=55.71 Aligned_cols=50 Identities=18% Similarity=0.239 Sum_probs=33.2
Q ss_pred EEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCC-HHHHHHHHH
Q 046770 226 VVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFD-IIRVTKSIL 276 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~~l~~il 276 (475)
.++|+|.+|+|||||++.+..+.... +-+.++++.+.+..+ ..+++..+.
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhh
Confidence 57899999999999999988753222 234556777766553 334444443
No 138
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.19 E-value=0.011 Score=52.33 Aligned_cols=24 Identities=42% Similarity=0.378 Sum_probs=21.5
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHc
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
...+++|+|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 139
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.19 E-value=0.0098 Score=51.64 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+|.|.|++|+||||+++.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 140
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.18 E-value=0.03 Score=59.82 Aligned_cols=159 Identities=15% Similarity=0.090 Sum_probs=75.8
Q ss_pred ccccccchhHHHHHHHHhcCCCC-----CCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHH
Q 046770 195 AKVYGRSKEREEIVELLLKEDGT-----SHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDII 269 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~-----~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 269 (475)
.++.|-+..+++|.+.+.-.-.. .......+-+.++|++|.|||.||+.+++.. ... ++.++.
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~--~~~-----f~~v~~----- 544 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC--QAN-----FISIKG----- 544 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT--TCE-----EEECCH-----
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh--CCc-----eEEecc-----
Confidence 45677777777776655321000 0001233557899999999999999999853 222 222321
Q ss_pred HHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEEEEEECCCCCC----------hh----hHhHhhCcCC--CCCCC
Q 046770 270 RVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFLLVLDDVWNEN----------YN----DWIDLSRPFQ--DGAPG 333 (475)
Q Consensus 270 ~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~----------~~----~~~~l~~~l~--~~~~g 333 (475)
.+++.. ........+.......-+..+++|+||++..-- .. ...+++..+. ....+
T Consensus 545 ---~~l~s~-----~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~ 616 (806)
T 3cf2_A 545 ---PELLTM-----WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 616 (806)
T ss_dssp ---HHHHTT-----TCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSS
T ss_pred ---chhhcc-----ccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCC
Confidence 112211 122233333333333335678999999984310 00 1222332222 12233
Q ss_pred cEEEEecCChHH---HHhc--CCCceeeCCCCCHHHHHHHHhhcc
Q 046770 334 SKIIITTRNADA---ALIM--GTVQAYPLKGLSNDDCMCLFTQHS 373 (475)
Q Consensus 334 s~ilvTtR~~~v---~~~~--~~~~~~~l~~L~~~~~~~lf~~~~ 373 (475)
.-||-||..++. +..- .-...+.+..-+.++-.++|+.+.
T Consensus 617 V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 617 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp EEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred EEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 345556654322 2211 123556676666666667776554
No 141
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.18 E-value=0.011 Score=52.13 Aligned_cols=22 Identities=41% Similarity=0.593 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+++|+|+.|+|||||++.+..
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999986
No 142
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.18 E-value=0.0085 Score=52.13 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 143
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.18 E-value=0.011 Score=52.61 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=21.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.+++|+|+.|+|||||++.+...
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 68999999999999999999874
No 144
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.16 E-value=0.012 Score=51.23 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=20.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 145
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.13 E-value=0.011 Score=54.35 Aligned_cols=23 Identities=26% Similarity=0.237 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.++.|.|++|+||||||+.++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999999763
No 146
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.12 E-value=0.013 Score=51.60 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.2
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHc
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
....+|+|.|+.|+||||+++.+.+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999986
No 147
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.12 E-value=0.012 Score=51.62 Aligned_cols=25 Identities=36% Similarity=0.511 Sum_probs=22.5
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHc
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+..+|+|+|+.|+||||+++.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999999987
No 148
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.10 E-value=0.0084 Score=52.22 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
+.|.|+|++|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999876
No 149
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.09 E-value=0.0091 Score=51.51 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.6
Q ss_pred cEEEEEEccCCCcHHHHHHHHHc
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.++|.|+|++|+||||+++.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 35788999999999999999986
No 150
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.09 E-value=0.14 Score=50.88 Aligned_cols=65 Identities=20% Similarity=0.280 Sum_probs=44.7
Q ss_pred HHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCC-HHHHHHHHHHH
Q 046770 206 EIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFD-IIRVTKSILRS 278 (475)
Q Consensus 206 ~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~~l~~il~~ 278 (475)
+.++.|.....+ .-++|.|..|+|||+|++.+.++. .+.+-+.++++-+.+... ..+++.++...
T Consensus 142 r~ID~l~pigkG-------Qr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYAKG-------GKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEETT-------CEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccccC-------CeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 467777663322 357899999999999999988742 123446678888887654 45566666654
No 151
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.07 E-value=0.012 Score=51.17 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 152
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.07 E-value=0.063 Score=51.31 Aligned_cols=49 Identities=18% Similarity=0.028 Sum_probs=33.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHH
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILR 277 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~ 277 (475)
.++.|.|.+|+||||||..++.+... .=..++|++.. .+..++...++.
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlE--ms~~ql~~Rlls 95 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLE--MSAEQLALRALS 95 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESS--SCHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCC--CCHHHHHHHHHH
Confidence 58899999999999999998775322 11345666553 445566666544
No 153
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.05 E-value=0.013 Score=50.76 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=19.6
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 046770 226 VVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.++|+|+.|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998764
No 154
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.04 E-value=0.014 Score=52.24 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=23.3
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.+.++|.|.|++|+||||.|+.+.+.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 56689999999999999999999873
No 155
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.03 E-value=0.015 Score=51.48 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=22.1
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
...+|+|+|++|+|||||++.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999874
No 156
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.01 E-value=0.012 Score=51.93 Aligned_cols=23 Identities=26% Similarity=0.599 Sum_probs=20.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.+++|+|+.|+|||||++.+...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999764
No 157
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.01 E-value=0.014 Score=51.55 Aligned_cols=22 Identities=41% Similarity=0.537 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 158
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.01 E-value=0.012 Score=51.33 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+|.|.|++|+||||+|+.+.+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 159
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.00 E-value=0.013 Score=50.86 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=21.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHHc
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
...|.|+|+.|+||||+++.+..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 160
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.99 E-value=0.012 Score=52.82 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+|+|+|+.|+||||+++.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999876
No 161
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.98 E-value=0.012 Score=51.65 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=20.0
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 046770 226 VVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.|+|.|+.|+||||+++.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5889999999999999999873
No 162
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.98 E-value=0.0097 Score=51.09 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=20.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
..|.|.|++|+||||+|+.+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3588999999999999999987
No 163
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.97 E-value=0.0096 Score=52.65 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=21.2
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..+|.|+|++|+|||||++.+...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 368899999999999999999863
No 164
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.93 E-value=0.012 Score=51.80 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=20.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999986
No 165
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.91 E-value=0.011 Score=52.07 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=20.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999875
No 166
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.90 E-value=0.017 Score=51.56 Aligned_cols=41 Identities=27% Similarity=0.254 Sum_probs=30.1
Q ss_pred ccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 199 GRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 199 GR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
+..+..+.+...+.. ...++|.|+|.+|+|||||+..+...
T Consensus 13 ~~~~~~~~~~~~~~~--------~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 13 ENKRLAEKNREALRE--------SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHH--------HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcc--------cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 334445555555543 45689999999999999999998764
No 167
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.89 E-value=0.0096 Score=51.52 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=19.6
Q ss_pred EEEEEccCCCcHHHHHHHHHc
Q 046770 226 VVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~ 246 (475)
+|.|+|++|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 168
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.89 E-value=0.015 Score=50.39 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+|.|.|++|+||||+++.+.+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999986
No 169
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.86 E-value=0.015 Score=53.62 Aligned_cols=23 Identities=22% Similarity=0.535 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCcHHHHHHHHHc
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 170
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.82 E-value=0.12 Score=51.01 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=21.8
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
...++.++|++|+||||++..++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999888753
No 171
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.80 E-value=0.019 Score=49.84 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCcHHHHHHHHHc
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
..+|.|.|++|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 172
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.79 E-value=0.012 Score=50.30 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=20.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999987
No 173
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.77 E-value=0.018 Score=50.44 Aligned_cols=25 Identities=32% Similarity=0.603 Sum_probs=22.7
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHc
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
....+|+|+|+.|+||||+++.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999987
No 174
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.77 E-value=0.22 Score=49.37 Aligned_cols=25 Identities=32% Similarity=0.340 Sum_probs=21.8
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHc
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
...++|.++|.+|+||||++..++.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999988875
No 175
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.77 E-value=0.016 Score=51.21 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=21.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.+|.|.|++|+||||+|+.+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999874
No 176
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.76 E-value=0.014 Score=51.07 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+|.|.|++|+||||+|+.+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 177
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.75 E-value=0.016 Score=49.58 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.8
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..+++.|+|+.|+|||||+..+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999998874
No 178
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.75 E-value=0.019 Score=49.75 Aligned_cols=25 Identities=36% Similarity=0.364 Sum_probs=21.9
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
...+|.|.|++|+||||+++.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999874
No 179
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.75 E-value=0.016 Score=52.87 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCcHHHHHHHHHc
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
..+++|+|+.|+|||||++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999984
No 180
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.74 E-value=0.015 Score=51.04 Aligned_cols=23 Identities=17% Similarity=0.498 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHHc
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
-++++|+|+.|+|||||++.+..
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHh
Confidence 36899999999999999999986
No 181
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.70 E-value=0.019 Score=50.51 Aligned_cols=23 Identities=30% Similarity=0.296 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHHc
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
..+|.|+|++|+||||+|+.+..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 182
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.69 E-value=0.017 Score=51.14 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+++|+|+.|+|||||++.+..
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999876
No 183
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.69 E-value=0.018 Score=52.81 Aligned_cols=25 Identities=12% Similarity=0.224 Sum_probs=21.8
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHc
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
....+|+|.|+.|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999876
No 184
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.67 E-value=0.017 Score=49.04 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=19.5
Q ss_pred EEEEEccCCCcHHHHHHHHHc
Q 046770 226 VVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 185
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.67 E-value=0.016 Score=50.32 Aligned_cols=21 Identities=38% Similarity=0.691 Sum_probs=19.7
Q ss_pred EEEEEccCCCcHHHHHHHHHc
Q 046770 226 VVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~ 246 (475)
+|+|.|+.|+||||+++.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 186
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.63 E-value=0.12 Score=51.63 Aligned_cols=98 Identities=19% Similarity=0.264 Sum_probs=60.2
Q ss_pred HHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCC-HHHHHHHHHHHhhcC---
Q 046770 207 IVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFD-IIRVTKSILRSVAMG--- 282 (475)
Q Consensus 207 l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~~l~~il~~l~~~--- 282 (475)
.++.|.....+ .-++|.|..|+|||+|+..+.++. .+.+-+.++++-+.+... ..+++.++...-...
T Consensus 155 vID~l~pigkG-------qr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~ 226 (498)
T 1fx0_B 155 VVNLLAPYRRG-------GKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQN 226 (498)
T ss_dssp THHHHSCCCTT-------CCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSST
T ss_pred EeeeecccccC-------CeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhccccccccc
Confidence 57777663322 247899999999999999988742 223457788888887764 455666665431111
Q ss_pred ----CC-----CCCC-------hHHHHHHHHHHh---CCceEEEEEECC
Q 046770 283 ----IV-----DHND-------LNLLQWKLKKQL---FGKRFLLVLDDV 312 (475)
Q Consensus 283 ----~~-----~~~~-------~~~l~~~l~~~l---~~kr~LlVlDdv 312 (475)
.. ..++ .....-.+.+++ +++.+||++||+
T Consensus 227 l~~~rtvvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsi 275 (498)
T 1fx0_B 227 IAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNI 275 (498)
T ss_dssp TCCCCEEEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECS
T ss_pred ccccceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 00 1111 111222344555 468999999998
No 187
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.62 E-value=0.11 Score=52.73 Aligned_cols=50 Identities=6% Similarity=0.054 Sum_probs=33.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHH
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILR 277 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~ 277 (475)
.++.|.|.+|+||||||.+++.+.... +=..++|++... +..++...++.
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~ 292 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIG 292 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHH
T ss_pred eEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHH
Confidence 588999999999999999987743222 113567776644 44555555543
No 188
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.56 E-value=0.022 Score=51.88 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHHc
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
-.+|+|.|+.|+|||||++.+..
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999876
No 189
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.55 E-value=0.012 Score=50.83 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=16.9
Q ss_pred cEEEEEEccCCCcHHHHHHHHHc
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999976
No 190
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.52 E-value=0.099 Score=52.32 Aligned_cols=49 Identities=12% Similarity=0.135 Sum_probs=32.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHH
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSIL 276 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il 276 (475)
.++.|.|.+|+|||||+..++.+..... =..++|++... +...+...++
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSS--CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCC--CHHHHHHHHH
Confidence 5899999999999999999887532221 12466766543 3345554443
No 191
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.52 E-value=0.022 Score=53.95 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=21.6
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHc
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
...+++|+|+.|+|||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 447999999999999999999876
No 192
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.52 E-value=0.023 Score=48.01 Aligned_cols=22 Identities=36% Similarity=0.375 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+++|+|+.|.|||||++.++.
