Query 046773
Match_columns 453
No_of_seqs 313 out of 1155
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 04:20:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046773.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046773hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0281 Beta-TrCP (transducin 100.0 6.4E-59 1.4E-63 448.0 17.7 366 37-452 66-477 (499)
2 KOG0274 Cdc4 and related F-box 100.0 3.5E-47 7.5E-52 403.0 30.5 365 34-452 96-482 (537)
3 KOG0271 Notchless-like WD40 re 100.0 5.5E-42 1.2E-46 334.3 23.2 279 137-452 112-439 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 3.8E-41 8.2E-46 332.1 23.2 267 147-450 178-458 (459)
5 KOG0271 Notchless-like WD40 re 100.0 1E-39 2.2E-44 318.5 22.8 285 119-450 139-479 (480)
6 KOG0295 WD40 repeat-containing 100.0 1.7E-37 3.7E-42 301.5 24.5 273 138-451 106-405 (406)
7 KOG0279 G protein beta subunit 100.0 2.6E-35 5.6E-40 278.3 29.3 274 137-452 12-313 (315)
8 KOG0315 G-protein beta subunit 100.0 2.4E-35 5.1E-40 274.7 27.4 260 155-453 11-289 (311)
9 KOG0281 Beta-TrCP (transducin 100.0 3.2E-37 7E-42 297.9 10.6 225 192-453 197-429 (499)
10 KOG0285 Pleiotropic regulator 100.0 7.8E-34 1.7E-38 275.5 25.3 271 137-450 148-437 (460)
11 KOG0272 U4/U6 small nuclear ri 100.0 1.6E-33 3.4E-38 278.2 18.3 246 122-410 202-458 (459)
12 KOG0274 Cdc4 and related F-box 100.0 5.2E-32 1.1E-36 287.4 26.2 254 137-436 246-506 (537)
13 KOG0286 G-protein beta subunit 100.0 2.4E-30 5.1E-35 246.0 31.4 272 137-450 52-343 (343)
14 KOG0266 WD40 repeat-containing 100.0 8.9E-31 1.9E-35 275.6 30.1 269 147-452 162-454 (456)
15 KOG0313 Microtubule binding pr 100.0 2.1E-30 4.6E-35 253.3 26.4 280 146-450 107-416 (423)
16 KOG0263 Transcription initiati 100.0 5.2E-31 1.1E-35 276.9 22.1 260 147-452 381-649 (707)
17 KOG0319 WD40-repeat-containing 100.0 3.4E-30 7.4E-35 268.6 26.1 287 139-452 104-577 (775)
18 cd00200 WD40 WD40 domain, foun 100.0 4E-28 8.6E-33 229.5 35.3 272 138-450 7-289 (289)
19 KOG0319 WD40-repeat-containing 100.0 2.5E-29 5.5E-34 262.1 26.8 275 147-450 326-617 (775)
20 KOG0279 G protein beta subunit 100.0 5.4E-29 1.2E-33 235.5 26.5 239 175-452 6-262 (315)
21 KOG0265 U5 snRNP-specific prot 100.0 2.9E-28 6.3E-33 232.5 27.7 272 138-451 45-337 (338)
22 PLN00181 protein SPA1-RELATED; 100.0 3.2E-27 6.9E-32 264.4 38.0 265 147-451 486-792 (793)
23 KOG0266 WD40 repeat-containing 100.0 1.3E-27 2.8E-32 251.6 29.5 230 194-452 161-409 (456)
24 KOG0295 WD40 repeat-containing 100.0 1.3E-28 2.8E-33 239.8 18.7 230 194-453 110-365 (406)
25 KOG0316 Conserved WD40 repeat- 100.0 2.7E-27 5.8E-32 219.5 23.0 269 147-450 20-297 (307)
26 KOG0292 Vesicle coat complex C 100.0 1.9E-27 4.2E-32 251.3 24.9 270 146-452 11-321 (1202)
27 KOG0286 G-protein beta subunit 100.0 1.5E-26 3.2E-31 220.2 27.7 245 177-451 48-302 (343)
28 KOG0273 Beta-transducin family 100.0 2.3E-26 4.9E-31 230.1 25.7 281 138-452 176-482 (524)
29 KOG0282 mRNA splicing factor [ 100.0 8.1E-28 1.8E-32 241.2 15.3 275 137-450 211-503 (503)
30 KOG0645 WD40 repeat protein [G 100.0 1.6E-25 3.4E-30 211.4 29.4 273 137-452 11-311 (312)
31 KOG0273 Beta-transducin family 100.0 6.4E-26 1.4E-30 226.9 28.3 265 147-452 238-523 (524)
32 KOG0263 Transcription initiati 100.0 3.5E-27 7.6E-32 248.1 20.1 196 138-373 449-651 (707)
33 KOG0291 WD40-repeat-containing 99.9 2.7E-25 5.8E-30 232.4 31.5 273 145-452 266-550 (893)
34 KOG0296 Angio-associated migra 99.9 1.9E-25 4.1E-30 217.9 27.7 274 137-452 61-398 (399)
35 KOG0276 Vesicle coat complex C 99.9 5.6E-26 1.2E-30 233.3 24.9 264 147-446 16-293 (794)
36 KOG0291 WD40-repeat-containing 99.9 1.4E-24 3E-29 227.0 34.3 287 126-451 131-507 (893)
37 KOG0285 Pleiotropic regulator 99.9 6.3E-26 1.4E-30 220.6 19.7 229 194-452 153-389 (460)
38 KOG0268 Sof1-like rRNA process 99.9 3.6E-26 7.7E-31 222.7 16.4 302 99-452 30-345 (433)
39 KOG0306 WD40-repeat-containing 99.9 8.5E-25 1.9E-29 228.5 26.6 283 135-451 368-663 (888)
40 KOG0284 Polyadenylation factor 99.9 1.2E-25 2.5E-30 221.8 15.1 267 147-450 99-378 (464)
41 KOG0316 Conserved WD40 repeat- 99.9 1E-24 2.2E-29 202.4 19.9 235 177-452 10-257 (307)
42 KOG0275 Conserved WD40 repeat- 99.9 3.2E-25 7E-30 213.2 16.8 273 147-450 216-507 (508)
43 KOG0276 Vesicle coat complex C 99.9 5.5E-25 1.2E-29 226.1 18.7 198 147-379 58-265 (794)
44 PLN00181 protein SPA1-RELATED; 99.9 1.6E-23 3.5E-28 234.6 31.9 228 147-411 535-792 (793)
45 KOG0265 U5 snRNP-specific prot 99.9 2.3E-24 4.9E-29 205.9 20.4 229 194-451 49-295 (338)
46 KOG0278 Serine/threonine kinas 99.9 2E-24 4.3E-29 201.9 18.3 271 137-452 11-297 (334)
47 KOG0293 WD40 repeat-containing 99.9 4E-24 8.7E-29 211.1 21.1 273 138-452 222-513 (519)
48 KOG0315 G-protein beta subunit 99.9 4.5E-23 9.7E-28 192.8 25.8 259 123-426 28-302 (311)
49 PTZ00420 coronin; Provisional 99.9 2.6E-22 5.7E-27 214.3 34.5 238 150-420 34-300 (568)
50 cd00200 WD40 WD40 domain, foun 99.9 3.2E-22 7E-27 189.0 30.1 238 178-452 3-249 (289)
51 KOG0306 WD40-repeat-containing 99.9 1E-22 2.2E-27 213.1 28.4 268 147-452 68-484 (888)
52 KOG0301 Phospholipase A2-activ 99.9 5.8E-23 1.3E-27 213.6 24.7 264 137-451 11-287 (745)
53 PTZ00421 coronin; Provisional 99.9 2.6E-22 5.5E-27 212.5 29.8 232 200-452 30-290 (493)
54 PTZ00421 coronin; Provisional 99.9 6.1E-22 1.3E-26 209.6 31.7 243 149-422 27-300 (493)
55 KOG0292 Vesicle coat complex C 99.9 7.4E-23 1.6E-27 216.9 23.8 218 136-380 47-289 (1202)
56 KOG0318 WD40 repeat stress pro 99.9 4.2E-21 9.2E-26 194.6 32.7 286 129-452 179-560 (603)
57 KOG0288 WD40 repeat protein Ti 99.9 2.7E-23 5.8E-28 205.5 16.4 266 147-450 178-459 (459)
58 KOG0300 WD40 repeat-containing 99.9 1.5E-22 3.2E-27 194.6 20.2 293 118-452 127-476 (481)
59 KOG0643 Translation initiation 99.9 3.6E-22 7.9E-27 188.3 22.5 280 138-452 8-317 (327)
60 KOG0640 mRNA cleavage stimulat 99.9 1.9E-22 4.1E-27 193.5 19.9 276 138-450 110-424 (430)
61 KOG0318 WD40 repeat stress pro 99.9 7.4E-21 1.6E-25 192.9 30.7 276 138-452 57-350 (603)
62 KOG0277 Peroxisomal targeting 99.9 4.4E-22 9.4E-27 186.7 19.9 268 148-451 12-308 (311)
63 KOG0282 mRNA splicing factor [ 99.9 4.3E-23 9.3E-28 207.4 13.8 239 176-452 206-462 (503)
64 PTZ00420 coronin; Provisional 99.9 6.9E-21 1.5E-25 203.4 30.6 222 209-452 51-293 (568)
65 KOG0294 WD40 repeat-containing 99.9 1.2E-21 2.5E-26 188.5 22.0 237 133-452 36-281 (362)
66 KOG0308 Conserved WD40 repeat- 99.9 3.4E-22 7.3E-27 206.6 18.7 274 149-451 29-326 (735)
67 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 6.4E-20 1.4E-24 178.7 33.4 258 155-452 2-279 (300)
68 KOG0645 WD40 repeat protein [G 99.9 2.4E-20 5.3E-25 176.4 28.8 235 176-450 6-259 (312)
69 KOG0310 Conserved WD40 repeat- 99.9 4.6E-21 9.9E-26 193.1 24.7 262 147-448 29-305 (487)
70 KOG0301 Phospholipase A2-activ 99.9 3.6E-21 7.7E-26 200.3 22.1 224 144-412 58-288 (745)
71 KOG0305 Anaphase promoting com 99.9 9.7E-21 2.1E-25 196.2 24.0 226 147-451 220-460 (484)
72 KOG0313 Microtubule binding pr 99.9 8E-21 1.7E-25 186.4 21.9 235 193-452 106-376 (423)
73 KOG1446 Histone H3 (Lys4) meth 99.9 2.1E-19 4.5E-24 173.2 31.0 265 147-449 17-300 (311)
74 KOG0283 WD40 repeat-containing 99.9 7.7E-21 1.7E-25 201.9 23.2 280 138-452 265-576 (712)
75 KOG0308 Conserved WD40 repeat- 99.9 1.5E-21 3.2E-26 201.9 17.2 223 202-451 37-284 (735)
76 KOG0278 Serine/threonine kinas 99.9 5.7E-22 1.2E-26 185.5 12.8 243 131-416 52-301 (334)
77 KOG0647 mRNA export protein (c 99.9 3.1E-20 6.6E-25 177.9 23.6 260 143-441 28-311 (347)
78 KOG0296 Angio-associated migra 99.9 1.1E-19 2.5E-24 177.6 22.8 246 138-412 104-398 (399)
79 KOG0284 Polyadenylation factor 99.8 4.8E-21 1E-25 189.3 11.9 228 195-452 99-337 (464)
80 KOG0299 U3 snoRNP-associated p 99.8 1.3E-19 2.8E-24 181.6 21.1 232 138-441 200-443 (479)
81 KOG0288 WD40 repeat protein Ti 99.8 1.3E-20 2.8E-25 186.5 11.8 224 195-452 178-417 (459)
82 KOG0300 WD40 repeat-containing 99.8 1.4E-19 3.1E-24 174.2 18.4 267 154-452 124-428 (481)
83 KOG1446 Histone H3 (Lys4) meth 99.8 3.4E-18 7.3E-23 164.9 27.4 230 194-452 16-262 (311)
84 KOG0275 Conserved WD40 repeat- 99.8 5.5E-20 1.2E-24 177.3 15.1 228 198-450 221-465 (508)
85 KOG1036 Mitotic spindle checkp 99.8 1.8E-18 3.9E-23 166.2 25.3 255 147-441 16-292 (323)
86 KOG0277 Peroxisomal targeting 99.8 1.1E-19 2.5E-24 170.5 16.4 228 147-411 63-308 (311)
87 KOG0310 Conserved WD40 repeat- 99.8 4.8E-19 1E-23 178.6 21.3 227 147-414 71-311 (487)
88 KOG1407 WD40 repeat protein [F 99.8 3.6E-18 7.9E-23 161.0 25.2 266 147-451 23-310 (313)
89 KOG0293 WD40 repeat-containing 99.8 3.8E-19 8.2E-24 176.1 18.4 236 137-412 266-513 (519)
90 KOG2096 WD40 repeat protein [G 99.8 4.6E-18 9.9E-23 164.0 23.9 269 137-449 83-399 (420)
91 KOG0267 Microtubule severing p 99.8 2.5E-20 5.5E-25 194.7 8.4 245 156-443 6-259 (825)
92 KOG0640 mRNA cleavage stimulat 99.8 5.4E-19 1.2E-23 169.8 16.0 203 195-423 115-346 (430)
93 KOG0289 mRNA splicing factor [ 99.8 1.5E-17 3.3E-22 165.8 25.0 269 147-451 222-505 (506)
94 KOG0641 WD40 repeat protein [G 99.8 1.2E-16 2.5E-21 148.1 27.9 279 143-452 31-349 (350)
95 KOG0973 Histone transcription 99.8 2.1E-17 4.6E-22 179.8 25.6 280 138-452 10-355 (942)
96 KOG0299 U3 snoRNP-associated p 99.8 1.4E-17 3E-22 167.1 21.0 246 138-452 140-410 (479)
97 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 4.5E-16 9.7E-21 151.6 31.2 238 147-423 33-290 (300)
98 KOG1332 Vesicle coat complex C 99.8 5.5E-18 1.2E-22 158.5 16.7 223 198-450 19-284 (299)
99 KOG0647 mRNA export protein (c 99.8 5.8E-17 1.3E-21 155.5 22.9 229 192-452 27-281 (347)
100 KOG0643 Translation initiation 99.8 7.3E-17 1.6E-21 152.7 23.1 216 194-441 12-249 (327)
101 KOG0772 Uncharacterized conser 99.8 4.6E-17 1E-21 165.1 22.6 276 138-449 165-484 (641)
102 KOG0641 WD40 repeat protein [G 99.8 5.3E-16 1.1E-20 143.8 26.5 240 147-412 92-349 (350)
103 KOG0267 Microtubule severing p 99.8 9.1E-19 2E-23 183.1 8.9 219 145-401 29-256 (825)
104 KOG0289 mRNA splicing factor [ 99.8 1.2E-16 2.6E-21 159.4 23.1 234 137-410 258-504 (506)
105 KOG1407 WD40 repeat protein [F 99.8 6.7E-17 1.5E-21 152.5 20.1 225 194-448 22-257 (313)
106 KOG0264 Nucleosome remodeling 99.8 5.4E-17 1.2E-21 162.6 20.7 185 252-451 192-403 (422)
107 KOG0283 WD40 repeat-containing 99.8 2.9E-17 6.3E-22 174.8 19.2 203 136-371 365-576 (712)
108 KOG1274 WD40 repeat protein [G 99.8 2.1E-16 4.6E-21 169.3 24.8 236 147-452 18-262 (933)
109 KOG1408 WD40 repeat protein [F 99.7 8.5E-17 1.8E-21 168.0 20.8 270 156-452 394-713 (1080)
110 KOG0646 WD40 repeat protein [G 99.7 2.6E-16 5.6E-21 158.3 23.5 262 156-452 9-307 (476)
111 KOG1332 Vesicle coat complex C 99.7 8.9E-17 1.9E-21 150.4 18.2 230 149-412 18-286 (299)
112 KOG4283 Transcription-coupled 99.7 8.5E-16 1.8E-20 147.1 25.1 272 147-450 46-363 (397)
113 KOG1539 WD repeat protein [Gen 99.7 8.5E-16 1.9E-20 163.2 27.5 288 137-452 199-606 (910)
114 COG2319 FOG: WD40 repeat [Gene 99.7 1.3E-14 2.8E-19 142.9 34.5 274 138-452 63-359 (466)
115 KOG0321 WD40 repeat-containing 99.7 1.1E-16 2.4E-21 165.8 19.3 249 138-416 98-395 (720)
116 KOG0973 Histone transcription 99.7 2E-16 4.3E-21 172.3 22.0 241 195-452 16-312 (942)
117 KOG0264 Nucleosome remodeling 99.7 1.1E-16 2.5E-21 160.4 17.6 194 138-371 175-404 (422)
118 KOG0639 Transducin-like enhanc 99.7 2.4E-16 5.1E-21 159.5 17.7 268 147-451 422-703 (705)
119 KOG0644 Uncharacterized conser 99.7 2.3E-17 4.9E-22 174.8 10.8 266 138-451 188-467 (1113)
120 KOG0772 Uncharacterized conser 99.7 3.3E-16 7.1E-21 159.0 18.6 231 193-441 168-427 (641)
121 KOG2096 WD40 repeat protein [G 99.7 2.1E-15 4.5E-20 145.8 20.9 249 178-450 80-358 (420)
122 KOG4283 Transcription-coupled 99.7 4E-15 8.6E-20 142.6 21.1 168 147-327 104-281 (397)
123 KOG0650 WD40 repeat nucleolar 99.7 3.2E-15 7E-20 154.1 21.3 277 136-449 396-732 (733)
124 KOG2445 Nuclear pore complex c 99.7 2.1E-14 4.5E-19 138.4 25.4 99 348-450 186-316 (361)
125 KOG0305 Anaphase promoting com 99.7 2.8E-15 6.1E-20 155.7 20.6 219 205-452 190-419 (484)
126 KOG1539 WD repeat protein [Gen 99.7 1.6E-14 3.5E-19 153.6 26.5 186 241-450 454-646 (910)
127 KOG0646 WD40 repeat protein [G 99.7 3.7E-15 8E-20 150.0 19.5 213 147-429 84-323 (476)
128 KOG0321 WD40 repeat-containing 99.7 4.2E-15 9.1E-20 154.2 19.4 291 143-452 46-391 (720)
129 KOG0270 WD40 repeat-containing 99.7 6.5E-15 1.4E-19 147.5 19.6 233 155-417 193-454 (463)
130 KOG0270 WD40 repeat-containing 99.7 2.5E-15 5.4E-20 150.5 16.3 200 137-376 240-454 (463)
131 KOG2048 WD40 repeat protein [G 99.6 1.7E-13 3.7E-18 143.2 29.0 265 147-448 28-315 (691)
132 KOG1036 Mitotic spindle checkp 99.6 5.5E-14 1.2E-18 135.5 23.4 227 193-452 14-262 (323)
133 KOG1408 WD40 repeat protein [F 99.6 8.5E-15 1.8E-19 153.2 16.8 234 147-413 462-714 (1080)
134 COG2319 FOG: WD40 repeat [Gene 99.6 2.9E-12 6.2E-17 126.2 34.0 268 138-452 153-442 (466)
135 KOG0269 WD40 repeat-containing 99.6 6.8E-15 1.5E-19 155.4 14.5 221 199-447 97-335 (839)
136 KOG1063 RNA polymerase II elon 99.6 2E-13 4.4E-18 142.9 24.9 110 340-452 531-648 (764)
137 KOG4328 WD40 protein [Function 99.6 1.3E-13 2.8E-18 138.7 21.4 268 147-450 189-493 (498)
138 KOG1034 Transcriptional repres 99.6 1.5E-14 3.2E-19 140.5 13.4 235 155-412 106-383 (385)
139 PRK11028 6-phosphogluconolacto 99.6 3E-12 6.5E-17 128.9 30.9 260 157-451 5-303 (330)
140 KOG1063 RNA polymerase II elon 99.6 2.7E-13 5.8E-18 142.1 23.5 273 137-449 51-388 (764)
141 KOG0269 WD40 repeat-containing 99.6 2.3E-14 4.9E-19 151.5 15.6 206 151-391 97-317 (839)
142 KOG0642 Cell-cycle nuclear pro 99.6 1.2E-14 2.5E-19 149.3 12.6 236 194-452 296-561 (577)
143 KOG2055 WD40 repeat protein [G 99.6 2.1E-13 4.5E-18 137.3 20.4 270 147-452 216-512 (514)
144 KOG0303 Actin-binding protein 99.6 1.5E-13 3.3E-18 136.1 19.1 205 225-452 75-294 (472)
145 KOG0639 Transducin-like enhanc 99.6 3.1E-14 6.7E-19 144.3 14.1 231 194-451 421-662 (705)
146 KOG0302 Ribosome Assembly prot 99.6 1E-13 2.2E-18 136.7 17.0 150 238-413 214-379 (440)
147 KOG1274 WD40 repeat protein [G 99.6 4.3E-13 9.3E-18 144.2 22.1 209 145-384 57-281 (933)
148 KOG2048 WD40 repeat protein [G 99.5 2E-12 4.3E-17 135.4 26.0 226 194-450 27-273 (691)
149 KOG2919 Guanine nucleotide-bin 99.5 3.6E-13 7.8E-18 130.7 16.6 232 199-452 58-327 (406)
150 KOG4378 Nuclear protein COP1 [ 99.5 4.1E-13 8.8E-18 136.2 17.4 206 155-395 92-305 (673)
151 KOG0642 Cell-cycle nuclear pro 99.5 2E-13 4.3E-18 140.4 14.3 244 138-423 292-572 (577)
152 KOG0294 WD40 repeat-containing 99.5 1.4E-12 3.1E-17 126.1 18.2 180 246-452 52-237 (362)
153 KOG1009 Chromatin assembly com 99.5 7.2E-12 1.6E-16 124.7 23.4 272 147-448 16-368 (434)
154 KOG1273 WD40 repeat protein [G 99.5 5.2E-12 1.1E-16 122.3 21.7 270 147-451 26-321 (405)
155 KOG0303 Actin-binding protein 99.5 9.2E-13 2E-17 130.6 16.9 195 138-373 79-296 (472)
156 KOG2106 Uncharacterized conser 99.5 1.1E-10 2.3E-15 119.1 31.9 246 122-409 229-518 (626)
157 PRK01742 tolB translocation pr 99.5 8.6E-12 1.9E-16 130.7 24.7 207 211-451 183-400 (429)
158 KOG0644 Uncharacterized conser 99.5 3.6E-14 7.9E-19 150.8 6.6 220 194-452 192-426 (1113)
159 KOG0302 Ribosome Assembly prot 99.5 2.9E-13 6.3E-18 133.5 12.5 156 137-323 208-379 (440)
160 KOG1273 WD40 repeat protein [G 99.5 4.7E-12 1E-16 122.6 19.0 226 196-451 27-279 (405)
161 PRK01742 tolB translocation pr 99.5 3.9E-12 8.5E-17 133.2 20.1 229 161-433 181-425 (429)
162 KOG0268 Sof1-like rRNA process 99.4 1.2E-12 2.6E-17 128.6 14.2 236 147-420 112-353 (433)
163 KOG1034 Transcriptional repres 99.4 2.2E-11 4.9E-16 118.5 21.7 277 138-451 36-382 (385)
164 KOG0307 Vesicle coat complex C 99.4 7.6E-13 1.6E-17 145.3 10.8 238 147-415 67-330 (1049)
165 KOG1517 Guanine nucleotide bin 99.4 2.3E-11 4.9E-16 132.5 21.2 272 150-451 1070-1380(1387)
166 KOG4328 WD40 protein [Function 99.4 6.9E-12 1.5E-16 126.4 15.9 203 225-451 180-398 (498)
167 KOG1188 WD40 repeat protein [G 99.4 2.8E-11 6.2E-16 118.3 17.8 259 155-450 41-344 (376)
168 KOG4227 WD40 repeat protein [G 99.4 6.4E-11 1.4E-15 117.4 19.3 269 138-450 54-385 (609)
169 KOG4378 Nuclear protein COP1 [ 99.3 6.4E-11 1.4E-15 120.4 19.4 256 163-452 11-280 (673)
170 KOG0649 WD40 repeat protein [G 99.3 8E-11 1.7E-15 110.8 18.6 193 242-452 17-235 (325)
171 KOG0307 Vesicle coat complex C 99.3 5.2E-12 1.1E-16 138.8 12.1 225 204-452 82-327 (1049)
172 KOG0649 WD40 repeat protein [G 99.3 3.9E-10 8.5E-15 106.1 21.5 231 149-451 17-273 (325)
173 KOG2106 Uncharacterized conser 99.3 5.6E-09 1.2E-13 106.7 31.0 263 147-452 203-477 (626)
174 PRK03629 tolB translocation pr 99.3 2.8E-09 6E-14 111.8 28.3 210 213-451 180-405 (429)
175 KOG2919 Guanine nucleotide-bin 99.3 7.1E-11 1.5E-15 114.9 14.2 222 153-403 122-360 (406)
176 KOG1445 Tumor-specific antigen 99.2 1.5E-10 3.3E-15 120.5 15.7 226 208-451 599-843 (1012)
177 PRK04922 tolB translocation pr 99.2 6E-09 1.3E-13 109.4 27.9 208 213-451 185-410 (433)
178 PRK11028 6-phosphogluconolacto 99.2 6.3E-09 1.4E-13 104.8 27.0 220 206-452 6-258 (330)
179 KOG0322 G-protein beta subunit 99.2 2.4E-10 5.2E-15 108.6 14.2 242 147-411 17-322 (323)
180 KOG1334 WD40 repeat protein [G 99.2 2.3E-10 5.1E-15 116.3 13.8 270 147-451 145-465 (559)
181 KOG1538 Uncharacterized conser 99.2 2.1E-09 4.6E-14 112.7 19.7 257 147-451 15-292 (1081)
182 PRK03629 tolB translocation pr 99.2 1.9E-08 4E-13 105.6 27.0 227 163-429 178-421 (429)
183 KOG2445 Nuclear pore complex c 99.1 4.9E-09 1.1E-13 101.6 19.1 189 241-452 19-256 (361)
184 KOG0771 Prolactin regulatory e 99.1 7E-10 1.5E-14 111.2 13.7 187 198-412 152-354 (398)
185 KOG0650 WD40 repeat nucleolar 99.1 2.8E-09 6.1E-14 110.7 17.7 250 176-449 392-677 (733)
186 PRK04922 tolB translocation pr 99.1 1.3E-08 2.8E-13 106.9 23.0 224 163-425 183-423 (433)
187 KOG2055 WD40 repeat protein [G 99.1 4.8E-09 1.1E-13 106.2 18.6 188 240-451 218-416 (514)
188 PRK05137 tolB translocation pr 99.1 3.1E-08 6.7E-13 104.0 25.5 199 213-441 183-394 (435)
189 KOG0771 Prolactin regulatory e 99.1 2.7E-09 5.8E-14 107.0 15.7 194 240-451 149-353 (398)
190 TIGR02800 propeller_TolB tol-p 99.1 8.1E-08 1.8E-12 99.5 27.6 179 240-441 194-382 (417)
191 KOG1587 Cytoplasmic dynein int 99.1 1.3E-08 2.7E-13 108.9 20.5 239 147-413 245-517 (555)
192 KOG1517 Guanine nucleotide bin 99.0 1.1E-08 2.3E-13 112.2 19.7 228 204-452 1078-1333(1387)
193 KOG1963 WD40 repeat protein [G 99.0 3.9E-08 8.4E-13 106.3 23.8 266 151-450 23-320 (792)
194 PRK02889 tolB translocation pr 99.0 6.1E-08 1.3E-12 101.7 24.0 174 240-441 200-388 (427)
195 KOG2110 Uncharacterized conser 99.0 4.9E-08 1.1E-12 96.8 21.6 171 260-452 68-248 (391)
196 KOG1240 Protein kinase contain 99.0 8.5E-08 1.8E-12 106.7 25.6 239 147-413 1051-1335(1431)
197 KOG0322 G-protein beta subunit 99.0 7.6E-09 1.7E-13 98.5 13.9 252 177-451 7-322 (323)
198 TIGR03300 assembly_YfgL outer 99.0 1.2E-06 2.7E-11 89.9 30.2 266 151-449 102-376 (377)
199 KOG1445 Tumor-specific antigen 99.0 1.3E-09 2.9E-14 113.6 8.0 132 311-450 600-748 (1012)
200 KOG1240 Protein kinase contain 98.9 1.2E-07 2.5E-12 105.6 22.7 253 169-452 1034-1334(1431)
201 PRK02889 tolB translocation pr 98.9 1.9E-07 4.2E-12 97.8 23.7 225 163-426 175-416 (427)
202 PF02239 Cytochrom_D1: Cytochr 98.9 7.9E-07 1.7E-11 91.5 27.3 275 156-452 8-347 (369)
203 KOG1188 WD40 repeat protein [G 98.9 3.6E-08 7.7E-13 96.9 14.9 180 253-452 43-242 (376)
204 KOG0974 WD-repeat protein WDR6 98.9 1.2E-07 2.5E-12 104.2 19.7 271 147-451 10-287 (967)
205 KOG4227 WD40 repeat protein [G 98.9 7.5E-08 1.6E-12 96.0 16.4 243 176-453 48-323 (609)
206 KOG1310 WD40 repeat protein [G 98.9 2.2E-08 4.8E-13 103.3 12.3 160 137-322 47-231 (758)
207 KOG0974 WD-repeat protein WDR6 98.9 3.7E-08 7.9E-13 108.1 14.7 191 150-372 95-289 (967)
208 TIGR03300 assembly_YfgL outer 98.8 5.5E-06 1.2E-10 85.1 28.8 263 151-451 62-337 (377)
209 PRK05137 tolB translocation pr 98.8 2.2E-06 4.8E-11 90.0 25.4 220 163-421 181-420 (435)
210 KOG1007 WD repeat protein TSSC 98.8 2.6E-07 5.5E-12 89.3 16.4 187 240-448 128-357 (370)
211 KOG1009 Chromatin assembly com 98.8 6.6E-08 1.4E-12 96.8 12.3 147 240-400 18-182 (434)
212 KOG1587 Cytoplasmic dynein int 98.8 1.2E-06 2.7E-11 93.8 22.5 280 146-452 196-516 (555)
213 PRK00178 tolB translocation pr 98.8 3.3E-06 7.1E-11 88.4 25.4 186 240-451 203-405 (430)
214 KOG1963 WD40 repeat protein [G 98.7 5.3E-06 1.1E-10 90.1 26.4 241 137-413 54-323 (792)
215 KOG4547 WD40 repeat-containing 98.7 9.6E-07 2.1E-11 92.2 19.9 202 155-412 6-220 (541)
216 TIGR02658 TTQ_MADH_Hv methylam 98.7 4.5E-05 9.7E-10 77.8 31.6 252 163-452 26-330 (352)
217 PF08662 eIF2A: Eukaryotic tra 98.7 6E-07 1.3E-11 84.2 16.8 105 339-452 64-179 (194)
218 KOG0290 Conserved WD40 repeat- 98.7 2.6E-07 5.6E-12 89.3 14.3 195 241-452 102-318 (364)
219 PRK04792 tolB translocation pr 98.7 7.1E-06 1.5E-10 86.7 26.1 185 241-451 223-424 (448)
220 PRK00178 tolB translocation pr 98.7 9.7E-06 2.1E-10 84.8 26.3 222 165-425 180-418 (430)
221 KOG1538 Uncharacterized conser 98.7 8E-07 1.7E-11 93.7 16.9 233 137-413 50-294 (1081)
222 KOG4547 WD40 repeat-containing 98.6 2.2E-06 4.7E-11 89.6 19.2 189 253-451 8-219 (541)
223 PF08662 eIF2A: Eukaryotic tra 98.6 4.4E-06 9.5E-11 78.4 19.5 116 295-420 60-186 (194)
224 KOG0290 Conserved WD40 repeat- 98.6 4.8E-07 1E-11 87.5 12.2 155 147-324 153-320 (364)
225 KOG3881 Uncharacterized conser 98.6 3.5E-06 7.7E-11 84.3 18.6 251 147-419 58-327 (412)
226 KOG2110 Uncharacterized conser 98.6 3.1E-05 6.7E-10 77.2 24.8 94 314-413 153-249 (391)
227 PRK04792 tolB translocation pr 98.6 1.8E-05 4E-10 83.6 24.9 224 164-426 198-438 (448)
228 PF12937 F-box-like: F-box-lik 98.6 1.5E-08 3.3E-13 72.7 0.9 46 47-96 2-47 (47)
229 PF10282 Lactonase: Lactonase, 98.5 0.00092 2E-08 68.1 35.4 270 157-452 2-322 (345)
230 KOG1007 WD repeat protein TSSC 98.5 7.8E-07 1.7E-11 86.0 11.9 152 292-452 121-289 (370)
231 PF13360 PQQ_2: PQQ-like domai 98.5 0.00019 4E-09 68.2 28.2 220 162-418 1-236 (238)
232 PRK01029 tolB translocation pr 98.5 2.8E-05 6.1E-10 81.7 24.3 188 241-452 190-403 (428)
233 TIGR02800 propeller_TolB tol-p 98.5 4.5E-05 9.9E-10 79.0 25.5 222 163-423 169-407 (417)
234 KOG1334 WD40 repeat protein [G 98.5 1.4E-06 3.1E-11 89.1 13.6 241 178-451 136-423 (559)
235 PLN02919 haloacid dehalogenase 98.5 0.00011 2.5E-09 85.2 29.9 253 149-416 572-892 (1057)
236 KOG1524 WD40 repeat-containing 98.5 1E-05 2.2E-10 83.9 18.8 253 147-446 17-280 (737)
237 KOG2111 Uncharacterized conser 98.5 2.5E-05 5.4E-10 76.6 20.3 176 164-371 75-256 (346)
238 KOG1310 WD40 repeat protein [G 98.5 3.5E-07 7.5E-12 94.7 7.7 156 289-451 45-230 (758)
239 PF02239 Cytochrom_D1: Cytochr 98.4 0.00016 3.5E-09 74.6 24.7 260 147-421 80-356 (369)
240 KOG4190 Uncharacterized conser 98.4 1.9E-06 4.2E-11 89.2 10.2 261 107-449 706-985 (1034)
241 KOG2111 Uncharacterized conser 98.4 6.2E-05 1.3E-09 73.9 20.0 153 292-452 92-256 (346)
242 PF13360 PQQ_2: PQQ-like domai 98.3 0.00085 1.8E-08 63.6 27.2 173 253-452 39-230 (238)
243 KOG2321 WD40 repeat protein [G 98.3 0.0001 2.3E-09 77.1 21.8 260 147-448 54-339 (703)
244 KOG1354 Serine/threonine prote 98.3 3E-05 6.5E-10 76.8 16.9 249 194-451 27-358 (433)
245 PRK11138 outer membrane biogen 98.3 0.00066 1.4E-08 70.4 28.2 268 151-451 117-393 (394)
246 KOG1272 WD40-repeat-containing 98.3 2.3E-06 5E-11 87.2 9.2 197 240-450 134-360 (545)
247 PLN02919 haloacid dehalogenase 98.3 0.00068 1.5E-08 78.8 30.3 241 197-452 572-888 (1057)
248 KOG2139 WD40 repeat protein [G 98.3 3.3E-05 7.2E-10 76.9 16.4 110 292-411 194-308 (445)
249 KOG0309 Conserved WD40 repeat- 98.2 5.2E-06 1.1E-10 88.7 10.1 265 148-452 30-339 (1081)
250 KOG2394 WD40 protein DMR-N9 [G 98.2 3.4E-06 7.3E-11 87.4 8.4 89 194-303 292-383 (636)
251 KOG4190 Uncharacterized conser 98.2 3.1E-06 6.8E-11 87.7 7.9 182 253-449 750-945 (1034)
252 PF00400 WD40: WD domain, G-be 98.2 3.9E-06 8.5E-11 57.0 5.5 36 414-450 1-39 (39)
253 PRK01029 tolB translocation pr 98.2 0.00067 1.5E-08 71.3 24.8 227 164-419 165-410 (428)
254 KOG3881 Uncharacterized conser 98.1 0.00016 3.4E-09 72.7 17.6 181 253-452 118-320 (412)
255 KOG1354 Serine/threonine prote 98.1 0.00047 1E-08 68.5 19.3 244 147-414 28-361 (433)
256 KOG2139 WD40 repeat protein [G 98.1 0.00021 4.5E-09 71.4 16.7 162 253-440 113-297 (445)
257 KOG1524 WD40 repeat-containing 98.0 0.00033 7.1E-09 73.0 18.5 161 153-356 115-278 (737)
258 PRK04043 tolB translocation pr 98.0 0.0051 1.1E-07 64.6 27.3 178 240-441 192-385 (419)
259 KOG1523 Actin-related protein 98.0 0.00042 9E-09 68.3 17.5 193 147-373 13-238 (361)
260 PRK11138 outer membrane biogen 98.0 0.0064 1.4E-07 63.0 27.5 240 151-420 66-320 (394)
261 KOG3914 WD repeat protein WDR4 98.0 9.5E-05 2.1E-09 74.5 12.7 100 210-330 130-231 (390)
262 KOG0309 Conserved WD40 repeat- 97.9 8.7E-05 1.9E-09 79.6 12.1 239 145-413 68-340 (1081)
263 KOG1064 RAVE (regulator of V-A 97.9 6.1E-05 1.3E-09 87.3 11.3 181 203-422 2221-2408(2439)
264 KOG2394 WD40 protein DMR-N9 [G 97.9 2.8E-05 6.1E-10 80.7 7.9 87 340-434 296-383 (636)
265 KOG2321 WD40 repeat protein [G 97.9 0.00089 1.9E-08 70.4 18.3 177 205-403 148-333 (703)
266 KOG1272 WD40-repeat-containing 97.9 2.6E-05 5.6E-10 79.8 6.9 225 148-413 133-364 (545)
267 KOG2315 Predicted translation 97.8 0.0024 5.2E-08 67.0 20.2 64 388-452 316-390 (566)
268 PF00400 WD40: WD domain, G-be 97.8 5E-05 1.1E-09 51.4 5.5 37 174-218 1-39 (39)
269 KOG4497 Uncharacterized conser 97.8 0.0025 5.3E-08 63.2 18.2 110 147-271 13-125 (447)
270 KOG3914 WD repeat protein WDR4 97.8 0.00019 4.2E-09 72.3 10.8 99 314-421 132-232 (390)
271 KOG1409 Uncharacterized conser 97.8 0.0014 3.1E-08 65.1 16.6 195 155-372 37-271 (404)
272 KOG1064 RAVE (regulator of V-A 97.8 9.5E-05 2.1E-09 85.8 9.5 169 253-452 2223-2398(2439)
273 PF10282 Lactonase: Lactonase, 97.7 0.077 1.7E-06 54.1 30.6 190 240-451 41-274 (345)
274 PF07433 DUF1513: Protein of u 97.7 0.03 6.4E-07 55.9 25.0 108 314-421 138-256 (305)
275 KOG4497 Uncharacterized conser 97.7 0.0012 2.6E-08 65.4 14.3 181 241-450 14-238 (447)
276 COG5354 Uncharacterized protei 97.7 0.054 1.2E-06 56.7 26.8 278 147-452 74-395 (561)
277 PF00646 F-box: F-box domain; 97.6 3.9E-05 8.4E-10 54.8 2.7 46 46-95 3-48 (48)
278 TIGR02658 TTQ_MADH_Hv methylam 97.6 0.073 1.6E-06 54.5 26.6 80 340-420 253-338 (352)
279 COG5170 CDC55 Serine/threonine 97.5 0.0034 7.4E-08 61.8 15.5 246 194-449 28-364 (460)
280 KOG0280 Uncharacterized conser 97.5 0.021 4.5E-07 56.0 20.3 150 156-327 87-246 (339)
281 KOG2997 F-box protein FBX9 [Ge 97.5 8.5E-05 1.8E-09 73.1 4.1 55 46-100 107-162 (366)
282 smart00256 FBOX A Receptor for 97.4 6.7E-05 1.5E-09 51.4 1.8 40 49-92 1-40 (41)
283 KOG1832 HIV-1 Vpr-binding prot 97.4 0.0001 2.3E-09 80.4 3.2 186 147-378 1104-1298(1516)
284 KOG4532 WD40-like repeat conta 97.3 0.052 1.1E-06 52.8 20.2 196 155-380 85-291 (344)
285 COG2706 3-carboxymuconate cycl 97.3 0.23 4.9E-06 50.1 25.4 216 211-451 15-273 (346)
286 PRK04043 tolB translocation pr 97.3 0.21 4.4E-06 52.6 26.2 191 198-413 195-401 (419)
287 PF08450 SGL: SMP-30/Gluconola 97.2 0.25 5.3E-06 47.5 26.0 189 241-451 5-212 (246)
288 KOG2695 WD40 repeat protein [G 97.1 0.0015 3.3E-08 65.0 7.9 121 241-382 258-387 (425)
289 KOG1409 Uncharacterized conser 97.1 0.023 5E-07 56.8 15.8 223 202-452 36-270 (404)
290 KOG0280 Uncharacterized conser 97.1 0.012 2.5E-07 57.8 13.3 185 240-450 126-331 (339)
291 COG2706 3-carboxymuconate cycl 97.1 0.42 9.2E-06 48.2 29.6 193 239-451 92-320 (346)
292 KOG1832 HIV-1 Vpr-binding prot 97.1 0.00035 7.6E-09 76.5 3.0 186 194-421 1103-1300(1516)
293 KOG1523 Actin-related protein 97.0 0.023 5E-07 56.3 15.1 188 241-450 16-234 (361)
294 COG4946 Uncharacterized protei 96.8 0.06 1.3E-06 55.9 16.0 138 292-438 357-503 (668)
295 KOG2695 WD40 repeat protein [G 96.6 0.0088 1.9E-07 59.7 8.5 142 255-422 229-386 (425)
296 COG4946 Uncharacterized protei 96.5 1.2 2.5E-05 46.8 23.5 189 243-452 274-477 (668)
297 PF15492 Nbas_N: Neuroblastoma 96.3 0.85 1.8E-05 44.8 19.9 189 240-452 48-259 (282)
298 smart00320 WD40 WD40 repeats. 96.2 0.013 2.7E-07 36.8 5.0 36 414-450 2-40 (40)
299 KOG2066 Vacuolar assembly/sort 96.1 0.077 1.7E-06 58.3 13.2 182 194-412 41-233 (846)
300 KOG2314 Translation initiation 96.1 1.1 2.4E-05 47.8 20.9 104 342-452 453-573 (698)
301 KOG1645 RING-finger-containing 96.0 0.38 8.2E-06 49.3 16.6 40 144-183 193-235 (463)
302 KOG4532 WD40-like repeat conta 96.0 0.71 1.5E-05 45.1 17.6 177 252-451 86-281 (344)
303 KOG0882 Cyclophilin-related pe 95.9 0.22 4.8E-06 51.6 14.5 245 147-420 12-313 (558)
304 COG5354 Uncharacterized protei 95.8 1.6 3.5E-05 46.0 20.5 233 195-452 35-306 (561)
305 COG5170 CDC55 Serine/threonine 95.6 0.2 4.3E-06 49.8 12.2 88 364-452 194-309 (460)
306 PF15492 Nbas_N: Neuroblastoma 95.5 2.7 5.9E-05 41.4 20.7 200 148-374 47-262 (282)
307 smart00320 WD40 WD40 repeats. 95.5 0.023 5E-07 35.5 4.0 24 147-170 15-40 (40)
308 cd00216 PQQ_DH Dehydrogenases 95.2 5.3 0.00012 42.7 27.9 32 151-182 106-138 (488)
309 KOG4714 Nucleoporin [Nuclear s 95.2 0.19 4.1E-06 48.8 10.5 70 194-269 181-255 (319)
310 KOG1275 PAB-dependent poly(A) 95.0 0.41 8.8E-06 53.6 13.7 180 150-369 143-340 (1118)
311 KOG0882 Cyclophilin-related pe 94.9 0.097 2.1E-06 54.1 7.9 193 202-420 20-239 (558)
312 KOG2120 SCF ubiquitin ligase, 94.6 0.014 3E-07 57.8 1.1 44 47-94 99-142 (419)
313 KOG1275 PAB-dependent poly(A) 94.5 0.44 9.6E-06 53.3 12.3 147 148-320 181-340 (1118)
314 KOG2314 Translation initiation 94.1 0.24 5.2E-06 52.5 8.9 102 340-451 216-333 (698)
315 KOG4649 PQQ (pyrrolo-quinoline 94.1 6.5 0.00014 38.6 18.9 32 150-181 101-132 (354)
316 COG0823 TolB Periplasmic compo 93.9 1.7 3.6E-05 45.8 15.0 177 241-439 198-385 (425)
317 PF14783 BBS2_Mid: Ciliary BBS 93.7 2.6 5.7E-05 35.9 13.0 53 155-218 16-69 (111)
318 PF07433 DUF1513: Protein of u 93.7 5.2 0.00011 40.2 17.2 135 300-441 10-180 (305)
319 cd00216 PQQ_DH Dehydrogenases 93.6 12 0.00026 40.0 29.6 70 153-223 60-130 (488)
320 KOG4341 F-box protein containi 93.5 0.029 6.2E-07 57.8 1.1 43 47-93 73-115 (483)
321 KOG4714 Nucleoporin [Nuclear s 93.4 0.17 3.6E-06 49.2 5.9 128 314-450 159-316 (319)
322 KOG1912 WD40 repeat protein [G 93.3 1.7 3.6E-05 48.2 13.7 145 298-450 19-184 (1062)
323 KOG1912 WD40 repeat protein [G 92.8 2.7 5.8E-05 46.6 14.5 114 240-379 20-151 (1062)
324 KOG2315 Predicted translation 92.8 1.7 3.6E-05 46.3 12.5 111 240-371 275-390 (566)
325 PF11768 DUF3312: Protein of u 92.6 0.54 1.2E-05 50.3 8.9 70 336-414 261-331 (545)
326 KOG3926 F-box proteins [Amino 91.5 0.077 1.7E-06 51.6 1.0 65 47-114 203-276 (332)
327 PF08450 SGL: SMP-30/Gluconola 90.5 16 0.00035 34.7 29.9 211 149-399 4-241 (246)
328 PF11768 DUF3312: Protein of u 89.5 1.7 3.7E-05 46.6 8.9 65 147-221 262-330 (545)
329 PF14783 BBS2_Mid: Ciliary BBS 89.4 13 0.00027 31.8 13.0 26 241-268 8-33 (111)
330 KOG2114 Vacuolar assembly/sort 89.3 2.1 4.6E-05 47.8 9.7 103 338-449 27-152 (933)
331 COG3490 Uncharacterized protei 89.0 15 0.00032 36.6 14.3 31 388-418 284-316 (366)
332 PRK02888 nitrous-oxide reducta 88.6 19 0.0004 39.8 16.2 136 314-452 215-404 (635)
333 KOG2066 Vacuolar assembly/sort 88.4 3.3 7.2E-05 46.0 10.3 140 295-452 40-187 (846)
334 KOG2041 WD40 repeat protein [G 88.2 48 0.001 37.0 21.9 71 143-221 13-102 (1189)
335 PRK02888 nitrous-oxide reducta 88.1 29 0.00063 38.3 17.2 117 313-441 295-449 (635)
336 KOG2395 Protein involved in va 87.7 16 0.00034 39.3 14.3 145 253-411 349-499 (644)
337 PF11715 Nup160: Nucleoporin N 87.7 0.82 1.8E-05 49.5 5.4 29 154-182 230-258 (547)
338 PF12894 Apc4_WD40: Anaphase-p 87.6 1.2 2.7E-05 31.8 4.5 30 147-177 14-45 (47)
339 COG0823 TolB Periplasmic compo 86.4 3.5 7.7E-05 43.4 9.1 118 314-441 218-343 (425)
340 PF08553 VID27: VID27 cytoplas 86.2 13 0.00029 42.1 13.8 139 253-412 497-647 (794)
341 PF08553 VID27: VID27 cytoplas 86.1 17 0.00036 41.4 14.5 141 157-322 497-647 (794)
342 PF08596 Lgl_C: Lethal giant l 85.4 51 0.0011 34.4 25.2 228 116-402 66-325 (395)
343 PF02897 Peptidase_S9_N: Proly 85.4 48 0.001 34.2 26.7 194 241-452 129-357 (414)
344 KOG2114 Vacuolar assembly/sort 85.0 76 0.0016 36.1 19.4 208 194-426 27-258 (933)
345 KOG1645 RING-finger-containing 85.0 2.4 5.1E-05 43.7 6.6 70 381-452 191-266 (463)
346 KOG2041 WD40 repeat protein [G 83.9 8.5 0.00019 42.5 10.4 71 253-325 29-104 (1189)
347 PF03178 CPSF_A: CPSF A subuni 83.4 51 0.0011 32.8 21.0 127 314-451 62-201 (321)
348 KOG2444 WD40 repeat protein [G 83.1 3.2 7E-05 39.7 6.3 66 202-271 70-135 (238)
349 PF00930 DPPIV_N: Dipeptidyl p 83.0 7.6 0.00016 39.6 9.6 87 364-451 24-130 (353)
350 KOG2079 Vacuolar assembly/sort 82.2 4.4 9.5E-05 46.5 7.8 70 198-273 95-165 (1206)
351 KOG1008 Uncharacterized conser 80.8 0.51 1.1E-05 51.0 0.1 180 253-452 73-275 (783)
352 PF14583 Pectate_lyase22: Olig 79.8 81 0.0018 32.8 29.1 152 292-449 185-378 (386)
353 PF04053 Coatomer_WDAD: Coatom 79.7 82 0.0018 33.5 16.1 135 296-451 34-172 (443)
354 KOG2444 WD40 repeat protein [G 77.9 9.5 0.00021 36.6 7.5 100 346-452 70-177 (238)
355 PF04053 Coatomer_WDAD: Coatom 77.3 48 0.001 35.2 13.5 132 240-411 37-172 (443)
356 PF06881 Elongin_A: RNA polyme 76.3 3.7 8.1E-05 34.7 4.0 61 47-114 5-71 (109)
357 PF06433 Me-amine-dh_H: Methyl 74.8 1E+02 0.0023 31.5 29.0 266 145-452 5-320 (342)
358 KOG1008 Uncharacterized conser 73.3 1 2.3E-05 48.7 -0.1 137 258-412 127-275 (783)
359 PF02897 Peptidase_S9_N: Proly 72.7 1.2E+02 0.0026 31.2 32.7 239 147-416 126-408 (414)
360 KOG4649 PQQ (pyrrolo-quinoline 72.3 1.1E+02 0.0023 30.4 24.1 64 153-223 62-126 (354)
361 PF07569 Hira: TUP1-like enhan 70.1 30 0.00064 33.0 9.0 59 393-452 20-95 (219)
362 KOG3617 WD40 and TPR repeat-co 68.5 8.8 0.00019 43.2 5.5 85 364-452 42-131 (1416)
363 PF06433 Me-amine-dh_H: Methyl 67.4 38 0.00082 34.6 9.4 82 340-422 243-330 (342)
364 PF04762 IKI3: IKI3 family; I 66.7 2.6E+02 0.0057 32.7 20.4 214 198-451 215-455 (928)
365 KOG2079 Vacuolar assembly/sort 65.1 28 0.00061 40.4 8.6 95 307-411 102-202 (1206)
366 KOG4640 Anaphase-promoting com 63.2 26 0.00056 38.3 7.6 23 430-452 69-92 (665)
367 PF07569 Hira: TUP1-like enhan 62.6 18 0.00039 34.5 5.9 31 147-177 15-45 (219)
368 KOG2395 Protein involved in va 62.0 91 0.002 33.7 11.2 59 391-451 437-499 (644)
369 TIGR03075 PQQ_enz_alc_DH PQQ-d 62.0 2.4E+02 0.0052 30.6 20.7 122 253-379 72-197 (527)
370 PF00930 DPPIV_N: Dipeptidyl p 61.0 27 0.00059 35.5 7.3 48 404-451 23-70 (353)
371 PRK13616 lipoprotein LpqB; Pro 59.7 86 0.0019 34.6 11.2 103 340-448 355-472 (591)
372 smart00564 PQQ beta-propeller 59.4 28 0.00061 21.8 4.7 28 153-180 5-32 (33)
373 PF11715 Nup160: Nucleoporin N 58.8 20 0.00043 38.8 6.1 27 394-420 229-256 (547)
374 PF05096 Glu_cyclase_2: Glutam 58.8 1.9E+02 0.0042 28.5 15.0 110 332-450 40-155 (264)
375 KOG3621 WD40 repeat-containing 56.1 57 0.0012 36.2 8.8 116 145-269 36-155 (726)
376 PF14655 RAB3GAP2_N: Rab3 GTPa 55.0 1.2E+02 0.0027 31.9 11.0 84 292-382 305-409 (415)
377 PF05096 Glu_cyclase_2: Glutam 55.0 2.2E+02 0.0048 28.1 21.2 154 241-420 50-211 (264)
378 KOG3621 WD40 repeat-containing 54.5 83 0.0018 35.0 9.7 107 336-450 35-152 (726)
379 COG3391 Uncharacterized conser 53.9 2.7E+02 0.0058 28.7 19.1 145 299-450 78-237 (381)
380 PF00780 CNH: CNH domain; Int 51.4 2.3E+02 0.0049 27.1 27.0 232 151-423 4-266 (275)
381 PF14583 Pectate_lyase22: Olig 50.5 1.4E+02 0.003 31.2 10.2 95 340-440 41-141 (386)
382 PF10313 DUF2415: Uncharacteri 50.4 42 0.00091 23.6 4.5 28 386-413 3-34 (43)
383 TIGR03074 PQQ_membr_DH membran 49.1 4.6E+02 0.01 30.0 23.2 68 154-221 194-279 (764)
384 KOG4640 Anaphase-promoting com 48.4 78 0.0017 34.8 8.3 46 365-419 52-99 (665)
385 COG3386 Gluconolactonase [Carb 46.9 3.2E+02 0.0069 27.5 18.8 141 253-412 40-193 (307)
386 PF05694 SBP56: 56kDa selenium 46.4 2.2E+02 0.0049 30.2 11.1 89 364-452 223-342 (461)
387 COG3490 Uncharacterized protei 45.3 3.4E+02 0.0073 27.4 13.9 121 316-439 93-241 (366)
388 KOG1916 Nuclear protein, conta 45.2 21 0.00045 40.7 3.5 47 404-451 205-264 (1283)
389 PF10313 DUF2415: Uncharacteri 43.4 83 0.0018 22.1 5.1 27 147-173 3-34 (43)
390 PF04841 Vps16_N: Vps16, N-ter 43.1 4.1E+02 0.0089 27.7 18.6 28 295-322 81-109 (410)
391 TIGR03075 PQQ_enz_alc_DH PQQ-d 42.8 1.4E+02 0.003 32.4 9.5 27 304-330 472-498 (527)
392 PHA02713 hypothetical protein; 41.9 5E+02 0.011 28.3 16.7 66 150-221 300-376 (557)
393 TIGR02276 beta_rpt_yvtn 40-res 41.7 72 0.0016 20.9 4.7 28 394-421 2-31 (42)
394 PRK13616 lipoprotein LpqB; Pro 41.4 5.3E+02 0.011 28.5 13.9 107 296-408 351-472 (591)
395 KOG4499 Ca2+-binding protein R 40.1 1.2E+02 0.0026 29.7 7.3 55 138-203 210-264 (310)
396 PF07676 PD40: WD40-like Beta 39.8 50 0.0011 21.7 3.6 24 240-265 13-38 (39)
397 PF12894 Apc4_WD40: Anaphase-p 39.1 75 0.0016 22.5 4.5 32 385-417 13-45 (47)
398 KOG4460 Nuclear pore complex, 38.7 4E+02 0.0087 29.1 11.5 38 386-423 168-209 (741)
399 PF04762 IKI3: IKI3 family; I 38.2 7.2E+02 0.016 29.2 27.1 104 345-452 220-333 (928)
400 KOG1920 IkappaB kinase complex 37.9 7.9E+02 0.017 29.5 15.0 145 295-450 69-272 (1265)
401 PF05694 SBP56: 56kDa selenium 36.0 5.4E+02 0.012 27.4 12.0 28 386-413 314-343 (461)
402 PF14761 HPS3_N: Hermansky-Pud 35.0 4.1E+02 0.0089 25.4 15.5 146 305-451 29-213 (215)
403 PF01011 PQQ: PQQ enzyme repea 34.3 84 0.0018 20.8 4.0 26 156-181 2-27 (38)
404 KOG4441 Proteins containing BT 33.6 6.8E+02 0.015 27.5 19.8 58 314-373 444-501 (571)
405 PRK10115 protease 2; Provision 33.3 7.4E+02 0.016 27.8 23.5 187 241-449 132-341 (686)
406 PF14269 Arylsulfotran_2: Aryl 32.5 1.6E+02 0.0035 29.4 7.4 65 387-451 147-219 (299)
407 PF08596 Lgl_C: Lethal giant l 31.4 6.2E+02 0.013 26.4 20.7 154 290-452 82-290 (395)
408 COG3823 Glutamine cyclotransfe 31.1 2.8E+02 0.0061 26.7 8.1 90 314-413 68-159 (262)
409 PF14655 RAB3GAP2_N: Rab3 GTPa 30.0 3.6E+02 0.0078 28.5 9.7 18 404-421 390-407 (415)
410 PF00780 CNH: CNH domain; Int 29.8 4.9E+02 0.011 24.7 11.7 96 345-451 6-121 (275)
411 PF03178 CPSF_A: CPSF A subuni 29.8 5.5E+02 0.012 25.3 26.3 148 292-447 86-260 (321)
412 KOG4499 Ca2+-binding protein R 28.4 5.5E+02 0.012 25.2 9.7 95 241-346 163-263 (310)
413 PF12341 DUF3639: Protein of u 27.3 1.3E+02 0.0028 18.9 3.6 24 147-170 4-27 (27)
414 KOG1916 Nuclear protein, conta 25.8 55 0.0012 37.5 2.9 21 397-417 306-328 (1283)
415 PLN03215 ascorbic acid mannose 25.2 45 0.00097 34.6 2.0 35 47-84 5-39 (373)
416 PF12234 Rav1p_C: RAVE protein 23.2 6.8E+02 0.015 28.0 10.6 45 404-449 51-101 (631)
417 KOG4441 Proteins containing BT 22.7 1E+03 0.022 26.1 15.7 139 260-416 301-456 (571)
418 PF13570 PQQ_3: PQQ-like domai 21.3 1.7E+02 0.0036 19.3 3.7 25 149-173 16-40 (40)
419 COG5167 VID27 Protein involved 20.6 2E+02 0.0043 31.2 5.6 58 394-452 572-632 (776)
420 PHA02713 hypothetical protein; 20.1 1.1E+03 0.025 25.5 16.4 46 405-451 481-532 (557)
No 1
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=6.4e-59 Score=448.04 Aligned_cols=366 Identities=16% Similarity=0.272 Sum_probs=314.1
Q ss_pred ccccCCcchHHHHH----HHHHHHHHhhhhhhHhHhhhhhHHhhcccchhccCCchhHHHhhhhc------cCC------
Q 046773 37 VNEVWPEPFVEALA----AQVAIEASRSVGRLAAAAALANVFQVCSTWRAVSRSDLLWHRLTRRI------WGR------ 100 (453)
Q Consensus 37 ~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~l~~~aqv~~~W~~l~~~~~~w~~~~~~~------~~~------ 100 (453)
+..+++.|||++|| .+++..|++||+ +.+||.+..||+.|+.+..+..+|+++.++. |.+
T Consensus 66 ~rpmLqrDFi~~lP~~gl~hi~e~ilsyld----~~sLc~celv~k~W~r~l~dg~~WKkLie~~vr~dslWrgl~e~rq 141 (499)
T KOG0281|consen 66 LKPMLQRDFITALPEQGLDHIAENILSYLD----ALSLCACELVCKEWKRVLSDGMLWKKLIERMVRTDSLWRGLSERRQ 141 (499)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHhcc----hhhhhHHHHHHHHHHHHhccchHHHHHHHHhcchHHHHhhhhhccC
Confidence 45678899999999 999999999988 5599999999999999999999999998652 211
Q ss_pred ---------C-------C-cCcchhHHHHHHHhhhhhcccccCceeeEEeeCCCCCCCCCCeEEEEEEecCCEEEEEeCC
Q 046773 101 ---------T-------N-LLHATWRDEYIYRHRTAQNFRTRRYTHFNLYFDPSDVDNPDGLTCRCLTLSDLYLACGFAD 163 (453)
Q Consensus 101 ---------~-------~-~~~~~Wk~~y~~~~~~~~nw~~g~~~~~~~~~~~~gh~~~d~v~v~~lafs~~~LaSGS~D 163 (453)
+ + .+...|-..|++-..++.|||.|++....++..+ .|.++ |||||+++..|+||+.|
T Consensus 142 w~~~lf~~r~~~~~~~~n~f~~~l~pki~~di~~idsNWr~Gr~~~~rinc~S---e~skg--VYClQYDD~kiVSGlrD 216 (499)
T KOG0281|consen 142 WDQYLFKNRPNDGGFPPNSFYRLLYPKIIQDIETIESNWRCGRHLLQRINCRS---ENSKG--VYCLQYDDEKIVSGLRD 216 (499)
T ss_pred cchhhccCCCCcCCcCCCcchhhhhHHHHHHHhhhhcchhccceeeeeecCCc---ccCCc--eEEEEecchhhhccccc
Confidence 1 0 1234677889999999999999999999887653 23466 78999999999999999
Q ss_pred CcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCC--cceEEeeecceecCceEE
Q 046773 164 GAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLI 241 (453)
Q Consensus 164 ~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v 241 (453)
+||||||..+.+|++.|.||++ +|-+++|+.+.|+|||.|.||+|||+++ | +.++-.|+..|. .+
T Consensus 217 nTikiWD~n~~~c~~~L~GHtG--------SVLCLqyd~rviisGSSDsTvrvWDv~t-ge~l~tlihHceaVL----hl 283 (499)
T KOG0281|consen 217 NTIKIWDKNSLECLKILTGHTG--------SVLCLQYDERVIVSGSSDSTVRVWDVNT-GEPLNTLIHHCEAVL----HL 283 (499)
T ss_pred CceEEeccccHHHHHhhhcCCC--------cEEeeeccceEEEecCCCceEEEEeccC-CchhhHHhhhcceeE----EE
Confidence 9999999999999999999876 7889999999999999999999999999 6 677777876553 36
Q ss_pred EEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEcCCcEEEEEC
Q 046773 242 DFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSSRVITFDL 321 (453)
Q Consensus 242 ~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~d~tIrlWDl 321 (453)
.|+.. +++++|.|.+|+|||+.+..- +..-+.|.||...||.|.|+..-+++||+|.|||+||+
T Consensus 284 rf~ng-----~mvtcSkDrsiaVWdm~sps~-----------it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~ 347 (499)
T KOG0281|consen 284 RFSNG-----YMVTCSKDRSIAVWDMASPTD-----------ITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWST 347 (499)
T ss_pred EEeCC-----EEEEecCCceeEEEeccCchH-----------HHHHHHHhhhhhheeeeccccceEEEecCCceEEEEec
Confidence 77654 588999999999999987651 11125688999999999999987888899999999999
Q ss_pred CCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEE
Q 046773 322 RNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMC 401 (453)
Q Consensus 322 ~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~ 401 (453)
.|+.++.++.||..+ +.|+...+..++++|+|. |||+||+..|.|++.+.+|++.|+.+.| |.+.++++
T Consensus 348 st~efvRtl~gHkRG--IAClQYr~rlvVSGSSDn-------tIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSG 416 (499)
T KOG0281|consen 348 STCEFVRTLNGHKRG--IACLQYRDRLVVSGSSDN-------TIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSG 416 (499)
T ss_pred cceeeehhhhccccc--ceehhccCeEEEecCCCc-------eEEEEeccccHHHHHHhchHHhhhheee--cCceeeec
Confidence 999998888777655 568888899999999999 9999999999999999999998988876 56777777
Q ss_pred eC-CeEEEEECCCCe---------EEEEecccCCceEEEEecCCCEEEEE-eCCcEEEEecC
Q 046773 402 VE-GVIRVWEVEGGE---------YMYSFRERIGEEVIAFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 402 s~-~tIrlWD~~tG~---------~l~tL~gh~~~~V~a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
+- |+|||||+.++. |+.++..|++. |..+.+|..+|+++ .|.+|.||||-
T Consensus 417 aYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgR-VFrLQFD~fqIvsssHddtILiWdFl 477 (499)
T KOG0281|consen 417 AYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGR-VFRLQFDEFQIISSSHDDTILIWDFL 477 (499)
T ss_pred cccceEEEEecccccCCcccccchHHHhhhhccce-eEEEeecceEEEeccCCCeEEEEEcC
Confidence 65 999999998863 78888899999 99999999999988 99999999984
No 2
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=3.5e-47 Score=403.05 Aligned_cols=365 Identities=19% Similarity=0.321 Sum_probs=304.8
Q ss_pred cccccccCCcchHHHHHHHHHHHHHhhhhhhHhHhhhhhHHhhcccchhccCCchhHHHhhhhccCC---------C---
Q 046773 34 RRAVNEVWPEPFVEALAAQVAIEASRSVGRLAAAAALANVFQVCSTWRAVSRSDLLWHRLTRRIWGR---------T--- 101 (453)
Q Consensus 34 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~aqv~~~W~~l~~~~~~w~~~~~~~~~~---------~--- 101 (453)
-.+.+...+.||+.-||.|+.++|+.||+ .+.|++++|||+.|+.+++++..|.++|+..-+. .
T Consensus 96 ~~~~~~~~~~dfi~~lp~el~~~il~~Ld----~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (537)
T KOG0274|consen 96 GNLLEPLGQRDFLSLLPSELSLHILSFLD----GRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIGRLPPKCEKGLPLKS 171 (537)
T ss_pred hhhcccccccchhhcccchhcccccccCC----HHHhhhhhhhcchhhhhhhccchhhhhhhhhcccCCcccCccccccc
Confidence 34447788999999999999999999987 6799999999999999999999999999763211 0
Q ss_pred CcCcchhHHHHHHHhhhhhcccccCceeeEEeeCCCCCCCCCCeEEEEEEecCCEEEEEeCCCcEEEEECCCCeEEEE-e
Q 046773 102 NLLHATWRDEYIYRHRTAQNFRTRRYTHFNLYFDPSDVDNPDGLTCRCLTLSDLYLACGFADGAVRLFDLTTRLHVRT-F 180 (453)
Q Consensus 102 ~~~~~~Wk~~y~~~~~~~~nw~~g~~~~~~~~~~~~gh~~~d~v~v~~lafs~~~LaSGS~D~TIrlWD~~tg~~~~t-l 180 (453)
....++||+.|.++.+..+||+..........+ +|++ .+ +.|.||.++++++|+.|.||++||..++.++.+ |
T Consensus 172 ~~~~~~~ks~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~-~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l 245 (537)
T KOG0274|consen 172 GFKGRPWKSFYRRRFRLSKNWRKLFRRGYKVLL---GTDD--HV-VLCLQLHDGFFKSGSDDSTLHLWDLNNGYLILTRL 245 (537)
T ss_pred ccccchhhhhhhhhhhccccccccccccceeec---ccCc--ch-hhhheeecCeEEecCCCceeEEeecccceEEEeec
Confidence 112369999999999999999999888654432 4552 23 789999999999999999999999999999999 9
Q ss_pred cCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEe
Q 046773 181 RPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAG 256 (453)
Q Consensus 181 ~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSg 256 (453)
.||.+ .|++++|. +++|++||.|.|+||||..+ | .+++.+|...+. .+...+. .+++|
T Consensus 246 ~GH~g--------~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s-g~C~~~l~gh~stv~----~~~~~~~-----~~~sg 307 (537)
T KOG0274|consen 246 VGHFG--------GVWGLAFPSGGDKLVSGSTDKTERVWDCST-GECTHSLQGHTSSVR----CLTIDPF-----LLVSG 307 (537)
T ss_pred cCCCC--------CceeEEEecCCCEEEEEecCCcEEeEecCC-CcEEEEecCCCceEE----EEEccCc-----eEeec
Confidence 99876 58889998 89999999999999999887 5 677777765442 2332221 37789
Q ss_pred eCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEcCCcEEEEECCCCceEEEEeeccCC
Q 046773 257 LAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSSRVITFDLRNQGMVLGERGYGRG 336 (453)
Q Consensus 257 S~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~ 336 (453)
|+|.||||||++++.++ +++++|+++|++|+++.+.++++|.|++|++||+.+++|+..+.||.
T Consensus 308 s~D~tVkVW~v~n~~~l--------------~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~-- 371 (537)
T KOG0274|consen 308 SRDNTVKVWDVTNGACL--------------NLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHT-- 371 (537)
T ss_pred cCCceEEEEeccCcceE--------------EEeccccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCc--
Confidence 99999999999998864 56778999999999998777888889999999999999999888865
Q ss_pred eEEEEEEecC-CEEEEEeCCCccccCcceEEEEEcCCC-eeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCC
Q 046773 337 LYVTSVDVNA-EAYIVVENRELENQNRRLAIVRRVDTF-EEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEG 413 (453)
Q Consensus 337 ~~v~~~~~~g-~~l~s~s~dg~~~~~~~~i~Iw~~~tg-~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~t 413 (453)
..|.++.+++ +.++++|.|+ +|++||+++. +|++++..|..-+..+. ..+.++++++. ++||+||.++
T Consensus 372 ~~V~sl~~~~~~~~~Sgs~D~-------~IkvWdl~~~~~c~~tl~~h~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~ 442 (537)
T KOG0274|consen 372 GRVYSLIVDSENRLLSGSLDT-------TIKVWDLRTKRKCIHTLQGHTSLVSSLL--LRDNFLVSSSADGTIKLWDAEE 442 (537)
T ss_pred ceEEEEEecCcceEEeeeecc-------ceEeecCCchhhhhhhhcCCcccccccc--cccceeEeccccccEEEeeccc
Confidence 5678888888 9999999999 9999999999 99999988876554333 24567777766 9999999999
Q ss_pred CeEEEEecc-cCCceEEEEecCCCEEEEE-eCCcEEEEecC
Q 046773 414 GEYMYSFRE-RIGEEVIAFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 414 G~~l~tL~g-h~~~~V~a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
++|++++++ |.+. |.++......++++ .|++++|||+.
T Consensus 443 ~~~~~~~~~~~~~~-v~~l~~~~~~il~s~~~~~~~l~dl~ 482 (537)
T KOG0274|consen 443 GECLRTLEGRHVGG-VSALALGKEEILCSSDDGSVKLWDLR 482 (537)
T ss_pred CceeeeeccCCccc-EEEeecCcceEEEEecCCeeEEEecc
Confidence 999999999 6677 88888764455555 99999999985
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.5e-42 Score=334.33 Aligned_cols=279 Identities=15% Similarity=0.179 Sum_probs=233.4
Q ss_pred CCCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEE--EcCCeEEEEeCCC
Q 046773 137 SDVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGII--ITDSQLIFATLDG 212 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~--f~g~~LasgS~D~ 212 (453)
.||..+ |.|++|+| ..|||||.|.|+||||+.|...+.|.+||.. .|.+|+ +||..||||+.|+
T Consensus 112 ~GH~e~----Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~--------WVlcvawsPDgk~iASG~~dg 179 (480)
T KOG0271|consen 112 AGHGEA----VLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKN--------WVLCVAWSPDGKKIASGSKDG 179 (480)
T ss_pred CCCCCc----EEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCcc--------EEEEEEECCCcchhhccccCC
Confidence 399866 88999998 5999999999999999999999999999764 566665 5688999999999
Q ss_pred CEEEEEeecCC--cceEEeeecceecC-ceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeee
Q 046773 213 DIHVAVIDDVA--NETRTAHFGSVMDD-GVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRM 289 (453)
Q Consensus 213 tIkvWd~~~~g--~~~~~~~~~~v~~~-~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~ 289 (453)
+|++||-.+.+ ..++++|.-.|..= -..+...|..++ |||+|-|++|||||+..|+++ .+
T Consensus 180 ~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~---las~skDg~vrIWd~~~~~~~--------------~~ 242 (480)
T KOG0271|consen 180 SIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRR---LASSSKDGSVRIWDTKLGTCV--------------RT 242 (480)
T ss_pred eEEEecCCCCCcccccccCcccceeEEeecccccCCCccc---eecccCCCCEEEEEccCceEE--------------EE
Confidence 99999987722 58888998776420 001334566675 899999999999999988854 35
Q ss_pred eeeeccceeEEEEcCCceE-EEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEE-----------ecC-----------
Q 046773 290 LTEFTEFVGRVRVTSHESA-VACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVD-----------VNA----------- 346 (453)
Q Consensus 290 l~~h~~~v~~v~~s~~~~~-vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~-----------~~g----------- 346 (453)
|.+|+.+|.||+..+++++ ++|-|.|||+|+...|.|++.+.||.|.+.-.+++ +.+
T Consensus 243 lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~ 322 (480)
T KOG0271|consen 243 LSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQK 322 (480)
T ss_pred eccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHH
Confidence 7899999999999988865 45668999999999998888889998866544332 223
Q ss_pred --------------CEEEEEeCCCccccCcceEEEEEcC-CCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEE
Q 046773 347 --------------EAYIVVENRELENQNRRLAIVRRVD-TFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWE 410 (453)
Q Consensus 347 --------------~~l~s~s~dg~~~~~~~~i~Iw~~~-tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD 410 (453)
++++++|.|. ++-+|+-. +-+++..+++|...|..+.|+||+++++++|- +.|||||
T Consensus 323 ~Al~rY~~~~~~~~erlVSgsDd~-------tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~ 395 (480)
T KOG0271|consen 323 KALERYEAVLKDSGERLVSGSDDF-------TLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWD 395 (480)
T ss_pred HHHHHHHHhhccCcceeEEecCCc-------eEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeee
Confidence 3599999999 99999765 44688889999988999999999999998886 9999999
Q ss_pred CCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 411 VEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 411 ~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
..||+.|.+|+||-+. |. +.+.|.|.|+|+ .|.|+|+||+.
