BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046771
(326 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q28EG9|ZMAT1_XENTR Zinc finger matrin-type protein 1 OS=Xenopus tropicalis GN=zmat1
PE=2 SV=1
Length = 553
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Query: 208 GSGELPSKSSNKPTKWSCALCQVSATTARGLYAHLQGKKHKAKEKLLRDLKMFIISTSKK 267
G+G S+ S+ ++ C +C ++ T+ +H+QG KH+ KE ++ +L + TSKK
Sbjct: 262 GTGVADSEVSD--GRYVCPICNITLTSIEMYQSHMQGNKHQIKESMVANL----MKTSKK 315
Query: 268 STES 271
+ +S
Sbjct: 316 NYDS 319
>sp|Q86UP3|ZFHX4_HUMAN Zinc finger homeobox protein 4 OS=Homo sapiens GN=ZFHX4 PE=1 SV=1
Length = 3567
Score = 35.4 bits (80), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 213 PSKSSNKPTKWSCALCQVSATTARGLYAHLQGKKHKAKEKLLR 255
PSK KPT W C +C AR L H+ +KH LL+
Sbjct: 758 PSKPKQKPT-WRCEVCDYETNVARNLRIHMTSEKHMHNMMLLQ 799
>sp|O73590|ZFHX4_CHICK Zinc finger homeobox protein 4 OS=Gallus gallus GN=ZFHX4 PE=2 SV=2
Length = 3573
Score = 35.4 bits (80), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 213 PSKSSNKPTKWSCALCQVSATTARGLYAHLQGKKHKAKEKLLR 255
PSK KPT W C +C AR L H+ +KH LL+
Sbjct: 754 PSKPKQKPT-WRCEVCDYETNVARNLRIHMTSEKHMHNMMLLQ 795
>sp|Q5H9K5|ZMAT1_HUMAN Zinc finger matrin-type protein 1 OS=Homo sapiens GN=ZMAT1 PE=2
SV=1
Length = 638
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 206 AAGSGELPSKSSNKPTKWSCALCQVSATTARGLYAHLQGKKHKAKEKLLRDLKMFIISTS 265
A+ SG P + + T + C +C ++ T+ +H+QG +H+ KE + +I+
Sbjct: 159 ASPSGFQPEMAFSMRT-YVCHICSIAFTSLDMFRSHMQGSEHQIKESI-------VINLV 210
Query: 266 KKSTESRDSGGHEMKTKVQKESVKG 290
K S +++DS +E + + +G
Sbjct: 211 KNSRKTQDSYQNECADYINVQKARG 235
>sp|Q15911|ZFHX3_HUMAN Zinc finger homeobox protein 3 OS=Homo sapiens GN=ZFHX3 PE=1 SV=2
Length = 3703
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 213 PSKSSNKPTKWSCALCQVSATTARGLYAHLQGKKHKAKEKLLR 255
P+K KPT W C +C AR L H+ +KH LL+
Sbjct: 795 PTKPKTKPT-WRCEVCDYETNVARNLRIHMTSEKHMHNMMLLQ 836
>sp|Q61329|ZFHX3_MOUSE Zinc finger homeobox protein 3 OS=Mus musculus GN=Zfhx3 PE=1 SV=1
Length = 3726
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 213 PSKSSNKPTKWSCALCQVSATTARGLYAHLQGKKHKAKEKLLR 255
P+K KPT W C +C AR L H+ +KH LL+
Sbjct: 796 PTKPKTKPT-WRCEVCDYETNVARNLRIHMTSEKHMHNMMLLQ 837
>sp|Q6PCR6|ZFR_DANRE Zinc finger RNA-binding protein OS=Danio rerio GN=zfr PE=2 SV=2
Length = 1074
Score = 33.1 bits (74), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 21/40 (52%)
Query: 225 CALCQVSATTARGLYAHLQGKKHKAKEKLLRDLKMFIIST 264
C LC VS T A AH++G KH+ KL L I ST
Sbjct: 380 CELCDVSCTGADAYAAHIRGAKHQKVVKLHTKLGKPIPST 419
Score = 31.2 bits (69), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 225 CALCQVSATTARGLYAHLQGKKHKAKEKLLR 255
C +C++S + HL+G+KHK KE L+
Sbjct: 326 CDVCKISCAGPQTYKEHLEGQKHKKKEAALK 356
>sp|O88532|ZFR_MOUSE Zinc finger RNA-binding protein OS=Mus musculus GN=Zfr PE=1 SV=2
Length = 1074
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 21/40 (52%)