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 193
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.49 E-value=0.037 Score=53.01 Aligned_cols=42 Identities=26% Similarity=0.359 Sum_probs=28.6
Q ss_pred chhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHc
Q 046770 201 SKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 201 ~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
+.-.+.+.+.+...-.. +....+.|+|++|+||||+++.++.
T Consensus 5 ~~L~~~il~~l~~~i~~----g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIED----NYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp HHHHHHHHHHHHHTTTT----CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc----CCeeEEEEECCCCCcHHHHHHHHHH
Confidence 34455565555421111 3456789999999999999998876
No 194
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.47 E-value=0.02 Score=50.75 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=21.4
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..+|.|.|+.|+||||+++.+.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999873
No 195
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.45 E-value=0.02 Score=49.97 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.0
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 046770 226 VVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
+|+|.|+.|+||||+++.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 196
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.43 E-value=0.017 Score=51.75 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+++|+|+.|+|||||++.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999876
No 197
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.41 E-value=0.24 Score=47.85 Aligned_cols=53 Identities=17% Similarity=0.193 Sum_probs=34.1
Q ss_pred HHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcC-eEEEEEecCC
Q 046770 205 EEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFD-LKAWTYVSQD 265 (475)
Q Consensus 205 ~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~v~~~ 265 (475)
-++++.|.....+ .-++|+|.+|+|||+|+..+.+.... .+-+ .++++-+.+.
T Consensus 163 iraID~l~PigrG-------QR~lIfg~~g~GKT~Ll~~Ia~~i~~-~~~dv~~V~~lIGER 216 (427)
T 3l0o_A 163 TRLIDLFAPIGKG-------QRGMIVAPPKAGKTTILKEIANGIAE-NHPDTIRIILLIDER 216 (427)
T ss_dssp HHHHHHHSCCBTT-------CEEEEEECTTCCHHHHHHHHHHHHHH-HCTTSEEEEEECSCC
T ss_pred chhhhhcccccCC-------ceEEEecCCCCChhHHHHHHHHHHhh-cCCCeEEEEEEeccC
Confidence 4677888763322 35789999999999999988874221 1222 2345666554
No 198
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.40 E-value=0.021 Score=51.15 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.+++|+|+.|+|||||.+.+...
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999998763
No 199
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.38 E-value=0.02 Score=50.63 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=21.5
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..+|.|.|+.|+||||+++.+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999873
No 200
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.37 E-value=0.021 Score=50.80 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=19.0
Q ss_pred EEEEEccCCCcHHHHHHHHHc
Q 046770 226 VVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 201
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.37 E-value=0.033 Score=48.99 Aligned_cols=37 Identities=11% Similarity=0.072 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 204 REEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 204 ~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
+..+..++... ++-..+.|+|++|+||||+|..+++.
T Consensus 45 ~~~l~~~~~~i-------Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKGT-------PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHTC-------TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-------CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 45566666441 22346899999999999999888874
No 202
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.36 E-value=0.013 Score=52.07 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=19.9
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 046770 226 VVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
+|+|.|+.|+||||+++.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999998763
No 203
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.36 E-value=0.022 Score=52.22 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+|+|+|+.|+|||||++.+..
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999985
No 204
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.32 E-value=0.022 Score=50.91 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
..|.|.|++|+||||+|+.+..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 205
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.31 E-value=0.02 Score=51.40 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCcHHHHHHHHHc
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
...|.|.|++|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999986
No 206
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.31 E-value=0.02 Score=52.46 Aligned_cols=149 Identities=12% Similarity=0.088 Sum_probs=72.5
Q ss_pred EEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCceEE
Q 046770 227 VSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKRFL 306 (475)
Q Consensus 227 v~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~L 306 (475)
+.|+|++|+|||||++.++... .. ..+.++.. .+ .... .......+...++..-...+.+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~--~~---~~i~~~~~------~~----~~~~-----~~~~~~~i~~~~~~~~~~~~~i 111 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA--RV---PFITASGS------DF----VEMF-----VGVGAARVRDLFETAKRHAPCI 111 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT--TC---CEEEEEHH------HH----HHSC-----TTHHHHHHHHHHHHHTTSSSEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh--CC---CEEEeeHH------HH----HHHH-----hhHHHHHHHHHHHHHHhcCCeE
Confidence 8899999999999999999743 21 12222211 11 1000 0000111112222222345689
Q ss_pred EEEECCCCC----------Chhh----HhHhhCcCCCC--CCCcEEEEecCChHHHH--hc---CCCceeeCCCCCHHHH
Q 046770 307 LVLDDVWNE----------NYND----WIDLSRPFQDG--APGSKIIITTRNADAAL--IM---GTVQAYPLKGLSNDDC 365 (475)
Q Consensus 307 lVlDdv~~~----------~~~~----~~~l~~~l~~~--~~gs~ilvTtR~~~v~~--~~---~~~~~~~l~~L~~~~~ 365 (475)
+++||+... .... ...+...+..+ .....++.||..+.... .. .-...+.+...+.++-
T Consensus 112 ~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r 191 (254)
T 1ixz_A 112 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR 191 (254)
T ss_dssp EEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHH
T ss_pred EEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHH
Confidence 999998311 0011 12232222221 12334555666654321 11 1235678888888888
Q ss_pred HHHHhhcccCCCCCCCCchHHHHHHHHHHhcCCch
Q 046770 366 MCLFTQHSLETRDFSMHQPLKEIGAKIVIKCNGLP 400 (475)
Q Consensus 366 ~~lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P 400 (475)
.+++....-... ......+ ..|++.+.|.-
T Consensus 192 ~~il~~~~~~~~-~~~~~~~----~~la~~~~G~~ 221 (254)
T 1ixz_A 192 EQILRIHARGKP-LAEDVDL----ALLAKRTPGFV 221 (254)
T ss_dssp HHHHHHHHTTSC-BCTTCCH----HHHHHTCTTCC
T ss_pred HHHHHHHHcCCC-CCcccCH----HHHHHHcCCCC
Confidence 888876542211 1111122 34777777754
No 207
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.27 E-value=0.028 Score=52.45 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=21.8
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHc
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
....+|+|+|+.|+||||+|+.+..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999873
No 208
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.25 E-value=0.027 Score=53.48 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=21.1
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHc
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+.+||+|.|-||+||||.+-.+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHH
Confidence 3568999999999999999977754
No 209
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.23 E-value=0.023 Score=50.50 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=19.0
Q ss_pred EEEEEccCCCcHHHHHHHHHc
Q 046770 226 VVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 210
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.22 E-value=0.028 Score=48.36 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHHc
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
-.+|.|+|+.|+||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36889999999999999999977
No 211
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.20 E-value=0.024 Score=49.77 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=21.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.+|+|.|+.|+||||+++.+.+.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999874
No 212
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.19 E-value=0.027 Score=50.46 Aligned_cols=44 Identities=20% Similarity=0.257 Sum_probs=30.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCccc---cc-CcCeEEEEEecCCCCH
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRV---QC-HFDLKAWTYVSQDFDI 268 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~---~~-~F~~~~wv~v~~~~~~ 268 (475)
.+++|+|+.|+|||||++.++..... .. .-...+|+.....+..
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 68999999999999999999752111 11 1235777776554443
No 213
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.19 E-value=0.075 Score=61.96 Aligned_cols=83 Identities=23% Similarity=0.147 Sum_probs=54.5
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCC-----CCCCChHHHHHHHH
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGI-----VDHNDLNLLQWKLK 297 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~-----~~~~~~~~l~~~l~ 297 (475)
.-+++.|+|++|+|||+||.++.... ...=..++|+++...++... ++.++... ......+...+.++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea--~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 34689999999999999999987742 22223578888888777655 33443211 12233455555565
Q ss_pred HHh-CCceEEEEEECC
Q 046770 298 KQL-FGKRFLLVLDDV 312 (475)
Q Consensus 298 ~~l-~~kr~LlVlDdv 312 (475)
... +.+.-+||+|.+
T Consensus 1499 ~lvr~~~~~lVVIDsi 1514 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSV 1514 (2050)
T ss_dssp HHHHHTCCSEEEESCG
T ss_pred HHHhcCCCCEEEEcCh
Confidence 554 356779999998
No 214
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.18 E-value=0.028 Score=53.07 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.7
Q ss_pred cEEEEEEccCCCcHHHHHHHHHc
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
..+++|+|++|+|||||+..++.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 46999999999999999999875
No 215
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.14 E-value=0.026 Score=51.27 Aligned_cols=22 Identities=36% Similarity=0.421 Sum_probs=20.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+++|+|+.|+|||||++.++.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 5899999999999999998873
No 216
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.13 E-value=0.029 Score=51.08 Aligned_cols=24 Identities=21% Similarity=0.129 Sum_probs=21.4
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHc
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
...+|.|.|++|+||||+|+.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999976
No 217
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.12 E-value=0.18 Score=49.82 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.++.|+|++|+||||++..++..
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68899999999999999888753
No 218
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.12 E-value=0.056 Score=51.07 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.5
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHc
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
...+|+|+|+.|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 347999999999999999999876
No 219
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.09 E-value=0.031 Score=49.79 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+|+|.|+.|+||||+++.+..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999875
No 220
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.09 E-value=0.022 Score=51.00 Aligned_cols=23 Identities=30% Similarity=0.242 Sum_probs=20.7
Q ss_pred cEEEEEEccCCCcHHHHHHHHHc
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
...|.|.|++|+||||+++.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999987
No 221
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.05 E-value=0.018 Score=49.40 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.+++|+|..|+|||||++.+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998763
No 222
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.01 E-value=0.032 Score=49.44 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..+|.|.|+.|+||||+++.+...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999998773
No 223
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.99 E-value=0.11 Score=53.48 Aligned_cols=103 Identities=16% Similarity=0.094 Sum_probs=51.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHH-HHh---
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLK-KQL--- 300 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~-~~l--- 300 (475)
+++.|+|++|+||||++..+....... ...+.+......-.. .+-+.++.. ..+...+..... .+.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~---g~~Vl~~ApT~~Aa~----~L~e~~~~~---a~Tih~ll~~~~~~~~~~~ 274 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESL---GLEVGLCAPTGKAAR----RLGEVTGRT---ASTVHRLLGYGPQGFRHNH 274 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHH----HHHHHHTSC---EEEHHHHTTEETTEESCSS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEecCcHHHHH----HhHhhhccc---HHHHHHHHcCCcchhhhhh
Confidence 588899999999999998887632211 123334333321111 221221111 011110000000 000
Q ss_pred --CCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEec
Q 046770 301 --FGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITT 340 (475)
Q Consensus 301 --~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt 340 (475)
..+.-+||+|++...+...+..+...++ .+.++|+.-
T Consensus 275 ~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvG 313 (574)
T 3e1s_A 275 LEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVG 313 (574)
T ss_dssp SSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEE
T ss_pred cccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEe
Confidence 0012389999997666666777776665 456676654
No 224
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.97 E-value=0.018 Score=51.85 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=15.9
Q ss_pred EEEEEEccCCCcHHHHHHHHH-c
Q 046770 225 SVVSIIGMGGLGKTTLAQLVY-N 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~-~ 246 (475)
.+++|+|+.|+|||||++.+. .
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC-
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 589999999999999999998 5
No 225
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.95 E-value=0.37 Score=48.59 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=20.8
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHc
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
...++|.|+|.+|+||||++..++.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999998874
No 226
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.95 E-value=0.028 Score=50.91 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+++|+|+.|+|||||.+.+..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4899999999999999999865
No 227
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.95 E-value=0.03 Score=50.86 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+++|+|+.|+|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999975
No 228
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.90 E-value=0.027 Score=49.16 Aligned_cols=22 Identities=36% Similarity=0.381 Sum_probs=19.7
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 046770 226 VVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
+++|+|+.|+|||||++.++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999988764
No 229
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.88 E-value=0.031 Score=48.05 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=22.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..+++.|+|+.|+|||||+..+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3578999999999999999998864
No 230
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.87 E-value=0.029 Score=50.41 Aligned_cols=22 Identities=45% Similarity=0.564 Sum_probs=20.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+++|+|+.|+|||||.+.++.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999875
No 231
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.84 E-value=0.031 Score=49.18 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=19.9
Q ss_pred EEEEEccCCCcHHHHHHHHHc
Q 046770 226 VVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~ 246 (475)
+|+|.|+.|+||||+++.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999976
No 232
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.77 E-value=0.028 Score=50.10 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=20.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
..|.|.|++|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999987
No 233
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.75 E-value=0.031 Score=55.45 Aligned_cols=53 Identities=17% Similarity=0.268 Sum_probs=34.6
Q ss_pred ccccccchhHHHHHHHHhcC------CCCCCCCCccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 195 AKVYGRSKEREEIVELLLKE------DGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~------~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..++|-+..++.|...+... ..........+-+.++|++|+||||+|+.++..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 35788887777776665320 000000012345889999999999999999873
No 234
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=93.73 E-value=0.16 Score=51.29 Aligned_cols=58 Identities=12% Similarity=0.146 Sum_probs=40.5
Q ss_pred HHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCH-HHHHHH
Q 046770 206 EIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDI-IRVTKS 274 (475)
Q Consensus 206 ~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~-~~~l~~ 274 (475)
++++.|.....+ .-++|.|..|+|||+|++.+.+. .+-+.++++-+.+.... .+++..