T Consensus 396 g~tGk~lasfRGHv~~-VYqvawsaDsRLlVS~SkDsTLKvw~V~ 439 (480)
T KOG0271|consen 396 GRTGKFLASFRGHVAA-VYQVAWSADSRLLVSGSKDSTLKVWDVR 439 (480)
T ss_pred CCCcchhhhhhhccce-eEEEEeccCccEEEEcCCCceEEEEEee
Confidence 9999999999999999 87 778999999999 99999999975
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.8e-41 Score=332.06 Aligned_cols=267 Identities=16% Similarity=0.226 Sum_probs=230.9
Q ss_pred EEEEEec--CCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcC----CeEEEEeCCCCEEEEEee
Q 046773 147 CRCLTLS--DLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITD----SQLIFATLDGDIHVAVID 220 (453)
Q Consensus 147 v~~lafs--~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g----~~LasgS~D~tIkvWd~~ 220 (453)
+..+.|| ++.|||||++|++|||++.+...+.+|+||.. .|.++.|.+ ..|||||.|+++|+|+++
T Consensus 178 is~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~--------~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 178 ISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTS--------RVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred ceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEecccc--------ceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 5666776 47999999999999999999999999999875 567777753 379999999999999998
Q ss_pred cCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeE
Q 046773 221 DVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGR 299 (453)
Q Consensus 221 ~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~ 299 (453)
+.- +..+.+|...|. .|+|+|+|++ |+|+|.|.|-||||++|+..+ ....||...|.+
T Consensus 250 ~e~~l~~l~gH~~RVs----~VafHPsG~~---L~TasfD~tWRlWD~~tk~El--------------L~QEGHs~~v~~ 308 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVS----RVAFHPSGKF---LGTASFDSTWRLWDLETKSEL--------------LLQEGHSKGVFS 308 (459)
T ss_pred CCcchhhhhcchhhhe----eeeecCCCce---eeecccccchhhcccccchhh--------------Hhhcccccccce
Confidence 722 677778876654 4999999997 889999999999999999832 235789999999
Q ss_pred EEEcCCceEEEEc--CCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEE
Q 046773 300 VRVTSHESAVACT--SSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVC 377 (453)
Q Consensus 300 v~~s~~~~~vas~--d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~ 377 (453)
++|.+++-+++++ |..-||||++||.|++.+.||...++-.+|+|+|-.++++|.|+ ++||||+.-..++.
T Consensus 309 iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dn-------t~kVWDLR~r~~ly 381 (459)
T KOG0272|consen 309 IAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDN-------TCKVWDLRMRSELY 381 (459)
T ss_pred eEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCC-------cEEEeeecccccce
Confidence 9999998766654 67889999999999999988988887777888888889999998 99999999888899
Q ss_pred EEEecCCCeeEEEEeeCCC-eEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEe
Q 046773 378 RFSLRADRNVNVMGCMNQG-YALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWD 450 (453)
Q Consensus 378 ~l~~~~~~v~~~~~~~~~~-~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWD 450 (453)
++..|.+.|..+-+.|+.+ +|++++- +|+|||...+..|+++|.||.+. |. .+++|+..|+|+ .|++||||.
T Consensus 382 ~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~k-V~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 382 TIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGK-VISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccc-eEEEEeccCCceEEEeccCceeeecc
Confidence 9999999999999998555 5555554 99999999999999999999999 76 678999999999 999999995
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-39 Score=318.49 Aligned_cols=285 Identities=15% Similarity=0.211 Sum_probs=234.0
Q ss_pred hhcccccCceee-EEeeCCCCCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEE-EEecCCCCCccccccce
Q 046773 119 AQNFRTRRYTHF-NLYFDPSDVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHV-RTFRPQHSDRLGQFSRA 194 (453)
Q Consensus 119 ~~nw~~g~~~~~-~~~~~~~gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~-~tl~gh~~~~~~~~s~~ 194 (453)
.+.|...--.|. +. +||. -||.|++++| +.||||+.|++|+|||.++|+++ ++|+||.. .
T Consensus 139 vR~WD~~TeTp~~t~----KgH~----~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K--------~ 202 (480)
T KOG0271|consen 139 VRLWDLDTETPLFTC----KGHK----NWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKK--------W 202 (480)
T ss_pred EEeeccCCCCcceee----cCCc----cEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCccc--------c
Confidence 444655544433 32 5897 4589999987 59999999999999999999875 78999875 5
Q ss_pred EEEEEEc-------CCeEEEEeCCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEe
Q 046773 195 VSGIIIT-------DSQLIFATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIW 265 (453)
Q Consensus 195 V~~i~f~-------g~~LasgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvW 265 (453)
|.++++. .++|||+|.|++|+|||+.. | +.++.+|+..|. .|....+| .|||||-|+|||+|
T Consensus 203 It~Lawep~hl~p~~r~las~skDg~vrIWd~~~-~~~~~~lsgHT~~VT----CvrwGG~g----liySgS~DrtIkvw 273 (480)
T KOG0271|consen 203 ITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL-GTCVRTLSGHTASVT----CVRWGGEG----LIYSGSQDRTIKVW 273 (480)
T ss_pred eeEEeecccccCCCccceecccCCCCEEEEEccC-ceEEEEeccCccceE----EEEEcCCc----eEEecCCCceEEEE
Confidence 7788874 46899999999999999986 4 566778887764 35665554 48999999999999
Q ss_pred eCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEc-------------CC-------------------------ce
Q 046773 266 DRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVT-------------SH-------------------------ES 307 (453)
Q Consensus 266 D~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s-------------~~-------------------------~~ 307 (453)
+...|.+. +.|+||..+||.++++ ++ .+
T Consensus 274 ~a~dG~~~--------------r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erl 339 (480)
T KOG0271|consen 274 RALDGKLC--------------RELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERL 339 (480)
T ss_pred EccchhHH--------------HhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCccee
Confidence 99998843 4577888888888776 22 25
Q ss_pred EEEEcCCcEEEEECCCC-ceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCe
Q 046773 308 AVACTSSRVITFDLRNQ-GMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRN 386 (453)
Q Consensus 308 ~vas~d~tIrlWDl~t~-~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v 386 (453)
+++|+|.++-||+.... +++.+.+||..-+.-.+|+|++..+++||.|. .||+|+..+|+-+.+|.+|-..|
T Consensus 340 VSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDk-------SVkLW~g~tGk~lasfRGHv~~V 412 (480)
T KOG0271|consen 340 VSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDK-------SVKLWDGRTGKFLASFRGHVAAV 412 (480)
T ss_pred EEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeeccc-------ceeeeeCCCcchhhhhhhcccee
Confidence 66778899999998654 34444577765555556788888999999999 99999999999999999998889
Q ss_pred eEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEEE--EecCCCEEEEE-eCCcEEEEe
Q 046773 387 VNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVIA--FVGDDRHVAAS-CGTNIHLWD 450 (453)
Q Consensus 387 ~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~a--~s~d~~~lasg-~D~~IklWD 450 (453)
+.++.+.|.+.+++||. .|+|+||+.+.+..+.|+||.++ |.+ .+|||.+++|| .|+.+|||.
T Consensus 413 YqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DE-Vf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 413 YQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADE-VFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCce-EEEEEecCCCceeecCCCceEEEeec
Confidence 99999999999999887 99999999999999999999999 885 57999999999 999999995
No 6
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-37 Score=301.54 Aligned_cols=273 Identities=13% Similarity=0.147 Sum_probs=231.7
Q ss_pred CCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCC
Q 046773 138 DVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGD 213 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~t 213 (453)
||.-+ |+.+-|-| ..+|++|.|.|||+||..||++.++|+||.. +|..|+|+ |..||++|.|=.
T Consensus 106 g~r~~----vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~--------sv~di~~~a~Gk~l~tcSsDl~ 173 (406)
T KOG0295|consen 106 GHRSS----VTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTD--------SVFDISFDASGKYLATCSSDLS 173 (406)
T ss_pred ccccc----eeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhcccc--------ceeEEEEecCccEEEecCCccc
Confidence 67644 66777766 4789999999999999999999999999875 57788887 678999999999
Q ss_pred EEEEEeecC--CcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeee
Q 046773 214 IHVAVIDDV--ANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLT 291 (453)
Q Consensus 214 IkvWd~~~~--g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~ 291 (453)
+++||.++. .+..+.+|...|. .|.|-|.|.+ ++|+|.|+||+.||+.||.+. .+++
T Consensus 174 ~~LWd~~~~~~c~ks~~gh~h~vS----~V~f~P~gd~---ilS~srD~tik~We~~tg~cv--------------~t~~ 232 (406)
T KOG0295|consen 174 AKLWDFDTFFRCIKSLIGHEHGVS----SVFFLPLGDH---ILSCSRDNTIKAWECDTGYCV--------------KTFP 232 (406)
T ss_pred hhheeHHHHHHHHHHhcCccccee----eEEEEecCCe---eeecccccceeEEecccceeE--------------Eecc
Confidence 999998762 1455666655443 4899999975 889999999999999999864 5688
Q ss_pred eeccceeEEEEcCCceEEEEc--CCcEEEEECCCCceEEEEeeccCCeEEEEEEec----------C-----CEEEEEeC
Q 046773 292 EFTEFVGRVRVTSHESAVACT--SSRVITFDLRNQGMVLGERGYGRGLYVTSVDVN----------A-----EAYIVVEN 354 (453)
Q Consensus 292 ~h~~~v~~v~~s~~~~~vas~--d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~----------g-----~~l~s~s~ 354 (453)
+|..||.-|+++.++.++||. |.++++|=+.+++|...+++|.|.+.+.++.|. | ..+.++|.
T Consensus 233 ~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~Sr 312 (406)
T KOG0295|consen 233 GHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSR 312 (406)
T ss_pred CchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecc
Confidence 999999999999999888764 578999999999886656778877766665332 2 26778888
Q ss_pred CCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEEEEe-
Q 046773 355 RELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVIAFV- 432 (453)
Q Consensus 355 dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~a~s- 432 (453)
|+ +||+||+.||.|+.++.+|.+||+.++|+|.|+|+++|++ +|+|+||+.+++|+.+++.|..- |+++.
T Consensus 313 Dk-------tIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hf-vt~lDf 384 (406)
T KOG0295|consen 313 DK-------TIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHF-VTSLDF 384 (406)
T ss_pred cc-------eEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcce-eEEEec
Confidence 88 9999999999999999999999999999999999999999 99999999999999999999888 88554
Q ss_pred -cCCCEEEEE-eCCcEEEEec
Q 046773 433 -GDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 433 -~d~~~lasg-~D~~IklWDl 451 (453)
-+-.+++|| -|.++|+|..
T Consensus 385 h~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 385 HKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCCCceEEeccccceeeeeec
Confidence 455689999 9999999974
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.6e-35 Score=278.26 Aligned_cols=274 Identities=16% Similarity=0.223 Sum_probs=215.8
Q ss_pred CCCCCCCCeEEEEEEec---CCEEEEEeCCCcEEEEEC-----CCCeEEEEecCCCCCccccccceEEE--EEEcCCeEE
Q 046773 137 SDVDNPDGLTCRCLTLS---DLYLACGFADGAVRLFDL-----TTRLHVRTFRPQHSDRLGQFSRAVSG--IIITDSQLI 206 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs---~~~LaSGS~D~TIrlWD~-----~tg~~~~tl~gh~~~~~~~~s~~V~~--i~f~g~~La 206 (453)
+||+ |. |..++.. ++.|.++|.|++|-+|++ +.|..++.|+||.. .|.. +.++|....
T Consensus 12 ~gh~--d~--Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH--------~v~dv~~s~dg~~al 79 (315)
T KOG0279|consen 12 EGHT--DW--VTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSH--------FVSDVVLSSDGNFAL 79 (315)
T ss_pred cCCC--ce--EEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccce--------EecceEEccCCceEE
Confidence 3897 45 6677664 479999999999999986 46777899999754 3444 456799999
Q ss_pred EEeCCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcce
Q 046773 207 FATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTV 284 (453)
Q Consensus 207 sgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v 284 (453)
|+|.|+++++||+++ | .+.+.+|+..|. .|+|+||.+. ++|||.|+||++||+.+++.++-+.
T Consensus 80 S~swD~~lrlWDl~~-g~~t~~f~GH~~dVl----sva~s~dn~q---ivSGSrDkTiklwnt~g~ck~t~~~------- 144 (315)
T KOG0279|consen 80 SASWDGTLRLWDLAT-GESTRRFVGHTKDVL----SVAFSTDNRQ---IVSGSRDKTIKLWNTLGVCKYTIHE------- 144 (315)
T ss_pred eccccceEEEEEecC-CcEEEEEEecCCceE----EEEecCCCce---eecCCCcceeeeeeecccEEEEEec-------
Confidence 999999999999998 6 455667887765 5999999986 7899999999999998888553110
Q ss_pred eeeeeeeeeccceeEEEEcCCc----eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCcccc
Q 046773 285 MGWRMLTEFTEFVGRVRVTSHE----SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQ 360 (453)
Q Consensus 285 ~~w~~l~~h~~~v~~v~~s~~~----~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~ 360 (453)
.+++++|+||+|+|+. ++++|.|++||+||+++.+....+.||.+.+....++|||...+++..|+
T Consensus 145 ------~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg---- 214 (315)
T KOG0279|consen 145 ------DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDG---- 214 (315)
T ss_pred ------CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCc----
Confidence 1237899999999984 35557799999999998665444577777666667889999999998899
Q ss_pred CcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeCCeEEEEECCCCeEEEEec----cc---CCceEE----
Q 046773 361 NRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYMYSFR----ER---IGEEVI---- 429 (453)
Q Consensus 361 ~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~~tIrlWD~~tG~~l~tL~----gh---~~~~V~---- 429 (453)
.+.+||++.++++.++.. .+.|.+++|+|+.-.+.++.+..|||||+++++++.+|+ |. .+. +.
T Consensus 215 ---~~~LwdL~~~k~lysl~a-~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~-~~clsl 289 (315)
T KOG0279|consen 215 ---EAMLWDLNEGKNLYSLEA-FDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGD-PICLSL 289 (315)
T ss_pred ---eEEEEEccCCceeEeccC-CCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCC-cEEEEE
Confidence 999999999999888753 355889999987433333444779999999999988774 22 112 22
Q ss_pred EEecCCCEEEEE-eCCcEEEEecC
Q 046773 430 AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 430 a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
++++||..|-+| .|+.|++|.+.
T Consensus 290 aws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 290 AWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEcCCCcEEEeeecCCcEEEEEee
Confidence 677999999999 99999999875
No 8
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.4e-35 Score=274.72 Aligned_cols=260 Identities=17% Similarity=0.235 Sum_probs=205.0
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcC--CeEEEEeCCCCEEEEEeecCC---cceEEe
Q 046773 155 LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITD--SQLIFATLDGDIHVAVIDDVA---NETRTA 229 (453)
Q Consensus 155 ~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g--~~LasgS~D~tIkvWd~~~~g---~~~~~~ 229 (453)
-+|||+|||.|||+|.+.||+|.+|++ |.. ..|.++.+.+ +.||.| .-..||++|+++.. +.++.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiq-h~d-------sqVNrLeiTpdk~~LAaa-~~qhvRlyD~~S~np~Pv~t~e~ 81 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQ-HPD-------SQVNRLEITPDKKDLAAA-GNQHVRLYDLNSNNPNPVATFEG 81 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEe-cCc-------cceeeEEEcCCcchhhhc-cCCeeEEEEccCCCCCceeEEec
Confidence 489999999999999999999999997 433 2688887654 456655 45679999999832 344555
Q ss_pred eecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc--e
Q 046773 230 HFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--S 307 (453)
Q Consensus 230 ~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~ 307 (453)
|+..|. .|.|..|||| +++||.|+|+||||++.-.+-+ +-.|.++|++|-++|+. +
T Consensus 82 h~kNVt----aVgF~~dgrW---MyTgseDgt~kIWdlR~~~~qR---------------~~~~~spVn~vvlhpnQteL 139 (311)
T KOG0315|consen 82 HTKNVT----AVGFQCDGRW---MYTGSEDGTVKIWDLRSLSCQR---------------NYQHNSPVNTVVLHPNQTEL 139 (311)
T ss_pred cCCceE----EEEEeecCeE---EEecCCCceEEEEeccCcccch---------------hccCCCCcceEEecCCcceE
Confidence 655443 5999999998 8999999999999999854211 22566899999999865 3
Q ss_pred EEEEcCCcEEEEECCCCceEEEEeec-cCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCC------eeEEEEE
Q 046773 308 AVACTSSRVITFDLRNQGMVLGERGY-GRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTF------EEVCRFS 380 (453)
Q Consensus 308 ~vas~d~tIrlWDl~t~~~~~~~~g~-~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg------~~v~~l~ 380 (453)
+++.-++.||+|||.+..|.+.+... ...+....+.++|.+++.+..-| +..+|++-+. +++..++
T Consensus 140 is~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG-------~cyvW~l~~~~~~s~l~P~~k~~ 212 (311)
T KOG0315|consen 140 ISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKG-------NCYVWRLLNHQTASELEPVHKFQ 212 (311)
T ss_pred EeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCc-------cEEEEEccCCCccccceEhhhee
Confidence 44444589999999998776554211 11222345679999999998888 9999998754 4566778
Q ss_pred ecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCC-eEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEecCC
Q 046773 381 LRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGG-EYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFGA 453 (453)
Q Consensus 381 ~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG-~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl~~ 453 (453)
.|...+....++|+.++|++|++ .|+|||++++- +.-..|+||..+ || +||.|+++|++| +|+++||||+.+
T Consensus 213 ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rW-vWdc~FS~dg~YlvTassd~~~rlW~~~~ 289 (311)
T KOG0315|consen 213 AHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRW-VWDCAFSADGEYLVTASSDHTARLWDLSA 289 (311)
T ss_pred cccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCce-EEeeeeccCccEEEecCCCCceeeccccc
Confidence 88777888899999999999988 99999999987 666788999999 99 799999999999 999999999863
No 9
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=3.2e-37 Score=297.92 Aligned_cols=225 Identities=18% Similarity=0.275 Sum_probs=187.9
Q ss_pred cceEEEEEEcCCeEEEEeCCCCEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCC
Q 046773 192 SRAVSGIIITDSQLIFATLDGDIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAE 270 (453)
Q Consensus 192 s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg 270 (453)
+..|-++++|+.+++||+.|+||||||.++.- ...+.+|+|.|. .+.|+. + .|+|||.|.||+|||++||
T Consensus 197 skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVL----CLqyd~--r---viisGSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 197 SKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVL----CLQYDE--R---VIVSGSSDSTVRVWDVNTG 267 (499)
T ss_pred CCceEEEEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEE----eeeccc--e---EEEecCCCceEEEEeccCC
Confidence 34688999999999999999999999998732 577889999874 255543 4 4889999999999999999
Q ss_pred cEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEcCCcEEEEECCCCceE---EEEeeccCCeEEEEEEecCC
Q 046773 271 EVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSSRVITFDLRNQGMV---LGERGYGRGLYVTSVDVNAE 347 (453)
Q Consensus 271 ~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~d~tIrlWDl~t~~~~---~~~~g~~~~~~v~~~~~~g~ 347 (453)
+.+ ++|.+|++.|-.++|+.+-.++.|-|.+|++||+.+..-+ +.++|| ...|+.++|+..
T Consensus 268 e~l--------------~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGH--rAaVNvVdfd~k 331 (499)
T KOG0281|consen 268 EPL--------------NTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGH--RAAVNVVDFDDK 331 (499)
T ss_pred chh--------------hHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhh--hhheeeeccccc
Confidence 954 4678999999999999854445455789999999876421 223555 567889999999
Q ss_pred EEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEee--CCCeEEEEeC-CeEEEEECCCCeEEEEecccC
Q 046773 348 AYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCM--NQGYALMCVE-GVIRVWEVEGGEYMYSFRERI 424 (453)
Q Consensus 348 ~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~--~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~ 424 (453)
.+++||+|. |||+|+..|+++++++.+|.-++ .|. .++.++++|+ +||||||++.|+||+.|+||.
T Consensus 332 yIVsASgDR-------TikvW~~st~efvRtl~gHkRGI----AClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHE 400 (499)
T KOG0281|consen 332 YIVSASGDR-------TIKVWSTSTCEFVRTLNGHKRGI----ACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHE 400 (499)
T ss_pred eEEEecCCc-------eEEEEeccceeeehhhhcccccc----eehhccCeEEEecCCCceEEEEeccccHHHHHHhchH
Confidence 999999999 99999999999999998876443 343 3566677776 999999999999999999999
Q ss_pred CceEEEEecCCCEEEEE-eCCcEEEEecCC
Q 046773 425 GEEVIAFVGDDRHVAAS-CGTNIHLWDFGA 453 (453)
Q Consensus 425 ~~~V~a~s~d~~~lasg-~D~~IklWDl~~ 453 (453)
+- |.++.+|.++|+|| +||+||||||.|
T Consensus 401 eL-vRciRFd~krIVSGaYDGkikvWdl~a 429 (499)
T KOG0281|consen 401 EL-VRCIRFDNKRIVSGAYDGKIKVWDLQA 429 (499)
T ss_pred Hh-hhheeecCceeeeccccceEEEEeccc
Confidence 88 99999999999999 999999999974
No 10
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=7.8e-34 Score=275.46 Aligned_cols=271 Identities=15% Similarity=0.167 Sum_probs=214.6
Q ss_pred CCCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCC--eEEEEeCCC
Q 046773 137 SDVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDS--QLIFATLDG 212 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~--~LasgS~D~ 212 (453)
+||. .||.|++++| .+++|||.|+||||||+.||+...||.||-. .|++++++.+ +|.+++.|+
T Consensus 148 ~gHl----gWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~--------~vr~vavS~rHpYlFs~gedk 215 (460)
T KOG0285|consen 148 SGHL----GWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIE--------TVRGVAVSKRHPYLFSAGEDK 215 (460)
T ss_pred hhcc----ceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhh--------eeeeeeecccCceEEEecCCC
Confidence 3886 5799999997 6999999999999999999999999999754 6899999875 799999999
Q ss_pred CEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeee
Q 046773 213 DIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLT 291 (453)
Q Consensus 213 tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~ 291 (453)
.||-||++..- |+-+.+|...|. .++..|.-+. |++|+.|.|+||||++|.... ++|.
T Consensus 216 ~VKCwDLe~nkvIR~YhGHlS~V~----~L~lhPTldv---l~t~grDst~RvWDiRtr~~V--------------~~l~ 274 (460)
T KOG0285|consen 216 QVKCWDLEYNKVIRHYHGHLSGVY----CLDLHPTLDV---LVTGGRDSTIRVWDIRTRASV--------------HVLS 274 (460)
T ss_pred eeEEEechhhhhHHHhccccceeE----EEecccccee---EEecCCcceEEEeeecccceE--------------EEec
Confidence 99999998733 677778876664 4777777553 899999999999999998732 5688
Q ss_pred eeccceeEEEEcCC--ceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEE
Q 046773 292 EFTEFVGRVRVTSH--ESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRR 369 (453)
Q Consensus 292 ~h~~~v~~v~~s~~--~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~ 369 (453)
||+.+|.+|.+.|- .++++|.|.||||||++.|+...++..|...+...++.|.-..++|+|.| +|+-|+
T Consensus 275 GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d--------nik~w~ 346 (460)
T KOG0285|consen 275 GHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD--------NIKQWK 346 (460)
T ss_pred CCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc--------cceecc
Confidence 99999999998742 35666789999999999998766665555444445556666666766655 588999
Q ss_pred cCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEe---c--cc---CCceEE--EEecCCCEE
Q 046773 370 VDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSF---R--ER---IGEEVI--AFVGDDRHV 438 (453)
Q Consensus 370 ~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL---~--gh---~~~~V~--a~s~d~~~l 438 (453)
++.|+.++.+.+|...+.++.... +++++++++ ++|-.||.++|-+.+.+ . |- ..+ |. +|...+.+|
T Consensus 347 ~p~g~f~~nlsgh~~iintl~~ns-D~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEag-I~as~fDktg~rl 424 (460)
T KOG0285|consen 347 LPEGEFLQNLSGHNAIINTLSVNS-DGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAG-IFASCFDKTGSRL 424 (460)
T ss_pred CCccchhhccccccceeeeeeecc-CceEEEcCCceEEEEEecCcCcccccccccccCCccccccc-eeEEeecccCceE
Confidence 999998888888877677776654 467788888 99999999999664443 2 21 122 44 455677899
Q ss_pred EEE-eCCcEEEEe
Q 046773 439 AAS-CGTNIHLWD 450 (453)
Q Consensus 439 asg-~D~~IklWD 450 (453)
+++ .|++||+|.
T Consensus 425 it~eadKtIk~~k 437 (460)
T KOG0285|consen 425 ITGEADKTIKMYK 437 (460)
T ss_pred EeccCCcceEEEe
Confidence 999 999999996
No 11
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.6e-33 Score=278.20 Aligned_cols=246 Identities=11% Similarity=0.133 Sum_probs=203.5
Q ss_pred ccccCceeeEEeeCCCCCCCCCCeEEEEEEecCC----EEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEE
Q 046773 122 FRTRRYTHFNLYFDPSDVDNPDGLTCRCLTLSDL----YLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSG 197 (453)
Q Consensus 122 w~~g~~~~~~~~~~~~gh~~~d~v~v~~lafs~~----~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~ 197 (453)
|..-.+... -.| .||+. . |.++.|.|. .|||+|.|+|||||++.+-..+..|.||.. .|..
T Consensus 202 W~~~~~~~~-~~l--~gH~~--~--v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~--------RVs~ 266 (459)
T KOG0272|consen 202 WSVPQCNLL-QTL--RGHTS--R--VGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLA--------RVSR 266 (459)
T ss_pred eecCCccee-EEE--ecccc--c--eeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchh--------hhee
Confidence 555555322 222 38983 3 789999863 799999999999999999999999998754 5666
Q ss_pred EEE--cCCeEEEEeCCCCEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEe
Q 046773 198 III--TDSQLIFATLDGDIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFV 274 (453)
Q Consensus 198 i~f--~g~~LasgS~D~tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~ 274 (453)
++| +|+.|+|+|.|.|-++||+++.- +....+|...|. .++|.|||.. ++||+.|..-||||++||++..
T Consensus 267 VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~----~iaf~~DGSL---~~tGGlD~~~RvWDlRtgr~im 339 (459)
T KOG0272|consen 267 VAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVF----SIAFQPDGSL---AATGGLDSLGRVWDLRTGRCIM 339 (459)
T ss_pred eeecCCCceeeecccccchhhcccccchhhHhhcccccccc----eeEecCCCce---eeccCccchhheeecccCcEEE
Confidence 776 58899999999999999999821 455667877765 4899999985 7899999999999999999532
Q ss_pred cccccCCcceeeeeeeeeeccceeEEEEcCCceEE--EEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEe-cCCEEEE
Q 046773 275 GGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAV--ACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDV-NAEAYIV 351 (453)
Q Consensus 275 g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~v--as~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~-~g~~l~s 351 (453)
.|.+|..+|..|.|+|++..+ +|+|+++|||||+...++.+..+|..-+.-..|+| .|..|++
T Consensus 340 --------------~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~T 405 (459)
T KOG0272|consen 340 --------------FLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVT 405 (459)
T ss_pred --------------EecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEE
Confidence 377899999999999998644 46789999999998887776666654433355676 5678999
Q ss_pred EeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEE
Q 046773 352 VENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWE 410 (453)
Q Consensus 352 ~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD 410 (453)
+|.|. +++||...+.+++.++.+|++.|.++..++++.++++++- +|||+|.
T Consensus 406 asyD~-------t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 406 ASYDN-------TVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cccCc-------ceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999 9999999999999999999999999999999999888876 9999995
No 12
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=5.2e-32 Score=287.40 Aligned_cols=254 Identities=15% Similarity=0.174 Sum_probs=207.1
Q ss_pred CCCCCCCCeEEEEEEec--CCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCE
Q 046773 137 SDVDNPDGLTCRCLTLS--DLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDI 214 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs--~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tI 214 (453)
.||.. + |++++|. +++|+|||.|+|+||||+.+|+|.++|.||.. .|.++.+.+-.+++||.|.||
T Consensus 246 ~GH~g--~--V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~s--------tv~~~~~~~~~~~sgs~D~tV 313 (537)
T KOG0274|consen 246 VGHFG--G--VWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTS--------SVRCLTIDPFLLVSGSRDNTV 313 (537)
T ss_pred cCCCC--C--ceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCc--------eEEEEEccCceEeeccCCceE
Confidence 49984 4 7899998 79999999999999999999999999999765 688888889999999999999
Q ss_pred EEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeee
Q 046773 215 HVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEF 293 (453)
Q Consensus 215 kvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h 293 (453)
|||+++++- ++++++|.+.|. .|..+ +. .|+|||.|++|+|||+.+++++ ++|++|
T Consensus 314 kVW~v~n~~~l~l~~~h~~~V~----~v~~~--~~---~lvsgs~d~~v~VW~~~~~~cl--------------~sl~gH 370 (537)
T KOG0274|consen 314 KVWDVTNGACLNLLRGHTGPVN----CVQLD--EP---LLVSGSYDGTVKVWDPRTGKCL--------------KSLSGH 370 (537)
T ss_pred EEEeccCcceEEEeccccccEE----EEEec--CC---EEEEEecCceEEEEEhhhceee--------------eeecCC
Confidence 999999732 777888887764 24444 22 4889999999999999998865 578899
Q ss_pred ccceeEEEEcC-CceEEEEcCCcEEEEECCCC-ceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcC
Q 046773 294 TEFVGRVRVTS-HESAVACTSSRVITFDLRNQ-GMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVD 371 (453)
Q Consensus 294 ~~~v~~v~~s~-~~~~vas~d~tIrlWDl~t~-~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~ 371 (453)
+.+|.++.+++ ...+++|.|++||+||+++. +|++++.+| ...|..+.+.++.|++++.|+ +||+||.+
T Consensus 371 ~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h--~~~v~~l~~~~~~Lvs~~aD~-------~Ik~WD~~ 441 (537)
T KOG0274|consen 371 TGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGH--TSLVSSLLLRDNFLVSSSADG-------TIKLWDAE 441 (537)
T ss_pred cceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCC--cccccccccccceeEeccccc-------cEEEeecc
Confidence 99999999998 77888899999999999999 898887655 456788889999999999999 99999999
Q ss_pred CCeeEEEEEec-CCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEEEEecCCC
Q 046773 372 TFEEVCRFSLR-ADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVIAFVGDDR 436 (453)
Q Consensus 372 tg~~v~~l~~~-~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~a~s~d~~ 436 (453)
++++++++..+ -..+..+.+. ...++.++. ++++|||+.+|++.+++-.+.....+...+.++
T Consensus 442 ~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l~~~~~~~~~~~~~~~~ 506 (537)
T KOG0274|consen 442 EGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTLLSTDLGATWGVAPSSP 506 (537)
T ss_pred cCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhhhhcccccccccccCCC
Confidence 99999999874 2333333322 133444444 999999999999999886555442344445444
No 13
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.4e-30 Score=246.00 Aligned_cols=272 Identities=13% Similarity=0.129 Sum_probs=226.3
Q ss_pred CCCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE--cCCeEEEEeCCC
Q 046773 137 SDVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATLDG 212 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~D~ 212 (453)
+||.+- |+|+.+++ ++|+|+|.|+.+-|||.-|....+-+.-.. ..|-+.+| +|..+|.|++|+
T Consensus 52 kGH~~K----i~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s--------~WVMtCA~sPSg~~VAcGGLdN 119 (343)
T KOG0286|consen 52 KGHLNK----IYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPS--------SWVMTCAYSPSGNFVACGGLDN 119 (343)
T ss_pred cccccc----eeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCc--------eeEEEEEECCCCCeEEecCcCc
Confidence 499854 78888876 699999999999999999988776664322 35655554 678999999999
Q ss_pred CEEEEEeecC---C----cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCccee
Q 046773 213 DIHVAVIDDV---A----NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVM 285 (453)
Q Consensus 213 tIkvWd~~~~---g----~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~ 285 (453)
.+-|+++.+. | .+.+.+|++.+. ...|-+|++ |.+||.|.|.-+||+++|+...
T Consensus 120 ~Csiy~ls~~d~~g~~~v~r~l~gHtgylS----cC~f~dD~~----ilT~SGD~TCalWDie~g~~~~----------- 180 (343)
T KOG0286|consen 120 KCSIYPLSTRDAEGNVRVSRELAGHTGYLS----CCRFLDDNH----ILTGSGDMTCALWDIETGQQTQ----------- 180 (343)
T ss_pred eeEEEecccccccccceeeeeecCccceeE----EEEEcCCCc----eEecCCCceEEEEEcccceEEE-----------
Confidence 9999998752 2 244667888764 367888876 6799999999999999999432
Q ss_pred eeeeeeeeccceeEEEEcC---CceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCc
Q 046773 286 GWRMLTEFTEFVGRVRVTS---HESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNR 362 (453)
Q Consensus 286 ~w~~l~~h~~~v~~v~~s~---~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~ 362 (453)
.+.||++-|-++.++| +..++++.|.+.||||++.+.|..++.||...+...+|-|+|..++++|.|+
T Consensus 181 ---~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~------ 251 (343)
T KOG0286|consen 181 ---VFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDA------ 251 (343)
T ss_pred ---EecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCc------
Confidence 3558888899999987 3356667789999999999999888888888887788999999999999999
Q ss_pred ceEEEEEcCCCeeEEEEEecC--CCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCE
Q 046773 363 RLAIVRRVDTFEEVCRFSLRA--DRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRH 437 (453)
Q Consensus 363 ~~i~Iw~~~tg~~v~~l~~~~--~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~ 437 (453)
++|++|+...+.+..+.... ..+.+++|+..|++|.++.. .++.+||.-.++....|.||.+. |. .++|||.-
T Consensus 252 -tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNR-vScl~~s~DG~a 329 (343)
T KOG0286|consen 252 -TCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENR-VSCLGVSPDGMA 329 (343)
T ss_pred -eeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCe-eEEEEECCCCcE
Confidence 99999999988887775322 33788999999999988877 99999999999999999999998 88 56799999
Q ss_pred EEEE-eCCcEEEEe
Q 046773 438 VAAS-CGTNIHLWD 450 (453)
Q Consensus 438 lasg-~D~~IklWD 450 (453)
|+|| .|.++|||.
T Consensus 330 v~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 330 VATGSWDSTLRIWA 343 (343)
T ss_pred EEecchhHheeecC
Confidence 9999 999999994
No 14
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=8.9e-31 Score=275.62 Aligned_cols=269 Identities=16% Similarity=0.225 Sum_probs=220.7
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCe--EEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEee
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRL--HVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVID 220 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~--~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~ 220 (453)
|.|+.|++ +.|++++.|++|++|++.+++ +++++.+|.. .|..++|+ ++.|++||.|++|||||+.
T Consensus 162 v~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~--------~v~~~~fs~d~~~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 162 VTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTR--------GVSDVAFSPDGSYLLSGSDDKTLRIWDLK 233 (456)
T ss_pred eEEEEEcCCCCeEEEccCCCcEEEeecccccchhhcccccccc--------ceeeeEECCCCcEEEEecCCceEEEeecc
Confidence 77888875 699999999999999999999 8888887764 57777774 6789999999999999995
Q ss_pred cCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeecccee
Q 046773 221 DVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVG 298 (453)
Q Consensus 221 ~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~ 298 (453)
..+ ..++.+|...+. .++|+|+|+. |+|||.|+||||||++++++. .+|.+|.+.|.
T Consensus 234 ~~~~~~~~l~gH~~~v~----~~~f~p~g~~---i~Sgs~D~tvriWd~~~~~~~--------------~~l~~hs~~is 292 (456)
T KOG0266|consen 234 DDGRNLKTLKGHSTYVT----SVAFSPDGNL---LVSGSDDGTVRIWDVRTGECV--------------RKLKGHSDGIS 292 (456)
T ss_pred CCCeEEEEecCCCCceE----EEEecCCCCE---EEEecCCCcEEEEeccCCeEE--------------EeeeccCCceE
Confidence 434 677888988774 5999999975 889999999999999998864 35789999999
Q ss_pred EEEEcCCce--EEEEcCCcEEEEECCCCc--eEEEEeeccCC--eEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCC
Q 046773 299 RVRVTSHES--AVACTSSRVITFDLRNQG--MVLGERGYGRG--LYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDT 372 (453)
Q Consensus 299 ~v~~s~~~~--~vas~d~tIrlWDl~t~~--~~~~~~g~~~~--~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~t 372 (453)
++.|++++. +++|.|++|++||+.++. |+....++... +...+|++++..+++++.|+ ++++|++..
T Consensus 293 ~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~-------~~~~w~l~~ 365 (456)
T KOG0266|consen 293 GLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDR-------TLKLWDLRS 365 (456)
T ss_pred EEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCC-------eEEEEEccC
Confidence 999998764 444567999999999998 44554444333 45566888899999999999 999999999
Q ss_pred CeeEEEEEecCCCee---EEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEeccc-CCceEE--EEecCCCEEEEE---e
Q 046773 373 FEEVCRFSLRADRNV---NVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRER-IGEEVI--AFVGDDRHVAAS---C 442 (453)
Q Consensus 373 g~~v~~l~~~~~~v~---~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh-~~~~V~--a~s~d~~~lasg---~ 442 (453)
+.++.....|...++ ....++.+.++++++. +.|++||+.++..+..+.+| ... |. ++.|....++++ .
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~-~~~~~~~~~~~~~~s~s~~~ 444 (456)
T KOG0266|consen 366 GKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAA-VSDLSSHPTENLIASSSFEG 444 (456)
T ss_pred CcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCc-eeccccCCCcCeeeecCcCC
Confidence 999999888876532 2333456777777777 99999999999999999999 655 54 677899999887 4
Q ss_pred CCcEEEEecC
Q 046773 443 GTNIHLWDFG 452 (453)
Q Consensus 443 D~~IklWDl~ 452 (453)
|+.|++|...
T Consensus 445 d~~~~~w~~~ 454 (456)
T KOG0266|consen 445 DGLIRLWKYD 454 (456)
T ss_pred CceEEEecCC
Confidence 9999999753
No 15
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.98 E-value=2.1e-30 Score=253.33 Aligned_cols=280 Identities=12% Similarity=0.153 Sum_probs=212.7
Q ss_pred EEEEEEecCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEE---EcC--CeEEEEeCCCCEEEEEee
Q 046773 146 TCRCLTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGII---ITD--SQLIFATLDGDIHVAVID 220 (453)
Q Consensus 146 ~v~~lafs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~---f~g--~~LasgS~D~tIkvWd~~ 220 (453)
||.+++-.++.|.||+||+++||||. .|++.+++.||.. .+.+++ .+. ..+++||.|+|+++|-++
T Consensus 107 WVSsv~~~~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~--------~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~ 177 (423)
T KOG0313|consen 107 WVSSVKGASKWILTGSYDGTSRIWDL-KGKSIKTIVGHTG--------PIKSVAWVIKNSSSCLFVSASMDQTLRLWKWN 177 (423)
T ss_pred hhhhhcccCceEEEeecCCeeEEEec-CCceEEEEecCCc--------ceeeeEEEecCCccceEEEecCCceEEEEEec
Confidence 37899989999999999999999998 5899999999865 344333 222 259999999999999987
Q ss_pred cCC-----cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc--EEecccc-------cCC--cce
Q 046773 221 DVA-----NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE--VFVGGDL-------TDH--NTV 284 (453)
Q Consensus 221 ~~g-----~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~--~~~g~~l-------~~~--~~v 284 (453)
... ++..++|...|. .|+..++|.. ++|||.|++|+||+.++.. .+..-+- ... .+-
T Consensus 178 ~~~~~~~~~~~~~GHk~~V~----sVsv~~sgtr---~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r 250 (423)
T KOG0313|consen 178 VGENKVKALKVCRGHKRSVD----SVSVDSSGTR---FCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTR 250 (423)
T ss_pred CchhhhhHHhHhccccccee----EEEecCCCCe---EEeecccceeeecccCCCccccccccchhhhhhhhhhhccccc
Confidence 621 344557877664 4788888876 7899999999999955433 2211100 000 000
Q ss_pred eeeeeeeeeccceeEEEEcCCce-EEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcc
Q 046773 285 MGWRMLTEFTEFVGRVRVTSHES-AVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRR 363 (453)
Q Consensus 285 ~~w~~l~~h~~~v~~v~~s~~~~-~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~ 363 (453)
...-+|.||+++|.+|.+++.+. .++|.|.|||.|||+++++..+..+. ......++.+..+.++++|.|.
T Consensus 251 ~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gssdr------- 322 (423)
T KOG0313|consen 251 TPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASGSSDR------- 322 (423)
T ss_pred CceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecC-cceeEeecccccceeeecCCCC-------
Confidence 11247899999999999987554 55677999999999999987665332 1233344556667889999988
Q ss_pred eEEEEEcCCCe---eEEEEEecCCCeeEEEEeeCCCeEEEE-eC-CeEEEEECCCCe-EEEEecccCCceEEEEe-cCCC
Q 046773 364 LAIVRRVDTFE---EVCRFSLRADRNVNVMGCMNQGYALMC-VE-GVIRVWEVEGGE-YMYSFRERIGEEVIAFV-GDDR 436 (453)
Q Consensus 364 ~i~Iw~~~tg~---~v~~l~~~~~~v~~~~~~~~~~~lls~-s~-~tIrlWD~~tG~-~l~tL~gh~~~~V~a~s-~d~~ 436 (453)
.+|+||..++. ..++|.+|.++|.++-.+|...+++.+ +- +++||||+.+-+ .|+++.+|.+. |.++. .++.
T Consensus 323 ~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DK-vl~vdW~~~~ 401 (423)
T KOG0313|consen 323 HIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDK-VLSVDWNEGG 401 (423)
T ss_pred ceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCce-EEEEeccCCc
Confidence 99999988763 456788899999999999977766644 43 999999999987 89999999888 87766 5777
Q ss_pred EEEEE-eCCcEEEEe
Q 046773 437 HVAAS-CGTNIHLWD 450 (453)
Q Consensus 437 ~lasg-~D~~IklWD 450 (453)
.|+|| .|++|+|..
T Consensus 402 ~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 402 LIVSGGADNKLRIFK 416 (423)
T ss_pred eEEeccCcceEEEec
Confidence 89999 999999975
No 16
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=5.2e-31 Score=276.93 Aligned_cols=260 Identities=19% Similarity=0.287 Sum_probs=216.3
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCC-
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVA- 223 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g- 223 (453)
+.|..|++ ..||.|-.|..|++|.+..- .++.+++-. .+ ..+-+.|.|-...+-|-+..+
T Consensus 381 v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~lk~~~---------~l-------~~~d~~sad~~~~~~D~~~~~~ 443 (707)
T KOG0263|consen 381 VTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKLKDAS---------DL-------SNIDTESADVDVDMLDDDSSGT 443 (707)
T ss_pred ceeEeecCCcchhhccccccEEEEEecchh-hhccccchh---------hh-------ccccccccchhhhhccccCCce
Confidence 78999987 58999999999999999654 466665311 11 123344455444444444433
Q ss_pred cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEc
Q 046773 224 NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVT 303 (453)
Q Consensus 224 ~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s 303 (453)
..++.+|++.|. ...|+|+.++ |.|+|.|.|||||.+.|..++. ...||..||..|+|+
T Consensus 444 ~~~L~GH~GPVy----g~sFsPd~rf---LlScSED~svRLWsl~t~s~~V--------------~y~GH~~PVwdV~F~ 502 (707)
T KOG0263|consen 444 SRTLYGHSGPVY----GCSFSPDRRF---LLSCSEDSSVRLWSLDTWSCLV--------------IYKGHLAPVWDVQFA 502 (707)
T ss_pred eEEeecCCCcee----eeeecccccc---eeeccCCcceeeeecccceeEE--------------EecCCCcceeeEEec
Confidence 466889999887 3799999997 8899999999999999988543 245889999999999
Q ss_pred CCce--EEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEe
Q 046773 304 SHES--AVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSL 381 (453)
Q Consensus 304 ~~~~--~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~ 381 (453)
|.+. +++|.|+|.|||......-++.+.||-..+.+..|.|+.+.++++|+|. ++|+||+.+|..++.|.+
T Consensus 503 P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~-------tVRlWDv~~G~~VRiF~G 575 (707)
T KOG0263|consen 503 PRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDR-------TVRLWDVSTGNSVRIFTG 575 (707)
T ss_pred CCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCc-------eEEEEEcCCCcEEEEecC
Confidence 9985 5567789999999987655454688887888888999999999999999 999999999999999999
Q ss_pred cCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 382 RADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 382 ~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
|...|.+++++|+|++|++++. +.|+|||+.+|+.+.+|.+|++. |. +|+.||.+||+| .|++|+|||+.
T Consensus 576 H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~t-i~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 576 HKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGT-IYSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred CCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCc-eeEEEEecCCCEEEecCCCCeEEEEEch
Confidence 9999999999999999999888 99999999999999999999888 87 678999999999 99999999984
No 17
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=3.4e-30 Score=268.57 Aligned_cols=287 Identities=19% Similarity=0.307 Sum_probs=218.8
Q ss_pred CCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCC----eEEEEeCCC
Q 046773 139 VDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDS----QLIFATLDG 212 (453)
Q Consensus 139 h~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~----~LasgS~D~ 212 (453)
|+-| |.-++|+| ..||||+.|++|||||+..+.|.+.|+||.+ -|+++.|.++ .|++|..|+
T Consensus 104 He~P----vi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gG--------vVssl~F~~~~~~~lL~sg~~D~ 171 (775)
T KOG0319|consen 104 HEAP----VITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGG--------VVSSLLFHPHWNRWLLASGATDG 171 (775)
T ss_pred cCCC----eEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCc--------eEEEEEeCCccchhheeecCCCc
Confidence 7777 66788876 6999999999999999999999999999765 5788999864 589999999
Q ss_pred CEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc---EEe-------------
Q 046773 213 DIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE---VFV------------- 274 (453)
Q Consensus 213 tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~---~~~------------- 274 (453)
++++||+++.. .++.+.|...+. .++|++|+.. +++++.|+.|-|||+.+-+ ++.
T Consensus 172 ~v~vwnl~~~~tcl~~~~~H~S~vt----sL~~~~d~~~---~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~ 244 (775)
T KOG0319|consen 172 TVRVWNLNDKRTCLHTMILHKSAVT----SLAFSEDSLE---LLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLRE 244 (775)
T ss_pred eEEEEEcccCchHHHHHHhhhhhee----eeeeccCCce---EEEeccCcEEEEeehhhhhhhheechhhheeeEEEech
Confidence 99999998522 355566655543 3677777653 5566666666666664322 000
Q ss_pred ------------cc-----------------------------------------------------c------------
Q 046773 275 ------------GG-----------------------------------------------------D------------ 277 (453)
Q Consensus 275 ------------g~-----------------------------------------------------~------------ 277 (453)
|+ +
T Consensus 245 ~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~nd 324 (775)
T KOG0319|consen 245 ELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYND 324 (775)
T ss_pred hcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCch
Confidence 00 0
Q ss_pred ----------------------------------------------c------------cCCcceeeee-----------
Q 046773 278 ----------------------------------------------L------------TDHNTVMGWR----------- 288 (453)
Q Consensus 278 ----------------------------------------------l------------~~~~~v~~w~----------- 288 (453)
| ..++++..|+
T Consensus 325 EI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~ 404 (775)
T KOG0319|consen 325 EILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCV 404 (775)
T ss_pred hheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhh
Confidence 0 0123444453
Q ss_pred -eeeeeccceeEEEEcC---CceEEEEcCCcEEEEECCCCc-----eEE----EEeeccCCeEEEEEEecCCEEEEEeCC
Q 046773 289 -MLTEFTEFVGRVRVTS---HESAVACTSSRVITFDLRNQG-----MVL----GERGYGRGLYVTSVDVNAEAYIVVENR 355 (453)
Q Consensus 289 -~l~~h~~~v~~v~~s~---~~~~vas~d~tIrlWDl~t~~-----~~~----~~~g~~~~~~v~~~~~~g~~l~s~s~d 355 (453)
+..+|++.|++|+++- ..++++|.|.|||+|++...+ -.+ +...|...+...+++|+...++++|.|
T Consensus 405 a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqD 484 (775)
T KOG0319|consen 405 AQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQD 484 (775)
T ss_pred hhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccc
Confidence 2457777777777752 234566788899999987510 111 123465566666677888889999999
Q ss_pred CccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEe
Q 046773 356 ELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFV 432 (453)
Q Consensus 356 g~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s 432 (453)
. ++|||+++..+.+.+|.+|.-++-.+.|++++..+++||+ +|||||.+.+..|+.||+||+.. |. +|.
T Consensus 485 k-------taKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~a-Vlra~F~ 556 (775)
T KOG0319|consen 485 K-------TAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSA-VLRASFI 556 (775)
T ss_pred c-------ceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccce-eEeeeee
Confidence 9 9999999988889999999988999999999999999888 99999999999999999999999 76 677
Q ss_pred cCCCEEEEE-eCCcEEEEecC
Q 046773 433 GDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 433 ~d~~~lasg-~D~~IklWDl~ 452 (453)
-+|+.|+|+ .||-||||++.
T Consensus 557 ~~~~qliS~~adGliKlWnik 577 (775)
T KOG0319|consen 557 RNGKQLISAGADGLIKLWNIK 577 (775)
T ss_pred eCCcEEEeccCCCcEEEEecc
Confidence 899999999 99999999975
No 18
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=4e-28 Score=229.52 Aligned_cols=272 Identities=19% Similarity=0.288 Sum_probs=214.8
Q ss_pred CCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCC
Q 046773 138 DVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGD 213 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~t 213 (453)
+|.++ |+|++|++ ++|++++.|++|++||+.+++.+..+.+|.. .+..+.+. ++.|++++.|++
T Consensus 7 ~h~~~----i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~--------~i~~~~~~~~~~~l~~~~~~~~ 74 (289)
T cd00200 7 GHTGG----VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTG--------PVRDVAASADGTYLASGSSDKT 74 (289)
T ss_pred ccCCC----EEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCc--------ceeEEEECCCCCEEEEEcCCCe
Confidence 78755 88999987 7999999999999999999998888887653 35556665 458999999999
Q ss_pred EEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeee
Q 046773 214 IHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTE 292 (453)
Q Consensus 214 IkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~ 292 (453)
|++|++.... ...+..|...+. .+.|+|++++ |++++.|+.|++||+++++.. ..+..
T Consensus 75 i~i~~~~~~~~~~~~~~~~~~i~----~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~--------------~~~~~ 133 (289)
T cd00200 75 IRLWDLETGECVRTLTGHTSYVS----SVAFSPDGRI---LSSSSRDKTIKVWDVETGKCL--------------TTLRG 133 (289)
T ss_pred EEEEEcCcccceEEEeccCCcEE----EEEEcCCCCE---EEEecCCCeEEEEECCCcEEE--------------EEecc
Confidence 9999998721 344444543332 4889999774 677778999999999977632 23446
Q ss_pred eccceeEEEEcCCc-eEEEEc-CCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEc
Q 046773 293 FTEFVGRVRVTSHE-SAVACT-SSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRV 370 (453)
Q Consensus 293 h~~~v~~v~~s~~~-~~vas~-d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~ 370 (453)
|...+.++.++|++ .++++. ++.|++||+++++++.....|.......+++++++.+++++.++ .+++|+.
T Consensus 134 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~-------~i~i~d~ 206 (289)
T cd00200 134 HTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDG-------TIKLWDL 206 (289)
T ss_pred CCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCC-------cEEEEEC
Confidence 77889999999855 444444 78999999998776655555543344445566666888888888 9999999
Q ss_pred CCCeeEEEEEecCCCeeEEEEeeCCCeEEEEe-CCeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCcE
Q 046773 371 DTFEEVCRFSLRADRNVNVMGCMNQGYALMCV-EGVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNI 446 (453)
Q Consensus 371 ~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s-~~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~I 446 (453)
.+++.+..+..+...+..+.+++++..+++++ ++.|++||+.+++.+..+.+|... |. +++|+++.|+++ .|+.|
T Consensus 207 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~d~~i 285 (289)
T cd00200 207 STGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNS-VTSLAWSPDGKRLASGSADGTI 285 (289)
T ss_pred CCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCc-EEEEEECCCCCEEEEecCCCeE
Confidence 99888888877777788999998877777776 499999999999999999998877 77 567888999998 99999
Q ss_pred EEEe
Q 046773 447 HLWD 450 (453)
Q Consensus 447 klWD 450 (453)
+|||
T Consensus 286 ~iw~ 289 (289)
T cd00200 286 RIWD 289 (289)
T ss_pred EecC
Confidence 9997
No 19
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=2.5e-29 Score=262.12 Aligned_cols=275 Identities=13% Similarity=0.135 Sum_probs=222.4
Q ss_pred EEEEEecC---CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEE--EcCCeEEEEeCCCCEEEEEeec
Q 046773 147 CRCLTLSD---LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGII--ITDSQLIFATLDGDIHVAVIDD 221 (453)
Q Consensus 147 v~~lafs~---~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~--f~g~~LasgS~D~tIkvWd~~~ 221 (453)
|..+.|=+ ++||.++.-..+|++++.|-.|- .+.||.. .|-++. .+|..|+|||.|+++++|-++.
T Consensus 326 I~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e--------~vlSL~~~~~g~llat~sKD~svilWr~~~ 396 (775)
T KOG0319|consen 326 ILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTE--------AVLSLDVWSSGDLLATGSKDKSVILWRLNN 396 (775)
T ss_pred heeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchh--------heeeeeecccCcEEEEecCCceEEEEEecC
Confidence 67777754 79999999999999999999997 7788764 566665 4577999999999999998843
Q ss_pred C-C----cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc-EEecccccCCcceeeeeeeeeecc
Q 046773 222 V-A----NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE-VFVGGDLTDHNTVMGWRMLTEFTE 295 (453)
Q Consensus 222 ~-g----~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~-~~~g~~l~~~~~v~~w~~l~~h~~ 295 (453)
. + .....+|+..+- .|+++..+-- .|+|+|.|.|+|+|++...+ .-. +.....-.+...|..
T Consensus 397 ~~~~~~~~a~~~gH~~svg----ava~~~~~as--ffvsvS~D~tlK~W~l~~s~~~~~------~~~~~~~~t~~aHdK 464 (775)
T KOG0319|consen 397 NCSKSLCVAQANGHTNSVG----AVAGSKLGAS--FFVSVSQDCTLKLWDLPKSKETAF------PIVLTCRYTERAHDK 464 (775)
T ss_pred Ccchhhhhhhhcccccccc----eeeecccCcc--EEEEecCCceEEEecCCCcccccc------cceehhhHHHHhhcc
Confidence 1 1 233456766543 3677554433 48999999999999987622 100 010000023467888
Q ss_pred ceeEEEEcCCceEEE--EcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCC
Q 046773 296 FVGRVRVTSHESAVA--CTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTF 373 (453)
Q Consensus 296 ~v~~v~~s~~~~~va--s~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg 373 (453)
-||+|+++|+..++| |-|.|.|||+++..+.+.++.||..++...+|++....++++|+|. |+|||.++++
T Consensus 465 dIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~-------TvKIW~is~f 537 (775)
T KOG0319|consen 465 DINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDK-------TVKIWSISTF 537 (775)
T ss_pred cccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCc-------eEEEEEeccc
Confidence 899999998775444 5689999999997777777899999887777777777999999999 9999999999
Q ss_pred eeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEEEEe--cCCCEEEEE-eCCcEEEE
Q 046773 374 EEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVIAFV--GDDRHVAAS-CGTNIHLW 449 (453)
Q Consensus 374 ~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~a~s--~d~~~lasg-~D~~IklW 449 (453)
.|+.+|.+|...|..+.|-.++.++++|++ |-||||+++|++|+.+|.+|.+. ||+|+ |++..+++| .|+.|-+|
T Consensus 538 SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~Dr-vWaL~~~~~~~~~~tgg~Dg~i~~w 616 (775)
T KOG0319|consen 538 SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDR-VWALSVSPLLDMFVTGGGDGRIIFW 616 (775)
T ss_pred eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccce-eEEEeecCccceeEecCCCeEEEEe
Confidence 999999999999999999999999999877 99999999999999999999999 99775 777889999 99999999
Q ss_pred e
Q 046773 450 D 450 (453)
Q Consensus 450 D 450 (453)
.
T Consensus 617 k 617 (775)
T KOG0319|consen 617 K 617 (775)
T ss_pred e
Confidence 4
No 20
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.97 E-value=5.4e-29 Score=235.51 Aligned_cols=239 Identities=15% Similarity=0.164 Sum_probs=188.1
Q ss_pred eEEEEecCCCCCccccccceEEEEEE--c-CCeEEEEeCCCCEEEEEeec----CC--cceEEeeecceecCceEEEEeC
Q 046773 175 LHVRTFRPQHSDRLGQFSRAVSGIII--T-DSQLIFATLDGDIHVAVIDD----VA--NETRTAHFGSVMDDGVLIDFTG 245 (453)
Q Consensus 175 ~~~~tl~gh~~~~~~~~s~~V~~i~f--~-g~~LasgS~D~tIkvWd~~~----~g--~~~~~~~~~~v~~~~~~v~Fs~ 245 (453)
...-||+||.. .|.+++. . .+.|+++|.|+++.+|++.. .| ...+++|...|. -++.++
T Consensus 6 ~l~~tl~gh~d--------~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~----dv~~s~ 73 (315)
T KOG0279|consen 6 VLRGTLEGHTD--------WVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVS----DVVLSS 73 (315)
T ss_pred eeeeeecCCCc--------eEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEec----ceEEcc
Confidence 34568888765 5666654 3 56899999999999999865 34 455677766543 278899
Q ss_pred CCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCC
Q 046773 246 CSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRN 323 (453)
Q Consensus 246 dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t 323 (453)
||++ ..|+|.|+++|+||+++|+.. +.+.+|+.-|.+|+|+++. ++++|-|.||+|||.-.
T Consensus 74 dg~~---alS~swD~~lrlWDl~~g~~t--------------~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g 136 (315)
T KOG0279|consen 74 DGNF---ALSASWDGTLRLWDLATGEST--------------RRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG 136 (315)
T ss_pred CCce---EEeccccceEEEEEecCCcEE--------------EEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc
Confidence 9997 679999999999999999842 3477889999999999876 34556689999999985
Q ss_pred CceEEEEeeccCCeEEEEEEecCC----EEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEE
Q 046773 324 QGMVLGERGYGRGLYVTSVDVNAE----AYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYAL 399 (453)
Q Consensus 324 ~~~~~~~~g~~~~~~v~~~~~~g~----~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~ll 399 (453)
+|..+...+.+...|.|+.|+++ .++++|.|+ ++||||+++-+....+.+|..-+..+.++|||...+
T Consensus 137 -~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~Dk-------tvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslca 208 (315)
T KOG0279|consen 137 -VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDK-------TVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCA 208 (315)
T ss_pred -cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCc-------eEEEEccCCcchhhccccccccEEEEEECCCCCEEe
Confidence 56666533332456666655554 688889998 999999999888888888888899999999988777
Q ss_pred EEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEEeCCcEEEEecC
Q 046773 400 MCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAASCGTNIHLWDFG 452 (453)
Q Consensus 400 s~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg~D~~IklWDl~ 452 (453)
+++- +.+.|||+..++++++|. |... |+ +|+|..-+|+.+.+..|||||+.
T Consensus 209 sGgkdg~~~LwdL~~~k~lysl~-a~~~-v~sl~fspnrywL~~at~~sIkIwdl~ 262 (315)
T KOG0279|consen 209 SGGKDGEAMLWDLNEGKNLYSLE-AFDI-VNSLCFSPNRYWLCAATATSIKIWDLE 262 (315)
T ss_pred cCCCCceEEEEEccCCceeEecc-CCCe-EeeEEecCCceeEeeccCCceEEEecc
Confidence 6655 999999999999999995 5566 77 67788777877778889999985
No 21
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=2.9e-28 Score=232.48 Aligned_cols=272 Identities=14% Similarity=0.116 Sum_probs=208.7
Q ss_pred CCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCC-eEEEEecCCCCCccccccceEEEEEE--cCCeEEEEeCCC
Q 046773 138 DVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTR-LHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATLDG 212 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg-~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~D~ 212 (453)
||+ ..|++.+|+| ..+|||++|..|-||++..- +-..+++||.+ +|..+.+ |++.|+|+|.|+
T Consensus 45 gh~----geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsg--------AVM~l~~~~d~s~i~S~gtDk 112 (338)
T KOG0265|consen 45 GHK----GEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSG--------AVMELHGMRDGSHILSCGTDK 112 (338)
T ss_pred CCc----ceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccc--------eeEeeeeccCCCEEEEecCCc
Confidence 786 2388999986 69999999999999997433 23567888754 7888877 578999999999
Q ss_pred CEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeee
Q 046773 213 DIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRML 290 (453)
Q Consensus 213 tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l 290 (453)
|+++||+++ | +.-+++|+.-+. ++. |.-+-..++.|||.|+|+||||+++++... ++
T Consensus 113 ~v~~wD~~t-G~~~rk~k~h~~~vN----s~~--p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~--------------t~ 171 (338)
T KOG0265|consen 113 TVRGWDAET-GKRIRKHKGHTSFVN----SLD--PSRRGPQLVCSGSDDGTLKLWDIRKKEAIK--------------TF 171 (338)
T ss_pred eEEEEeccc-ceeeehhccccceee----ecC--ccccCCeEEEecCCCceEEEEeecccchhh--------------cc
Confidence 999999999 7 344455655432 233 332222368899999999999999877321 11
Q ss_pred eeeccceeEEEEc--CCceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEE
Q 046773 291 TEFTEFVGRVRVT--SHESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVR 368 (453)
Q Consensus 291 ~~h~~~v~~v~~s--~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw 368 (453)
...-.+.+|.|. .+..+++.-|+.||+||++.+.+++++.||...+.-.+++++|..+.+-+.|. ++++|
T Consensus 172 -~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~-------tvrvw 243 (338)
T KOG0265|consen 172 -ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDN-------TVRVW 243 (338)
T ss_pred -ccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccc-------eEEEE
Confidence 112345677775 45567777899999999999999998899887666566778888998888888 99999
Q ss_pred EcCC----CeeEEEEEecCCC----eeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCE
Q 046773 369 RVDT----FEEVCRFSLRADR----NVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRH 437 (453)
Q Consensus 369 ~~~t----g~~v~~l~~~~~~----v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~ 437 (453)
|..- ..|+..+.++... ......+|+++++-+++. +.+.+||..+-+++|.|+||.+. |+ .|.|...+
T Consensus 244 d~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gs-vn~~~Fhp~e~i 322 (338)
T KOG0265|consen 244 DVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGS-VNEVDFHPTEPI 322 (338)
T ss_pred EecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCccee-EEEeeecCCCcE
Confidence 9763 2457777665422 334566788888777766 99999999999999999999999 88 78899999
Q ss_pred EEEE-eCCcEEEEec
Q 046773 438 VAAS-CGTNIHLWDF 451 (453)
Q Consensus 438 lasg-~D~~IklWDl 451 (453)
|.|+ .|++|.|=++
T Consensus 323 ils~~sdk~i~lgei 337 (338)
T KOG0265|consen 323 ILSCSSDKTIYLGEI 337 (338)
T ss_pred EEEeccCceeEeecc
Confidence 9998 9999987544
No 22
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=3.2e-27 Score=264.44 Aligned_cols=265 Identities=14% Similarity=0.188 Sum_probs=196.9
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCe--------EEEEecCCCCCccccccceEEEEEEc---CCeEEEEeCCCC
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRL--------HVRTFRPQHSDRLGQFSRAVSGIIIT---DSQLIFATLDGD 213 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~--------~~~tl~gh~~~~~~~~s~~V~~i~f~---g~~LasgS~D~t 213 (453)
|.+++|++ ++||||+.|++|||||+.+.. ....+.++ ..|.+++++ +..|++++.|++
T Consensus 486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~---------~~v~~l~~~~~~~~~las~~~Dg~ 556 (793)
T PLN00181 486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASR---------SKLSGICWNSYIKSQVASSNFEGV 556 (793)
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEeccc---------CceeeEEeccCCCCEEEEEeCCCe
Confidence 88999985 699999999999999986421 12233321 146667764 578999999999
Q ss_pred EEEEEeecCC-cceEEeeecceecCceEEEEeC-CCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeee
Q 046773 214 IHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTG-CSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLT 291 (453)
Q Consensus 214 IkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~-dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~ 291 (453)
|+|||+.+.. +..+..|.+.|. .|+|+| ++.+ |+|||.|++|+|||+++++.+ .++.
T Consensus 557 v~lWd~~~~~~~~~~~~H~~~V~----~l~~~p~~~~~---L~Sgs~Dg~v~iWd~~~~~~~--------------~~~~ 615 (793)
T PLN00181 557 VQVWDVARSQLVTEMKEHEKRVW----SIDYSSADPTL---LASGSDDGSVKLWSINQGVSI--------------GTIK 615 (793)
T ss_pred EEEEECCCCeEEEEecCCCCCEE----EEEEcCCCCCE---EEEEcCCCEEEEEECCCCcEE--------------EEEe
Confidence 9999998722 445556766654 489997 6664 889999999999999988743 1233
Q ss_pred eeccceeEEEEcC-C--ceEEEEcCCcEEEEECCCCce-EEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEE
Q 046773 292 EFTEFVGRVRVTS-H--ESAVACTSSRVITFDLRNQGM-VLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIV 367 (453)
Q Consensus 292 ~h~~~v~~v~~s~-~--~~~vas~d~tIrlWDl~t~~~-~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~I 367 (453)
.+ ..+.++.|.+ + .+++++.|++|++||+++++. +....+|...+....|. +++.+++++.|+ +++|
T Consensus 616 ~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~-------~iki 686 (793)
T PLN00181 616 TK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDN-------TLKL 686 (793)
T ss_pred cC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCC-------EEEE
Confidence 33 5688888853 3 356667789999999998653 33445665544434443 577899999999 9999
Q ss_pred EEcCCC------eeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEe-------------cccCCce
Q 046773 368 RRVDTF------EEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSF-------------RERIGEE 427 (453)
Q Consensus 368 w~~~tg------~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL-------------~gh~~~~ 427 (453)
||+..+ .++.++..|...+..+.+++++.++++++. ++|+|||..+...+.++ ..|...
T Consensus 687 Wd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~- 765 (793)
T PLN00181 687 WDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQF- 765 (793)
T ss_pred EeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcE-
Confidence 998743 567888888887888889999999888887 99999998776443222 122333
Q ss_pred EE--EEecCCCEEEEE-eCCcEEEEec
Q 046773 428 VI--AFVGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 428 V~--a~s~d~~~lasg-~D~~IklWDl 451 (453)
|. +++|++..|++| .||+|+|||+
T Consensus 766 V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 766 ISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 66 567999999999 9999999996
No 23
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1.3e-27 Score=251.63 Aligned_cols=230 Identities=16% Similarity=0.240 Sum_probs=191.9
Q ss_pred eEEEEEE--cCCeEEEEeCCCCEEEEEeecCC---cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCC
Q 046773 194 AVSGIII--TDSQLIFATLDGDIHVAVIDDVA---NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQ 268 (453)
Q Consensus 194 ~V~~i~f--~g~~LasgS~D~tIkvWd~~~~g---~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~ 268 (453)
.|.++.| +|+.|++++.|+++++|+....- .+.+.+|...|. .++|+|||++ |++|+.|++|||||++
T Consensus 161 sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~----~~~fs~d~~~---l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 161 SVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVS----DVAFSPDGSY---LLSGSDDKTLRIWDLK 233 (456)
T ss_pred ceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhcccccccccee----eeEECCCCcE---EEEecCCceEEEeecc
Confidence 5666655 57889999999999999984411 233445655543 4899999996 8899999999999994
Q ss_pred CC-cEEecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEec
Q 046773 269 AE-EVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVN 345 (453)
Q Consensus 269 tg-~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~ 345 (453)
.. .++ +++++|+.+|+++.|+|++ ++++|.|++|||||+++++|...+.+|...+...+|.++
T Consensus 234 ~~~~~~--------------~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d 299 (456)
T KOG0266|consen 234 DDGRNL--------------KTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPD 299 (456)
T ss_pred CCCeEE--------------EEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCC
Confidence 43 443 5688999999999999877 345567899999999999998888899888888889999
Q ss_pred CCEEEEEeCCCccccCcceEEEEEcCCCe--eEEEEEecCCC--eeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEe
Q 046773 346 AEAYIVVENRELENQNRRLAIVRRVDTFE--EVCRFSLRADR--NVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSF 420 (453)
Q Consensus 346 g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~--~v~~l~~~~~~--v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL 420 (453)
+..++++|.|+ .++|||..+++ ++..+..+... +..+.|++++.+++++.. +++++||+..++++.++
T Consensus 300 ~~~l~s~s~d~-------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~ 372 (456)
T KOG0266|consen 300 GNLLVSASYDG-------TIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTY 372 (456)
T ss_pred CCEEEEcCCCc-------cEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeee
Confidence 99999999999 99999999998 66777666554 788999999999999888 89999999999999999
Q ss_pred cccCCceEE-----EEecCCCEEEEE-eCCcEEEEecC
Q 046773 421 RERIGEEVI-----AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 421 ~gh~~~~V~-----a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
.+|... +. .+.+++++|++| .|++|++||+.
T Consensus 373 ~~~~~~-~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~ 409 (456)
T KOG0266|consen 373 TGHSNL-VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSS 409 (456)
T ss_pred cccCCc-ceeEecccccCCCCeEEEEeCCceEEEEeCC
Confidence 999886 33 225799999999 99999999975
No 24
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.3e-28 Score=239.79 Aligned_cols=230 Identities=16% Similarity=0.180 Sum_probs=178.1
Q ss_pred eEEEEEEcCC--eEEEEeCCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCC
Q 046773 194 AVSGIIITDS--QLIFATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQA 269 (453)
Q Consensus 194 ~V~~i~f~g~--~LasgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~t 269 (453)
+|..+-|.+. .++++|.|.|||+||..+ | ...+++|+..+. .|+|+..|++ |+++|.|-++++||.++
T Consensus 110 ~vt~v~~hp~~~~v~~as~d~tikv~D~~t-g~~e~~LrGHt~sv~----di~~~a~Gk~---l~tcSsDl~~~LWd~~~ 181 (406)
T KOG0295|consen 110 SVTRVIFHPSEALVVSASEDATIKVFDTET-GELERSLRGHTDSVF----DISFDASGKY---LATCSSDLSAKLWDFDT 181 (406)
T ss_pred ceeeeeeccCceEEEEecCCceEEEEEccc-hhhhhhhhcccccee----EEEEecCccE---EEecCCccchhheeHHH
Confidence 5666666654 577888999999999988 5 678899988765 4899999986 89999999999999987
Q ss_pred Cc-EEecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecC
Q 046773 270 EE-VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNA 346 (453)
Q Consensus 270 g~-~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g 346 (453)
-. +. +.+.+|.--|.+|.|-|.+ +++++-|.+||.||+.|+-|+.++.+|...+.+..+.-||
T Consensus 182 ~~~c~--------------ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DG 247 (406)
T KOG0295|consen 182 FFRCI--------------KSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDG 247 (406)
T ss_pred HHHHH--------------HHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCe
Confidence 32 22 2345666778999987654 4555668999999999999999998887644444444444
Q ss_pred CEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEee--------------CCC-eEEEEeC-CeEEEEE
Q 046773 347 EAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCM--------------NQG-YALMCVE-GVIRVWE 410 (453)
Q Consensus 347 ~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~--------------~~~-~lls~s~-~tIrlWD 410 (453)
..++++|.|. ++++|...+.+|...++.|..-+..+.+.| +++ ++.+++- +|||+||
T Consensus 248 ti~As~s~dq-------tl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wd 320 (406)
T KOG0295|consen 248 TIIASCSNDQ-------TLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWD 320 (406)
T ss_pred eEEEecCCCc-------eEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEe
Confidence 4455555555 999999999988777777765555444332 223 3444443 9999999
Q ss_pred CCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEecCC
Q 046773 411 VEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFGA 453 (453)
Q Consensus 411 ~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl~~ 453 (453)
+.||.||.||.||.++ |. +|+|-|++|+|. .|+++++||+.+
T Consensus 321 v~tg~cL~tL~ghdnw-Vr~~af~p~Gkyi~ScaDDktlrvwdl~~ 365 (406)
T KOG0295|consen 321 VSTGMCLFTLVGHDNW-VRGVAFSPGGKYILSCADDKTLRVWDLKN 365 (406)
T ss_pred ccCCeEEEEEecccce-eeeeEEcCCCeEEEEEecCCcEEEEEecc
Confidence 9999999999999999 98 788999999998 999999999864
No 25
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.7e-27 Score=219.51 Aligned_cols=269 Identities=14% Similarity=0.190 Sum_probs=211.1
Q ss_pred EEEEEec--CCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCC-
Q 046773 147 CRCLTLS--DLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVA- 223 (453)
Q Consensus 147 v~~lafs--~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g- 223 (453)
|.++.|+ ++|..|++.|+|||||++..|.|++|+.||..+... .++.+|+.++++|+.|+-|.+||+++ |
T Consensus 20 V~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD------~~~s~Dnskf~s~GgDk~v~vwDV~T-Gk 92 (307)
T KOG0316|consen 20 VRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLD------AALSSDNSKFASCGGDKAVQVWDVNT-GK 92 (307)
T ss_pred eEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeee------ccccccccccccCCCCceEEEEEccc-Ce
Confidence 7889997 589999999999999999999999999997654222 23457889999999999999999999 7
Q ss_pred -cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEE
Q 046773 224 -NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRV 302 (453)
Q Consensus 224 -~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~ 302 (453)
++.+++|.+.|. .|.|+.++.. ++|||.|.++|+||.++...- | .+.|....+-|.+|.+
T Consensus 93 v~Rr~rgH~aqVN----tV~fNeesSV---v~SgsfD~s~r~wDCRS~s~e-------P-----iQildea~D~V~Si~v 153 (307)
T KOG0316|consen 93 VDRRFRGHLAQVN----TVRFNEESSV---VASGSFDSSVRLWDCRSRSFE-------P-----IQILDEAKDGVSSIDV 153 (307)
T ss_pred eeeecccccceee----EEEecCcceE---EEeccccceeEEEEcccCCCC-------c-----cchhhhhcCceeEEEe
Confidence 677788988875 5899988764 899999999999999886510 1 1345566788999999
Q ss_pred cCCceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEec
Q 046773 303 TSHESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLR 382 (453)
Q Consensus 303 s~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~ 382 (453)
+...++.+|.|+++|.+|++.|+..--..| +.+...+|+++++..+.++.++ ++++-|-+||+.+....+|
T Consensus 154 ~~heIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~s-------tlrLlDk~tGklL~sYkGh 224 (307)
T KOG0316|consen 154 AEHEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDS-------TLRLLDKETGKLLKSYKGH 224 (307)
T ss_pred cccEEEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccc-------eeeecccchhHHHHHhccc
Confidence 998888889999999999998754222233 4566677888999999999999 9999999999988887777
Q ss_pred CCCeeEEEEe--eCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEEEE--ecCCCEEEEEeCCcEEEEe
Q 046773 383 ADRNVNVMGC--MNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVIAF--VGDDRHVAASCGTNIHLWD 450 (453)
Q Consensus 383 ~~~v~~~~~~--~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~a~--s~d~~~lasg~D~~IklWD 450 (453)
.+.-..+--| .....+++++. |.|.+||+..++.+..|+-|....|..+ .|.-..+.++.++.+..|-
T Consensus 225 kn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~~~~ 297 (307)
T KOG0316|consen 225 KNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHGDLFWY 297 (307)
T ss_pred ccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCceecee
Confidence 6543333322 23456667777 9999999999999999987765535544 4655556666667777774
No 26
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.9e-27 Score=251.29 Aligned_cols=270 Identities=16% Similarity=0.207 Sum_probs=218.8
Q ss_pred EEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcC--CeEEEEeCCCCEEEEEeec
Q 046773 146 TCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITD--SQLIFATLDGDIHVAVIDD 221 (453)
Q Consensus 146 ~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g--~~LasgS~D~tIkvWd~~~ 221 (453)
.|..++|-| ..|.++-..+.|++||-.-|.|+..|..|.+ .|++|+|.+ ...+||+.|.+||||+..+
T Consensus 11 RvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdG--------pVRgv~FH~~qplFVSGGDDykIkVWnYk~ 82 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDG--------PVRGVDFHPTQPLFVSGGDDYKIKVWNYKT 82 (1202)
T ss_pred cccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCC--------ccceeeecCCCCeEEecCCccEEEEEeccc
Confidence 367788887 4899999999999999999999999998765 689999975 4689999999999999987
Q ss_pred C-CcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEE
Q 046773 222 V-ANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRV 300 (453)
Q Consensus 222 ~-g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v 300 (453)
. .+.++.+|...|. .+.|++.-.| +.|+|.|.||||||..++.++ -.|+||.-.|.|.