Query: 225 CALCQVSATTARGLYAHLQGKKHKAKEKLLRDLKMFIIST 264
C LC VS T A AH++G KH+ KL L I ST
Sbjct: 384 CELCDVSCTGADAYAAHIRGAKHQKVVKLHTKLGKPIPST 423
>sp|Q5REX3|ZFR_PONAB Zinc finger RNA-binding protein OS=Pongo abelii GN=ZFR PE=2 SV=1
Length = 1074
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 21/40 (52%)
Query: 225 CALCQVSATTARGLYAHLQGKKHKAKEKLLRDLKMFIIST 264
C LC VS T A AH++G KH+ KL L I ST
Sbjct: 384 CELCDVSCTGADAYAAHIRGAKHQKVVKLHTKLGKPIPST 423
>sp|Q96KR1|ZFR_HUMAN Zinc finger RNA-binding protein OS=Homo sapiens GN=ZFR PE=1 SV=2
Length = 1074
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 21/40 (52%)
Query: 225 CALCQVSATTARGLYAHLQGKKHKAKEKLLRDLKMFIIST 264
C LC VS T A AH++G KH+ KL L I ST
Sbjct: 384 CELCDVSCTGADAYAAHIRGAKHQKVVKLHTKLGKPIPST 423
>sp|Q3MHT4|STPAP_RAT Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Rattus
norvegicus GN=Tut1 PE=2 SV=1
Length = 866
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 222 KWSCALCQVSATTARGLYAHLQGKKHKAKEKLLRDLKMFIISTSKKSTESRDSGGHEMKT 281
++ C LC V+ L AHL+G+KH+ +L K + + S RD G ++
Sbjct: 15 RFRCCLCDVTTANRPSLDAHLKGRKHRDLVQLRATRKAQGLRSVFVSGFPRDVGSAQLSE 74
Query: 282 KVQKESVKGNKTVVDLDQKV 301
Q N V+D D+ V
Sbjct: 75 YFQTFGPVAN-IVMDKDKGV 93
>sp|Q8R3F9|STPAP_MOUSE Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Mus
musculus GN=Tut1 PE=1 SV=1
Length = 869
Score = 33.1 bits (74), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 222 KWSCALCQVSATTARGLYAHLQGKKHKAKEKLLRDLKMFIISTSKKSTESRDSGGHEMKT 281
++ C LC V+ L AHL+G+KH+ +L K + + S RD G ++
Sbjct: 15 RFRCCLCDVTTANRPSLDAHLKGRKHRDLVQLRATRKAQGLRSVFVSGFPRDVGSAQLSE 74
Query: 282 KVQKESVKGNKTVVDLDQKV 301
Q N V+D D+ V
Sbjct: 75 YFQTFGPVAN-IVMDKDKGV 93
>sp|Q5U231|ZFR_XENTR Zinc finger RNA-binding protein OS=Xenopus tropicalis GN=zfr PE=2
SV=1
Length = 1065
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 21/40 (52%)
Query: 225 CALCQVSATTARGLYAHLQGKKHKAKEKLLRDLKMFIIST 264
C LC VS T A AH++G KH+ KL L I ST
Sbjct: 384 CELCDVSCTGADAYAAHIRGAKHQKVVKLHTKLGKPIPST 423
>sp|Q6GPM1|ZFR_XENLA Zinc finger RNA-binding protein OS=Xenopus laevis GN=zfr PE=2 SV=1
Length = 1054
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 21/40 (52%)
Query: 225 CALCQVSATTARGLYAHLQGKKHKAKEKLLRDLKMFIIST 264
C LC VS T A AH++G KH+ KL L I ST
Sbjct: 375 CELCDVSCTGADAYAAHIRGAKHQKVVKLHTKLGKPIPST 414
>sp|Q9CBT5|SMC_MYCLE Chromosome partition protein Smc OS=Mycobacterium leprae (strain
TN) GN=smc PE=3 SV=1
Length = 1203
Score = 32.7 bits (73), Expect = 3.7, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 57/138 (41%), Gaps = 13/138 (9%)
Query: 13 YIARRQHALTFLSQSMESKFGRIDDRTVPSPSSPSPSSRSSSYSSDDQARRGNYSMVPDL 72
Y R++ AL L +M + R+ D T P SR + + ARR + +
Sbjct: 170 YRRRKEKALRKLD-AMSANLARLTDLTTELRRQLKPLSRQA-----EVARRA--ATIQAD 221
Query: 73 LNNPRLLYTLQREIEKEIIRREIIAAEIERRRLPEEEASRELMIEREMAMHRAREMGLSI 132
L + RL + ++ R I+ AE RR +E A+R + E+A H A LS
Sbjct: 222 LRDARLRLAADDLVSRQGQRDAIVEAETMMRRDHDEAAARLAVASEELAAHEAALTELSG 281
Query: 133 DDRLLMQLHTMYPWFPFS 150