T Consensus 216 rvID~l~PigkG-------qr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~ 274 (588)
T 3mfy_A 216 RVIDTFFPQAKG-------GTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEE 274 (588)
T ss_dssp HHHHHHSCEETT-------CEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHH
T ss_pred chhhccCCcccC-------CeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHH
Confidence 467777663322 36799999999999999998763 23357888888877654 344433
No 235
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.65 E-value=0.036 Score=52.90 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.+|+|.|+.|+||||||..++..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999998873
No 236
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=93.64 E-value=0.2 Score=48.95 Aligned_cols=46 Identities=28% Similarity=0.306 Sum_probs=31.9
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 196 KVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 196 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.++|....+.++.+.+..... .+.+ |.|.|..|+|||++|+.+...
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~-----~~~~-vli~Ge~GtGK~~lAr~ih~~ 183 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISC-----AECP-VLITGESGVGKEVVARLIHKL 183 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTT-----CCSC-EEEECSTTSSHHHHHHHHHHH
T ss_pred hhhhccHHhhHHHHHHHHhcC-----CCCC-eEEecCCCcCHHHHHHHHHHh
Confidence 356666667777666554221 2334 489999999999999998763
No 237
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.64 E-value=0.036 Score=49.10 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.7
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 046770 226 VVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
+|.|.|++|+||||.|+.+...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999873
No 238
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.64 E-value=0.044 Score=52.14 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=21.7
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.++|.|+|+.|+||||||..++..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999874
No 239
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.63 E-value=0.029 Score=49.81 Aligned_cols=23 Identities=35% Similarity=0.322 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.+++|+|+.|+|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999998753
No 240
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.62 E-value=0.043 Score=51.72 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHHc
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
..+++|+|+.|+||||++..++.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 36999999999999999998876
No 241
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.61 E-value=0.036 Score=49.70 Aligned_cols=21 Identities=38% Similarity=0.496 Sum_probs=19.3
Q ss_pred EEEEEccCCCcHHHHHHHHHc
Q 046770 226 VVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 242
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.60 E-value=0.057 Score=46.69 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=21.6
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
....|.|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457889999999999999998874
No 243
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.60 E-value=0.028 Score=51.41 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+|.|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 244
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.60 E-value=0.036 Score=50.30 Aligned_cols=23 Identities=26% Similarity=0.577 Sum_probs=20.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.+++|+|+.|+|||||.+.+..-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999764
No 245
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.59 E-value=0.035 Score=51.55 Aligned_cols=22 Identities=41% Similarity=0.572 Sum_probs=20.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+++|+|+.|+|||||++.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4899999999999999999865
No 246
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.55 E-value=0.036 Score=51.11 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+++|+|+.|+|||||.+.+..
T Consensus 33 e~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999865
No 247
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.55 E-value=0.036 Score=49.24 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=19.2
Q ss_pred EEEEEccCCCcHHHHHHHHHc
Q 046770 226 VVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 248
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.54 E-value=0.037 Score=49.90 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHHc
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
..+|.|.|++|+||||+++.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 249
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.47 E-value=0.043 Score=51.59 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
++|.|+|+.|+||||||..++..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 68999999999999999999864
No 250
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.45 E-value=0.081 Score=51.09 Aligned_cols=37 Identities=27% Similarity=0.381 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHc
Q 046770 204 REEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 204 ~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
...+...+.. .. .+..+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~-~~-----~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLP-DS-----GNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGG-GC-----CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHh-hc-----CCceEEEEECCCCCCHHHHHHHHHH
Confidence 4455555543 11 4568999999999999999998865
No 251
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.45 E-value=0.039 Score=50.15 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+++|+|+.|+|||||.+.++.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999965
No 252
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.44 E-value=0.041 Score=52.12 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.+|.|+|+.|+||||||..++..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999873
No 253
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.43 E-value=0.23 Score=49.50 Aligned_cols=51 Identities=16% Similarity=0.090 Sum_probs=34.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHH
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRS 278 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~ 278 (475)
.++.|.|.+|+||||||..++.+..... =..++|++.. .+..++...++..
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESS--SCHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECC--CCHHHHHHHHHHH
Confidence 5889999999999999999877432211 1346776654 3455666666543
No 254
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=93.43 E-value=0.43 Score=43.00 Aligned_cols=101 Identities=14% Similarity=0.154 Sum_probs=53.8
Q ss_pred EEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhc---C-C---C----CC-----CChH
Q 046770 227 VSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAM---G-I---V----DH-----NDLN 290 (475)
Q Consensus 227 v~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~---~-~---~----~~-----~~~~ 290 (475)
+.|+|+.|.|||.+|..+.... . ..++++ +... .+..++.+.+.. . . . .. .+.+
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~----~-~~~liv-~P~~----~L~~q~~~~~~~~~~~~v~~~~g~~~~~~~i~v~T~~ 180 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL----S-TPTLIV-VPTL----ALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYD 180 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS----C-SCEEEE-ESSH----HHHHHHHHHHGGGCGGGEEEESSSCBCCCSEEEEEHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHc----C-CCEEEE-eCCH----HHHHHHHHHHHhCCCCeEEEEeCCCCCcCCEEEEeHH
Confidence 7789999999999998877632 1 123333 2221 233333333322 1 0 0 00 1123
Q ss_pred HHHHHHHHHhCCceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecC
Q 046770 291 LLQWKLKKQLFGKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTR 341 (475)
Q Consensus 291 ~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR 341 (475)
.+..... .+..+--+||+|+++......+..+...+. ...++++|..
T Consensus 181 ~l~~~~~-~~~~~~~llIiDEaH~l~~~~~~~i~~~~~---~~~~l~LSAT 227 (237)
T 2fz4_A 181 SAYVNAE-KLGNRFMLLIFDEVHHLPAESYVQIAQMSI---APFRLGLTAT 227 (237)
T ss_dssp HHHHTHH-HHTTTCSEEEEECSSCCCTTTHHHHHHTCC---CSEEEEEEES
T ss_pred HHHhhHH-HhcccCCEEEEECCccCCChHHHHHHHhcc---CCEEEEEecC
Confidence 3333332 333445699999998765556777665554 2345665654
No 255
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.43 E-value=0.039 Score=51.00 Aligned_cols=22 Identities=45% Similarity=0.708 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+++|+|+.|+|||||++.+..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4899999999999999999975
No 256
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.42 E-value=0.054 Score=49.61 Aligned_cols=25 Identities=32% Similarity=0.340 Sum_probs=22.0
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHc
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
....++.+.|.||+||||++..+..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHH
Confidence 4567899999999999999999875
No 257
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.41 E-value=0.039 Score=50.69 Aligned_cols=22 Identities=41% Similarity=0.607 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+++|+|+.|+|||||.+.++.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999865
No 258
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.40 E-value=0.042 Score=49.53 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..|.|.|+.|+||||+|+.+...
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999873
No 259
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.40 E-value=0.043 Score=50.21 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+++|+|+.|+|||||.+.++.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999987
No 260
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.39 E-value=0.21 Score=46.76 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..++.++|.+|+||||++..++..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999988763
No 261
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.37 E-value=0.051 Score=51.79 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=21.9
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
...+++|+|+.|+||||++..++..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3479999999999999999998763
No 262
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=93.36 E-value=0.2 Score=50.84 Aligned_cols=50 Identities=16% Similarity=0.205 Sum_probs=36.9
Q ss_pred HHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCC
Q 046770 206 EIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDF 266 (475)
Q Consensus 206 ~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~ 266 (475)
++++.|.....+ .-++|.|..|+|||+|+..+.+.. +-+.++++-+.+..
T Consensus 221 rvID~l~PigrG-------qr~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGER~ 270 (600)
T 3vr4_A 221 RVIDTFFPVTKG-------GAAAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGERG 270 (600)
T ss_dssp HHHHHHSCCBTT-------CEEEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECH
T ss_pred hhhhccCCccCC-------CEEeeecCCCccHHHHHHHHHhcc----CCCEEEEEEecccH
Confidence 467777663322 367899999999999999998742 33578888887764
No 263
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.35 E-value=0.044 Score=49.88 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+++|+|+.|+|||||.+.++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999865
No 264
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.34 E-value=0.041 Score=50.73 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+++|+|+.|+|||||.+.++.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEcCCCCcHHHHHHHHHc
Confidence 4899999999999999999875
No 265
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.33 E-value=0.035 Score=49.48 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.+++|+|+.|+|||||.+.++.-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999763
No 266
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.33 E-value=0.043 Score=51.52 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999986
No 267
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.30 E-value=0.023 Score=53.34 Aligned_cols=24 Identities=21% Similarity=0.457 Sum_probs=18.5
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHc
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
+..+|+|.|+.|+||||+|+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 268
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.29 E-value=0.042 Score=50.13 Aligned_cols=22 Identities=41% Similarity=0.752 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+++|+|+.|+|||||.+.++.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999965
No 269
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.29 E-value=0.045 Score=56.98 Aligned_cols=43 Identities=28% Similarity=0.302 Sum_probs=35.3
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 195 AKVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 195 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..++|.+.-++.+...+.. + ..+.|+|++|+||||||+.+...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~--------g--~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQ--------K--RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHT--------T--CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccC--------C--CEEEEEeCCCCCHHHHHHHHhcc
Confidence 4689988888877777655 1 36899999999999999999874
No 270
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.27 E-value=0.046 Score=50.56 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=21.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.+++|+|+.|+|||||.+.++.-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999873
No 271
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=93.27 E-value=0.16 Score=50.65 Aligned_cols=96 Identities=21% Similarity=0.272 Sum_probs=54.5
Q ss_pred HHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHH-HHHHcCcccccCcC-eEEEEEecCCCC-HHHHHHHHHHHhhcC
Q 046770 206 EIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLA-QLVYNDSRVQCHFD-LKAWTYVSQDFD-IIRVTKSILRSVAMG 282 (475)
Q Consensus 206 ~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA-~~v~~~~~~~~~F~-~~~wv~v~~~~~-~~~~l~~il~~l~~~ 282 (475)
+.++.|.....+ .-++|.|..|+|||+|| ..+.+.. .-+ .++++-+.+... +.+++..+...-...
T Consensus 151 raID~l~PigrG-------QR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~ 219 (502)
T 2qe7_A 151 KAIDSMIPIGRG-------QRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALD 219 (502)
T ss_dssp HHHHHSSCCBTT-------CBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCST
T ss_pred eecccccccccC-------CEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcc
Confidence 367777663322 24689999999999995 5677642 245 357777777654 445555554321111
Q ss_pred C-----CCCCC--hHH-----HHHHHHHHh--CCceEEEEEECC
Q 046770 283 I-----VDHND--LNL-----LQWKLKKQL--FGKRFLLVLDDV 312 (475)
Q Consensus 283 ~-----~~~~~--~~~-----l~~~l~~~l--~~kr~LlVlDdv 312 (475)
. ...++ ... ..-.+-+++ +|+.+||++||+
T Consensus 220 ~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 220 YTIVVTASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp TEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred eeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 1 01111 111 011233333 689999999998
No 272
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.25 E-value=0.043 Score=47.29 Aligned_cols=22 Identities=41% Similarity=0.527 Sum_probs=19.7
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 046770 226 VVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
-|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 273
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.24 E-value=0.055 Score=50.79 Aligned_cols=25 Identities=24% Similarity=0.178 Sum_probs=21.9
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..++|.|+|+.|+||||||..++..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh
Confidence 3478999999999999999999863
No 274
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.23 E-value=0.044 Score=50.31 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+++|+|+.|+|||||.+.++.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999975
No 275
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.19 E-value=0.059 Score=45.41 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999864
No 276
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.19 E-value=0.045 Score=47.55 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.2
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.-.|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999864
No 277
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.18 E-value=0.056 Score=44.99 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
+-|.|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999998764
No 278
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.17 E-value=0.047 Score=54.00 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=22.8
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
....+|.|+|++|+||||+|+.+...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 44579999999999999999999873
No 279
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.15 E-value=0.045 Score=50.70 Aligned_cols=22 Identities=41% Similarity=0.687 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+++|+|+.|+|||||.+.++.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999975
No 280
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=93.13 E-value=0.3 Score=58.89 Aligned_cols=139 Identities=12% Similarity=0.036 Sum_probs=71.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCce
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKR 304 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr 304 (475)
+-|.++|++|+|||++|+.+.... ..+ ....++.+...+...+...+-..+.......... ..-.-.+++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~---~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~------~~P~~~gk~ 1337 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS---SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLT------LLPKSDIKN 1337 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC---SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEE------EEEBSSSSC
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC---CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCcc------ccCCCCCce
Confidence 357899999999999997776632 122 2345666766666554444433322110000000 000003678
Q ss_pred EEEEEECCCCCChh------hHhHhhCcCCCC-----C-------CCcEEEEecCChH------H-HHhcCCCceeeCCC
Q 046770 305 FLLVLDDVWNENYN------DWIDLSRPFQDG-----A-------PGSKIIITTRNAD------A-ALIMGTVQAYPLKG 359 (475)
Q Consensus 305 ~LlVlDdv~~~~~~------~~~~l~~~l~~~-----~-------~gs~ilvTtR~~~------v-~~~~~~~~~~~l~~ 359 (475)
++|.+||+.-...+ ..+.++..+..+ . .+..+|.++..+. + .........+.+..