T Consensus 83 rrclftL~GHlDYVR----t~~FHheyPW---IlSASDDQTIrIWNwqsr~~i--------------avltGHnHYVMcA 141 (1202)
T KOG0292|consen 83 RRCLFTLLGHLDYVR----TVFFHHEYPW---ILSASDDQTIRIWNWQSRKCI--------------AVLTGHNHYVMCA 141 (1202)
T ss_pred ceehhhhccccceeE----EeeccCCCce---EEEccCCCeEEEEeccCCceE--------------EEEecCceEEEee
Confidence 3 2678888987764 4899999887 679999999999999999864 3578899999999
Q ss_pred EEcCCc--eEEEEcCCcEEEEECCC--------C-------------------ceEEE--EeeccCCeEEEEEEecCCEE
Q 046773 301 RVTSHE--SAVACTSSRVITFDLRN--------Q-------------------GMVLG--ERGYGRGLYVTSVDVNAEAY 349 (453)
Q Consensus 301 ~~s~~~--~~vas~d~tIrlWDl~t--------~-------------------~~~~~--~~g~~~~~~v~~~~~~g~~l 349 (453)
+|+|.+ +++||-|.|||+||+.- + .++.. +.||..++.-.+|.|.--.+
T Consensus 142 qFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpli 221 (1202)
T KOG0292|consen 142 QFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLI 221 (1202)
T ss_pred ccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceE
Confidence 999844 45567789999999852 1 11111 25666666556676666788
Q ss_pred EEEeCCCccccCcceEEEEEcCCCe--eEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCc
Q 046773 350 IVVENRELENQNRRLAIVRRVDTFE--EVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGE 426 (453)
Q Consensus 350 ~s~s~dg~~~~~~~~i~Iw~~~tg~--~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~ 426 (453)
+||+.|. .+|+|.++..+ ++.++.+|-+.|.++.|+|....+++.+. ++|||||++..+++++++--.+.
T Consensus 222 VSG~DDR-------qVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendR 294 (1202)
T KOG0292|consen 222 VSGADDR-------QVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDR 294 (1202)
T ss_pred EecCCcc-------eeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCe
Confidence 9998888 99999987543 56677889888999999998888888887 99999999999999999644444
Q ss_pred eEE--EEecCCCEEEEEeCCcEEEEecC
Q 046773 427 EVI--AFVGDDRHVAASCGTNIHLWDFG 452 (453)
Q Consensus 427 ~V~--a~s~d~~~lasg~D~~IklWDl~ 452 (453)
.| +..|..+..|.|.|+.+.++.+.
T Consensus 295 -FW~laahP~lNLfAAgHDsGm~VFkle 321 (1202)
T KOG0292|consen 295 -FWILAAHPELNLFAAGHDSGMIVFKLE 321 (1202)
T ss_pred -EEEEEecCCcceeeeecCCceEEEEEc
Confidence 55 66788999998877777777653
No 27
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.96 E-value=1.5e-26 Score=220.17 Aligned_cols=245 Identities=12% Similarity=0.094 Sum_probs=199.9
Q ss_pred EEEecCCCCCccccccceEEEEEE--cCCeEEEEeCCCCEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEE
Q 046773 177 VRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATLDGDIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGL 253 (453)
Q Consensus 177 ~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~D~tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~L 253 (453)
.|+|+||.. .|.++.+ |.+.|+|+|.|+.+.|||.-+.. .+.+......|+ ..+|+|.|++ +
T Consensus 48 rr~LkGH~~--------Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVM----tCA~sPSg~~---V 112 (343)
T KOG0286|consen 48 RRTLKGHLN--------KIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVM----TCAYSPSGNF---V 112 (343)
T ss_pred EEEeccccc--------ceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEE----EEEECCCCCe---E
Confidence 489999865 5666765 56789999999999999976622 344444555555 4799999997 7
Q ss_pred EEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc-eEEEEcCCcEEEEECCCCceEEEEee
Q 046773 254 YAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE-SAVACTSSRVITFDLRNQGMVLGERG 332 (453)
Q Consensus 254 aSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~-~~vas~d~tIrlWDl~t~~~~~~~~g 332 (453)
|.|+-|+..-|+++.+..-- +.+.-=+.|.+|++++.+.+|-++. ++.+|+|.|+-|||+++++.+..+.|
T Consensus 113 AcGGLdN~Csiy~ls~~d~~--------g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~G 184 (343)
T KOG0286|consen 113 ACGGLDNKCSIYPLSTRDAE--------GNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHG 184 (343)
T ss_pred EecCcCceeEEEeccccccc--------ccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecC
Confidence 89999999999999876300 0011114688999999999998766 45667889999999999987776788
Q ss_pred ccCCeEEEEEEe-cCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEE
Q 046773 333 YGRGLYVTSVDV-NAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWE 410 (453)
Q Consensus 333 ~~~~~~v~~~~~-~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD 410 (453)
|...+...+++| +++.+++++.|. +.+|||+..+.|+++|.+|+..|.++.|+|+|..++++++ +|.|++|
T Consensus 185 H~gDV~slsl~p~~~ntFvSg~cD~-------~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyD 257 (343)
T KOG0286|consen 185 HTGDVMSLSLSPSDGNTFVSGGCDK-------SAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYD 257 (343)
T ss_pred CcccEEEEecCCCCCCeEEeccccc-------ceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEe
Confidence 887777677778 789999999999 9999999999999999999999999999999999999999 9999999
Q ss_pred CCCCeEEEEecccC-CceEE--EEecCCCEEEEE-eCCcEEEEec
Q 046773 411 VEGGEYMYSFRERI-GEEVI--AFVGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 411 ~~tG~~l~tL~gh~-~~~V~--a~s~d~~~lasg-~D~~IklWDl 451 (453)
+...+.+..+.... ...|+ +||..||.|-+| .|.++.+||.
T Consensus 258 lRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDt 302 (343)
T KOG0286|consen 258 LRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDT 302 (343)
T ss_pred ecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeec
Confidence 99999988886321 11255 788999999999 9999999994
No 28
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.95 E-value=2.3e-26 Score=230.13 Aligned_cols=281 Identities=14% Similarity=0.154 Sum_probs=209.2
Q ss_pred CCCCCCCeEEEEEEecC--C-EEEEEeCCCcEEEEECCC--CeEEE--EecCCCC---CccccccceEEEEEEc--CCeE
Q 046773 138 DVDNPDGLTCRCLTLSD--L-YLACGFADGAVRLFDLTT--RLHVR--TFRPQHS---DRLGQFSRAVSGIIIT--DSQL 205 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~-~LaSGS~D~TIrlWD~~t--g~~~~--tl~gh~~---~~~~~~s~~V~~i~f~--g~~L 205 (453)
+|+.+ |.|.+++| + .||+|+.|-+.|+|++.. ..|.. .|+ |.. ..-.+-...|.+++.+ |..|
T Consensus 176 ~~~~~----V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lr-h~~~~~~~s~~~nkdVT~L~Wn~~G~~L 250 (524)
T KOG0273|consen 176 RHESE----VFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLR-HCIREGGKSVPSNKDVTSLDWNNDGTLL 250 (524)
T ss_pred cCCCc----eEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhh-hhhhhhcccCCccCCcceEEecCCCCeE
Confidence 47644 77888887 3 899999999999999864 33322 222 111 0001223578899987 8899
Q ss_pred EEEeCCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCccee
Q 046773 206 IFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVM 285 (453)
Q Consensus 206 asgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~ 285 (453)
|+|+.|+-+++|+.+..-+.++.-|.+.|. .|-.+.+|.+ |+||+.|+|+-|||..+|+...
T Consensus 251 atG~~~G~~riw~~~G~l~~tl~~HkgPI~----slKWnk~G~y---ilS~~vD~ttilwd~~~g~~~q----------- 312 (524)
T KOG0273|consen 251 ATGSEDGEARIWNKDGNLISTLGQHKGPIF----SLKWNKKGTY---ILSGGVDGTTILWDAHTGTVKQ----------- 312 (524)
T ss_pred EEeecCcEEEEEecCchhhhhhhccCCceE----EEEEcCCCCE---EEeccCCccEEEEeccCceEEE-----------
Confidence 999999999999988622677777888876 5888999987 7899999999999999998321
Q ss_pred eeeeeeeeccceeEEE-EcCCceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcce
Q 046773 286 GWRMLTEFTEFVGRVR-VTSHESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRL 364 (453)
Q Consensus 286 ~w~~l~~h~~~v~~v~-~s~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~ 364 (453)
...-|..+--.|- .+.+..++.+.|+.|+|.-+.-.+-..++.||...+.+..++|.+..|+++|.|+ |
T Consensus 313 ---~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~-------T 382 (524)
T KOG0273|consen 313 ---QFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDG-------T 382 (524)
T ss_pred ---eeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCC-------e
Confidence 1112222211122 2344556666789999998876555566677665555555666688999999999 9
Q ss_pred EEEEEcCCCeeEEEEEecCCCeeEEEEeeCC---------CeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEe
Q 046773 365 AIVRRVDTFEEVCRFSLRADRNVNVMGCMNQ---------GYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFV 432 (453)
Q Consensus 365 i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~---------~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s 432 (453)
+|||......++..|..|...+.++..+|.+ ..+++++. +|||+||++.|.|+++|..|+.. |. +|+
T Consensus 383 lkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~p-VysvafS 461 (524)
T KOG0273|consen 383 LKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEP-VYSVAFS 461 (524)
T ss_pred eEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCc-eEEEEec
Confidence 9999988777777777777666666666532 34555555 99999999999999999999999 88 788
Q ss_pred cCCCEEEEE-eCCcEEEEecC
Q 046773 433 GDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 433 ~d~~~lasg-~D~~IklWDl~ 452 (453)
|++++||+| -|+.|.||++.
T Consensus 462 ~~g~ylAsGs~dg~V~iws~~ 482 (524)
T KOG0273|consen 462 PNGRYLASGSLDGCVHIWSTK 482 (524)
T ss_pred CCCcEEEecCCCCeeEecccc
Confidence 999999999 99999999875
No 29
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=8.1e-28 Score=241.21 Aligned_cols=275 Identities=13% Similarity=0.136 Sum_probs=208.6
Q ss_pred CCCCCCCCeEEEEEEecC---CEEEEEeCCCcEEEEECCC-CeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeC
Q 046773 137 SDVDNPDGLTCRCLTLSD---LYLACGFADGAVRLFDLTT-RLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATL 210 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~---~~LaSGS~D~TIrlWD~~t-g~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~ 210 (453)
.||+ ++ |.+++|-+ .+|+|++.|++|+|||+.. ++|+|||.||.. .|++++|+ |..+.|+|.
T Consensus 211 ~gH~--kg--vsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k--------~Vrd~~~s~~g~~fLS~sf 278 (503)
T KOG0282|consen 211 SGHT--KG--VSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRK--------PVRDASFNNCGTSFLSASF 278 (503)
T ss_pred cCCc--cc--cchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchh--------hhhhhhccccCCeeeeeec
Confidence 5999 55 89999977 5899999999999999987 999999999765 67888886 788999999
Q ss_pred CCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeee
Q 046773 211 DGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRML 290 (453)
Q Consensus 211 D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l 290 (453)
|++||+||+++ |....+.|++.+.. .|-|.||++ +.+.+|..|+.|+.||+++++.+ +..
T Consensus 279 D~~lKlwDtET-G~~~~~f~~~~~~~---cvkf~pd~~--n~fl~G~sd~ki~~wDiRs~kvv--------------qeY 338 (503)
T KOG0282|consen 279 DRFLKLWDTET-GQVLSRFHLDKVPT---CVKFHPDNQ--NIFLVGGSDKKIRQWDIRSGKVV--------------QEY 338 (503)
T ss_pred ceeeeeecccc-ceEEEEEecCCCce---eeecCCCCC--cEEEEecCCCcEEEEeccchHHH--------------HHH
Confidence 99999999999 86677777776643 489999994 35778999999999999999842 122
Q ss_pred eeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEE-eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEE
Q 046773 291 TEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGE-RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIV 367 (453)
Q Consensus 291 ~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~-~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~I 367 (453)
..|-+.|+.+.|-+++ .+++|+|.++|+|+.+.+-.+... .-+.|......+.|.+..++.-|.|. -|-|
T Consensus 339 d~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN-------~i~i 411 (503)
T KOG0282|consen 339 DRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDN-------YIAI 411 (503)
T ss_pred HhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCc-------eEEE
Confidence 3456788999986544 456667789999999986433222 22234445566778888887777777 6666
Q ss_pred EEcCCCe---eEEEEEecC--CCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE-EEecCC-CEEE
Q 046773 368 RRVDTFE---EVCRFSLRA--DRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI-AFVGDD-RHVA 439 (453)
Q Consensus 368 w~~~tg~---~v~~l~~~~--~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~-a~s~d~-~~la 439 (453)
..+...- .-..|.+|- .--..+.|+||+++|+++.+ |.+-+||..|-+.+.+|..|.+..|. .+.|-. ..||
T Consensus 412 fs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skva 491 (503)
T KOG0282|consen 412 FSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVA 491 (503)
T ss_pred EecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeE
Confidence 6543211 011233332 11345788999999999887 99999999999999999999877333 556744 4677
Q ss_pred EE-eCCcEEEEe
Q 046773 440 AS-CGTNIHLWD 450 (453)
Q Consensus 440 sg-~D~~IklWD 450 (453)
++ .||.||+||
T Consensus 492 t~~w~G~Ikiwd 503 (503)
T KOG0282|consen 492 TCGWDGLIKIWD 503 (503)
T ss_pred ecccCceeEecC
Confidence 77 999999997
No 30
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.6e-25 Score=211.36 Aligned_cols=273 Identities=15% Similarity=0.151 Sum_probs=200.0
Q ss_pred CCCCCCCCeEEEEEEecCC---EEEEEeCCCcEEEEECCC---CeEEEEecCCCCCccccccceEEEEEE--cCCeEEEE
Q 046773 137 SDVDNPDGLTCRCLTLSDL---YLACGFADGAVRLFDLTT---RLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFA 208 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~~---~LaSGS~D~TIrlWD~~t---g~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~Lasg 208 (453)
.||+ +- +..+++++- .|||+|.|++||||+... -.|..+|...| .++|+.+++ .|+.||+|
T Consensus 11 ~gh~--~r--~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~h-------krsVRsvAwsp~g~~La~a 79 (312)
T KOG0645|consen 11 SGHK--DR--VWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGH-------KRSVRSVAWSPHGRYLASA 79 (312)
T ss_pred cCCC--Cc--EEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccc-------hheeeeeeecCCCcEEEEe
Confidence 4898 43 678888874 899999999999999985 56777775433 258999998 58899999
Q ss_pred eCCCCEEEEEeecC---CcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCccee
Q 046773 209 TLDGDIHVAVIDDV---ANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVM 285 (453)
Q Consensus 209 S~D~tIkvWd~~~~---g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~ 285 (453)
|.|.|+-||.-... ...++.+|...|- .|+|+++|.+ ||++|+|++|-||.+..+..|..
T Consensus 80 SFD~t~~Iw~k~~~efecv~~lEGHEnEVK----~Vaws~sG~~---LATCSRDKSVWiWe~deddEfec---------- 142 (312)
T KOG0645|consen 80 SFDATVVIWKKEDGEFECVATLEGHENEVK----CVAWSASGNY---LATCSRDKSVWIWEIDEDDEFEC---------- 142 (312)
T ss_pred eccceEEEeecCCCceeEEeeeecccccee----EEEEcCCCCE---EEEeeCCCeEEEEEecCCCcEEE----------
Confidence 99999999975541 1567777876653 5999999997 99999999999999986553321
Q ss_pred eeeeeeeeccceeEEEEcCC--ceEEEEcCCcEEEEECCCC---ceEEEEeeccCCeEEEEEEecCCEEEEEeCCCcccc
Q 046773 286 GWRMLTEFTEFVGRVRVTSH--ESAVACTSSRVITFDLRNQ---GMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQ 360 (453)
Q Consensus 286 ~w~~l~~h~~~v~~v~~s~~--~~~vas~d~tIrlWDl~t~---~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~ 360 (453)
.-.|+.|+.-|..|.++|. -++++|.|+|||+|+-..+ .|..++.+|...+...+|++.|+++++++.|+
T Consensus 143 -~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~---- 217 (312)
T KOG0645|consen 143 -IAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDG---- 217 (312)
T ss_pred -EeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCc----
Confidence 1357899999999999994 4566677899999987632 46677777766666667788889999999999
Q ss_pred CcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCC------eEEEEec-ccCCceEEEE-
Q 046773 361 NRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGG------EYMYSFR-ERIGEEVIAF- 431 (453)
Q Consensus 361 ~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG------~~l~tL~-gh~~~~V~a~- 431 (453)
+++||-.-+.-. ..|.-.+..+..+ .+.++++++ +.|+|.--..+ +.+.... .|... |+++
T Consensus 218 ---tv~Iw~~~~~~~----~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~d-VNsV~ 287 (312)
T KOG0645|consen 218 ---TVSIWRLYTDLS----GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVD-VNSVQ 287 (312)
T ss_pred ---ceEeeeeccCcc----hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccc-cceEE
Confidence 999997432210 0122224445555 344555555 99999976543 1222222 35555 8855
Q ss_pred -ecC-CCEEEEE-eCCcEEEEecC
Q 046773 432 -VGD-DRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 432 -s~d-~~~lasg-~D~~IklWDl~ 452 (453)
.|. ..+|+|+ .||+|++|.+.
T Consensus 288 w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 288 WNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred EcCCCCCceeecCCCceEEEEEec
Confidence 474 4688888 99999999874
No 31
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.95 E-value=6.4e-26 Score=226.93 Aligned_cols=265 Identities=11% Similarity=0.163 Sum_probs=209.3
Q ss_pred EEEEEec--CCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecC
Q 046773 147 CRCLTLS--DLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDV 222 (453)
Q Consensus 147 v~~lafs--~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~ 222 (453)
|+||+++ |+.||+|++||.+|||+. +|..+.+|.-|.+ .|.++... |..|++++.|+|+.+||+.+
T Consensus 238 VT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~Hkg--------PI~slKWnk~G~yilS~~vD~ttilwd~~~- 307 (524)
T KOG0273|consen 238 VTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKG--------PIFSLKWNKKGTYILSGGVDGTTILWDAHT- 307 (524)
T ss_pred cceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCC--------ceEEEEEcCCCCEEEeccCCccEEEEeccC-
Confidence 8999998 689999999999999998 5667888876554 46668776 66799999999999999977
Q ss_pred C--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEE
Q 046773 223 A--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRV 300 (453)
Q Consensus 223 g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v 300 (453)
| .+.+..|...- .-|..-.+.. +++.+.|+.|+|.-+.-.+- -.++.+|.++|+++
T Consensus 308 g~~~q~f~~~s~~~----lDVdW~~~~~----F~ts~td~~i~V~kv~~~~P--------------~~t~~GH~g~V~al 365 (524)
T KOG0273|consen 308 GTVKQQFEFHSAPA----LDVDWQSNDE----FATSSTDGCIHVCKVGEDRP--------------VKTFIGHHGEVNAL 365 (524)
T ss_pred ceEEEeeeeccCCc----cceEEecCce----EeecCCCceEEEEEecCCCc--------------ceeeecccCceEEE
Confidence 5 23344454320 0133322222 57889999999998744331 14577899999999
Q ss_pred EEcCCceE--EEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEec---------CCEEEEEeCCCccccCcceEEEEE
Q 046773 301 RVTSHESA--VACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVN---------AEAYIVVENRELENQNRRLAIVRR 369 (453)
Q Consensus 301 ~~s~~~~~--vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~---------g~~l~s~s~dg~~~~~~~~i~Iw~ 369 (453)
+++|.+.+ ++|+|+|+|||.+....|.+.+..|.+.++....+|. +..+++++.|+ ++++||
T Consensus 366 k~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~ds-------tV~lwd 438 (524)
T KOG0273|consen 366 KWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDS-------TVKLWD 438 (524)
T ss_pred EECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCC-------eEEEEE
Confidence 99987754 4456789999999988887777677766655455554 34788999999 999999
Q ss_pred cCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCc
Q 046773 370 VDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTN 445 (453)
Q Consensus 370 ~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~ 445 (453)
+..|.++++|..|...|.++.|+|+++|+++++- +.|.||++.+|+..+.+.+- +. |. +++.+|..|... +|+.
T Consensus 439 v~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~-~~-Ifel~Wn~~G~kl~~~~sd~~ 516 (524)
T KOG0273|consen 439 VESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT-GG-IFELCWNAAGDKLGACASDGS 516 (524)
T ss_pred ccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCC-Ce-EEEEEEcCCCCEEEEEecCCC
Confidence 9999999999999888999999999999998887 99999999999999998654 34 55 677888888766 9999
Q ss_pred EEEEecC
Q 046773 446 IHLWDFG 452 (453)
Q Consensus 446 IklWDl~ 452 (453)
|.+-||.
T Consensus 517 vcvldlr 523 (524)
T KOG0273|consen 517 VCVLDLR 523 (524)
T ss_pred ceEEEec
Confidence 9999874
No 32
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.95 E-value=3.5e-27 Score=248.14 Aligned_cols=196 Identities=17% Similarity=0.215 Sum_probs=163.9
Q ss_pred CCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCC
Q 046773 138 DVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGD 213 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~t 213 (453)
||.-| |+...|+| ++|+|+|-|.|||||.+.|-.|+-.++||.. .|..++|. |-+.||||.|+|
T Consensus 449 GH~GP----Vyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~--------PVwdV~F~P~GyYFatas~D~t 516 (707)
T KOG0263|consen 449 GHSGP----VYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLA--------PVWDVQFAPRGYYFATASHDQT 516 (707)
T ss_pred cCCCc----eeeeeecccccceeeccCCcceeeeecccceeEEEecCCCc--------ceeeEEecCCceEEEecCCCce
Confidence 89977 88999987 5999999999999999999999999999865 35666676 557899999999
Q ss_pred EEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeee
Q 046773 214 IHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTE 292 (453)
Q Consensus 214 IkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~ 292 (453)
.++|..+..- .+.+.+|..+|. .|.|+|++.+ +|+||.|+|||+||+.+|... +.+.|
T Consensus 517 ArLWs~d~~~PlRifaghlsDV~----cv~FHPNs~Y---~aTGSsD~tVRlWDv~~G~~V--------------RiF~G 575 (707)
T KOG0263|consen 517 ARLWSTDHNKPLRIFAGHLSDVD----CVSFHPNSNY---VATGSSDRTVRLWDVSTGNSV--------------RIFTG 575 (707)
T ss_pred eeeeecccCCchhhhcccccccc----eEEECCcccc---cccCCCCceEEEEEcCCCcEE--------------EEecC
Confidence 9999987621 344455655543 4899999986 899999999999999999843 23568
Q ss_pred eccceeEEEEcCCceEEEE--cCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEc
Q 046773 293 FTEFVGRVRVTSHESAVAC--TSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRV 370 (453)
Q Consensus 293 h~~~v~~v~~s~~~~~vas--~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~ 370 (453)
|+++|.+|+|+|.+..++| .|+.|+|||+.++..+.++.+|+..+...+|+.+|+.||+++.|. ++++||+
T Consensus 576 H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dn-------sV~lWD~ 648 (707)
T KOG0263|consen 576 HKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADN-------SVRLWDL 648 (707)
T ss_pred CCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCC-------eEEEEEc
Confidence 9999999999998876665 468999999999887777788877777777888999999999999 9999998
Q ss_pred CCC
Q 046773 371 DTF 373 (453)
Q Consensus 371 ~tg 373 (453)
...
T Consensus 649 ~~~ 651 (707)
T KOG0263|consen 649 TKV 651 (707)
T ss_pred hhh
Confidence 753
No 33
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=2.7e-25 Score=232.40 Aligned_cols=273 Identities=14% Similarity=0.158 Sum_probs=218.2
Q ss_pred eEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCC-CCEEEEEe
Q 046773 145 LTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLD-GDIHVAVI 219 (453)
Q Consensus 145 v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D-~tIkvWd~ 219 (453)
+-|+|.+|.. +.||+|-..+...|+++....+++.|.--. ..|..++|+ |+-||.|+.- +.+-||+|
T Consensus 266 ~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~--------~~I~t~~~N~tGDWiA~g~~klgQLlVweW 337 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISD--------QKILTVSFNSTGDWIAFGCSKLGQLLVWEW 337 (893)
T ss_pred cceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeeccc--------ceeeEEEecccCCEEEEcCCccceEEEEEe
Confidence 4489999986 689999999999999999999999986311 256778887 9999998764 67889999
Q ss_pred ecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeecccee
Q 046773 220 DDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVG 298 (453)
Q Consensus 220 ~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~ 298 (453)
.+.- +--.++|...+. .++++|||++ +|+|+.|+.|||||..+|-|+ +|+..|++.|.
T Consensus 338 qsEsYVlKQQgH~~~i~----~l~YSpDgq~---iaTG~eDgKVKvWn~~SgfC~--------------vTFteHts~Vt 396 (893)
T KOG0291|consen 338 QSESYVLKQQGHSDRIT----SLAYSPDGQL---IATGAEDGKVKVWNTQSGFCF--------------VTFTEHTSGVT 396 (893)
T ss_pred eccceeeecccccccee----eEEECCCCcE---EEeccCCCcEEEEeccCceEE--------------EEeccCCCceE
Confidence 8722 222345655443 5899999997 889999999999999999876 57889999999
Q ss_pred EEEEcCC--ceEEEEcCCcEEEEECCCCceEEEEeecc-CCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCee
Q 046773 299 RVRVTSH--ESAVACTSSRVITFDLRNQGMVLGERGYG-RGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEE 375 (453)
Q Consensus 299 ~v~~s~~--~~~vas~d~tIrlWDl~t~~~~~~~~g~~-~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~ 375 (453)
.|+|+-+ .++++|-|+|||.||+....+-++++... -+..+.+++|+|+.+..|+.|. -.|.||+..||+.
T Consensus 397 ~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~------F~IfvWS~qTGql 470 (893)
T KOG0291|consen 397 AVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDS------FEIFVWSVQTGQL 470 (893)
T ss_pred EEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccce------EEEEEEEeecCee
Confidence 9999744 45667789999999999988877764332 2445667788898877776554 2899999999999
Q ss_pred EEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCC-eEEEEecccCCceEEEEecCCCEEEEE-eCCcEEEEecC
Q 046773 376 VCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGG-EYMYSFRERIGEEVIAFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 376 v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG-~~l~tL~gh~~~~V~a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
+..+.+|+..|.++.|++.+..++++|- +|||+||+-.- ....+|+-.++..-.+|+|||+.||.+ -||.|.+||..
T Consensus 471 lDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~ 550 (893)
T KOG0291|consen 471 LDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIK 550 (893)
T ss_pred eehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhh
Confidence 9999999999999999999988887776 99999999753 344566533343122788999999999 99999999974
No 34
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=1.9e-25 Score=217.89 Aligned_cols=274 Identities=11% Similarity=0.130 Sum_probs=199.5
Q ss_pred CCCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE--cCCeEEEEeCCC
Q 046773 137 SDVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATLDG 212 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~D~ 212 (453)
..|+ ++ |.|++.+| +++|||+.|...-||++.+|+.+..+.||.. +|.++.| +|.+||||.+++
T Consensus 61 ~~H~--~s--vFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKD--------SVt~~~FshdgtlLATGdmsG 128 (399)
T KOG0296|consen 61 DKHT--DS--VFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKD--------SVTCCSFSHDGTLLATGDMSG 128 (399)
T ss_pred hhcC--Cc--eEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCC--------ceEEEEEccCceEEEecCCCc
Confidence 3798 55 56666665 6999999999999999999999999999764 6777776 588999999999
Q ss_pred CEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeee
Q 046773 213 DIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTE 292 (453)
Q Consensus 213 tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~ 292 (453)
.|+||.+.+ | ......... ..+-.=+..+|.++. |+.|+.|+.|-+|.+.++... +++.|
T Consensus 129 ~v~v~~~st-g-~~~~~~~~e-~~dieWl~WHp~a~i---llAG~~DGsvWmw~ip~~~~~--------------kv~~G 188 (399)
T KOG0296|consen 129 KVLVFKVST-G-GEQWKLDQE-VEDIEWLKWHPRAHI---LLAGSTDGSVWMWQIPSQALC--------------KVMSG 188 (399)
T ss_pred cEEEEEccc-C-ceEEEeecc-cCceEEEEecccccE---EEeecCCCcEEEEECCCccee--------------eEecC
Confidence 999999988 4 111111011 111223678888875 889999999999999885421 34667
Q ss_pred eccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEEeeccC-CeEE------------------------------
Q 046773 293 FTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGERGYGR-GLYV------------------------------ 339 (453)
Q Consensus 293 h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~g~~~-~~~v------------------------------ 339 (453)
|..++++=.|.|++ ++.+..|++|++||+.|++.+++..+-.+ ....
T Consensus 189 h~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv 268 (399)
T KOG0296|consen 189 HNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVV 268 (399)
T ss_pred CCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEE
Confidence 88888888888776 45666789999999999987765431000 0000
Q ss_pred EEEEe--------------------cCC---EEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCC
Q 046773 340 TSVDV--------------------NAE---AYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQG 396 (453)
Q Consensus 340 ~~~~~--------------------~g~---~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~ 396 (453)
.++.+ ... ..+.++.|| +|-|||..+-..... =.|++.|..+.+-+ ..
T Consensus 269 ~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG-------~i~iyD~a~~~~R~~-c~he~~V~~l~w~~-t~ 339 (399)
T KOG0296|consen 269 NCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDG-------TIAIYDLAASTLRHI-CEHEDGVTKLKWLN-TD 339 (399)
T ss_pred EecCCCCccccccchhhhhhhhhcccccccchhhcccccc-------eEEEEecccchhhee-ccCCCceEEEEEcC-cc
Confidence 01110 000 113445555 899999876432222 23667788888776 56
Q ss_pred eEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 397 YALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 397 ~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
+++++.. |+||+||..||+++.++.||... |. +++||.++|+|+ .|++.+|++..
T Consensus 340 ~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~-Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 340 YLLTACANGKVRQWDARTGQLKFTYTGHQMG-ILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred hheeeccCceEEeeeccccceEEEEecCchh-eeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 7776665 99999999999999999999999 87 567999999999 99999999875
No 35
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=5.6e-26 Score=233.33 Aligned_cols=264 Identities=14% Similarity=0.154 Sum_probs=213.3
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCC--eEEEEeCCCCEEEEEeecC
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDS--QLIFATLDGDIHVAVIDDV 222 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~--~LasgS~D~tIkvWd~~~~ 222 (453)
|.|++|-| ..+.++-|.|+|.|||-+|...++.|.--. ..|++..|-++ -+++||.|..|||+|.++.
T Consensus 16 VKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~--------~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ 87 (794)
T KOG0276|consen 16 VKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSE--------VPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG 87 (794)
T ss_pred eeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecc--------cchhhheeeeccceEEEecCCceEEEEecccc
Confidence 78999987 589999999999999999999999996322 25666667665 4999999999999999983
Q ss_pred C-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEE
Q 046773 223 A-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVR 301 (453)
Q Consensus 223 g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~ 301 (453)
. .+++..|...+. .|+.+|.-.+ +.|+|.|-+||+||-+.+=.. =+++.||+-.|.+|+
T Consensus 88 ekV~~FeAH~DyIR----~iavHPt~P~---vLtsSDDm~iKlW~we~~wa~-------------~qtfeGH~HyVMqv~ 147 (794)
T KOG0276|consen 88 EKVKTFEAHSDYIR----SIAVHPTLPY---VLTSSDDMTIKLWDWENEWAC-------------EQTFEGHEHYVMQVA 147 (794)
T ss_pred eeeEEeecccccee----eeeecCCCCe---EEecCCccEEEEeeccCceee-------------eeEEcCcceEEEEEE
Confidence 2 677777876654 4788888765 679999999999998765311 145678889999999
Q ss_pred EcCC---ceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCC--EEEEEeCCCccccCcceEEEEEcCCCeeE
Q 046773 302 VTSH---ESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAE--AYIVVENRELENQNRRLAIVRRVDTFEEV 376 (453)
Q Consensus 302 ~s~~---~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~--~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v 376 (453)
|.|. ..+++|-|.|||+|.+.+..+..++.||..++.+.++-+-|+ .+++++.|- ++||||..|.+|+
T Consensus 148 fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~-------tiKvWDyQtk~CV 220 (794)
T KOG0276|consen 148 FNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDL-------TIKVWDYQTKSCV 220 (794)
T ss_pred ecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCc-------eEEEeecchHHHH
Confidence 9874 467778899999999999888888888887654433333333 689999888 9999999999999
Q ss_pred EEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEEEEe--cCCCEEEEE-eCCcE
Q 046773 377 CRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVIAFV--GDDRHVAAS-CGTNI 446 (453)
Q Consensus 377 ~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~a~s--~d~~~lasg-~D~~I 446 (453)
+++.+|.+.|..+.|+|.--.+++++. ||||||+..|-+...+|.=.-+. ||+++ +.++.|+.| ..+.|
T Consensus 221 ~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleR-vW~I~~~k~~~~i~vG~Deg~i 293 (794)
T KOG0276|consen 221 QTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLER-VWCIAAHKGDGKIAVGFDEGSV 293 (794)
T ss_pred HHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCce-EEEEeecCCCCeEEEeccCCcE
Confidence 999999999999999998778888888 99999999998877777544455 99887 677788889 44444
No 36
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=1.4e-24 Score=227.02 Aligned_cols=287 Identities=15% Similarity=0.209 Sum_probs=209.9
Q ss_pred CceeeEEeeCCCCCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeE--EEEecCCCCCccccccceEEEEEEc
Q 046773 126 RYTHFNLYFDPSDVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLH--VRTFRPQHSDRLGQFSRAVSGIIIT 201 (453)
Q Consensus 126 ~~~~~~~~~~~~gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~--~~tl~gh~~~~~~~~s~~V~~i~f~ 201 (453)
.+.||++.-...||- |. +.|+.|+. ++|++||.|-++|||+++.-+- .+.|.||.. .|.+..|.
T Consensus 131 ~~~pFvl~r~~~g~f--dd--i~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd--------~VvacfF~ 198 (893)
T KOG0291|consen 131 EFNPFVLHRTYLGHF--DD--ITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKD--------YVVACFFG 198 (893)
T ss_pred ccCcceEeeeecCCc--cc--eeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCc--------ceEEEEec
Confidence 466777766667998 55 78999986 6999999999999999988776 666778764 45555554
Q ss_pred --CCeEEEEeCCCCEEEEEeec----------------------CC-c--c---eEEe-----------------eec--
Q 046773 202 --DSQLIFATLDGDIHVAVIDD----------------------VA-N--E---TRTA-----------------HFG-- 232 (453)
Q Consensus 202 --g~~LasgS~D~tIkvWd~~~----------------------~g-~--~---~~~~-----------------~~~-- 232 (453)
...|++-|.||-+-+|-.+. .+ . + .+.. |.+
T Consensus 199 ~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~ 278 (893)
T KOG0291|consen 199 ANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTN 278 (893)
T ss_pred cCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCce
Confidence 44699999999999997761 00 0 0 0000 100
Q ss_pred -------------------------ceecCce-EEEEeCCCceeeEEEEeeCC-CeEEEeeCCCCc-EEecccccCCcce
Q 046773 233 -------------------------SVMDDGV-LIDFTGCSRYWVGLYAGLAG-RAFHIWDRQAEE-VFVGGDLTDHNTV 284 (453)
Q Consensus 233 -------------------------~v~~~~~-~v~Fs~dg~~~~~LaSgS~D-~tIrvWD~~tg~-~~~g~~l~~~~~v 284 (453)
.|....+ .++|+..|.| ||-|+.- +-+-||+..+.. .+
T Consensus 279 ~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDW---iA~g~~klgQLlVweWqsEsYVl----------- 344 (893)
T KOG0291|consen 279 LLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDW---IAFGCSKLGQLLVWEWQSESYVL----------- 344 (893)
T ss_pred EEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCE---EEEcCCccceEEEEEeeccceee-----------
Confidence 0000001 1444544554 3333332 345566655544 22
Q ss_pred eeeeeeeeeccceeEEEEcCCceEE--EEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCc
Q 046773 285 MGWRMLTEFTEFVGRVRVTSHESAV--ACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNR 362 (453)
Q Consensus 285 ~~w~~l~~h~~~v~~v~~s~~~~~v--as~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~ 362 (453)
..++|...+++++++||+.++ ++.|+.|||||..++-|..++..|+.++...+|+..++.++++|.||
T Consensus 345 ----KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDG------ 414 (893)
T KOG0291|consen 345 ----KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDG------ 414 (893)
T ss_pred ----eccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCC------
Confidence 246899999999999997544 46789999999999999999888888888888899999999999999
Q ss_pred ceEEEEEcCCCeeEEEEEecCCCee--EEEEeeCCCeEEEEeC--CeEEEEECCCCeEEEEecccCCceEE--EEecCCC
Q 046773 363 RLAIVRRVDTFEEVCRFSLRADRNV--NVMGCMNQGYALMCVE--GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDR 436 (453)
Q Consensus 363 ~~i~Iw~~~tg~~v~~l~~~~~~v~--~~~~~~~~~~lls~s~--~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~ 436 (453)
++|.||+..+.+-++|+. |..++ .++..|.|..+.+++- -.|.||+++||+.|-.|.||.++ |. +|+|++.
T Consensus 415 -tVRAwDlkRYrNfRTft~-P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgP-Vs~l~f~~~~~ 491 (893)
T KOG0291|consen 415 -TVRAWDLKRYRNFRTFTS-PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGP-VSGLSFSPDGS 491 (893)
T ss_pred -eEEeeeecccceeeeecC-CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCc-ceeeEEccccC
Confidence 999999999988888864 33333 3444444554444442 68999999999999999999999 87 6889999
Q ss_pred EEEEE-eCCcEEEEec
Q 046773 437 HVAAS-CGTNIHLWDF 451 (453)
Q Consensus 437 ~lasg-~D~~IklWDl 451 (453)
.|||+ .|+|||+||+
T Consensus 492 ~LaS~SWDkTVRiW~i 507 (893)
T KOG0291|consen 492 LLASGSWDKTVRIWDI 507 (893)
T ss_pred eEEeccccceEEEEEe
Confidence 99999 9999999996
No 37
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.94 E-value=6.3e-26 Score=220.59 Aligned_cols=229 Identities=12% Similarity=0.144 Sum_probs=181.3
Q ss_pred eEEEEEEc--CCeEEEEeCCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCC
Q 046773 194 AVSGIIIT--DSQLIFATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQA 269 (453)
Q Consensus 194 ~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~t 269 (453)
.|++++++ +.-++|||.|+||||||+.+ | .-++++|...+. -|+||+.-.+ |+|++.|+.||.||++.
T Consensus 153 WVr~vavdP~n~wf~tgs~DrtikIwDlat-g~LkltltGhi~~vr----~vavS~rHpY---lFs~gedk~VKCwDLe~ 224 (460)
T KOG0285|consen 153 WVRSVAVDPGNEWFATGSADRTIKIWDLAT-GQLKLTLTGHIETVR----GVAVSKRHPY---LFSAGEDKQVKCWDLEY 224 (460)
T ss_pred eEEEEeeCCCceeEEecCCCceeEEEEccc-CeEEEeecchhheee----eeeecccCce---EEEecCCCeeEEEechh
Confidence 78999987 46799999999999999999 6 455666654432 3788887765 89999999999999999
Q ss_pred CcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCC
Q 046773 270 EEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAE 347 (453)
Q Consensus 270 g~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~ 347 (453)
.+..+ -.-||-+.|.++.+.|.- ++.++.|.+|||||++|...++++.||...+.-..+.+..-
T Consensus 225 nkvIR--------------~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dp 290 (460)
T KOG0285|consen 225 NKVIR--------------HYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDP 290 (460)
T ss_pred hhhHH--------------HhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCC
Confidence 88321 123677889999999754 45556688999999999888888888765443333444466
Q ss_pred EEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeCCeEEEEECCCCeEEEEecccCCce
Q 046773 348 AYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYMYSFRERIGEE 427 (453)
Q Consensus 348 ~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~~tIrlWD~~tG~~l~tL~gh~~~~ 427 (453)
.++++|.|+ +|++||+..|+...+++-|.-.++.+..+|.-..+++++...||-|++..|+.++.|.||.+-
T Consensus 291 qvit~S~D~-------tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~i- 362 (460)
T KOG0285|consen 291 QVITGSHDS-------TVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAI- 362 (460)
T ss_pred ceEEecCCc-------eEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccce-
Confidence 789999999 999999999999999988877788888877544434444489999999999999999999998
Q ss_pred EEEEec-CCCEEEEE-eCCcEEEEecC
Q 046773 428 VIAFVG-DDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 428 V~a~s~-d~~~lasg-~D~~IklWDl~ 452 (453)
|++++- ++..+++| ..+.+..||..
T Consensus 363 intl~~nsD~v~~~G~dng~~~fwdwk 389 (460)
T KOG0285|consen 363 INTLSVNSDGVLVSGGDNGSIMFWDWK 389 (460)
T ss_pred eeeeeeccCceEEEcCCceEEEEEecC
Confidence 998774 44477788 77899999863
No 38
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=3.6e-26 Score=222.68 Aligned_cols=302 Identities=18% Similarity=0.222 Sum_probs=212.3
Q ss_pred CCCCcCcchhHHHHHHHhhhhhcccccCceeeEEeeCCCCCCCCCCeEEEEEEecCC---EEEEEeCCCcEEEEECCCCe
Q 046773 99 GRTNLLHATWRDEYIYRHRTAQNFRTRRYTHFNLYFDPSDVDNPDGLTCRCLTLSDL---YLACGFADGAVRLFDLTTRL 175 (453)
Q Consensus 99 ~~~~~~~~~Wk~~y~~~~~~~~nw~~g~~~~~~~~~~~~gh~~~d~v~v~~lafs~~---~LaSGS~D~TIrlWD~~tg~ 175 (453)
|..|||++ .+||.+++++.|. .+++++||+.+++ ||. || |+||+=.++ .+||||.||.|||||+.+.+
T Consensus 30 p~lhPfe~--~rEy~RALNAtKl-eR~fakPFv~~L~--gHr--dG--V~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~ 100 (433)
T KOG0268|consen 30 PALHPFER--AREYTRALNATKL-ERVFAKPFVGSLD--GHR--DG--VSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE 100 (433)
T ss_pred CcCChhhh--HHHHHHHhhhHHH-HHHhhccchhhcc--ccc--cc--cchhhcCcchhhhhhccccCceEEEEehhhhh
Confidence 45688888 8999999999999 9999999999985 999 56 789998874 58999999999999999999
Q ss_pred EEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEE
Q 046773 176 HVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYA 255 (453)
Q Consensus 176 ~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaS 255 (453)
|+++|+.|.+ .|.+|+++....+|++.|+|||.|-++.+-.+++-+ ..+..+ |+.+-.+ ...||
T Consensus 101 ~~~~f~AH~G--------~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~p~~tilg--~s~~~g---Idh~~~~---~~FaT 164 (433)
T KOG0268|consen 101 CIRTFKAHEG--------LVRGICVTQTSFFTVGDDKTVKQWKIDGPPLHTILG--KSVYLG---IDHHRKN---SVFAT 164 (433)
T ss_pred hhheeecccC--------ceeeEEecccceEEecCCcceeeeeccCCcceeeec--cccccc---ccccccc---ccccc
Confidence 9999998765 689999998889999999999999987632233221 111100 1111111 11344
Q ss_pred eeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce-EEE-E-cCCcEEEEECCCCceEEEEee
Q 046773 256 GLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES-AVA-C-TSSRVITFDLRNQGMVLGERG 332 (453)
Q Consensus 256 gS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~-~va-s-~d~tIrlWDl~t~~~~~~~~g 332 (453)
++ ..|.|||.+--.-+ .-+.| -.+.+.+++|+|-++ +++ | +|.+|-|+|++++.-++....
T Consensus 165 cG--e~i~IWD~~R~~Pv---------~smsw-----G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~ 228 (433)
T KOG0268|consen 165 CG--EQIDIWDEQRDNPV---------SSMSW-----GADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL 228 (433)
T ss_pred cC--ceeeecccccCCcc---------ceeec-----CCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee
Confidence 33 45899998654311 00112 136678899998653 333 3 678999999999865443211
Q ss_pred ccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCC-CeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEE
Q 046773 333 YGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDT-FEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWE 410 (453)
Q Consensus 333 ~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~t-g~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD 410 (453)
.. .-.-.|++|.+-.+++|+.|- .+...|... -+++.....|.+.|..+.|+|-|.-++++|- ++|||+.
T Consensus 229 ~m-RTN~IswnPeafnF~~a~ED~-------nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~ 300 (433)
T KOG0268|consen 229 TM-RTNTICWNPEAFNFVAANEDH-------NLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFP 300 (433)
T ss_pred ec-cccceecCccccceeeccccc-------cceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEee
Confidence 11 111245666444566666666 555555442 2456666777788899999999999888876 9999999
Q ss_pred CCCCeEEEEecccC---CceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 411 VEGGEYMYSFRERI---GEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 411 ~~tG~~l~tL~gh~---~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
+..|..--+. |+ .. |. .++.|.++|+|| .|+.|+||.-.
T Consensus 301 ~~~~~SRdiY--htkRMq~-V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 301 VNHGHSRDIY--HTKRMQH-VFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred cCCCcchhhh--hHhhhhe-eeEEEEeccccEEEecCCCcceeeeecc
Confidence 9877543222 22 22 44 568999999999 99999999743
No 39
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=8.5e-25 Score=228.54 Aligned_cols=283 Identities=20% Similarity=0.245 Sum_probs=217.4
Q ss_pred CCCCCCCCCCeEEEEEEecCC--EEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCC
Q 046773 135 DPSDVDNPDGLTCRCLTLSDL--YLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDG 212 (453)
Q Consensus 135 ~~~gh~~~d~v~v~~lafs~~--~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~ 212 (453)
+..||.+- |.++.||.+ .|+||+ .+.||||+..|.+|+||+.-. .. --+.+.+.++.+++|...|
T Consensus 368 ~~~GHR~d----VRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~------l~~~Fvpgd~~Iv~G~k~G 434 (888)
T KOG0306|consen 368 EIGGHRSD----VRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YI------LASKFVPGDRYIVLGTKNG 434 (888)
T ss_pred eeccchhh----eeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cE------EEEEecCCCceEEEeccCC
Confidence 34589854 889999875 444444 568999999999999999632 10 0122445678899999999
Q ss_pred CEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeee-e-e
Q 046773 213 DIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGW-R-M 289 (453)
Q Consensus 213 tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w-~-~ 289 (453)
.+.|.|+.+.- ..+.+.|.+.+. .++.+||++. +++||.|+|||+||+.--.- .+++- +-+..+ | .
T Consensus 435 el~vfdlaS~~l~Eti~AHdgaIW----si~~~pD~~g---~vT~saDktVkfWdf~l~~~-~~gt~---~k~lsl~~~r 503 (888)
T KOG0306|consen 435 ELQVFDLASASLVETIRAHDGAIW----SISLSPDNKG---FVTGSADKTVKFWDFKLVVS-VPGTQ---KKVLSLKHTR 503 (888)
T ss_pred ceEEEEeehhhhhhhhhcccccee----eeeecCCCCc---eEEecCCcEEEEEeEEEEec-cCccc---ceeeeeccce
Confidence 99999998722 566778888776 4899999986 77999999999999752110 00000 000000 1 1
Q ss_pred eeeeccceeEEEEcCCceEEEE--cCCcEEEEECCCCceEEEEeeccCCeEEEEE--EecCCEEEEEeCCCccccCcceE
Q 046773 290 LTEFTEFVGRVRVTSHESAVAC--TSSRVITFDLRNQGMVLGERGYGRGLYVTSV--DVNAEAYIVVENRELENQNRRLA 365 (453)
Q Consensus 290 l~~h~~~v~~v~~s~~~~~vas--~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~--~~~g~~l~s~s~dg~~~~~~~~i 365 (453)
.-..++-|.||++||++.+++- -|+||+++=+.|-+--+.+ .+|..+|.|+ +||...++++|.|. ++
T Consensus 504 tLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsL--YGHkLPV~smDIS~DSklivTgSADK-------nV 574 (888)
T KOG0306|consen 504 TLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSL--YGHKLPVLSMDISPDSKLIVTGSADK-------NV 574 (888)
T ss_pred EEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeee--cccccceeEEeccCCcCeEEeccCCC-------ce
Confidence 1245688999999999876664 4899999999986544444 4456677775 57788999999999 99
Q ss_pred EEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-
Q 046773 366 IVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS- 441 (453)
Q Consensus 366 ~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg- 441 (453)
|||=++=|.|-..+-.|.+.|.++.|.|....+.+|+- +.||-||-+.-+++++|.||+.. || +++|+|.+++|+
T Consensus 575 KiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~e-v~cLav~~~G~~vvs~s 653 (888)
T KOG0306|consen 575 KIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSE-VWCLAVSPNGSFVVSSS 653 (888)
T ss_pred EEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchhe-eeeeEEcCCCCeEEecc
Confidence 99999999998888889999999999997766677776 99999999999999999999999 99 567999999999
Q ss_pred eCCcEEEEec
Q 046773 442 CGTNIHLWDF 451 (453)
Q Consensus 442 ~D~~IklWDl 451 (453)
.|.+|++|.-
T Consensus 654 hD~sIRlwE~ 663 (888)
T KOG0306|consen 654 HDKSIRLWER 663 (888)
T ss_pred CCceeEeeec
Confidence 9999999963
No 40
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.93 E-value=1.2e-25 Score=221.79 Aligned_cols=267 Identities=14% Similarity=0.120 Sum_probs=200.5
Q ss_pred EEEEEe--cCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE--cCCeEEEEeCCCCEEEEEeecC
Q 046773 147 CRCLTL--SDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATLDGDIHVAVIDDV 222 (453)
Q Consensus 147 v~~laf--s~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~D~tIkvWd~~~~ 222 (453)
|..+.+ +|+.|+|||+-|..-||+..+..--..+..|.. .|+++.. ++..++||+.|+.||+|+-+-.
T Consensus 99 V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs--------~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn 170 (464)
T KOG0284|consen 99 VNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDS--------PVRTMKWSHNGTWMISGDKGGMIKYWQPNMN 170 (464)
T ss_pred eeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcc--------cceeEEEccCCCEEEEcCCCceEEecccchh
Confidence 444555 557999999999999999865543333455543 6788765 5889999999999999986542
Q ss_pred CcceEEeee-cceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEE
Q 046773 223 ANETRTAHF-GSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVR 301 (453)
Q Consensus 223 g~~~~~~~~-~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~ 301 (453)
-+.....|. ..|. .++|||+... .+|+|.|++|+|||+.-.+. + ..|+||---|.+|.
T Consensus 171 nVk~~~ahh~eaIR----dlafSpnDsk---F~t~SdDg~ikiWdf~~~ke---------e-----~vL~GHgwdVksvd 229 (464)
T KOG0284|consen 171 NVKIIQAHHAEAIR----DLAFSPNDSK---FLTCSDDGTIKIWDFRMPKE---------E-----RVLRGHGWDVKSVD 229 (464)
T ss_pred hhHHhhHhhhhhhh----eeccCCCCce---eEEecCCCeEEEEeccCCch---------h-----heeccCCCCcceec
Confidence 233344443 3332 3899987543 67999999999999876541 0 12456666688888
Q ss_pred EcCCc--eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEE
Q 046773 302 VTSHE--SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRF 379 (453)
Q Consensus 302 ~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l 379 (453)
.+|.. ++++|.|..||+||.+++.|+.++.+|.+.+.-..|.++++.|+++|.|. .+++.|+.+-++++++
T Consensus 230 WHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~-------~~kv~DiR~mkEl~~~ 302 (464)
T KOG0284|consen 230 WHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQ-------SCKVFDIRTMKELFTY 302 (464)
T ss_pred cCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCc-------eEEEEehhHhHHHHHh
Confidence 88754 34455678999999999999887755544444444677788999999999 9999999988888889
Q ss_pred EecCCCeeEEEEeeCCCeEE-EEeC-CeEEEEECCCCeEEEEe-cccCCceEEEE--ecCCCEEEEE-eCCcEEEEe
Q 046773 380 SLRADRNVNVMGCMNQGYAL-MCVE-GVIRVWEVEGGEYMYSF-RERIGEEVIAF--VGDDRHVAAS-CGTNIHLWD 450 (453)
Q Consensus 380 ~~~~~~v~~~~~~~~~~~ll-s~s~-~tIrlWD~~tG~~l~tL-~gh~~~~V~a~--s~d~~~lasg-~D~~IklWD 450 (453)
+.|...+.++..+|--..++ +++. +.|..|.+-.-+.+-.+ .+|... ||++ .|=|.+|++| .|+++|.|.
T Consensus 303 r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~-iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 303 RGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGE-IWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred hcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccc-eeeeeccccceeEeecCCCcceeeec
Confidence 99988899999988444444 4444 99999999866766666 467777 9965 5999999999 999999995
No 41
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1e-24 Score=202.38 Aligned_cols=235 Identities=16% Similarity=0.153 Sum_probs=185.1
Q ss_pred EEEecCCCCCccccccceEEEEEE--cCCeEEEEeCCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeE
Q 046773 177 VRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVG 252 (453)
Q Consensus 177 ~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~ 252 (453)
+++|..+.+ +|+++-| +|...++++.|+|||+||... | ++++.+|...|.+ ++.+.|...
T Consensus 10 ~~~l~~~qg--------aV~avryN~dGnY~ltcGsdrtvrLWNp~r-g~liktYsghG~EVlD----~~~s~Dnsk--- 73 (307)
T KOG0316|consen 10 LSILDCAQG--------AVRAVRYNVDGNYCLTCGSDRTVRLWNPLR-GALIKTYSGHGHEVLD----AALSSDNSK--- 73 (307)
T ss_pred ceeeccccc--------ceEEEEEccCCCEEEEcCCCceEEeecccc-cceeeeecCCCceeee----ccccccccc---
Confidence 456666543 6888877 588999999999999999876 5 7888888666542 444455432
Q ss_pred EEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEE--cCCcEEEEECCCCce--EE
Q 046773 253 LYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVAC--TSSRVITFDLRNQGM--VL 328 (453)
Q Consensus 253 LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas--~d~tIrlWDl~t~~~--~~ 328 (453)
++||+.|+.|.+||++||+.. +-+++|.+.||.|+|+....+++| -|.+||+||-++... +.
T Consensus 74 f~s~GgDk~v~vwDV~TGkv~--------------Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQ 139 (307)
T KOG0316|consen 74 FASCGGDKAVQVWDVNTGKVD--------------RRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQ 139 (307)
T ss_pred cccCCCCceEEEEEcccCeee--------------eecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccc
Confidence 789999999999999999954 236788899999999987765554 478999999987632 12
Q ss_pred EEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEE
Q 046773 329 GERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIR 407 (453)
Q Consensus 329 ~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIr 407 (453)
.+. .....|.+++..+..++.+|.|| ++|.+|+..|+.....-++| |.++.+++++...++++- ++||
T Consensus 140 ild--ea~D~V~Si~v~~heIvaGS~DG-------tvRtydiR~G~l~sDy~g~p--it~vs~s~d~nc~La~~l~stlr 208 (307)
T KOG0316|consen 140 ILD--EAKDGVSSIDVAEHEIVAGSVDG-------TVRTYDIRKGTLSSDYFGHP--ITSVSFSKDGNCSLASSLDSTLR 208 (307)
T ss_pred hhh--hhcCceeEEEecccEEEeeccCC-------cEEEEEeecceeehhhcCCc--ceeEEecCCCCEEEEeeccceee
Confidence 221 11234688899999999999999 99999999887655555555 889999999988887776 9999
Q ss_pred EEECCCCeEEEEecccCCceEE---EEecCCCEEEEE-eCCcEEEEecC
Q 046773 408 VWEVEGGEYMYSFRERIGEEVI---AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 408 lWD~~tG~~l~tL~gh~~~~V~---a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
|-|-+||+.|..+.||..-... +|.....++++| +||.|.+||+-
T Consensus 209 LlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLv 257 (307)
T KOG0316|consen 209 LLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLV 257 (307)
T ss_pred ecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEec
Confidence 9999999999999999765222 566677889999 99999999973
No 42
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=3.2e-25 Score=213.23 Aligned_cols=273 Identities=19% Similarity=0.245 Sum_probs=208.5
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecC
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDV 222 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~ 222 (453)
+.|-.||| .+|+|||.|+-|.+||..||+..+-|+-...+.|-....+|.+|.|+ ..+|||||.|+.||||.+.+
T Consensus 216 ~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t- 294 (508)
T KOG0275|consen 216 VECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET- 294 (508)
T ss_pred hhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec-
Confidence 67899987 59999999999999999999988887654433333344689999996 56899999999999999998
Q ss_pred CcceE---EeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeE
Q 046773 223 ANETR---TAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGR 299 (453)
Q Consensus 223 g~~~~---~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~ 299 (453)
|...+ +.|+..|. .+.||.|+.. +.|+|.|.||||--+++|+++ +.++||++.|+.
T Consensus 295 G~ClRrFdrAHtkGvt----~l~FSrD~Sq---iLS~sfD~tvRiHGlKSGK~L--------------KEfrGHsSyvn~ 353 (508)
T KOG0275|consen 295 GQCLRRFDRAHTKGVT----CLSFSRDNSQ---ILSASFDQTVRIHGLKSGKCL--------------KEFRGHSSYVNE 353 (508)
T ss_pred chHHHHhhhhhccCee----EEEEccCcch---hhcccccceEEEeccccchhH--------------HHhcCccccccc
Confidence 62222 24665543 5899999875 679999999999999999965 346789999999
Q ss_pred EEEcCCc--eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEE---ecCCEEEEEeCCCccccCcceEEEEEcCCCe
Q 046773 300 VRVTSHE--SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVD---VNAEAYIVVENRELENQNRRLAIVRRVDTFE 374 (453)
Q Consensus 300 v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~---~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~ 374 (453)
+.|++++ ++++|+|++||+|+..|.+|+.+++.-+....|+++- .+++.++...... ++-|-++ .|+
T Consensus 354 a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsn-------tv~imn~-qGQ 425 (508)
T KOG0275|consen 354 ATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSN-------TVYIMNM-QGQ 425 (508)
T ss_pred eEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCC-------eEEEEec-cce
Confidence 9998765 6788899999999999999988764333344555543 3456777776666 6666555 367
Q ss_pred eEEEEEecC---CCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEEEE--ecCCCEEEEE-eCCcEE
Q 046773 375 EVCRFSLRA---DRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVIAF--VGDDRHVAAS-CGTNIH 447 (453)
Q Consensus 375 ~v~~l~~~~---~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~a~--s~d~~~lasg-~D~~Ik 447 (453)
-+.+|.... ........+|-|.++...+. +.+....+.+|+.-++|.-|... |..+ .|-.+.|||- +|+.+|
T Consensus 426 vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkd-vIGl~HHPHqNllAsYsEDgllK 504 (508)
T KOG0275|consen 426 VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKD-VIGLTHHPHQNLLASYSEDGLLK 504 (508)
T ss_pred EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccccc-ccccccCcccchhhhhcccchhh
Confidence 777764321 11334455666776654454 99999999999999999999777 6544 4777888987 999999
Q ss_pred EEe
Q 046773 448 LWD 450 (453)
Q Consensus 448 lWD 450 (453)
||.
T Consensus 505 LWk 507 (508)
T KOG0275|consen 505 LWK 507 (508)
T ss_pred hcC
Confidence 995
No 43
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=5.5e-25 Score=226.07 Aligned_cols=198 Identities=14% Similarity=0.153 Sum_probs=164.2
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCC--eEEEEeCCCCEEEEEeecC
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDS--QLIFATLDGDIHVAVIDDV 222 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~--~LasgS~D~tIkvWd~~~~ 222 (453)
|++..|=+ +.+++||+|..|||++..|++.+++|..|.. .+++|+..+. .+.|+|.|-+||+|||+..
T Consensus 58 vRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~D--------yIR~iavHPt~P~vLtsSDDm~iKlW~we~~ 129 (794)
T KOG0276|consen 58 VRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSD--------YIRSIAVHPTLPYVLTSSDDMTIKLWDWENE 129 (794)
T ss_pred hhhheeeeccceEEEecCCceEEEEecccceeeEEeecccc--------ceeeeeecCCCCeEEecCCccEEEEeeccCc
Confidence 56666654 5899999999999999999999999998753 6888887654 6999999999999999872
Q ss_pred --CcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEE
Q 046773 223 --ANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRV 300 (453)
Q Consensus 223 --g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v 300 (453)
..+++.+|+..|+ .|+|.|+.. +..||+|-|+|||||.+.+... + -||.+|..-||+|
T Consensus 130 wa~~qtfeGH~HyVM----qv~fnPkD~--ntFaS~sLDrTVKVWslgs~~~---------n-----fTl~gHekGVN~V 189 (794)
T KOG0276|consen 130 WACEQTFEGHEHYVM----QVAFNPKDP--NTFASASLDRTVKVWSLGSPHP---------N-----FTLEGHEKGVNCV 189 (794)
T ss_pred eeeeeEEcCcceEEE----EEEecCCCc--cceeeeeccccEEEEEcCCCCC---------c-----eeeeccccCcceE
Confidence 1578889988877 489999865 3589999999999999976541 1 3577898999999
Q ss_pred EEcCCc----eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeE
Q 046773 301 RVTSHE----SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEV 376 (453)
Q Consensus 301 ~~s~~~----~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v 376 (453)
.+-+.+ ++++++|.+|||||-+|..|+.++.||++.+...+|.|.=-.++++|.|| |+|||...|.+..
T Consensus 190 dyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDG-------TvriWhs~Ty~lE 262 (794)
T KOG0276|consen 190 DYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDG-------TVRIWNSKTYKLE 262 (794)
T ss_pred EeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCc-------cEEEecCcceehh
Confidence 986554 46667778999999999999999999999888888888777899999999 9999998886543
Q ss_pred EEE
Q 046773 377 CRF 379 (453)
Q Consensus 377 ~~l 379 (453)
.++
T Consensus 263 ~tL 265 (794)
T KOG0276|consen 263 KTL 265 (794)
T ss_pred hhh
Confidence 333
No 44
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.93 E-value=1.6e-23 Score=234.63 Aligned_cols=228 Identities=14% Similarity=0.121 Sum_probs=175.4
Q ss_pred EEEEEecC---CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc---CCeEEEEeCCCCEEEEEee
Q 046773 147 CRCLTLSD---LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT---DSQLIFATLDGDIHVAVID 220 (453)
Q Consensus 147 v~~lafs~---~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~---g~~LasgS~D~tIkvWd~~ 220 (453)
+.+++|++ .+|||+++|++|+|||+.+++++.++.+|.. .|.+++|+ +..|+|||.|++|++||+.
T Consensus 535 v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~--------~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~ 606 (793)
T PLN00181 535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEK--------RVWSIDYSSADPTLLASGSDDGSVKLWSIN 606 (793)
T ss_pred eeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCC--------CEEEEEEcCCCCCEEEEEcCCCEEEEEECC
Confidence 45677753 6899999999999999999999999998764 58888885 4689999999999999998
Q ss_pred cCC--cceEEeeecceecCceEEEEe-CCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccce
Q 046773 221 DVA--NETRTAHFGSVMDDGVLIDFT-GCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFV 297 (453)
Q Consensus 221 ~~g--~~~~~~~~~~v~~~~~~v~Fs-~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v 297 (453)
+ + +.++..+ ..+ ..+.|+ ++|+. |++|+.|++|++||+++++.. ..++.+|...|
T Consensus 607 ~-~~~~~~~~~~-~~v----~~v~~~~~~g~~---latgs~dg~I~iwD~~~~~~~-------------~~~~~~h~~~V 664 (793)
T PLN00181 607 Q-GVSIGTIKTK-ANI----CCVQFPSESGRS---LAFGSADHKVYYYDLRNPKLP-------------LCTMIGHSKTV 664 (793)
T ss_pred C-CcEEEEEecC-CCe----EEEEEeCCCCCE---EEEEeCCCeEEEEECCCCCcc-------------ceEecCCCCCE
Confidence 7 4 2233222 111 247885 56775 889999999999999876521 13456888899
Q ss_pred eEEEEcCCc-eEEEEcCCcEEEEECCCC------ceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEc
Q 046773 298 GRVRVTSHE-SAVACTSSRVITFDLRNQ------GMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRV 370 (453)
Q Consensus 298 ~~v~~s~~~-~~vas~d~tIrlWDl~t~------~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~ 370 (453)
.+|+|.+.. ++++|.|++|+|||+.++ .++..+.+|.....+.++++++..+++++.|+ +++||+.
T Consensus 665 ~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~-------~v~iw~~ 737 (793)
T PLN00181 665 SYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETN-------EVFVYHK 737 (793)
T ss_pred EEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCC-------EEEEEEC
Confidence 999997444 566678899999999853 34555677776666778889999999999999 9999998
Q ss_pred CCCeeEEEEEe-------------cCCCeeEEEEeeCCCeEEEEeC-CeEEEEEC
Q 046773 371 DTFEEVCRFSL-------------RADRNVNVMGCMNQGYALMCVE-GVIRVWEV 411 (453)
Q Consensus 371 ~tg~~v~~l~~-------------~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~ 411 (453)
..+..+..+.+ +...|..+.+++++..+++++. |+|+|||+
T Consensus 738 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 738 AFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 76654433221 2234788889999999888887 99999997
No 45
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.93 E-value=2.3e-24 Score=205.95 Aligned_cols=229 Identities=14% Similarity=0.137 Sum_probs=180.9
Q ss_pred eEEEEEEc--CCeEEEEeCCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCC
Q 046773 194 AVSGIIIT--DSQLIFATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQA 269 (453)
Q Consensus 194 ~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~t 269 (453)
.|..+.|+ |..+|||+.|+.|.+|++.... .-.+++|.+.|.. |.|.+|+.. |+|+|.|++|+.||++|
T Consensus 49 eI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~----l~~~~d~s~---i~S~gtDk~v~~wD~~t 121 (338)
T KOG0265|consen 49 EIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVME----LHGMRDGSH---ILSCGTDKTVRGWDAET 121 (338)
T ss_pred eEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEe----eeeccCCCE---EEEecCCceEEEEeccc
Confidence 56667765 6789999999999999986532 4567789888763 899999985 88999999999999999
Q ss_pred CcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc---eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecC
Q 046773 270 EEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE---SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNA 346 (453)
Q Consensus 270 g~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~---~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g 346 (453)
|++.. .+++|++.||++..+-.+ +.++++|+|+||||+++..++++..... +....+|.-.+
T Consensus 122 G~~~r--------------k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~ky-qltAv~f~d~s 186 (338)
T KOG0265|consen 122 GKRIR--------------KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKY-QLTAVGFKDTS 186 (338)
T ss_pred ceeee--------------hhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccce-eEEEEEecccc
Confidence 99532 256888999998754333 3344667999999999988877652221 12223344456
Q ss_pred CEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCC----CeEEEEec
Q 046773 347 EAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEG----GEYMYSFR 421 (453)
Q Consensus 347 ~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~t----G~~l~tL~ 421 (453)
+.+++|.-|+ .|+|||....+++.++.+|.+.|..+..++++.++++=+= +++|+||++- -+|+..+.
T Consensus 187 ~qv~sggIdn-------~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~ 259 (338)
T KOG0265|consen 187 DQVISGGIDN-------DIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQ 259 (338)
T ss_pred cceeeccccC-------ceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEee
Confidence 7788888888 9999999988899999999999999999999998886554 9999999973 47899999
Q ss_pred ccCCc-eEE----EEecCCCEEEEE-eCCcEEEEec
Q 046773 422 ERIGE-EVI----AFVGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 422 gh~~~-~V~----a~s~d~~~lasg-~D~~IklWDl 451 (453)
||... ..+ +.+|+++.+..| .|+.|.+||.
T Consensus 260 g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~ 295 (338)
T KOG0265|consen 260 GHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDT 295 (338)
T ss_pred cchhhhhhhcceeeccCCCCccccccccceEEEeec
Confidence 88533 122 668999999988 9999999995
No 46
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.92 E-value=2e-24 Score=201.95 Aligned_cols=271 Identities=15% Similarity=0.141 Sum_probs=204.5
Q ss_pred CCCCCCCCeEEEEEEecC-----CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEe
Q 046773 137 SDVDNPDGLTCRCLTLSD-----LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFAT 209 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~-----~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS 209 (453)
.||+-| |..|+||+ -+|+|++.|+.-.|=+=+||.-+.||.||.+ +|.+...+ ..+.||++
T Consensus 11 ~ghtrp----vvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkg--------avw~~~l~~na~~aasaa 78 (334)
T KOG0278|consen 11 HGHTRP----VVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKG--------AVWSATLNKNATRAASAA 78 (334)
T ss_pred cCCCcc----eeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCc--------ceeeeecCchhhhhhhhc
Confidence 499988 88999997 2799999999999999999999999999876 56655555 34678999
Q ss_pred CCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeee
Q 046773 210 LDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGW 287 (453)
Q Consensus 210 ~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w 287 (453)
.|-|.||||.-+ | ++.+. | -+++ ..++|+.|.++ |.+|+.++-+||+|++..+-. |
T Consensus 79 adftakvw~a~t-gdelhsf~-h-khiv---k~~af~~ds~~---lltgg~ekllrvfdln~p~Ap-------p------ 136 (334)
T KOG0278|consen 79 ADFTAKVWDAVT-GDELHSFE-H-KHIV---KAVAFSQDSNY---LLTGGQEKLLRVFDLNRPKAP-------P------ 136 (334)
T ss_pred ccchhhhhhhhh-hhhhhhhh-h-hhee---eeEEecccchh---hhccchHHHhhhhhccCCCCC-------c------
Confidence 999999999877 5 34332 2 1222 14899999986 789999999999999886610 0
Q ss_pred eeeeeeccceeEEEEc-CCceEEE-EcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceE
Q 046773 288 RMLTEFTEFVGRVRVT-SHESAVA-CTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLA 365 (453)
Q Consensus 288 ~~l~~h~~~v~~v~~s-~~~~~va-s~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i 365 (453)
..+.+|+..|..|-|- .+..+++ +.|++|||||.+|+...+++.... .+....++.+|+.+. .+..+ .|
T Consensus 137 ~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s-~VtSlEvs~dG~ilT-ia~gs-------sV 207 (334)
T KOG0278|consen 137 KEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNS-PVTSLEVSQDGRILT-IAYGS-------SV 207 (334)
T ss_pred hhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCC-CCcceeeccCCCEEE-EecCc-------ee
Confidence 1245777778777763 5555555 456899999999998777653322 222344667776554 45555 89
Q ss_pred EEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEe-cccCCceEE--EEecCCCEEEEE
Q 046773 366 IVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSF-RERIGEEVI--AFVGDDRHVAAS 441 (453)
Q Consensus 366 ~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL-~gh~~~~V~--a~s~d~~~lasg 441 (453)
+.||..+...+..... |-.|.+...+|+-..++.++. .-++.+|..||+.+..+ .||.+. |. .|+|||..-|||
T Consensus 208 ~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gp-VhcVrFSPdGE~yAsG 285 (334)
T KOG0278|consen 208 KFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGP-VHCVRFSPDGELYASG 285 (334)
T ss_pred EEeccccccceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCc-eEEEEECCCCceeecc
Confidence 9999998877666543 334566666676655555555 88999999999999886 899999 87 678999999999
Q ss_pred -eCCcEEEEecC
Q 046773 442 -CGTNIHLWDFG 452 (453)
Q Consensus 442 -~D~~IklWDl~ 452 (453)
+||+|+||...
T Consensus 286 SEDGTirlWQt~ 297 (334)
T KOG0278|consen 286 SEDGTIRLWQTT 297 (334)
T ss_pred CCCceEEEEEec
Confidence 99999999864
No 47
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=4e-24 Score=211.15 Aligned_cols=273 Identities=14% Similarity=0.153 Sum_probs=193.9
Q ss_pred CCCCCCCeEEEEEEec--CCEEEEEeCCCcEEEEECCCCeE---EEEecCCCCCccccccceEEEEEE--cCCeEEEEeC
Q 046773 138 DVDNPDGLTCRCLTLS--DLYLACGFADGAVRLFDLTTRLH---VRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATL 210 (453)
Q Consensus 138 gh~~~d~v~v~~lafs--~~~LaSGS~D~TIrlWD~~tg~~---~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~ 210 (453)
.|+ |.| +=++|| |+||||+|.|.|.-||++.--.. .+||.||+. .|..|.+ |+++|++++.