+ Q+ WF S
Sbjct: 282 RAESVQQI-----WFGLS 294
>sp|Q6GQ81|MID49_XENLA Mitochondrial dynamic protein MID49 OS=Xenopus laevis GN=smcr7 PE=2
SV=1
Length = 463
Score = 32.7 bits (73), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 119 EMAMHRAREMGLSIDDRLLMQLHTMYPWFPF-SRNLGLGFGNDVLPSTLPH 168
E+ M AR++ L I L LH +P PF + +LG FGN + S L H
Sbjct: 150 EVQMEEARQLVLDIKKELQEFLHAKHPEMPFLALHLGGSFGNRLPMSCLDH 200
>sp|Q562A2|ZFR_RAT Zinc finger RNA-binding protein OS=Rattus norvegicus GN=Zfr PE=1
SV=2
Length = 1073
Score = 32.7 bits (73), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 21/40 (52%)
Query: 225 CALCQVSATTARGLYAHLQGKKHKAKEKLLRDLKMFIIST 264
C LC VS T A AH++G KH+ KL L I ST
Sbjct: 382 CRLCDVSCTGADAYAAHIRGAKHQKVVKLHTKLGKPIPST 421
>sp|Q55D16|KIN17_DICDI KIN17-like protein OS=Dictyostelium discoideum GN=DDB_G0269816 PE=3
SV=1
Length = 445
Score = 32.3 bits (72), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 202 AATPAAGSGELPSKSSNKPTKWSCALCQVSATTARGLYAHLQGKKHKAKEKLLRDLKMFI 261
A TP + ++ +K + +W C LC+ G H+ + H + ++ + FI
Sbjct: 6 ALTPKQIANKIKAKGLQR-LRWYCQLCEKQCRDENGFKCHISSESHMRQMEVFSNKSSFI 64
Query: 262 ISTSKKSTE 270
+S K E
Sbjct: 65 VSQYSKEFE 73
>sp|Q9Y7X9|KIN17_SCHPO KIN17-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=SPBC365.09c PE=3 SV=1
Length = 304
Score = 32.0 bits (71), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 201 KAATPAAGSGELPSKSSNKPTKWSCALCQVSATTARGLYAHLQGKKH 247
+A TP A S L SK + +W C+ CQ G H Q + H
Sbjct: 5 EAGTPKAISNALKSKGLQR-LRWYCSACQKQMRDENGFKCHTQSEGH 50
>sp|Q0IIC4|ZMAT3_BOVIN Zinc finger matrin-type protein 3 OS=Bos taurus GN=ZMAT3 PE=2 SV=1
Length = 289
Score = 31.6 bits (70), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 200 QKAATPAAGSGELPSKSSNKPTKWS-------CALCQVSATTARGLYAHLQGKKHKAK 250
Q+A+ P AG E P K + T C LC V+ +A+ AH QGK H K
Sbjct: 41 QEASLPLAGEEE-PPKGGEQDTALEELCKPLYCKLCNVTLNSAQQAQAHYQGKNHGKK 97
>sp|O95477|ABCA1_HUMAN ATP-binding cassette sub-family A member 1 OS=Homo sapiens GN=ABCA1
PE=1 SV=3
Length = 2261
Score = 31.2 bits (69), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 238 LYAHLQG--KKHKAKEKLLRDLKMFIISTSKKSTESRDSGGHEMKTKVQKESVKGNKTVV 295
YA L+G +KH E L + + S+ KS S+ SGG + K V V G+K V+
Sbjct: 996 FYARLKGLSEKHVKAEMEQMALDVGLPSSKLKSKTSQLSGGMQRKLSVALAFVGGSKVVI 1055
Query: 296 DLDQKVKGGLDGHSQR 311
LD+ G+D +S+R
Sbjct: 1056 -LDEP-TAGVDPYSRR 1069
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.128 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,123,298
Number of Sequences: 539616
Number of extensions: 5086484
Number of successful extensions: 16245
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 16080
Number of HSP's gapped (non-prelim): 217
length of query: 326
length of database: 191,569,459
effective HSP length: 118
effective length of query: 208
effective length of database: 127,894,771
effective search space: 26602112368
effective search space used: 26602112368
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)