T Consensus 1338 ~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~ 1417 (2695)
T 4akg_A 1338 LVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGY 1417 (2695)
T ss_dssp EEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCC
T ss_pred EEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeCC
Confidence 89999996322111 222222222111 1 1234555554331 1 11223346788888
Q ss_pred CCHHHHHHHHhhcc
Q 046770 360 LSNDDCMCLFTQHS 373 (475)
Q Consensus 360 L~~~~~~~lf~~~~ 373 (475)
.+.++-..+|....
T Consensus 1418 P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1418 PSGKSLSQIYEIYY 1431 (2695)
T ss_dssp CTTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 88888888887654
No 281
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.13 E-value=0.053 Score=49.92 Aligned_cols=111 Identities=16% Similarity=0.097 Sum_probs=54.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCC-CCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQD-FDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGK 303 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 303 (475)
.+++|+|+.|+|||||++.+..-.. ..+...+++.-... +-.... ..+ +.....+. +...+...+...+..+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i~~~~~~~-~~~---v~q~~~gl-~~~~l~~~la~aL~~~ 98 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIEYVFKHK-KSI---VNQREVGE-DTKSFADALRAALRED 98 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSCCSCCCCS-SSE---EEEEEBTT-TBSCHHHHHHHHHHHC
T ss_pred CEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcceeecCCc-cee---eeHHHhCC-CHHHHHHHHHHHHhhC
Confidence 6899999999999999999876321 11122332211100 000000 000 00000000 0012234556666556
Q ss_pred eEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCChHHHH
Q 046770 304 RFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNADAAL 347 (475)
Q Consensus 304 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 347 (475)
+=+|++|+.. +.+....+.... ..|..|++||...+...
T Consensus 99 p~illlDEp~--D~~~~~~~l~~~---~~g~~vl~t~H~~~~~~ 137 (261)
T 2eyu_A 99 PDVIFVGEMR--DLETVETALRAA---ETGHLVFGTLHTNTAID 137 (261)
T ss_dssp CSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEECCSSHHH
T ss_pred CCEEEeCCCC--CHHHHHHHHHHH---ccCCEEEEEeCcchHHH
Confidence 6688899985 333333333221 24667888888765443
No 282
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.12 E-value=0.046 Score=50.30 Aligned_cols=23 Identities=35% Similarity=0.683 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.+++|+|+.|+|||||.+.+..-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 48999999999999999999753
No 283
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.09 E-value=0.047 Score=49.85 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.+++|+|+.|+|||||.+.++.-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999998763
No 284
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.07 E-value=0.067 Score=48.32 Aligned_cols=38 Identities=21% Similarity=0.186 Sum_probs=27.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQ 264 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~ 264 (475)
.++.|.|++|+|||||+.+++.... ..=..++|++...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~--~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGL--KMGEPGIYVALEE 61 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEESSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccC
Confidence 5899999999999999988765321 1123567776554
No 285
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=93.06 E-value=0.2 Score=48.62 Aligned_cols=46 Identities=28% Similarity=0.330 Sum_probs=31.4
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 196 KVYGRSKEREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 196 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.++|....+.++...+..... .. ..|.|.|.+|+||+++|+.+...
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a~-----~~-~~vli~GesGtGKe~lAr~ih~~ 175 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIAK-----SK-APVLITGESGTGKEIVARLIHRY 175 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHHT-----SC-SCEEEECCTTSSHHHHHHHHHHH
T ss_pred cccccchHHHHHHhhhhhhhc-----cc-hhheEEeCCCchHHHHHHHHHHh
Confidence 467777666666555533111 12 23679999999999999999764
No 286
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.05 E-value=0.096 Score=47.12 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=22.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcCc
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYNDS 248 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~~ 248 (475)
-.+|.|.|+.|+||||+++.+.+..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999998743
No 287
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.04 E-value=0.059 Score=52.00 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=21.3
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHc
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
...+++|+|+.|+||||++..++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 347999999999999999998876
No 288
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.03 E-value=0.049 Score=49.87 Aligned_cols=23 Identities=30% Similarity=0.629 Sum_probs=20.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.+++|+|+.|+|||||.+.++.-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999764
No 289
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.01 E-value=0.049 Score=50.31 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+++|+|+.|+|||||.+.++.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999875
No 290
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=92.99 E-value=0.098 Score=47.15 Aligned_cols=90 Identities=20% Similarity=0.176 Sum_probs=45.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC-cccccCc-CeEEEEEecCCCCHHHHHHHHHHHhhcCCC---------------CC-
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND-SRVQCHF-DLKAWTYVSQDFDIIRVTKSILRSVAMGIV---------------DH- 286 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~-~~~~~~F-~~~~wv~v~~~~~~~~~l~~il~~l~~~~~---------------~~- 286 (475)
..+.|.|+.|+||||+.....-+ ....... ...+.+..........+...+...+..... ..
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 156 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHA 156 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSS
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCC
Confidence 47899999999999876554322 1111111 223333333333333444444333322110 00
Q ss_pred ----CChHHHHHHHHHHhCCceEEEEEECCCCC
Q 046770 287 ----NDLNLLQWKLKKQLFGKRFLLVLDDVWNE 315 (475)
Q Consensus 287 ----~~~~~l~~~l~~~l~~kr~LlVlDdv~~~ 315 (475)
.+...+.+.+...+.+- -+||+|+++..
T Consensus 157 ~Ivv~Tpg~l~~~l~~~l~~~-~~lVlDEah~~ 188 (235)
T 3llm_A 157 SIMFCTVGVLLRKLEAGIRGI-SHVIVDEIHER 188 (235)
T ss_dssp EEEEEEHHHHHHHHHHCCTTC-CEEEECCTTSC
T ss_pred eEEEECHHHHHHHHHhhhcCC-cEEEEECCccC
Confidence 12345555665544333 37899999763
No 291
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.96 E-value=0.05 Score=50.62 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.+++|+|+.|+|||||.+.++.-
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999999753
No 292
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.94 E-value=0.058 Score=47.11 Aligned_cols=23 Identities=30% Similarity=0.302 Sum_probs=20.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
+.|.|.|+.|+||||||..+...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 57889999999999999999874
No 293
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.91 E-value=0.079 Score=49.90 Aligned_cols=33 Identities=21% Similarity=0.395 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCc
Q 046770 204 REEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDS 248 (475)
Q Consensus 204 ~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 248 (475)
+++|.+.+.. .+++|+|+.|+|||||.+.+. ..
T Consensus 156 i~~L~~~l~G-----------~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYLEG-----------FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHTTT-----------CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhccC-----------cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 5667766543 488999999999999999998 53
No 294
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.91 E-value=0.049 Score=50.62 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.++.|+|++|+|||||+..++.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999998875
No 295
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.89 E-value=0.053 Score=51.55 Aligned_cols=25 Identities=36% Similarity=0.541 Sum_probs=22.5
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.++++.|+|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999999854
No 296
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.89 E-value=0.37 Score=47.90 Aligned_cols=49 Identities=16% Similarity=0.092 Sum_probs=33.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHH
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILR 277 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~ 277 (475)
.++.|.|.+|+||||||.+++.+.... =..++|++... +..++...++.
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEm--s~~ql~~R~~~ 246 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM--GKKENIKRLIV 246 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSS--CTTHHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCC--CHHHHHHHHHH
Confidence 588999999999999999988753322 13466665543 33455555544
No 297
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.88 E-value=0.053 Score=47.35 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999999875
No 298
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.87 E-value=0.057 Score=50.81 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+++|+|+.|.|||||++.+..
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhh
Confidence 5899999999999999999875
No 299
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.77 E-value=0.18 Score=58.89 Aligned_cols=82 Identities=22% Similarity=0.148 Sum_probs=55.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCC-----CCCChHHHHHHHHHH
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIV-----DHNDLNLLQWKLKKQ 299 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~-----~~~~~~~l~~~l~~~ 299 (475)
+++.|.|++|+||||||.+++.+... .=..++|++....++... .+.++.... ...+.+++...++..
T Consensus 384 ~lilI~G~pGsGKTtLaLqia~~~a~--~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~~l 456 (2050)
T 3cmu_A 384 RIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 456 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHh--cCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHHHH
Confidence 68999999999999999999874322 223678988888777542 344443221 345566666666654
Q ss_pred h-CCceEEEEEECCC
Q 046770 300 L-FGKRFLLVLDDVW 313 (475)
Q Consensus 300 l-~~kr~LlVlDdv~ 313 (475)
. +.+.-+||+|-+.
T Consensus 457 v~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 457 ARSGAVDVIVVDSVA 471 (2050)
T ss_dssp HHHTCCSEEEESCGG
T ss_pred HHhcCCcEEEECCHH
Confidence 4 3445699999984
No 300
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.72 E-value=0.071 Score=50.66 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=21.7
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
...++.|+|++|+||||++..++..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3479999999999999999988763
No 301
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.71 E-value=0.058 Score=50.55 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.++.|.|++|+|||||+..++..
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 58999999999999999998764
No 302
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.69 E-value=0.16 Score=58.37 Aligned_cols=83 Identities=22% Similarity=0.145 Sum_probs=55.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCC-----CCCChHHHHHHHHHH
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIV-----DHNDLNLLQWKLKKQ 299 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~-----~~~~~~~l~~~l~~~ 299 (475)
+++.|.|++|+||||||.+++.+.. ..=..++|++....++... .+.++.... ...+.+++...+...
T Consensus 384 ~lilI~G~pGsGKTtLaLq~a~~~~--~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~~l 456 (1706)
T 3cmw_A 384 RIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 456 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHH--HhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHHHH
Confidence 6899999999999999999877432 2224688998888777542 344433221 234556666666554
Q ss_pred h-CCceEEEEEECCCC
Q 046770 300 L-FGKRFLLVLDDVWN 314 (475)
Q Consensus 300 l-~~kr~LlVlDdv~~ 314 (475)
. +.+.-+||+|-+..
T Consensus 457 v~~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 457 ARSGAVDVIVVDSVAA 472 (1706)
T ss_dssp HHHTCCSEEEESCSTT
T ss_pred HHhcCCCEEEECCHHH
Confidence 4 34456999999854
No 303
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=92.62 E-value=0.24 Score=49.55 Aligned_cols=96 Identities=20% Similarity=0.230 Sum_probs=54.7
Q ss_pred HHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHH-HHHHcCcccccCcC-eEEEEEecCCCC-HHHHHHHHHHHhhcC
Q 046770 206 EIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLA-QLVYNDSRVQCHFD-LKAWTYVSQDFD-IIRVTKSILRSVAMG 282 (475)
Q Consensus 206 ~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA-~~v~~~~~~~~~F~-~~~wv~v~~~~~-~~~~l~~il~~l~~~ 282 (475)
+.++.|.....+ .-++|.|..|+|||+|| ..+.+.. .-+ .++++-+.+... +.+++..+...-...
T Consensus 164 raID~l~PigrG-------QR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~ 232 (515)
T 2r9v_A 164 KAIDSMIPIGRG-------QRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAME 232 (515)
T ss_dssp HHHHHHSCEETT-------CBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGG
T ss_pred cccccccccccC-------CEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcc
Confidence 456777653322 24789999999999995 5777743 245 357777777654 445555554321111
Q ss_pred C-----CCCCC--hHH-----HHHHHHHHh--CCceEEEEEECC
Q 046770 283 I-----VDHND--LNL-----LQWKLKKQL--FGKRFLLVLDDV 312 (475)
Q Consensus 283 ~-----~~~~~--~~~-----l~~~l~~~l--~~kr~LlVlDdv 312 (475)
. ...++ ... ..-.+-+++ +|+.+||++||+
T Consensus 233 rtvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 233 YTTVVVASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp GEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred eeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 0 01111 111 111233333 689999999998
No 304
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.60 E-value=0.061 Score=44.79 Aligned_cols=22 Identities=27% Similarity=0.655 Sum_probs=19.5
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 046770 226 VVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
-|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999764
No 305
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.54 E-value=0.081 Score=45.42 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999874
No 306
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.52 E-value=0.071 Score=45.04 Aligned_cols=24 Identities=38% Similarity=0.552 Sum_probs=20.7
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.--|.|+|.+|+|||||...+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 346789999999999999999764
No 307
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.48 E-value=0.2 Score=44.39 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..|.|.|+.|+||||+++.+.+.
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 58899999999999999999874
No 308
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=92.47 E-value=0.39 Score=48.10 Aligned_cols=100 Identities=21% Similarity=0.242 Sum_probs=55.4
Q ss_pred HHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHH-HHHHcCccc----ccCcC-eEEEEEecCCCC-HHHHHHHHHHH
Q 046770 206 EIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLA-QLVYNDSRV----QCHFD-LKAWTYVSQDFD-IIRVTKSILRS 278 (475)
Q Consensus 206 ~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA-~~v~~~~~~----~~~F~-~~~wv~v~~~~~-~~~~l~~il~~ 278 (475)
+.++.|.....+ .-++|.|..|+|||+|| ..+.+.... .++-+ .++++-+.+... +.++...+...