T Consensus 222 ~ht--dEV--Wfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~--------~V~yi~wSPDdryLlaCg~ 289 (519)
T KOG0293|consen 222 DHT--DEV--WFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQ--------PVSYIMWSPDDRYLLACGF 289 (519)
T ss_pred hCC--CcE--EEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccC--------ceEEEEECCCCCeEEecCc
Confidence 788 565 457776 58999999999999999865544 899999875 5777765 5678999999
Q ss_pred CCCEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeee
Q 046773 211 DGDIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRM 289 (453)
Q Consensus 211 D~tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~ 289 (453)
|..+++||+.+ | ....-.+...+ ...+.+..|||.. +++||.|++|-.||......- .|.-
T Consensus 290 ~e~~~lwDv~t-gd~~~~y~~~~~~--S~~sc~W~pDg~~---~V~Gs~dr~i~~wdlDgn~~~------------~W~g 351 (519)
T KOG0293|consen 290 DEVLSLWDVDT-GDLRHLYPSGLGF--SVSSCAWCPDGFR---FVTGSPDRTIIMWDLDGNILG------------NWEG 351 (519)
T ss_pred hHheeeccCCc-chhhhhcccCcCC--CcceeEEccCCce---eEecCCCCcEEEecCCcchhh------------cccc
Confidence 99999999998 5 21111122111 1124789999986 789999999999999654421 1322
Q ss_pred eeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCC-EEEEEeCCCccccCcceEE
Q 046773 290 LTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAE-AYIVVENRELENQNRRLAI 366 (453)
Q Consensus 290 l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~-~l~s~s~dg~~~~~~~~i~ 366 (453)
.+ ...|..+++++++ +++.+.|..|++.+.++..+...... ...+.+|+.+.+ +++..+-.. ..++
T Consensus 352 vr--~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise---~~~its~~iS~d~k~~LvnL~~------qei~ 420 (519)
T KOG0293|consen 352 VR--DPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISE---EQPITSFSISKDGKLALVNLQD------QEIH 420 (519)
T ss_pred cc--cceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccc---cCceeEEEEcCCCcEEEEEccc------CeeE
Confidence 11 1347778888766 45557788999999998654321111 123566665543 455554332 2899
Q ss_pred EEEcCCCeeEEEEEecCCCe---eEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEEEEe--c-CCCEEE
Q 046773 367 VRRVDTFEEVCRFSLRADRN---VNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVIAFV--G-DDRHVA 439 (453)
Q Consensus 367 Iw~~~tg~~v~~l~~~~~~v---~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~a~s--~-d~~~la 439 (453)
+||+.....++.+.+|.... ++..+--+..+++++|. +.|+||+..+|+.+.+|.||... |++++ | |...+|
T Consensus 421 LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~-vNcVswNP~~p~m~A 499 (519)
T KOG0293|consen 421 LWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKT-VNCVSWNPADPEMFA 499 (519)
T ss_pred EeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcce-eeEEecCCCCHHHhh
Confidence 99999766666666665443 33333335567777777 99999999999999999999998 99766 5 556789
Q ss_pred EE-eCCcEEEEecC
Q 046773 440 AS-CGTNIHLWDFG 452 (453)
Q Consensus 440 sg-~D~~IklWDl~ 452 (453)
|| .|||||||-.+
T Consensus 500 SasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 500 SASDDGTIRIWGPS 513 (519)
T ss_pred ccCCCCeEEEecCC
Confidence 99 99999999754
No 48
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.92 E-value=4.5e-23 Score=192.80 Aligned_cols=259 Identities=13% Similarity=0.145 Sum_probs=185.6
Q ss_pred cccCceeeEEeeCCCCCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeE--EEEecCCCCCccccccceEEEE
Q 046773 123 RTRRYTHFNLYFDPSDVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLH--VRTFRPQHSDRLGQFSRAVSGI 198 (453)
Q Consensus 123 ~~g~~~~~~~~~~~~gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~--~~tl~gh~~~~~~~~s~~V~~i 198 (453)
..|.|..++- |. |+- |..|...+ +.||.|++- .|||+|+.++.. +.+|.+|.+ -|.++
T Consensus 28 ~tG~C~rTiq------h~--dsq-VNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~k--------NVtaV 89 (311)
T KOG0315|consen 28 LTGICSRTIQ------HP--DSQ-VNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTK--------NVTAV 89 (311)
T ss_pred hcCeEEEEEe------cC--ccc-eeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCC--------ceEEE
Confidence 4566665552 43 332 66666665 578888755 799999999974 899999866 35556
Q ss_pred EE--cCCeEEEEeCCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecc
Q 046773 199 II--TDSQLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGG 276 (453)
Q Consensus 199 ~f--~g~~LasgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~ 276 (453)
.| +|+-++|||.|+|+||||+..+..+..--|...|. .|..+|+-- -|++|..++.|||||+....+-. .
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn----~vvlhpnQt---eLis~dqsg~irvWDl~~~~c~~-~ 161 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVN----TVVLHPNQT---ELISGDQSGNIRVWDLGENSCTH-E 161 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcc----eEEecCCcc---eEEeecCCCcEEEEEccCCcccc-c
Confidence 65 69999999999999999998743222111222222 355666633 38899999999999998764210 0
Q ss_pred cccCCcceeeeeeeeeeccceeEEEEcCCceEEEE--cCCcEEEEECCCCce---EEE-EeeccCCeEEE--EEEecCCE
Q 046773 277 DLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVAC--TSSRVITFDLRNQGM---VLG-ERGYGRGLYVT--SVDVNAEA 348 (453)
Q Consensus 277 ~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas--~d~tIrlWDl~t~~~---~~~-~~g~~~~~~v~--~~~~~g~~ 348 (453)
..+ .-..+|.++.+.|++.+++. ..++..+|++-+.+. +.. .+.+.|..++. -++|+++.
T Consensus 162 liP------------e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~ 229 (311)
T KOG0315|consen 162 LIP------------EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKY 229 (311)
T ss_pred cCC------------CCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcE
Confidence 011 11246788888888865553 348999999976532 111 12233333333 37999999
Q ss_pred EEEEeCCCccccCcceEEEEEcCCC-eeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCc
Q 046773 349 YIVVENRELENQNRRLAIVRRVDTF-EEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGE 426 (453)
Q Consensus 349 l~s~s~dg~~~~~~~~i~Iw~~~tg-~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~ 426 (453)
|+++|+|. +++||+.++. +.-..+++|..|+-..+|+.++.|+++++. +++||||++.|+.++...||...
T Consensus 230 lat~ssdk-------tv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~ 302 (311)
T KOG0315|consen 230 LATCSSDK-------TVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKA 302 (311)
T ss_pred EEeecCCc-------eEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccc
Confidence 99999999 9999999987 444456777778999999999999999887 99999999999999999999776
No 49
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=2.6e-22 Score=214.28 Aligned_cols=238 Identities=14% Similarity=0.139 Sum_probs=167.6
Q ss_pred EEecCCEEE------EEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc---CCeEEEEeCCCCEEEEEee
Q 046773 150 LTLSDLYLA------CGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT---DSQLIFATLDGDIHVAVID 220 (453)
Q Consensus 150 lafs~~~La------SGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~---g~~LasgS~D~tIkvWd~~ 220 (453)
++.+++++| +|+.++.|+||++.+..++.+|.+|.. .|.+++|+ +..|||||.|++|+|||+.
T Consensus 34 ia~n~~~~A~~w~~~gGG~~gvI~L~~~~r~~~v~~L~gH~~--------~V~~lafsP~~~~lLASgS~DgtIrIWDi~ 105 (568)
T PTZ00420 34 IACSSGFVAVPWEVEGGGLIGAIRLENQMRKPPVIKLKGHTS--------SILDLQFNPCFSEILASGSEDLTIRVWEIP 105 (568)
T ss_pred EeeCCCeEEEEEEcCCCCceeEEEeeecCCCceEEEEcCCCC--------CEEEEEEcCCCCCEEEEEeCCCeEEEEECC
Confidence 445555433 477899999999999889999998764 68889886 4689999999999999997
Q ss_pred cCCc---------ceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeee
Q 046773 221 DVAN---------ETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLT 291 (453)
Q Consensus 221 ~~g~---------~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~ 291 (453)
+.+. ..+.+|...|. .|+|+|++.. .|+|+|.|++|+|||+++++... .+
T Consensus 106 t~~~~~~~i~~p~~~L~gH~~~V~----sVaf~P~g~~--iLaSgS~DgtIrIWDl~tg~~~~--------------~i- 164 (568)
T PTZ00420 106 HNDESVKEIKDPQCILKGHKKKIS----IIDWNPMNYY--IMCSSGFDSFVNIWDIENEKRAF--------------QI- 164 (568)
T ss_pred CCCccccccccceEEeecCCCcEE----EEEECCCCCe--EEEEEeCCCeEEEEECCCCcEEE--------------EE-
Confidence 5221 13455655543 4899999875 46899999999999999987321 12
Q ss_pred eeccceeEEEEcCCceEE--EEcCCcEEEEECCCCceEEEEeeccCCeEEEE-----EEecCCEEEEEeCCCccccCcce
Q 046773 292 EFTEFVGRVRVTSHESAV--ACTSSRVITFDLRNQGMVLGERGYGRGLYVTS-----VDVNAEAYIVVENRELENQNRRL 364 (453)
Q Consensus 292 ~h~~~v~~v~~s~~~~~v--as~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~-----~~~~g~~l~s~s~dg~~~~~~~~ 364 (453)
.|...|.++.|++++.++ +|.|++|+|||++++.++.++.+|.......+ |+++++.+++++.++ .++++
T Consensus 165 ~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~---~~~R~ 241 (568)
T PTZ00420 165 NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSK---NNMRE 241 (568)
T ss_pred ecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCC---CCccE
Confidence 244678999999877433 35678999999999987776667764432222 346677888877665 12347
Q ss_pred EEEEEcCC-CeeEEEEEecCC--CeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEe
Q 046773 365 AIVRRVDT-FEEVCRFSLRAD--RNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSF 420 (453)
Q Consensus 365 i~Iw~~~t-g~~v~~l~~~~~--~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL 420 (453)
++|||+.+ .+++..+..+.. .+......+++.+++++++ ++||+||+.++. ++.|
T Consensus 242 VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l 300 (568)
T PTZ00420 242 MKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKV 300 (568)
T ss_pred EEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEee
Confidence 99999985 566666544321 1122222233556666666 999999998874 3444
No 50
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.92 E-value=3.2e-22 Score=189.02 Aligned_cols=238 Identities=18% Similarity=0.257 Sum_probs=183.8
Q ss_pred EEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEE
Q 046773 178 RTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLY 254 (453)
Q Consensus 178 ~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~La 254 (453)
++|++|.. .|.+++++ ++.|++++.|+.|++|++.+.. ...+..|...+ ..+.|+|+++. |+
T Consensus 3 ~~~~~h~~--------~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i----~~~~~~~~~~~---l~ 67 (289)
T cd00200 3 RTLKGHTG--------GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPV----RDVAASADGTY---LA 67 (289)
T ss_pred hHhcccCC--------CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcce----eEEEECCCCCE---EE
Confidence 46666653 57888876 4789999999999999998722 33444454433 14899999865 78
Q ss_pred EeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc-eEEEEc-CCcEEEEECCCCceEEEEee
Q 046773 255 AGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE-SAVACT-SSRVITFDLRNQGMVLGERG 332 (453)
Q Consensus 255 SgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~-~~vas~-d~tIrlWDl~t~~~~~~~~g 332 (453)
+++.|++|+|||+.+++.. ..+..|...+.++.++++. +++++. ++.|++||+++++.......
T Consensus 68 ~~~~~~~i~i~~~~~~~~~--------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 133 (289)
T cd00200 68 SGSSDKTIRLWDLETGECV--------------RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG 133 (289)
T ss_pred EEcCCCeEEEEEcCcccce--------------EEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEecc
Confidence 9999999999999987532 2345666788999999864 455555 78999999998776655554
Q ss_pred ccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEEC
Q 046773 333 YGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEV 411 (453)
Q Consensus 333 ~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~ 411 (453)
|...+...++++++..+++++.++ .+++|+..+++.+..+..+...+..+.+++++..+++++. +.|++||+
T Consensus 134 ~~~~i~~~~~~~~~~~l~~~~~~~-------~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~ 206 (289)
T cd00200 134 HTDWVNSVAFSPDGTFVASSSQDG-------TIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDL 206 (289)
T ss_pred CCCcEEEEEEcCcCCEEEEEcCCC-------cEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEEC
Confidence 544444445556556666666688 9999999998888888877777889999999888888876 99999999
Q ss_pred CCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 412 EGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 412 ~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
.+++.+..+.+|.+. +. +++|++..++++ .|+.|++||+.
T Consensus 207 ~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~i~i~~~~ 249 (289)
T cd00200 207 STGKCLGTLRGHENG-VNSVAFSPDGYLLASGSEDGTIRVWDLR 249 (289)
T ss_pred CCCceecchhhcCCc-eEEEEEcCCCcEEEEEcCCCcEEEEEcC
Confidence 999999999888877 77 566888888888 69999999975
No 51
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.92 E-value=1e-22 Score=213.09 Aligned_cols=268 Identities=18% Similarity=0.263 Sum_probs=204.2
Q ss_pred EEEEEecCC--EEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeec-
Q 046773 147 CRCLTLSDL--YLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDD- 221 (453)
Q Consensus 147 v~~lafs~~--~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~- 221 (453)
|+|+.-+++ .||.|-.||.|||||..+++.+-+|.||.. +|+.+.|+ |.+|+|||.|+.|.|||+-.
T Consensus 68 vt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~--------AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E 139 (888)
T KOG0306|consen 68 VTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKA--------AVTTLKFDKIGTRLASGSKDTDIIVWDLVGE 139 (888)
T ss_pred EEEeeccCCcceEEEEecCceEEeeccCCCceeeeeccccc--------ceEEEEEcccCceEeecCCCccEEEEEeccc
Confidence 788877664 579999999999999999999999999765 78988887 78999999999999999743
Q ss_pred CCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEE
Q 046773 222 VANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVR 301 (453)
Q Consensus 222 ~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~ 301 (453)
.|.-.+++|...+.. .-|..+.++ |+|.|-|..||+||++|..|+. |...|...+..+.
T Consensus 140 ~Gl~rL~GHkd~iT~----~~F~~~~~~---lvS~sKDs~iK~WdL~tqhCf~--------------Thvd~r~Eiw~l~ 198 (888)
T KOG0306|consen 140 EGLFRLRGHKDSITQ----ALFLNGDSF---LVSVSKDSMIKFWDLETQHCFE--------------THVDHRGEIWALV 198 (888)
T ss_pred eeeEEeecchHHHhH----HhccCCCeE---EEEeccCceEEEEecccceeee--------------EEecccceEEEEE
Confidence 366778888665431 235554444 7899999999999999998874 3456777888888
Q ss_pred EcCCceEEEEcCCcEEEEECCCC----------ce-------------EEEE-e--------------------------
Q 046773 302 VTSHESAVACTSSRVITFDLRNQ----------GM-------------VLGE-R-------------------------- 331 (453)
Q Consensus 302 ~s~~~~~vas~d~tIrlWDl~t~----------~~-------------~~~~-~-------------------------- 331 (453)
++++..+.+..|..+++|+|... .+ ...+ .
T Consensus 199 ~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E 278 (888)
T KOG0306|consen 199 LDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEE 278 (888)
T ss_pred EecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHH
Confidence 88866666677778888888100 00 0000 0
Q ss_pred --------------------------------------------------------------------------------
Q 046773 332 -------------------------------------------------------------------------------- 331 (453)
Q Consensus 332 -------------------------------------------------------------------------------- 331 (453)
T Consensus 279 ~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~ 358 (888)
T KOG0306|consen 279 IAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTS 358 (888)
T ss_pred HHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCC
Confidence
Q ss_pred ----------eccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEE
Q 046773 332 ----------GYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMC 401 (453)
Q Consensus 332 ----------g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~ 401 (453)
-.+|..-|.++.++.+.++++|..+ ..++||+.+|.+|+++++.. -+....|+|.+++++++
T Consensus 359 p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~------~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G 430 (888)
T KOG0306|consen 359 PEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAG------ESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLG 430 (888)
T ss_pred ccccccceeeeccchhheeEEEeecCceeeeecCC------CcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEe
Confidence 0011112234444455555555544 18999999999999998643 46667788888999888
Q ss_pred eC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 402 VE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 402 s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
.. |.+.|.|+.++..+-+.+.|.+. +| +++||++..++| .|++||+|||.
T Consensus 431 ~k~Gel~vfdlaS~~l~Eti~AHdga-IWsi~~~pD~~g~vT~saDktVkfWdf~ 484 (888)
T KOG0306|consen 431 TKNGELQVFDLASASLVETIRAHDGA-IWSISLSPDNKGFVTGSADKTVKFWDFK 484 (888)
T ss_pred ccCCceEEEEeehhhhhhhhhccccc-eeeeeecCCCCceEEecCCcEEEEEeEE
Confidence 87 99999999999999999999999 99 556999999999 99999999984
No 52
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=5.8e-23 Score=213.58 Aligned_cols=264 Identities=13% Similarity=0.190 Sum_probs=197.7
Q ss_pred CCCCCCCCeEEEEEEecC-CEEEEEeCCCcEEEEECCCCeEEE--EecCCCCCccccccceEEE-EEEc---CCeEEEEe
Q 046773 137 SDVDNPDGLTCRCLTLSD-LYLACGFADGAVRLFDLTTRLHVR--TFRPQHSDRLGQFSRAVSG-IIIT---DSQLIFAT 209 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~-~~LaSGS~D~TIrlWD~~tg~~~~--tl~gh~~~~~~~~s~~V~~-i~f~---g~~LasgS 209 (453)
+||.. - |..+++.. ..++++|.|+|+|+|+-...+.+. ++.+|++ .+.. +++. .-+|++|+
T Consensus 11 ~gH~~--D--Vr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g--------~i~~~i~y~e~~~~~l~~g~ 78 (745)
T KOG0301|consen 11 EGHKS--D--VRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKG--------FIANSICYAESDKGRLVVGG 78 (745)
T ss_pred ccCcc--c--hheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcc--------eeeccceeccccCcceEeec
Confidence 48973 3 56666654 579999999999999987777653 4555543 2332 4443 34699999
Q ss_pred CCCCEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeee
Q 046773 210 LDGDIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWR 288 (453)
Q Consensus 210 ~D~tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~ 288 (453)
+|.+|.||...+.- +.++.+|...|- .++-..++. |.|||.|+|+|||-. +++- .
T Consensus 79 ~D~~i~v~~~~~~~P~~~LkgH~snVC----~ls~~~~~~----~iSgSWD~TakvW~~--~~l~--------------~ 134 (745)
T KOG0301|consen 79 MDTTIIVFKLSQAEPLYTLKGHKSNVC----SLSIGEDGT----LISGSWDSTAKVWRI--GELV--------------Y 134 (745)
T ss_pred ccceEEEEecCCCCchhhhhcccccee----eeecCCcCc----eEecccccceEEecc--hhhh--------------c
Confidence 99999999987622 577888876553 344333433 789999999999975 3321 2
Q ss_pred eeeeeccceeEEEEcCC-ceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEe-cCCEEEEEeCCCccccCcceEE
Q 046773 289 MLTEFTEFVGRVRVTSH-ESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDV-NAEAYIVVENRELENQNRRLAI 366 (453)
Q Consensus 289 ~l~~h~~~v~~v~~s~~-~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~-~g~~l~s~s~dg~~~~~~~~i~ 366 (453)
.+.+|+..|.+|.+-|. ..+++|.|.+||+|.-. +++.++.||+. .|..+.. +...++|++.|| .|+
T Consensus 135 ~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~~--~~l~tf~gHtD--~VRgL~vl~~~~flScsNDg-------~Ir 203 (745)
T KOG0301|consen 135 SLQGHTASVWAVASLPENTYVTGSADKTIKLWKGG--TLLKTFSGHTD--CVRGLAVLDDSHFLSCSNDG-------SIR 203 (745)
T ss_pred ccCCcchheeeeeecCCCcEEeccCcceeeeccCC--chhhhhccchh--heeeeEEecCCCeEeecCCc-------eEE
Confidence 36789999999986554 45677889999999863 56777777764 4566553 344899999999 999
Q ss_pred EEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEEE--EecCCCEEEEEeC
Q 046773 367 VRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVIA--FVGDDRHVAASCG 443 (453)
Q Consensus 367 Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~a--~s~d~~~lasg~D 443 (453)
.|+. +|+++.++-+|.+-+.++....+++.+++|+. +|+|||+.. +|.+.+.-++-. ||+ +-++|.+++.++|
T Consensus 204 ~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtts-iWsa~~L~NgDIvvg~SD 279 (745)
T KOG0301|consen 204 LWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTS-IWSAKVLLNGDIVVGGSD 279 (745)
T ss_pred EEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccc-eEEEEEeeCCCEEEeccC
Confidence 9999 78999999999888888876667788888887 999999987 888888755556 884 3468877665599
Q ss_pred CcEEEEec
Q 046773 444 TNIHLWDF 451 (453)
Q Consensus 444 ~~IklWDl 451 (453)
|.||||-.
T Consensus 280 G~VrVfT~ 287 (745)
T KOG0301|consen 280 GRVRVFTV 287 (745)
T ss_pred ceEEEEEe
Confidence 99999964
No 53
>PTZ00421 coronin; Provisional
Probab=99.91 E-value=2.6e-22 Score=212.52 Aligned_cols=232 Identities=11% Similarity=0.012 Sum_probs=166.7
Q ss_pred EcCCeEEEEeCCCCEEEEEeec---------CC-----cceEEeeecceecCceEEEEeC-CCceeeEEEEeeCCCeEEE
Q 046773 200 ITDSQLIFATLDGDIHVAVIDD---------VA-----NETRTAHFGSVMDDGVLIDFTG-CSRYWVGLYAGLAGRAFHI 264 (453)
Q Consensus 200 f~g~~LasgS~D~tIkvWd~~~---------~g-----~~~~~~~~~~v~~~~~~v~Fs~-dg~~~~~LaSgS~D~tIrv 264 (453)
+++..+++++.+..+..|+... .| ...+.+|.+.|. .|+|+| ++++ |+|||.|++|+|
T Consensus 30 ~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~----~v~fsP~d~~~---LaSgS~DgtIkI 102 (493)
T PTZ00421 30 WDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPII----DVAFNPFDPQK---LFTASEDGTIMG 102 (493)
T ss_pred CCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEE----EEEEcCCCCCE---EEEEeCCCEEEE
Confidence 4445555555555555665432 12 123566776654 489999 7775 899999999999
Q ss_pred eeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc---eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEE
Q 046773 265 WDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE---SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTS 341 (453)
Q Consensus 265 WD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~---~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~ 341 (453)
||+.++.... +......+|.+|...|.+|+|+|.. +++++.|++|+|||+++++++..+.+|...+...+
T Consensus 103 Wdi~~~~~~~-------~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 103 WGIPEEGLTQ-------NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred EecCCCcccc-------ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 9998753110 0000124678999999999999853 45567789999999999887666667766666667
Q ss_pred EEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCC-eeEEEEeeCCCeEEEEe-----CCeEEEEECCCCe
Q 046773 342 VDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADR-NVNVMGCMNQGYALMCV-----EGVIRVWEVEGGE 415 (453)
Q Consensus 342 ~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~-v~~~~~~~~~~~lls~s-----~~tIrlWD~~tG~ 415 (453)
+++++..+++++.|+ +|+|||..+++.+.++..|... ...+.+++++..+++++ +++|+|||+.+..
T Consensus 176 ~spdG~lLatgs~Dg-------~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 176 WNLDGSLLCTTSKDK-------KLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred EECCCCEEEEecCCC-------EEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 788899999999999 9999999999998888877644 34566777777777653 2899999998754
Q ss_pred -EEEEecccCCceEE--EEecCCCEEEEE--eCCcEEEEecC
Q 046773 416 -YMYSFRERIGEEVI--AFVGDDRHVAAS--CGTNIHLWDFG 452 (453)
Q Consensus 416 -~l~tL~gh~~~~V~--a~s~d~~~lasg--~D~~IklWDl~ 452 (453)
++.++..+....+. .+++|++.|+++ .|++|++||+.
T Consensus 249 ~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~ 290 (493)
T PTZ00421 249 SPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELM 290 (493)
T ss_pred CceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEee
Confidence 45544444333133 567999988766 59999999974
No 54
>PTZ00421 coronin; Provisional
Probab=99.91 E-value=6.1e-22 Score=209.64 Aligned_cols=243 Identities=11% Similarity=0.056 Sum_probs=168.7
Q ss_pred EEEecCCEEEEEeCCCcEEEEECCCCeEEE-------------EecCCCCCccccccceEEEEEEc---CCeEEEEeCCC
Q 046773 149 CLTLSDLYLACGFADGAVRLFDLTTRLHVR-------------TFRPQHSDRLGQFSRAVSGIIIT---DSQLIFATLDG 212 (453)
Q Consensus 149 ~lafs~~~LaSGS~D~TIrlWD~~tg~~~~-------------tl~gh~~~~~~~~s~~V~~i~f~---g~~LasgS~D~ 212 (453)
..++++..+++++.+..+..|+...|..+- .|.||. ..|.+++|+ +..|++||.|+
T Consensus 27 ~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~--------~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 27 TALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQE--------GPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred cccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCC--------CCEEEEEEcCCCCCEEEEEeCCC
Confidence 333445567777777777788766554432 244543 368889886 46899999999
Q ss_pred CEEEEEeecCC--------cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcce
Q 046773 213 DIHVAVIDDVA--------NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTV 284 (453)
Q Consensus 213 tIkvWd~~~~g--------~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v 284 (453)
+|+|||+...+ +..+.+|...|. .|+|+|++.. .|+|||.|++|+|||+++++..
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~----~l~f~P~~~~--iLaSgs~DgtVrIWDl~tg~~~----------- 161 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVG----IVSFHPSAMN--VLASAGADMVVNVWDVERGKAV----------- 161 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEE----EEEeCcCCCC--EEEEEeCCCEEEEEECCCCeEE-----------
Confidence 99999997532 234556665543 4899998642 3899999999999999998743
Q ss_pred eeeeeeeeeccceeEEEEcCCce--EEEEcCCcEEEEECCCCceEEEEeeccCCeE-EEEEEecCCEEEEEeCCCccccC
Q 046773 285 MGWRMLTEFTEFVGRVRVTSHES--AVACTSSRVITFDLRNQGMVLGERGYGRGLY-VTSVDVNAEAYIVVENRELENQN 361 (453)
Q Consensus 285 ~~w~~l~~h~~~v~~v~~s~~~~--~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~-v~~~~~~g~~l~s~s~dg~~~~~ 361 (453)
..+.+|.+.|.+++|+|++. +++|.|++|||||+++++++....+|..... ...+.++++.+++++.++ ..
T Consensus 162 ---~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~---s~ 235 (493)
T PTZ00421 162 ---EVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSK---SQ 235 (493)
T ss_pred ---EEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCC---CC
Confidence 34667889999999998763 4456689999999999887766666654322 234556667777654321 01
Q ss_pred cceEEEEEcCCCe-eEEEEEecC-CCeeEEEEeeCCCeEEEEe-C-CeEEEEECCCCeEEEEecc
Q 046773 362 RRLAIVRRVDTFE-EVCRFSLRA-DRNVNVMGCMNQGYALMCV-E-GVIRVWEVEGGEYMYSFRE 422 (453)
Q Consensus 362 ~~~i~Iw~~~tg~-~v~~l~~~~-~~v~~~~~~~~~~~lls~s-~-~tIrlWD~~tG~~l~tL~g 422 (453)
|++++|||+.+.. ++.....+. ..+....+++++..+++++ + ++||+||+.+++.+..+..
T Consensus 236 Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~ 300 (493)
T PTZ00421 236 QRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSY 300 (493)
T ss_pred CCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeec
Confidence 3399999998653 444333332 2233345667788777665 3 9999999999998877644
No 55
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=7.4e-23 Score=216.87 Aligned_cols=218 Identities=14% Similarity=0.128 Sum_probs=163.2
Q ss_pred CCCCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCC--eEEEEeCC
Q 046773 136 PSDVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDS--QLIFATLD 211 (453)
Q Consensus 136 ~~gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~--~LasgS~D 211 (453)
+.+|+-| |..+.|-+ .+.+||++|-+||||+..+.+|+.||.||-. .|+.+.|.-. -|+|+|.|
T Consensus 47 FdeHdGp----VRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlD--------YVRt~~FHheyPWIlSASDD 114 (1202)
T KOG0292|consen 47 FDEHDGP----VRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLD--------YVRTVFFHHEYPWILSASDD 114 (1202)
T ss_pred hhccCCc----cceeeecCCCCeEEecCCccEEEEEecccceehhhhccccc--------eeEEeeccCCCceEEEccCC
Confidence 3489866 88999976 6999999999999999999999999999764 7888999876 49999999
Q ss_pred CCEEEEEeecC-CcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc---EEe--------ccc--
Q 046773 212 GDIHVAVIDDV-ANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE---VFV--------GGD-- 277 (453)
Q Consensus 212 ~tIkvWd~~~~-g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~---~~~--------g~~-- 277 (453)
.||+||||.+. .+.++++|...|+ .-.|+|.... ++|+|-|.||||||+..=+ .-. |+.
T Consensus 115 QTIrIWNwqsr~~iavltGHnHYVM----cAqFhptEDl---IVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~ 187 (1202)
T KOG0292|consen 115 QTIRIWNWQSRKCIAVLTGHNHYVM----CAQFHPTEDL---IVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGN 187 (1202)
T ss_pred CeEEEEeccCCceEEEEecCceEEE----eeccCCccce---EEEecccceEEEEeecchhccCCCCCCchhhhhccccc
Confidence 99999999882 2888999988776 3579997664 7899999999999986422 111 111
Q ss_pred --ccC-CcceeeeeeeeeeccceeEEEEcCCc-eEEE-EcCCcEEEEECCCCceEEE--EeeccCCeEEEEEEecCCEEE
Q 046773 278 --LTD-HNTVMGWRMLTEFTEFVGRVRVTSHE-SAVA-CTSSRVITFDLRNQGMVLG--ERGYGRGLYVTSVDVNAEAYI 350 (453)
Q Consensus 278 --l~~-~~~v~~w~~l~~h~~~v~~v~~s~~~-~~va-s~d~tIrlWDl~t~~~~~~--~~g~~~~~~v~~~~~~g~~l~ 350 (453)
|.+ +..+. =+.|.||.--||-++|+|.- ++++ ++|..||+|-+..-+.--. ..||...+...-|+|..+.++
T Consensus 188 ~dLfg~~DaVV-K~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIl 266 (1202)
T KOG0292|consen 188 SDLFGQTDAVV-KHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLIL 266 (1202)
T ss_pred hhhcCCcCeee-eeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeE
Confidence 111 11111 15789999889999999954 3444 4557899999864322111 256654433333555558899
Q ss_pred EEeCCCccccCcceEEEEEcCCCeeEEEEE
Q 046773 351 VVENRELENQNRRLAIVRRVDTFEEVCRFS 380 (453)
Q Consensus 351 s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~ 380 (453)
|.|.|+ +|||||.+..+++++|.
T Consensus 267 SnsEDk-------sirVwDm~kRt~v~tfr 289 (1202)
T KOG0292|consen 267 SNSEDK-------SIRVWDMTKRTSVQTFR 289 (1202)
T ss_pred ecCCCc-------cEEEEecccccceeeee
Confidence 988888 99999999888888774
No 56
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.90 E-value=4.2e-21 Score=194.62 Aligned_cols=286 Identities=13% Similarity=0.146 Sum_probs=201.4
Q ss_pred eeEEeeCCCCCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEec---CCCCCccccccceEEEEEE--c
Q 046773 129 HFNLYFDPSDVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFR---PQHSDRLGQFSRAVSGIII--T 201 (453)
Q Consensus 129 ~~~~~~~~~gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~---gh~~~~~~~~s~~V~~i~f--~ 201 (453)
||.+......|. -.|+|+-|+| .+.||.+.|++|-|+|=.||+.+..|. +|.+ .|-+|++ |
T Consensus 179 PFKFk~s~r~Hs----kFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkG--------sIfalsWsPD 246 (603)
T KOG0318|consen 179 PFKFKSSFREHS----KFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKG--------SIFALSWSPD 246 (603)
T ss_pred Ceeeeecccccc----cceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccc--------cEEEEEECCC
Confidence 344443333455 3599999987 599999999999999999999999998 5443 6777876 5
Q ss_pred CCeEEEEeCCCCEEEEEeecCC-cceEE---------------------eeeccee-----------------c-CceEE
Q 046773 202 DSQLIFATLDGDIHVAVIDDVA-NETRT---------------------AHFGSVM-----------------D-DGVLI 241 (453)
Q Consensus 202 g~~LasgS~D~tIkvWd~~~~g-~~~~~---------------------~~~~~v~-----------------~-~~~~v 241 (453)
+.+++|+|.|+|+||||+.+.- ++++. +-.+... + .-..+
T Consensus 247 s~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaL 326 (603)
T KOG0318|consen 247 STQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITAL 326 (603)
T ss_pred CceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEE
Confidence 6789999999999999997611 11110 0000000 0 00147
Q ss_pred EEeCCCceeeEEEEeeCCCeEEEeeCCCCcE--EecccccCCcceeeeeeeeeeccceeEEEEcC-CceEEEEcCCcEEE
Q 046773 242 DFTGCSRYWVGLYAGLAGRAFHIWDRQAEEV--FVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTS-HESAVACTSSRVIT 318 (453)
Q Consensus 242 ~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~--~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~-~~~~vas~d~tIrl 318 (453)
+.+||+++ |+|||.|+.|.=||..+|.. +.| ++|+..|.+++.+. +.+++.+.|+++|+
T Consensus 327 tv~~d~~~---i~SgsyDG~I~~W~~~~g~~~~~~g---------------~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~ 388 (603)
T KOG0318|consen 327 TVSPDGKT---IYSGSYDGHINSWDSGSGTSDRLAG---------------KGHTNQIKGMAASESGELFTIGWDDTLRV 388 (603)
T ss_pred EEcCCCCE---EEeeccCceEEEEecCCcccccccc---------------ccccceEEEEeecCCCcEEEEecCCeEEE
Confidence 88999976 89999999999999999883 211 35667777777765 55666677888888
Q ss_pred EECCCCceEEEE-------------------------------eecc--------CCeEEEEEEecCCEEEEEeCCCccc
Q 046773 319 FDLRNQGMVLGE-------------------------------RGYG--------RGLYVTSVDVNAEAYIVVENRELEN 359 (453)
Q Consensus 319 WDl~t~~~~~~~-------------------------------~g~~--------~~~~v~~~~~~g~~l~s~s~dg~~~ 359 (453)
-++..+++-... ..+. -...+.+++|+++..+.+..|+
T Consensus 389 ~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dg--- 465 (603)
T KOG0318|consen 389 ISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDG--- 465 (603)
T ss_pred EecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccc---
Confidence 766433211100 0000 0112245677788888888888
Q ss_pred cCcceEEEEEcCCCeeEE--EEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecc-cCCceEE--EEec
Q 046773 360 QNRRLAIVRRVDTFEEVC--RFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRE-RIGEEVI--AFVG 433 (453)
Q Consensus 360 ~~~~~i~Iw~~~tg~~v~--~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~g-h~~~~V~--a~s~ 433 (453)
.++|+.+.-++... .+..|...+..+.++||+.|++++.. +.|-+||+++.+.....-+ |+.. |+ +.+|
T Consensus 466 ----kvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtak-I~~~aWsP 540 (603)
T KOG0318|consen 466 ----KVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAK-INCVAWSP 540 (603)
T ss_pred ----eEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeee-EEEEEeCC
Confidence 88999887654222 23456667889999999999887766 9999999999877332223 7777 87 5679
Q ss_pred CCCEEEEE-eCCcEEEEecC
Q 046773 434 DDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 434 d~~~lasg-~D~~IklWDl~ 452 (453)
+.++||+| -|.+|.||++.
T Consensus 541 ~n~~vATGSlDt~Viiysv~ 560 (603)
T KOG0318|consen 541 NNKLVATGSLDTNVIIYSVK 560 (603)
T ss_pred CceEEEeccccceEEEEEcc
Confidence 99999999 99999999874
No 57
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.90 E-value=2.7e-23 Score=205.45 Aligned_cols=266 Identities=15% Similarity=0.190 Sum_probs=195.1
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCe--EEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEee
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRL--HVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVID 220 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~--~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~ 220 (453)
|..+-|-+ +.|+||+.|..|++|++...+ .+.+|.|-.+ .+.++.|+ +..++++|.|+.+++||++
T Consensus 178 v~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g--------~it~~d~d~~~~~~iAas~d~~~r~Wnvd 249 (459)
T KOG0288|consen 178 VHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLG--------NITSIDFDSDNKHVIAASNDKNLRLWNVD 249 (459)
T ss_pred cceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCC--------CcceeeecCCCceEEeecCCCceeeeecc
Confidence 55666643 689999999999999998877 4666665222 46778886 5678889999999999998
Q ss_pred cCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeE
Q 046773 221 DVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGR 299 (453)
Q Consensus 221 ~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~ 299 (453)
..- .+++++|++.|. .+.|.-.... ++|||.|.|||+||+..+.|... + |. .+.++.
T Consensus 250 ~~r~~~TLsGHtdkVt----~ak~~~~~~~---vVsgs~DRtiK~WDl~k~~C~kt--------~-----l~--~S~cnD 307 (459)
T KOG0288|consen 250 SLRLRHTLSGHTDKVT----AAKFKLSHSR---VVSGSADRTIKLWDLQKAYCSKT--------V-----LP--GSQCND 307 (459)
T ss_pred chhhhhhhccccccee----eehhhccccc---eeeccccchhhhhhhhhhheecc--------c-----cc--cccccc
Confidence 832 789999988764 2455433221 67999999999999998775420 0 11 134555
Q ss_pred EEEcCCceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEE
Q 046773 300 VRVTSHESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRF 379 (453)
Q Consensus 300 v~~s~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l 379 (453)
|..++...+++-.|.+||+||+++..+......++ .+....+++++..+.+.+.|. ++++.|..+.+-.+++
T Consensus 308 I~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDd-------tl~viDlRt~eI~~~~ 379 (459)
T KOG0288|consen 308 IVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDD-------TLKVIDLRTKEIRQTF 379 (459)
T ss_pred eEecceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCC-------ceeeeecccccEEEEe
Confidence 55554334444458899999999987766544433 233334557777788778777 9999999988766666
Q ss_pred EecC----CCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccC-CceEE--EEecCCCEEEEE-eCCcEEEEe
Q 046773 380 SLRA----DRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERI-GEEVI--AFVGDDRHVAAS-CGTNIHLWD 450 (453)
Q Consensus 380 ~~~~----~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~-~~~V~--a~s~d~~~lasg-~D~~IklWD 450 (453)
+... +....++|+|++.|+++++. +.|+||++.+|+|-..|...+ ...|+ ++.|.|..|+++ .++.+.||.
T Consensus 380 sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 380 SAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred eccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 4432 22567899999999999887 999999999999998886543 32377 556899999988 999999993
No 58
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.5e-22 Score=194.63 Aligned_cols=293 Identities=15% Similarity=0.180 Sum_probs=187.3
Q ss_pred hhhcccccCceeeEEeeCCCCCCCCCCeEEEEEEec--CCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceE
Q 046773 118 TAQNFRTRRYTHFNLYFDPSDVDNPDGLTCRCLTLS--DLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAV 195 (453)
Q Consensus 118 ~~~nw~~g~~~~~~~~~~~~gh~~~d~v~v~~lafs--~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V 195 (453)
+..-|+.+..+.. +..+..||. |+|| -++-+ ...+.|+|.|.|.+||.+++|+|+.++.||.+ +|
T Consensus 127 ivssFk~~t~~~~-lvre~~GHk--DGiW--~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~G--------SV 193 (481)
T KOG0300|consen 127 IVSSFKDGTVKFR-LVRELEGHK--DGIW--HVAADSTQPICGTASADHTARIWSLESGACLATYTGHTG--------SV 193 (481)
T ss_pred heeeecCCceeEe-ehhhhcccc--ccee--eehhhcCCcceeecccccceeEEeeccccceeeeccccc--------ce
Confidence 3446777775443 333456999 6755 55554 46999999999999999999999999999875 78
Q ss_pred EEEEEc--CCeEEEEeCCCCEEEEEe----ecCCcceEEeeec----------------ceecCce-------------E
Q 046773 196 SGIIIT--DSQLIFATLDGDIHVAVI----DDVANETRTAHFG----------------SVMDDGV-------------L 240 (453)
Q Consensus 196 ~~i~f~--g~~LasgS~D~tIkvWd~----~~~g~~~~~~~~~----------------~v~~~~~-------------~ 240 (453)
.+|.|. +..++++|-|+|.+||.. +.|-...-..|.+ ....|+. .
T Consensus 194 Nsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~ 273 (481)
T KOG0300|consen 194 NSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRA 273 (481)
T ss_pred eeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeecccc
Confidence 999986 567899999999999962 2210000000100 0000100 0
Q ss_pred E----EEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc-eEEE-EcCC
Q 046773 241 I----DFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE-SAVA-CTSS 314 (453)
Q Consensus 241 v----~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~-~~va-s~d~ 314 (453)
+ .+-.-|+. ++++|.|.|..|||+++|+.+ +.|+||....+.+.-+|.. +++. |-|.
T Consensus 274 vV~a~dWL~gg~Q---~vTaSWDRTAnlwDVEtge~v--------------~~LtGHd~ELtHcstHptQrLVvTsSrDt 336 (481)
T KOG0300|consen 274 VVSACDWLAGGQQ---MVTASWDRTANLWDVETGEVV--------------NILTGHDSELTHCSTHPTQRLVVTSSRDT 336 (481)
T ss_pred ceEehhhhcCcce---eeeeeccccceeeeeccCcee--------------ccccCcchhccccccCCcceEEEEeccCc
Confidence 0 01111333 678999999999999999954 4466777667767667654 3333 4568
Q ss_pred cEEEEECCCCceEEEE-eeccCCeEEEEEEec-CCEEEEEeCCCccccCcceEEEEEcCCC-eeEEEEEecCCCeeEEEE
Q 046773 315 RVITFDLRNQGMVLGE-RGYGRGLYVTSVDVN-AEAYIVVENRELENQNRRLAIVRRVDTF-EEVCRFSLRADRNVNVMG 391 (453)
Q Consensus 315 tIrlWDl~t~~~~~~~-~g~~~~~~v~~~~~~-g~~l~s~s~dg~~~~~~~~i~Iw~~~tg-~~v~~l~~~~~~v~~~~~ 391 (453)
|.||||.+. .+... +.++|...|++..|. ++.++++|.|. ++||||+.+- .++.++... +.+..++.
T Consensus 337 TFRLWDFRe--aI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDr-------TvKvWdLrNMRsplATIRtd-S~~NRvav 406 (481)
T KOG0300|consen 337 TFRLWDFRE--AIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDR-------TVKVWDLRNMRSPLATIRTD-SPANRVAV 406 (481)
T ss_pred eeEeccchh--hcceeeeecccccceeEEEEecCCceeecCCCc-------eEEEeeeccccCcceeeecC-CccceeEe
Confidence 899999983 33332 344555566666554 56788988888 9999998763 345554432 22445555
Q ss_pred eeCCCeEEEEeC-CeEEEEECCCCeEEEEec-----ccCCceEEEEe-----cCCCEEEEEeCCcEEEEecC
Q 046773 392 CMNQGYALMCVE-GVIRVWEVEGGEYMYSFR-----ERIGEEVIAFV-----GDDRHVAASCGTNIHLWDFG 452 (453)
Q Consensus 392 ~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~-----gh~~~~V~a~s-----~d~~~lasg~D~~IklWDl~ 452 (453)
|.....++.--+ ..|||+|+. |..+..|+ ||..- |.+.+ |--..+.+|-|.++.=|.+.
T Consensus 407 s~g~~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrRM-V~c~AW~eehp~cnLftcGFDR~v~gW~in 476 (481)
T KOG0300|consen 407 SKGHPIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRRM-VTCCAWLEEHPACNLFTCGFDRMVAGWKIN 476 (481)
T ss_pred ecCCceEEeccCCceEEEEecC-CCccccCCccccccccee-eeeeeccccCcccccccccccceeeeeEec
Confidence 543333333345 899999997 44444443 56554 76443 22223344589999999764
No 59
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.90 E-value=3.6e-22 Score=188.34 Aligned_cols=280 Identities=12% Similarity=0.074 Sum_probs=199.0
Q ss_pred CCCCCCCeEEEEEEec--CCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCC
Q 046773 138 DVDNPDGLTCRCLTLS--DLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGD 213 (453)
Q Consensus 138 gh~~~d~v~v~~lafs--~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~t 213 (453)
||+-| ++-+.|+ +++|.|++.|.++.||-...|+.+-|+.||.+ +|.++..| .+.|+|||.|.+
T Consensus 8 GHERp----lTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtG--------avW~~Did~~s~~liTGSAD~t 75 (327)
T KOG0643|consen 8 GHERP----LTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTG--------AVWCCDIDWDSKHLITGSADQT 75 (327)
T ss_pred cCccc----cceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCc--------eEEEEEecCCcceeeeccccce
Confidence 89977 7888887 68999999999999999999999999999876 78888776 678999999999
Q ss_pred EEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEe----eCCCeEEEeeCCCCc-EEecccccCCcceeeee
Q 046773 214 IHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAG----LAGRAFHIWDRQAEE-VFVGGDLTDHNTVMGWR 288 (453)
Q Consensus 214 IkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSg----S~D~tIrvWD~~tg~-~~~g~~l~~~~~v~~w~ 288 (453)
+|+||+.+ |.+..+.-.+..+ ..+.|+++|.++ |++- +.-+.|.+.|++.-. .... +. ...
T Consensus 76 ~kLWDv~t-Gk~la~~k~~~~V---k~~~F~~~gn~~--l~~tD~~mg~~~~v~~fdi~~~~~~~~s------~e--p~~ 141 (327)
T KOG0643|consen 76 AKLWDVET-GKQLATWKTNSPV---KRVDFSFGGNLI--LASTDKQMGYTCFVSVFDIRDDSSDIDS------EE--PYL 141 (327)
T ss_pred eEEEEcCC-CcEEEEeecCCee---EEEeeccCCcEE--EEEehhhcCcceEEEEEEccCChhhhcc------cC--ceE
Confidence 99999999 7333332222211 248999999863 3431 223678999988422 1000 00 001
Q ss_pred eeeeeccceeEEEEcCC-ceEEEE-cCCcEEEEECCCCceEEEE-eeccCCeEEEEEEecCCEEEEEeCCCccccCcceE
Q 046773 289 MLTEFTEFVGRVRVTSH-ESAVAC-TSSRVITFDLRNQGMVLGE-RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLA 365 (453)
Q Consensus 289 ~l~~h~~~v~~v~~s~~-~~~vas-~d~tIrlWDl~t~~~~~~~-~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i 365 (453)
.+..+.+.+..+-.+|- ..++++ .|+.|..||+++|..+..- ..|.+.+.-.+++++....+++|-|. +.
T Consensus 142 kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dt-------ta 214 (327)
T KOG0643|consen 142 KIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDT-------TA 214 (327)
T ss_pred EecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCc-------cc
Confidence 12233344555555543 345555 4689999999998655442 56776666667888888999999999 99
Q ss_pred EEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC---CeE------------EEEECCCCeEEEEecccCCceEE-
Q 046773 366 IVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE---GVI------------RVWEVEGGEYMYSFRERIGEEVI- 429 (453)
Q Consensus 366 ~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~---~tI------------rlWD~~tG~~l~tL~gh~~~~V~- 429 (453)
++||..+-+++.++.-.. -|.+.+.+|--.+++.+++ ..| |.+++..-+.+..+.||-+. |+
T Consensus 215 kl~D~~tl~v~Kty~te~-PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGP-INs 292 (327)
T KOG0643|consen 215 KLVDVRTLEVLKTYTTER-PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGP-INS 292 (327)
T ss_pred eeeeccceeeEEEeeecc-cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccC-cce
Confidence 999999988877764321 2667777876666665544 222 33333334556778899999 98
Q ss_pred -EEecCCCEEEEE-eCCcEEEEecC
Q 046773 430 -AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 430 -a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
+|+|||+--+|| +||.|||--|.
T Consensus 293 vAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 293 VAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred eEECCCCcccccCCCCceEEEEEec
Confidence 788999999999 99999997553
No 60
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.90 E-value=1.9e-22 Score=193.47 Aligned_cols=276 Identities=15% Similarity=0.200 Sum_probs=200.7
Q ss_pred CCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECC------------CC------eEEEEecCCCCCccccccceEEE
Q 046773 138 DVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLT------------TR------LHVRTFRPQHSDRLGQFSRAVSG 197 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~------------tg------~~~~tl~gh~~~~~~~~s~~V~~ 197 (453)
-|..| |.|-+||+ .++||||.|..|||.|++ .| -.+|||.-|.. .|..
T Consensus 110 ~HK~~----cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~d--------evn~ 177 (430)
T KOG0640|consen 110 SHKSP----CRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVD--------EVND 177 (430)
T ss_pred ecccc----eeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccC--------cccc
Confidence 47655 89999986 599999999999999987 11 13677766543 5888
Q ss_pred EEEcC--CeEEEEeCCCCEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEe
Q 046773 198 IIITD--SQLIFATLDGDIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFV 274 (453)
Q Consensus 198 i~f~g--~~LasgS~D~tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~ 274 (453)
+.|.+ .+|+|||.|+|||+.|...+. ...++....- ..-..+.|+|.|.+ |+.|..-.++||+|++|-++|.
T Consensus 178 l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~--~~vrsiSfHPsGef---llvgTdHp~~rlYdv~T~Qcfv 252 (430)
T KOG0640|consen 178 LDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDT--EPVRSISFHPSGEF---LLVGTDHPTLRLYDVNTYQCFV 252 (430)
T ss_pred eeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhcc--ceeeeEeecCCCce---EEEecCCCceeEEeccceeEee
Confidence 98885 589999999999999987522 1111111100 00125899999998 6678888899999999999885
Q ss_pred cccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEE-eeccCCeEEEE--EEecCCEE
Q 046773 275 GGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGE-RGYGRGLYVTS--VDVNAEAY 349 (453)
Q Consensus 275 g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~-~g~~~~~~v~~--~~~~g~~l 349 (453)
-.. .-.+|++.|++|++++.+ .+.+|-|+.|||||=-+++|+.+. ..|+... |.+ |.-++..+
T Consensus 253 san-----------Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gse-vcSa~Ftkn~kyi 320 (430)
T KOG0640|consen 253 SAN-----------PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSE-VCSAVFTKNGKYI 320 (430)
T ss_pred ecC-----------cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCce-eeeEEEccCCeEE
Confidence 321 124789999999999766 466788999999999999998775 5565433 433 66677777
Q ss_pred EEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCC----eeE-EEEeeCCCeEEEEeC--CeEEEEECCCCeEEEEec-
Q 046773 350 IVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADR----NVN-VMGCMNQGYALMCVE--GVIRVWEVEGGEYMYSFR- 421 (453)
Q Consensus 350 ~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~----v~~-~~~~~~~~~lls~s~--~tIrlWD~~tG~~l~tL~- 421 (453)
++.+.|. ++++|.+.|+.++.+.++-+-. .++ .+|.-...|++.-.. +.+--||..++..+..+.
T Consensus 321 LsSG~DS-------~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl 393 (430)
T KOG0640|consen 321 LSSGKDS-------TVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL 393 (430)
T ss_pred eecCCcc-------eeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc
Confidence 7777777 9999999999999888765311 121 233333456554433 677889999987766553
Q ss_pred ccCCceEEEE--ecCCCEEEEE-eCCcEEEEe
Q 046773 422 ERIGEEVIAF--VGDDRHVAAS-CGTNIHLWD 450 (453)
Q Consensus 422 gh~~~~V~a~--s~d~~~lasg-~D~~IklWD 450 (453)
||.+. |..| +|.+.-..++ .|..+|.|-
T Consensus 394 gHn~a-~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 394 GHNGA-VRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred CCCCC-ceEEEeCCCCCceeeecccceeeeee
Confidence 78888 7755 5888777777 999999995
No 61
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.90 E-value=7.4e-21 Score=192.86 Aligned_cols=276 Identities=16% Similarity=0.256 Sum_probs=201.7
Q ss_pred CCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeC--C
Q 046773 138 DVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATL--D 211 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~--D 211 (453)
+|..+ ++-..||| -|||||-.-++|||||...-+.+ |+. .+.+++..|..|+++ +.+|+.-+. +
T Consensus 57 EH~~~----vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hi--LKn----ef~v~aG~I~Di~Wd~ds~RI~avGEGre 126 (603)
T KOG0318|consen 57 EHAHQ----VTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHI--LKN----EFQVLAGPIKDISWDFDSKRIAAVGEGRE 126 (603)
T ss_pred cccce----eEEEEeCCCceEEeecCCcCcEEEEeccCccee--eee----eeeecccccccceeCCCCcEEEEEecCcc
Confidence 56533 45555665 69999999999999998664433 221 123344567788865 556554333 3
Q ss_pred CCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeee
Q 046773 212 GDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRM 289 (453)
Q Consensus 212 ~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~ 289 (453)
+-.++.-+++ | .--+.+|.-.+. +++|-|.-.+ -+++||.|++|-+++-.-- .|. .+
T Consensus 127 rfg~~F~~DS-G~SvGei~GhSr~in----s~~~KpsRPf--Ri~T~sdDn~v~ffeGPPF-KFk-------------~s 185 (603)
T KOG0318|consen 127 RFGHVFLWDS-GNSVGEITGHSRRIN----SVDFKPSRPF--RIATGSDDNTVAFFEGPPF-KFK-------------SS 185 (603)
T ss_pred ceeEEEEecC-CCccceeeccceeEe----eeeccCCCce--EEEeccCCCeEEEeeCCCe-eee-------------ec
Confidence 3334433333 3 234555655443 4788777554 3889999999999874222 221 35
Q ss_pred eeeeccceeEEEEcCCce--EEEEcCCcEEEEECCCCceEEEE---eeccCCeEEEEEEecCCEEEEEeCCCccccCcce
Q 046773 290 LTEFTEFVGRVRVTSHES--AVACTSSRVITFDLRNQGMVLGE---RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRL 364 (453)
Q Consensus 290 l~~h~~~v~~v~~s~~~~--~vas~d~tIrlWDl~t~~~~~~~---~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~ 364 (453)
++.|+.+|++|+|+|++. +++++|++|.|+|=.+|+.+..+ .+|...++..+.+||+.+++++|.|. +
T Consensus 186 ~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDk-------t 258 (603)
T KOG0318|consen 186 FREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADK-------T 258 (603)
T ss_pred ccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCc-------e
Confidence 678999999999999884 55678999999999999876655 36666666666778899999999999 9
Q ss_pred EEEEEcCCCeeEEEEEecCCCeeEEEEee-CCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEEE--EecCCCEEEE
Q 046773 365 AIVRRVDTFEEVCRFSLRADRNVNVMGCM-NQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVIA--FVGDDRHVAA 440 (453)
Q Consensus 365 i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~-~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~a--~s~d~~~las 440 (453)
+||||+.+.++++++.....--...++|. +...|++.+. |+|.+.+...+..++++.||... |++ ++||+++|.|
T Consensus 259 ~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~-ITaLtv~~d~~~i~S 337 (603)
T KOG0318|consen 259 IKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKS-ITALTVSPDGKTIYS 337 (603)
T ss_pred EEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccc-eeEEEEcCCCCEEEe
Confidence 99999999999999876553222344443 4567777777 99999999999999999999999 885 5699999999
Q ss_pred E-eCCcEEEEecC
Q 046773 441 S-CGTNIHLWDFG 452 (453)
Q Consensus 441 g-~D~~IklWDl~ 452 (453)
| +||.|.=||++
T Consensus 338 gsyDG~I~~W~~~ 350 (603)
T KOG0318|consen 338 GSYDGHINSWDSG 350 (603)
T ss_pred eccCceEEEEecC
Confidence 9 99999999986
No 62
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=4.4e-22 Score=186.69 Aligned_cols=268 Identities=13% Similarity=0.153 Sum_probs=192.6
Q ss_pred EEEEecC---CEEEEE--e-----CCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc---CCeEEEEeCCCCE
Q 046773 148 RCLTLSD---LYLACG--F-----ADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT---DSQLIFATLDGDI 214 (453)
Q Consensus 148 ~~lafs~---~~LaSG--S-----~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~---g~~LasgS~D~tI 214 (453)
++++||| ++||.+ . ..|++-|=|+..++-++.+..-. ....+-.++.+ .+.+++++-||++
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d------~~D~LfdV~Wse~~e~~~~~a~GDGSL 85 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD------TEDGLFDVAWSENHENQVIAASGDGSL 85 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeee------cccceeEeeecCCCcceEEEEecCceE
Confidence 7899998 454443 2 34788888886555454443111 11244556665 4689999999999
Q ss_pred EEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeee
Q 046773 215 HVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTE 292 (453)
Q Consensus 215 kvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~ 292 (453)
|+||..-+. ++.++.|...|. +|+.++.-+. .+.++|.|+||||||..-++.+ .|.+|
T Consensus 86 rl~d~~~~s~Pi~~~kEH~~EV~----Svdwn~~~r~--~~ltsSWD~TiKLW~~~r~~Sv--------------~Tf~g 145 (311)
T KOG0277|consen 86 RLFDLTMPSKPIHKFKEHKREVY----SVDWNTVRRR--IFLTSSWDGTIKLWDPNRPNSV--------------QTFNG 145 (311)
T ss_pred EEeccCCCCcchhHHHhhhhheE----Eeccccccce--eEEeeccCCceEeecCCCCcce--------------EeecC
Confidence 999965432 667777876664 4666666554 3556699999999999777632 35678
Q ss_pred eccceeEEEEcCC---ceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEE---ecCCEEEEEeCCCccccCcceEE
Q 046773 293 FTEFVGRVRVTSH---ESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVD---VNAEAYIVVENRELENQNRRLAI 366 (453)
Q Consensus 293 h~~~v~~v~~s~~---~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~---~~g~~l~s~s~dg~~~~~~~~i~ 366 (453)
|.+.|..++|+|. -.+++|+|++.||||++..+..+....|. ..+.+.+ ++.+.+++++.|+ .||
T Consensus 146 h~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~--~Eil~cdw~ky~~~vl~Tg~vd~-------~vr 216 (311)
T KOG0277|consen 146 HNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHN--SEILCCDWSKYNHNVLATGGVDN-------LVR 216 (311)
T ss_pred CccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEecc--ceeEeecccccCCcEEEecCCCc-------eEE
Confidence 8899999999864 35667889999999999765544444443 3455654 4467888888888 999
Q ss_pred EEEcCC-CeeEEEEEecCCCeeEEEEeeCCCeEEEEeC--CeEEEEECCCC-eEEEEecccCCceEE--EEe-cCCCEEE
Q 046773 367 VRRVDT-FEEVCRFSLRADRNVNVMGCMNQGYALMCVE--GVIRVWEVEGG-EYMYSFRERIGEEVI--AFV-GDDRHVA 439 (453)
Q Consensus 367 Iw~~~t-g~~v~~l~~~~~~v~~~~~~~~~~~lls~s~--~tIrlWD~~tG-~~l~tL~gh~~~~V~--a~s-~d~~~la 439 (453)
+||+.. ..++.++.+|.-.||.+.++|....++++++ -|+||||.+.+ .++.+..-|++- |. .++ .++.+||
T Consensus 217 ~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEF-v~g~Dws~~~~~~vA 295 (311)
T KOG0277|consen 217 GWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEF-VCGLDWSLFDPGQVA 295 (311)
T ss_pred EEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceE-EeccccccccCceee
Confidence 999875 3567788888888999999997766665554 89999999965 455666667666 65 344 3778999
Q ss_pred EE-eCCcEEEEec
Q 046773 440 AS-CGTNIHLWDF 451 (453)
Q Consensus 440 sg-~D~~IklWDl 451 (453)
+. .|..++||+-
T Consensus 296 s~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 296 STGWDELLYVWNP 308 (311)
T ss_pred ecccccceeeecc
Confidence 87 9999999983
No 63
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.89 E-value=4.3e-23 Score=207.39 Aligned_cols=239 Identities=13% Similarity=0.147 Sum_probs=173.8
Q ss_pred EEEEecCCCCCccccccceEEEEEE---cCCeEEEEeCCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCcee
Q 046773 176 HVRTFRPQHSDRLGQFSRAVSGIII---TDSQLIFATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYW 250 (453)
Q Consensus 176 ~~~tl~gh~~~~~~~~s~~V~~i~f---~g~~LasgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~ 250 (453)
.++++.||.. .|++|.| .+.+|+|+++|+.|+||++...+ ++++.+|...|. .+.|+++|+.
T Consensus 206 ~~~~~~gH~k--------gvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vr----d~~~s~~g~~- 272 (503)
T KOG0282|consen 206 LSHNLSGHTK--------GVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVR----DASFNNCGTS- 272 (503)
T ss_pred heeeccCCcc--------ccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhh----hhhccccCCe-
Confidence 4678888775 4677764 46789999999999999987633 788888876654 3799999986
Q ss_pred eEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeec-cceeEEEEcCCc--e-EEEEcCCcEEEEECCCCce
Q 046773 251 VGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFT-EFVGRVRVTSHE--S-AVACTSSRVITFDLRNQGM 326 (453)
Q Consensus 251 ~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~-~~v~~v~~s~~~--~-~vas~d~tIrlWDl~t~~~ 326 (453)
+.|+|.|++||+||++||++..- -|+ ..+++|.|.|+. + +++..|+.|+.||+++++.
T Consensus 273 --fLS~sfD~~lKlwDtETG~~~~~----------------f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv 334 (503)
T KOG0282|consen 273 --FLSASFDRFLKLWDTETGQVLSR----------------FHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV 334 (503)
T ss_pred --eeeeecceeeeeeccccceEEEE----------------EecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH
Confidence 67999999999999999995421 122 346789998765 4 4555689999999999875
Q ss_pred EEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecC-CCeeEEEEeeCCCeEEEEeC-C
Q 046773 327 VLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRA-DRNVNVMGCMNQGYALMCVE-G 404 (453)
Q Consensus 327 ~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~-~~v~~~~~~~~~~~lls~s~-~ 404 (453)
++...-|-..+.-..|-+.|.+.++.|.|+ +++||++.++..+....... .....+..+|++.+++.=+- +
T Consensus 335 vqeYd~hLg~i~~i~F~~~g~rFissSDdk-------s~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN 407 (503)
T KOG0282|consen 335 VQEYDRHLGAILDITFVDEGRRFISSSDDK-------SVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDN 407 (503)
T ss_pred HHHHHhhhhheeeeEEccCCceEeeeccCc-------cEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCc
Confidence 433233444445556777788999999999 99999999886554332211 12445666778777664443 7
Q ss_pred eEEEEECCCC---eEEEEecccC--CceEE-EEecCCCEEEEE-eCCcEEEEecC
Q 046773 405 VIRVWEVEGG---EYMYSFRERI--GEEVI-AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 405 tIrlWD~~tG---~~l~tL~gh~--~~~V~-a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
-|-|..+.-- ..-..++||. |..+. .|||||++|+|| .||.+.+||..
T Consensus 408 ~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwk 462 (503)
T KOG0282|consen 408 YIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWK 462 (503)
T ss_pred eEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeech
Confidence 7877775432 1123567884 44354 799999999999 99999999964
No 64
>PTZ00420 coronin; Provisional
Probab=99.89 E-value=6.9e-21 Score=203.41 Aligned_cols=222 Identities=12% Similarity=0.126 Sum_probs=156.8
Q ss_pred eCCCCEEEEEeecC-CcceEEeeecceecCceEEEEeCC-CceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceee
Q 046773 209 TLDGDIHVAVIDDV-ANETRTAHFGSVMDDGVLIDFTGC-SRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMG 286 (453)
Q Consensus 209 S~D~tIkvWd~~~~-g~~~~~~~~~~v~~~~~~v~Fs~d-g~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~ 286 (453)
+.++.|++|+.... -+..+.+|.+.|. .++|+|+ +.+ |||||.|++|+|||+.++.... ..+.. .
T Consensus 51 G~~gvI~L~~~~r~~~v~~L~gH~~~V~----~lafsP~~~~l---LASgS~DgtIrIWDi~t~~~~~-~~i~~-----p 117 (568)
T PTZ00420 51 GLIGAIRLENQMRKPPVIKLKGHTSSIL----DLQFNPCFSEI---LASGSEDLTIRVWEIPHNDESV-KEIKD-----P 117 (568)
T ss_pred CceeEEEeeecCCCceEEEEcCCCCCEE----EEEEcCCCCCE---EEEEeCCCeEEEEECCCCCccc-ccccc-----c
Confidence 34456678876441 1345666776654 4899997 564 8999999999999998753100 00000 1
Q ss_pred eeeeeeeccceeEEEEcCCc--e-EEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcc
Q 046773 287 WRMLTEFTEFVGRVRVTSHE--S-AVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRR 363 (453)
Q Consensus 287 w~~l~~h~~~v~~v~~s~~~--~-~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~ 363 (453)
..++.+|...|.+|+|+|+. + ++++.|++|+|||+++++.+.... +...+...+|+++|..+++++.|+
T Consensus 118 ~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~------- 189 (568)
T PTZ00420 118 QCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGK------- 189 (568)
T ss_pred eEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCC-------
Confidence 13577899999999999865 2 345678999999999987655443 333444556678889998888899
Q ss_pred eEEEEEcCCCeeEEEEEecCCCeeEEE-----EeeCCCeEEEEeC-----CeEEEEECCC-CeEEEEeccc--CCceEE-
Q 046773 364 LAIVRRVDTFEEVCRFSLRADRNVNVM-----GCMNQGYALMCVE-----GVIRVWEVEG-GEYMYSFRER--IGEEVI- 429 (453)
Q Consensus 364 ~i~Iw~~~tg~~v~~l~~~~~~v~~~~-----~~~~~~~lls~s~-----~tIrlWD~~t-G~~l~tL~gh--~~~~V~- 429 (453)
+++|||..+++.+.++..|...+.... ++++++++++++. ++|+|||+.+ ++++.++..+ .+. +.
T Consensus 190 ~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~-L~p 268 (568)
T PTZ00420 190 HMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAP-LIP 268 (568)
T ss_pred EEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccc-eEE
Confidence 999999999999988888876543322 2367788887664 3899999995 6777766433 333 33
Q ss_pred EE-ecCCCEEEEE-eCCcEEEEecC
Q 046773 430 AF-VGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 430 a~-s~d~~~lasg-~D~~IklWDl~ 452 (453)
.+ .+++.++++| .|++|++|++.
T Consensus 269 ~~D~~tg~l~lsGkGD~tIr~~e~~ 293 (568)
T PTZ00420 269 HYDESTGLIYLIGKGDGNCRYYQHS 293 (568)
T ss_pred eeeCCCCCEEEEEECCCeEEEEEcc
Confidence 33 3457888899 99999999974
No 65
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.2e-21 Score=188.48 Aligned_cols=237 Identities=13% Similarity=0.181 Sum_probs=173.5
Q ss_pred eeCCCCCCCCCCeEEEEEEecCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCC
Q 046773 133 YFDPSDVDNPDGLTCRCLTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDG 212 (453)
Q Consensus 133 ~~~~~gh~~~d~v~v~~lafs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~ 212 (453)
.|.+.-|.-+ ++|||.++.++||||.|.||+|+|+.+...+.+|-.|.+ .|.++.|++.
T Consensus 36 lF~~~aH~~s----itavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~Hag--------sitaL~F~~~--------- 94 (362)
T KOG0294|consen 36 LFAFSAHAGS----ITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAG--------SITALKFYPP--------- 94 (362)
T ss_pred cccccccccc----eeEEEecceeEeccCCCCcEEEEeccchhhhcceecccc--------ceEEEEecCC---------
Confidence 4444567733 899999999999999999999999999999888875532 4565555432
Q ss_pred CEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeee
Q 046773 213 DIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTE 292 (453)
Q Consensus 213 tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~ 292 (453)
-.. ..|.||+.|+.|.+|++.+-+++ +++++
T Consensus 95 ----------------------------------~S~-shLlS~sdDG~i~iw~~~~W~~~--------------~slK~ 125 (362)
T KOG0294|consen 95 ----------------------------------LSK-SHLLSGSDDGHIIIWRVGSWELL--------------KSLKA 125 (362)
T ss_pred ----------------------------------cch-hheeeecCCCcEEEEEcCCeEEe--------------eeecc
Confidence 100 02678999999999998665543 67889
Q ss_pred eccceeEEEEcCCce-EEE-EcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEc
Q 046773 293 FTEFVGRVRVTSHES-AVA-CTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRV 370 (453)
Q Consensus 293 h~~~v~~v~~s~~~~-~va-s~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~ 370 (453)
|...|+.++++|.+. +++ ++|..+|+|||-+|+.-..... .+......+++.|++++.+..++ |-||..
T Consensus 126 H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~~--------i~i~q~ 196 (362)
T KOG0294|consen 126 HKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRNK--------IDIYQL 196 (362)
T ss_pred cccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEeccE--------EEEEec
Confidence 999999999998764 444 6788999999998854332211 11223467889999887766554 668877
Q ss_pred CCCeeEEEEEecCCCeeE-EEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEEEEe----cCCCEEEEE-eC
Q 046773 371 DTFEEVCRFSLRADRNVN-VMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVIAFV----GDDRHVAAS-CG 443 (453)
Q Consensus 371 ~tg~~v~~l~~~~~~v~~-~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~a~s----~d~~~lasg-~D 443 (453)
++......+.. + .+. .+-+.++.+++++.+ .+|++||..++.++..|.+|... |.++. |++.+|+|+ +|
T Consensus 197 d~A~v~~~i~~-~--~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~R-VK~i~~~~~~~~~~lvTaSSD 272 (362)
T KOG0294|consen 197 DNASVFREIEN-P--KRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENR-VKDIASYTNPEHEYLVTASSD 272 (362)
T ss_pred ccHhHhhhhhc-c--ccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhh-eeeeEEEecCCceEEEEeccC
Confidence 76432222221 1 122 233456788888888 99999999999999999999998 88665 677899999 99
Q ss_pred CcEEEEecC
Q 046773 444 TNIHLWDFG 452 (453)
Q Consensus 444 ~~IklWDl~ 452 (453)
|.|+|||+.
T Consensus 273 G~I~vWd~~ 281 (362)
T KOG0294|consen 273 GFIKVWDID 281 (362)
T ss_pred ceEEEEEcc
Confidence 999999985
No 66
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=3.4e-22 Score=206.64 Aligned_cols=274 Identities=15% Similarity=0.174 Sum_probs=200.1
Q ss_pred EEEecC---CEEEEEeCCCcEEEEECCCCe------EEEEecCCCCCccccccceEEEEEE--cCCeEEEEeCCCCEEEE
Q 046773 149 CLTLSD---LYLACGFADGAVRLFDLTTRL------HVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATLDGDIHVA 217 (453)
Q Consensus 149 ~lafs~---~~LaSGS~D~TIrlWD~~tg~------~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~D~tIkvW 217 (453)
.||.|. ++|.||+.|++||+|++..-. ++.+++.|. ..|..++. .++.|+|+|.|-|||||
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~Hs--------DWVNDiiL~~~~~tlIS~SsDtTVK~W 100 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHS--------DWVNDIILCGNGKTLISASSDTTVKVW 100 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhH--------hHHhhHHhhcCCCceEEecCCceEEEe
Confidence 577763 689999999999999985432 466666432 35665554 56789999999999999
Q ss_pred EeecCC---cceEEeeecceecCceEEEE-eCCCceeeEEEEeeCCCeEEEeeCCCCc-EEecccccCCcceeeeeeee-
Q 046773 218 VIDDVA---NETRTAHFGSVMDDGVLIDF-TGCSRYWVGLYAGLAGRAFHIWDRQAEE-VFVGGDLTDHNTVMGWRMLT- 291 (453)
Q Consensus 218 d~~~~g---~~~~~~~~~~v~~~~~~v~F-s~dg~~~~~LaSgS~D~tIrvWD~~tg~-~~~g~~l~~~~~v~~w~~l~- 291 (453)
+....+ ..+++.|...|- .|+. .++.. ..|||+-|+.|.|||++++. ++.+ + -+.+.. ..|.
T Consensus 101 ~~~~~~~~c~stir~H~DYVk----cla~~ak~~~---lvaSgGLD~~IflWDin~~~~~l~~-s---~n~~t~-~sl~s 168 (735)
T KOG0308|consen 101 NAHKDNTFCMSTIRTHKDYVK----CLAYIAKNNE---LVASGGLDRKIFLWDINTGTATLVA-S---FNNVTV-NSLGS 168 (735)
T ss_pred ecccCcchhHhhhhcccchhe----eeeecccCce---eEEecCCCccEEEEEccCcchhhhh-h---cccccc-ccCCC
Confidence 987632 677888887764 3555 55544 37899999999999999984 1211 0 011100 1233
Q ss_pred eeccceeEEEEcCCceEEEEcC--CcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEE
Q 046773 292 EFTEFVGRVRVTSHESAVACTS--SRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRR 369 (453)
Q Consensus 292 ~h~~~v~~v~~s~~~~~vas~d--~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~ 369 (453)
|+.+.|.+++..+.+.++++++ +.+|+||.++++.+..++||+..+.+.-++.+|.+++++|+|+ +||+||
T Consensus 169 G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDg-------tIrlWd 241 (735)
T KOG0308|consen 169 GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDG-------TIRLWD 241 (735)
T ss_pred CCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCc-------eEEeee
Confidence 7889999999998877666655 6799999999988888899999998888999999999999999 999999
Q ss_pred cCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCC-eEEEEecccCCceEEEEec---CCCEEEEEeCC
Q 046773 370 VDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGG-EYMYSFRERIGEEVIAFVG---DDRHVAASCGT 444 (453)
Q Consensus 370 ~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG-~~l~tL~gh~~~~V~a~s~---d~~~lasg~D~ 444 (453)
+..-.|+.++..|.+.|-++..+++-.++.+++. +.|..=|+.+- ++...++ .... |..+.. |...=++..|+
T Consensus 242 LgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick-~daP-v~~l~~~~~~~~~WvtTtds 319 (735)
T KOG0308|consen 242 LGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICK-EDAP-VLKLHLHEHDNSVWVTTTDS 319 (735)
T ss_pred ccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeec-CCCc-hhhhhhccccCCceeeeccc
Confidence 9999999999999998888888877777777765 88888888873 3333222 1122 332221 22222333677
Q ss_pred cEEEEec
Q 046773 445 NIHLWDF 451 (453)
Q Consensus 445 ~IklWDl 451 (453)
.|+=|-+
T Consensus 320 ~I~rW~~ 326 (735)
T KOG0308|consen 320 SIKRWKL 326 (735)
T ss_pred cceecCC
Confidence 8887754
No 67
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=6.4e-20 Score=178.74 Aligned_cols=258 Identities=14% Similarity=0.105 Sum_probs=175.4
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE--cCCeE-EEEeCCCCEEEEEeecCCcceEEeee
Q 046773 155 LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQL-IFATLDGDIHVAVIDDVANETRTAHF 231 (453)
Q Consensus 155 ~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~L-asgS~D~tIkvWd~~~~g~~~~~~~~ 231 (453)
+.++|++.|++|++||+.++++++++.++.. +.+++| +++.+ ++++.|++|++||..+ +........