T Consensus 151 raID~l~PigrG-------QR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~ 223 (510)
T 2ck3_A 151 KAVDSLVPIGRG-------QRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDA 223 (510)
T ss_dssp HHHHHHSCCBTT-------CBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHT
T ss_pred eeeccccccccC-------CEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhc
Confidence 467777663332 24689999999999995 566664321 12344 477788877654 44555555432
Q ss_pred hhcCC-----CCCCC--hHH-----HHHHHHHHh--CCceEEEEEECC
Q 046770 279 VAMGI-----VDHND--LNL-----LQWKLKKQL--FGKRFLLVLDDV 312 (475)
Q Consensus 279 l~~~~-----~~~~~--~~~-----l~~~l~~~l--~~kr~LlVlDdv 312 (475)
-.... ...++ ... ..-.+-+++ +|+.+||++||+
T Consensus 224 g~m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 224 DAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp TCGGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred CCcccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence 11000 01111 111 111233333 689999999998
No 309
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.47 E-value=0.068 Score=49.46 Aligned_cols=21 Identities=33% Similarity=0.751 Sum_probs=19.1
Q ss_pred EEEEEccCCCcHHHHHHHHHc
Q 046770 226 VVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.++|+|+.|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999875
No 310
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.47 E-value=0.065 Score=48.22 Aligned_cols=23 Identities=35% Similarity=0.161 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCcHHHHHHHHHc
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
-.+|+|.|+.|+|||||++.+..
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999887
No 311
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.45 E-value=0.065 Score=49.36 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+++|+|+.|+|||||.+.++.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999975
No 312
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.44 E-value=0.071 Score=48.13 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=21.8
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHc
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
....+|+|+|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3446899999999999999999876
No 313
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=92.43 E-value=0.086 Score=57.38 Aligned_cols=20 Identities=25% Similarity=0.134 Sum_probs=19.0
Q ss_pred EEEEEEccCCCcHHHHHHHH
Q 046770 225 SVVSIIGMGGLGKTTLAQLV 244 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v 244 (475)
.+++|+|+.|.||||+.+.+
T Consensus 663 ~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999988
No 314
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.43 E-value=0.067 Score=44.77 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=20.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
--|.|+|.+|+|||||...+.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 45789999999999999998764
No 315
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.42 E-value=0.078 Score=53.13 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=22.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.-.+++|+|..|+|||||++.++..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHH
Confidence 4579999999999999999998763
No 316
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.38 E-value=0.091 Score=44.53 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=21.6
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
+...|.|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4467889999999999999999764
No 317
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.30 E-value=0.17 Score=45.22 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=22.5
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcCc
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYNDS 248 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 248 (475)
....|.|.|+.|+||||+++.+.+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34789999999999999999998743
No 318
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.30 E-value=0.057 Score=50.88 Aligned_cols=22 Identities=27% Similarity=0.714 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+++|+|+.|.|||||++.+..
T Consensus 81 e~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTT
T ss_pred CEEEEECCCCchHHHHHHHHHc
Confidence 4899999999999999999865
No 319
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=92.29 E-value=0.14 Score=47.06 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 205 EEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 205 ~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.-+..||.... ++...+.++|++|+|||.+|..+++.
T Consensus 91 ~~l~~~l~~~~------~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 91 SVFLGWATKKF------GKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHTTCS------TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCC------CCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 44666765511 22356899999999999999999873
No 320
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=92.22 E-value=0.71 Score=46.07 Aligned_cols=94 Identities=19% Similarity=0.220 Sum_probs=54.2
Q ss_pred HHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHH-HHHHcCcccccCcC-eEEEEEecCCCC-HHHHHHHHHHHhhcC
Q 046770 206 EIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLA-QLVYNDSRVQCHFD-LKAWTYVSQDFD-IIRVTKSILRSVAMG 282 (475)
Q Consensus 206 ~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA-~~v~~~~~~~~~F~-~~~wv~v~~~~~-~~~~l~~il~~l~~~ 282 (475)
+.++.|.....+ .-++|.|..|+|||+|+ ..+.+. .+-+ .++++-+.+... +.+++..+.+.-...
T Consensus 151 kaID~l~PigrG-------QR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~ 219 (513)
T 3oaa_A 151 KAVDSMIPIGRG-------QRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALA 219 (513)
T ss_dssp HHHHHHSCCBTT-------CBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCST
T ss_pred eeeccccccccC-------CEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCccc
Confidence 356777663322 24689999999999996 566663 2234 367888887654 445555544321111
Q ss_pred C-----CCCCChH-----------HHHHHHHHHhCCceEEEEEECC
Q 046770 283 I-----VDHNDLN-----------LLQWKLKKQLFGKRFLLVLDDV 312 (475)
Q Consensus 283 ~-----~~~~~~~-----------~l~~~l~~~l~~kr~LlVlDdv 312 (475)
. ...++.. ...+.+++ +|+..||++||+
T Consensus 220 ~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd--~G~dVLli~Dsl 263 (513)
T 3oaa_A 220 NTIVVVATASESAALQYLAPYAGCAMGEYFRD--RGEDALIIYDDL 263 (513)
T ss_dssp TEEEEEECTTSCHHHHHHHHHHHHHHHHHHHH--TTCEEEEEEETH
T ss_pred ceEEEEECCCCChHHHHHHHHHHHHHHHHHHh--cCCCEEEEecCh
Confidence 1 0111111 12223332 689999999998
No 321
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.21 E-value=0.08 Score=47.91 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=21.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..|.|.|..|+||||+++.+.+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999873
No 322
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.09 E-value=0.077 Score=45.67 Aligned_cols=23 Identities=26% Similarity=0.599 Sum_probs=20.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
--|.|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35789999999999999999764
No 323
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.07 E-value=0.083 Score=51.34 Aligned_cols=23 Identities=30% Similarity=0.144 Sum_probs=21.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHHc
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
-.+++|+|++|+|||||++.+..
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999986
No 324
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.07 E-value=0.083 Score=44.33 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=19.6
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 046770 226 VVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
-|.|+|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4679999999999999999864
No 325
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.05 E-value=0.099 Score=45.14 Aligned_cols=25 Identities=16% Similarity=0.401 Sum_probs=21.6
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
+...|.|+|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457889999999999999999865
No 326
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.03 E-value=0.081 Score=44.14 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=20.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.-|.|+|.+|+|||||...+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999999764
No 327
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.02 E-value=0.086 Score=45.24 Aligned_cols=22 Identities=23% Similarity=0.521 Sum_probs=19.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+.+|+|+.|+|||||+..++-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999998864
No 328
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.02 E-value=0.08 Score=51.00 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+++|+|+.|+|||||.+.++.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 4899999999999999999975
No 329
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=91.99 E-value=0.24 Score=48.94 Aligned_cols=100 Identities=13% Similarity=0.173 Sum_probs=55.9
Q ss_pred HHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccc-cCcC-eEEEEEecCCC-CHHHHHHHHHHHhhcC
Q 046770 206 EIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQ-CHFD-LKAWTYVSQDF-DIIRVTKSILRSVAMG 282 (475)
Q Consensus 206 ~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~F~-~~~wv~v~~~~-~~~~~l~~il~~l~~~ 282 (475)
+.++.|.....+ .-++|.|..|+|||+|+.++.+..... ++-+ .++++-+.+.. .+.+++..+...=...
T Consensus 140 raID~l~pigrG-------Qr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~ 212 (465)
T 3vr4_D 140 SAIDHLNTLVRG-------QKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAID 212 (465)
T ss_dssp HHHHTTSCCBTT-------CBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGG
T ss_pred eEEecccccccC-------CEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCcc
Confidence 356666653322 236788999999999999998854321 1111 56777777654 3455555554431111
Q ss_pred C-------CCCCChHH-----HHHHHHHHh---CCceEEEEEECC
Q 046770 283 I-------VDHNDLNL-----LQWKLKKQL---FGKRFLLVLDDV 312 (475)
Q Consensus 283 ~-------~~~~~~~~-----l~~~l~~~l---~~kr~LlVlDdv 312 (475)
. .+...... ..-.+.+++ +++.+||++||+
T Consensus 213 rtvvV~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 213 RSVMFMNLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp GEEEEEEETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 0 11111111 111234444 388999999998
No 330
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.99 E-value=0.082 Score=51.53 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
++|+|.|+.|+||||||..++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 5899999999999999999876
No 331
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.99 E-value=0.087 Score=44.22 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=19.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
--|.|+|.+|+|||||...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3478999999999999999864
No 332
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.98 E-value=0.076 Score=44.43 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=19.2
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 046770 226 VVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
-|.|+|.+|+|||||...+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999998753
No 333
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=91.97 E-value=0.088 Score=44.76 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999864
No 334
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.95 E-value=0.078 Score=49.59 Aligned_cols=23 Identities=26% Similarity=0.596 Sum_probs=20.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.+++|+|+.|+|||||.+.+..-
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 48999999999999999999764
No 335
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.93 E-value=0.094 Score=46.36 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=21.7
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
....|.|+|.+|+|||||+..+...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4467889999999999999999875
No 336
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=91.91 E-value=0.11 Score=44.60 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=21.6
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
....|.|+|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3457889999999999999999875
No 337
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.91 E-value=0.12 Score=48.59 Aligned_cols=33 Identities=27% Similarity=0.505 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 204 REEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 204 ~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
++++..++.. .+++|+|+.|+|||||.+.+...
T Consensus 160 v~~lf~~l~g-----------eiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 160 IEELKEYLKG-----------KISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp HHHHHHHHSS-----------SEEEEECSTTSSHHHHHHHHSTT
T ss_pred HHHHHHHhcC-----------CeEEEECCCCCcHHHHHHHhccc
Confidence 5667766644 47899999999999999999863
No 338
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=91.90 E-value=0.085 Score=44.28 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=20.7
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.--|.|+|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 356789999999999999998864
No 339
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.88 E-value=0.086 Score=44.13 Aligned_cols=22 Identities=14% Similarity=0.397 Sum_probs=19.4
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 046770 226 VVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
-|.|+|.+|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998764
No 340
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.84 E-value=0.1 Score=49.00 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.+++|+|.+|+||||++..++..
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58899999999999999998764
No 341
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=91.84 E-value=0.088 Score=43.87 Aligned_cols=22 Identities=32% Similarity=0.604 Sum_probs=19.4
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 046770 226 VVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
-|.|+|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988754
No 342
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.84 E-value=0.1 Score=49.19 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=21.4
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
...++|+|+|-||+||||+|..++..
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~ 64 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAA 64 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHHH
Confidence 45688999999999999999887653
No 343
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.83 E-value=0.11 Score=44.68 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
...|.|+|.+|+|||||...+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 456789999999999999999875
No 344
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=91.83 E-value=0.048 Score=56.61 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.9
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 046770 226 VVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
-|.++|++|+|||+||+.+++.
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTT
T ss_pred ceEEECCCchHHHHHHHHHHHh
Confidence 4789999999999999999874
No 345
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.80 E-value=0.25 Score=43.19 Aligned_cols=49 Identities=18% Similarity=0.137 Sum_probs=29.3
Q ss_pred EEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHH
Q 046770 226 VVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSIL 276 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il 276 (475)
.|+|-|.-|+||||.++.+++.. ...-..+.+..-.......+.++.++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L--~~~g~~v~~treP~~t~~~~~ir~~l 50 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYL--EKRGKKVILKREPGGTETGEKIRKIL 50 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH--HHCCCcEEEEECCCCCcHHHHHHHHh
Confidence 46788999999999999998743 22222233333333333444455544
No 346
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.80 E-value=0.089 Score=43.96 Aligned_cols=22 Identities=27% Similarity=0.582 Sum_probs=19.5
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 046770 226 VVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
-|.|+|.+|+|||||...+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998764
No 347
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=91.78 E-value=0.091 Score=50.69 Aligned_cols=54 Identities=15% Similarity=0.164 Sum_probs=32.5
Q ss_pred HHHHHhCCceEEEEEECCCCC-ChhhHhHhhCcCCC--CCCCcEEEEecCChHHHHh
Q 046770 295 KLKKQLFGKRFLLVLDDVWNE-NYNDWIDLSRPFQD--GAPGSKIIITTRNADAALI 348 (475)
Q Consensus 295 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~ilvTtR~~~v~~~ 348 (475)
.|.+.|..++=+|++|+--.. +...-..+...+.. ...|..||++|.+-+.+..
T Consensus 173 aIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~ 229 (366)
T 3tui_C 173 AIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKR 229 (366)
T ss_dssp HHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHH
T ss_pred HHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH
Confidence 466777788889999997432 22222233333321 1237788888888666543
No 348
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.76 E-value=0.089 Score=45.29 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=19.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
--|.|+|.+|+|||||...+.+.
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999887654
No 349
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.76 E-value=0.094 Score=44.98 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.7
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 046770 226 VVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
-|.|+|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998875
No 350
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=91.76 E-value=0.091 Score=44.05 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
--|.|+|.+|+|||||...+.+.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45789999999999999998765
No 351
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.73 E-value=0.087 Score=45.18 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=20.5
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.--|.|+|.+|+|||||+..+.+.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 345779999999999999998764
No 352
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.70 E-value=0.093 Score=50.48 Aligned_cols=22 Identities=36% Similarity=0.659 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+++|+|+.|+|||||.+.++.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999975
No 353
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.69 E-value=0.2 Score=42.95 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..-|.|+|.+|+|||||...+...
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 356789999999999999999854
No 354
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=91.61 E-value=0.095 Score=44.35 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=21.1
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..--|.|+|.+|+|||||...+...