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~---------~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~ 71 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR---------PRGITLSKDGKLLYVCASDSDTIQVIDLAT-GEVIGTLPS 71 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC---------CCceEECCCCCEEEEEECCCCeEEEEECCC-CcEEEeccC
Confidence 5788999999999999999999999986432 234555 46665 6678899999999887 411111111
Q ss_pred cceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEE-
Q 046773 232 GSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVA- 310 (453)
Q Consensus 232 ~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~va- 310 (453)
+ .+...++|+|+|+.+ +++++.|++|++||+++++.+. .+.. ...+..++++|++..++
T Consensus 72 ~---~~~~~~~~~~~g~~l--~~~~~~~~~l~~~d~~~~~~~~--------------~~~~-~~~~~~~~~~~dg~~l~~ 131 (300)
T TIGR03866 72 G---PDPELFALHPNGKIL--YIANEDDNLVTVIDIETRKVLA--------------EIPV-GVEPEGMAVSPDGKIVVN 131 (300)
T ss_pred C---CCccEEEECCCCCEE--EEEcCCCCeEEEEECCCCeEEe--------------EeeC-CCCcceEEECCCCCEEEE
Confidence 1 112247899999862 3456678999999999876431 1111 12346688998774333
Q ss_pred -EcC-CcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEe-CCCccccCcceEEEEEcCCCeeEEEEEecCC---
Q 046773 311 -CTS-SRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVE-NRELENQNRRLAIVRRVDTFEEVCRFSLRAD--- 384 (453)
Q Consensus 311 -s~d-~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s-~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~--- 384 (453)
+.+ ..+.+||++++.+..... ........+|++++..++.++ .++ .+++||..+++++..+.++..
T Consensus 132 ~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~-------~v~i~d~~~~~~~~~~~~~~~~~~ 203 (300)
T TIGR03866 132 TSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGG-------TVSVIDVATRKVIKKITFEIPGVH 203 (300)
T ss_pred EecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCC-------EEEEEEcCcceeeeeeeecccccc
Confidence 333 357889999876544321 112223356788888775443 467 999999999988777654321
Q ss_pred --C--eeEEEEeeCCCeEEEE-eC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE--eCCcEEEEecC
Q 046773 385 --R--NVNVMGCMNQGYALMC-VE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS--CGTNIHLWDFG 452 (453)
Q Consensus 385 --~--v~~~~~~~~~~~lls~-s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg--~D~~IklWDl~ 452 (453)
. ...+.+++++++++.+ ++ ++|.+||+++++.+..+.. ... ++ +|+||+++|+++ .+++|+|||+.
T Consensus 204 ~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~-~~~~~~~~~g~~l~~~~~~~~~i~v~d~~ 279 (300)
T TIGR03866 204 PEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV-GQR-VWQLAFTPDEKYLLTTNGVSNDVSVIDVA 279 (300)
T ss_pred cccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe-CCC-cceEEECCCCCEEEEEcCCCCeEEEEECC
Confidence 1 2346778888886544 34 8899999999988776532 223 44 788999998875 68999999975
No 68
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.4e-20 Score=176.35 Aligned_cols=235 Identities=13% Similarity=0.126 Sum_probs=180.3
Q ss_pred EEEEecCCCCCccccccceEEEEEEcC---CeEEEEeCCCCEEEEEeecCC-cceEE----eeecceecCceEEEEeCCC
Q 046773 176 HVRTFRPQHSDRLGQFSRAVSGIIITD---SQLIFATLDGDIHVAVIDDVA-NETRT----AHFGSVMDDGVLIDFTGCS 247 (453)
Q Consensus 176 ~~~tl~gh~~~~~~~~s~~V~~i~f~g---~~LasgS~D~tIkvWd~~~~g-~~~~~----~~~~~v~~~~~~v~Fs~dg 247 (453)
.++++.||.. .+..+++.+ ..|||+|.|++||+|+...+. ..+.+ +|.-.| ..|+++|+|
T Consensus 6 ~~~~~~gh~~--------r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsV----RsvAwsp~g 73 (312)
T KOG0645|consen 6 LEQKLSGHKD--------RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSV----RSVAWSPHG 73 (312)
T ss_pred eEEeecCCCC--------cEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchhee----eeeeecCCC
Confidence 4677888764 577788764 379999999999999987511 12221 133222 259999999
Q ss_pred ceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEE--EcCCcEEEEECCCC-
Q 046773 248 RYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVA--CTSSRVITFDLRNQ- 324 (453)
Q Consensus 248 ~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~va--s~d~tIrlWDl~t~- 324 (453)
++ ||+||+|.|+-||.-..++ | .+..+|.||...|.+|+++.++..+| |-|..|-+|.+..+
T Consensus 74 ~~---La~aSFD~t~~Iw~k~~~e-f-----------ecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd 138 (312)
T KOG0645|consen 74 RY---LASASFDATVVIWKKEDGE-F-----------ECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD 138 (312)
T ss_pred cE---EEEeeccceEEEeecCCCc-e-----------eEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC
Confidence 96 9999999999999877666 1 01256889999999999998775444 55789999998854
Q ss_pred --ceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcC-C--CeeEEEEEecCCCeeEEEEeeCCCeEE
Q 046773 325 --GMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVD-T--FEEVCRFSLRADRNVNVMGCMNQGYAL 399 (453)
Q Consensus 325 --~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~-t--g~~v~~l~~~~~~v~~~~~~~~~~~ll 399 (453)
.|+-.+.+|+|.+....+.|.-+.|+++|+|. |||+|.-. . -+|++++.+|.+.|-++.|.+.|.+++
T Consensus 139 Efec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDn-------TIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~ 211 (312)
T KOG0645|consen 139 EFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDN-------TIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLV 211 (312)
T ss_pred cEEEEeeeccccccccEEEEcCCcceeEEeccCC-------eEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEE
Confidence 45555678998888788888889999999999 99999655 2 378999999988899999999999999
Q ss_pred EEeC-CeEEEEECCCCeEEEEecc-cCCceEEEEecCCCEEEEE-eCCcEEEEe
Q 046773 400 MCVE-GVIRVWEVEGGEYMYSFRE-RIGEEVIAFVGDDRHVAAS-CGTNIHLWD 450 (453)
Q Consensus 400 s~s~-~tIrlWD~~tG~~l~tL~g-h~~~~V~a~s~d~~~lasg-~D~~IklWD 450 (453)
+|++ +||+||-.-+ .+++ |... +..+.=+.-.|||+ .|+.|+|+.
T Consensus 212 s~sdD~tv~Iw~~~~-----~~~~~~sr~-~Y~v~W~~~~IaS~ggD~~i~lf~ 259 (312)
T KOG0645|consen 212 SCSDDGTVSIWRLYT-----DLSGMHSRA-LYDVPWDNGVIASGGGDDAIRLFK 259 (312)
T ss_pred EecCCcceEeeeecc-----Ccchhcccc-eEeeeecccceEeccCCCEEEEEE
Confidence 9998 9999998652 3333 4444 55444345578998 999999975
No 69
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=4.6e-21 Score=193.09 Aligned_cols=262 Identities=16% Similarity=0.132 Sum_probs=198.3
Q ss_pred EEEEEecC----CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE--cCCeEEEEeCCCCEEEEEee
Q 046773 147 CRCLTLSD----LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATLDGDIHVAVID 220 (453)
Q Consensus 147 v~~lafs~----~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~D~tIkvWd~~ 220 (453)
|.+|.||| ++.+|+| .++.|++..+...+++|.- |-..|.++.| ||+.|+.|...|.|+|.|..
T Consensus 29 vssl~fsp~~P~d~aVt~S--~rvqly~~~~~~~~k~~sr--------Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k 98 (487)
T KOG0310|consen 29 VSSLCFSPKHPYDFAVTSS--VRVQLYSSVTRSVRKTFSR--------FKDVVYSVDFRSDGRLLAAGDESGHVKVFDMK 98 (487)
T ss_pred ceeEecCCCCCCceEEecc--cEEEEEecchhhhhhhHHh--------hccceeEEEeecCCeEEEccCCcCcEEEeccc
Confidence 89999998 5666665 5788999998888777642 3345677777 59999999999999999965
Q ss_pred cCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeE
Q 046773 221 DVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGR 299 (453)
Q Consensus 221 ~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~ 299 (453)
+.- +..+..|+..+. .+.|+|++.. .|++||.|+.+++||+.+.... ..+.+|++.|.+
T Consensus 99 ~r~iLR~~~ah~apv~----~~~f~~~d~t--~l~s~sDd~v~k~~d~s~a~v~--------------~~l~~htDYVR~ 158 (487)
T KOG0310|consen 99 SRVILRQLYAHQAPVH----VTKFSPQDNT--MLVSGSDDKVVKYWDLSTAYVQ--------------AELSGHTDYVRC 158 (487)
T ss_pred cHHHHHHHhhccCcee----EEEecccCCe--EEEecCCCceEEEEEcCCcEEE--------------EEecCCcceeEe
Confidence 511 455666766553 4789999876 5899999999999999988731 247799999999
Q ss_pred EEEcCCc---eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCC-ee
Q 046773 300 VRVTSHE---SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTF-EE 375 (453)
Q Consensus 300 v~~s~~~---~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg-~~ 375 (453)
..++|.. ++++|.|++||+||+++......+-.|++.+....+-|+|..+++|++. .+||||+.+| +.
T Consensus 159 g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn--------~vkVWDl~~G~ql 230 (487)
T KOG0310|consen 159 GDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGN--------SVKVWDLTTGGQL 230 (487)
T ss_pred eccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCC--------eEEEEEecCCcee
Confidence 9998753 3455678999999999863222233466666556667778888776542 7999999976 44
Q ss_pred EEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEE
Q 046773 376 VCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHL 448 (453)
Q Consensus 376 v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~Ikl 448 (453)
+..+.-|--.|.++....++..|++++- +.||++|+.+-+.++.+. -.++ |- +++||++.++.| .||.+-+
T Consensus 231 l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~p-vLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 231 LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGP-VLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred hhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee-cccc-eeeEEecCCCceEEEecccceeee
Confidence 4444436566888888888899998887 999999988888887764 2344 54 788999999999 9998765
No 70
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.88 E-value=3.6e-21 Score=200.33 Aligned_cols=224 Identities=18% Similarity=0.245 Sum_probs=169.8
Q ss_pred CeEEEEEEecC---CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc-CCeEEEEeCCCCEEEEEe
Q 046773 144 GLTCRCLTLSD---LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT-DSQLIFATLDGDIHVAVI 219 (453)
Q Consensus 144 ~v~v~~lafs~---~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~-g~~LasgS~D~tIkvWd~ 219 (453)
+.+.+.+.|-+ -.|++|+.|++|-||.+.+.+.+.+|+||.. .|.+++.. ...|+|||.|.|+|||-.
T Consensus 58 g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~s--------nVC~ls~~~~~~~iSgSWD~TakvW~~ 129 (745)
T KOG0301|consen 58 GFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKS--------NVCSLSIGEDGTLISGSWDSTAKVWRI 129 (745)
T ss_pred ceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhcccc--------ceeeeecCCcCceEecccccceEEecc
Confidence 34444355543 3699999999999999999999999999875 57777743 345899999999999987
Q ss_pred ecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeE
Q 046773 220 DDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGR 299 (453)
Q Consensus 220 ~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~ 299 (453)
.. ....+.+|+..|. .|.+=|++. ++|||.|++||+|.- ++++ +++.+|++.|..
T Consensus 130 ~~-l~~~l~gH~asVW----Av~~l~e~~----~vTgsaDKtIklWk~--~~~l--------------~tf~gHtD~VRg 184 (745)
T KOG0301|consen 130 GE-LVYSLQGHTASVW----AVASLPENT----YVTGSADKTIKLWKG--GTLL--------------KTFSGHTDCVRG 184 (745)
T ss_pred hh-hhcccCCcchhee----eeeecCCCc----EEeccCcceeeeccC--Cchh--------------hhhccchhheee
Confidence 65 2355778888776 356666654 679999999999986 3322 456789999999
Q ss_pred EEEcCC-ceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEE--ecCCEEEEEeCCCccccCcceEEEEEcCCCeeE
Q 046773 300 VRVTSH-ESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVD--VNAEAYIVVENRELENQNRRLAIVRRVDTFEEV 376 (453)
Q Consensus 300 v~~s~~-~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~--~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v 376 (453)
+++-++ +.++++.|+.||+||+ +|+|+++..|| .+++++++ .++..+++.+-|+ ++|||..+ +|+
T Consensus 185 L~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~gh--tn~vYsis~~~~~~~Ivs~gEDr-------tlriW~~~--e~~ 252 (745)
T KOG0301|consen 185 LAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGH--TNFVYSISMALSDGLIVSTGEDR-------TLRIWKKD--ECV 252 (745)
T ss_pred eEEecCCCeEeecCCceEEEEec-cCceeeeeecc--ceEEEEEEecCCCCeEEEecCCc-------eEEEeecC--ceE
Confidence 998776 5566667899999999 67888776555 56666665 5667788888888 99999887 788
Q ss_pred EEEEecCCCeeEEEEeeCCCeEEEEeCCeEEEEECC
Q 046773 377 CRFSLRADRNVNVMGCMNQGYALMCVEGVIRVWEVE 412 (453)
Q Consensus 377 ~~l~~~~~~v~~~~~~~~~~~lls~s~~tIrlWD~~ 412 (453)
+.++.-.-.+-++..-++|+.++.||+|.||||-..
T Consensus 253 q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 253 QVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred EEEecCccceEEEEEeeCCCEEEeccCceEEEEEec
Confidence 887754433445544557777666777999999765
No 71
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=9.7e-21 Score=196.16 Aligned_cols=226 Identities=19% Similarity=0.251 Sum_probs=174.4
Q ss_pred EEEEEec--CCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCC-
Q 046773 147 CRCLTLS--DLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVA- 223 (453)
Q Consensus 147 v~~lafs--~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g- 223 (453)
|+++.++ +.+||.|-.+++|.|||+++.+.++++.++|. ..|.+++..+..+.+|+.|+.|..+|+....
T Consensus 220 vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~-------~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~ 292 (484)
T KOG0305|consen 220 VTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHA-------SRVGSLAWNSSVLSSGSRDGKILNHDVRISQH 292 (484)
T ss_pred eEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcC-------ceeEEEeccCceEEEecCCCcEEEEEEecchh
Confidence 8899998 57999999999999999999999999998544 2688899999999999999999999998732
Q ss_pred -cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEE
Q 046773 224 -NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRV 302 (453)
Q Consensus 224 -~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~ 302 (453)
..++++|...|- -+.+++|+++ ||||+.|+.+.|||..+.+.. +++.+|++.|.++++
T Consensus 293 ~~~~~~~H~qeVC----gLkws~d~~~---lASGgnDN~~~Iwd~~~~~p~--------------~~~~~H~aAVKA~aw 351 (484)
T KOG0305|consen 293 VVSTLQGHRQEVC----GLKWSPDGNQ---LASGGNDNVVFIWDGLSPEPK--------------FTFTEHTAAVKALAW 351 (484)
T ss_pred hhhhhhcccceee----eeEECCCCCe---eccCCCccceEeccCCCcccc--------------EEEeccceeeeEeee
Confidence 234667766553 4899999996 899999999999999554411 346789999999999
Q ss_pred cCCc---eEEEE--cCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEE
Q 046773 303 TSHE---SAVAC--TSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVC 377 (453)
Q Consensus 303 s~~~---~~vas--~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~ 377 (453)
+|-. +++++ .|.+||+||..++.++... +|+..|+
T Consensus 352 cP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v----------------------------------------dtgsQVc 391 (484)
T KOG0305|consen 352 CPWQSGLLATGGGSADRCIKFWNTNTGARIDSV----------------------------------------DTGSQVC 391 (484)
T ss_pred CCCccCceEEcCCCcccEEEEEEcCCCcEeccc----------------------------------------ccCCcee
Confidence 9743 34442 3678999999887654321 1222222
Q ss_pred EEEecCCCeeEEEEeeCCCeEEEEeC---CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEec
Q 046773 378 RFSLRADRNVNVMGCMNQGYALMCVE---GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 378 ~l~~~~~~v~~~~~~~~~~~lls~s~---~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl 451 (453)
++++++..+.++++-+ +.|.||+..+-+.+..|.||... |- +++|||..|++| .|.|+|+|++
T Consensus 392 ----------sL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~R-Vl~la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 392 ----------SLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSR-VLYLALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred ----------eEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcce-eEEEEECCCCCEEEEecccCcEEeccc
Confidence 3333334444555433 78899999988888889999888 66 678999999998 8999999986
No 72
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.87 E-value=8e-21 Score=186.37 Aligned_cols=235 Identities=14% Similarity=0.108 Sum_probs=166.8
Q ss_pred ceEEEEEEcCCeEEEEeCCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcE
Q 046773 193 RAVSGIIITDSQLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEV 272 (453)
Q Consensus 193 ~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~ 272 (453)
..|++|...++.|.||+.|++++|||.....+.++.+|++.+.. .+-..++.... .++|+|.|.|+++|-++-++.
T Consensus 106 DWVSsv~~~~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~---v~~v~~n~~~~-~fvsas~Dqtl~Lw~~~~~~~ 181 (423)
T KOG0313|consen 106 DWVSSVKGASKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKS---VAWVIKNSSSC-LFVSASMDQTLRLWKWNVGEN 181 (423)
T ss_pred hhhhhhcccCceEEEeecCCeeEEEecCCceEEEEecCCcceee---eEEEecCCccc-eEEEecCCceEEEEEecCchh
Confidence 46777777788999999999999999876337788889887642 11122222211 378999999999999988872
Q ss_pred EecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEEEcCCcEEEEECCCC-------------------------c
Q 046773 273 FVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVACTSSRVITFDLRNQ-------------------------G 325 (453)
Q Consensus 273 ~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~vas~d~tIrlWDl~t~-------------------------~ 325 (453)
. +...+.-+||...|-+|...+++. +++|.|.+|+||+.++- .
T Consensus 182 ~----------~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~ 251 (423)
T KOG0313|consen 182 K----------VKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRT 251 (423)
T ss_pred h----------hhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccC
Confidence 1 001122348999999999877664 55677899999992210 0
Q ss_pred eEEEEeeccCCeEEEEEEec-CCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-
Q 046773 326 MVLGERGYGRGLYVTSVDVN-AEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE- 403 (453)
Q Consensus 326 ~~~~~~g~~~~~~v~~~~~~-g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~- 403 (453)
-+.++.||.. .|.++-++ ...+.++|-|- |||+||+.++.++.++.... ....+..++....+++++.
T Consensus 252 P~vtl~GHt~--~Vs~V~w~d~~v~yS~SwDH-------TIk~WDletg~~~~~~~~~k-sl~~i~~~~~~~Ll~~gssd 321 (423)
T KOG0313|consen 252 PLVTLEGHTE--PVSSVVWSDATVIYSVSWDH-------TIKVWDLETGGLKSTLTTNK-SLNCISYSPLSKLLASGSSD 321 (423)
T ss_pred ceEEeccccc--ceeeEEEcCCCceEeecccc-------eEEEEEeecccceeeeecCc-ceeEeecccccceeeecCCC
Confidence 1122356654 45665443 56678899999 99999999999888776443 2445555565566666555
Q ss_pred CeEEEEECCCC---eEEEEecccCCceEEEE--ec-CCCEEEEE-eCCcEEEEecC
Q 046773 404 GVIRVWEVEGG---EYMYSFRERIGEEVIAF--VG-DDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 404 ~tIrlWD~~tG---~~l~tL~gh~~~~V~a~--s~-d~~~lasg-~D~~IklWDl~ 452 (453)
..|||||.+++ -..++|.||.++ |.++ +| +..+++|+ +|+++||||+.
T Consensus 322 r~irl~DPR~~~gs~v~~s~~gH~nw-Vssvkwsp~~~~~~~S~S~D~t~klWDvR 376 (423)
T KOG0313|consen 322 RHIRLWDPRTGDGSVVSQSLIGHKNW-VSSVKWSPTNEFQLVSGSYDNTVKLWDVR 376 (423)
T ss_pred CceeecCCCCCCCceeEEeeecchhh-hhheecCCCCceEEEEEecCCeEEEEEec
Confidence 99999999986 335789999998 8865 46 55678999 99999999985
No 73
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.1e-19 Score=173.23 Aligned_cols=265 Identities=16% Similarity=0.191 Sum_probs=193.4
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeC--CCCEEEEEeecC
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATL--DGDIHVAVIDDV 222 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~--D~tIkvWd~~~~ 222 (453)
+.++.|++ ..|++.|.|.+|+|+|..+|++++++..++ +|+ .+..+.-....++.+|. |.|||.-++.+.
T Consensus 17 i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skk---yG~---~~~~Fth~~~~~i~sStk~d~tIryLsl~dN 90 (311)
T KOG1446|consen 17 INSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKK---YGV---DLACFTHHSNTVIHSSTKEDDTIRYLSLHDN 90 (311)
T ss_pred eeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeeccc---ccc---cEEEEecCCceEEEccCCCCCceEEEEeecC
Confidence 78999974 799999999999999999999999996432 332 12223334566777777 999999998773
Q ss_pred C-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEE
Q 046773 223 A-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVR 301 (453)
Q Consensus 223 g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~ 301 (453)
- ++.+.+|...|. .+..+|-+.. ..|+|.|+|||+||+++.++.- .| +...-...+
T Consensus 91 kylRYF~GH~~~V~----sL~~sP~~d~---FlS~S~D~tvrLWDlR~~~cqg--------------~l--~~~~~pi~A 147 (311)
T KOG1446|consen 91 KYLRYFPGHKKRVN----SLSVSPKDDT---FLSSSLDKTVRLWDLRVKKCQG--------------LL--NLSGRPIAA 147 (311)
T ss_pred ceEEEcCCCCceEE----EEEecCCCCe---EEecccCCeEEeeEecCCCCce--------------EE--ecCCCccee
Confidence 2 666778877765 4788888864 6799999999999999776320 00 011223468
Q ss_pred EcCCceEEEEc--CCcEEEEECCCCc-eEEE-Ee---eccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCe
Q 046773 302 VTSHESAVACT--SSRVITFDLRNQG-MVLG-ER---GYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFE 374 (453)
Q Consensus 302 ~s~~~~~vas~--d~tIrlWDl~t~~-~~~~-~~---g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~ 374 (453)
|+|.+++.|.. ...|+|+|+++-+ -..+ .. +-..+-....|+++|..++..+..+ .+.|-|.-+|+
T Consensus 148 fDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s-------~~~~lDAf~G~ 220 (311)
T KOG1446|consen 148 FDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNAS-------FIYLLDAFDGT 220 (311)
T ss_pred ECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCC-------cEEEEEccCCc
Confidence 99999866643 3489999999742 1211 11 1111223467889999888888888 88999999999
Q ss_pred eEEEEEecCCCe---eEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecc-cCCceEEEEecCCCE--EEEEeCCcEE
Q 046773 375 EVCRFSLRADRN---VNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRE-RIGEEVIAFVGDDRH--VAASCGTNIH 447 (453)
Q Consensus 375 ~v~~l~~~~~~v---~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~g-h~~~~V~a~s~d~~~--lasg~D~~Ik 447 (453)
.++++++.++.. ....|.||+.+++++++ ++|.+|++++|+....+.| +.+. +.++..+.++ .||+ |..+-
T Consensus 221 ~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~-~~~~~fnP~~~mf~sa-~s~l~ 298 (311)
T KOG1446|consen 221 VKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGP-VSCVRFNPRYAMFVSA-SSNLV 298 (311)
T ss_pred EeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCC-ccccccCCceeeeeec-CceEE
Confidence 999999887553 45678899999999988 9999999999999999998 4555 6655555554 4444 66777
Q ss_pred EE
Q 046773 448 LW 449 (453)
Q Consensus 448 lW 449 (453)
+|
T Consensus 299 fw 300 (311)
T KOG1446|consen 299 FW 300 (311)
T ss_pred EE
Confidence 77
No 74
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=7.7e-21 Score=201.87 Aligned_cols=280 Identities=11% Similarity=0.168 Sum_probs=181.1
Q ss_pred CCCCCCCeEEEEEEec--CCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCc-cccc-cceEEEEEEc-----CC--eEE
Q 046773 138 DVDNPDGLTCRCLTLS--DLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDR-LGQF-SRAVSGIIIT-----DS--QLI 206 (453)
Q Consensus 138 gh~~~d~v~v~~lafs--~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~-~~~~-s~~V~~i~f~-----g~--~La 206 (453)
.|.+ + |+|+.|| |+|||||+-|+-||||.+..-+..+.-.+-.... +... ...+..+..+ ++ ..-
T Consensus 265 ah~g--a--Iw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 265 AHKG--A--IWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccCC--c--EEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 7873 4 6788887 5799999999999999997643311111000000 0000 0000000000 01 111
Q ss_pred EEeCCCCEEEEEe----ecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCc
Q 046773 207 FATLDGDIHVAVI----DDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHN 282 (453)
Q Consensus 207 sgS~D~tIkvWd~----~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~ 282 (453)
.++....+.+-+. ...-++.+.+|++.|.+ |..|.++- |.|+|+|+|||||++.+.+||.
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILD----lSWSKn~f----LLSSSMDKTVRLWh~~~~~CL~-------- 404 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILD----LSWSKNNF----LLSSSMDKTVRLWHPGRKECLK-------- 404 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhhee----cccccCCe----eEeccccccEEeecCCCcceee--------
Confidence 1222222211111 10003556788887753 77777743 7899999999999999888653
Q ss_pred ceeeeeeeeeeccceeEEEEcCCc---eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccc
Q 046773 283 TVMGWRMLTEFTEFVGRVRVTSHE---SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELEN 359 (453)
Q Consensus 283 ~v~~w~~l~~h~~~v~~v~~s~~~---~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~ 359 (453)
.-.|.++|.||+|+|.. .+++|-|+.||||++...+...-...+ .-+...||.|+|+..+.|+..|
T Consensus 405 -------~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G--- 473 (712)
T KOG0283|consen 405 -------VFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNG--- 473 (712)
T ss_pred -------EEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEecc---
Confidence 22688999999999832 466678999999999876543221111 1233467899999999999999
Q ss_pred cCcceEEEEEcCCCeeEEEEEec--------CCCeeEEEEeeC-C-CeEEEEeCCeEEEEECCCCeEEEEecccCCc--e
Q 046773 360 QNRRLAIVRRVDTFEEVCRFSLR--------ADRNVNVMGCMN-Q-GYALMCVEGVIRVWEVEGGEYMYSFRERIGE--E 427 (453)
Q Consensus 360 ~~~~~i~Iw~~~tg~~v~~l~~~--------~~~v~~~~~~~~-~-~~lls~s~~tIrlWD~~tG~~l~tL~gh~~~--~ 427 (453)
.+++++...-+.++.+..+ ...|.++.++|. . +.|+++.|..|||.|..+-..+..|.|+... .
T Consensus 474 ----~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ 549 (712)
T KOG0283|consen 474 ----YCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQ 549 (712)
T ss_pred ----EEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcc
Confidence 9999988765544443222 123667777752 3 3455566699999999998999999987532 3
Q ss_pred EE-EEecCCCEEEEE-eCCcEEEEecC
Q 046773 428 VI-AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 428 V~-a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
+. +|+.||++|+++ .|.-|.||++.
T Consensus 550 ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 550 ISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred eeeeEccCCCEEEEeecCceEEEEeCC
Confidence 44 788999999999 99999999973
No 75
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.5e-21 Score=201.90 Aligned_cols=223 Identities=16% Similarity=0.190 Sum_probs=172.6
Q ss_pred CCeEEEEeCCCCEEEEEeecC-C------cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEe
Q 046773 202 DSQLIFATLDGDIHVAVIDDV-A------NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFV 274 (453)
Q Consensus 202 g~~LasgS~D~tIkvWd~~~~-g------~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~ 274 (453)
++.|.||+.|++|++|++... + +..+..|..++.+ ++...+|+. |+|+|.|.||++|++..+..+
T Consensus 37 ~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVND----iiL~~~~~t---lIS~SsDtTVK~W~~~~~~~~- 108 (735)
T KOG0308|consen 37 GRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVND----IILCGNGKT---LISASSDTTVKVWNAHKDNTF- 108 (735)
T ss_pred CceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhh----HHhhcCCCc---eEEecCCceEEEeecccCcch-
Confidence 566999999999999998641 1 2344557776642 455566764 889999999999999876422
Q ss_pred cccccCCcceeeeeeeeeeccceeEEEE-cCCceEEEE--cCCcEEEEECCCCce--EEEE-------eeccCCeEEEEE
Q 046773 275 GGDLTDHNTVMGWRMLTEFTEFVGRVRV-TSHESAVAC--TSSRVITFDLRNQGM--VLGE-------RGYGRGLYVTSV 342 (453)
Q Consensus 275 g~~l~~~~~v~~w~~l~~h~~~v~~v~~-s~~~~~vas--~d~tIrlWDl~t~~~--~~~~-------~g~~~~~~v~~~ 342 (453)
+..+++.|.++|.|+++ -++..+++| -|..|.|||+.++.. +... .+.++...+++|
T Consensus 109 -----------c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSL 177 (735)
T KOG0308|consen 109 -----------CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSL 177 (735)
T ss_pred -----------hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeee
Confidence 12568899999999998 555544444 478999999998722 2111 122344556777
Q ss_pred EecCC--EEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEE
Q 046773 343 DVNAE--AYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYS 419 (453)
Q Consensus 343 ~~~g~--~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~t 419 (453)
+.+.+ .+++|+-.+ .+++||-.+.+.+..+.+|.+.|+.+....+|++++++|+ +||||||+..-+|+.|
T Consensus 178 A~N~t~t~ivsGgtek-------~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T 250 (735)
T KOG0308|consen 178 AMNQTGTIIVSGGTEK-------DLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLAT 250 (735)
T ss_pred ecCCcceEEEecCccc-------ceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeee
Confidence 65555 666666666 9999999999999999999999999999999999998887 9999999999999999
Q ss_pred ecccCCceEEEEe--cCCCEEEEE-eCCcEEEEec
Q 046773 420 FRERIGEEVIAFV--GDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 420 L~gh~~~~V~a~s--~d~~~lasg-~D~~IklWDl 451 (453)
+..|.+. ||++. |+=.++.+| .|+.|..=|+
T Consensus 251 ~~vH~e~-VWaL~~~~sf~~vYsG~rd~~i~~Tdl 284 (735)
T KOG0308|consen 251 YIVHKEG-VWALQSSPSFTHVYSGGRDGNIYRTDL 284 (735)
T ss_pred EEeccCc-eEEEeeCCCcceEEecCCCCcEEeccc
Confidence 9999999 99775 555688899 9999876554
No 76
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.87 E-value=5.7e-22 Score=185.53 Aligned_cols=243 Identities=15% Similarity=0.170 Sum_probs=183.8
Q ss_pred EEeeCCCCCCCCCCeEEEEEEecCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEE
Q 046773 131 NLYFDPSDVDNPDGLTCRCLTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFA 208 (453)
Q Consensus 131 ~~~~~~~gh~~~d~v~v~~lafs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~Lasg 208 (453)
+..|+ ||. ..||-.||.=+..+.||++.|=|.||||.-||..+++|. | .+ -|++++|+ ...|++|
T Consensus 52 igtfe--ghk--gavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-h-kh-------ivk~~af~~ds~~lltg 118 (334)
T KOG0278|consen 52 IGTFE--GHK--GAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-H-KH-------IVKAVAFSQDSNYLLTG 118 (334)
T ss_pred EEeee--ccC--cceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-h-hh-------eeeeEEecccchhhhcc
Confidence 44543 898 456555554445689999999999999999999999997 3 32 57889996 4579999
Q ss_pred eCCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceee
Q 046773 209 TLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMG 286 (453)
Q Consensus 209 S~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~ 286 (453)
+.++-+||+|++.+- ..-+.+|++.|. .+-|....+. +.|.+.|+|||+||.+||....
T Consensus 119 g~ekllrvfdln~p~App~E~~ghtg~Ir----~v~wc~eD~~---iLSSadd~tVRLWD~rTgt~v~------------ 179 (334)
T KOG0278|consen 119 GQEKLLRVFDLNRPKAPPKEISGHTGGIR----TVLWCHEDKC---ILSSADDKTVRLWDHRTGTEVQ------------ 179 (334)
T ss_pred chHHHhhhhhccCCCCCchhhcCCCCcce----eEEEeccCce---EEeeccCCceEEEEeccCcEEE------------
Confidence 999999999998754 334566777654 2445444343 5577999999999999998431
Q ss_pred eeeeeeeccceeEEEEcCCceEEEEcC-CcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceE
Q 046773 287 WRMLTEFTEFVGRVRVTSHESAVACTS-SRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLA 365 (453)
Q Consensus 287 w~~l~~h~~~v~~v~~s~~~~~vas~d-~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i 365 (453)
+| ....+|+++-+++++.++.-.+ ++|+.||..+-+.++...-. -.+...++.|..+.++.+..|. -+
T Consensus 180 --sL-~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P~k~~fVaGged~-------~~ 248 (334)
T KOG0278|consen 180 --SL-EFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMP-CNVESASLHPKKEFFVAGGEDF-------KV 248 (334)
T ss_pred --EE-ecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCc-cccccccccCCCceEEecCcce-------EE
Confidence 11 2346799999998887776555 68999999997766543211 1223345778888888888888 88
Q ss_pred EEEEcCCCeeEEEE-EecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeE
Q 046773 366 IVRRVDTFEEVCRF-SLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEY 416 (453)
Q Consensus 366 ~Iw~~~tg~~v~~l-~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~ 416 (453)
..+|.+||+++..+ .+|...|..+.|+|+|..-+++|. ||||||.+.-++.
T Consensus 249 ~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 249 YKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred EEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 88999999998886 788888999999999988777777 9999999987654
No 77
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=3.1e-20 Score=177.90 Aligned_cols=260 Identities=14% Similarity=0.171 Sum_probs=179.1
Q ss_pred CCeEEEEEEecC---CEEEEEeCCCcEEEEECCC-CeEE-EEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEE
Q 046773 143 DGLTCRCLTLSD---LYLACGFADGAVRLFDLTT-RLHV-RTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIH 215 (453)
Q Consensus 143 d~v~v~~lafs~---~~LaSGS~D~TIrlWD~~t-g~~~-~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIk 215 (453)
|+ |.+|+||| .+|+.||+|+|||+|+++. |... +....|.+ .|-+++++ |.++++|++|+.+|
T Consensus 28 Ds--IS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~--------PvL~v~WsddgskVf~g~~Dk~~k 97 (347)
T KOG0647|consen 28 DS--ISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDG--------PVLDVCWSDDGSKVFSGGCDKQAK 97 (347)
T ss_pred cc--hheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCC--------CeEEEEEccCCceEEeeccCCceE
Confidence 56 78999998 3788999999999999987 4432 22222222 46667774 78999999999999
Q ss_pred EEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeec
Q 046773 216 VAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFT 294 (453)
Q Consensus 216 vWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~ 294 (453)
+||+.+ + ......|.+.|. .++|=+...+ -.|++||.|+|||.||.+....... ....
T Consensus 98 ~wDL~S-~Q~~~v~~Hd~pvk----t~~wv~~~~~-~cl~TGSWDKTlKfWD~R~~~pv~t---------------~~LP 156 (347)
T KOG0647|consen 98 LWDLAS-GQVSQVAAHDAPVK----TCHWVPGMNY-QCLVTGSWDKTLKFWDTRSSNPVAT---------------LQLP 156 (347)
T ss_pred EEEccC-CCeeeeeeccccee----EEEEecCCCc-ceeEecccccceeecccCCCCeeee---------------eecc
Confidence 999998 5 444555766543 2454443322 2489999999999999997662210 1223
Q ss_pred cceeEEEEcCCceEEEEcCCcEEEEECCCCceEEEE-e-eccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCC
Q 046773 295 EFVGRVRVTSHESAVACTSSRVITFDLRNQGMVLGE-R-GYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDT 372 (453)
Q Consensus 295 ~~v~~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~~-~-g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~t 372 (453)
+.|.+.-+-..-.+++..+..|.+++|+++...... . .-..+..+.+...+.+..++||-.| -+-|..++.
T Consensus 157 eRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEG-------rv~iq~id~ 229 (347)
T KOG0647|consen 157 ERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEG-------RVAIQYIDD 229 (347)
T ss_pred ceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecc-------eEEEEecCC
Confidence 445554333334677788899999999876433221 1 0011234455557778889999999 888888887
Q ss_pred CeeEE--EEEecCC---------CeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEE
Q 046773 373 FEEVC--RFSLRAD---------RNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHV 438 (453)
Q Consensus 373 g~~v~--~l~~~~~---------~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~l 438 (453)
+.... +|..|.+ .|.++.|+|.-+.++++++ |++-.||-.....|.+.+-|... |. +|..+|.+.
T Consensus 230 ~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qp-Itcc~fn~~G~if 308 (347)
T KOG0647|consen 230 PNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQP-ITCCSFNRNGSIF 308 (347)
T ss_pred CCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCc-cceeEecCCCCEE
Confidence 63333 3444431 1556789998888887666 99999999988888888878777 77 677899887
Q ss_pred EEE
Q 046773 439 AAS 441 (453)
Q Consensus 439 asg 441 (453)
|=+
T Consensus 309 aYA 311 (347)
T KOG0647|consen 309 AYA 311 (347)
T ss_pred EEE
Confidence 643
No 78
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.85 E-value=1.1e-19 Score=177.61 Aligned_cols=246 Identities=13% Similarity=0.111 Sum_probs=174.3
Q ss_pred CCCCCCCeEEEEEEec--CCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCC
Q 046773 138 DVDNPDGLTCRCLTLS--DLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGD 213 (453)
Q Consensus 138 gh~~~d~v~v~~lafs--~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~t 213 (453)
||. |+ |+|+.|| +.+||||..++.|+||++.||....+|-..-. .+.=+... ++.|+.|+.|+.
T Consensus 104 gHK--DS--Vt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~--------dieWl~WHp~a~illAG~~DGs 171 (399)
T KOG0296|consen 104 GHK--DS--VTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVE--------DIEWLKWHPRAHILLAGSTDGS 171 (399)
T ss_pred CCC--Cc--eEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccC--------ceEEEEecccccEEEeecCCCc
Confidence 899 67 5666665 68999999999999999999999888852111 11113333 678999999999
Q ss_pred EEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcE-Ee-c----ccccC-Cccee
Q 046773 214 IHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEV-FV-G----GDLTD-HNTVM 285 (453)
Q Consensus 214 IkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~-~~-g----~~l~~-~~~v~ 285 (453)
+-+|.+...+ .+.+.+|...... =.|.|||+. +++|..|+||++||.+||+. +. + ..++- .....
T Consensus 172 vWmw~ip~~~~~kv~~Gh~~~ct~----G~f~pdGKr---~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~ 244 (399)
T KOG0296|consen 172 VWMWQIPSQALCKVMSGHNSPCTC----GEFIPDGKR---ILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLA 244 (399)
T ss_pred EEEEECCCcceeeEecCCCCCccc----ccccCCCce---EEEEecCceEEEEecCCCceeEEecccccCcCCccccccc
Confidence 9999987733 5677777654432 258899997 78999999999999999982 21 1 00100 00000
Q ss_pred ee------------------------------eeeeeeccceeEEEEcCCc-----eEEEEcCCcEEEEECCCCceEEEE
Q 046773 286 GW------------------------------RMLTEFTEFVGRVRVTSHE-----SAVACTSSRVITFDLRNQGMVLGE 330 (453)
Q Consensus 286 ~w------------------------------~~l~~h~~~v~~v~~s~~~-----~~vas~d~tIrlWDl~t~~~~~~~ 330 (453)
+| +...++...+.+|.+.|-. .++++-|++|-|||+.+-...+..
T Consensus 245 ~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c 324 (399)
T KOG0296|consen 245 GSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC 324 (399)
T ss_pred cceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheec
Confidence 00 0111333334445443321 134456899999999975432222
Q ss_pred eeccCCeEEEEEEecC-CEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEE
Q 046773 331 RGYGRGLYVTSVDVNA-EAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRV 408 (453)
Q Consensus 331 ~g~~~~~~v~~~~~~g-~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrl 408 (453)
.| ...|..+-+.+ ..+++++.+| ++++||..||+++.+.++|...|...+.+++.+.++++|+ ++.+|
T Consensus 325 -~h--e~~V~~l~w~~t~~l~t~c~~g-------~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~V 394 (399)
T KOG0296|consen 325 -EH--EDGVTKLKWLNTDYLLTACANG-------KVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALV 394 (399)
T ss_pred -cC--CCceEEEEEcCcchheeeccCc-------eEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEE
Confidence 23 33467776666 6788899999 9999999999999999999999999999999999999998 99999
Q ss_pred EECC
Q 046773 409 WEVE 412 (453)
Q Consensus 409 WD~~ 412 (453)
.++.
T Consensus 395 F~v~ 398 (399)
T KOG0296|consen 395 FEVP 398 (399)
T ss_pred EecC
Confidence 9864
No 79
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.85 E-value=4.8e-21 Score=189.30 Aligned_cols=228 Identities=11% Similarity=0.170 Sum_probs=178.1
Q ss_pred EEEEE--EcCCeEEEEeCCCCEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc
Q 046773 195 VSGII--ITDSQLIFATLDGDIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE 271 (453)
Q Consensus 195 V~~i~--f~g~~LasgS~D~tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~ 271 (453)
|..|. ++|++|++||..|..-+|+..+.- ...++.|...|. .+..+++|.| ++||+.|+.||+|+.+-..
T Consensus 99 V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr----~m~ws~~g~w---miSgD~gG~iKyWqpnmnn 171 (464)
T KOG0284|consen 99 VNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVR----TMKWSHNGTW---MISGDKGGMIKYWQPNMNN 171 (464)
T ss_pred eeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccce----eEEEccCCCE---EEEcCCCceEEecccchhh
Confidence 34454 468899999999999999965411 234556655443 4789999998 8899999999999986544
Q ss_pred EEecccccCCcceeeeeeeee-eccceeEEEEcCC-ceEEE-EcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCE
Q 046773 272 VFVGGDLTDHNTVMGWRMLTE-FTEFVGRVRVTSH-ESAVA-CTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEA 348 (453)
Q Consensus 272 ~~~g~~l~~~~~v~~w~~l~~-h~~~v~~v~~s~~-~~~va-s~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~ 348 (453)
. +.... |...|.+|+|+|+ ..+++ |+|++|||||....+....+.||+-.+......|.-..
T Consensus 172 V---------------k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgL 236 (464)
T KOG0284|consen 172 V---------------KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGL 236 (464)
T ss_pred h---------------HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccce
Confidence 1 12223 4488999999974 34555 56789999999876554555777654433333455566
Q ss_pred EEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCce
Q 046773 349 YIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEE 427 (453)
Q Consensus 349 l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~ 427 (453)
++++|.|. .||+||..+|+|++++..|.+.|..+.|.+++.+|+++|- ..+|+.|+.+=+.+.+++||...
T Consensus 237 iasgskDn-------lVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkd- 308 (464)
T KOG0284|consen 237 IASGSKDN-------LVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKD- 308 (464)
T ss_pred eEEccCCc-------eeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhh-
Confidence 78888887 9999999999999999999999999999999999998887 99999999999999999999999
Q ss_pred EEEE--ec-CCCEEEEE-eCCcEEEEecC
Q 046773 428 VIAF--VG-DDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 428 V~a~--s~-d~~~lasg-~D~~IklWDl~ 452 (453)
|+++ +| ....+++| .|+.|..|.++
T Consensus 309 v~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 309 VTSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred heeeccccccccceeeccCCCceEEEecc
Confidence 8865 67 55578888 99999999875
No 80
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.84 E-value=1.3e-19 Score=181.60 Aligned_cols=232 Identities=20% Similarity=0.267 Sum_probs=164.6
Q ss_pred CCCCCCCeEEEEEEecCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEE
Q 046773 138 DVDNPDGLTCRCLTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIH 215 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIk 215 (453)
+|. +.++..++..+++|||||..|..|.|||.+|++.+++|.+|.. .|.+++|- .+.|+++|.|++||
T Consensus 200 ~h~--keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~--------~V~~L~fr~gt~~lys~s~Drsvk 269 (479)
T KOG0299|consen 200 GHV--KEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRG--------AVSSLAFRKGTSELYSASADRSVK 269 (479)
T ss_pred ccc--ceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhccccccc--------ceeeeeeecCccceeeeecCCceE
Confidence 787 5655555555568999999999999999999999999998765 68889985 46799999999999
Q ss_pred EEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeec
Q 046773 216 VAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFT 294 (453)
Q Consensus 216 vWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~ 294 (453)
||+++.-. +.++-+|...|.. |+-...++ .+-.|..|+|+|||++.....+ +.++|.
T Consensus 270 vw~~~~~s~vetlyGHqd~v~~----IdaL~reR---~vtVGgrDrT~rlwKi~eesql---------------ifrg~~ 327 (479)
T KOG0299|consen 270 VWSIDQLSYVETLYGHQDGVLG----IDALSRER---CVTVGGRDRTVRLWKIPEESQL---------------IFRGGE 327 (479)
T ss_pred EEehhHhHHHHHHhCCccceee----echhcccc---eEEeccccceeEEEecccccee---------------eeeCCC
Confidence 99998733 5677778765532 33223333 2446779999999999544321 123555
Q ss_pred cceeEEEEc-CCceEEEEcCCcEEEEECCCCceEEEE-eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCC
Q 046773 295 EFVGRVRVT-SHESAVACTSSRVITFDLRNQGMVLGE-RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDT 372 (453)
Q Consensus 295 ~~v~~v~~s-~~~~~vas~d~tIrlWDl~t~~~~~~~-~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~t 372 (453)
+.+-||+|- .+..+++|+++.|-||++.+.+-+.+. ..|+ + .+.. +.
T Consensus 328 ~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHg--v-----~~~~--------~~---------------- 376 (479)
T KOG0299|consen 328 GSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHG--V-----IPEL--------DP---------------- 376 (479)
T ss_pred CCeeeEEEecccceeeccCCceEEEeeecccCceeEeecccc--c-----cCCc--------cc----------------
Confidence 677888874 555677788899999999987655443 2222 1 0100 00
Q ss_pred CeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCC----eEEEEecccCCceEE--EEecCCCEEEEE
Q 046773 373 FEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGG----EYMYSFRERIGEEVI--AFVGDDRHVAAS 441 (453)
Q Consensus 373 g~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG----~~l~tL~gh~~~~V~--a~s~d~~~lasg 441 (453)
..++.|+.+++.++....++++|. |.||||-+++| +.++.|+ -.+. |+ +|+++|++|+.|
T Consensus 377 -------~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~Gf-VNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 377 -------VNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGF-VNSLAFSNSGKRIVAG 443 (479)
T ss_pred -------cccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccE-EEEEEEccCCCEEEEe
Confidence 012357888888888777777776 99999999998 4455554 2345 88 567899977665
No 81
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.84 E-value=1.3e-20 Score=186.54 Aligned_cols=224 Identities=14% Similarity=0.145 Sum_probs=169.9
Q ss_pred EEEEEE--cCCeEEEEeCCCCEEEEEeecCC---cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCC
Q 046773 195 VSGIII--TDSQLIFATLDGDIHVAVIDDVA---NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQA 269 (453)
Q Consensus 195 V~~i~f--~g~~LasgS~D~tIkvWd~~~~g---~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~t 269 (453)
|..+.| +.+.|++|+.|.-|++|++.... +.++.+..+.+. .++|+++++. +.+.|.|++++|||+..
T Consensus 178 v~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it----~~d~d~~~~~---~iAas~d~~~r~Wnvd~ 250 (459)
T KOG0288|consen 178 VHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNIT----SIDFDSDNKH---VIAASNDKNLRLWNVDS 250 (459)
T ss_pred cceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcc----eeeecCCCce---EEeecCCCceeeeeccc
Confidence 334554 23689999999999999997622 345555444443 4899999986 55678999999999988
Q ss_pred CcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEE-eeccCCeEEEEEEecC
Q 046773 270 EEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGE-RGYGRGLYVTSVDVNA 346 (453)
Q Consensus 270 g~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~-~g~~~~~~v~~~~~~g 346 (453)
.+.. +||.||++.|.++.|.-.. .++++.|.|||+|||....|.++. .+. .+..+...+
T Consensus 251 ~r~~--------------~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S----~cnDI~~~~ 312 (459)
T KOG0288|consen 251 LRLR--------------HTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGS----QCNDIVCSI 312 (459)
T ss_pred hhhh--------------hhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccc----cccceEecc
Confidence 8743 6788999999999886332 455677899999999998887764 221 122222223
Q ss_pred CEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEeccc--
Q 046773 347 EAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRER-- 423 (453)
Q Consensus 347 ~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh-- 423 (453)
..++|+-.|+ ++|.||..++.++.++.++. .|.++..++++..+++++- .++++-|+.+-+..+++...
T Consensus 313 ~~~~SgH~Dk-------kvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~ 384 (459)
T KOG0288|consen 313 SDVISGHFDK-------KVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGF 384 (459)
T ss_pred eeeeeccccc-------ceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccc
Confidence 3455555566 99999999999998888776 7889999999999998875 99999999998888877532
Q ss_pred ---CCceEE-EEecCCCEEEEE-eCCcEEEEecC
Q 046773 424 ---IGEEVI-AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 424 ---~~~~V~-a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
.++ -. .||||+.++++| .|+.|+||++.
T Consensus 385 k~asDw-trvvfSpd~~YvaAGS~dgsv~iW~v~ 417 (459)
T KOG0288|consen 385 KCASDW-TRVVFSPDGSYVAAGSADGSVYIWSVF 417 (459)
T ss_pred cccccc-ceeEECCCCceeeeccCCCcEEEEEcc
Confidence 122 22 689999999999 99999999863
No 82
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=1.4e-19 Score=174.16 Aligned_cols=267 Identities=16% Similarity=0.173 Sum_probs=190.2
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecCC--cceEEe
Q 046773 154 DLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDVA--NETRTA 229 (453)
Q Consensus 154 ~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g--~~~~~~ 229 (453)
...|+|.-.|+|++. +.++.|.||..+ |.-++.+ -..+.++|.|.|.+||.+++ | +.++++
T Consensus 124 tsrivssFk~~t~~~------~lvre~~GHkDG--------iW~Vaa~~tqpi~gtASADhTA~iWs~Es-g~CL~~Y~G 188 (481)
T KOG0300|consen 124 TSRIVSSFKDGTVKF------RLVRELEGHKDG--------IWHVAADSTQPICGTASADHTARIWSLES-GACLATYTG 188 (481)
T ss_pred cchheeeecCCceeE------eehhhhcccccc--------eeeehhhcCCcceeecccccceeEEeecc-ccceeeecc
Confidence 356888888888763 557778887653 3334433 23688999999999999998 5 778899
Q ss_pred eecceecCceEEEEeCCCceeeEEEEeeCCCeEEEee------CCCCcEEecccc-------------c------CCcce
Q 046773 230 HFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWD------RQAEEVFVGGDL-------------T------DHNTV 284 (453)
Q Consensus 230 ~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD------~~tg~~~~g~~l-------------~------~~~~v 284 (453)
|+|.|. .|.|++.+.. ++++|.|.|..||- +.....-.+|+- . +..++
T Consensus 189 H~GSVN----sikfh~s~~L---~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~ti 261 (481)
T KOG0300|consen 189 HTGSVN----SIKFHNSGLL---LLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTI 261 (481)
T ss_pred ccccee----eEEeccccce---EEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCcee
Confidence 999876 5999999885 78999999999997 222111111100 0 00011
Q ss_pred ee-eeeeeeeccceeEEEE--cCCceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccC
Q 046773 285 MG-WRMLTEFTEFVGRVRV--TSHESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQN 361 (453)
Q Consensus 285 ~~-w~~l~~h~~~v~~v~~--s~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~ 361 (453)
+. +-.|++|.+.|.+... .++..+.+|.|.|.-|||++++..+..+.||.+...=.+-.|....+++.|.|.
T Consensus 262 RvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDt----- 336 (481)
T KOG0300|consen 262 RVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDT----- 336 (481)
T ss_pred eeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCc-----
Confidence 10 1236788777765432 345567789999999999999988777888877665455567667778888888
Q ss_pred cceEEEEEcCCC-eeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCC-eEEEEecccCCceEE--EEecCCC
Q 046773 362 RRLAIVRRVDTF-EEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGG-EYMYSFRERIGEEVI--AFVGDDR 436 (453)
Q Consensus 362 ~~~i~Iw~~~tg-~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG-~~l~tL~gh~~~~V~--a~s~d~~ 436 (453)
+.|+||.... +.+..|++|.+.|.+++|..++ .++++++ .||||||+..= ..|.|++ ++..++ +++-..+
T Consensus 337 --TFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR--tdS~~NRvavs~g~~ 411 (481)
T KOG0300|consen 337 --TFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR--TDSPANRVAVSKGHP 411 (481)
T ss_pred --eeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee--cCCccceeEeecCCc
Confidence 9999998732 4577789999999999988764 4677787 99999999863 4566664 344366 5556666
Q ss_pred EEEEE-eCCcEEEEecC
Q 046773 437 HVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 437 ~lasg-~D~~IklWDl~ 452 (453)
+||.- ....|+|+|+.
T Consensus 412 iIAiPhDNRqvRlfDln 428 (481)
T KOG0300|consen 412 IIAIPHDNRQVRLFDLN 428 (481)
T ss_pred eEEeccCCceEEEEecC
Confidence 77776 56789999974
No 83
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=3.4e-18 Score=164.91 Aligned_cols=230 Identities=14% Similarity=0.161 Sum_probs=169.9
Q ss_pred eEEEEEEc--CCeEEEEeCCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeC--CCeEEEeeCCC
Q 046773 194 AVSGIIIT--DSQLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLA--GRAFHIWDRQA 269 (453)
Q Consensus 194 ~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~--D~tIrvWD~~t 269 (453)
.|.+|.|+ |..|+++|.|.+++|+|... |.+..+.+.-.- ....+.|...... +..+|. |.|||.-++.+
T Consensus 16 ~i~sl~fs~~G~~litss~dDsl~LYd~~~-g~~~~ti~skky--G~~~~~Fth~~~~---~i~sStk~d~tIryLsl~d 89 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSSEDDSLRLYDSLS-GKQVKTINSKKY--GVDLACFTHHSNT---VIHSSTKEDDTIRYLSLHD 89 (311)
T ss_pred ceeEEEecCCCCEEEEecCCCeEEEEEcCC-CceeeEeecccc--cccEEEEecCCce---EEEccCCCCCceEEEEeec
Confidence 57788885 77899999999999999887 533333222110 0012455444332 333454 99999999999
Q ss_pred CcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCC
Q 046773 270 EEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAE 347 (453)
Q Consensus 270 g~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~ 347 (453)
.+.+ +.+.||...|+++.++|.+ .+++|-|.+|||||+++.+|...+. .....+.+|+|+|-
T Consensus 90 Nkyl--------------RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~--~~~~pi~AfDp~GL 153 (311)
T KOG1446|consen 90 NKYL--------------RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN--LSGRPIAAFDPEGL 153 (311)
T ss_pred CceE--------------EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe--cCCCcceeECCCCc
Confidence 8843 3467899999999999744 4555678999999999888765442 22345688999888
Q ss_pred EEEEEeCCCccccCcceEEEEEcCCC--eeEEEEEec---CCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEec
Q 046773 348 AYIVVENRELENQNRRLAIVRRVDTF--EEVCRFSLR---ADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFR 421 (453)
Q Consensus 348 ~l~s~s~dg~~~~~~~~i~Iw~~~tg--~~v~~l~~~---~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~ 421 (453)
.+|++.... .|+|+|+... .+-.++... ......+-|+++|++++.+.. +.+.|-|.-+|..+.++.
T Consensus 154 ifA~~~~~~-------~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs 226 (311)
T KOG1446|consen 154 IFALANGSE-------LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFS 226 (311)
T ss_pred EEEEecCCC-------eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEe
Confidence 888887777 8999998753 344555443 122457889999999998888 999999999999999999
Q ss_pred ccCCce---EE-EEecCCCEEEEE-eCCcEEEEecC
Q 046773 422 ERIGEE---VI-AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 422 gh~~~~---V~-a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
++.... +. +|+||++.|.+| .||+|.+|++.
T Consensus 227 ~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~ 262 (311)
T KOG1446|consen 227 GYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLE 262 (311)
T ss_pred eccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcC
Confidence 886552 23 688999999999 99999999974
No 84
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.83 E-value=5.5e-20 Score=177.30 Aligned_cols=228 Identities=15% Similarity=0.134 Sum_probs=173.5
Q ss_pred EEEcCCeEEEEeCCCCEEEEEeecCC-c-ceE--Eeeecc-eecCce-EEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc
Q 046773 198 IIITDSQLIFATLDGDIHVAVIDDVA-N-ETR--TAHFGS-VMDDGV-LIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE 271 (453)
Q Consensus 198 i~f~g~~LasgS~D~tIkvWd~~~~g-~-~~~--~~~~~~-v~~~~~-~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~ 271 (453)
+++||..|+|||.|+-|.|||..+ | + .-+ +....- +..+.+ .+.||-|+.+ |||||-|+.||||-++||+
T Consensus 221 FSPDgqyLvsgSvDGFiEVWny~~-GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEM---lAsGsqDGkIKvWri~tG~ 296 (508)
T KOG0275|consen 221 FSPDGQYLVSGSVDGFIEVWNYTT-GKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEM---LASGSQDGKIKVWRIETGQ 296 (508)
T ss_pred eCCCCceEeeccccceeeeehhcc-chhhhhhhhhhhcceeecccceEEEeecccHHH---hhccCcCCcEEEEEEecch
Confidence 556788999999999999999887 5 1 111 111110 112333 3899999986 8999999999999999999
Q ss_pred EEecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEE
Q 046773 272 VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAY 349 (453)
Q Consensus 272 ~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l 349 (453)
|++. .=+.|+.-|.+++|+-++ ++++|-|.+||+--+.+|+|++.++||..-+.-.-|..+|..+
T Consensus 297 ClRr-------------FdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~i 363 (508)
T KOG0275|consen 297 CLRR-------------FDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHI 363 (508)
T ss_pred HHHH-------------hhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeE
Confidence 6531 124788889999998654 5667788999999999999988778876433334478889999
Q ss_pred EEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCC--eeEEEEee-CCCeEEEEeC-CeEEEEECCCCeEEEEeccc--
Q 046773 350 IVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADR--NVNVMGCM-NQGYALMCVE-GVIRVWEVEGGEYMYSFRER-- 423 (453)
Q Consensus 350 ~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~--v~~~~~~~-~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh-- 423 (453)
+++|+|+ ++|||+..|++|+.+|..-+.. |.++...| ++..++.|.- +||.|=++. |+.++++..-
T Consensus 364 isaSsDg-------tvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkR 435 (508)
T KOG0275|consen 364 ISASSDG-------TVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKR 435 (508)
T ss_pred EEecCCc-------cEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCc
Confidence 9999999 9999999999999988654422 66666555 6778888887 999999985 8888888532
Q ss_pred -CCceEE-EEecCCCEEEEE-eCCcEEEEe
Q 046773 424 -IGEEVI-AFVGDDRHVAAS-CGTNIHLWD 450 (453)
Q Consensus 424 -~~~~V~-a~s~d~~~lasg-~D~~IklWD 450 (453)
.+..|. +++|.|.+|-+. +|+.+..+.
T Consensus 436 EgGdFi~~~lSpkGewiYcigED~vlYCF~ 465 (508)
T KOG0275|consen 436 EGGDFINAILSPKGEWIYCIGEDGVLYCFS 465 (508)
T ss_pred cCCceEEEEecCCCcEEEEEccCcEEEEEE
Confidence 122366 678999999776 998877654
No 85
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=1.8e-18 Score=166.22 Aligned_cols=255 Identities=16% Similarity=0.227 Sum_probs=181.3
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc-CCeEEEEeCCCCEEEEEeecCC
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT-DSQLIFATLDGDIHVAVIDDVA 223 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~-g~~LasgS~D~tIkvWd~~~~g 223 (453)
|..+.|++ ..|+.+|+|+++|++|+.+.+....|+ |.. .+-..+|- ...+++|+.|+.||+.|+++ +
T Consensus 16 IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~--------plL~c~F~d~~~~~~G~~dg~vr~~Dln~-~ 85 (323)
T KOG1036|consen 16 ISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGA--------PLLDCAFADESTIVTGGLDGQVRRYDLNT-G 85 (323)
T ss_pred eeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCC--------ceeeeeccCCceEEEeccCceEEEEEecC-C
Confidence 78999995 466677799999999999998777776 332 46667775 46799999999999999998 4
Q ss_pred -cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEE
Q 046773 224 -NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRV 302 (453)
Q Consensus 224 -~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~ 302 (453)
...+..|...+. .|.+++--. .++|||+|++||+||.+..... +. ..-...|.++.+
T Consensus 86 ~~~~igth~~~i~----ci~~~~~~~---~vIsgsWD~~ik~wD~R~~~~~-~~--------------~d~~kkVy~~~v 143 (323)
T KOG1036|consen 86 NEDQIGTHDEGIR----CIEYSYEVG---CVISGSWDKTIKFWDPRNKVVV-GT--------------FDQGKKVYCMDV 143 (323)
T ss_pred cceeeccCCCceE----EEEeeccCC---eEEEcccCccEEEEeccccccc-cc--------------cccCceEEEEec
Confidence 233334544332 356654321 3789999999999999874421 10 011246888888
Q ss_pred cCCceEEEEcCCcEEEEECCCCceEEEE--eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeE----
Q 046773 303 TSHESAVACTSSRVITFDLRNQGMVLGE--RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEV---- 376 (453)
Q Consensus 303 s~~~~~vas~d~tIrlWDl~t~~~~~~~--~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v---- 376 (453)
.++.+++++.+..|.+|||++.....+. ..-.-+....++-|++++++++|-+| -+-|=..+.-++.
T Consensus 144 ~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieG-------RVavE~~d~s~~~~skk 216 (323)
T KOG1036|consen 144 SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEG-------RVAVEYFDDSEEAQSKK 216 (323)
T ss_pred cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecc-------eEEEEccCCchHHhhhc
Confidence 9999999999999999999987543321 11111223444557889999999999 6666566654322
Q ss_pred EEEEecCCC---------eeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE
Q 046773 377 CRFSLRADR---------NVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS 441 (453)
Q Consensus 377 ~~l~~~~~~---------v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg 441 (453)
..|..|+.. |.++.|+|-.+.++++++ |.|-+||+.+.+.|..|..-... |- +|+-||..||.+
T Consensus 217 yaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~S-I~slsfs~dG~~LAia 292 (323)
T KOG1036|consen 217 YAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETS-ISSLSFSMDGSLLAIA 292 (323)
T ss_pred eeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCc-eEEEEeccCCCeEEEE
Confidence 234444311 667888887777888776 99999999999999998766555 54 777899999876
No 86
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.1e-19 Score=170.52 Aligned_cols=228 Identities=15% Similarity=0.162 Sum_probs=156.5
Q ss_pred EEEEEecC---CEEEEEeCCCcEEEEECCCC-eEEEEecCCCCCccccccceEEEEEEc---CCeEEEEeCCCCEEEEEe
Q 046773 147 CRCLTLSD---LYLACGFADGAVRLFDLTTR-LHVRTFRPQHSDRLGQFSRAVSGIIIT---DSQLIFATLDGDIHVAVI 219 (453)
Q Consensus 147 v~~lafs~---~~LaSGS~D~TIrlWD~~tg-~~~~tl~gh~~~~~~~~s~~V~~i~f~---g~~LasgS~D~tIkvWd~ 219 (453)
...++.++ +.+++++.||++||||+.-. ..++.|+.|..+ |-++... .+.++++|.|+|||+|+-
T Consensus 63 LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~E--------V~Svdwn~~~r~~~ltsSWD~TiKLW~~ 134 (311)
T KOG0277|consen 63 LFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKRE--------VYSVDWNTVRRRIFLTSSWDGTIKLWDP 134 (311)
T ss_pred eeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhh--------eEEeccccccceeEEeeccCCceEeecC
Confidence 44566665 58999999999999996433 357778877654 4445433 456778899999999997
Q ss_pred ecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCC-CcEEecccccCCcceeeeeeeeeeccce
Q 046773 220 DDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQA-EEVFVGGDLTDHNTVMGWRMLTEFTEFV 297 (453)
Q Consensus 220 ~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~t-g~~~~g~~l~~~~~v~~w~~l~~h~~~v 297 (453)
+-+. ++|+.+|..-|. ...|+|.-. +.++|+|.|++.||||++. |+.. .+..|...+
T Consensus 135 ~r~~Sv~Tf~gh~~~Iy----~a~~sp~~~--nlfas~Sgd~~l~lwdvr~~gk~~---------------~i~ah~~Ei 193 (311)
T KOG0277|consen 135 NRPNSVQTFNGHNSCIY----QAAFSPHIP--NLFASASGDGTLRLWDVRSPGKFM---------------SIEAHNSEI 193 (311)
T ss_pred CCCcceEeecCCccEEE----EEecCCCCC--CeEEEccCCceEEEEEecCCCcee---------------EEEecccee
Confidence 7633 677777765554 368998755 3588999999999999986 4421 133455555
Q ss_pred eEEEEc---CCceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecC---CEEEEEeCCCccccCcceEEEEEcC
Q 046773 298 GRVRVT---SHESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNA---EAYIVVENRELENQNRRLAIVRRVD 371 (453)
Q Consensus 298 ~~v~~s---~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g---~~l~s~s~dg~~~~~~~~i~Iw~~~ 371 (453)
.+.-++ +.-++.++.|+.||.||+++-+..+-+ ..+|+..|..+.+++ +.|+++|.|- |+|||+..
T Consensus 194 l~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~e-L~gh~~AVRkvk~Sph~~~lLaSasYDm-------T~riw~~~ 265 (311)
T KOG0277|consen 194 LCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFE-LNGHGLAVRKVKFSPHHASLLASASYDM-------TVRIWDPE 265 (311)
T ss_pred EeecccccCCcEEEecCCCceEEEEehhhcccccee-ecCCceEEEEEecCcchhhHhhhccccc-------eEEecccc
Confidence 555443 333455567899999999986544332 244566777776665 4689999999 99999987
Q ss_pred CC-eeEEEEEecCCCeeEEEEee-CCCeEEEEeC-CeEEEEEC
Q 046773 372 TF-EEVCRFSLRADRNVNVMGCM-NQGYALMCVE-GVIRVWEV 411 (453)
Q Consensus 372 tg-~~v~~l~~~~~~v~~~~~~~-~~~~lls~s~-~tIrlWD~ 411 (453)
.+ .++.+...|..=+..+-+++ +++++++++- ..++||+.
T Consensus 266 ~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 266 RQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 44 23333344443344444444 4677777775 99999984
No 87
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=4.8e-19 Score=178.57 Aligned_cols=227 Identities=15% Similarity=0.168 Sum_probs=170.8
Q ss_pred EEEEEe--cCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE---cCCeEEEEeCCCCEEEEEeec
Q 046773 147 CRCLTL--SDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII---TDSQLIFATLDGDIHVAVIDD 221 (453)
Q Consensus 147 v~~laf--s~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f---~g~~LasgS~D~tIkvWd~~~ 221 (453)
|+++.| +|++||.|..-|-|||+|+.+..-+|+|.+|.. .|.-+.| ++..+++||.|+.+|+||+++
T Consensus 71 v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~a--------pv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~ 142 (487)
T KOG0310|consen 71 VYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQA--------PVHVTKFSPQDNTMLVSGSDDKVVKYWDLST 142 (487)
T ss_pred eeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccC--------ceeEEEecccCCeEEEecCCCceEEEEEcCC
Confidence 667777 488999999999999999988888999999865 3444555 356799999999999999987
Q ss_pred CC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc--EEecccccCCcceeeeeeeeeeccce
Q 046773 222 VA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE--VFVGGDLTDHNTVMGWRMLTEFTEFV 297 (453)
Q Consensus 222 ~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~--~~~g~~l~~~~~v~~w~~l~~h~~~v 297 (453)
+ +..+.+|++.|. ..+++|-..- +++|||.|++||+||+++.. .+ --.|-.||
T Consensus 143 -a~v~~~l~~htDYVR----~g~~~~~~~h--ivvtGsYDg~vrl~DtR~~~~~v~----------------elnhg~pV 199 (487)
T KOG0310|consen 143 -AYVQAELSGHTDYVR----CGDISPANDH--IVVTGSYDGKVRLWDTRSLTSRVV----------------ELNHGCPV 199 (487)
T ss_pred -cEEEEEecCCcceeE----eeccccCCCe--EEEecCCCceEEEEEeccCCceeE----------------EecCCCce
Confidence 4 335667877764 3567776443 48899999999999998863 21 12566789
Q ss_pred eEEEEcCCc-eEEEEcCCcEEEEECCCCceEEEEee-ccCCeEEEEE--EecCCEEEEEeCCCccccCcceEEEEEcCCC
Q 046773 298 GRVRVTSHE-SAVACTSSRVITFDLRNQGMVLGERG-YGRGLYVTSV--DVNAEAYIVVENRELENQNRRLAIVRRVDTF 373 (453)
Q Consensus 298 ~~v~~s~~~-~~vas~d~tIrlWDl~t~~~~~~~~g-~~~~~~v~~~--~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg 373 (453)
-.|.+-|.+ ++++++...||+||+.+|+.+.+... |.. .|+|+ .-++.+|++++-|+ .+||++..+.
T Consensus 200 e~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~K--tVTcL~l~s~~~rLlS~sLD~-------~VKVfd~t~~ 270 (487)
T KOG0310|consen 200 ESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNK--TVTCLRLASDSTRLLSGSLDR-------HVKVFDTTNY 270 (487)
T ss_pred eeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccc--eEEEEEeecCCceEeeccccc-------ceEEEEccce
Confidence 998887764 44445557899999999877666544 443 45565 45568999999999 9999998888
Q ss_pred eeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCC
Q 046773 374 EEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGG 414 (453)
Q Consensus 374 ~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG 414 (453)
+.+..+... ..|.++..++++..++.+-+ |.+-+=+....
T Consensus 271 Kvv~s~~~~-~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k 311 (487)
T KOG0310|consen 271 KVVHSWKYP-GPVLSIAVSPDDQTVVIGMSNGLVSIRRREVK 311 (487)
T ss_pred EEEEeeecc-cceeeEEecCCCceEEEecccceeeeehhhcc
Confidence 888888764 45888888888888887765 66654454443
No 88
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.83 E-value=3.6e-18 Score=160.98 Aligned_cols=266 Identities=14% Similarity=0.115 Sum_probs=193.2
Q ss_pred EEEEEec--CCEEEEEeCCCcEEEEECCCCeEEEEe--cCCCCCccccccceEEEEEEc---CCeEEEEeCCCCEEEEEe
Q 046773 147 CRCLTLS--DLYLACGFADGAVRLFDLTTRLHVRTF--RPQHSDRLGQFSRAVSGIIIT---DSQLIFATLDGDIHVAVI 219 (453)
Q Consensus 147 v~~lafs--~~~LaSGS~D~TIrlWD~~tg~~~~tl--~gh~~~~~~~~s~~V~~i~f~---g~~LasgS~D~tIkvWd~ 219 (453)
|.+++++ +.+||+||.|+|+++|+++-.+.+..+ +||+. .|.-++.+ ++.++++|.|++|++||+
T Consensus 23 v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~--------svdql~w~~~~~d~~atas~dk~ir~wd~ 94 (313)
T KOG1407|consen 23 VHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTD--------SVDQLCWDPKHPDLFATASGDKTIRIWDI 94 (313)
T ss_pred ceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCc--------chhhheeCCCCCcceEEecCCceEEEEEe
Confidence 6678875 689999999999999999988655443 45543 34445554 678999999999999999
Q ss_pred ecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeE
Q 046773 220 DDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGR 299 (453)
Q Consensus 220 ~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~ 299 (453)
.. +..+.+... ..+...+..+|+|.+ ++.|+.|..|-.-|+++-+...- ......++-
T Consensus 95 r~-~k~~~~i~~---~~eni~i~wsp~g~~---~~~~~kdD~it~id~r~~~~~~~---------------~~~~~e~ne 152 (313)
T KOG1407|consen 95 RS-GKCTARIET---KGENINITWSPDGEY---IAVGNKDDRITFIDARTYKIVNE---------------EQFKFEVNE 152 (313)
T ss_pred cc-CcEEEEeec---cCcceEEEEcCCCCE---EEEecCcccEEEEEecccceeeh---------------hcccceeee
Confidence 87 423332221 112235899999997 67889999999999988763210 011234555
Q ss_pred EEEc-CCce-EEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEE
Q 046773 300 VRVT-SHES-AVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVC 377 (453)
Q Consensus 300 v~~s-~~~~-~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~ 377 (453)
+.++ ++.+ ++..+-++|.|-.-..-+-+..+..|.....+..|+|+|+++++||+|. .+.+||++.--|++
T Consensus 153 ~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADA-------lvSLWD~~ELiC~R 225 (313)
T KOG1407|consen 153 ISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADA-------LVSLWDVDELICER 225 (313)
T ss_pred eeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccc-------eeeccChhHhhhhe
Confidence 5554 2334 4445558888765554333334466776777777899999999999999 99999999877888
Q ss_pred EEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-e---C------C
Q 046773 378 RFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-C---G------T 444 (453)
Q Consensus 378 ~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~---D------~ 444 (453)
.++-.+-.||.+.|+-++++|+++|. ..|-|=+++||..+..++ +.+. .. +..|....||=+ . + +
T Consensus 226 ~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~-t~tVAWHPk~~LLAyA~ddk~~d~~reag 303 (313)
T KOG1407|consen 226 CISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGP-TFTVAWHPKRPLLAYACDDKDGDSNREAG 303 (313)
T ss_pred eeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCC-ceeEEecCCCceeeEEecCCCCccccccc
Confidence 88776666999999999999998887 999999999999888775 3344 33 667888888744 2 2 5
Q ss_pred cEEEEec
Q 046773 445 NIHLWDF 451 (453)
Q Consensus 445 ~IklWDl 451 (453)
+|||+-+
T Consensus 304 ~vKiFG~ 310 (313)
T KOG1407|consen 304 TVKIFGL 310 (313)
T ss_pred eeEEecC
Confidence 8888754
No 89
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=3.8e-19 Score=176.11 Aligned_cols=236 Identities=13% Similarity=0.098 Sum_probs=171.9
Q ss_pred CCCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEE--EEcCCeEEEEeCCC
Q 046773 137 SDVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGI--IITDSQLIFATLDG 212 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i--~f~g~~LasgS~D~ 212 (453)
.||.+| |..+.||| ++|++++.|..+++||+.||++++.+...++ + ++.+. .+||..+++||.|+
T Consensus 266 vgh~~~----V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~--~-----S~~sc~W~pDg~~~V~Gs~dr 334 (519)
T KOG0293|consen 266 VGHSQP----VSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLG--F-----SVSSCAWCPDGFRFVTGSPDR 334 (519)
T ss_pred ecccCc----eEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcC--C-----CcceeEEccCCceeEecCCCC
Confidence 389976 77889987 5999999999999999999999988753221 1 33444 46888999999999
Q ss_pred CEEEEEeecCCcceEEeee-cceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeee
Q 046773 213 DIHVAVIDDVANETRTAHF-GSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLT 291 (453)
Q Consensus 213 tIkvWd~~~~g~~~~~~~~-~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~ 291 (453)
+|..||.+..-...-++.. ..| .-++.++||++ +++-..|+.|++.+.++..... +.