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 3456789999999999999998764
No 355
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.60 E-value=0.067 Score=49.17 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=21.9
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
+...|.|.|+.|+||||+++.+.+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3478999999999999999988773
No 356
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=91.58 E-value=0.11 Score=49.87 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=21.7
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHc
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
...+|+|+|.+|+|||||...+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 357999999999999999999875
No 357
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.55 E-value=0.21 Score=45.00 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDS 248 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~ 248 (475)
.+|.|.|+.|+||||+++.+.+..
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998743
No 358
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.54 E-value=0.097 Score=45.13 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=19.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
--|.|+|.+|+|||||...+.+.
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 45789999999999999888764
No 359
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=91.51 E-value=0.18 Score=50.39 Aligned_cols=81 Identities=21% Similarity=0.234 Sum_probs=46.9
Q ss_pred EEEEEccCCCcHHHHH-HHHHcCcccccCcC-eEEEEEecCCCC-HHHHHHHHHHHhhcCC-------CCCCCh------
Q 046770 226 VVSIIGMGGLGKTTLA-QLVYNDSRVQCHFD-LKAWTYVSQDFD-IIRVTKSILRSVAMGI-------VDHNDL------ 289 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA-~~v~~~~~~~~~F~-~~~wv~v~~~~~-~~~~l~~il~~l~~~~-------~~~~~~------ 289 (475)
-++|.|..|+|||+|| ..+.+.. .-+ .++++-+.+... +.+++..+...-.... .+....
T Consensus 165 R~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~ 240 (507)
T 1fx0_A 165 RELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAP 240 (507)
T ss_dssp BCBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHH
T ss_pred EEEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHHH
Confidence 4689999999999995 5777743 234 457777777654 3344444433110000 011110
Q ss_pred ---HHHHHHHHHHhCCceEEEEEECC
Q 046770 290 ---NLLQWKLKKQLFGKRFLLVLDDV 312 (475)
Q Consensus 290 ---~~l~~~l~~~l~~kr~LlVlDdv 312 (475)
-...+.++. +|+.+||++||+
T Consensus 241 ~~a~tiAEyfrd--~G~dVLli~Dsl 264 (507)
T 1fx0_A 241 YTGAALAEYFMY--RERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHHHHHHH--TTCEEEEEEECH
T ss_pred HHHHHHHHHHHH--cCCcEEEEEecH
Confidence 122333443 699999999997
No 360
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.51 E-value=0.1 Score=50.72 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+++|+|+.|+|||||.+.+..
T Consensus 30 e~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHc
Confidence 4899999999999999999976
No 361
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.51 E-value=0.094 Score=44.47 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=21.9
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
....-|.|+|.+|+|||||...+...
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC
Confidence 34556789999999999999999765
No 362
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=91.48 E-value=0.097 Score=43.86 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=19.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
--|.|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35789999999999999998754
No 363
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=91.48 E-value=0.12 Score=43.80 Aligned_cols=25 Identities=40% Similarity=0.555 Sum_probs=21.2
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
...-|.|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3456789999999999999998764
No 364
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.48 E-value=0.1 Score=50.33 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+++|+|+.|+|||||.+.++.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHC
Confidence 4899999999999999999975
No 365
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.48 E-value=0.1 Score=44.19 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=20.5
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.--|.|+|.+|+|||||...+.+.
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 345789999999999999998764
No 366
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=91.48 E-value=0.19 Score=49.68 Aligned_cols=100 Identities=11% Similarity=0.158 Sum_probs=55.8
Q ss_pred HHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccc--------cCcC-eEEEEEecCCCC-HHHHHHHH
Q 046770 206 EIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQ--------CHFD-LKAWTYVSQDFD-IIRVTKSI 275 (475)
Q Consensus 206 ~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------~~F~-~~~wv~v~~~~~-~~~~l~~i 275 (475)
+.++.|.....+ .-++|.|..|+|||+|+..+.+..... ++-+ .++++-+.+... +.+++..+
T Consensus 136 raID~l~pigrG-------Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l 208 (464)
T 3gqb_B 136 STIDVMNTLVRG-------QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEF 208 (464)
T ss_dssp HHHHTTSCCBTT-------CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHH
T ss_pred eeeecccccccC-------CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHh
Confidence 356666653322 235788999999999999998754331 1112 566777776543 44555554
Q ss_pred HHH--hhc-----CCCCCCChHHH-----HHHHHHHh---CCceEEEEEECC
Q 046770 276 LRS--VAM-----GIVDHNDLNLL-----QWKLKKQL---FGKRFLLVLDDV 312 (475)
Q Consensus 276 l~~--l~~-----~~~~~~~~~~l-----~~~l~~~l---~~kr~LlVlDdv 312 (475)
... +.. ...+....... .-.+.+++ +++.+||++||+
T Consensus 209 ~~~g~~~rtvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 209 ERTGALSRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp HHTSGGGGEEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred hhcccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 332 100 00112222111 11234444 388999999998
No 367
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.47 E-value=0.097 Score=43.66 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=18.3
Q ss_pred EEEEccCCCcHHHHHHHHHc
Q 046770 227 VSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 227 v~I~G~gGiGKTtLA~~v~~ 246 (475)
|.|+|.+|+|||||...+..
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999999865
No 368
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=91.43 E-value=0.24 Score=46.12 Aligned_cols=43 Identities=7% Similarity=0.170 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCc
Q 046770 204 REEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDS 248 (475)
Q Consensus 204 ~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 248 (475)
++++.+.|........ .....|+|+|.+|+|||||...+....
T Consensus 8 ~~~l~~~l~~~~~~~~--~~~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 8 VNRLQDAFSAIGQNAD--LDLPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp HHHHHHHHTTSCCCTT--CCCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred HHHHHHHHHhcCCCCC--CCCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 3455555544221111 345689999999999999999998753
No 369
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=91.42 E-value=0.13 Score=43.58 Aligned_cols=25 Identities=24% Similarity=0.468 Sum_probs=21.5
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
...-|.|+|..|+|||||...+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456889999999999999998765
No 370
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=91.40 E-value=0.086 Score=44.77 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=20.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
--|.|+|.+|+|||||...+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999998764
No 371
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.38 E-value=0.11 Score=50.28 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+++|+|+.|+|||||.+.++.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 4899999999999999999975
No 372
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.35 E-value=0.11 Score=43.55 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=20.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
--|.|+|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999998754
No 373
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.31 E-value=0.11 Score=50.38 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.6
Q ss_pred cEEEEEEccCCCcHHHHHHHHHc
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
...++|+|+.|+|||||++.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 36789999999999999999875
No 374
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.30 E-value=0.11 Score=50.45 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+++|+|+.|+|||||.+.++.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCcHHHHHHHHHHc
Confidence 4899999999999999999975
No 375
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=91.26 E-value=0.59 Score=50.01 Aligned_cols=33 Identities=27% Similarity=0.483 Sum_probs=23.2
Q ss_pred hHHHHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHH
Q 046770 203 EREEIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVY 245 (475)
Q Consensus 203 e~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~ 245 (475)
..+.+...+.. . .++.|+|+.|.||||++..+.
T Consensus 98 q~~~i~~~l~~-~---------~~vii~gpTGSGKTtllp~ll 130 (773)
T 2xau_A 98 QRDEFLKLYQN-N---------QIMVFVGETGSGKTTQIPQFV 130 (773)
T ss_dssp GHHHHHHHHHH-C---------SEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHHHhC-C---------CeEEEECCCCCCHHHHHHHHH
Confidence 34556666544 1 478999999999999665554
No 376
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=91.24 E-value=0.11 Score=45.07 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..|.|+|.+|+|||||...+.++
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36789999999999999998864
No 377
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.23 E-value=0.2 Score=44.97 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=17.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..|.|.|+.|+||||+++.+.+.
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999874
No 378
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.22 E-value=0.17 Score=48.72 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.+++|+|++|+|||||.+.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 37899999999999999999874
No 379
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.22 E-value=0.11 Score=50.31 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+++|+|+.|+|||||.+.++.
T Consensus 38 e~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHHc
Confidence 4899999999999999999975
No 380
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=91.20 E-value=0.42 Score=47.20 Aligned_cols=25 Identities=32% Similarity=0.268 Sum_probs=22.7
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHc
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
...++..|.|.+|.||||+.+..++
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhc
Confidence 5678999999999999999999886
No 381
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.16 E-value=0.11 Score=44.41 Aligned_cols=23 Identities=22% Similarity=0.505 Sum_probs=20.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
--|.|+|.+|+|||||...+.+.
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999999864
No 382
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.16 E-value=0.093 Score=50.39 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+++|+|+.|+|||||.+.++.
T Consensus 27 e~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHT
T ss_pred CEEEEECCCCccHHHHHHHHHc
Confidence 4899999999999999999976
No 383
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.13 E-value=0.21 Score=49.20 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+++|+|+.|+|||||.+.+..
T Consensus 168 gii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999998865
No 384
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.13 E-value=0.078 Score=52.59 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=21.5
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
...+|.|+|.+|+||||++..+...
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999888763
No 385
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.13 E-value=0.11 Score=44.42 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=21.1
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..--|.|+|.+|+|||||...+.+.
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3456789999999999999998764
No 386
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=91.11 E-value=0.11 Score=44.21 Aligned_cols=24 Identities=25% Similarity=0.545 Sum_probs=20.7
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.--|.|+|.+|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456789999999999999998864
No 387
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=91.10 E-value=0.13 Score=44.75 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=20.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.-|+|+|.+|+|||||...+..+
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999998763
No 388
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.10 E-value=0.11 Score=43.90 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=19.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
--|.|+|..|+|||||...+..+
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999998754
No 389
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=91.07 E-value=0.14 Score=49.00 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=21.3
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHc
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
...+++|+|++|+|||||.+.+..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 347999999999999999999874
No 390
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=91.05 E-value=0.12 Score=44.46 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=21.2
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..--|.|+|.+|+|||||...+...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456789999999999999999864
No 391
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.04 E-value=0.3 Score=43.29 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDS 248 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~ 248 (475)
..|.|.|+.|+||||+++.+.+..
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999998743
No 392
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=91.03 E-value=0.13 Score=44.96 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
--|.|+|.+|+|||||...+.++
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 45789999999999999888764
No 393
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.02 E-value=0.12 Score=44.12 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=19.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
--|.|+|.+|+|||||...+.++
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999998754
No 394
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=91.01 E-value=0.11 Score=44.75 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=19.7
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.--|.|+|.+|+|||||.+.+.+.
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHhh
Confidence 345789999999999999877653
No 395
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=91.00 E-value=0.12 Score=44.82 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=19.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
--|.|+|.+|+|||||...+..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4578999999999999998873
No 396
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=90.99 E-value=0.16 Score=42.62 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=20.6
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..-|.|+|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 356789999999999999999754
No 397
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=90.98 E-value=0.12 Score=44.83 Aligned_cols=22 Identities=27% Similarity=0.092 Sum_probs=18.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.++.|+|+.|+||||++..++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999966654
No 398
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=90.97 E-value=0.12 Score=44.63 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=21.1
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..--|+|+|..|+|||||...+...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3456789999999999999998764
No 399
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=90.96 E-value=0.097 Score=45.58 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=20.3
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHc
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
..--|.|+|.+|+|||||...+..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 345688999999999999999853
No 400
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=90.96 E-value=0.14 Score=44.30 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=22.0
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.....|.|+|.+|+|||||...+...
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999999775
No 401
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=90.96 E-value=0.099 Score=46.38 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+|.|+|+.|+||||+++.+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998876
No 402
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.94 E-value=0.34 Score=55.85 Aligned_cols=82 Identities=23% Similarity=0.140 Sum_probs=58.6
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCC-----CCCChHHHHHHHHH
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIV-----DHNDLNLLQWKLKK 298 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~-----~~~~~~~l~~~l~~ 298 (475)
-++|-|+|+.|+||||||.++... .+..=...+|+...+..++.- ++.++.... .++..++..+.+..
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~--~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~~ 1503 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 1503 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH--HHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHHH
Confidence 378999999999999999998863 333446788998888888553 566655432 34444666666666
Q ss_pred HhC-CceEEEEEECC
Q 046770 299 QLF-GKRFLLVLDDV 312 (475)
Q Consensus 299 ~l~-~kr~LlVlDdv 312 (475)
.++ +..-+||+|-|
T Consensus 1504 ~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1504 LARSGAVDVIVVDSV 1518 (1706)
T ss_dssp HHHHTCCSEEEESCS
T ss_pred HHHcCCCCEEEEccH
Confidence 664 45669999998
No 403
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=90.92 E-value=0.12 Score=44.02 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.-|.|+|.+|+|||||...+...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 46789999999999999999764
No 404
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=90.92 E-value=0.13 Score=47.18 Aligned_cols=23 Identities=39% Similarity=0.595 Sum_probs=19.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
++|+|.|-||+||||+|..++..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~ 24 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSG 24 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHHH
Confidence 57788899999999999887753
No 405
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=90.91 E-value=0.067 Score=46.97 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..|+|+|..|+|||||.+.+...
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999988764
No 406
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=90.88 E-value=0.19 Score=50.69 Aligned_cols=50 Identities=20% Similarity=0.156 Sum_probs=36.1
Q ss_pred HHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCC
Q 046770 206 EIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDF 266 (475)
Q Consensus 206 ~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~ 266 (475)
+.++.|.....+ .-++|.|..|+|||+|+..+.+.. +-+.++++-+.+..