T Consensus 335 ~i~~wdlDgn~~~~W~gvr~~~v----~dlait~Dgk~---vl~v~~d~~i~l~~~e~~~dr~---------------li 392 (519)
T KOG0293|consen 335 TIIMWDLDGNILGNWEGVRDPKV----HDLAITYDGKY---VLLVTVDKKIRLYNREARVDRG---------------LI 392 (519)
T ss_pred cEEEecCCcchhhccccccccee----EEEEEcCCCcE---EEEEecccceeeechhhhhhhc---------------cc
Confidence 9999998861111111100 011 13788999998 3444589999999998865210 11
Q ss_pred eeccceeEEEEcCCce-EEEE-cCCcEEEEECCCCceEEEEeeccCCeEE--EEEEecC-CEEEEEeCCCccccCcceEE
Q 046773 292 EFTEFVGRVRVTSHES-AVAC-TSSRVITFDLRNQGMVLGERGYGRGLYV--TSVDVNA-EAYIVVENRELENQNRRLAI 366 (453)
Q Consensus 292 ~h~~~v~~v~~s~~~~-~vas-~d~tIrlWDl~t~~~~~~~~g~~~~~~v--~~~~~~g-~~l~s~s~dg~~~~~~~~i~ 366 (453)
.-..++.+.++|.++. ++.. .+..|+|||++....+....||.++.++ .||.--. ..++|||.|+ .|.
T Consensus 393 se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~-------kvy 465 (519)
T KOG0293|consen 393 SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDS-------KVY 465 (519)
T ss_pred cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCc-------eEE
Confidence 1225788889987764 4444 4679999999976555555788776665 3454322 5678888888 999
Q ss_pred EEEcCCCeeEEEEEecCCCeeEEEEeeC-CCeEEEEeC-CeEEEEECC
Q 046773 367 VRRVDTFEEVCRFSLRADRNVNVMGCMN-QGYALMCVE-GVIRVWEVE 412 (453)
Q Consensus 367 Iw~~~tg~~v~~l~~~~~~v~~~~~~~~-~~~lls~s~-~tIrlWD~~ 412 (453)
||+-.+|..+.++++|...|..++..|. ...++++++ ||||||-..
T Consensus 466 IWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 466 IWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred EEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 9999999999999999988989998885 455566677 999999765
No 90
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=4.6e-18 Score=164.02 Aligned_cols=269 Identities=12% Similarity=0.158 Sum_probs=173.5
Q ss_pred CCCCCCCCeEEEEEEec--CCEEEEEeCCCcEEEEECCCCe-----EEEE-ecCCCCCccccccceEEEEEEcCC---eE
Q 046773 137 SDVDNPDGLTCRCLTLS--DLYLACGFADGAVRLFDLTTRL-----HVRT-FRPQHSDRLGQFSRAVSGIIITDS---QL 205 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs--~~~LaSGS~D~TIrlWD~~tg~-----~~~t-l~gh~~~~~~~~s~~V~~i~f~g~---~L 205 (453)
+||. +. |+|++|+ |++|||.+.|++|||||+...+ |+|. +...| -..+.|.++ .+
T Consensus 83 KgH~--~~--vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dh----------pT~V~FapDc~s~v 148 (420)
T KOG2096|consen 83 KGHK--KE--VTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDH----------PTRVVFAPDCKSVV 148 (420)
T ss_pred hccC--Cc--eeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCC----------ceEEEECCCcceEE
Confidence 5998 45 7888886 6899999999999999998753 3322 21111 123455433 45
Q ss_pred EEEeCCCCEEEEEeec--CC--cceE---------EeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcE
Q 046773 206 IFATLDGDIHVAVIDD--VA--NETR---------TAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEV 272 (453)
Q Consensus 206 asgS~D~tIkvWd~~~--~g--~~~~---------~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~ 272 (453)
++.-...+++|+-... .| .++. +.|...+. .+.....+++ |+|+|.|.+|.|||++ |+.
T Consensus 149 v~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i----~iGiA~~~k~---imsas~dt~i~lw~lk-Gq~ 220 (420)
T KOG2096|consen 149 VSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDII----NIGIAGNAKY---IMSASLDTKICLWDLK-GQL 220 (420)
T ss_pred EEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceE----EEeecCCceE---EEEecCCCcEEEEecC-Cce
Confidence 6666667788876532 12 1111 11221221 1344455665 8899999999999998 775
Q ss_pred EecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEcCC--cEEEEECC---CCc-----eEEEEeeccCCeEEEEE
Q 046773 273 FVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSS--RVITFDLR---NQG-----MVLGERGYGRGLYVTSV 342 (453)
Q Consensus 273 ~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~d~--tIrlWDl~---t~~-----~~~~~~g~~~~~~v~~~ 342 (453)
+.- -+. +++.. ...++||++.++++... .|++|.+- .|. ....+.||...+...+|
T Consensus 221 L~~---idt------nq~~n-----~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aF 286 (420)
T KOG2096|consen 221 LQS---IDT------NQSSN-----YDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAF 286 (420)
T ss_pred eee---ecc------ccccc-----cceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeee
Confidence 420 000 11111 22467999988887654 59999973 221 12234677666555667
Q ss_pred EecCCEEEEEeCCCccccCcceEEEEEcCCC----e---eEEEE--Eec--CCCeeEEEEeeCCCeEEEEeCCeEEEEEC
Q 046773 343 DVNAEAYIVVENRELENQNRRLAIVRRVDTF----E---EVCRF--SLR--ADRNVNVMGCMNQGYALMCVEGVIRVWEV 411 (453)
Q Consensus 343 ~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg----~---~v~~l--~~~--~~~v~~~~~~~~~~~lls~s~~tIrlWD~ 411 (453)
+++.++.+++|.|| ++||||.+-. + .+.+. .++ ......+..||++..++.+.+.++++...
T Consensus 287 sn~S~r~vtvSkDG-------~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~s 359 (420)
T KOG2096|consen 287 SNSSTRAVTVSKDG-------KWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFAS 359 (420)
T ss_pred CCCcceeEEEecCC-------cEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEc
Confidence 77788999999999 9999998732 1 11111 111 12233677788888777666699999999
Q ss_pred CCCeEEEEecc-cCCceEE--EEecCCCEEEEEeCCcEEEE
Q 046773 412 EGGEYMYSFRE-RIGEEVI--AFVGDDRHVAASCGTNIHLW 449 (453)
Q Consensus 412 ~tG~~l~tL~g-h~~~~V~--a~s~d~~~lasg~D~~IklW 449 (453)
++|+-+-+|+. |.+. |. ++++||++|++.-|.-++|.
T Consensus 360 e~g~~~~~~e~~h~~~-Is~is~~~~g~~~atcGdr~vrv~ 399 (420)
T KOG2096|consen 360 EDGKDYPELEDIHSTT-ISSISYSSDGKYIATCGDRYVRVI 399 (420)
T ss_pred ccCccchhHHHhhcCc-eeeEEecCCCcEEeeecceeeeee
Confidence 99988777754 6555 76 66799999998777777764
No 91
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=2.5e-20 Score=194.67 Aligned_cols=245 Identities=16% Similarity=0.148 Sum_probs=192.0
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEE--EcCCeEEEEeCCCCEEEEEeecCC-cceEEeeec
Q 046773 156 YLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGII--ITDSQLIFATLDGDIHVAVIDDVA-NETRTAHFG 232 (453)
Q Consensus 156 ~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~--f~g~~LasgS~D~tIkvWd~~~~g-~~~~~~~~~ 232 (453)
++++...+-.+|+||....-|... .|.++. -+++.+++|+.|..+-+|.+..+- +..+.+|..
T Consensus 6 ~~m~~~~~t~Lr~~~~~~~~~hsa--------------av~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hes 71 (825)
T KOG0267|consen 6 FLMKTKRATKLRVWDTREFVAHSA--------------AVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHES 71 (825)
T ss_pred ccceeeeeeccccccchhhhhhhh--------------hhceeeeeccceeeccCCCceeeccccccCCchhheeeccCC
Confidence 455666677788998754433222 233332 246678999999988899886643 555788877
Q ss_pred ceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEE--E
Q 046773 233 SVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAV--A 310 (453)
Q Consensus 233 ~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~v--a 310 (453)
.|. .|.|+++-.. |+.|+.|+|||+||++.+..+ ++|+||...+.+|.|+|=+-+. +
T Consensus 72 pIe----Sl~f~~~E~L---laagsasgtiK~wDleeAk~v--------------rtLtgh~~~~~sv~f~P~~~~~a~g 130 (825)
T KOG0267|consen 72 PIE----SLTFDTSERL---LAAGSASGTIKVWDLEEAKIV--------------RTLTGHLLNITSVDFHPYGEFFASG 130 (825)
T ss_pred cce----eeecCcchhh---hcccccCCceeeeehhhhhhh--------------hhhhccccCcceeeeccceEEeccc
Confidence 664 5899998765 889999999999999988754 5788999999999999876555 4
Q ss_pred EcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEE
Q 046773 311 CTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVM 390 (453)
Q Consensus 311 s~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~ 390 (453)
|.|..+++||++-.+|.++..+|...+.+..|+|+|..++++..|. +++|||...|+.+.+|..|...++++-
T Consensus 131 Stdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~-------tvki~d~~agk~~~ef~~~e~~v~sle 203 (825)
T KOG0267|consen 131 STDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDN-------TVKIWDLTAGKLSKEFKSHEGKVQSLE 203 (825)
T ss_pred cccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcc-------eeeeecccccccccccccccccccccc
Confidence 5678899999998899999888888888888999999998888777 999999999998888888887788888
Q ss_pred EeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-eC
Q 046773 391 GCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CG 443 (453)
Q Consensus 391 ~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D 443 (453)
|+|..-.+..++. +|||+||++|-+.+.....-... |. +|.||++.+.+| ++
T Consensus 204 ~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~-v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 204 FHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDG-VRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred cCchhhhhccCCCCceeeeeccceeEEeeccCCccCC-ceeeeecCCceeeecCchh
Confidence 7776444444555 99999999998888777655666 66 688999999988 44
No 92
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.81 E-value=5.4e-19 Score=169.83 Aligned_cols=203 Identities=12% Similarity=0.151 Sum_probs=149.3
Q ss_pred EEEEE--EcCCeEEEEeCCCCEEEEEeec-----------CC--------cceEEeeecceecCceEEEEeCCCceeeEE
Q 046773 195 VSGII--ITDSQLIFATLDGDIHVAVIDD-----------VA--------NETRTAHFGSVMDDGVLIDFTGCSRYWVGL 253 (453)
Q Consensus 195 V~~i~--f~g~~LasgS~D~tIkvWd~~~-----------~g--------~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~L 253 (453)
+++-+ .||..+|+||.|..|||-|++. .| |+++--|...|. .+.|+|.... |
T Consensus 115 cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn----~l~FHPre~I---L 187 (430)
T KOG0640|consen 115 CRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVN----DLDFHPRETI---L 187 (430)
T ss_pred eeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCccc----ceeecchhhe---E
Confidence 44444 4688999999999999999972 11 233334555543 4899999885 9
Q ss_pred EEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceE-EEEcC-CcEEEEECCCCceEEEE-
Q 046773 254 YAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESA-VACTS-SRVITFDLRNQGMVLGE- 330 (453)
Q Consensus 254 aSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~-vas~d-~tIrlWDl~t~~~~~~~- 330 (453)
+|||.|+|||++|+..-..-+. .+.+ .-+.+|.++.|+|.+.+ +++.| .++||+|+.|-+|-...
T Consensus 188 iS~srD~tvKlFDfsK~saKrA-----------~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan 255 (430)
T KOG0640|consen 188 ISGSRDNTVKLFDFSKTSAKRA-----------FKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN 255 (430)
T ss_pred EeccCCCeEEEEecccHHHHHH-----------HHHh-hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC
Confidence 9999999999999965321000 0111 22468999999987743 34555 78999999999886553
Q ss_pred eeccCCeEEEE--EEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEE-ecC-CCeeEEEEeeCCCeEEEEeC-Ce
Q 046773 331 RGYGRGLYVTS--VDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFS-LRA-DRNVNVMGCMNQGYALMCVE-GV 405 (453)
Q Consensus 331 ~g~~~~~~v~~--~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~-~~~-~~v~~~~~~~~~~~lls~s~-~t 405 (453)
...+|...|++ ++..++.++++|.|| .|||||--.+.|+.++. .|+ ..|.++.|..+++|+++++- .+
T Consensus 256 Pd~qht~ai~~V~Ys~t~~lYvTaSkDG-------~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~ 328 (430)
T KOG0640|consen 256 PDDQHTGAITQVRYSSTGSLYVTASKDG-------AIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDST 328 (430)
T ss_pred cccccccceeEEEecCCccEEEEeccCC-------cEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcce
Confidence 22233344555 567788999999999 99999988888988773 232 34888899999999997765 99
Q ss_pred EEEEECCCCeEEEEeccc
Q 046773 406 IRVWEVEGGEYMYSFRER 423 (453)
Q Consensus 406 IrlWD~~tG~~l~tL~gh 423 (453)
||||.+.||+++.++.|-
T Consensus 329 vkLWEi~t~R~l~~YtGA 346 (430)
T KOG0640|consen 329 VKLWEISTGRMLKEYTGA 346 (430)
T ss_pred eeeeeecCCceEEEEecC
Confidence 999999999999988653
No 93
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.80 E-value=1.5e-17 Score=165.76 Aligned_cols=269 Identities=12% Similarity=0.082 Sum_probs=196.9
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcC--CeEEEEeCCCCEEEEEeecC
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITD--SQLIFATLDGDIHVAVIDDV 222 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g--~~LasgS~D~tIkvWd~~~~ 222 (453)
+.++...+ +.+.||+.|+++-++|..+++.+.+|.||.. .|..+.|.+ +.++++|.|..|+||.+...
T Consensus 222 i~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~k--------ki~~v~~~~~~~~v~~aSad~~i~vws~~~~ 293 (506)
T KOG0289|consen 222 ITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTK--------KITSVKFHKDLDTVITASADEIIRVWSVPLS 293 (506)
T ss_pred eeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcce--------EEEEEEeccchhheeecCCcceEEeeccccc
Confidence 56666666 6899999999999999999999999999875 577777764 56889999999999997542
Q ss_pred C-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEE
Q 046773 223 A-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVR 301 (453)
Q Consensus 223 g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~ 301 (453)
- ....+.|...|. -+..+|.|.+ |.++|.|++.-.-|+++|..+.-++ -....-.+.+.+
T Consensus 294 s~~~~~~~h~~~V~----~ls~h~tgeY---llsAs~d~~w~Fsd~~~g~~lt~vs------------~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 294 SEPTSSRPHEEPVT----GLSLHPTGEY---LLSASNDGTWAFSDISSGSQLTVVS------------DETSDVEYTSAA 354 (506)
T ss_pred cCccccccccccce----eeeeccCCcE---EEEecCCceEEEEEccCCcEEEEEe------------eccccceeEEee
Confidence 1 344556766554 3678899997 7799999999999999998553111 000001256789
Q ss_pred EcCCceEEEE--cCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEE
Q 046773 302 VTSHESAVAC--TSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRF 379 (453)
Q Consensus 302 ~s~~~~~vas--~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l 379 (453)
|+||+++.+. .|+.||+||+.++...-.+.||+..+...+|+-+|-.+++++.|+ .|++||+..-+...++
T Consensus 355 fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~-------~V~lwDLRKl~n~kt~ 427 (506)
T KOG0289|consen 355 FHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDG-------SVKLWDLRKLKNFKTI 427 (506)
T ss_pred EcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCC-------eEEEEEehhhccccee
Confidence 9999987763 578999999998765444566655444444444555678888888 8999999866656666
Q ss_pred EecCC-CeeEEEEeeCCCeEEEEeCCeEEEEECC----CCeEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEec
Q 046773 380 SLRAD-RNVNVMGCMNQGYALMCVEGVIRVWEVE----GGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 380 ~~~~~-~v~~~~~~~~~~~lls~s~~tIrlWD~~----tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl 451 (453)
+.... .+.++.|.+.|.+++++ +.+|+|+-.. .-+|+..+..|.+. .+ .|.-..++++++ .|...+|.-+
T Consensus 428 ~l~~~~~v~s~~fD~SGt~L~~~-g~~l~Vy~~~k~~k~W~~~~~~~~~sg~-st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 428 QLDEKKEVNSLSFDQSGTYLGIA-GSDLQVYICKKKTKSWTEIKELADHSGL-STGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eccccccceeEEEcCCCCeEEee-cceeEEEEEecccccceeeehhhhcccc-cceeeecccceEEeeccchhheEEeec
Confidence 54432 37788888888888766 4455555444 45788888888866 55 455567788988 8998888754
No 94
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.2e-16 Score=148.10 Aligned_cols=279 Identities=14% Similarity=0.128 Sum_probs=191.0
Q ss_pred CCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCcccc---------ccceEEEEEEc--CCeEEEEe
Q 046773 143 DGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQ---------FSRAVSGIIIT--DSQLIFAT 209 (453)
Q Consensus 143 d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~---------~s~~V~~i~f~--g~~LasgS 209 (453)
|+.-|.+++|-| .+.|.||..+|.||---..-..+| .+|......| +..++-+.+++ |..|++||
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r--~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgs 108 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLR--HAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGS 108 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcc--cccccccCCCeEEeeeccccCccEEEEEecCccCeEEecC
Confidence 334489999976 688999999999986432111110 1111111111 11256667664 88999999
Q ss_pred CCCCEEEEEe--ecC---C-cceEEeeecceecCceEEEEeCC----CceeeEEEEee-CCCeEEEeeCCCCcEEecccc
Q 046773 210 LDGDIHVAVI--DDV---A-NETRTAHFGSVMDDGVLIDFTGC----SRYWVGLYAGL-AGRAFHIWDRQAEEVFVGGDL 278 (453)
Q Consensus 210 ~D~tIkvWd~--~~~---g-~~~~~~~~~~v~~~~~~v~Fs~d----g~~~~~LaSgS-~D~tIrvWD~~tg~~~~g~~l 278 (453)
.|++||+--. ++. | .-.+..|.+.+. -++|-.+ |. .|+|++ .|..|-+=|..+|+-|
T Consensus 109 ndk~ik~l~fn~dt~~~~g~dle~nmhdgtir----dl~fld~~~s~~~---il~s~gagdc~iy~tdc~~g~~~----- 176 (350)
T KOG0641|consen 109 NDKTIKVLPFNADTCNATGHDLEFNMHDGTIR----DLAFLDDPESGGA---ILASAGAGDCKIYITDCGRGQGF----- 176 (350)
T ss_pred CCceEEEEecccccccccCcceeeeecCCcee----eeEEecCCCcCce---EEEecCCCcceEEEeecCCCCcc-----
Confidence 9999999644 331 1 111223433332 2566433 33 377765 5888889898888743
Q ss_pred cCCcceeeeeeeeeeccceeEEE-EcCCceEEEEcCCcEEEEECCCCceEEEE--eeccC-----CeEEEEEEecCCEEE
Q 046773 279 TDHNTVMGWRMLTEFTEFVGRVR-VTSHESAVACTSSRVITFDLRNQGMVLGE--RGYGR-----GLYVTSVDVNAEAYI 350 (453)
Q Consensus 279 ~~~~~v~~w~~l~~h~~~v~~v~-~s~~~~~vas~d~tIrlWDl~t~~~~~~~--~g~~~-----~~~v~~~~~~g~~l~ 350 (453)
|.+.+|++.+.++. .++--.+++|-|.|||.|||+-..|+.++ ..|.. .+...+++|+|..++
T Consensus 177 ---------~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~ 247 (350)
T KOG0641|consen 177 ---------HALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLA 247 (350)
T ss_pred ---------eeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceee
Confidence 45678888887764 33433445566789999999998888774 22322 334456788899999
Q ss_pred EEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeE-----EEEecccC
Q 046773 351 VVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEY-----MYSFRERI 424 (453)
Q Consensus 351 s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~-----l~tL~gh~ 424 (453)
++-.|. ...++|+.-+..++.+-.|...++.+.|+|...|+++|+- ..|||=|+.. .. +.....|.
T Consensus 248 sg~~ds-------sc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqg-dla~el~~~vv~ehk 319 (350)
T KOG0641|consen 248 SGHADS-------SCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG-DLAHELPIMVVAEHK 319 (350)
T ss_pred eccCCC-------ceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeeccc-chhhcCceEEEEecc
Confidence 888888 9999999999999998888888999999999999999987 9999999973 22 23344687
Q ss_pred CceEE-EEecCCCEEEEE-eCCcEEEEecC
Q 046773 425 GEEVI-AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 425 ~~~V~-a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
+..|. .+.|.+.-.+|+ .|+++.||-+.
T Consensus 320 dk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 320 DKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred CceEEEEecCccceeeeccCcceEEEeccC
Confidence 77454 567877766666 99999999763
No 95
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.79 E-value=2.1e-17 Score=179.79 Aligned_cols=280 Identities=11% Similarity=0.105 Sum_probs=192.7
Q ss_pred CCCCCCCeEEEEEEec--CCEEEEEe--CCCcEEEEECCCC------------eEEEEecCCCCCccccccceEEEEEE-
Q 046773 138 DVDNPDGLTCRCLTLS--DLYLACGF--ADGAVRLFDLTTR------------LHVRTFRPQHSDRLGQFSRAVSGIII- 200 (453)
Q Consensus 138 gh~~~d~v~v~~lafs--~~~LaSGS--~D~TIrlWD~~tg------------~~~~tl~gh~~~~~~~~s~~V~~i~f- 200 (453)
+|.+ +. |.++..+ +..+|||+ .|++++||+.+.- +.+-++.-|. .+|.++-|
T Consensus 10 ~H~~-~~--IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~--------~sv~CVR~S 78 (942)
T KOG0973|consen 10 NHNE-KS--IFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHD--------GSVNCVRFS 78 (942)
T ss_pred ccCC-ee--EEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeecccc--------CceeEEEEC
Confidence 5752 33 4555554 56999999 9999999996432 2233333332 36777765
Q ss_pred -cCCeEEEEeCCCCEEEEEeec------CC-------------cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCC
Q 046773 201 -TDSQLIFATLDGDIHVAVIDD------VA-------------NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGR 260 (453)
Q Consensus 201 -~g~~LasgS~D~tIkvWd~~~------~g-------------~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~ 260 (453)
||+.||+||.|+-|-||.... .| ..++++|.+.|. -|..+|++.+ |||+|.|+
T Consensus 79 ~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~----Dv~Wsp~~~~---lvS~s~Dn 151 (942)
T KOG0973|consen 79 PDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVL----DVNWSPDDSL---LVSVSLDN 151 (942)
T ss_pred CCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccc----eeccCCCccE---EEEecccc
Confidence 588999999999999999772 11 134666776664 3899999997 89999999
Q ss_pred eEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEE--EcCCcEEEEECCCCceEEEEeeccCC--
Q 046773 261 AFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVA--CTSSRVITFDLRNQGMVLGERGYGRG-- 336 (453)
Q Consensus 261 tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~va--s~d~tIrlWDl~t~~~~~~~~g~~~~-- 336 (453)
+|-|||..|.+++ ..+++|.+.|..|.|+|-+.+.| ++|.+||+|++.+-++.+...++-..
T Consensus 152 sViiwn~~tF~~~--------------~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~ 217 (942)
T KOG0973|consen 152 SVIIWNAKTFELL--------------KVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESP 217 (942)
T ss_pred eEEEEccccceee--------------eeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCC
Confidence 9999999998643 45789999999999999886665 57789999997765565554222111
Q ss_pred ----eEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeC--------C-------Ce
Q 046773 337 ----LYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMN--------Q-------GY 397 (453)
Q Consensus 337 ----~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~--------~-------~~ 397 (453)
.+=.+.+|+|..|+++-+=. ..-.++.|-+-++-..-..|.+|...+.-+.|.|- | -|
T Consensus 218 ~~T~f~RlSWSPDG~~las~nA~n---~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y 294 (942)
T KOG0973|consen 218 LTTFFLRLSWSPDGHHLASPNAVN---GGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYY 294 (942)
T ss_pred CcceeeecccCCCcCeecchhhcc---CCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcce
Confidence 12245678899888763321 11237777665555555667777766777777651 1 12
Q ss_pred -EEEEeC--CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEE-EEEeCCcEEEEecC
Q 046773 398 -ALMCVE--GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHV-AASCGTNIHLWDFG 452 (453)
Q Consensus 398 -lls~s~--~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~l-asg~D~~IklWDl~ 452 (453)
++++++ ++|-||....-+.+.....=.+..|. +.+|||..| |++.||+|.+..|+
T Consensus 295 ~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 295 CIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFE 355 (942)
T ss_pred EEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence 445444 99999999887776543221222255 667999866 55599999998774
No 96
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.78 E-value=1.4e-17 Score=167.06 Aligned_cols=246 Identities=16% Similarity=0.195 Sum_probs=174.0
Q ss_pred CCCCCCCeEEEEEEecCC--EEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEE
Q 046773 138 DVDNPDGLTCRCLTLSDL--YLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIH 215 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~~--~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIk 215 (453)
.|.-+ |.|++++++ ++.|+|-|++|-=|++.||+..+-+..-. + | +
T Consensus 140 ~H~~s----~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~-e--------v---------~---------- 187 (479)
T KOG0299|consen 140 KHQLS----VTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD-E--------V---------L---------- 187 (479)
T ss_pred cccCc----ceEEEeeccccceeecCCCcceeeeehhcCcccccccccc-h--------h---------h----------
Confidence 56644 789999874 99999999999999999998653222100 0 0 0
Q ss_pred EEEeecCC--cceE-EeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeee
Q 046773 216 VAVIDDVA--NETR-TAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTE 292 (453)
Q Consensus 216 vWd~~~~g--~~~~-~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~ 292 (453)
...+ ..+. +.|...+. .++.||||++ ||+|..|+-|.|||++|.+-. +++.+
T Consensus 188 ----k~~~~~~k~~r~~h~keil----~~avS~Dgky---latgg~d~~v~Iw~~~t~ehv--------------~~~~g 242 (479)
T KOG0299|consen 188 ----KSHGNPLKESRKGHVKEIL----TLAVSSDGKY---LATGGRDRHVQIWDCDTLEHV--------------KVFKG 242 (479)
T ss_pred ----hhccCCCCcccccccceeE----EEEEcCCCcE---EEecCCCceEEEecCcccchh--------------hcccc
Confidence 0001 1112 24544433 4899999998 889999999999999998832 34678
Q ss_pred eccceeEEEEc--CCceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEec-CCEEEEEe-CCCccccCcceEEEE
Q 046773 293 FTEFVGRVRVT--SHESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVN-AEAYIVVE-NRELENQNRRLAIVR 368 (453)
Q Consensus 293 h~~~v~~v~~s--~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~-g~~l~s~s-~dg~~~~~~~~i~Iw 368 (453)
|.+.|.+++|. ++.++++|.|.+|++|+++....+.++ ++|+..|.+++.- -++.+++. .|. |+++|
T Consensus 243 hr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetl--yGHqd~v~~IdaL~reR~vtVGgrDr-------T~rlw 313 (479)
T KOG0299|consen 243 HRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETL--YGHQDGVLGIDALSRERCVTVGGRDR-------TVRLW 313 (479)
T ss_pred cccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHH--hCCccceeeechhcccceEEeccccc-------eeEEE
Confidence 99999999986 566899999999999999875443333 4556667777644 35566665 677 99999
Q ss_pred EcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecc-cC---C--------ceEEEE--ec
Q 046773 369 RVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRE-RI---G--------EEVIAF--VG 433 (453)
Q Consensus 369 ~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~g-h~---~--------~~V~a~--s~ 433 (453)
.++.- ....+.++...+..+++- +...++++|+ |.|-||++..-+.|.+.+- |. . + |+++ .|
T Consensus 314 Ki~ee-sqlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~W-itsla~i~ 390 (479)
T KOG0299|consen 314 KIPEE-SQLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFW-ITSLAVIP 390 (479)
T ss_pred ecccc-ceeeeeCCCCCeeeEEEe-cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccc-eeeeEecc
Confidence 99432 122334444445555544 5677788998 9999999999888877642 21 1 3 6644 58
Q ss_pred CCCEEEEE-eCCcEEEEecC
Q 046773 434 DDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 434 d~~~lasg-~D~~IklWDl~ 452 (453)
....+||| .+|.||||.+.
T Consensus 391 ~sdL~asGS~~G~vrLW~i~ 410 (479)
T KOG0299|consen 391 GSDLLASGSWSGCVRLWKIE 410 (479)
T ss_pred cCceEEecCCCCceEEEEec
Confidence 88899999 99999999764
No 97
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.78 E-value=4.5e-16 Score=151.62 Aligned_cols=238 Identities=13% Similarity=0.068 Sum_probs=157.9
Q ss_pred EEEEEecC--CEE-EEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE--cCCeEE-EEeCCCCEEEEEee
Q 046773 147 CRCLTLSD--LYL-ACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLI-FATLDGDIHVAVID 220 (453)
Q Consensus 147 v~~lafs~--~~L-aSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~La-sgS~D~tIkvWd~~ 220 (453)
+.+++|++ ++| ++++.|++|++||+.+++.++++..+.. +..+++ +++.++ +++.|++|++||+.
T Consensus 33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~---------~~~~~~~~~g~~l~~~~~~~~~l~~~d~~ 103 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD---------PELFALHPNGKILYIANEDDNLVTVIDIE 103 (300)
T ss_pred CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC---------ccEEEECCCCCEEEEEcCCCCeEEEEECC
Confidence 35678875 454 7888999999999999999888764332 223444 466664 45678999999997
Q ss_pred cCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCC-CeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeE
Q 046773 221 DVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAG-RAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGR 299 (453)
Q Consensus 221 ~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D-~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~ 299 (453)
+ + ..+....... ....++|+|||++ |++++.+ ..+.+||.++++... .+. ......+
T Consensus 104 ~-~-~~~~~~~~~~--~~~~~~~~~dg~~---l~~~~~~~~~~~~~d~~~~~~~~--------------~~~-~~~~~~~ 161 (300)
T TIGR03866 104 T-R-KVLAEIPVGV--EPEGMAVSPDGKI---VVNTSETTNMAHFIDTKTYEIVD--------------NVL-VDQRPRF 161 (300)
T ss_pred C-C-eEEeEeeCCC--CcceEEECCCCCE---EEEEecCCCeEEEEeCCCCeEEE--------------EEE-cCCCccE
Confidence 6 3 2221111110 1124799999997 5566655 467888998877431 010 1123456
Q ss_pred EEEcCCce-E-EEE-cCCcEEEEECCCCceEEEEeeccC-----C--eEEEEEEecCCEEEEE-eCCCccccCcceEEEE
Q 046773 300 VRVTSHES-A-VAC-TSSRVITFDLRNQGMVLGERGYGR-----G--LYVTSVDVNAEAYIVV-ENRELENQNRRLAIVR 368 (453)
Q Consensus 300 v~~s~~~~-~-vas-~d~tIrlWDl~t~~~~~~~~g~~~-----~--~~v~~~~~~g~~l~s~-s~dg~~~~~~~~i~Iw 368 (453)
+.|++++. + +++ .++.|++||+++++++.....+.. . ..-.+++++++.++++ ..+. .+.||
T Consensus 162 ~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~-------~i~v~ 234 (300)
T TIGR03866 162 AEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPAN-------RVAVV 234 (300)
T ss_pred EEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCC-------eEEEE
Confidence 78887764 3 344 368899999999876654322211 0 1124567788875544 3344 79999
Q ss_pred EcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC--CeEEEEECCCCeEEEEeccc
Q 046773 369 RVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE--GVIRVWEVEGGEYMYSFRER 423 (453)
Q Consensus 369 ~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~--~tIrlWD~~tG~~l~tL~gh 423 (453)
|..+++.+..+. ....+..+.++|++.++++++. ++|+|||+++++++.+++..
T Consensus 235 d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~ 290 (300)
T TIGR03866 235 DAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG 290 (300)
T ss_pred ECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc
Confidence 999887765543 3445778899999999887643 99999999999999988643
No 98
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=5.5e-18 Score=158.51 Aligned_cols=223 Identities=15% Similarity=0.144 Sum_probs=159.8
Q ss_pred EEEcCCeEEEEeCCCCEEEEEeecCC----cceEEeeecceecCceEEEEeC--CCceeeEEEEeeCCCeEEEeeCCCCc
Q 046773 198 IIITDSQLIFATLDGDIHVAVIDDVA----NETRTAHFGSVMDDGVLIDFTG--CSRYWVGLYAGLAGRAFHIWDRQAEE 271 (453)
Q Consensus 198 i~f~g~~LasgS~D~tIkvWd~~~~g----~~~~~~~~~~v~~~~~~v~Fs~--dg~~~~~LaSgS~D~tIrvWD~~tg~ 271 (453)
+.|.|.+|||+|.|++|||..+...+ +.++++|.|.+. .|+|.. -|. .|||+|.|+.|-||.-+.|+
T Consensus 19 lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVw----qv~wahPk~G~---iLAScsYDgkVIiWke~~g~ 91 (299)
T KOG1332|consen 19 LDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVW----KVAWAHPKFGT---ILASCSYDGKVIIWKEENGR 91 (299)
T ss_pred hhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCee----EEeecccccCc---EeeEeecCceEEEEecCCCc
Confidence 34669999999999999999997644 467888988876 366643 355 49999999999999998886
Q ss_pred EEecccccCCcceeeeeeeeeeccceeEEEEcCCc----eEEEEcCCcEEEEECCCC-ceE-EEE-eeccCCeEEEEEEe
Q 046773 272 VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE----SAVACTSSRVITFDLRNQ-GMV-LGE-RGYGRGLYVTSVDV 344 (453)
Q Consensus 272 ~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~----~~vas~d~tIrlWDl~t~-~~~-~~~-~g~~~~~~v~~~~~ 344 (453)
--. .+....|...||+|++.|.+ ++.+|+|++|.|-+.++. +-. ... ..|..++...+..|
T Consensus 92 w~k------------~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswap 159 (299)
T KOG1332|consen 92 WTK------------AYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAP 159 (299)
T ss_pred hhh------------hhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecC
Confidence 100 01234678899999999875 466788999999888764 211 111 23433332233333
Q ss_pred c---C-----------CEEEEEeCCCccccCcceEEEEEcCCCe--eEEEEEecCCCeeEEEEeeCC----CeEEEEeC-
Q 046773 345 N---A-----------EAYIVVENRELENQNRRLAIVRRVDTFE--EVCRFSLRADRNVNVMGCMNQ----GYALMCVE- 403 (453)
Q Consensus 345 ~---g-----------~~l~s~s~dg~~~~~~~~i~Iw~~~tg~--~v~~l~~~~~~v~~~~~~~~~----~~lls~s~- 403 (453)
. | .+++++..|. .++||..+.++ .-++|..|.++||.++.+|.- .++++|+-
T Consensus 160 a~~~g~~~~~~~~~~~krlvSgGcDn-------~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqD 232 (299)
T KOG1332|consen 160 ASAPGSLVDQGPAAKVKRLVSGGCDN-------LVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQD 232 (299)
T ss_pred cCCCccccccCcccccceeeccCCcc-------ceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCC
Confidence 3 2 4588888888 99999988763 335588899999999999853 35667776
Q ss_pred CeEEEEECC--CC----eEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEe
Q 046773 404 GVIRVWEVE--GG----EYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWD 450 (453)
Q Consensus 404 ~tIrlWD~~--tG----~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWD 450 (453)
++|-||-.. .+ +.|.+| .+. +| ++++.|.+|+.+ .|++|+||.
T Consensus 233 g~viIwt~~~e~e~wk~tll~~f---~~~-~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 233 GTVIIWTKDEEYEPWKKTLLEEF---PDV-VWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred CcEEEEEecCccCcccccccccC---Ccc-eEEEEEeccccEEEEecCCcEEEEEE
Confidence 999999654 22 233333 344 77 678999999877 999999996
No 99
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.77 E-value=5.8e-17 Score=155.54 Aligned_cols=229 Identities=12% Similarity=0.133 Sum_probs=162.4
Q ss_pred cceEEEEEEcC---CeEEEEeCCCCEEEEEeecCC-c--ceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEe
Q 046773 192 SRAVSGIIITD---SQLIFATLDGDIHVAVIDDVA-N--ETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIW 265 (453)
Q Consensus 192 s~~V~~i~f~g---~~LasgS~D~tIkvWd~~~~g-~--~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvW 265 (453)
..+|++|+|++ ..|+.+|.|+|||+|+++..| . .....|.+.+. .+.++.||.. +++|+.|+.+|+|
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL----~v~Wsddgsk---Vf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVL----DVCWSDDGSK---VFSGGCDKQAKLW 99 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeE----EEEEccCCce---EEeeccCCceEEE
Confidence 35788899986 356688999999999998744 1 22233445443 3899999975 7899999999999
Q ss_pred eCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce----EEEEcCCcEEEEECCCCceEEEEeeccCCeEEEE
Q 046773 266 DRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES----AVACTSSRVITFDLRNQGMVLGERGYGRGLYVTS 341 (453)
Q Consensus 266 D~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~----~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~ 341 (453)
|+.+++.. ++..|.++|..+++-+... +.+|.|.|||.||++....+.+.... ..|++
T Consensus 100 DL~S~Q~~---------------~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP---eRvYa 161 (347)
T KOG0647|consen 100 DLASGQVS---------------QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP---ERVYA 161 (347)
T ss_pred EccCCCee---------------eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc---ceeee
Confidence 99999842 2346788999888765443 77788999999999987655554322 24677
Q ss_pred EEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecC--CCeeEEEEeeCCCeEEEEeC-CeEEEEECCCC--eE
Q 046773 342 VDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRA--DRNVNVMGCMNQGYALMCVE-GVIRVWEVEGG--EY 416 (453)
Q Consensus 342 ~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~--~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG--~~ 416 (453)
.+.-...++.+.++. .|.|+++..+........+| -.+|+++.+.+....+.++- |.+-|=.+..+ +-
T Consensus 162 ~Dv~~pm~vVata~r-------~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~ 234 (347)
T KOG0647|consen 162 ADVLYPMAVVATAER-------HIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKD 234 (347)
T ss_pred hhccCceeEEEecCC-------cEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccC
Confidence 777777888888888 99999997653222211222 12677776665444444554 88888888776 33
Q ss_pred EEEecccCC--------ceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 417 MYSFRERIG--------EEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 417 l~tL~gh~~--------~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
-.+|+-|.. +.|+ +|.|.-.+||++ +||++-.||-+
T Consensus 235 nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkd 281 (347)
T KOG0647|consen 235 NFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKD 281 (347)
T ss_pred ceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecch
Confidence 445555642 1355 677877889998 99999999954
No 100
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.77 E-value=7.3e-17 Score=152.66 Aligned_cols=216 Identities=18% Similarity=0.118 Sum_probs=164.4
Q ss_pred eEEEEEE--cCCeEEEEeCCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCC
Q 046773 194 AVSGIII--TDSQLIFATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQA 269 (453)
Q Consensus 194 ~V~~i~f--~g~~LasgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~t 269 (453)
.+.-|.+ +|++|.|++.|.++-||-... | +-++.+|++.|. .++.+-+++. |.+||.|.|+||||+++
T Consensus 12 plTqiKyN~eGDLlFscaKD~~~~vw~s~n-GerlGty~GHtGavW----~~Did~~s~~---liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 12 PLTQIKYNREGDLLFSCAKDSTPTVWYSLN-GERLGTYDGHTGAVW----CCDIDWDSKH---LITGSADQTAKLWDVET 83 (327)
T ss_pred ccceEEecCCCcEEEEecCCCCceEEEecC-CceeeeecCCCceEE----EEEecCCcce---eeeccccceeEEEEcCC
Confidence 3444666 599999999999999998754 4 778999999887 3677777775 88999999999999999
Q ss_pred CcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc-eEEEEcC------CcEEEEECCC-------CceEEEEeeccC
Q 046773 270 EEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE-SAVACTS------SRVITFDLRN-------QGMVLGERGYGR 335 (453)
Q Consensus 270 g~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~-~~vas~d------~tIrlWDl~t-------~~~~~~~~g~~~ 335 (453)
|+++. .| ....+|..|-|+.++ +++++.| +.|-+.|++. ..+.+...-+..
T Consensus 84 Gk~la-----------~~----k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~s 148 (327)
T KOG0643|consen 84 GKQLA-----------TW----KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDS 148 (327)
T ss_pred CcEEE-----------Ee----ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCcc
Confidence 99542 02 123678889998654 6666665 4588999983 333444322233
Q ss_pred CeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCC-eeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCC
Q 046773 336 GLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTF-EEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEG 413 (453)
Q Consensus 336 ~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg-~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~t 413 (453)
...+.-..+.++.++++-.+| .|.+||+.+| +.+..-..|...+..+.++++..+.++++- .|-||||+.+
T Consensus 149 kit~a~Wg~l~~~ii~Ghe~G-------~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~t 221 (327)
T KOG0643|consen 149 KITSALWGPLGETIIAGHEDG-------SISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRT 221 (327)
T ss_pred ceeeeeecccCCEEEEecCCC-------cEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccc
Confidence 333444688899999999999 9999999998 445555777778889999999999998887 9999999999
Q ss_pred CeEEEEecccCCceEE--EEecCCCEEEEE
Q 046773 414 GEYMYSFRERIGEEVI--AFVGDDRHVAAS 441 (453)
Q Consensus 414 G~~l~tL~gh~~~~V~--a~s~d~~~lasg 441 (453)
-+++.|+. ++.+|+ +++|--..++.|
T Consensus 222 l~v~Kty~--te~PvN~aaisP~~d~Vilg 249 (327)
T KOG0643|consen 222 LEVLKTYT--TERPVNTAAISPLLDHVILG 249 (327)
T ss_pred eeeEEEee--ecccccceecccccceEEec
Confidence 99999985 455587 677866666544
No 101
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.77 E-value=4.6e-17 Score=165.11 Aligned_cols=276 Identities=10% Similarity=0.087 Sum_probs=181.7
Q ss_pred CCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCC----eEEEEecCCCCCccccccceEEEEEEc--CCeEEEEe
Q 046773 138 DVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTR----LHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFAT 209 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg----~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS 209 (453)
+|+ -+|.+|++++ .+++|||+|-+||+||...- +.-|.|.+-..+ .|++++++ +++|+..|
T Consensus 165 hgt----k~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h-------~i~sl~ys~Tg~~iLvvs 233 (641)
T KOG0772|consen 165 HGT----KIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETH-------QINSLQYSVTGDQILVVS 233 (641)
T ss_pred CCc----eEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCccccc-------ccceeeecCCCCeEEEEe
Confidence 666 3488999985 69999999999999997533 223334332211 46778776 66666566
Q ss_pred CCCCEEEEEeec-------CC---c---ceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc----E
Q 046773 210 LDGDIHVAVIDD-------VA---N---ETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE----V 272 (453)
Q Consensus 210 ~D~tIkvWd~~~-------~g---~---~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~----~ 272 (453)
-...+||.|-+. .| | ..-++|...+. ...|+|+.+- .+.++|.|+|+||||++.-+ .
T Consensus 234 g~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt----~g~whP~~k~--~FlT~s~DgtlRiWdv~~~k~q~qV 307 (641)
T KOG0772|consen 234 GSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELT----CGCWHPDNKE--EFLTCSYDGTLRIWDVNNTKSQLQV 307 (641)
T ss_pred cCcceeEEccCCceeeeeeccchhhhhhhccCCceeeee----ccccccCccc--ceEEecCCCcEEEEecCCchhheeE
Confidence 666778887553 01 0 11224444332 2468888765 36689999999999998643 2
Q ss_pred EecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEEEcCCcEEEEECCCCceE---EEEeeccC--CeEEEEEEec
Q 046773 273 FVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVACTSSRVITFDLRNQGMV---LGERGYGR--GLYVTSVDVN 345 (453)
Q Consensus 273 ~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~vas~d~tIrlWDl~t~~~~---~~~~g~~~--~~~v~~~~~~ 345 (453)
+.. ....+-.-++...+|++++. +.+|.|+.|.+||....... +.-..|.. .+.+.+|+++
T Consensus 308 ik~------------k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~d 375 (641)
T KOG0772|consen 308 IKT------------KPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYD 375 (641)
T ss_pred Eee------------ccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccc
Confidence 220 01112234566778888774 45588999999998654221 11134544 4555667888
Q ss_pred CCEEEEEeCCCccccCcceEEEEEcCCC-eeEEEEEecCC--CeeEEEEeeCCCeEEEEeC-------CeEEEEECCCCe
Q 046773 346 AEAYIVVENRELENQNRRLAIVRRVDTF-EEVCRFSLRAD--RNVNVMGCMNQGYALMCVE-------GVIRVWEVEGGE 415 (453)
Q Consensus 346 g~~l~s~s~dg~~~~~~~~i~Iw~~~tg-~~v~~l~~~~~--~v~~~~~~~~~~~lls~s~-------~tIrlWD~~tG~ 415 (453)
|+.|++=+.|. +.||||+... +++.+.+.-+. ......|+|+.+.++++.+ +++..+|..|-+
T Consensus 376 g~~LlSRg~D~-------tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d 448 (641)
T KOG0772|consen 376 GNYLLSRGFDD-------TLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD 448 (641)
T ss_pred cchhhhccCCC-------ceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee
Confidence 88898888888 9999999875 45544433221 1345688999888887753 789999999999
Q ss_pred EEEEecccCCceEE-EEecCCCEEEEE-eCCcEEEE
Q 046773 416 YMYSFRERIGEEVI-AFVGDDRHVAAS-CGTNIHLW 449 (453)
Q Consensus 416 ~l~tL~gh~~~~V~-a~s~d~~~lasg-~D~~IklW 449 (453)
.++++.-.+...|. .+.|-=+.|..| .||+++|+
T Consensus 449 ~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 449 TVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred eEEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence 99988655666233 445655556556 89999986
No 102
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=5.3e-16 Score=143.80 Aligned_cols=240 Identities=11% Similarity=0.129 Sum_probs=158.0
Q ss_pred EEEEEec--CCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc------CCeEEEEeC-CCCEEEE
Q 046773 147 CRCLTLS--DLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT------DSQLIFATL-DGDIHVA 217 (453)
Q Consensus 147 v~~lafs--~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~------g~~LasgS~-D~tIkvW 217 (453)
|+|.++| +.+|||||.|+|||+--.+.-.|- +.||.- .+..+...|+.++|- +.+|+|++. |-.|.+=
T Consensus 92 iyc~~ws~~geliatgsndk~ik~l~fn~dt~~--~~g~dl-e~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~t 168 (350)
T KOG0641|consen 92 IYCTAWSPCGELIATGSNDKTIKVLPFNADTCN--ATGHDL-EFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYIT 168 (350)
T ss_pred EEEEEecCccCeEEecCCCceEEEEeccccccc--ccCcce-eeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEe
Confidence 5666666 589999999999998665544442 334432 222333478889882 457888765 4334443
Q ss_pred Eeec-CCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeee-ecc
Q 046773 218 VIDD-VANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTE-FTE 295 (453)
Q Consensus 218 d~~~-~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~-h~~ 295 (453)
|-.. .|.+.+.+|++++.. -++=+|- +++|||-|+|||.||++-..+... +. +.. |- .+ -++
T Consensus 169 dc~~g~~~~a~sghtghila-----lyswn~~---m~~sgsqdktirfwdlrv~~~v~~--l~--~~~---~~-~gless 232 (350)
T KOG0641|consen 169 DCGRGQGFHALSGHTGHILA-----LYSWNGA---MFASGSQDKTIRFWDLRVNSCVNT--LD--NDF---HD-GGLESS 232 (350)
T ss_pred ecCCCCcceeecCCcccEEE-----EEEecCc---EEEccCCCceEEEEeeeccceeee--cc--Ccc---cC-CCcccc
Confidence 4333 137888899998741 1222222 588999999999999986553210 00 000 00 01 136
Q ss_pred ceeEEEEcCCceEEEEc--CCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCC
Q 046773 296 FVGRVRVTSHESAVACT--SSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTF 373 (453)
Q Consensus 296 ~v~~v~~s~~~~~vas~--d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg 373 (453)
.|.+|+++|.+.+++++ |....|+|++-++.+.+...|...+.+.-|+|....++++|.|. .||+-|+.-.
T Consensus 233 avaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~-------~ikltdlqgd 305 (350)
T KOG0641|consen 233 AVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDM-------KIKLTDLQGD 305 (350)
T ss_pred eeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccc-------eEEEeecccc
Confidence 78899999988777764 67899999998887776655555555555666667889999999 8888887532
Q ss_pred ----eeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECC
Q 046773 374 ----EEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVE 412 (453)
Q Consensus 374 ----~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~ 412 (453)
-++..+..|.+.+....++|+.-.+++++. +|+.||-+.
T Consensus 306 la~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 306 LAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred hhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 234455667777777778887666666655 999999653
No 103
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=9.1e-19 Score=183.15 Aligned_cols=219 Identities=16% Similarity=0.193 Sum_probs=170.6
Q ss_pred eEEEEEEe--cCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEee
Q 046773 145 LTCRCLTL--SDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVID 220 (453)
Q Consensus 145 v~v~~laf--s~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~ 220 (453)
.+|.|+.. +.+.+++|+.|..+-||.+...-++..|.+|.. .|.+|-|+ ...|+.|+.|+||||||++
T Consensus 29 aav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hes--------pIeSl~f~~~E~LlaagsasgtiK~wDle 100 (825)
T KOG0267|consen 29 AAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHES--------PIESLTFDTSERLLAAGSASGTIKVWDLE 100 (825)
T ss_pred hhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCC--------cceeeecCcchhhhcccccCCceeeeehh
Confidence 34667764 457899999999999999999999999999765 47777776 4578999999999999998
Q ss_pred cCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCC-CCcEEecccccCCcceeeeeeeeeeccce
Q 046773 221 DVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQ-AEEVFVGGDLTDHNTVMGWRMLTEFTEFV 297 (453)
Q Consensus 221 ~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~-tg~~~~g~~l~~~~~v~~w~~l~~h~~~v 297 (453)
. + .+++.+|...+ ..|+|+|-|.+ .|+||.|..+++||++ .|.. ++..+|+.-|
T Consensus 101 e-Ak~vrtLtgh~~~~----~sv~f~P~~~~---~a~gStdtd~~iwD~Rk~Gc~---------------~~~~s~~~vv 157 (825)
T KOG0267|consen 101 E-AKIVRTLTGHLLNI----TSVDFHPYGEF---FASGSTDTDLKIWDIRKKGCS---------------HTYKSHTRVV 157 (825)
T ss_pred h-hhhhhhhhccccCc----ceeeeccceEE---eccccccccceehhhhccCce---------------eeecCCccee
Confidence 7 5 57788886543 36899999987 5899999999999998 4553 2344677788
Q ss_pred eEEEEcCCceEEEE--cCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCee
Q 046773 298 GRVRVTSHESAVAC--TSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEE 375 (453)
Q Consensus 298 ~~v~~s~~~~~vas--~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~ 375 (453)
+.++|+|++..+++ .|.+|+|||+..|+.+..+.+|...+....|+|..-.++++|.|. ++++||++|.+.
T Consensus 158 ~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~-------tv~f~dletfe~ 230 (825)
T KOG0267|consen 158 DVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDR-------TVRFWDLETFEV 230 (825)
T ss_pred EEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCc-------eeeeeccceeEE
Confidence 99999999966654 458999999999887666655544443334445445667788888 999999999887
Q ss_pred EEEEEecCCCeeEEEEeeCCCeEEEE
Q 046773 376 VCRFSLRADRNVNVMGCMNQGYALMC 401 (453)
Q Consensus 376 v~~l~~~~~~v~~~~~~~~~~~lls~ 401 (453)
+........+|+++.|.+++..++++
T Consensus 231 I~s~~~~~~~v~~~~fn~~~~~~~~G 256 (825)
T KOG0267|consen 231 ISSGKPETDGVRSLAFNPDGKIVLSG 256 (825)
T ss_pred eeccCCccCCceeeeecCCceeeecC
Confidence 77666556779999999887765433
No 104
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.76 E-value=1.2e-16 Score=159.43 Aligned_cols=234 Identities=15% Similarity=0.126 Sum_probs=162.4
Q ss_pred CCCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEE--EcCCeEEEEeCCC
Q 046773 137 SDVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGII--ITDSQLIFATLDG 212 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~--f~g~~LasgS~D~ 212 (453)
+||. .-|+.+.|++ +.++++|.|..||||.+....|....+.|.. .|.++. ++|++|+++|.|+
T Consensus 258 ~Gh~----kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~--------~V~~ls~h~tgeYllsAs~d~ 325 (506)
T KOG0289|consen 258 KGHT----KKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEE--------PVTGLSLHPTGEYLLSASNDG 325 (506)
T ss_pred cCcc----eEEEEEEeccchhheeecCCcceEEeeccccccCccccccccc--------cceeeeeccCCcEEEEecCCc
Confidence 4776 3388999987 5799999999999999999999888887765 466665 5689999999999
Q ss_pred CEEEEEeecCCcceEEeeeccee-cCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeee
Q 046773 213 DIHVAVIDDVANETRTAHFGSVM-DDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLT 291 (453)
Q Consensus 213 tIkvWd~~~~g~~~~~~~~~~v~-~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~ 291 (453)
+.-.-|+.+ | ..++.+...-. .+-...+|+|||-. +.+|+.|+.|||||+.++... -.+.
T Consensus 326 ~w~Fsd~~~-g-~~lt~vs~~~s~v~~ts~~fHpDgLi---fgtgt~d~~vkiwdlks~~~~--------------a~Fp 386 (506)
T KOG0289|consen 326 TWAFSDISS-G-SQLTVVSDETSDVEYTSAAFHPDGLI---FGTGTPDGVVKIWDLKSQTNV--------------AKFP 386 (506)
T ss_pred eEEEEEccC-C-cEEEEEeeccccceeEEeeEcCCceE---EeccCCCceEEEEEcCCcccc--------------ccCC
Confidence 998888887 5 55555544200 01124799999974 789999999999999988721 1245
Q ss_pred eeccceeEEEEcCCce--EEEEcCCcEEEEECCCCceEEEEeec-cCCeEEEEEEecCCEEEEEeCCCccccCcceEEEE
Q 046773 292 EFTEFVGRVRVTSHES--AVACTSSRVITFDLRNQGMVLGERGY-GRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVR 368 (453)
Q Consensus 292 ~h~~~v~~v~~s~~~~--~vas~d~tIrlWDl~t~~~~~~~~g~-~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw 368 (453)
+|+++|..++|+.++. +++++|+.|++|||+.-+...+.... ...+...+|+.+|..+++++. +++|+
T Consensus 387 ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~---------~l~Vy 457 (506)
T KOG0289|consen 387 GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGS---------DLQVY 457 (506)
T ss_pred CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecc---------eeEEE
Confidence 7899999999999885 55677888999999965433343111 112445667777888877744 44555
Q ss_pred EcC--C--CeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEE
Q 046773 369 RVD--T--FEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWE 410 (453)
Q Consensus 369 ~~~--t--g~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD 410 (453)
... + =.++..+..|......+.|.-...++++++- ..+||.-
T Consensus 458 ~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 458 ICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred EEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEee
Confidence 433 2 2345555444433444555545555555553 5666543
No 105
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.76 E-value=6.7e-17 Score=152.48 Aligned_cols=225 Identities=13% Similarity=0.120 Sum_probs=162.8
Q ss_pred eEEEEEE--cCCeEEEEeCCCCEEEEEeecCC---cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCC
Q 046773 194 AVSGIII--TDSQLIFATLDGDIHVAVIDDVA---NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQ 268 (453)
Q Consensus 194 ~V~~i~f--~g~~LasgS~D~tIkvWd~~~~g---~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~ 268 (453)
.|.+|++ +|.+|++||.|++++||+++... -...++|.+.|.+ +..+|... ..++++|.|++||+||++
T Consensus 22 ~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdq----l~w~~~~~--d~~atas~dk~ir~wd~r 95 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQ----LCWDPKHP--DLFATASGDKTIRIWDIR 95 (313)
T ss_pred cceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhh----heeCCCCC--cceEEecCCceEEEEEec
Confidence 5667877 58999999999999999998611 1335567665532 45554432 148899999999999999
Q ss_pred CCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc-e-EEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecC
Q 046773 269 AEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE-S-AVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNA 346 (453)
Q Consensus 269 tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~-~-~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g 346 (453)
++++..- ...-.+.+ -+..+|++ . +++.-|+.|-.-|.++.+....+..... ..=.++..++
T Consensus 96 ~~k~~~~--------------i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e-~ne~~w~~~n 159 (313)
T KOG1407|consen 96 SGKCTAR--------------IETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFE-VNEISWNNSN 159 (313)
T ss_pred cCcEEEE--------------eeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccce-eeeeeecCCC
Confidence 9883210 00000112 24556655 3 4444568899999998765444321110 1113455778
Q ss_pred CEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCC
Q 046773 347 EAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIG 425 (453)
Q Consensus 347 ~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~ 425 (453)
+..+.-++-| ++.|-..+.-+++++++.|+..-..+.|+|+|+|+++++. ..+.|||+..=-|++.+.-+.-
T Consensus 160 d~Fflt~GlG-------~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldw 232 (313)
T KOG1407|consen 160 DLFFLTNGLG-------CVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDW 232 (313)
T ss_pred CEEEEecCCc-------eEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccC
Confidence 8888888888 9999999888999999999987778889999999999887 9999999999999999887755
Q ss_pred ceEE--EEecCCCEEEEE-eCCcEEE
Q 046773 426 EEVI--AFVGDDRHVAAS-CGTNIHL 448 (453)
Q Consensus 426 ~~V~--a~s~d~~~lasg-~D~~Ikl 448 (453)
+ |. +|+-||++|||| +|.-|-|
T Consensus 233 p-VRTlSFS~dg~~lASaSEDh~IDI 257 (313)
T KOG1407|consen 233 P-VRTLSFSHDGRMLASASEDHFIDI 257 (313)
T ss_pred c-eEEEEeccCcceeeccCccceEEe
Confidence 5 87 677899999999 9887754
No 106
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.76 E-value=5.4e-17 Score=162.63 Aligned_cols=185 Identities=12% Similarity=0.202 Sum_probs=132.5
Q ss_pred EEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc--e-EEEEcCCcEEEEECCCC--ce
Q 046773 252 GLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--S-AVACTSSRVITFDLRNQ--GM 326 (453)
Q Consensus 252 ~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~-~vas~d~tIrlWDl~t~--~~ 326 (453)
.|+|||.|++|++||+.....- + ....+ -..+.+|.+.|+-|+|++.. + .++++|+.+.|||++++ ++
T Consensus 192 ~Lls~~~d~~i~lwdi~~~~~~-~-~~~~p-----~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~ 264 (422)
T KOG0264|consen 192 TLLSGSDDHTICLWDINAESKE-D-KVVDP-----KTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKP 264 (422)
T ss_pred eEeeccCCCcEEEEeccccccC-C-ccccc-----eEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCC
Confidence 3789999999999998764310 0 00011 12367899999999998633 3 44456789999999953 33
Q ss_pred EEEEeeccCCeEEEEEEecC-CEEEEEeCCCccccCcceEEEEEcCC-CeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-
Q 046773 327 VLGERGYGRGLYVTSVDVNA-EAYIVVENRELENQNRRLAIVRRVDT-FEEVCRFSLRADRNVNVMGCMNQGYALMCVE- 403 (453)
Q Consensus 327 ~~~~~g~~~~~~v~~~~~~g-~~l~s~s~dg~~~~~~~~i~Iw~~~t-g~~v~~l~~~~~~v~~~~~~~~~~~lls~s~- 403 (453)
.+...+|...+.+.+|.|.+ ..||++|+|+ ++.+||+.. .+++.+|..|.+.|..+.++|.-..++++|+
T Consensus 265 ~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~-------tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~ 337 (422)
T KOG0264|consen 265 SHSVKAHSAEVNCVAFNPFNEFILATGSADK-------TVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGT 337 (422)
T ss_pred cccccccCCceeEEEeCCCCCceEEeccCCC-------cEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEeccc
Confidence 33345666555555555443 5688999999 999999875 4688999999999999999998777776555
Q ss_pred -CeEEEEECCC-C-------------eEEEEecccCCceEEEEe--cCCCE-EEEE-eCCcEEEEec
Q 046773 404 -GVIRVWEVEG-G-------------EYMYSFRERIGEEVIAFV--GDDRH-VAAS-CGTNIHLWDF 451 (453)
Q Consensus 404 -~tIrlWD~~t-G-------------~~l~tL~gh~~~~V~a~s--~d~~~-lasg-~D~~IklWDl 451 (453)
+.+.|||+.. | +.|.+=.||+.. |..|+ |...+ |+|. +|+.+.||+.
T Consensus 338 D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~k-V~DfsWnp~ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 338 DRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAK-VSDFSWNPNEPWTIASVAEDNILQIWQM 403 (422)
T ss_pred CCcEEEEeccccccccChhhhccCCcceeEEecCcccc-cccccCCCCCCeEEEEecCCceEEEeec
Confidence 9999999974 2 123444688888 88555 76665 5666 9999999985
No 107
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=2.9e-17 Score=174.83 Aligned_cols=203 Identities=15% Similarity=0.198 Sum_probs=144.7
Q ss_pred CCCCCCCCCeEEEEEEecC-CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc---CCeEEEEeCC
Q 046773 136 PSDVDNPDGLTCRCLTLSD-LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT---DSQLIFATLD 211 (453)
Q Consensus 136 ~~gh~~~d~v~v~~lafs~-~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~---g~~LasgS~D 211 (453)
+.||+. . |..|.+|- .+|.|+|.|+|||||++.+-+||++|. |. ..|++|+|. ++..+|||.|
T Consensus 365 f~GHt~--D--ILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-Hn--------dfVTcVaFnPvDDryFiSGSLD 431 (712)
T KOG0283|consen 365 FKGHTA--D--ILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HN--------DFVTCVAFNPVDDRYFISGSLD 431 (712)
T ss_pred hhccch--h--heecccccCCeeEeccccccEEeecCCCcceeeEEe-cC--------CeeEEEEecccCCCcEeecccc
Confidence 459994 4 78999996 699999999999999999999999996 43 379999995 6789999999
Q ss_pred CCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeee
Q 046773 212 GDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLT 291 (453)
Q Consensus 212 ~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~ 291 (453)
+.||||++...- -....-...++ ..|.|.|||+. .+.|+.++..+++++..-+...-..+...+. +..+
T Consensus 432 ~KvRiWsI~d~~-Vv~W~Dl~~lI---TAvcy~PdGk~---avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~----Kk~~ 500 (712)
T KOG0283|consen 432 GKVRLWSISDKK-VVDWNDLRDLI---TAVCYSPDGKG---AVIGTFNGYCRFYDTEGLKLVSDFHIRLHNK----KKKQ 500 (712)
T ss_pred cceEEeecCcCe-eEeehhhhhhh---eeEEeccCCce---EEEEEeccEEEEEEccCCeEEEeeeEeeccC----cccc
Confidence 999999986511 00000011111 14899999997 5689999999999987655211000000000 0111
Q ss_pred eeccceeEEEEc---CCceEEEEcCCcEEEEECCCCceEEEEeeccC--CeEEEEEEecCCEEEEEeCCCccccCcceEE
Q 046773 292 EFTEFVGRVRVT---SHESAVACTSSRVITFDLRNQGMVLGERGYGR--GLYVTSVDVNAEAYIVVENRELENQNRRLAI 366 (453)
Q Consensus 292 ~h~~~v~~v~~s---~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~--~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~ 366 (453)
++ .|..++|. ++.++|.|.|..|||.|+++...++.+.|... ...-.+|+.+|+.++++|.|. .+.
T Consensus 501 ~~--rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs-------~VY 571 (712)
T KOG0283|consen 501 GK--RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDS-------WVY 571 (712)
T ss_pred Cc--eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCc-------eEE
Confidence 22 67888886 34578889999999999987666655554321 112345888999999999888 999
Q ss_pred EEEcC
Q 046773 367 VRRVD 371 (453)
Q Consensus 367 Iw~~~ 371 (453)
||+.+
T Consensus 572 iW~~~ 576 (712)
T KOG0283|consen 572 IWKND 576 (712)
T ss_pred EEeCC
Confidence 99864
No 108
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=2.1e-16 Score=169.32 Aligned_cols=236 Identities=14% Similarity=0.160 Sum_probs=165.1
Q ss_pred EEEEEecCCEEEEEeCCCcEEEEECCCC-eEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCCcc
Q 046773 147 CRCLTLSDLYLACGFADGAVRLFDLTTR-LHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVANE 225 (453)
Q Consensus 147 v~~lafs~~~LaSGS~D~TIrlWD~~tg-~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g~~ 225 (453)
-.|+..++++|.|++.|+-||+|+...- +...++.-+. ..|.+++-....+++||.++||+++.....-..
T Consensus 18 ~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g--------~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~ 89 (933)
T KOG1274|consen 18 LICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISG--------ELVSSIACYSNHFLTGSEQNTVLRYKFPSGEED 89 (933)
T ss_pred EEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccC--------ceeEEEeecccceEEeeccceEEEeeCCCCCcc
Confidence 3455556789999999999999998777 6666665322 267888888889999999999999988661112
Q ss_pred eE-EeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcC
Q 046773 226 TR-TAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTS 304 (453)
Q Consensus 226 ~~-~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~ 304 (453)
++ .-.+-. ...++|+.+|.+ +|.||.|-.|||-++.+...- ..+++|.++|.+|.|+|
T Consensus 90 ~iL~Rftlp----~r~~~v~g~g~~---iaagsdD~~vK~~~~~D~s~~--------------~~lrgh~apVl~l~~~p 148 (933)
T KOG1274|consen 90 TILARFTLP----IRDLAVSGSGKM---IAAGSDDTAVKLLNLDDSSQE--------------KVLRGHDAPVLQLSYDP 148 (933)
T ss_pred ceeeeeecc----ceEEEEecCCcE---EEeecCceeEEEEeccccchh--------------eeecccCCceeeeeEcC
Confidence 11 111111 124799999997 789999999999998875511 24778999999999999
Q ss_pred CceEEE--EcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEec
Q 046773 305 HESAVA--CTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLR 382 (453)
Q Consensus 305 ~~~~va--s~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~ 382 (453)
.+.++| +.||.|++||++++.+.+++.+- .++.+ ....+.
T Consensus 149 ~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v---------~k~n~----------------------~~~s~i------- 190 (933)
T KOG1274|consen 149 KGNFLAVSSCDGKVQIWDLQDGILSKTLTGV---------DKDNE----------------------FILSRI------- 190 (933)
T ss_pred CCCEEEEEecCceEEEEEcccchhhhhcccC---------Ccccc----------------------ccccce-------
Confidence 886555 45799999999998776655321 11110 000001
Q ss_pred CCCeeEEEEeeCCCeEEEEe-CCeEEEEECCCCeEEEEeccc--CC-ceEEEEecCCCEEEEE-eCCcEEEEecC
Q 046773 383 ADRNVNVMGCMNQGYALMCV-EGVIRVWEVEGGEYMYSFRER--IG-EEVIAFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 383 ~~~v~~~~~~~~~~~lls~s-~~tIrlWD~~tG~~l~tL~gh--~~-~~V~a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
...++++|+++.++... +++|++++..+.+.+.+|+.- .. ..+.+|+|.|++||++ -||.|.|||.+
T Consensus 191 ---~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 191 ---CTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred ---eeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence 12345556666666544 489999999888888888652 22 2233788999999888 88999999875
No 109
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.75 E-value=8.5e-17 Score=167.99 Aligned_cols=270 Identities=16% Similarity=0.259 Sum_probs=187.7
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEecCC--CC-----------------Cccccc----------cceEEEEEE--cCCe
Q 046773 156 YLACGFADGAVRLFDLTTRLHVRTFRPQ--HS-----------------DRLGQF----------SRAVSGIII--TDSQ 204 (453)
Q Consensus 156 ~LaSGS~D~TIrlWD~~tg~~~~tl~gh--~~-----------------~~~~~~----------s~~V~~i~f--~g~~ 204 (453)
-++|.|.|+||||||++.+..-.+++-. .. ...+.+ ...+++|+. +|+.
T Consensus 394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh 473 (1080)
T KOG1408|consen 394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH 473 (1080)
T ss_pred ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence 3789999999999999874322222100 00 000001 013566654 5788
Q ss_pred EEEEeCCCCEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcc
Q 046773 205 LIFATLDGDIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNT 283 (453)
Q Consensus 205 LasgS~D~tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~ 283 (453)
||+|-.-+++||+++..-. ......|...|. .+.||.---....|||+|.|+-|+|+|+...-.+.
T Consensus 474 LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEil----cLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~--------- 540 (1080)
T KOG1408|consen 474 LASGDRGGNLRVYDLQELEYTCFMEAHESEIL----CLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLV--------- 540 (1080)
T ss_pred ecccCccCceEEEEehhhhhhhheecccceeE----EEeecCchhhhHhhhhccCCceEEEEecccccchh---------
Confidence 9999999999999987522 233445655543 25554331111248999999999999996554321
Q ss_pred eeeeeeeeeeccceeEEEEcCCc---eEEEEc-CCcEEEEECCCC---ceEEEE----eeccCCeEEEEEEecCCEEEEE
Q 046773 284 VMGWRMLTEFTEFVGRVRVTSHE---SAVACT-SSRVITFDLRNQ---GMVLGE----RGYGRGLYVTSVDVNAEAYIVV 352 (453)
Q Consensus 284 v~~w~~l~~h~~~v~~v~~s~~~---~~vas~-d~tIrlWDl~t~---~~~~~~----~g~~~~~~v~~~~~~g~~l~s~ 352 (453)
++|-+|++.|.+|+|...+ .+++|+ |..| +++.... +.+... .+++ ..+-.+++|+-..++++
T Consensus 541 ----qtld~HSssITsvKFa~~gln~~MiscGADksi-mFr~~qk~~~g~~f~r~t~t~~kt-TlYDm~Vdp~~k~v~t~ 614 (1080)
T KOG1408|consen 541 ----QTLDGHSSSITSVKFACNGLNRKMISCGADKSI-MFRVNQKASSGRLFPRHTQTLSKT-TLYDMAVDPTSKLVVTV 614 (1080)
T ss_pred ----hhhcccccceeEEEEeecCCceEEEeccCchhh-heehhccccCceeccccccccccc-eEEEeeeCCCcceEEEE
Confidence 5688999999999997443 466665 4443 3444321 122111 1222 34556677888888999
Q ss_pred eCCCccccCcceEEEEEcCCCeeEEEEEecCC---CeeEEEEeeCCCeEEE-EeCCeEEEEECCCCeEEEEecccCCceE
Q 046773 353 ENRELENQNRRLAIVRRVDTFEEVCRFSLRAD---RNVNVMGCMNQGYALM-CVEGVIRVWEVEGGEYMYSFRERIGEEV 428 (453)
Q Consensus 353 s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~---~v~~~~~~~~~~~lls-~s~~tIrlWD~~tG~~l~tL~gh~~~~V 428 (453)
..|. .|+|+++..|+.+..|++..+ ....+...|.+-|+++ |+++|+-+.|.-+|+|+.+..||.+. |
T Consensus 615 cQDr-------nirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~-V 686 (1080)
T KOG1408|consen 615 CQDR-------NIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEA-V 686 (1080)
T ss_pred eccc-------ceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchh-e
Confidence 9888 999999999999999877542 2456677888899885 45599999999999999999999988 8
Q ss_pred E--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 429 I--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 429 ~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
+ -|.+|=++|+|. .|+-|.||.+.
T Consensus 687 TG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 687 TGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred eeeeecccchhheeecCCceEEEEECc
Confidence 8 678999999998 99999999874
No 110
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=2.6e-16 Score=158.26 Aligned_cols=262 Identities=12% Similarity=0.085 Sum_probs=183.0
Q ss_pred EEEEEeCCCc-EEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCC-EEEEEeecCC-cceEEeeec
Q 046773 156 YLACGFADGA-VRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGD-IHVAVIDDVA-NETRTAHFG 232 (453)
Q Consensus 156 ~LaSGS~D~T-IrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~t-IkvWd~~~~g-~~~~~~~~~ 232 (453)
.+.++|.|.. +.+||+.||..+.+++|-.. +.+++ .-+..+..++++...+- +.+|.+...- .+.+....|
T Consensus 9 ~~sssS~d~~~~~~~dl~TGt~~~~ykg~~~--a~~~s----l~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg 82 (476)
T KOG0646|consen 9 VCSSSSFDPINCIVWDLRTGTSLLQYKGSYL--AQAAS----LTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPG 82 (476)
T ss_pred EEeccCCCCcceeEEecCCCceeEEecCccc--ccchh----hhhhchhheeeecccCccccccccCchhhhhhhccccc
Confidence 4567788865 99999999999999986311 00000 01234567777766554 7899886521 121222222
Q ss_pred ceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEE
Q 046773 233 SVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVA 310 (453)
Q Consensus 233 ~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~va 310 (453)
.+ ..++-+|+|.+ |+.|..-+.|.||.+.||+++ ..+..|-..|.+++|+.++ ++++
T Consensus 83 ~v----~al~s~n~G~~---l~ag~i~g~lYlWelssG~LL--------------~v~~aHYQ~ITcL~fs~dgs~iiTg 141 (476)
T KOG0646|consen 83 PV----HALASSNLGYF---LLAGTISGNLYLWELSSGILL--------------NVLSAHYQSITCLKFSDDGSHIITG 141 (476)
T ss_pred ce----eeeecCCCceE---EEeecccCcEEEEEeccccHH--------------HHHHhhccceeEEEEeCCCcEEEec
Confidence 22 14788899987 666668889999999999954 2356888999999999776 4666
Q ss_pred EcCCcEEEEECCCC-----c-eEEEE-eeccCCeEEEEEEec----CCEEEEEeCCCccccCcceEEEEEcCCCeeEEEE
Q 046773 311 CTSSRVITFDLRNQ-----G-MVLGE-RGYGRGLYVTSVDVN----AEAYIVVENRELENQNRRLAIVRRVDTFEEVCRF 379 (453)
Q Consensus 311 s~d~tIrlWDl~t~-----~-~~~~~-~g~~~~~~v~~~~~~----g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l 379 (453)
|-|+.|.+|++.+- . -...+ ..+.|...|+.+... ..+++++|.|. ++|+||+..|..+.++
T Consensus 142 skDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~-------t~k~wdlS~g~LLlti 214 (476)
T KOG0646|consen 142 SKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDR-------TIKLWDLSLGVLLLTI 214 (476)
T ss_pred CCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCc-------eEEEEEeccceeeEEE
Confidence 77899999987531 0 11111 334556667776433 34789999999 9999999999888777
Q ss_pred EecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCC----------------CeEEEEecccCC-ceEE--EEecCCCEEE
Q 046773 380 SLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEG----------------GEYMYSFRERIG-EEVI--AFVGDDRHVA 439 (453)
Q Consensus 380 ~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~t----------------G~~l~tL~gh~~-~~V~--a~s~d~~~la 439 (453)
.+ |..+.+++..|-.+.+..++. |.|-+=++.. +..+..|.||.+ ..|. +++.||..|+
T Consensus 215 ~f-p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl 293 (476)
T KOG0646|consen 215 TF-PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL 293 (476)
T ss_pred ec-CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence 65 444677777777777666666 7776666532 345677889988 2377 6679999999
Q ss_pred EE-eCCcEEEEecC
Q 046773 440 AS-CGTNIHLWDFG 452 (453)
Q Consensus 440 sg-~D~~IklWDl~ 452 (453)
|| .||+|.|||+.
T Consensus 294 SGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 294 SGDEDGKVCVWDIY 307 (476)
T ss_pred eeCCCCCEEEEecc
Confidence 99 99999999974
No 111
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=8.9e-17 Score=150.44 Aligned_cols=230 Identities=11% Similarity=0.063 Sum_probs=160.3
Q ss_pred EEEecCCEEEEEeCCCcEEEEECCCC---eEEEEecCCCCCccccccceEEEEEE----cCCeEEEEeCCCCEEEEEeec
Q 046773 149 CLTLSDLYLACGFADGAVRLFDLTTR---LHVRTFRPQHSDRLGQFSRAVSGIII----TDSQLIFATLDGDIHVAVIDD 221 (453)
Q Consensus 149 ~lafs~~~LaSGS~D~TIrlWD~~tg---~~~~tl~gh~~~~~~~~s~~V~~i~f----~g~~LasgS~D~tIkvWd~~~ 221 (453)
-+.|.+++|||+|.|+||||+.++.. +.+.+|+||.+ .|.-+++ -|.+|||+|.|+.|.||.-+.
T Consensus 18 ~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~G--------PVwqv~wahPk~G~iLAScsYDgkVIiWke~~ 89 (299)
T KOG1332|consen 18 QLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSG--------PVWKVAWAHPKFGTILASCSYDGKVIIWKEEN 89 (299)
T ss_pred hhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCC--------CeeEEeecccccCcEeeEeecCceEEEEecCC
Confidence 35677999999999999999998765 46889999876 3454554 278999999999999999776
Q ss_pred CC----cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCC-c-EEecccccCCcceeeeeeeeeecc
Q 046773 222 VA----NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAE-E-VFVGGDLTDHNTVMGWRMLTEFTE 295 (453)
Q Consensus 222 ~g----~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg-~-~~~g~~l~~~~~v~~w~~l~~h~~ 295 (453)
| ...++.|...|. .|+|.|.+-- ..||.||.|++|+|.++++. . +-. .....|.-
T Consensus 90 -g~w~k~~e~~~h~~SVN----sV~wapheyg-l~LacasSDG~vsvl~~~~~g~w~t~-------------ki~~aH~~ 150 (299)
T KOG1332|consen 90 -GRWTKAYEHAAHSASVN----SVAWAPHEYG-LLLACASSDGKVSVLTYDSSGGWTTS-------------KIVFAHEI 150 (299)
T ss_pred -Cchhhhhhhhhhcccce----eecccccccc-eEEEEeeCCCcEEEEEEcCCCCccch-------------hhhhcccc
Confidence 4 344556666654 5899998544 35999999999999998764 2 100 12345666
Q ss_pred ceeEEEEcCC----------------ceEEEEcCCcEEEEECCCCceE--EEEeeccCCeEEEEEEec----CCEEEEEe
Q 046773 296 FVGRVRVTSH----------------ESAVACTSSRVITFDLRNQGMV--LGERGYGRGLYVTSVDVN----AEAYIVVE 353 (453)
Q Consensus 296 ~v~~v~~s~~----------------~~~vas~d~tIrlWDl~t~~~~--~~~~g~~~~~~v~~~~~~----g~~l~s~s 353 (453)
-|++|...|. .+++++.|..||||+..++.-. .++.+|..-+.-.+..|+ -..++++|
T Consensus 151 GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S 230 (299)
T KOG1332|consen 151 GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS 230 (299)
T ss_pred ccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEec
Confidence 6777766543 2566677899999999886322 234566554333333343 24689999
Q ss_pred CCCccccCcceEEEEEcCCC-e--eEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECC
Q 046773 354 NRELENQNRRLAIVRRVDTF-E--EVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVE 412 (453)
Q Consensus 354 ~dg~~~~~~~~i~Iw~~~tg-~--~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~ 412 (453)
.|+ ++-||..+.. + ....+.--++.+..+.+++.+..|+.+.+ +.|+||--.
T Consensus 231 qDg-------~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 231 QDG-------TVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred CCC-------cEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 999 9999976521 1 11112223566778888888777765555 999999543
No 112
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.74 E-value=8.5e-16 Score=147.15 Aligned_cols=272 Identities=15% Similarity=0.186 Sum_probs=166.0
Q ss_pred EEEEEecC---CEEEEEeCCCcEEEEECCCCe------------EEEEecCCCCCccccccceEEEEE---EcCCeEEEE
Q 046773 147 CRCLTLSD---LYLACGFADGAVRLFDLTTRL------------HVRTFRPQHSDRLGQFSRAVSGII---ITDSQLIFA 208 (453)
Q Consensus 147 v~~lafs~---~~LaSGS~D~TIrlWD~~tg~------------~~~tl~gh~~~~~~~~s~~V~~i~---f~g~~Lasg 208 (453)
|.+|+.++ ++++||+.|+.|-|||++.-. |+ .-+.|.. .|.-+|..+. +|.-+..|+
T Consensus 46 vNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~-v~~~h~~----~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 46 VNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCI-VAKQHEN----GHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeee-ccccCCc----cceeeeeeeEEeeecCceeecc
Confidence 78999985 799999999999999997654 22 1112211 1222455554 355577889
Q ss_pred eCCCCEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeee
Q 046773 209 TLDGDIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGW 287 (453)
Q Consensus 209 S~D~tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w 287 (453)
|.|.|+||||.++.- .-.+.. .+.|.. =+.||=....-.+|+|..|-.|||-|+++|..-
T Consensus 121 SFDhtlKVWDtnTlQ~a~~F~m-e~~VYs----hamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s-------------- 181 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAVDFKM-EGKVYS----HAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS-------------- 181 (397)
T ss_pred cccceEEEeecccceeeEEeec-Cceeeh----hhcChhhhcceEEEEecCCCcEEEEeccCCcce--------------
Confidence 999999999998711 000110 011110 112221111114788999999999999999842
Q ss_pred eeeeeeccceeEEEEcCCc---eEEEEcCCcEEEEECCCC-ceEEEEeecc------------CCeEE--EEEEecCCEE
Q 046773 288 RMLTEFTEFVGRVRVTSHE---SAVACTSSRVITFDLRNQ-GMVLGERGYG------------RGLYV--TSVDVNAEAY 349 (453)
Q Consensus 288 ~~l~~h~~~v~~v~~s~~~---~~vas~d~tIrlWDl~t~-~~~~~~~g~~------------~~~~v--~~~~~~g~~l 349 (453)
|+|.||++.|.+|..+|.. ++.+|.|++||+||++.. +|...+..|. |...| .+++-++..+
T Consensus 182 H~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l 261 (397)
T KOG4283|consen 182 HTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYL 261 (397)
T ss_pred eeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhh
Confidence 7789999999999999876 344567899999999875 6766542221 11122 3445556677
Q ss_pred EEEeCCCccccCcceEEEEEcCCCeeE-EEEE--ecCCC-eeEE-EEeeCCCeEEEE-eCCeEEEEECCCCeEEEEeccc
Q 046773 350 IVVENRELENQNRRLAIVRRVDTFEEV-CRFS--LRADR-NVNV-MGCMNQGYALMC-VEGVIRVWEVEGGEYMYSFRER 423 (453)
Q Consensus 350 ~s~s~dg~~~~~~~~i~Iw~~~tg~~v-~~l~--~~~~~-v~~~-~~~~~~~~lls~-s~~tIrlWD~~tG~~l~tL~gh 423 (453)
++.+.|. -+++|+...|+.. ..+- .|... ...+ .-+.+.+-++.. .++++.|.++-+|..++.|.+|
T Consensus 262 ~~~gtd~-------r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h 334 (397)
T KOG4283|consen 262 ASCGTDD-------RIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH 334 (397)
T ss_pred hhccCcc-------ceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecc
Confidence 7777777 8999998877421 1100 00000 0000 112232222222 2267777777778877777777
Q ss_pred CCceEE--EEecCCCEEEEE-eCCcEEEEe
Q 046773 424 IGEEVI--AFVGDDRHVAAS-CGTNIHLWD 450 (453)
Q Consensus 424 ~~~~V~--a~s~d~~~lasg-~D~~IklWD 450 (453)
-.. |. ++.||=+..-++ -|+.|..|-
T Consensus 335 ~k~-i~c~~~~~~fq~~~tg~~d~ni~~w~ 363 (397)
T KOG4283|consen 335 LKR-INCAAYRPDFEQCFTGDMNGNIYMWS 363 (397)
T ss_pred cce-eeEEeecCchhhhhccccCCcccccc
Confidence 333 55 445665666677 788887774
No 113
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.74 E-value=8.5e-16 Score=163.19 Aligned_cols=288 Identities=16% Similarity=0.193 Sum_probs=190.4
Q ss_pred CCCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CC-eEEEEeCC
Q 046773 137 SDVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DS-QLIFATLD 211 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~-~LasgS~D 211 (453)
.++. +. |+|+.-+| +.+|-|-.||+|.|.++..++.+.+|+ |. +| .|++++|. |. .||+|..-
T Consensus 199 ~~~~--s~--IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk-~d---~g----~VtslSFrtDG~p~las~~~~ 266 (910)
T KOG1539|consen 199 QEFF--SR--ITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFK-QD---WG----RVTSLSFRTDGNPLLASGRSN 266 (910)
T ss_pred cccc--cc--eeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEE-cc---cc----ceeEEEeccCCCeeEEeccCC
Confidence 3565 33 89999998 789999999999999999999999998 32 12 68899995 54 68888888
Q ss_pred CCEEEEEeecCC-c-ceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc----EE---ecccc----
Q 046773 212 GDIHVAVIDDVA-N-ETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE----VF---VGGDL---- 278 (453)
Q Consensus 212 ~tIkvWd~~~~g-~-~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~----~~---~g~~l---- 278 (453)
|++-+||++..- + .++..|.+.+.. ..|-|.-. .|++.+.|+..|+|=..++. .+ .||+.
T Consensus 267 G~m~~wDLe~kkl~~v~~nah~~sv~~----~~fl~~ep---Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~ 339 (910)
T KOG1539|consen 267 GDMAFWDLEKKKLINVTRNAHYGSVTG----ATFLPGEP---VLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSC 339 (910)
T ss_pred ceEEEEEcCCCeeeeeeeccccCCccc----ceecCCCc---eEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchh
Confidence 999999998622 2 223345443321 23333322 25566666666666444321 00 01100
Q ss_pred --------------------------------------------------------c-----------------------
Q 046773 279 --------------------------------------------------------T----------------------- 279 (453)
Q Consensus 279 --------------------------------------------------------~----------------------- 279 (453)
+
T Consensus 340 irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~ 419 (910)
T KOG1539|consen 340 IRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHK 419 (910)
T ss_pred eeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEec
Confidence 0
Q ss_pred CCcceeeee----eeeee----c------cceeEEEEcC--CceEEEEcCCcEEEEECCCCceEEEE-eeccCCeEEEEE
Q 046773 280 DHNTVMGWR----MLTEF----T------EFVGRVRVTS--HESAVACTSSRVITFDLRNQGMVLGE-RGYGRGLYVTSV 342 (453)
Q Consensus 280 ~~~~v~~w~----~l~~h----~------~~v~~v~~s~--~~~~vas~d~tIrlWDl~t~~~~~~~-~g~~~~~~v~~~ 342 (453)
+......|. ++-.| + ..+.+|++++ +-.+++++.++|-++|+++|-..... ....|...|..+
T Consensus 420 ~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gl 499 (910)
T KOG1539|consen 420 GKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGL 499 (910)
T ss_pred CcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEE
Confidence 000111121 11111 1 3445666664 44566677899999999998332223 123345566776
Q ss_pred EecC--CEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEE
Q 046773 343 DVNA--EAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYS 419 (453)
Q Consensus 343 ~~~g--~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~t 419 (453)
+.|+ ..+++++.+| .++.|+......+..+..... +..+..+-....++.+.+ -.|++.|+.|-+-.+.
T Consensus 500 a~D~~n~~~vsa~~~G-------ilkfw~f~~k~l~~~l~l~~~-~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~ 571 (910)
T KOG1539|consen 500 AVDGTNRLLVSAGADG-------ILKFWDFKKKVLKKSLRLGSS-ITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVRE 571 (910)
T ss_pred EecCCCceEEEccCcc-------eEEEEecCCcceeeeeccCCC-cceeeeeehhhhhhhhcCceeEEEEEchhhhhhHH
Confidence 6665 5589999999 999999998876666654332 223333333344444444 7899999999999999
Q ss_pred ecccCCceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 420 FRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 420 L~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
|.||.+. |+ +|||||++|+++ .|++||+||+.
T Consensus 572 f~gh~nr-itd~~FS~DgrWlisasmD~tIr~wDlp 606 (910)
T KOG1539|consen 572 FWGHGNR-ITDMTFSPDGRWLISASMDSTIRTWDLP 606 (910)
T ss_pred hhccccc-eeeeEeCCCCcEEEEeecCCcEEEEecc
Confidence 9999999 98 789999999999 99999999984
No 114
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.74 E-value=1.3e-14 Score=142.87 Aligned_cols=274 Identities=17% Similarity=0.287 Sum_probs=197.6
Q ss_pred CCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCe-EEEEecCCCCCccccccceEEEEEE---cCC-eEEEEeC
Q 046773 138 DVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRL-HVRTFRPQHSDRLGQFSRAVSGIII---TDS-QLIFATL 210 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~-~~~tl~gh~~~~~~~~s~~V~~i~f---~g~-~LasgS~ 210 (453)
+|.+ . +.++.|+. ..+++++.|+.+++|+...+. .+..+.+++. ..+..+.+ ++. .++..+.
T Consensus 63 ~~~~--~--i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 131 (466)
T COG2319 63 GHED--S--ITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD-------SSVSKLALSSPDGNSILLASSS 131 (466)
T ss_pred eccc--e--EEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC-------CceeeEEEECCCcceEEeccCC
Confidence 5663 3 67777764 688899999999999999998 7888876432 12333333 344 4454444
Q ss_pred -CCCEEEEEeec-CC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeC-CCeEEEeeCCCCcEEecccccCCcceee
Q 046773 211 -DGDIHVAVIDD-VA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLA-GRAFHIWDRQAEEVFVGGDLTDHNTVMG 286 (453)
Q Consensus 211 -D~tIkvWd~~~-~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~-D~tIrvWD~~tg~~~~g~~l~~~~~v~~ 286 (453)
|+++++|+... .. ...+..|...+. .++|+|+++. +++++. |+++++|++.++..+
T Consensus 132 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~------------- 191 (466)
T COG2319 132 LDGTVKLWDLSTPGKLIRTLEGHSESVT----SLAFSPDGKL---LASGSSLDGTIKLWDLRTGKPL------------- 191 (466)
T ss_pred CCccEEEEEecCCCeEEEEEecCcccEE----EEEECCCCCE---EEecCCCCCceEEEEcCCCceE-------------
Confidence 99999999875 12 455555655543 4899999984 667775 999999999886532
Q ss_pred eeeeeeeccceeEEEEcCCce--EEE-EcCCcEEEEECCCCceEE-EEeeccCCeEEEEEEecCCEEEEEeCCCccccCc
Q 046773 287 WRMLTEFTEFVGRVRVTSHES--AVA-CTSSRVITFDLRNQGMVL-GERGYGRGLYVTSVDVNAEAYIVVENRELENQNR 362 (453)
Q Consensus 287 w~~l~~h~~~v~~v~~s~~~~--~va-s~d~tIrlWDl~t~~~~~-~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~ 362 (453)
.++.+|...|.+++++|++. +++ +.|++|++||..++.++. ...+|.... +..|++++..+++++.++
T Consensus 192 -~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~------ 263 (466)
T COG2319 192 -STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDG------ 263 (466)
T ss_pred -EeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCC------
Confidence 23556888999999998763 444 457899999999877766 456676655 568888887888888888
Q ss_pred ceEEEEEcCCCee-EEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEec--ccCCceEE--EEecCCC
Q 046773 363 RLAIVRRVDTFEE-VCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFR--ERIGEEVI--AFVGDDR 436 (453)
Q Consensus 363 ~~i~Iw~~~tg~~-v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~--gh~~~~V~--a~s~d~~ 436 (453)
.+++|+...... +..+..|...+..+.+.+++..+++++. +++++||+.+........ .|... |. ++.+++.
T Consensus 264 -~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 341 (466)
T COG2319 264 -TIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGP-VSSLSFSPDGS 341 (466)
T ss_pred -cEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCc-eEEEEECCCCC
Confidence 999999987654 4444455666888888887788777554 789999999998877776 78775 55 4423324
Q ss_pred EE-EEE-eCCcEEEEecC
Q 046773 437 HV-AAS-CGTNIHLWDFG 452 (453)
Q Consensus 437 ~l-asg-~D~~IklWDl~ 452 (453)
.+ +++ .|+.+++|++.
T Consensus 342 ~~~~~~~~d~~~~~~~~~ 359 (466)
T COG2319 342 LLVSGGSDDGTIRLWDLR 359 (466)
T ss_pred EEEEeecCCCcEEeeecC
Confidence 44 454 78999999874
No 115
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.74 E-value=1.1e-16 Score=165.85 Aligned_cols=249 Identities=14% Similarity=0.165 Sum_probs=162.2
Q ss_pred CCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEE--ecCCCCCccccccceEEEEEEc---CCeEEEEeC
Q 046773 138 DVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRT--FRPQHSDRLGQFSRAVSGIIIT---DSQLIFATL 210 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~t--l~gh~~~~~~~~s~~V~~i~f~---g~~LasgS~ 210 (453)
-|.|. |..+..-+ ..|+|+|.|.|||+||+++++++.. +.||.. +|.+++|. ...+++|+.
T Consensus 98 aH~nA----ifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~--------SvkS~cf~~~n~~vF~tGgR 165 (720)
T KOG0321|consen 98 AHKNA----IFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTG--------SVKSECFMPTNPAVFCTGGR 165 (720)
T ss_pred cccce----eEeeccCCCceeEEEccCCceeeeeeeccceeecceeeccccc--------ccchhhhccCCCcceeeccC
Confidence 47654 56666654 5899999999999999999999888 888765 67777774 567899999
Q ss_pred CCCEEEEEeecCC--------cceEEee--------------------ecceecCceEEEEeCCCceeeEEEEeeC-CCe
Q 046773 211 DGDIHVAVIDDVA--------NETRTAH--------------------FGSVMDDGVLIDFTGCSRYWVGLYAGLA-GRA 261 (453)
Q Consensus 211 D~tIkvWd~~~~g--------~~~~~~~--------------------~~~v~~~~~~v~Fs~dg~~~~~LaSgS~-D~t 261 (453)
|+.|.|||....+ .+.+-.| ...+. ..+.|-|..|.. .|||+|. |++
T Consensus 166 Dg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~-ssvTvv~fkDe~---tlaSaga~D~~ 241 (720)
T KOG0321|consen 166 DGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIF-SSVTVVLFKDES---TLASAGAADST 241 (720)
T ss_pred CCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCcee-eeeEEEEEeccc---eeeeccCCCcc
Confidence 9999999986411 0111111 11121 113344445544 3888887 999
Q ss_pred EEEeeCCCCc-EEecccccCCcceeeeeeeeee-ccceeE--EEEc--CCceEEEEcCCcEEEEECCCCceE-EEE-eec
Q 046773 262 FHIWDRQAEE-VFVGGDLTDHNTVMGWRMLTEF-TEFVGR--VRVT--SHESAVACTSSRVITFDLRNQGMV-LGE-RGY 333 (453)
Q Consensus 262 IrvWD~~tg~-~~~g~~l~~~~~v~~w~~l~~h-~~~v~~--v~~s--~~~~~vas~d~tIrlWDl~t~~~~-~~~-~g~ 333 (453)
|||||+++.. .+.+.....+. +.-| .-.++. +.++ +..+++.|.|++|.+||+.+-..- ..+ .|+
T Consensus 242 iKVWDLRk~~~~~r~ep~~~~~-------~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~ 314 (720)
T KOG0321|consen 242 IKVWDLRKNYTAYRQEPRGSDK-------YPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGK 314 (720)
T ss_pred eEEEeecccccccccCCCcccC-------ccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCc
Confidence 9999999876 33332221111 1011 112222 3333 344677799999999999875321 111 222
Q ss_pred c-CCeEE-EEEEecCCEEEEEeCCCccccCcceEEEEEcCCCe-eEEEEEecCCCeeEEEEee-CCCeEEEEeC-CeEEE
Q 046773 334 G-RGLYV-TSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFE-EVCRFSLRADRNVNVMGCM-NQGYALMCVE-GVIRV 408 (453)
Q Consensus 334 ~-~~~~v-~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~-~v~~l~~~~~~v~~~~~~~-~~~~lls~s~-~tIrl 408 (453)
. ...++ .++++++..+++++.|. .+.||.+++.+ ....+.+|.-.|..+..++ +-.-+++|++ .+++|
T Consensus 315 ~~~sf~vks~lSpd~~~l~SgSsd~-------~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~ki 387 (720)
T KOG0321|consen 315 LNSSFYVKSELSPDDCSLLSGSSDE-------QAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKI 387 (720)
T ss_pred ccceeeeeeecCCCCceEeccCCCc-------ceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEE
Confidence 1 11223 34689999999999999 88999998764 3334556665577777665 3456778887 99999
Q ss_pred EECCCCeE
Q 046773 409 WEVEGGEY 416 (453)
Q Consensus 409 WD~~tG~~ 416 (453)
|++..|-+
T Consensus 388 W~l~~~l~ 395 (720)
T KOG0321|consen 388 WRLSNGLE 395 (720)
T ss_pred EeccCchh
Confidence 99976543
No 116
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.73 E-value=2e-16 Score=172.27 Aligned_cols=241 Identities=18% Similarity=0.162 Sum_probs=176.2
Q ss_pred EEEEE--EcCCeEEEEe--CCCCEEEEEeecCC-------------cceEEeeecceecCceEEEEeCCCceeeEEEEee
Q 046773 195 VSGII--ITDSQLIFAT--LDGDIHVAVIDDVA-------------NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGL 257 (453)
Q Consensus 195 V~~i~--f~g~~LasgS--~D~tIkvWd~~~~g-------------~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS 257 (453)
+.+|. +++.++|||+ .|+.++||+.+... ..+..-|.+.+. .|.|+|||++ |||||
T Consensus 16 IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~----CVR~S~dG~~---lAsGS 88 (942)
T KOG0973|consen 16 IFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVN----CVRFSPDGSY---LASGS 88 (942)
T ss_pred EEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCcee----EEEECCCCCe---Eeecc
Confidence 44444 5678899999 99999999976521 122223444443 5899999997 99999
Q ss_pred CCCeEEEeeCCC---CcEEecccccCCcceeeee---eeeeeccceeEEEEcCCceEEE--EcCCcEEEEECCCCceEEE
Q 046773 258 AGRAFHIWDRQA---EEVFVGGDLTDHNTVMGWR---MLTEFTEFVGRVRVTSHESAVA--CTSSRVITFDLRNQGMVLG 329 (453)
Q Consensus 258 ~D~tIrvWD~~t---g~~~~g~~l~~~~~v~~w~---~l~~h~~~v~~v~~s~~~~~va--s~d~tIrlWDl~t~~~~~~ 329 (453)
.|+-|-||+-.. +..+ ++-.+...+.-|+ .|++|..-|..|..+|+..+++ |-|++|-|||.++.+++.+
T Consensus 89 DD~~v~iW~~~~~~~~~~f--gs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~v 166 (942)
T KOG0973|consen 89 DDRLVMIWERAEIGSGTVF--GSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKV 166 (942)
T ss_pred CcceEEEeeecccCCcccc--cccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeee
Confidence 999999999874 1122 0101122233354 7899999999999999886554 4589999999999988777
Q ss_pred EeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecC------CCeeEEEEeeCCCeEEEEeC
Q 046773 330 ERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRA------DRNVNVMGCMNQGYALMCVE 403 (453)
Q Consensus 330 ~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~------~~v~~~~~~~~~~~lls~s~ 403 (453)
+.+|...+.=.+++|.|..+++-|.|. +++||...+-.....++..- .-.+.+.++|||.++++..+
T Consensus 167 l~~H~s~VKGvs~DP~Gky~ASqsdDr-------tikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 167 LRGHQSLVKGVSWDPIGKYFASQSDDR-------TLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred eecccccccceEECCccCeeeeecCCc-------eEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 777765544467888899999999998 99999977654444443321 22567788999999987643
Q ss_pred -----CeEEEEECCCCeEEEEecccCCceEE--EEec------C-------CC----EEEEE-eCCcEEEEecC
Q 046773 404 -----GVIRVWEVEGGEYMYSFRERIGEEVI--AFVG------D-------DR----HVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 404 -----~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~------d-------~~----~lasg-~D~~IklWDl~ 452 (453)
.++.|-+-.+-++-..|-||... +. .|.| . +. ++|+| .|++|-||...
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~LvGH~~p-~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~ 312 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLVGHSAP-VEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTA 312 (942)
T ss_pred ccCCcceeEEEecCCceeeeeeecCCCc-eEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecC
Confidence 69999998888888999999987 65 5543 1 11 56788 99999999863
No 117
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.73 E-value=1.1e-16 Score=160.36 Aligned_cols=194 Identities=16% Similarity=0.207 Sum_probs=143.3
Q ss_pred CCCCCCCeEEEEEEecCC---EEEEEeCCCcEEEEECCCCeE-------EEEecCCCCCccccccceEEEEEEc---CCe
Q 046773 138 DVDNPDGLTCRCLTLSDL---YLACGFADGAVRLFDLTTRLH-------VRTFRPQHSDRLGQFSRAVSGIIIT---DSQ 204 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~~---~LaSGS~D~TIrlWD~~tg~~-------~~tl~gh~~~~~~~~s~~V~~i~f~---g~~ 204 (453)
||. +. .+.|.++.. .|+|||.|++|.+||+..... ...+.+|. ..|..++|. .+.
T Consensus 175 gH~--~e--g~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~--------~~VeDV~~h~~h~~l 242 (422)
T KOG0264|consen 175 GHE--KE--GYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHE--------DVVEDVAWHPLHEDL 242 (422)
T ss_pred eec--cc--ccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCC--------cceehhhccccchhh
Confidence 888 32 477888863 799999999999999976543 23345544 367777764 567
Q ss_pred EEEEeCCCCEEEEEeecC-C--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCC
Q 046773 205 LIFATLDGDIHVAVIDDV-A--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDH 281 (453)
Q Consensus 205 LasgS~D~tIkvWd~~~~-g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~ 281 (453)
++|++.|+.+.|||+.+. - .++...|.+.+. .|+|+|-+.+ .||+||.|+||+|||++.=+.
T Consensus 243 F~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn----~~~fnp~~~~--ilAT~S~D~tV~LwDlRnL~~--------- 307 (422)
T KOG0264|consen 243 FGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVN----CVAFNPFNEF--ILATGSADKTVALWDLRNLNK--------- 307 (422)
T ss_pred heeecCCCeEEEEEcCCCCCCCcccccccCCcee----EEEeCCCCCc--eEEeccCCCcEEEeechhccc---------
Confidence 899999999999999851 1 345556777665 5999999987 599999999999999976331
Q ss_pred cceeeeeeeeeeccceeEEEEcCCc-eEEE--EcCCcEEEEECCCCceE--------------EEEeeccCCeEEEEEEe
Q 046773 282 NTVMGWRMLTEFTEFVGRVRVTSHE-SAVA--CTSSRVITFDLRNQGMV--------------LGERGYGRGLYVTSVDV 344 (453)
Q Consensus 282 ~~v~~w~~l~~h~~~v~~v~~s~~~-~~va--s~d~tIrlWDl~t~~~~--------------~~~~g~~~~~~v~~~~~ 344 (453)
..|++.+|.+.|.+|.++|+. .++| +.|+++.|||+..-+.. ....||. ..|..|+.
T Consensus 308 ----~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~--~kV~DfsW 381 (422)
T KOG0264|consen 308 ----PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHT--AKVSDFSW 381 (422)
T ss_pred ----CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcc--cccccccC
Confidence 136788999999999999865 3444 45789999999753211 2224454 45677776
Q ss_pred cCC---EEEEEeCCCccccCcceEEEEEcC
Q 046773 345 NAE---AYIVVENRELENQNRRLAIVRRVD 371 (453)
Q Consensus 345 ~g~---~l~s~s~dg~~~~~~~~i~Iw~~~ 371 (453)
++. .++|++.|+ ...||.+.
T Consensus 382 np~ePW~I~SvaeDN-------~LqIW~~s 404 (422)
T KOG0264|consen 382 NPNEPWTIASVAEDN-------ILQIWQMA 404 (422)
T ss_pred CCCCCeEEEEecCCc-------eEEEeecc
Confidence 654 578888887 99999875
No 118
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.71 E-value=2.4e-16 Score=159.46 Aligned_cols=268 Identities=11% Similarity=0.170 Sum_probs=186.2
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCeEE---EEecCCCCCccccccceEEE--EEEcCCeEEEEeCCCCEEEEEe
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRLHV---RTFRPQHSDRLGQFSRAVSG--IIITDSQLIFATLDGDIHVAVI 219 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~---~tl~gh~~~~~~~~s~~V~~--i~f~g~~LasgS~D~tIkvWd~ 219 (453)
|.+++.|. +.+-||+ -+.|||||+....-. -.|.-... +. .+++ +..||+.|+.|+.-.|+-|||+
T Consensus 422 VcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~r---dn---yiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 422 VCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNR---DN---YIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred EEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCc---cc---ceeeeEecCCCceEEeccccceeeeeec
Confidence 77888885 5777886 678999999654211 11110000 11 2333 4468999999999999999999
Q ss_pred ecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeE
Q 046773 220 DDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGR 299 (453)
Q Consensus 220 ~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~ 299 (453)
..+-.+. ......-......++.+||.+. .+++-.|+.|+|||+...... .+++||++-+.|
T Consensus 495 AapTpri-kaeltssapaCyALa~spDakv---cFsccsdGnI~vwDLhnq~~V--------------rqfqGhtDGasc 556 (705)
T KOG0639|consen 495 AAPTPRI-KAELTSSAPACYALAISPDAKV---CFSCCSDGNIAVWDLHNQTLV--------------RQFQGHTDGASC 556 (705)
T ss_pred cCCCcch-hhhcCCcchhhhhhhcCCccce---eeeeccCCcEEEEEcccceee--------------ecccCCCCCcee
Confidence 8732111 1100000011224788999885 567788999999999877643 468899999999
Q ss_pred EEEcCCc--eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCC-CeeE
Q 046773 300 VRVTSHE--SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDT-FEEV 376 (453)
Q Consensus 300 v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~t-g~~v 376 (453)
+-+++++ +-.++-|.+||.||++++..+.... ...++......|.++.++++-..+ .+|...+ +..-
T Consensus 557 Idis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens---------~vevlh~skp~k 626 (705)
T KOG0639|consen 557 IDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENS---------NVEVLHTSKPEK 626 (705)
T ss_pred EEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccC---------cEEEEecCCccc
Confidence 9999665 5667779999999999986554321 122344444568889999887666 4555443 3334
Q ss_pred EEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEec
Q 046773 377 CRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 377 ~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl 451 (453)
..+..|++.|.++-|.+-|+++++.+- +-+..|-+--|..+...+.- .. |. .++.|+++||+| -|++..|+.+
T Consensus 627 yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~-Ss-VlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 627 YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES-SS-VLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecccc-Cc-ceeeeeccCceEEEecCCCcceEEEEE
Confidence 556678888999999999999887765 89999999989887665433 23 55 678999999999 8988888765
No 119
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.71 E-value=2.3e-17 Score=174.76 Aligned_cols=266 Identities=15% Similarity=0.182 Sum_probs=180.1
Q ss_pred CCCCCCCeEEEEEEec--CCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCC
Q 046773 138 DVDNPDGLTCRCLTLS--DLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGD 213 (453)
Q Consensus 138 gh~~~d~v~v~~lafs--~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~t 213 (453)
||-|. |||..|+ +.+|+|||.|..+|||.++|++|+.+.+||.+ .++.++.+ ..+++++|.|..
T Consensus 188 gH~na----Vyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~--------ditdlavs~~n~~iaaaS~D~v 255 (1113)
T KOG0644|consen 188 GHRNA----VYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSG--------DITDLAVSSNNTMIAAASNDKV 255 (1113)
T ss_pred hhhhh----eeeeeeccccceEeecCccceeeeeeccchhhhccCCCCcc--------ccchhccchhhhhhhhcccCce
Confidence 89866 8999998 57999999999999999999999999999876 35555544 446899999999
Q ss_pred EEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCC-CCcEEecccccCCcceeeeeee
Q 046773 214 IHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQ-AEEVFVGGDLTDHNTVMGWRML 290 (453)
Q Consensus 214 IkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~-tg~~~~g~~l~~~~~v~~w~~l 290 (453)
|+||-+.+ | +..+++|+|.|. .++|+|- +|.|.|+|+++||.+ .-..+.- .|-. .
T Consensus 256 IrvWrl~~-~~pvsvLrghtgavt----aiafsP~-------~sss~dgt~~~wd~r~~~~~y~p----rp~~------~ 313 (1113)
T KOG0644|consen 256 IRVWRLPD-GAPVSVLRGHTGAVT----AIAFSPR-------ASSSDDGTCRIWDARLEPRIYVP----RPLK------F 313 (1113)
T ss_pred EEEEecCC-CchHHHHhcccccee----eeccCcc-------ccCCCCCceEeccccccccccCC----CCCC------c
Confidence 99999988 5 788999999875 5899994 467899999999987 2222211 0000 0
Q ss_pred eeeccceeEEEEcC--CceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEE
Q 046773 291 TEFTEFVGRVRVTS--HESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVR 368 (453)
Q Consensus 291 ~~h~~~v~~v~~s~--~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw 368 (453)
.+ .+-+.++.|-. +...+++.|++-+.|....-.+. .. .-+.++.-+-.....+++-.+- -+++|
T Consensus 314 ~~-~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~--~~---~lif~t~ssd~~~~~~~ar~~~-------~~~vw 380 (1113)
T KOG0644|consen 314 TE-KDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWR--SN---LLIFVTRSSDLSSIVVTARNDH-------RLCVW 380 (1113)
T ss_pred cc-ccceeeeeccccccccccccCCcccccchhhHhhhh--cc---ceEEEeccccccccceeeeeee-------Eeeee
Confidence 00 12334444432 22345556677777765532110 00 0011111110011223333333 67899
Q ss_pred EcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC--CeEEEEECCCCeEEEEe-cccCCceEE-EEecCCCEEEEE-eC
Q 046773 369 RVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE--GVIRVWEVEGGEYMYSF-RERIGEEVI-AFVGDDRHVAAS-CG 443 (453)
Q Consensus 369 ~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~--~tIrlWD~~tG~~l~tL-~gh~~~~V~-a~s~d~~~lasg-~D 443 (453)
++-+|+.++.+.+|.+.+.-+-++|-...++.+++ |..-|||+..|..++.. .||... |. .|++||+.++.. .-
T Consensus 381 nl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl-~d~kFSqdgts~~lsd~h 459 (1113)
T KOG0644|consen 381 NLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKL-VDGKFSQDGTSIALSDDH 459 (1113)
T ss_pred ecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccccee-eccccCCCCceEecCCCC
Confidence 99999888888888888888888885444444444 88999999999776655 455444 66 899999998877 55
Q ss_pred CcEEEEec
Q 046773 444 TNIHLWDF 451 (453)
Q Consensus 444 ~~IklWDl 451 (453)
|.+.|..+
T Consensus 460 gql~i~g~ 467 (1113)
T KOG0644|consen 460 GQLYILGT 467 (1113)
T ss_pred CceEEecc
Confidence 67776544
No 120
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.71 E-value=3.3e-16 Score=159.00 Aligned_cols=231 Identities=8% Similarity=0.031 Sum_probs=153.0
Q ss_pred ceEEEEEEc--CCeEEEEeCCCCEEEEEeecCC--c---ceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEe
Q 046773 193 RAVSGIIIT--DSQLIFATLDGDIHVAVIDDVA--N---ETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIW 265 (453)
Q Consensus 193 ~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g--~---~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvW 265 (453)
..|++++++ |.+++|||.|.+|+.||...-. . ..+.-...+.+ .++.|++.|..++ .+||+ ..+||.
T Consensus 168 k~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i---~sl~ys~Tg~~iL-vvsg~--aqakl~ 241 (641)
T KOG0772|consen 168 KIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQI---NSLQYSVTGDQIL-VVSGS--AQAKLL 241 (641)
T ss_pred eEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCccccccc---ceeeecCCCCeEE-EEecC--cceeEE
Confidence 478888886 7799999999999999987411 1 11111112221 2589999998743 34444 568999
Q ss_pred eCCCCc---EEecccccCCcceeeeeeeeeeccceeEEEEcCCc---eEEEEcCCcEEEEECCCCce----EEEEeeccC
Q 046773 266 DRQAEE---VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE---SAVACTSSRVITFDLRNQGM----VLGERGYGR 335 (453)
Q Consensus 266 D~~tg~---~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~---~~vas~d~tIrlWDl~t~~~----~~~~~g~~~ 335 (453)
|-..-+ +..|. -.+.....-.||+..+++..++|.. .+.+|.|+|+||||+..-+. +++....+.
T Consensus 242 DRdG~~~~e~~KGD-----QYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 242 DRDGFEIVEFSKGD-----QYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred ccCCceeeeeeccc-----hhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence 976655 22331 1122222346899999999998854 34556689999999986432 222111122
Q ss_pred CeE--EEEEEecCCEEEEEeCCCccccCcceEEEEEcCCC--e-eEEEEEecCC--CeeEEEEeeCCCeEEEEeC-CeEE
Q 046773 336 GLY--VTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTF--E-EVCRFSLRAD--RNVNVMGCMNQGYALMCVE-GVIR 407 (453)
Q Consensus 336 ~~~--v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg--~-~v~~l~~~~~--~v~~~~~~~~~~~lls~s~-~tIr 407 (453)
.+. +.++++++..+|.|..|| .|.+|+...- . ..+.-..|.. .+.++.|+.+|.+|++-+. .++|
T Consensus 317 Rv~~tsC~~nrdg~~iAagc~DG-------SIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLK 389 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGKLIAAGCLDG-------SIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLK 389 (641)
T ss_pred ccCceeeecCCCcchhhhcccCC-------ceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCcee
Confidence 233 344788888999999999 9999996421 1 1122234443 5889999999999998776 9999
Q ss_pred EEECCC-CeEEEEecccCCc-e-EE-EEecCCCEEEEE
Q 046773 408 VWEVEG-GEYMYSFRERIGE-E-VI-AFVGDDRHVAAS 441 (453)
Q Consensus 408 lWD~~t-G~~l~tL~gh~~~-~-V~-a~s~d~~~lasg 441 (453)
|||+.. .+||.+..|-... . -. +||||.+.|++|
T Consensus 390 vWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TG 427 (641)
T KOG0772|consen 390 VWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTG 427 (641)
T ss_pred eeeccccccchhhhcCCCccCCCCccccCCCceEEEec
Confidence 999987 5777766553221 0 12 899999999987
No 121
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=2.1e-15 Score=145.77 Aligned_cols=249 Identities=12% Similarity=0.129 Sum_probs=160.4
Q ss_pred EEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecCCcceEEeee---ccee-cCceEEEEeCCCceee
Q 046773 178 RTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDVANETRTAHF---GSVM-DDGVLIDFTGCSRYWV 251 (453)
Q Consensus 178 ~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g~~~~~~~~---~~v~-~~~~~v~Fs~dg~~~~ 251 (453)
.+|+||.. .|++++|+ |..|||++.|++|+||++.. .+.+.|. ..+. +-...|.|+||-+-+
T Consensus 80 ~~LKgH~~--------~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~D---F~~~eHr~~R~nve~dhpT~V~FapDc~s~- 147 (420)
T KOG2096|consen 80 SVLKGHKK--------EVTDVAFSSDGKKLATISGDRSIRLWDVRD---FENKEHRCIRQNVEYDHPTRVVFAPDCKSV- 147 (420)
T ss_pred hhhhccCC--------ceeeeEEcCCCceeEEEeCCceEEEEecch---hhhhhhhHhhccccCCCceEEEECCCcceE-
Confidence 35778765 68888885 78999999999999999976 2222221 0000 111258999997753
Q ss_pred EEEEeeCCCeEEEeeCCCCcEEecccccCCcceee-eeeeeeeccceeEEEEcCCce--EEEEcCCcEEEEECCCCceEE
Q 046773 252 GLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMG-WRMLTEFTEFVGRVRVTSHES--AVACTSSRVITFDLRNQGMVL 328 (453)
Q Consensus 252 ~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~-w~~l~~h~~~v~~v~~s~~~~--~vas~d~tIrlWDl~t~~~~~ 328 (453)
+++.-...+++++-+...+- | .++-+-...+ .+.-+.|.-.+-.+-+.++.. +++|.|.+|.|||++ |+.+.
T Consensus 148 -vv~~~~g~~l~vyk~~K~~d--G-~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~ 222 (420)
T KOG2096|consen 148 -VVSVKRGNKLCVYKLVKKTD--G-SGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQ 222 (420)
T ss_pred -EEEEccCCEEEEEEeeeccc--C-CCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceee
Confidence 44555678899997654331 1 0000000000 012234544454555555553 455667889999999 66554
Q ss_pred EEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcC---CC-----eeEEEEEecCCCeeEEEEeeCCCeEEE
Q 046773 329 GERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVD---TF-----EEVCRFSLRADRNVNVMGCMNQGYALM 400 (453)
Q Consensus 329 ~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~---tg-----~~v~~l~~~~~~v~~~~~~~~~~~lls 400 (453)
........++-.+++|+|+.++++..-. +++||..- .| ..+..|.+|...|..++|+++++++++
T Consensus 223 ~idtnq~~n~~aavSP~GRFia~~gFTp-------DVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vt 295 (420)
T KOG2096|consen 223 SIDTNQSSNYDAAVSPDGRFIAVSGFTP-------DVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVT 295 (420)
T ss_pred eeccccccccceeeCCCCcEEEEecCCC-------CceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEE
Confidence 4322233455578999999998887777 89999753 22 245567888888999999999999998
Q ss_pred EeC-CeEEEEECCC----C---eEEEEec--ccC--CceEE-EEecCCCEEEEEeCCcEEEEe
Q 046773 401 CVE-GVIRVWEVEG----G---EYMYSFR--ERI--GEEVI-AFVGDDRHVAASCGTNIHLWD 450 (453)
Q Consensus 401 ~s~-~tIrlWD~~t----G---~~l~tL~--gh~--~~~V~-a~s~d~~~lasg~D~~IklWD 450 (453)
.|- |++||||+.- + +.|.+.+ -|. +..+. +++|.++.||.+...+++++.
T Consensus 296 vSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~ 358 (420)
T KOG2096|consen 296 VSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFA 358 (420)
T ss_pred EecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEE
Confidence 886 9999999863 2 2233331 121 22366 889999999877556677664
No 122
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.69 E-value=4e-15 Score=142.57 Aligned_cols=168 Identities=19% Similarity=0.249 Sum_probs=122.8
Q ss_pred EEEEEecC---CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCC
Q 046773 147 CRCLTLSD---LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVA 223 (453)
Q Consensus 147 v~~lafs~---~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g 223 (453)
|.++++=| -...|+|+|+|+||||..|-+..-+|+-. +.+ ++-+.+.++.+--.+|.|..|-.|++-|+.+ |
T Consensus 104 iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me-~~V---YshamSp~a~sHcLiA~gtr~~~VrLCDi~S-G 178 (397)
T KOG4283|consen 104 ISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKME-GKV---YSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS-G 178 (397)
T ss_pred eeeeEEeeecCceeecccccceEEEeecccceeeEEeecC-cee---ehhhcChhhhcceEEEEecCCCcEEEEeccC-C
Confidence 67777644 47899999999999999999998887632 111 1223333444455788888899999999998 6
Q ss_pred --cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc-EEecccccCCcceee--eeeeeeecccee
Q 046773 224 --NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE-VFVGGDLTDHNTVMG--WRMLTEFTEFVG 298 (453)
Q Consensus 224 --~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~-~~~g~~l~~~~~v~~--w~~l~~h~~~v~ 298 (453)
-+++.+|.+.|. .|..+|...| .||+||.|++||+||++.-. +|.. |..+++... .++=+.|.+.|+
T Consensus 179 s~sH~LsGHr~~vl----aV~Wsp~~e~--vLatgsaDg~irlWDiRrasgcf~~--lD~hn~k~~p~~~~n~ah~gkvn 250 (397)
T KOG4283|consen 179 SFSHTLSGHRDGVL----AVEWSPSSEW--VLATGSADGAIRLWDIRRASGCFRV--LDQHNTKRPPILKTNTAHYGKVN 250 (397)
T ss_pred cceeeeccccCceE----EEEeccCcee--EEEecCCCceEEEEEeecccceeEE--eecccCccCccccccccccceee
Confidence 689999988775 5899999998 59999999999999998642 3321 111221111 123457889999
Q ss_pred EEEEcCCce--EEEEcCCcEEEEECCCCceE
Q 046773 299 RVRVTSHES--AVACTSSRVITFDLRNQGMV 327 (453)
Q Consensus 299 ~v~~s~~~~--~vas~d~tIrlWDl~t~~~~ 327 (453)
.++++.++. ++.+.|..+|+|+.++|.-.
T Consensus 251 gla~tSd~~~l~~~gtd~r~r~wn~~~G~nt 281 (397)
T KOG4283|consen 251 GLAWTSDARYLASCGTDDRIRVWNMESGRNT 281 (397)
T ss_pred eeeecccchhhhhccCccceEEeecccCccc
Confidence 999987764 44456889999999998543
No 123
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=3.2e-15 Score=154.07 Aligned_cols=277 Identities=14% Similarity=0.126 Sum_probs=176.2
Q ss_pred CCCCCCCCCeEEEEEEecCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcC--C-eEEEEeCCC
Q 046773 136 PSDVDNPDGLTCRCLTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITD--S-QLIFATLDG 212 (453)
Q Consensus 136 ~~gh~~~d~v~v~~lafs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g--~-~LasgS~D~ 212 (453)
..||+ +-|.+.++.+++.+|||||.|||||||.+.||+|+++..-. ..|.+|+|.+ + -++..+.+.
T Consensus 396 yrGHt--g~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d---------~~I~~vaw~P~~~~~vLAvA~~~ 464 (733)
T KOG0650|consen 396 YRGHT--GLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD---------SEIRSVAWNPLSDLCVLAVAVGE 464 (733)
T ss_pred EeccC--CeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec---------ceeEEEEecCCCCceeEEEEecC
Confidence 45998 44444445556789999999999999999999999998621 2577777753 2 233333333
Q ss_pred CEEE---------------------------------EEeec-----CCcceEEeeecceecCceEEEEeCCCceeeEEE
Q 046773 213 DIHV---------------------------------AVIDD-----VANETRTAHFGSVMDDGVLIDFTGCSRYWVGLY 254 (453)
Q Consensus 213 tIkv---------------------------------Wd~~~-----~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~La 254 (453)
++-| |.-.. .|+++...|...| ..|..+.+|++++.+.
T Consensus 465 ~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i----~~vtWHrkGDYlatV~ 540 (733)
T KOG0650|consen 465 CVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSI----RQVTWHRKGDYLATVM 540 (733)
T ss_pred ceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCcc----ceeeeecCCceEEEec
Confidence 3222 21100 0000000111111 1367888888754333
Q ss_pred EeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc-eEEEEcCCcEEEEECCCCceEEEE-ee
Q 046773 255 AGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE-SAVACTSSRVITFDLRNQGMVLGE-RG 332 (453)
Q Consensus 255 SgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~-~~vas~d~tIrlWDl~t~~~~~~~-~g 332 (453)
--+..+.|-|.++..+.... .++--.+.|.+|.|+|.. .+..+....|||+||..+...+.+ .|
T Consensus 541 ~~~~~~~VliHQLSK~~sQ~--------------PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg 606 (733)
T KOG0650|consen 541 PDSGNKSVLIHQLSKRKSQS--------------PFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTG 606 (733)
T ss_pred cCCCcceEEEEecccccccC--------------chhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcC
Confidence 23344667777776554211 011223457889999754 445566678999999875433332 22
Q ss_pred ccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCC-eeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEE-
Q 046773 333 YGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTF-EEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVW- 409 (453)
Q Consensus 333 ~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg-~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlW- 409 (453)
...+.-.++++.|+.++.+|.|+ -+...|++-. ++.+++..|+..++++++++---.++++++ +++.|.
T Consensus 607 -~kwiS~msihp~GDnli~gs~d~-------k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 607 -SKWISSMSIHPNGDNLILGSYDK-------KMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred -CeeeeeeeecCCCCeEEEecCCC-------eeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 22233456678889999999999 7777788754 566778889999999999876666677777 888777
Q ss_pred -----ECCCC---eEEEEecccCCc---eEE--EEecCCCEEEEE-eCCcEEEE
Q 046773 410 -----EVEGG---EYMYSFRERIGE---EVI--AFVGDDRHVAAS-CGTNIHLW 449 (453)
Q Consensus 410 -----D~~tG---~~l~tL~gh~~~---~V~--a~s~d~~~lasg-~D~~IklW 449 (453)
|+-.. -.+..|+||.-. .|- .|.|...+|.|+ .|++|+||
T Consensus 679 g~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 679 GMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 33222 336678888421 133 578999999998 99999998
No 124
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=2.1e-14 Score=138.38 Aligned_cols=99 Identities=15% Similarity=0.192 Sum_probs=68.3
Q ss_pred EEEEEeCCCccccCcceEEEEEcCCC----eeEEEEEecCCCeeEEEEeeCCC---eEEEEeC--CeEEEEECCCC----
Q 046773 348 AYIVVENRELENQNRRLAIVRRVDTF----EEVCRFSLRADRNVNVMGCMNQG---YALMCVE--GVIRVWEVEGG---- 414 (453)
Q Consensus 348 ~l~s~s~dg~~~~~~~~i~Iw~~~tg----~~v~~l~~~~~~v~~~~~~~~~~---~lls~s~--~tIrlWD~~tG---- 414 (453)
.++.++.+..+ +-+.++||.-+.+ ..+.++..+++-|+.+.|.|+-+ ++++.+. | |+||.++.-
T Consensus 186 ~iAvgs~e~a~--~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i 262 (361)
T KOG2445|consen 186 LIAVGSDEDAP--HLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAI 262 (361)
T ss_pred eEEEEcccCCc--cccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchh
Confidence 56666665322 2236788865543 24556677888899999998743 4444443 6 999999831
Q ss_pred ----------------eEEEEecccCCceEEEE--ecCCCEEEEE-eCCcEEEEe
Q 046773 415 ----------------EYMYSFRERIGEEVIAF--VGDDRHVAAS-CGTNIHLWD 450 (453)
Q Consensus 415 ----------------~~l~tL~gh~~~~V~a~--s~d~~~lasg-~D~~IklWD 450 (453)
+.+..|.+|.+. ||.+ .--|.+|+|. .||+||||.
T Consensus 263 ~~ee~~~~~~~~~l~v~~vs~~~~H~~~-VWrv~wNmtGtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 263 EEEEVLAPDLMTDLPVEKVSELDDHNGE-VWRVRWNMTGTILSSTGDDGCVRLWK 316 (361)
T ss_pred hhhcccCCCCccccceEEeeeccCCCCc-eEEEEEeeeeeEEeecCCCceeeehh
Confidence 224446788888 9954 4688899988 999999996
No 125
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=2.8e-15 Score=155.73 Aligned_cols=219 Identities=13% Similarity=0.179 Sum_probs=165.6
Q ss_pred EEEEeCCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcce
Q 046773 205 LIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTV 284 (453)
Q Consensus 205 LasgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v 284 (453)
++.-+.+..+.+|+..+ | .+...+... .....+|.++++|+. ||.|-.+++|.|||+++.+..
T Consensus 190 ~laValg~~vylW~~~s-~-~v~~l~~~~-~~~vtSv~ws~~G~~---LavG~~~g~v~iwD~~~~k~~----------- 252 (484)
T KOG0305|consen 190 VLAVALGQSVYLWSASS-G-SVTELCSFG-EELVTSVKWSPDGSH---LAVGTSDGTVQIWDVKEQKKT----------- 252 (484)
T ss_pred eEEEEecceEEEEecCC-C-ceEEeEecC-CCceEEEEECCCCCE---EEEeecCCeEEEEehhhcccc-----------
Confidence 34445667789999877 5 222222211 112235999999996 899999999999999886632
Q ss_pred eeeeeeee-eccceeEEEEcCCceEEEEcCCcEEEEECCCCceEEE-EeeccCCeEEEEEEecCCEEEEEeCCCccccCc
Q 046773 285 MGWRMLTE-FTEFVGRVRVTSHESAVACTSSRVITFDLRNQGMVLG-ERGYGRGLYVTSVDVNAEAYIVVENRELENQNR 362 (453)
Q Consensus 285 ~~w~~l~~-h~~~v~~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~-~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~ 362 (453)
.++.+ |...|.+++.....+.+++.++.|..+|++..+.... ..+|.+.+-...+++++..++++..|.
T Consensus 253 ---~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN------ 323 (484)
T KOG0305|consen 253 ---RTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDN------ 323 (484)
T ss_pred ---ccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCcc------
Confidence 23445 8889999998876666667789999999998765444 466777666667788899999988888
Q ss_pred ceEEEEEcCCCeeEEEEEecCCCeeEEEEeeC-CCeEEEEeC---CeEEEEECCCCeEEEEecccCCceEE--EEecCCC
Q 046773 363 RLAIVRRVDTFEEVCRFSLRADRNVNVMGCMN-QGYALMCVE---GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDR 436 (453)
Q Consensus 363 ~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~-~~~lls~s~---~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~ 436 (453)
.+.|||....+.+..+..|...|..+++||- .+.|+++++ ++||+||+.+|+++..+. ++..|. .+++..+
T Consensus 324 -~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd--tgsQVcsL~Wsk~~k 400 (484)
T KOG0305|consen 324 -VVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD--TGSQVCSLIWSKKYK 400 (484)
T ss_pred -ceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc--cCCceeeEEEcCCCC
Confidence 9999999888888889999999999999995 445555544 899999999999998874 444465 5578887
Q ss_pred EEEEE---eCCcEEEEecC
Q 046773 437 HVAAS---CGTNIHLWDFG 452 (453)
Q Consensus 437 ~lasg---~D~~IklWDl~ 452 (453)
-|+++ .++.|.||+..
T Consensus 401 Ei~sthG~s~n~i~lw~~p 419 (484)
T KOG0305|consen 401 ELLSTHGYSENQITLWKYP 419 (484)
T ss_pred EEEEecCCCCCcEEEEecc
Confidence 77664 78899999873
No 126
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.68 E-value=1.6e-14 Score=153.59 Aligned_cols=186 Identities=12% Similarity=0.120 Sum_probs=134.5
Q ss_pred EEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEEcCCcEEE
Q 046773 241 IDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACTSSRVIT 318 (453)
Q Consensus 241 v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrl 318 (453)
|+.+++|.+ .+-|+..++|-++|+++|.... +.. .-..|..+|..|++++.+ +++++.++-++.
T Consensus 454 v~vs~CGNF---~~IG~S~G~Id~fNmQSGi~r~--sf~---------~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkf 519 (910)
T KOG1539|consen 454 VCVSFCGNF---VFIGYSKGTIDRFNMQSGIHRK--SFG---------DSPAHKGEVTGLAVDGTNRLLVSAGADGILKF 519 (910)
T ss_pred EEEeccCce---EEEeccCCeEEEEEcccCeeec--ccc---------cCccccCceeEEEecCCCceEEEccCcceEEE
Confidence 455556655 3456667777777777776210 000 013677899999998655 566677899999
Q ss_pred EECCCCceEEEE-eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCe
Q 046773 319 FDLRNQGMVLGE-RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGY 397 (453)
Q Consensus 319 WDl~t~~~~~~~-~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~ 397 (453)
||......+... .++.... ....-..+.++.+-.|- .|+|.|..|-+-++.|.+|.+.+..+.|+|+|++
T Consensus 520 w~f~~k~l~~~l~l~~~~~~--iv~hr~s~l~a~~~ddf-------~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrW 590 (910)
T KOG1539|consen 520 WDFKKKVLKKSLRLGSSITG--IVYHRVSDLLAIALDDF-------SIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRW 590 (910)
T ss_pred EecCCcceeeeeccCCCcce--eeeeehhhhhhhhcCce-------eEEEEEchhhhhhHHhhccccceeeeEeCCCCcE
Confidence 999986544333 3333222 22333345566677777 8999999998888999999999999999999999
Q ss_pred EEEEeC-CeEEEEECCCCeEEEEecccCCceEE-EEecCCCEEEEE-eC-CcEEEEe
Q 046773 398 ALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI-AFVGDDRHVAAS-CG-TNIHLWD 450 (453)
Q Consensus 398 lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~-a~s~d~~~lasg-~D-~~IklWD 450 (453)
+++++- ++||+||+.||.++--|.--... +. +|+|+|.+||+. .| .-|.||-
T Consensus 591 lisasmD~tIr~wDlpt~~lID~~~vd~~~-~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 591 LISASMDSTIRTWDLPTGTLIDGLLVDSPC-TSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred EEEeecCCcEEEEeccCcceeeeEecCCcc-eeeEECCCCCEEEEEEecCceEEEEE
Confidence 998876 99999999999998777322222 33 789999999999 77 7899994
No 127
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=3.7e-15 Score=150.00 Aligned_cols=213 Identities=13% Similarity=0.198 Sum_probs=155.6
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecC
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDV 222 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~ 222 (453)
|.||+-++ .+|+.|.--+.|.||.+.||+.+.++.+|-. .|++|.|+ |..++|||.|+.|.+|.+..
T Consensus 84 v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ--------~ITcL~fs~dgs~iiTgskDg~V~vW~l~~- 154 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQ--------SITCLKFSDDGSHIITGSKDGAVLVWLLTD- 154 (476)
T ss_pred eeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhcc--------ceeEEEEeCCCcEEEecCCCccEEEEEEEe-
Confidence 78998875 5788777899999999999999999987643 78999985 56899999999999998754
Q ss_pred CcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEE
Q 046773 223 ANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRV 302 (453)
Q Consensus 223 g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~ 302 (453)
|+++..|+++ +- .+.+.+|+-+|..+.+
T Consensus 155 ------------------------------lv~a~~~~~~-----~p-----------------~~~f~~HtlsITDl~i 182 (476)
T KOG0646|consen 155 ------------------------------LVSADNDHSV-----KP-----------------LHIFSDHTLSITDLQI 182 (476)
T ss_pred ------------------------------ecccccCCCc-----cc-----------------eeeeccCcceeEEEEe
Confidence 3344444311 00 1223355666666666
Q ss_pred cCC----ceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCC------
Q 046773 303 TSH----ESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDT------ 372 (453)
Q Consensus 303 s~~----~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~t------ 372 (453)
.+. .++++|-|.|||+||+..+..+++.... .......++|.......|+.+| .|-+-+...
T Consensus 183 g~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp-~si~av~lDpae~~~yiGt~~G-------~I~~~~~~~~~~~~~ 254 (476)
T KOG0646|consen 183 GSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP-SSIKAVALDPAERVVYIGTEEG-------KIFQNLLFKLSGQSA 254 (476)
T ss_pred cCCCccceEEEecCCceEEEEEeccceeeEEEecC-CcceeEEEcccccEEEecCCcc-------eEEeeehhcCCcccc
Confidence 543 2577788999999999999877665332 1233456788888889999999 443333221
Q ss_pred ----------CeeEEEEEecCC--CeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE
Q 046773 373 ----------FEEVCRFSLRAD--RNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI 429 (453)
Q Consensus 373 ----------g~~v~~l~~~~~--~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~ 429 (453)
+..+..+.+|.+ .|..++.+.|+..|++++. |+|.|||+.+-+|++++.--.+. |+
T Consensus 255 ~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgp-Vt 323 (476)
T KOG0646|consen 255 GVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGP-VT 323 (476)
T ss_pred cccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccc-cc
Confidence 234556777777 6889999999998888877 99999999999999998644445 65
No 128
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.66 E-value=4.2e-15 Score=154.21 Aligned_cols=291 Identities=17% Similarity=0.176 Sum_probs=180.1
Q ss_pred CCeEEEE--EEecC-----CEEEEEeCCCcEEEEECCCCeEE---EEecCCCCCccccccceEEEEEE--cCCeEEEEeC
Q 046773 143 DGLTCRC--LTLSD-----LYLACGFADGAVRLFDLTTRLHV---RTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATL 210 (453)
Q Consensus 143 d~v~v~~--lafs~-----~~LaSGS~D~TIrlWD~~tg~~~---~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~ 210 (453)
|++++.- ..|+. .+||-+-.|+-|.|+|.+...-. +.|+.... ++ .+|-.+.. ...+|+++|-
T Consensus 46 ~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~a-H~----nAifDl~wapge~~lVsasG 120 (720)
T KOG0321|consen 46 DGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLA-HK----NAIFDLKWAPGESLLVSASG 120 (720)
T ss_pred CCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhccccc-cc----ceeEeeccCCCceeEEEccC
Confidence 4555665 45653 47999999999999998765432 22222111 11 13433432 2457999999
Q ss_pred CCCEEEEEeecC---CcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc---------EEec-cc
Q 046773 211 DGDIHVAVIDDV---ANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE---------VFVG-GD 277 (453)
Q Consensus 211 D~tIkvWd~~~~---g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~---------~~~g-~~ 277 (453)
|.|||+||+.+. |...+.+|++.+- +++|.|+..- .+++|+.|+.|.|||++-.. ++.+ |.
T Consensus 121 DsT~r~Wdvk~s~l~G~~~~~GH~~Svk----S~cf~~~n~~--vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n 194 (720)
T KOG0321|consen 121 DSTIRPWDVKTSRLVGGRLNLGHTGSVK----SECFMPTNPA--VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHN 194 (720)
T ss_pred Cceeeeeeeccceeecceeecccccccc----hhhhccCCCc--ceeeccCCCcEEEEEEeccchhhHHHHhhhhhcccc
Confidence 999999999873 2345667887764 4789888774 58999999999999987321 1111 11
Q ss_pred c-cCCcc-----eeeeeee-eeeccceeEEEEc-CCceEEEEc-CCcEEEEECCCCceEEEE------eeccC-----Ce
Q 046773 278 L-TDHNT-----VMGWRML-TEFTEFVGRVRVT-SHESAVACT-SSRVITFDLRNQGMVLGE------RGYGR-----GL 337 (453)
Q Consensus 278 l-~~~~~-----v~~w~~l-~~h~~~v~~v~~s-~~~~~vas~-d~tIrlWDl~t~~~~~~~------~g~~~-----~~ 337 (453)
. +.|.. ...|..- ....+.|..|.|- .+.+++++. |++||+|||+...+.... ..+.+ +.
T Consensus 195 ~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~ 274 (720)
T KOG0321|consen 195 TAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQ 274 (720)
T ss_pred CCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeee
Confidence 1 01111 1111100 0112335555553 445666665 899999999987665331 11222 22
Q ss_pred EEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCC--eeEEEEEecCCCeeEE--EEeeCCCeEEEEeC-CeEEEEECC
Q 046773 338 YVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTF--EEVCRFSLRADRNVNV--MGCMNQGYALMCVE-GVIRVWEVE 412 (453)
Q Consensus 338 ~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg--~~v~~l~~~~~~v~~~--~~~~~~~~lls~s~-~tIrlWD~~ 412 (453)
...+++-+|.+|.....|+ +|-.|++.+- .++..+.++...-..+ ..++++.++++++. ..+.+|.+.
T Consensus 275 ~nL~lDssGt~L~AsCtD~-------sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs 347 (720)
T KOG0321|consen 275 VNLILDSSGTYLFASCTDN-------SIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVS 347 (720)
T ss_pred EEEEecCCCCeEEEEecCC-------cEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeec
Confidence 2344566678877666788 9999988752 2233333332221111 23578899998887 999999999
Q ss_pred CCeE-EEEecccCCceEEEE----ecCCCEEEEEeCCcEEEEecC
Q 046773 413 GGEY-MYSFRERIGEEVIAF----VGDDRHVAASCGTNIHLWDFG 452 (453)
Q Consensus 413 tG~~-l~tL~gh~~~~V~a~----s~d~~~lasg~D~~IklWDl~ 452 (453)
+-+. ...|.||+-. |.++ +++...+.++.|.+++||++.
T Consensus 348 ~~e~~~~~l~Ght~e-Vt~V~w~pS~~t~v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 348 SPEAPPALLLGHTRE-VTTVRWLPSATTPVATCSDDFRVKIWRLS 391 (720)
T ss_pred CccCChhhhhCcceE-EEEEeeccccCCCceeeccCcceEEEecc
Confidence 8644 5567789877 7743 345555555599999999973
No 129
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.66 E-value=6.5e-15 Score=147.49 Aligned_cols=233 Identities=18% Similarity=0.216 Sum_probs=144.9
Q ss_pred CEEEEEeCCCcEEEEECCCCeEE---EEec----------CCCCCccccccceEEEEEEc---CCeEEEEeCCCCEEEEE
Q 046773 155 LYLACGFADGAVRLFDLTTRLHV---RTFR----------PQHSDRLGQFSRAVSGIIIT---DSQLIFATLDGDIHVAV 218 (453)
Q Consensus 155 ~~LaSGS~D~TIrlWD~~tg~~~---~tl~----------gh~~~~~~~~s~~V~~i~f~---g~~LasgS~D~tIkvWd 218 (453)
+++|-|..|..|-|||+.--..+ .+|. +-.......|+.+|-++++. -..|||||.|+||++||
T Consensus 193 NyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD 272 (463)
T KOG0270|consen 193 NYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWD 272 (463)
T ss_pred ceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEE
Confidence 69999999999999998533221 1222 00000001123345445554 24799999999999999
Q ss_pred eecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccc
Q 046773 219 IDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEF 296 (453)
Q Consensus 219 ~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~ 296 (453)
+++ | ..++..|.+.|. .+.|+|.--. .|.+||+|++|+|-|.+.-.. ...-|. ..+.
T Consensus 273 ~~~-g~p~~s~~~~~k~Vq----~l~wh~~~p~--~LLsGs~D~~V~l~D~R~~~~----------s~~~wk----~~g~ 331 (463)
T KOG0270|consen 273 VDT-GKPKSSITHHGKKVQ----TLEWHPYEPS--VLLSGSYDGTVALKDCRDPSN----------SGKEWK----FDGE 331 (463)
T ss_pred cCC-CCcceehhhcCCcee----EEEecCCCce--EEEeccccceEEeeeccCccc----------cCceEE----eccc
Confidence 998 5 334444555543 4788887443 488999999999999985221 111132 2345
Q ss_pred eeEEEEcCC---ceEEEEcCCcEEEEECCCC-ceEEEEeeccCCeEEEEEEec---CCEEEEEeCCCccccCcceEEEEE
Q 046773 297 VGRVRVTSH---ESAVACTSSRVITFDLRNQ-GMVLGERGYGRGLYVTSVDVN---AEAYIVVENRELENQNRRLAIVRR 369 (453)
Q Consensus 297 v~~v~~s~~---~~~vas~d~tIrlWDl~t~-~~~~~~~g~~~~~~v~~~~~~---g~~l~s~s~dg~~~~~~~~i~Iw~ 369 (453)
|-.|+.++. ..+++..|++++=.|+++. +++.+...|... |.+++++ ++.++++|.++ ++++|+
T Consensus 332 VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~--ISgl~~n~~~p~~l~t~s~d~-------~Vklw~ 402 (463)
T KOG0270|consen 332 VEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDE--ISGLSVNIQTPGLLSTASTDK-------VVKLWK 402 (463)
T ss_pred eEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCC--cceEEecCCCCcceeeccccc-------eEEEEe
Confidence 666776543 3455567799999999986 566666666554 4555433 56788999999 999998
Q ss_pred cCCCee--EEEEEecCCCeeEEEEeeCCCeEEEEeC--CeEEEEECCCCeEE
Q 046773 370 VDTFEE--VCRFSLRADRNVNVMGCMNQGYALMCVE--GVIRVWEVEGGEYM 417 (453)
Q Consensus 370 ~~tg~~--v~~l~~~~~~v~~~~~~~~~~~lls~s~--~tIrlWD~~tG~~l 417 (453)
++.-.+ +..-.+.-....+.+.+|+--+.++.++ +.+||||+.++...
T Consensus 403 ~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 403 FDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 874321 2111111111233444555445555444 77999999886543
No 130
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.65 E-value=2.5e-15 Score=150.47 Aligned_cols=200 Identities=16% Similarity=0.154 Sum_probs=135.9
Q ss_pred CCCCCCCCeEEEEEEecC---CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc---CCeEEEEeC
Q 046773 137 SDVDNPDGLTCRCLTLSD---LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT---DSQLIFATL 210 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~---~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~---g~~LasgS~ 210 (453)
.||++ . |.+|+++. +.|||||.|+||+|||+.+|+|.+++. ||+ ..|.+++|. +..|++||.
T Consensus 240 ~gHTd--a--vl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~-~~~-------k~Vq~l~wh~~~p~~LLsGs~ 307 (463)
T KOG0270|consen 240 SGHTD--A--VLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT-HHG-------KKVQTLEWHPYEPSVLLSGSY 307 (463)
T ss_pred ccchH--H--HHHHHhccccceeEEecCCCceEEEEEcCCCCcceehh-hcC-------CceeEEEecCCCceEEEeccc
Confidence 48994 4 67888886 589999999999999999999999998 444 268888875 678999999
Q ss_pred CCCEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCC-cEEecccccCCcceeeee
Q 046773 211 DGDIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAE-EVFVGGDLTDHNTVMGWR 288 (453)
Q Consensus 211 D~tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg-~~~~g~~l~~~~~v~~w~ 288 (453)
|+++++-|.+.+. .....-..+.| ..|+..|.... ..++++.|++|+=.|++.- +.+ .