T Consensus 210 rvID~l~PigrG-------qr~~Ifg~~g~GKT~l~~~ia~~~----~~~v~V~~~iGER~ 259 (578)
T 3gqb_A 210 RILDVLFPVAMG-------GTAAIPGPFGSGKSVTQQSLAKWS----NADVVVYVGSGERG 259 (578)
T ss_dssp HHHHTTSCEETT-------CEEEECCCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECH
T ss_pred hhhhhcccccCC-------CEEeeeCCCCccHHHHHHHHHhcc----CCCEEEEEEecccH
Confidence 466766653322 357899999999999999998742 33577888887764
No 407
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=90.88 E-value=0.12 Score=43.81 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=20.5
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.--|.|+|.+|+|||||...+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 345789999999999999998764
No 408
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=90.87 E-value=0.16 Score=45.27 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=21.2
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
...|.|+|.+|+|||||...+...
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467889999999999999999875
No 409
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=90.85 E-value=0.16 Score=42.82 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=21.4
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
...-|.|+|.+|+|||||...+...
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3456889999999999999999764
No 410
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=90.84 E-value=0.13 Score=43.81 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=19.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
--|.|+|.+|+|||||...+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35779999999999999998864
No 411
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.83 E-value=0.15 Score=44.77 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=20.7
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..-|+|+|.+|+|||||...+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456789999999999999998754
No 412
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=90.82 E-value=0.13 Score=44.72 Aligned_cols=23 Identities=17% Similarity=0.564 Sum_probs=19.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
--|.|+|.+|+|||||.+.+.+.
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 45789999999999999987764
No 413
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.81 E-value=0.14 Score=45.68 Aligned_cols=22 Identities=23% Similarity=0.122 Sum_probs=18.8
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 046770 226 VVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.|.+.|.||+||||+|..+...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4778999999999998887764
No 414
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=90.81 E-value=0.14 Score=43.57 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=21.3
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
...-|.|+|.+|+|||||...+.+.
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 3457889999999999999999854
No 415
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.81 E-value=0.13 Score=49.96 Aligned_cols=111 Identities=14% Similarity=0.051 Sum_probs=55.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEE-EEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKA-WTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGK 303 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~-wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 303 (475)
.+++|+|+.|+|||||++.+..... ......+ ++. ++... .+..-. .+..+..-..+...+...+...+...
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~--~~~~g~I~~~e--~~~e~--~~~~~~-~~v~Q~~~g~~~~~~~~~l~~~L~~~ 209 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIE--DPIEY--VFKHKK-SIVNQREVGEDTKSFADALRAALRED 209 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHH--HHSCCEEEEEE--SSCCS--CCCCSS-SEEEEEEBTTTBSCSHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcC--cCCCcEEEEec--ccHhh--hhccCc-eEEEeeecCCCHHHHHHHHHHHhhhC
Confidence 6899999999999999999876321 1111222 221 11100 000000 00000000001112244677777667
Q ss_pred eEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCChHHHH
Q 046770 304 RFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNADAAL 347 (475)
Q Consensus 304 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 347 (475)
+=+|++|++.+ .+......... ..|..++.|+...++..
T Consensus 210 pd~illdE~~d--~e~~~~~l~~~---~~g~~vi~t~H~~~~~~ 248 (372)
T 2ewv_A 210 PDVIFVGEMRD--LETVETALRAA---ETGHLVFGTLHTNTAID 248 (372)
T ss_dssp CSEEEESCCCS--HHHHHHHHHHH---TTTCEEEECCCCCSHHH
T ss_pred cCEEEECCCCC--HHHHHHHHHHH---hcCCEEEEEECcchHHH
Confidence 77999999953 33333333222 24667888887755443
No 416
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=90.78 E-value=0.087 Score=50.73 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+++|+|+.|+|||||.+.++.
T Consensus 32 e~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999975
No 417
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=90.77 E-value=0.14 Score=44.62 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.--|.|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999999865
No 418
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.76 E-value=0.13 Score=44.64 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
--|.|+|.+|+|||||...+...
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999998764
No 419
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=90.75 E-value=0.11 Score=48.81 Aligned_cols=20 Identities=35% Similarity=0.695 Sum_probs=18.2
Q ss_pred EEEEccCCCcHHHHHHHHHc
Q 046770 227 VSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 227 v~I~G~gGiGKTtLA~~v~~ 246 (475)
|+|+|..|+|||||.+.++.
T Consensus 21 I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 48999999999999999775
No 420
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=90.70 E-value=0.14 Score=52.12 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=21.3
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHc
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
...+|.++|++|.||||+|+.+..
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~ 57 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTR 57 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999976
No 421
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.69 E-value=0.13 Score=43.57 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=20.6
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.--|.|+|.+|+|||||...+...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 346789999999999999998764
No 422
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=90.66 E-value=0.13 Score=45.76 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.0
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 046770 226 VVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 226 vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
-|.|+|.+|+|||+|+..+.++
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 3678999999999999998764
No 423
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=90.66 E-value=0.13 Score=44.85 Aligned_cols=25 Identities=36% Similarity=0.472 Sum_probs=21.3
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
...-|.|+|.+|+|||||...+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3456889999999999999998764
No 424
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=90.65 E-value=0.18 Score=50.04 Aligned_cols=100 Identities=12% Similarity=0.117 Sum_probs=56.6
Q ss_pred HHHHHHhcCCCCCCCCCccEEEEEEccCCCcHHHHHHHHHcCcccccC--cCeEEEEEecCCC-CHHHHHHHHHHHhhcC
Q 046770 206 EIVELLLKEDGTSHNNNHFSVVSIIGMGGLGKTTLAQLVYNDSRVQCH--FDLKAWTYVSQDF-DIIRVTKSILRSVAMG 282 (475)
Q Consensus 206 ~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~--F~~~~wv~v~~~~-~~~~~l~~il~~l~~~ 282 (475)
+.++.|.....+ .-++|.|..|+|||+|+..++++...... =+.++++-+.+.. .+.+++..+...-...
T Consensus 141 r~ID~l~pigrG-------Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~ 213 (469)
T 2c61_A 141 STIDGTNTLVRG-------QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALE 213 (469)
T ss_dssp HHHHTTSCCBTT-------CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGG
T ss_pred EeeeeeeccccC-------CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCcc
Confidence 357766653322 23577899999999999999885433211 1356777777654 3455666665431111
Q ss_pred C-------CCCCChH-----HHHHHHHHHh---CCceEEEEEECC
Q 046770 283 I-------VDHNDLN-----LLQWKLKKQL---FGKRFLLVLDDV 312 (475)
Q Consensus 283 ~-------~~~~~~~-----~l~~~l~~~l---~~kr~LlVlDdv 312 (475)
. .+..... ...-.+.+++ +|+.+||++||+
T Consensus 214 rtvvV~~tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 214 RAVVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp GEEEEEEETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 1 1111111 1111233333 478999999997
No 425
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=90.65 E-value=0.13 Score=45.25 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
--|.|+|.+|+|||||+..+...
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999999865
No 426
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=90.63 E-value=0.25 Score=42.48 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=25.2
Q ss_pred EEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCC
Q 046770 227 VSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFD 267 (475)
Q Consensus 227 v~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~ 267 (475)
+.|+|.+|+||||+|.++... . ..++++.....++
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~---~---~~~~yiaT~~~~d 36 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD---A---PQVLYIATSQILD 36 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS---C---SSEEEEECCCC--
T ss_pred EEEECCCCCcHHHHHHHHHhc---C---CCeEEEecCCCCC
Confidence 689999999999999999863 1 2356666655554
No 427
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=90.62 E-value=0.15 Score=47.43 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=19.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
++|+|.|-||+||||+|..++..
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~ 25 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAA 25 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEeCCCcCcHHHHHHHHHHH
Confidence 67888999999999999888753
No 428
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=90.61 E-value=0.14 Score=43.88 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=21.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDS 248 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~ 248 (475)
.-|.|+|.+|+|||||...+.+..
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 567899999999999999998653
No 429
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.60 E-value=0.14 Score=49.38 Aligned_cols=113 Identities=13% Similarity=0.085 Sum_probs=59.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCce
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKR 304 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr 304 (475)
.+++|+|+.|+|||||.+.+..... ......+ +.+.++.... .... ...........+.......|...|...+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~--~~~~~~i-~t~ed~~e~~--~~~~-~~~v~q~~~~~~~~~~~~~La~aL~~~P 197 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLN--NTKYHHI-LTIEDPIEFV--HESK-KCLVNQREVHRDTLGFSEALRSALREDP 197 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHH--HHCCCEE-EEEESSCCSC--CCCS-SSEEEEEEBTTTBSCHHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHhccc--CCCCcEE-EEccCcHHhh--hhcc-ccceeeeeeccccCCHHHHHHHHhhhCc
Confidence 4899999999999999998866321 1111111 1222211100 0000 0000000001111223447888888888
Q ss_pred EEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCChHHHHh
Q 046770 305 FLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNADAALI 348 (475)
Q Consensus 305 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~ 348 (475)
=+|++|+.. +.+.+..+.... ..|..||+|+...+....
T Consensus 198 dvillDEp~--d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~~ 236 (356)
T 3jvv_A 198 DIILVGEMR--DLETIRLALTAA---ETGHLVFGTLHTTSAAKT 236 (356)
T ss_dssp SEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEESCSSHHHH
T ss_pred CEEecCCCC--CHHHHHHHHHHH---hcCCEEEEEEccChHHHH
Confidence 899999995 344555443332 236678889887665543
No 430
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.57 E-value=0.13 Score=50.09 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+++|+|+.|+|||||.+.+..
T Consensus 48 e~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHhC
Confidence 4899999999999999999975
No 431
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=90.53 E-value=0.14 Score=45.13 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=20.4
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
...|.|+|.+|+|||||...+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356789999999999999998764
No 432
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=90.53 E-value=0.13 Score=44.39 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=20.6
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.--|+|+|.+|+|||||...+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 345789999999999999999764
No 433
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.53 E-value=0.13 Score=44.99 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=21.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
...-|.|+|.+|+|||||...+.+.
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3456789999999999999988754
No 434
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=90.52 E-value=0.14 Score=44.35 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.--|+|+|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345789999999999999999875
No 435
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=90.50 E-value=0.14 Score=44.06 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
--|.|+|.+|+|||||...+.+.
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999999864
No 436
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=90.49 E-value=0.13 Score=46.07 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHHc
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.--++|.|++|+||||+|+.+.+
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHH
Confidence 34689999999999999999876
No 437
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=90.48 E-value=0.14 Score=44.01 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.--|.|+|.+|+|||||...+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999998765
No 438
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=90.47 E-value=0.15 Score=44.36 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=19.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
--|.|+|.+|+|||||...+.+.
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999998864
No 439
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=90.47 E-value=0.19 Score=43.71 Aligned_cols=25 Identities=32% Similarity=0.577 Sum_probs=21.1
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
...-|.|+|.+|+|||||...+...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3456789999999999999998754
No 440
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=90.45 E-value=0.16 Score=48.62 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=21.6
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHc
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+..+++|+|.+|+|||||+..+..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3457899999999999999998864
No 441
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=90.42 E-value=0.14 Score=44.54 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=20.1
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.--|.|+|.+|+|||||...+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456789999999999999998764
No 442
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=90.41 E-value=0.16 Score=49.96 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCcHHHHHHHHHc
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
..+++|+|+.|+|||||.+.+..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHhC
Confidence 36899999999999999999987
No 443
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.41 E-value=0.12 Score=49.95 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.+++|+|+.|+|||||++.+...
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 47899999999999999999874
No 444
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=90.39 E-value=0.14 Score=44.16 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=20.7
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.--|.|+|.+|+|||||...+.+.
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 345789999999999999999875
No 445
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=90.38 E-value=0.14 Score=44.06 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=20.4
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.--|.|+|.+|+|||||...+.+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 345789999999999999998764
No 446
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=90.37 E-value=0.14 Score=44.61 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..-|.|+|.+|+|||||...+.+.
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 356789999999999999999865
No 447
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=90.34 E-value=0.14 Score=44.41 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
--|.|+|.+|+|||||...+...
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhC
Confidence 45889999999999999999754
No 448
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=90.33 E-value=0.15 Score=43.57 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
--|.|+|..|+|||||...+...
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999864
No 449
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=90.31 E-value=0.15 Score=45.09 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=19.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
--|.|+|.+|+|||||...+..
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4578999999999999999874
No 450
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=90.31 E-value=0.16 Score=47.64 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=22.1
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
+...|+|+|.+|+|||||...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4568999999999999999999764
No 451
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=90.31 E-value=0.15 Score=44.00 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=21.4
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..--|.|+|..|+|||||...+..+
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3456889999999999999999865
No 452
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=90.27 E-value=0.15 Score=44.79 Aligned_cols=22 Identities=18% Similarity=0.143 Sum_probs=20.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+|.|.|+.|+||||+++.++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~ 28 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAE 28 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 453
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=90.25 E-value=0.15 Score=45.95 Aligned_cols=48 Identities=17% Similarity=0.191 Sum_probs=30.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHH
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSI 275 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~i 275 (475)
.++.|.|.+|+|||+||.+++.+.. ...-..+++++... +...+...+
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~-~~~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGA-EEYGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH-HHHCCCEEEEESSS--CHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHH-HhcCCCceeecccC--CHHHHHHHH
Confidence 5889999999999999988764321 12223455655543 444554443
No 454
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=90.21 E-value=0.15 Score=44.32 Aligned_cols=24 Identities=13% Similarity=0.270 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..-|.|+|.+|+|||||...+...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 456789999999999999998764
No 455
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.20 E-value=0.14 Score=44.13 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
--|.|+|.+|+|||||...+.+.
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 45789999999999999998763
No 456
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=90.19 E-value=0.2 Score=45.16 Aligned_cols=25 Identities=16% Similarity=0.315 Sum_probs=21.7
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
....|+|+|.+|+|||||...+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 3467889999999999999999875
No 457
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=90.19 E-value=0.15 Score=43.76 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=20.6
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..-|.|+|..|+|||||...+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 356789999999999999998754
No 458
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=90.18 E-value=0.14 Score=44.25 Aligned_cols=23 Identities=43% Similarity=0.585 Sum_probs=19.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
--|.|+|..|+|||||...+..+
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999998764
No 459
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.17 E-value=0.23 Score=50.12 Aligned_cols=25 Identities=4% Similarity=-0.056 Sum_probs=22.1
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
...+|.+.|+.|+||||+|+.+...
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~ 418 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLST 418 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHH
T ss_pred cceEEEecccCCCCHHHHHHHHHHH
Confidence 3468999999999999999999884
No 460
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=90.15 E-value=0.34 Score=46.49 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=20.8
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHc
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
...+++.+.|-||+||||+|..++.
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~ 40 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAV 40 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Confidence 3457999999999999999977653
No 461
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=90.14 E-value=0.16 Score=44.91 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=19.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
--|.|+|.+|+|||||...+.+.
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 45789999999999999999764
No 462
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.12 E-value=0.15 Score=43.44 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=20.6
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..-|.|+|.+|+|||||...+...
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 356789999999999999998754
No 463
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=90.02 E-value=0.2 Score=47.16 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=23.3
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.....|+|+|.+|+|||||...+...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 56789999999999999999998764
No 464
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=90.01 E-value=0.16 Score=43.65 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
--|.|+|.+|+|||||...+.+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46789999999999999999764
No 465
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=89.99 E-value=0.19 Score=42.70 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=19.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.-|.|.|.+|+||||||..+..
T Consensus 17 ~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999998876
No 466
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=89.98 E-value=0.39 Score=45.76 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=20.4
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHc
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
..+++.+.|-||+||||+|..++.
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~ 38 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAI 38 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEEeCCCCccHHHHHHHHHH
Confidence 357888999999999999987754
No 467
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=89.97 E-value=0.16 Score=44.42 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=21.2
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..--|.|+|.+|+|||||...+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 3456789999999999999998764
No 468
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.96 E-value=0.15 Score=44.07 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=20.5
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.--|.|+|.+|+|||||...+...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 346789999999999999998764
No 469
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=89.93 E-value=0.15 Score=48.88 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=21.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.+++|+|+.|+|||||.+.+.+.
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999884
No 470
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=89.93 E-value=0.26 Score=43.39 Aligned_cols=23 Identities=35% Similarity=0.548 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..|+|-|..|+||||+++.+.+.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~ 25 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHR 25 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHH
Confidence 47889999999999999998874
No 471
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=89.89 E-value=0.2 Score=46.16 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999764
No 472
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=89.89 E-value=0.21 Score=41.42 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=18.9
Q ss_pred EEEEEEccCCCcHHHHHHHHH
Q 046770 225 SVVSIIGMGGLGKTTLAQLVY 245 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~ 245 (475)
.+..|+|+.|.|||||...++
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 578999999999999998875
No 473
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=89.83 E-value=0.14 Score=52.33 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=21.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.++.|+|+.|+|||||++.+...
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHh
Confidence 68999999999999999999873
No 474
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.63 E-value=0.17 Score=43.57 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
--|.|+|.+|+|||||...+.+.
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999865
No 475
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.60 E-value=0.17 Score=44.25 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.-|.|+|.+|+|||||...+...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 46789999999999999998864
No 476
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=89.60 E-value=0.16 Score=49.96 Aligned_cols=21 Identities=38% Similarity=0.707 Sum_probs=19.4
Q ss_pred EEEEccCCCcHHHHHHHHHcC
Q 046770 227 VSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 227 v~I~G~gGiGKTtLA~~v~~~ 247 (475)
++|+|+.|+|||||.+.++..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 899999999999999998763
No 477
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=89.53 E-value=0.19 Score=50.45 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=21.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..+|.++|++|+||||+++.+...
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999998763
No 478
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=89.53 E-value=0.18 Score=44.01 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=21.2
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
..--|.|+|.+|+|||||+..+.+.
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhhC
Confidence 3456889999999999999998764
No 479
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=89.51 E-value=0.14 Score=48.94 Aligned_cols=106 Identities=13% Similarity=0.021 Sum_probs=54.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEecCCCCHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhCCce
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYVSQDFDIIRVTKSILRSVAMGIVDHNDLNLLQWKLKKQLFGKR 304 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~l~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr 304 (475)
.+++|+|+.|+|||||++.+..-... -...+.+.-......... . +.+.. ..+ ........+...|..++
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~---~~g~i~i~~~~e~~~~~~-~---~~i~~-~~g--gg~~~r~~la~aL~~~p 241 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK---EERIISIEDTEEIVFKHH-K---NYTQL-FFG--GNITSADCLKSCLRMRP 241 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT---TSCEEEEESSCCCCCSSC-S---SEEEE-ECB--TTBCHHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC---CCcEEEECCeeccccccc-h---hEEEE-EeC--CChhHHHHHHHHhhhCC
Confidence 47899999999999999999873211 123444332111110000 0 00000 000 11223345667777788
Q ss_pred EEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCChHH
Q 046770 305 FLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRNADA 345 (475)
Q Consensus 305 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v 345 (475)
=+|++|++... +.++.+ ..+..+ +..+|+||...+.
T Consensus 242 ~ilildE~~~~--e~~~~l-~~~~~g--~~tvi~t~H~~~~ 277 (330)
T 2pt7_A 242 DRIILGELRSS--EAYDFY-NVLCSG--HKGTLTTLHAGSS 277 (330)
T ss_dssp SEEEECCCCST--HHHHHH-HHHHTT--CCCEEEEEECSSH
T ss_pred CEEEEcCCChH--HHHHHH-HHHhcC--CCEEEEEEcccHH
Confidence 89999998552 334333 333221 2236666665443
No 480
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=89.50 E-value=0.18 Score=44.26 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=20.5
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.--|.|+|.+|+|||||...+.+.
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999998764
No 481
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=89.44 E-value=0.21 Score=44.03 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=20.7
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.--|.|+|.+|+|||||...+...
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 346789999999999999999864
No 482
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=89.44 E-value=0.21 Score=51.41 Aligned_cols=26 Identities=15% Similarity=0.146 Sum_probs=22.5
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
+...+|.|.|++|+||||+|+.+...
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~ 419 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVT 419 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999873
No 483
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=89.37 E-value=0.14 Score=44.05 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=20.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDS 248 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~ 248 (475)
--|.|+|.+|+|||||...+....
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999987653
No 484
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=89.35 E-value=0.12 Score=44.18 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=10.2
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcC
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.--|.|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999988754
No 485
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=89.34 E-value=0.19 Score=43.79 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
--|.|+|.+|+|||||...+..+
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999998764
No 486
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=89.33 E-value=0.19 Score=44.34 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=20.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
--|.|+|.+|+|||||...+...
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 45779999999999999998764
No 487
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=89.33 E-value=0.4 Score=45.07 Aligned_cols=26 Identities=12% Similarity=0.300 Sum_probs=23.0
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 222 NHFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 222 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.....|+|+|..|+|||||...+...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 45678999999999999999999764
No 488
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=89.24 E-value=0.15 Score=45.06 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=22.1
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcCc
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYNDS 248 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 248 (475)
....|+|+|..|+|||||...+....
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 34578899999999999999998753
No 489
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=89.19 E-value=0.15 Score=50.90 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.+++|+|+.|+|||||++.++.-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 47999999999999999998764
No 490
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=89.15 E-value=0.24 Score=51.36 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.6
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHc
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
...+|.|.|++|+||||+|+.+..
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~ 74 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEE 74 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHH
Confidence 447899999999999999999877
No 491
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=89.14 E-value=0.23 Score=43.91 Aligned_cols=106 Identities=8% Similarity=0.047 Sum_probs=49.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccCcCeEEEEEe-cCCCCHHHHHHHHHHHhhcCCC--CCCChHHHHHHHHHHhC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYNDSRVQCHFDLKAWTYV-SQDFDIIRVTKSILRSVAMGIV--DHNDLNLLQWKLKKQLF 301 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v-~~~~~~~~~l~~il~~l~~~~~--~~~~~~~l~~~l~~~l~ 301 (475)
.+..++|.-|.||||.+.......... .....++-.. ...+.... +...++.... ...+.. .+.+.+.
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~-g~kVli~k~~~d~R~ge~~----i~s~~g~~~~a~~~~~~~----~~~~~~~ 99 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFA-KQHAIVFKPCIDNRYSEED----VVSHNGLKVKAVPVSASK----DIFKHIT 99 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHT-TCCEEEEECC---------------------CCEEECSSGG----GGGGGCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEeccCCcchHHH----HHhhcCCeeEEeecCCHH----HHHHHHh
Confidence 688899999999999987776643222 2333332211 11112222 3333322211 111111 1222233
Q ss_pred CceEEEEEECCCCCChhhHhHhhCcCCCCCCCcEEEEecCC
Q 046770 302 GKRFLLVLDDVWNENYNDWIDLSRPFQDGAPGSKIIITTRN 342 (475)
Q Consensus 302 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 342 (475)
++--+|++|++.--+.+..+.+ ..+.+ .|..||+|.++
T Consensus 100 ~~~dvViIDEaQF~~~~~V~~l-~~l~~--~~~~Vi~~Gl~ 137 (214)
T 2j9r_A 100 EEMDVIAIDEVQFFDGDIVEVV-QVLAN--RGYRVIVAGLD 137 (214)
T ss_dssp SSCCEEEECCGGGSCTTHHHHH-HHHHH--TTCEEEEEECS
T ss_pred cCCCEEEEECcccCCHHHHHHH-HHHhh--CCCEEEEEecc
Confidence 3333999999965443344333 22222 36789999985
No 492
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=89.13 E-value=0.24 Score=47.82 Aligned_cols=22 Identities=23% Similarity=0.489 Sum_probs=18.9
Q ss_pred ccEEEEEEccCCCcHHHHHHHH
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLV 244 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v 244 (475)
+..-|.|.|.||+||||+++++
T Consensus 32 ~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 32 RLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCEEEEEECSTTSSHHHHHHHH
T ss_pred CccEEEEECCCCCcHHHHHHHH
Confidence 3456789999999999999886
No 493
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=89.04 E-value=0.28 Score=42.94 Aligned_cols=24 Identities=17% Similarity=0.119 Sum_probs=21.2
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHc
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
...+|+|+|++|+||+|+|..+.+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHH
Confidence 457999999999999999988765
No 494
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=88.89 E-value=0.46 Score=43.63 Aligned_cols=25 Identities=20% Similarity=0.499 Sum_probs=21.5
Q ss_pred cEEEEEEccCCCcHHHHHHHHHcCc
Q 046770 224 FSVVSIIGMGGLGKTTLAQLVYNDS 248 (475)
Q Consensus 224 ~~vv~I~G~gGiGKTtLA~~v~~~~ 248 (475)
...|.++|.+|+|||||...+....
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578899999999999999998753
No 495
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=88.82 E-value=0.2 Score=49.37 Aligned_cols=21 Identities=33% Similarity=0.662 Sum_probs=19.1
Q ss_pred EEEEccCCCcHHHHHHHHHcC
Q 046770 227 VSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 227 v~I~G~gGiGKTtLA~~v~~~ 247 (475)
|+|+|..|+|||||.+.++..
T Consensus 34 I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 599999999999999999864
No 496
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=88.79 E-value=0.28 Score=44.71 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=21.4
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
....|+|+|.+|+|||||...+...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 3457889999999999999999764
No 497
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=88.67 E-value=0.23 Score=49.74 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYN 246 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~ 246 (475)
.+++|+|+.|+|||||.+.+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 6899999999999999998864
No 498
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=88.61 E-value=0.27 Score=46.13 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=22.0
Q ss_pred ccEEEEEEccCCCcHHHHHHHHHcC
Q 046770 223 HFSVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 223 ~~~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
+...|+|+|.+|+|||||...+...
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999864
No 499
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=88.61 E-value=0.17 Score=43.40 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
--|.|+|.+|+|||||...+..+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999998654
No 500
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=88.45 E-value=0.22 Score=50.81 Aligned_cols=23 Identities=35% Similarity=0.795 Sum_probs=20.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 046770 225 SVVSIIGMGGLGKTTLAQLVYND 247 (475)
Q Consensus 225 ~vv~I~G~gGiGKTtLA~~v~~~ 247 (475)
.+++|+|+.|+|||||++.++.-
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999863
Done!