T Consensus 308 D~~V~l~D~R~~~~s~~~wk~~g~V----Ekv~w~~~se~--~f~~~tddG~v~~~D~R~~~~~v--------------w 367 (463)
T KOG0270|consen 308 DGTVALKDCRDPSNSGKEWKFDGEV----EKVAWDPHSEN--SFFVSTDDGTVYYFDIRNPGKPV--------------W 367 (463)
T ss_pred cceEEeeeccCccccCceEEeccce----EEEEecCCCce--eEEEecCCceEEeeecCCCCCce--------------e
Confidence 9999999977432 11111111222 23555555442 3567799999999999874 422 3
Q ss_pred eeeeeccceeEEEEc---CCceEEEEcCCcEEEEECCCCceEEEEeeccCCe-EEEEEEecCC---EEEEEeCCCccccC
Q 046773 289 MLTEFTEFVGRVRVT---SHESAVACTSSRVITFDLRNQGMVLGERGYGRGL-YVTSVDVNAE---AYIVVENRELENQN 361 (453)
Q Consensus 289 ~l~~h~~~v~~v~~s---~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~-~v~~~~~~g~---~l~s~s~dg~~~~~ 361 (453)
++..|.++|.++.++ |..+.++|.|.+|+||++..-.--.. ..|.-.. ...||+++++ .++.+...+
T Consensus 368 t~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v-~~~~~~~~rl~c~~~~~~~a~~la~GG~k~----- 441 (463)
T KOG0270|consen 368 TLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSV-KEHSFKLGRLHCFALDPDVAFTLAFGGEKA----- 441 (463)
T ss_pred EEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccc-ccccccccceeecccCCCcceEEEecCccc-----
Confidence 578899999999987 44466778889999999864321011 1111000 1345555543 345444444
Q ss_pred cceEEEEEcCCCeeE
Q 046773 362 RRLAIVRRVDTFEEV 376 (453)
Q Consensus 362 ~~~i~Iw~~~tg~~v 376 (453)
.++|||.-+...+
T Consensus 442 --~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 442 --VLRVWDIFTNSPV 454 (463)
T ss_pred --eEEEeecccChhH
Confidence 7899998876443
No 131
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=1.7e-13 Score=143.24 Aligned_cols=265 Identities=11% Similarity=0.064 Sum_probs=191.3
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCeE-EEEecCCCCCccccccceEEEEEEc-CCeEEEEeCCCCEEEEEeecC
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRLH-VRTFRPQHSDRLGQFSRAVSGIIIT-DSQLIFATLDGDIHVAVIDDV 222 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~-~~tl~gh~~~~~~~~s~~V~~i~f~-g~~LasgS~D~tIkvWd~~~~ 222 (453)
|.||||+. +.||.+=.|++|-||++..+=+ .+++.|+. .++|.+|++. +.+|.|.+.+++|--||+.+
T Consensus 28 I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~-------drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~- 99 (691)
T KOG2048|consen 28 IVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPE-------DRSIESLAWAEGGRLFSSGLSGSITEWDLHT- 99 (691)
T ss_pred eEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCC-------CCceeeEEEccCCeEEeecCCceEEEEeccc-
Confidence 78999986 5899999999999999988754 45565543 3578999997 78899999999999999987
Q ss_pred CcceEEeee---cceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc-EEecccccCCcceeeeeeeeeecccee
Q 046773 223 ANETRTAHF---GSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE-VFVGGDLTDHNTVMGWRMLTEFTEFVG 298 (453)
Q Consensus 223 g~~~~~~~~---~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~-~~~g~~l~~~~~v~~w~~l~~h~~~v~ 298 (453)
+ .++..+. +.+. .++.+|.+.. |+.|+.|+.+...++..+. ++. ..|.--++.|-
T Consensus 100 l-k~~~~~d~~gg~IW----siai~p~~~~---l~IgcddGvl~~~s~~p~~I~~~-------------r~l~rq~sRvL 158 (691)
T KOG2048|consen 100 L-KQKYNIDSNGGAIW----SIAINPENTI---LAIGCDDGVLYDFSIGPDKITYK-------------RSLMRQKSRVL 158 (691)
T ss_pred C-ceeEEecCCCccee----EEEeCCccce---EEeecCCceEEEEecCCceEEEE-------------eecccccceEE
Confidence 4 3333331 2222 3677777764 7888999988888887777 432 12333467899
Q ss_pred EEEEcCCce--EEEEcCCcEEEEECCCCceEEEE-----e-eccCCeEEEEE-EecCCEEEEEeCCCccccCcceEEEEE
Q 046773 299 RVRVTSHES--AVACTSSRVITFDLRNQGMVLGE-----R-GYGRGLYVTSV-DVNAEAYIVVENRELENQNRRLAIVRR 369 (453)
Q Consensus 299 ~v~~s~~~~--~vas~d~tIrlWDl~t~~~~~~~-----~-g~~~~~~v~~~-~~~g~~l~s~s~dg~~~~~~~~i~Iw~ 369 (453)
+|.++|+.. +.+|.|+.||+||+.++..++.. . .......|.++ ....+.+++|.+.| ++++||
T Consensus 159 slsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G-------~V~FWd 231 (691)
T KOG2048|consen 159 SLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAG-------TVTFWD 231 (691)
T ss_pred EEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCc-------eEEEEc
Confidence 999999876 66678999999999998776621 1 12234556665 35677899999999 999999
Q ss_pred cCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEe-CCeEEEEECCCCeE--EEE--ecccCCceEEEEecCCCEEEEE-eC
Q 046773 370 VDTFEEVCRFSLRADRNVNVMGCMNQGYALMCV-EGVIRVWEVEGGEY--MYS--FRERIGEEVIAFVGDDRHVAAS-CG 443 (453)
Q Consensus 370 ~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s-~~tIrlWD~~tG~~--l~t--L~gh~~~~V~a~s~d~~~lasg-~D 443 (453)
...|..++.+..|...|..++...+..++.+++ ++.|-..-..+++. +.. ...|... |.++.--+..|++| .|
T Consensus 232 ~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hd-vrs~av~~~~l~sgG~d 310 (691)
T KOG2048|consen 232 SIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHD-VRSMAVIENALISGGRD 310 (691)
T ss_pred ccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCccc-ceeeeeecceEEeccee
Confidence 999999999888888899999888877776554 45555555555422 111 1245555 77655444477777 88
Q ss_pred CcEEE
Q 046773 444 TNIHL 448 (453)
Q Consensus 444 ~~Ikl 448 (453)
.++.+
T Consensus 311 ~~l~i 315 (691)
T KOG2048|consen 311 FTLAI 315 (691)
T ss_pred eEEEE
Confidence 77654
No 132
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=5.5e-14 Score=135.53 Aligned_cols=227 Identities=16% Similarity=0.172 Sum_probs=153.8
Q ss_pred ceEEEEEEc--CCeEEEEeCCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCC
Q 046773 193 RAVSGIIIT--DSQLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAE 270 (453)
Q Consensus 193 ~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg 270 (453)
..|+.+.|+ ...|+.+|.|++++++++...-....-.|.+.+. ..+|.++.+ .++|+.|+.||+.|+.++
T Consensus 14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL----~c~F~d~~~----~~~G~~dg~vr~~Dln~~ 85 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLL----DCAFADEST----IVTGGLDGQVRRYDLNTG 85 (323)
T ss_pred hceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCcee----eeeccCCce----EEEeccCceEEEEEecCC
Confidence 367888887 3346666899999999987621111111333322 257888654 679999999999999999
Q ss_pred cEEecccccCCcceeeeeeeeeeccceeEEEEcC--CceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCE
Q 046773 271 EVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTS--HESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEA 348 (453)
Q Consensus 271 ~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~--~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~ 348 (453)
+... +-.|..++.+|.+.+ +.++++|.|.+||+||.++..+..+. .....|.+++..++.
T Consensus 86 ~~~~---------------igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~---d~~kkVy~~~v~g~~ 147 (323)
T KOG1036|consen 86 NEDQ---------------IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTF---DQGKKVYCMDVSGNR 147 (323)
T ss_pred ccee---------------eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccc---ccCceEEEEeccCCE
Confidence 8432 335778888888873 34667788999999999974433332 122378999999999
Q ss_pred EEEEeCCCccccCcceEEEEEcCCCeeEEEEEecC--CCeeEEEEeeCC-CeEEEEeCCeEEEEECCCC----eEEEEec
Q 046773 349 YIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRA--DRNVNVMGCMNQ-GYALMCVEGVIRVWEVEGG----EYMYSFR 421 (453)
Q Consensus 349 l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~--~~v~~~~~~~~~-~~lls~s~~tIrlWD~~tG----~~l~tL~ 421 (453)
|++|..+. .+.+||+.+-....+...++ -.+|.+...|++ +|.+++-+|.|-+=.+..- +.-+.|+
T Consensus 148 LvVg~~~r-------~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFk 220 (323)
T KOG1036|consen 148 LVVGTSDR-------KVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFK 220 (323)
T ss_pred EEEeecCc-------eEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEE
Confidence 99999988 89999987632211111111 115666666643 5555444577766666554 3356677
Q ss_pred ccCC--------ceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 422 ERIG--------EEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 422 gh~~--------~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
-|.. ++|+ +|+|--.++||| +||.|.+||+.
T Consensus 221 CHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~ 262 (323)
T KOG1036|consen 221 CHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLF 262 (323)
T ss_pred eeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCc
Confidence 6631 2477 566777789999 99999999985
No 133
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.62 E-value=8.5e-15 Score=153.25 Aligned_cols=234 Identities=17% Similarity=0.145 Sum_probs=179.1
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc-----CCeEEEEeCCCCEEEEEe
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT-----DSQLIFATLDGDIHVAVI 219 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~-----g~~LasgS~D~tIkvWd~ 219 (453)
+.|++.|| .+||+|-.-|++||+|+..-+.+.++..|.. .|-++.|+ ...|||||.|+-|+|+|+
T Consensus 462 ~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHes--------EilcLeyS~p~~~~kLLASasrdRlIHV~Dv 533 (1080)
T KOG1408|consen 462 FRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHES--------EILCLEYSFPVLTNKLLASASRDRLIHVYDV 533 (1080)
T ss_pred eEEEEECCCcceecccCccCceEEEEehhhhhhhheecccc--------eeEEEeecCchhhhHhhhhccCCceEEEEec
Confidence 66777765 6999999999999999999998888888765 46777776 347999999999999998
Q ss_pred ecC-C-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCC----CcEEecccccCCcceeeeeeeeee
Q 046773 220 DDV-A-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQA----EEVFVGGDLTDHNTVMGWRMLTEF 293 (453)
Q Consensus 220 ~~~-g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~t----g~~~~g~~l~~~~~v~~w~~l~~h 293 (453)
... - .+++-+|...|. .|-|...|-- .-+.|++.|+.|.. ++.. |.+|..|+ +++ ++
T Consensus 534 ~rny~l~qtld~HSssIT----svKFa~~gln-~~MiscGADksimF-r~~qk~~~g~~f~r~t----------~t~-~k 596 (1080)
T KOG1408|consen 534 KRNYDLVQTLDGHSSSIT----SVKFACNGLN-RKMISCGADKSIMF-RVNQKASSGRLFPRHT----------QTL-SK 596 (1080)
T ss_pred ccccchhhhhccccccee----EEEEeecCCc-eEEEeccCchhhhe-ehhccccCceeccccc----------ccc-cc
Confidence 651 2 577778877664 4788877611 12678899998743 3332 44554322 122 12
Q ss_pred ccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEEee-ccC--CeEEEEEEecCCEEEEEeCCCccccCcceEEEE
Q 046773 294 TEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGERG-YGR--GLYVTSVDVNAEAYIVVENRELENQNRRLAIVR 368 (453)
Q Consensus 294 ~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~g-~~~--~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw 368 (453)
.....+.++|.. ++.+|-|..|||+|+++++..+.++| |.+ ...-..++|+|.++++...|. ++.+.
T Consensus 597 -tTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdk-------tl~~~ 668 (1080)
T KOG1408|consen 597 -TTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDK-------TLCFV 668 (1080)
T ss_pred -ceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCC-------ceEEE
Confidence 234566777654 56778899999999999988777633 333 333356789999999888888 99999
Q ss_pred EcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCC
Q 046773 369 RVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEG 413 (453)
Q Consensus 369 ~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~t 413 (453)
|.-+|+|+.++.+|...|..+-|.+|-+++++.++ +-|-||.+..
T Consensus 669 Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 669 DFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 99999999999999999999999999999999887 9999998864
No 134
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.62 E-value=2.9e-12 Score=126.17 Aligned_cols=268 Identities=19% Similarity=0.306 Sum_probs=181.3
Q ss_pred CCCCCCCeEEEEEEecC--CEEEEEeC-CCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CC-eEEEEeCC
Q 046773 138 DVDNPDGLTCRCLTLSD--LYLACGFA-DGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DS-QLIFATLD 211 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~~LaSGS~-D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~-~LasgS~D 211 (453)
+|. +. |.+++|++ ..+++++. |+++++|++.+++.+.++.+|.. .|.++++. +. .+++++.|
T Consensus 153 ~~~--~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~~~~~~~d 220 (466)
T COG2319 153 GHS--ES--VTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTD--------PVSSLAFSPDGGLLIASGSSD 220 (466)
T ss_pred cCc--cc--EEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCC--------ceEEEEEcCCcceEEEEecCC
Confidence 665 33 67888876 47888885 99999999999999999988654 46667665 44 45555999
Q ss_pred CCEEEEEeecCC--cc-eEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcE-EecccccCCcceeee
Q 046773 212 GDIHVAVIDDVA--NE-TRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEV-FVGGDLTDHNTVMGW 287 (453)
Q Consensus 212 ~tIkvWd~~~~g--~~-~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~-~~g~~l~~~~~v~~w 287 (453)
++|++||... + +. .+..|... ....|+|++.. +++++.|+++++||+..... +
T Consensus 221 ~~i~~wd~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~~~~-------------- 277 (466)
T COG2319 221 GTIRLWDLST-GKLLRSTLSGHSDS-----VVSSFSPDGSL---LASGSSDGTIRLWDLRSSSSLL-------------- 277 (466)
T ss_pred CcEEEEECCC-CcEEeeecCCCCcc-----eeEeECCCCCE---EEEecCCCcEEEeeecCCCcEE--------------
Confidence 9999998764 4 22 23334322 11279999854 66899999999999987652 2
Q ss_pred eeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEEe--eccCCeEEEEEEecC--CEEEEE-eCCCcccc
Q 046773 288 RMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGER--GYGRGLYVTSVDVNA--EAYIVV-ENRELENQ 360 (453)
Q Consensus 288 ~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~--g~~~~~~v~~~~~~g--~~l~s~-s~dg~~~~ 360 (453)
..+.+|...+.++.++|+. .++++.|+++++||+.+........ .|.. .+..+.+.. ..++.+ ..++
T Consensus 278 ~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~---- 351 (466)
T COG2319 278 RTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG--PVSSLSFSPDGSLLVSGGSDDG---- 351 (466)
T ss_pred EEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCC--ceEEEEECCCCCEEEEeecCCC----
Confidence 1124677899999999843 3444556779999999876554443 4443 334444322 345444 4555
Q ss_pred CcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEE-EeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCC
Q 046773 361 NRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALM-CVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDR 436 (453)
Q Consensus 361 ~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls-~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~ 436 (453)
.+.+|+.............. .+..+.+.+ ...... +.. +.+++||.....+...+..+... +. .+.+++.
T Consensus 352 ---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 425 (466)
T COG2319 352 ---TIRLWDLRTGKPLKTLEGHS-NVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSR-VTSLDFSPDGK 425 (466)
T ss_pred ---cEEeeecCCCceeEEecCCc-eEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCc-EEEEEECCCCc
Confidence 88889988776222222111 145566666 433333 344 99999999999888877655333 44 5678898
Q ss_pred EEEEE-eCCcEEEEecC
Q 046773 437 HVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 437 ~lasg-~D~~IklWDl~ 452 (453)
.++++ .++++++|++.
T Consensus 426 ~~~~~~~~~~~~~~~~~ 442 (466)
T COG2319 426 SLASGSSDNTIRLWDLK 442 (466)
T ss_pred EEEEecCCCcEEEEecc
Confidence 99887 99999999864
No 135
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.61 E-value=6.8e-15 Score=155.40 Aligned_cols=221 Identities=14% Similarity=0.135 Sum_probs=146.0
Q ss_pred EEcCCeEEEEeCCCCEEEEEeecCC----cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEe
Q 046773 199 IITDSQLIFATLDGDIHVAVIDDVA----NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFV 274 (453)
Q Consensus 199 ~f~g~~LasgS~D~tIkvWd~~~~g----~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~ 274 (453)
+++...||+++.-+.|-+||++..+ +..+..|.-.+. .|+|++---. .|.|||-|++||+||++...-.
T Consensus 97 ~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~----~ldfh~tep~--iliSGSQDg~vK~~DlR~~~S~- 169 (839)
T KOG0269|consen 97 QLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSAN----KLDFHSTEPN--ILISGSQDGTVKCWDLRSKKSK- 169 (839)
T ss_pred cchhhhheeecCCCcEEEEecCccccchhhhHhhhhcccee----eeeeccCCcc--EEEecCCCceEEEEeeeccccc-
Confidence 4567889999999999999998633 223444543332 4777776543 5899999999999999987611
Q ss_pred cccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEE-cCCcEEEEECCCC-ceEEEEeeccCCeEEEEEEecCCEEE
Q 046773 275 GGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVAC-TSSRVITFDLRNQ-GMVLGERGYGRGLYVTSVDVNAEAYI 350 (453)
Q Consensus 275 g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas-~d~tIrlWDl~t~-~~~~~~~g~~~~~~v~~~~~~g~~l~ 350 (453)
.+.++-++.|..|+|+|.. .+++. +.|.+++|||+.. +|.+.+..|..-+++...+|+++.||
T Consensus 170 -------------~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lA 236 (839)
T KOG0269|consen 170 -------------STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLA 236 (839)
T ss_pred -------------ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceee
Confidence 1223456778889998643 45554 4589999999875 34444566655555555668788899
Q ss_pred EEeCCCccccCcceEEEEEcCCCeeEEEEEecC-CCeeEEEEeeCCCeEE-EEeC---CeEEEEECCCC-eEEEEecccC
Q 046773 351 VVENRELENQNRRLAIVRRVDTFEEVCRFSLRA-DRNVNVMGCMNQGYAL-MCVE---GVIRVWEVEGG-EYMYSFRERI 424 (453)
Q Consensus 351 s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~-~~v~~~~~~~~~~~ll-s~s~---~tIrlWD~~tG-~~l~tL~gh~ 424 (453)
+++.|+ +||||++.+++.-...+.+. .-+..+.+=|.-.+.+ +|+. ..|+|||++-- -.-.+|..|+
T Consensus 237 TGGRDK-------~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~ 309 (839)
T KOG0269|consen 237 TGGRDK-------MVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHT 309 (839)
T ss_pred ecCCCc-------cEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccC
Confidence 999999 99999998754222111111 1133444555444444 4543 79999999864 3346788898
Q ss_pred CceEEEEe---cCCCEEEEE-eCCcEE
Q 046773 425 GEEVIAFV---GDDRHVAAS-CGTNIH 447 (453)
Q Consensus 425 ~~~V~a~s---~d~~~lasg-~D~~Ik 447 (453)
+. |..+. .|...+-+. .|++|.
T Consensus 310 ~~-vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 310 DS-VTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred cc-ccceeccCCCceeeEeecCccHHH
Confidence 87 76332 233445566 787763
No 136
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.60 E-value=2e-13 Score=142.91 Aligned_cols=110 Identities=7% Similarity=0.120 Sum_probs=82.1
Q ss_pred EEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeE--
Q 046773 340 TSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEY-- 416 (453)
Q Consensus 340 ~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~-- 416 (453)
.+.+++++.++++..+. ...-..|+||+..+=..++.+.+|.-.|..+.|+||+++|++++- +|+.||....+..
T Consensus 531 l~~s~~gnliASaCKS~--~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e 608 (764)
T KOG1063|consen 531 LAISPTGNLIASACKSS--LKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDE 608 (764)
T ss_pred EEecCCCCEEeehhhhC--CccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchh
Confidence 33455577777664443 222236788877765667778889888999999999999998886 9999998865322
Q ss_pred --EEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 417 --MYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 417 --l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
...++.|+.- || +++||++++|++ -|++|++|...
T Consensus 609 ~~fa~~k~HtRI-IWdcsW~pde~~FaTaSRDK~VkVW~~~ 648 (764)
T KOG1063|consen 609 FRFACLKAHTRI-IWDCSWSPDEKYFATASRDKKVKVWEEP 648 (764)
T ss_pred hhhccccccceE-EEEcccCcccceeEEecCCceEEEEecc
Confidence 2235678777 89 567999999999 99999999764
No 137
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.59 E-value=1.3e-13 Score=138.75 Aligned_cols=268 Identities=18% Similarity=0.200 Sum_probs=178.2
Q ss_pred EEEEEecC----CEEEEEeCCCcEEEEECCCCeE----EEEecCCCCCccccccceEEEEEEcC---CeEEEEeCCCCEE
Q 046773 147 CRCLTLSD----LYLACGFADGAVRLFDLTTRLH----VRTFRPQHSDRLGQFSRAVSGIIITD---SQLIFATLDGDIH 215 (453)
Q Consensus 147 v~~lafs~----~~LaSGS~D~TIrlWD~~tg~~----~~tl~gh~~~~~~~~s~~V~~i~f~g---~~LasgS~D~tIk 215 (453)
|.|++|-| +++|+|.--|+|-+||+.+.+. +.-+.+| +..|++|.|++ .++++.|.||||+
T Consensus 189 it~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~h--------s~~Vs~l~F~P~n~s~i~ssSyDGtiR 260 (498)
T KOG4328|consen 189 ITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPH--------SGPVSGLKFSPANTSQIYSSSYDGTIR 260 (498)
T ss_pred eEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccC--------CccccceEecCCChhheeeeccCceee
Confidence 78999976 4799999999999999964432 3334443 34788898874 5899999999999
Q ss_pred EEEeecCCc--ceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc-EEecccccCCcceeeeeeeee
Q 046773 216 VAVIDDVAN--ETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE-VFVGGDLTDHNTVMGWRMLTE 292 (453)
Q Consensus 216 vWd~~~~g~--~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~-~~~g~~l~~~~~v~~w~~l~~ 292 (453)
+=|++. ++ ..+..-...... ...+|+.+.+. .|+..-.+ ...+||.+++. .+. .++-
T Consensus 261 ~~D~~~-~i~e~v~s~~~d~~~f--s~~d~~~e~~~--vl~~~~~G-~f~~iD~R~~~s~~~--------------~~~l 320 (498)
T KOG4328|consen 261 LQDFEG-NISEEVLSLDTDNIWF--SSLDFSAESRS--VLFGDNVG-NFNVIDLRTDGSEYE--------------NLRL 320 (498)
T ss_pred eeeecc-hhhHHHhhcCccceee--eeccccCCCcc--EEEeeccc-ceEEEEeecCCccch--------------hhhh
Confidence 999886 31 111111111100 12566666654 34444455 88999999866 221 2345
Q ss_pred eccceeEEEEcCC---ceEEEEcCCcEEEEECCCCc--e--EEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceE
Q 046773 293 FTEFVGRVRVTSH---ESAVACTSSRVITFDLRNQG--M--VLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLA 365 (453)
Q Consensus 293 h~~~v~~v~~s~~---~~~vas~d~tIrlWDl~t~~--~--~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i 365 (453)
|.-.|++|+++|- .++.+|.|+|.||||++.-+ . ++....|.+.+...+|+|++..+++-+.|. .|
T Consensus 321 h~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~-------~I 393 (498)
T KOG4328|consen 321 HKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDN-------EI 393 (498)
T ss_pred hhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCC-------ce
Confidence 6668999999863 46777889999999998632 1 122245666666667999988899988888 99
Q ss_pred EEEEcC----CCeeEEEEEecCC----C--eeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCC---ceEEEE
Q 046773 366 IVRRVD----TFEEVCRFSLRAD----R--NVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIG---EEVIAF 431 (453)
Q Consensus 366 ~Iw~~~----tg~~v~~l~~~~~----~--v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~---~~V~a~ 431 (453)
||||.. .-++.+++. |.+ | ....++.|+..+++++.- .-|-|.|-+.|+.+..|-+... ..|+++
T Consensus 394 Rv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~ 472 (498)
T KOG4328|consen 394 RVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEF 472 (498)
T ss_pred EEeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceee
Confidence 999983 233344442 221 1 122456666555555554 8899999999997777644432 125688
Q ss_pred ecCCCEEEEE--eCCcEEEEe
Q 046773 432 VGDDRHVAAS--CGTNIHLWD 450 (453)
Q Consensus 432 s~d~~~lasg--~D~~IklWD 450 (453)
.|-+..+++| +-|.|.||-
T Consensus 473 HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 473 HPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred cccccceeccCCccceEEEEe
Confidence 8977755555 788888884
No 138
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.59 E-value=1.5e-14 Score=140.45 Aligned_cols=235 Identities=12% Similarity=0.153 Sum_probs=158.3
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc---CCeEEEEeCCCCEEEEEeecCC--cceEE-
Q 046773 155 LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT---DSQLIFATLDGDIHVAVIDDVA--NETRT- 228 (453)
Q Consensus 155 ~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~---g~~LasgS~D~tIkvWd~~~~g--~~~~~- 228 (453)
.+||.|++=|-|||-|+.+++|...++||.. +|..|.|. ++.|++||.|.+||+||+++ . +..+-
T Consensus 106 p~la~~G~~GvIrVid~~~~~~~~~~~ghG~--------sINeik~~p~~~qlvls~SkD~svRlwnI~~-~~Cv~VfGG 176 (385)
T KOG1034|consen 106 PFLAAGGYLGVIRVIDVVSGQCSKNYRGHGG--------SINEIKFHPDRPQLVLSASKDHSVRLWNIQT-DVCVAVFGG 176 (385)
T ss_pred eeEEeecceeEEEEEecchhhhccceeccCc--------cchhhhcCCCCCcEEEEecCCceEEEEeccC-CeEEEEecc
Confidence 4899999999999999999999999999753 67778775 45799999999999999988 3 33333
Q ss_pred --eeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc---EEec--------cc--ccCCcc-eeeeeeeee
Q 046773 229 --AHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE---VFVG--------GD--LTDHNT-VMGWRMLTE 292 (453)
Q Consensus 229 --~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~---~~~g--------~~--l~~~~~-v~~w~~l~~ 292 (453)
+|.+.|. +|+|+++|++ ++|+++|+++++|++.+.+ .+.- -+ .+.+.. +-..-+-.-
T Consensus 177 ~egHrdeVL----SvD~~~~gd~---i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~di 249 (385)
T KOG1034|consen 177 VEGHRDEVL----SVDFSLDGDR---IASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDI 249 (385)
T ss_pred cccccCcEE----EEEEcCCCCe---eeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccccc
Confidence 3555443 5999999997 8899999999999999765 1100 00 000000 000012346
Q ss_pred eccceeEEEEcCCceEEEEcCCcEEEEEC-CCCceE------------EE-EeeccCCeEE--EEEEecCCEEEEEeCCC
Q 046773 293 FTEFVGRVRVTSHESAVACTSSRVITFDL-RNQGMV------------LG-ERGYGRGLYV--TSVDVNAEAYIVVENRE 356 (453)
Q Consensus 293 h~~~v~~v~~s~~~~~vas~d~tIrlWDl-~t~~~~------------~~-~~g~~~~~~v--~~~~~~g~~l~s~s~dg 356 (453)
|+++|-||+|-++-+++=|.++.|..|-. +-.+.+ +. ..-..-.+.- .+|++-.+.||.+...|
T Consensus 250 HrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g 329 (385)
T KOG1034|consen 250 HRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSG 329 (385)
T ss_pred ccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCC
Confidence 78899999988865555577789999987 211111 11 1111111111 23455567888888888
Q ss_pred ccccCcceEEEEEcCCCee--EEEEEec--CCCeeEEEEeeCCCeEEEEeC-CeEEEEECC
Q 046773 357 LENQNRRLAIVRRVDTFEE--VCRFSLR--ADRNVNVMGCMNQGYALMCVE-GVIRVWEVE 412 (453)
Q Consensus 357 ~~~~~~~~i~Iw~~~tg~~--v~~l~~~--~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~ 412 (453)
.+-+||++.-++ ..++.-+ ...||...|+-++..++.+.+ ++|--||..
T Consensus 330 -------~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 330 -------KVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred -------cEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 999999987544 2222222 233777788888888877666 888888854
No 139
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.59 E-value=3e-12 Score=128.93 Aligned_cols=260 Identities=12% Similarity=0.142 Sum_probs=156.6
Q ss_pred EEEEeCCCcEEEEECCC-Ce--EEEEecCCCCCccccccceEEEEEE--cCCeEEEEe-CCCCEEEEEeecCC-cceEEe
Q 046773 157 LACGFADGAVRLFDLTT-RL--HVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFAT-LDGDIHVAVIDDVA-NETRTA 229 (453)
Q Consensus 157 LaSGS~D~TIrlWD~~t-g~--~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS-~D~tIkvWd~~~~g-~~~~~~ 229 (453)
.++.++|++|++||+.+ |+ +++++... . ....+++ +++.|+.++ .++.|.+|+++..| +.....
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~-~--------~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~ 75 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDVP-G--------QVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAE 75 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEecC-C--------CCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeee
Confidence 45567899999999974 43 55666421 1 1122444 577776554 57889999987424 222221
Q ss_pred eecceecCceEEEEeCCCceeeEEEEee-CCCeEEEeeCCC-CcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc-
Q 046773 230 HFGSVMDDGVLIDFTGCSRYWVGLYAGL-AGRAFHIWDRQA-EEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE- 306 (453)
Q Consensus 230 ~~~~v~~~~~~v~Fs~dg~~~~~LaSgS-~D~tIrvWD~~t-g~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~- 306 (453)
.. .......|+|+|+|++ |++++ .++.|.+||+++ |.... .+ ..+.+. .....++|+|++
T Consensus 76 ~~--~~~~p~~i~~~~~g~~---l~v~~~~~~~v~v~~~~~~g~~~~--------~~---~~~~~~-~~~~~~~~~p~g~ 138 (330)
T PRK11028 76 SP--LPGSPTHISTDHQGRF---LFSASYNANCVSVSPLDKDGIPVA--------PI---QIIEGL-EGCHSANIDPDNR 138 (330)
T ss_pred ec--CCCCceEEEECCCCCE---EEEEEcCCCeEEEEEECCCCCCCC--------ce---eeccCC-CcccEeEeCCCCC
Confidence 11 1112235899999997 45544 588999999974 32110 00 111111 224557788875
Q ss_pred -eEEEEc-CCcEEEEECCCCceEEE-------E-eeccCCeEEEEEEecCCEEEEEeC-CCccccCcceEEEEEcCC--C
Q 046773 307 -SAVACT-SSRVITFDLRNQGMVLG-------E-RGYGRGLYVTSVDVNAEAYIVVEN-RELENQNRRLAIVRRVDT--F 373 (453)
Q Consensus 307 -~~vas~-d~tIrlWDl~t~~~~~~-------~-~g~~~~~~v~~~~~~g~~l~s~s~-dg~~~~~~~~i~Iw~~~t--g 373 (453)
+++++. +++|++||+++.+.+.. . .+. ...-..|+++++.+++++. ++ ++.+|+++. +
T Consensus 139 ~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~--~p~~~~~~pdg~~lyv~~~~~~-------~v~v~~~~~~~~ 209 (330)
T PRK11028 139 TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGA--GPRHMVFHPNQQYAYCVNELNS-------SVDVWQLKDPHG 209 (330)
T ss_pred EEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCC--CCceEEECCCCCEEEEEecCCC-------EEEEEEEeCCCC
Confidence 334444 47899999987443321 1 121 1122467888888877654 55 999999973 3
Q ss_pred --eeEEEEEecCC------CeeEEEEeeCCCeEEEEeC--CeEEEEECCCCeEEEEecccCC----ceEEEEecCCCEEE
Q 046773 374 --EEVCRFSLRAD------RNVNVMGCMNQGYALMCVE--GVIRVWEVEGGEYMYSFRERIG----EEVIAFVGDDRHVA 439 (453)
Q Consensus 374 --~~v~~l~~~~~------~v~~~~~~~~~~~lls~s~--~tIrlWD~~tG~~l~tL~gh~~----~~V~a~s~d~~~la 439 (453)
+.++++...|. +...+.++|+++++.++.. ++|.+||+.+.....++.++.. ..-.+|+|||++|+
T Consensus 210 ~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~ 289 (330)
T PRK11028 210 EIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLI 289 (330)
T ss_pred CEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEE
Confidence 33444433322 2234778899998887643 8999999965432223333311 11127889999987
Q ss_pred EE--eCCcEEEEec
Q 046773 440 AS--CGTNIHLWDF 451 (453)
Q Consensus 440 sg--~D~~IklWDl 451 (453)
++ .+++|.||++
T Consensus 290 va~~~~~~v~v~~~ 303 (330)
T PRK11028 290 AAGQKSHHISVYEI 303 (330)
T ss_pred EEEccCCcEEEEEE
Confidence 66 5899999976
No 140
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.58 E-value=2.7e-13 Score=142.05 Aligned_cols=273 Identities=12% Similarity=0.139 Sum_probs=178.5
Q ss_pred CCCCCCCCeEEEEEEecC-----CEEEEEeCCCcEEEEECCCC--eEEEEecCCCCCccccccceEEEEEEcCC-eEEEE
Q 046773 137 SDVDNPDGLTCRCLTLSD-----LYLACGFADGAVRLFDLTTR--LHVRTFRPQHSDRLGQFSRAVSGIIITDS-QLIFA 208 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~-----~~LaSGS~D~TIrlWD~~tg--~~~~tl~gh~~~~~~~~s~~V~~i~f~g~-~Lasg 208 (453)
.||.++ |+|+++=+ .+|+||+.|++|++|.++.- .|+.++.+|.. .++++... .+.++
T Consensus 51 ~GH~a~----VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~----------~~~cv~a~~~~~~~ 116 (764)
T KOG1063|consen 51 DGHVAR----VNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCK----------ECVCVVARSSVMTC 116 (764)
T ss_pred cCCccc----eEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcce----------eEEEEEeeeeEEEe
Confidence 499976 89998853 27999999999999999832 47888887543 23444432 33333
Q ss_pred -eCCCCEEEEEeecCC---cceEEeeecceecCceEEEEeCC-CceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcc
Q 046773 209 -TLDGDIHVAVIDDVA---NETRTAHFGSVMDDGVLIDFTGC-SRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNT 283 (453)
Q Consensus 209 -S~D~tIkvWd~~~~g---~~~~~~~~~~v~~~~~~v~Fs~d-g~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~ 283 (453)
+.|+++.+||.+... .+.++.-.+.+.. ..+++.|+ +.+ .||-|+.+..|.|.--.+.+ |
T Consensus 117 ~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ip--LcL~~~~~~~~~--lla~Ggs~~~v~~~s~~~d~-f---------- 181 (764)
T KOG1063|consen 117 KAADGTVSVWDKQQDEVFLLAVLRFEIKEAIP--LCLAALKNNKTF--LLACGGSKFVVDLYSSSADS-F---------- 181 (764)
T ss_pred eccCceEEEeecCCCceeeehheehhhhhHhh--HHHhhhccCCcE--EEEecCcceEEEEeccCCcc-e----------
Confidence 689999999995411 1222222221111 12456663 343 58889999888887655443 1
Q ss_pred eeeeeeeeeeccceeEEEEc---CCceEEEEc--CCcEEEEECCCCc--------------------eEE----------
Q 046773 284 VMGWRMLTEFTEFVGRVRVT---SHESAVACT--SSRVITFDLRNQG--------------------MVL---------- 328 (453)
Q Consensus 284 v~~w~~l~~h~~~v~~v~~s---~~~~~vas~--d~tIrlWDl~t~~--------------------~~~---------- 328 (453)
..|..|.||+++|.+++|. .+.++++|+ |..||||.+.-+. .+.
T Consensus 182 -~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~e 260 (764)
T KOG1063|consen 182 -ARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFE 260 (764)
T ss_pred -eEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehh
Confidence 1245688999999999986 334555543 5789999875433 111
Q ss_pred EE-eeccCCeEEEEE--EecCCEEEEEeCCCccccCcceEEEEEcCC--Ce-----eEEEEEecCCCeeEEEEeeCCCeE
Q 046773 329 GE-RGYGRGLYVTSV--DVNAEAYIVVENRELENQNRRLAIVRRVDT--FE-----EVCRFSLRADRNVNVMGCMNQGYA 398 (453)
Q Consensus 329 ~~-~g~~~~~~v~~~--~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~t--g~-----~v~~l~~~~~~v~~~~~~~~~~~l 398 (453)
++ .||. ..|.++ .|.+..|+++|+|. ++-||.-++ |- ++..+.++..+-....+++++..+
T Consensus 261 all~GHe--DWV~sv~W~p~~~~LLSASaDk-------smiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~i 331 (764)
T KOG1063|consen 261 ALLMGHE--DWVYSVWWHPEGLDLLSASADK-------SMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVI 331 (764)
T ss_pred hhhcCcc--cceEEEEEccchhhheecccCc-------ceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEE
Confidence 11 2554 455665 45566789999999 999997654 42 222233233345667778888766
Q ss_pred EEEeC-CeEEEEECCC-CeEE--EEecccCCceEE--EEecCCCEEEEE-eCCcEEEE
Q 046773 399 LMCVE-GVIRVWEVEG-GEYM--YSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLW 449 (453)
Q Consensus 399 ls~s~-~tIrlWD~~t-G~~l--~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklW 449 (453)
++-+- |-.++|-.+. +.+. -.+.||.+. |. +..|.|.+|.|. .|.|-||+
T Consensus 332 i~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~-V~dv~W~psGeflLsvs~DQTTRlF 388 (764)
T KOG1063|consen 332 IAHGRTGGFHLWKTKDKTFWTQEPVISGHVDG-VKDVDWDPSGEFLLSVSLDQTTRLF 388 (764)
T ss_pred EEecccCcEEEEeccCccceeecccccccccc-ceeeeecCCCCEEEEeccccceeee
Confidence 65554 9999998443 3333 345799999 88 557999999888 99999985
No 141
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.58 E-value=2.3e-14 Score=151.51 Aligned_cols=206 Identities=14% Similarity=0.088 Sum_probs=143.5
Q ss_pred EecCCEEEEEeCCCcEEEEECCC---CeEEEEecCCCCCccccccceEEEEEEc---CCeEEEEeCCCCEEEEEeecCC-
Q 046773 151 TLSDLYLACGFADGAVRLFDLTT---RLHVRTFRPQHSDRLGQFSRAVSGIIIT---DSQLIFATLDGDIHVAVIDDVA- 223 (453)
Q Consensus 151 afs~~~LaSGS~D~TIrlWD~~t---g~~~~tl~gh~~~~~~~~s~~V~~i~f~---g~~LasgS~D~tIkvWd~~~~g- 223 (453)
+|..++|||++..+-|-+||+.- .+.+..|..|. ++|..+.|+ +.+|+|||.|++||.||+...-
T Consensus 97 ~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~--------Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 97 QLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHE--------RSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred cchhhhheeecCCCcEEEEecCccccchhhhHhhhhc--------cceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 67778999999999999999987 45566777664 477888876 6799999999999999997622
Q ss_pred cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEc
Q 046773 224 NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVT 303 (453)
Q Consensus 224 ~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s 303 (453)
..++++-...+. -|.|+|--.. ..+++...+.+++||++.-.... .++..|.++|.++-++
T Consensus 169 ~~t~~~nSESiR----DV~fsp~~~~--~F~s~~dsG~lqlWDlRqp~r~~-------------~k~~AH~GpV~c~nwh 229 (839)
T KOG0269|consen 169 KSTFRSNSESIR----DVKFSPGYGN--KFASIHDSGYLQLWDLRQPDRCE-------------KKLTAHNGPVLCLNWH 229 (839)
T ss_pred cccccccchhhh----ceeeccCCCc--eEEEecCCceEEEeeccCchhHH-------------HHhhcccCceEEEeec
Confidence 455554333322 2889987543 47888999999999998755211 3578999999999999
Q ss_pred CCceEEEE--cCCcEEEEECCCCce--EEEEeeccCCeEEEEEEecCC---EEEEEeCCCccccCcceEEEEEcCCC-ee
Q 046773 304 SHESAVAC--TSSRVITFDLRNQGM--VLGERGYGRGLYVTSVDVNAE---AYIVVENRELENQNRRLAIVRRVDTF-EE 375 (453)
Q Consensus 304 ~~~~~vas--~d~tIrlWDl~t~~~--~~~~~g~~~~~~v~~~~~~g~---~l~s~s~dg~~~~~~~~i~Iw~~~tg-~~ 375 (453)
|+...+|+ -|++|||||+.+++. +++. ++ ...|..+-+.+. .|++.|.-. |..|+|||+.-+ -+
T Consensus 230 Pnr~~lATGGRDK~vkiWd~t~~~~~~~~tI--nT-iapv~rVkWRP~~~~hLAtcsmv~-----dtsV~VWDvrRPYIP 301 (839)
T KOG0269|consen 230 PNREWLATGGRDKMVKIWDMTDSRAKPKHTI--NT-IAPVGRVKWRPARSYHLATCSMVV-----DTSVHVWDVRRPYIP 301 (839)
T ss_pred CCCceeeecCCCccEEEEeccCCCccceeEE--ee-cceeeeeeeccCccchhhhhhccc-----cceEEEEeecccccc
Confidence 98866664 478999999997532 2222 11 123455554443 456655544 448999998753 34
Q ss_pred EEEEEecCCCeeEEEE
Q 046773 376 VCRFSLRADRNVNVMG 391 (453)
Q Consensus 376 v~~l~~~~~~v~~~~~ 391 (453)
-.++.-|.+-+..+++
T Consensus 302 ~~t~~eH~~~vt~i~W 317 (839)
T KOG0269|consen 302 YATFLEHTDSVTGIAW 317 (839)
T ss_pred ceeeeccCccccceec
Confidence 4555556554444443
No 142
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=1.2e-14 Score=149.35 Aligned_cols=236 Identities=16% Similarity=0.188 Sum_probs=158.0
Q ss_pred eEEEEEEcC--CeEEEEeCCCCEEEEEeec---C--C----cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeE
Q 046773 194 AVSGIIITD--SQLIFATLDGDIHVAVIDD---V--A----NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAF 262 (453)
Q Consensus 194 ~V~~i~f~g--~~LasgS~D~tIkvWd~~~---~--g----~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tI 262 (453)
.+++++|.+ .-|++||-|++|++|+++. . . +-++++|.+.|. .|...+.++. ++||+.|++|
T Consensus 296 ~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl----~v~v~~n~~~---~ysgg~Dg~I 368 (577)
T KOG0642|consen 296 CIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVL----CVVVPSNGEH---CYSGGIDGTI 368 (577)
T ss_pred hhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceE----EEEecCCceE---EEeeccCcee
Confidence 455666653 4699999999999999932 1 1 467788988875 4788889886 7899999999
Q ss_pred EEeeCCCCc-EEecccccCCcceeeeeeeeeeccceeEEEEcC--CceEEEEcCCcEEEEECCCCce-EEEE-eeccCCe
Q 046773 263 HIWDRQAEE-VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTS--HESAVACTSSRVITFDLRNQGM-VLGE-RGYGRGL 337 (453)
Q Consensus 263 rvWD~~tg~-~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~--~~~~vas~d~tIrlWDl~t~~~-~~~~-~g~~~~~ 337 (453)
|.|++.... -+..+ ++... -.++.||++.|..+++++ +.+++.|.|+|+|+|+...... .... ..++
T Consensus 369 ~~w~~p~n~dp~ds~---dp~vl--~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g--- 440 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSY---DPSVL--SGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHG--- 440 (577)
T ss_pred eeeccCCCCCccccc---Ccchh--ccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccC---
Confidence 999876332 11110 11111 246889999999999985 4456667799999999876432 1211 1121
Q ss_pred EEEEEEecCCEEEEEeCCCccccCcceEE---EEEcCCCeeEEEEEecC-------CCeeEEEEeeCCCeEEEEeC-CeE
Q 046773 338 YVTSVDVNAEAYIVVENRELENQNRRLAI---VRRVDTFEEVCRFSLRA-------DRNVNVMGCMNQGYALMCVE-GVI 406 (453)
Q Consensus 338 ~v~~~~~~g~~l~s~s~dg~~~~~~~~i~---Iw~~~tg~~v~~l~~~~-------~~v~~~~~~~~~~~lls~s~-~tI 406 (453)
+-.+|++.....+....+. ..+ +.+.++.+.+..+.... ..+..++.++.....+++-. ++|
T Consensus 441 ~Plsvd~~ss~~a~~~~s~-------~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~I 513 (577)
T KOG0642|consen 441 YPLSVDRTSSRPAHSLASF-------RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSI 513 (577)
T ss_pred CcceEeeccchhHhhhhhc-------ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCce
Confidence 2356665554432222222 222 22333443333332221 22334566666666565555 999
Q ss_pred EEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 407 RVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 407 rlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
|+.|..+|+.++....|... |. ++.|+|.+|.++ .|+.|++|.+.
T Consensus 514 r~~dn~~~~~l~s~~a~~~s-vtslai~~ng~~l~s~s~d~sv~l~kld 561 (577)
T KOG0642|consen 514 RFFDNKTGKILHSMVAHKDS-VTSLAIDPNGPYLMSGSHDGSVRLWKLD 561 (577)
T ss_pred ecccccccccchheeeccce-ecceeecCCCceEEeecCCceeehhhcc
Confidence 99999999999999999888 87 677999999999 99999999874
No 143
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=2.1e-13 Score=137.35 Aligned_cols=270 Identities=10% Similarity=0.127 Sum_probs=185.0
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCe--EEEEecCCCCCccccccceEEEEEEcCC-eEEEEeCCCCEEEEEeec
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRL--HVRTFRPQHSDRLGQFSRAVSGIIITDS-QLIFATLDGDIHVAVIDD 221 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~--~~~tl~gh~~~~~~~~s~~V~~i~f~g~-~LasgS~D~tIkvWd~~~ 221 (453)
|+|++|-+ ..|.++++|+++||+-+..-. .++.+. - ..+. -.-..|+..|. .+++++.-.-...||+.+
T Consensus 216 I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~--l-~~fP---i~~a~f~p~G~~~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 216 ITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIH--L-EKFP---IQKAEFAPNGHSVIFTSGRRKYLYSYDLET 289 (514)
T ss_pred ceEEEecCCCceEEEecCCCcEEEEEecCccChhheeee--e-ccCc---cceeeecCCCceEEEecccceEEEEeeccc
Confidence 89999987 589999999999999985332 333331 1 1111 11233555677 788888888899999987
Q ss_pred CC---cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeecccee
Q 046773 222 VA---NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVG 298 (453)
Q Consensus 222 ~g---~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~ 298 (453)
.- +.+..++....+ .....|||+++ |+..+..+-|.|-...|++.+.. ....+.|.
T Consensus 290 ak~~k~~~~~g~e~~~~---e~FeVShd~~f---ia~~G~~G~I~lLhakT~eli~s---------------~KieG~v~ 348 (514)
T KOG2055|consen 290 AKVTKLKPPYGVEEKSM---ERFEVSHDSNF---IAIAGNNGHIHLLHAKTKELITS---------------FKIEGVVS 348 (514)
T ss_pred cccccccCCCCcccchh---heeEecCCCCe---EEEcccCceEEeehhhhhhhhhe---------------eeeccEEe
Confidence 21 233333331111 13567899986 66778889999999989884311 01235577
Q ss_pred EEEEcCCc--eEEEEcCCcEEEEECCCCceEEEEe--eccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCC--
Q 046773 299 RVRVTSHE--SAVACTSSRVITFDLRNQGMVLGER--GYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDT-- 372 (453)
Q Consensus 299 ~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~--g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~t-- 372 (453)
.+.|+.++ ++++++++.|-+||+++..|+++.+ |-.++ ...|.++++..+|+||..| .+-|++-++
T Consensus 349 ~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~g-ts~~~S~ng~ylA~GS~~G-------iVNIYd~~s~~ 420 (514)
T KOG2055|consen 349 DFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHG-TSLCISLNGSYLATGSDSG-------IVNIYDGNSCF 420 (514)
T ss_pred eEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccce-eeeeecCCCceEEeccCcc-------eEEEeccchhh
Confidence 78888665 3444567899999999999998863 32222 2356778899999999999 999998653
Q ss_pred ----CeeEEEEEecCCCeeEEEEeeCCCeEEEEeC---CeEEEEECCCCeEEEEeccc---CCceEE--EEecCCCEEEE
Q 046773 373 ----FEEVCRFSLRADRNVNVMGCMNQGYALMCVE---GVIRVWEVEGGEYMYSFRER---IGEEVI--AFVGDDRHVAA 440 (453)
Q Consensus 373 ----g~~v~~l~~~~~~v~~~~~~~~~~~lls~s~---~tIrlWD~~tG~~l~tL~gh---~~~~V~--a~s~d~~~las 440 (453)
++++.++.--...|.++.|+++...|+.||. +.+||=-+.+-.-...++.. -+. |+ +|+|.+-++|-
T Consensus 421 ~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~-vtc~aFSP~sG~lAv 499 (514)
T KOG2055|consen 421 ASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGH-VTCMAFSPNSGYLAV 499 (514)
T ss_pred ccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccc-eEEEEecCCCceEEe
Confidence 3444443222234777888888887777775 79999888765444444322 233 55 78999999999
Q ss_pred E-eCCcEEEEecC
Q 046773 441 S-CGTNIHLWDFG 452 (453)
Q Consensus 441 g-~D~~IklWDl~ 452 (453)
| .++.|.||.+.
T Consensus 500 GNe~grv~l~kL~ 512 (514)
T KOG2055|consen 500 GNEAGRVHLFKLH 512 (514)
T ss_pred ecCCCceeeEeec
Confidence 9 99999999873
No 144
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.57 E-value=1.5e-13 Score=136.08 Aligned_cols=205 Identities=13% Similarity=0.113 Sum_probs=148.4
Q ss_pred ceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcC
Q 046773 225 ETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTS 304 (453)
Q Consensus 225 ~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~ 304 (453)
.+.++|++.+.+ ++++|-... .+||||.|.+|+||.+-.+-+.. .++.| -..|.+|.-.|+-|+.+|
T Consensus 75 P~v~GHt~~vLD----i~w~PfnD~--vIASgSeD~~v~vW~IPe~~l~~--~ltep-----vv~L~gH~rrVg~V~wHP 141 (472)
T KOG0303|consen 75 PLVCGHTAPVLD----IDWCPFNDC--VIASGSEDTKVMVWQIPENGLTR--DLTEP-----VVELYGHQRRVGLVQWHP 141 (472)
T ss_pred CCccCccccccc----cccCccCCc--eeecCCCCceEEEEECCCccccc--Ccccc-----eEEEeecceeEEEEeecc
Confidence 456678777643 677776553 48999999999999997655321 12222 146899999999999987
Q ss_pred Cc---eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEe
Q 046773 305 HE---SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSL 381 (453)
Q Consensus 305 ~~---~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~ 381 (453)
.- +++++.|.+|+|||+.||..+.++. |...++..+|+.+|..+++.+.|. .|||||..+++.+.+-..
T Consensus 142 tA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDK-------kvRv~dpr~~~~v~e~~~ 213 (472)
T KOG0303|consen 142 TAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDK-------KVRVIDPRRGTVVSEGVA 213 (472)
T ss_pred cchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccc-------eeEEEcCCCCcEeeeccc
Confidence 43 5677889999999999998777764 666666667778899999999988 999999999998887766
Q ss_pred cCCC-eeEEEEeeCCCeEEEEe----C-CeEEEEECCC---CeEEEEecccCCceEE-EEecCCCEE-EEE-eCCcEEEE
Q 046773 382 RADR-NVNVMGCMNQGYALMCV----E-GVIRVWEVEG---GEYMYSFRERIGEEVI-AFVGDDRHV-AAS-CGTNIHLW 449 (453)
Q Consensus 382 ~~~~-v~~~~~~~~~~~lls~s----~-~tIrlWD~~t---G~~l~tL~gh~~~~V~-a~s~d~~~l-asg-~D~~IklW 449 (453)
|... -..++|-.++. +++.+ + ..+-|||... .--+++|..-.+. +. -+.+|..+| .+| -|+.||-+
T Consensus 214 heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGv-l~PFyD~dt~ivYl~GKGD~~IRYy 291 (472)
T KOG0303|consen 214 HEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGV-LLPFYDPDTSIVYLCGKGDSSIRYF 291 (472)
T ss_pred ccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEeccCCce-EEeeecCCCCEEEEEecCCcceEEE
Confidence 6533 33455666666 44432 2 7999998765 3345666544444 33 345788876 578 99999998
Q ss_pred ecC
Q 046773 450 DFG 452 (453)
Q Consensus 450 Dl~ 452 (453)
.+.
T Consensus 292 Eit 294 (472)
T KOG0303|consen 292 EIT 294 (472)
T ss_pred Eec
Confidence 764
No 145
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.57 E-value=3.1e-14 Score=144.31 Aligned_cols=231 Identities=13% Similarity=0.175 Sum_probs=162.6
Q ss_pred eEEEEEEcC--CeEEEEeCCCCEEEEEeecCCcceEEeeecceecCc--eEEEEeCCCceeeEEEEeeCCCeEEEeeCCC
Q 046773 194 AVSGIIITD--SQLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDG--VLIDFTGCSRYWVGLYAGLAGRAFHIWDRQA 269 (453)
Q Consensus 194 ~V~~i~f~g--~~LasgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~--~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~t 269 (453)
-|-++.+++ +.+.|| --+.|||||+..+|-..-..+..-...+. ...-..|||+. |.+|+.-.|+.|||+.+
T Consensus 421 vVcAvtIS~~trhVyTg-GkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrt---LivGGeastlsiWDLAa 496 (705)
T KOG0639|consen 421 VVCAVTISNPTRHVYTG-GKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRT---LIVGGEASTLSIWDLAA 496 (705)
T ss_pred EEEEEEecCCcceeEec-CCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCce---EEeccccceeeeeeccC
Confidence 355566663 345554 56789999998765211111111111111 13567899996 88999999999999988
Q ss_pred Cc-EEecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecC
Q 046773 270 EE-VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNA 346 (453)
Q Consensus 270 g~-~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g 346 (453)
.. .+. ..|+.-.-.+.+++++|+.. ++.|+|+.|+||||.+...++++.||+.+..+..++.+|
T Consensus 497 pTprik-------------aeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dG 563 (705)
T KOG0639|consen 497 PTPRIK-------------AELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDG 563 (705)
T ss_pred CCcchh-------------hhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCC
Confidence 66 211 01222223456678888874 455789999999999876667778998888777777889
Q ss_pred CEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCC
Q 046773 347 EAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIG 425 (453)
Q Consensus 347 ~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~ 425 (453)
.+|=++.-|. ++|-||..++..++...|. +.|.++-.||++.+++.+=. +.|.|--+ ++...|.|.-|..
T Consensus 564 tklWTGGlDn-------tvRcWDlregrqlqqhdF~-SQIfSLg~cP~~dWlavGMens~vevlh~-skp~kyqlhlheS 634 (705)
T KOG0639|consen 564 TKLWTGGLDN-------TVRCWDLREGRQLQQHDFS-SQIFSLGYCPTGDWLAVGMENSNVEVLHT-SKPEKYQLHLHES 634 (705)
T ss_pred ceeecCCCcc-------ceeehhhhhhhhhhhhhhh-hhheecccCCCccceeeecccCcEEEEec-CCccceeeccccc
Confidence 9999999888 9999999998776665554 34778888999999887766 66665544 3555666766666
Q ss_pred ceEE--EEecCCCEEEEE-eCCcEEEEec
Q 046773 426 EEVI--AFVGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 426 ~~V~--a~s~d~~~lasg-~D~~IklWDl 451 (453)
. |- .|++-|++.||. .|+-+..|..
T Consensus 635 c-VLSlKFa~cGkwfvStGkDnlLnawrt 662 (705)
T KOG0639|consen 635 C-VLSLKFAYCGKWFVSTGKDNLLNAWRT 662 (705)
T ss_pred E-EEEEEecccCceeeecCchhhhhhccC
Confidence 5 66 578999999987 9999888864
No 146
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.56 E-value=1e-13 Score=136.67 Aligned_cols=150 Identities=15% Similarity=0.224 Sum_probs=111.9
Q ss_pred ceEEEEeCC--CceeeEEEEeeCCCeEEEeeCCCCc-EEecccccCCcceeeeeeeeeeccceeEEEEcCCc--e-EEEE
Q 046773 238 GVLIDFTGC--SRYWVGLYAGLAGRAFHIWDRQAEE-VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--S-AVAC 311 (453)
Q Consensus 238 ~~~v~Fs~d--g~~~~~LaSgS~D~tIrvWD~~tg~-~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~-~vas 311 (453)
+..++|||- |+ |+||..-+.|++|...+|. .+- . ..+.+|+..|-.++.||.. . +++|
T Consensus 214 Gy~LdWSp~~~g~----LlsGDc~~~I~lw~~~~g~W~vd------~------~Pf~gH~~SVEDLqWSptE~~vfaScS 277 (440)
T KOG0302|consen 214 GYGLDWSPIKTGR----LLSGDCVKGIHLWEPSTGSWKVD------Q------RPFTGHTKSVEDLQWSPTEDGVFASCS 277 (440)
T ss_pred ceeeecccccccc----cccCccccceEeeeeccCceeec------C------ccccccccchhhhccCCccCceEEeee
Confidence 345888883 44 6788778899999999987 221 0 2467899999999998754 3 4445
Q ss_pred cCCcEEEEECCCC---ceEEEEeeccCCeEEEEEEecC--CEEEEEeCCCccccCcceEEEEEcCC---CeeEEEEEecC
Q 046773 312 TSSRVITFDLRNQ---GMVLGERGYGRGLYVTSVDVNA--EAYIVVENRELENQNRRLAIVRRVDT---FEEVCRFSLRA 383 (453)
Q Consensus 312 ~d~tIrlWDl~t~---~~~~~~~g~~~~~~v~~~~~~g--~~l~s~s~dg~~~~~~~~i~Iw~~~t---g~~v~~l~~~~ 383 (453)
.|++|||||++.+ .|+.+ ..|... |+.+++++ ..|++++.+| +++|||+.+ ++++.+|+.|.
T Consensus 278 ~DgsIrIWDiRs~~~~~~~~~-kAh~sD--VNVISWnr~~~lLasG~DdG-------t~~iwDLR~~~~~~pVA~fk~Hk 347 (440)
T KOG0302|consen 278 CDGSIRIWDIRSGPKKAAVST-KAHNSD--VNVISWNRREPLLASGGDDG-------TLSIWDLRQFKSGQPVATFKYHK 347 (440)
T ss_pred cCceEEEEEecCCCccceeEe-eccCCc--eeeEEccCCcceeeecCCCc-------eEEEEEhhhccCCCcceeEEecc
Confidence 6899999999998 45444 445444 45555554 3688888899 999999875 57889999999
Q ss_pred CCeeEEEEeeCCCeEEEEeC--CeEEEEECCC
Q 046773 384 DRNVNVMGCMNQGYALMCVE--GVIRVWEVEG 413 (453)
Q Consensus 384 ~~v~~~~~~~~~~~lls~s~--~tIrlWD~~t 413 (453)
..+.++.++|.....+++++ ..|-|||+..
T Consensus 348 ~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 348 APITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred CCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 88999999997655554443 9999999964
No 147
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=4.3e-13 Score=144.23 Aligned_cols=209 Identities=13% Similarity=0.156 Sum_probs=154.7
Q ss_pred eEEEEEEecCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecC
Q 046773 145 LTCRCLTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDV 222 (453)
Q Consensus 145 v~v~~lafs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~ 222 (453)
..|+|++-...++++||.|+||.++....++.=..|. +|.-.++.++|+ |..+|.||.|-.|||=+....
T Consensus 57 ~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~--------Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~ 128 (933)
T KOG1274|consen 57 ELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILA--------RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS 128 (933)
T ss_pred ceeEEEeecccceEEeeccceEEEeeCCCCCccceee--------eeeccceEEEEecCCcEEEeecCceeEEEEecccc
Confidence 3388999988899999999999999998887421111 122245667776 558999999999999988763
Q ss_pred C-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccC---Ccceeeeeeeeeecccee
Q 046773 223 A-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTD---HNTVMGWRMLTEFTEFVG 298 (453)
Q Consensus 223 g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~---~~~v~~w~~l~~h~~~v~ 298 (453)
. ...+++|.+.|. .|.|+|++.+ ||+.+.|++|+|||+.++.+.. ++++ .+.. ..+..++
T Consensus 129 s~~~~lrgh~apVl----~l~~~p~~~f---LAvss~dG~v~iw~~~~~~~~~--tl~~v~k~n~~-------~~s~i~~ 192 (933)
T KOG1274|consen 129 SQEKVLRGHDAPVL----QLSYDPKGNF---LAVSSCDGKVQIWDLQDGILSK--TLTGVDKDNEF-------ILSRICT 192 (933)
T ss_pred chheeecccCCcee----eeeEcCCCCE---EEEEecCceEEEEEcccchhhh--hcccCCccccc-------cccceee
Confidence 3 677888988775 4999999997 8999999999999999988321 1111 1100 1134567
Q ss_pred EEEEcCCc--eEEEEcCCcEEEEECCCCceEEEE--eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCC--
Q 046773 299 RVRVTSHE--SAVACTSSRVITFDLRNQGMVLGE--RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDT-- 372 (453)
Q Consensus 299 ~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~--~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~t-- 372 (453)
.++++|++ +++.+.|++|++++..+......+ ..+.....+..++|.|.+||+++.++ .|.|||+++
T Consensus 193 ~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g-------~I~vWnv~t~~ 265 (933)
T KOG1274|consen 193 RLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDG-------QILVWNVDTHE 265 (933)
T ss_pred eeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCC-------cEEEEecccch
Confidence 78899874 566789999999999987655554 23333466778999999999999999 999999995
Q ss_pred ----CeeEEEEEecCC
Q 046773 373 ----FEEVCRFSLRAD 384 (453)
Q Consensus 373 ----g~~v~~l~~~~~ 384 (453)
...|+.+.++++
T Consensus 266 ~~~~~~~Vc~~aw~p~ 281 (933)
T KOG1274|consen 266 RHEFKRAVCCEAWKPN 281 (933)
T ss_pred hccccceeEEEecCCC
Confidence 344555555553
No 148
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=2e-12 Score=135.35 Aligned_cols=226 Identities=11% Similarity=0.139 Sum_probs=156.9
Q ss_pred eEEEEEEc--CCeEEEEeCCCCEEEEEeecCC---cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCC
Q 046773 194 AVSGIIIT--DSQLIFATLDGDIHVAVIDDVA---NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQ 268 (453)
Q Consensus 194 ~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g---~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~ 268 (453)
.|.++||+ ...||-+=.|+.|.+||+.. + ...+.++... .-..++|++.+| |+|.+.+++|.-||+.
T Consensus 27 ~I~slA~s~kS~~lAvsRt~g~IEiwN~~~-~w~~~~vi~g~~dr---sIE~L~W~e~~R----LFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRTDGNIEIWNLSN-NWFLEPVIHGPEDR---SIESLAWAEGGR----LFSSGLSGSITEWDLH 98 (691)
T ss_pred ceEEEEEeccCCceeeeccCCcEEEEccCC-CceeeEEEecCCCC---ceeeEEEccCCe----EEeecCCceEEEEecc
Confidence 56778885 56799999999999999987 4 2333333321 112489998777 8899999999999999
Q ss_pred CCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEE--EEe
Q 046773 269 AEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTS--VDV 344 (453)
Q Consensus 269 tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~--~~~ 344 (453)
+++...- +....+.+.+++++|.+ ++++|.|+.+...+..++........-.+...+.+ +++
T Consensus 99 ~lk~~~~--------------~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~ 164 (691)
T KOG2048|consen 99 TLKQKYN--------------IDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP 164 (691)
T ss_pred cCceeEE--------------ecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecC
Confidence 9884321 12233677888888754 56778889777778777643322211122234455 455
Q ss_pred cCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEE-----EecC-CC--eeEEEEeeCCCeEEEEeC-CeEEEEECCCCe
Q 046773 345 NAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRF-----SLRA-DR--NVNVMGCMNQGYALMCVE-GVIRVWEVEGGE 415 (453)
Q Consensus 345 ~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l-----~~~~-~~--v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~ 415 (453)
++.+++.||.|| .|+|||+.+++.+... .++. +. |-++.+- -++.++++.+ |+|+.||...|.
T Consensus 165 ~~~~i~~Gs~Dg-------~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~gT 236 (691)
T KOG2048|consen 165 TGTKIAGGSIDG-------VIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIFGT 236 (691)
T ss_pred CccEEEecccCc-------eEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccCcc
Confidence 666789999999 9999999999877622 2222 11 3344444 3445555555 999999999999
Q ss_pred EEEEecccCCceEEEE--ecCCCEEEEE-eCCcEEEEe
Q 046773 416 YMYSFRERIGEEVIAF--VGDDRHVAAS-CGTNIHLWD 450 (453)
Q Consensus 416 ~l~tL~gh~~~~V~a~--s~d~~~lasg-~D~~IklWD 450 (453)
.++.+.-|... |.++ ++++.++.++ .|++|..+.
T Consensus 237 LiqS~~~h~ad-Vl~Lav~~~~d~vfsaGvd~~ii~~~ 273 (691)
T KOG2048|consen 237 LIQSHSCHDAD-VLALAVADNEDRVFSAGVDPKIIQYS 273 (691)
T ss_pred hhhhhhhhhcc-eeEEEEcCCCCeEEEccCCCceEEEE
Confidence 99999999888 8855 4676788887 888876543
No 149
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.52 E-value=3.6e-13 Score=130.65 Aligned_cols=232 Identities=9% Similarity=0.132 Sum_probs=158.9
Q ss_pred EEcCCeEEEEeCCCCEEEEEeec-------CCc------ceEEeeecceecCce---E-EEEeCCCceeeEEEEeeCCCe
Q 046773 199 IITDSQLIFATLDGDIHVAVIDD-------VAN------ETRTAHFGSVMDDGV---L-IDFTGCSRYWVGLYAGLAGRA 261 (453)
Q Consensus 199 ~f~g~~LasgS~D~tIkvWd~~~-------~g~------~~~~~~~~~v~~~~~---~-v~Fs~dg~~~~~LaSgS~D~t 261 (453)
++||.-|.+-|.|.++++|++-. .+. ..++...+..+-+-+ . -.-.|+..+ .|+.|.|.-
T Consensus 58 SPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l---~a~ssr~~P 134 (406)
T KOG2919|consen 58 SPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNL---FAVSSRDQP 134 (406)
T ss_pred CCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccce---eeeccccCc
Confidence 46788889999999999999743 110 111111121111000 0 011344332 567789999
Q ss_pred EEEeeCCCCcEEecccccCCcceeeeeeeeeeccc---eeEEEEcCCce-EEEEcCCcEEEEEC-CCCc-eEE-EE--e-
Q 046773 262 FHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEF---VGRVRVTSHES-AVACTSSRVITFDL-RNQG-MVL-GE--R- 331 (453)
Q Consensus 262 IrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~---v~~v~~s~~~~-~vas~d~tIrlWDl-~t~~-~~~-~~--~- 331 (453)
|+|||.-||+...- .. ...|-+. .-+++|+|++. +.|+...+||++|+ ++|. |.. +. .
T Consensus 135 Ih~wdaftG~lraS--------y~----~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~ 202 (406)
T KOG2919|consen 135 IHLWDAFTGKLRAS--------YR----AYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKG 202 (406)
T ss_pred eeeeeccccccccc--------hh----hhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcc
Confidence 99999999983110 00 0122222 24689999885 55666689999999 5553 221 11 1
Q ss_pred eccCCeEEEEEEecC---CEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC--CeE
Q 046773 332 GYGRGLYVTSVDVNA---EAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE--GVI 406 (453)
Q Consensus 332 g~~~~~~v~~~~~~g---~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~--~tI 406 (453)
-.++...+.++++++ ..++.+|... .+-|+..+...++..+-+|..+|..+.++++|..+.+++- -.|
T Consensus 203 k~gq~giisc~a~sP~~~~~~a~gsY~q-------~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkI 275 (406)
T KOG2919|consen 203 KFGQKGIISCFAFSPMDSKTLAVGSYGQ-------RVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKI 275 (406)
T ss_pred cccccceeeeeeccCCCCcceeeecccc-------eeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeE
Confidence 122334455666554 3678888888 8889999999999998899999999999999999988876 789
Q ss_pred EEEECCC-CeEEEEecccCCc---eEE-EEecCCCEEEEE-eCCcEEEEecC
Q 046773 407 RVWEVEG-GEYMYSFRERIGE---EVI-AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 407 rlWD~~t-G~~l~tL~gh~~~---~V~-a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
-.||+.. +..++.|.+|.+. +|. .+.|++++|||| .||.|++||+.
T Consensus 276 l~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk 327 (406)
T KOG2919|consen 276 LCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLK 327 (406)
T ss_pred EEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecC
Confidence 9999985 6778999998763 344 677999999999 99999999985
No 150
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.52 E-value=4.1e-13 Score=136.16 Aligned_cols=206 Identities=17% Similarity=0.158 Sum_probs=155.3
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecCC--cceEEee
Q 046773 155 LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDVA--NETRTAH 230 (453)
Q Consensus 155 ~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g--~~~~~~~ 230 (453)
.|+++|+..++|||||+....|.|.|++|.. .|.++-+. +..||++|..|.|.|-.+.+ + ..++.--
T Consensus 92 ~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~s--------tvt~v~YN~~DeyiAsvs~gGdiiih~~~t-~~~tt~f~~~ 162 (673)
T KOG4378|consen 92 LYEISGGQSGCVKIWDLRAKLIHRFLKDHQS--------TVTYVDYNNTDEYIASVSDGGDIIIHGTKT-KQKTTTFTID 162 (673)
T ss_pred eeeeccCcCceeeehhhHHHHHhhhccCCcc--------eeEEEEecCCcceeEEeccCCcEEEEeccc-CccccceecC
Confidence 6999999999999999998889999998764 68888775 67899999999999988877 4 2223222
Q ss_pred ecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc-e--
Q 046773 231 FGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE-S-- 307 (453)
Q Consensus 231 ~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~-~-- 307 (453)
.+..+ .+|.|+|..|. .|.++|.+++|.|||+....-+. +-+..|..|...|+|+|-. .
T Consensus 163 sgqsv---Rll~ys~skr~--lL~~asd~G~VtlwDv~g~sp~~-------------~~~~~HsAP~~gicfspsne~l~ 224 (673)
T KOG4378|consen 163 SGQSV---RLLRYSPSKRF--LLSIASDKGAVTLWDVQGMSPIF-------------HASEAHSAPCRGICFSPSNEALL 224 (673)
T ss_pred CCCeE---EEeecccccce--eeEeeccCCeEEEEeccCCCccc-------------chhhhccCCcCcceecCCccceE
Confidence 23322 26899999887 47889999999999996655211 3466899999999999744 2
Q ss_pred EEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcC-CCeeEEEEEecCCCe
Q 046773 308 AVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVD-TFEEVCRFSLRADRN 386 (453)
Q Consensus 308 ~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~-tg~~v~~l~~~~~~v 386 (453)
++.+.|..|-++|++......++.. .+.....+|.++|..|+.+++.| .+--+|+. +.+++..+..|...|
T Consensus 225 vsVG~Dkki~~yD~~s~~s~~~l~y-~~Plstvaf~~~G~~L~aG~s~G-------~~i~YD~R~~k~Pv~v~sah~~sV 296 (673)
T KOG4378|consen 225 VSVGYDKKINIYDIRSQASTDRLTY-SHPLSTVAFSECGTYLCAGNSKG-------ELIAYDMRSTKAPVAVRSAHDASV 296 (673)
T ss_pred EEecccceEEEeecccccccceeee-cCCcceeeecCCceEEEeecCCc-------eEEEEecccCCCCceEeeecccce
Confidence 3335688999999997643333321 23344577888899999999999 67777776 467788888888888
Q ss_pred eEEEEeeCC
Q 046773 387 VNVMGCMNQ 395 (453)
Q Consensus 387 ~~~~~~~~~ 395 (453)
..++|-+..
T Consensus 297 t~vafq~s~ 305 (673)
T KOG4378|consen 297 TRVAFQPSP 305 (673)
T ss_pred eEEEeeecc
Confidence 888886654
No 151
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=2e-13 Score=140.38 Aligned_cols=244 Identities=18% Similarity=0.184 Sum_probs=158.7
Q ss_pred CCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCC--------CeEEEEecCCCCCccccccceEEEEEE--cCCeE
Q 046773 138 DVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTT--------RLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQL 205 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~t--------g~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~L 205 (453)
-|. |. ++.++|-+ ..|++++.|++|++|+++. -+.+.||++|.+ .|-+++. .+..+
T Consensus 292 s~~--d~--ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~g--------PVl~v~v~~n~~~~ 359 (577)
T KOG0642|consen 292 SHD--DC--IRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEG--------PVLCVVVPSNGEHC 359 (577)
T ss_pred cch--hh--hhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccC--------ceEEEEecCCceEE
Confidence 476 55 56777754 6899999999999999922 246889999876 3555554 47789
Q ss_pred EEEeCCCCEEEEEeec-------C----CcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcE--
Q 046773 206 IFATLDGDIHVAVIDD-------V----ANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEV-- 272 (453)
Q Consensus 206 asgS~D~tIkvWd~~~-------~----g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~-- 272 (453)
.||+.|++|+.|++-. + ...++.+|++.+. .+++|+.-.. |.|+|.|+|+|+|+......
T Consensus 360 ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw----~l~~s~~~~~---Llscs~DgTvr~w~~~~~~~~~ 432 (577)
T KOG0642|consen 360 YSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVW----LLALSSTKDR---LLSCSSDGTVRLWEPTEESPCT 432 (577)
T ss_pred EeeccCceeeeeccCCCCCcccccCcchhccceecccccee----eeeecccccc---eeeecCCceEEeeccCCcCccc
Confidence 9999999999996532 1 1356677776654 4788887665 88999999999999866553
Q ss_pred EecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEcCCcEE---EEECCCCceEEEEe-----ec---cCCeEEEE
Q 046773 273 FVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSSRVI---TFDLRNQGMVLGER-----GY---GRGLYVTS 341 (453)
Q Consensus 273 ~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~d~tIr---lWDl~t~~~~~~~~-----g~---~~~~~v~~ 341 (453)
|.. + ..| ..-.+|.+.....+....+.+.+ +.|+++...++.+. +. .+-+.|.+
T Consensus 433 f~~-----~---------~e~-g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs 497 (577)
T KOG0642|consen 433 FGE-----P---------KEH-GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVS 497 (577)
T ss_pred cCC-----c---------ccc-CCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEe
Confidence 311 0 011 01112222211111111122222 33334333322220 11 01111111
Q ss_pred EEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEe
Q 046773 342 VDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSF 420 (453)
Q Consensus 342 ~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL 420 (453)
.+.....+++--+. .|++.|..++..+..+..|.+.+.++++.+++.++++++. +.|++|.+..-.|....
T Consensus 498 -~~~~~~~~~~hed~-------~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es 569 (577)
T KOG0642|consen 498 -HPTADITFTAHEDR-------SIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLES 569 (577)
T ss_pred -cCCCCeeEecccCC-------ceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecc
Confidence 23334445554555 9999999999999999999999999999999999999887 99999999888887665
Q ss_pred ccc
Q 046773 421 RER 423 (453)
Q Consensus 421 ~gh 423 (453)
..|
T Consensus 570 ~~~ 572 (577)
T KOG0642|consen 570 TAH 572 (577)
T ss_pred ccc
Confidence 544
No 152
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.49 E-value=1.4e-12 Score=126.15 Aligned_cols=180 Identities=9% Similarity=0.103 Sum_probs=137.9
Q ss_pred CCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCC----ceEEEEcCCcEEEEEC
Q 046773 246 CSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSH----ESAVACTSSRVITFDL 321 (453)
Q Consensus 246 dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~----~~~vas~d~tIrlWDl 321 (453)
+|++ +||||.|-||+|+|+.+...+ ..|-.|++.++++.|.+. .+++++.|+.|.+||.
T Consensus 52 s~~~---~aSGssDetI~IYDm~k~~ql--------------g~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~ 114 (362)
T KOG0294|consen 52 SGPY---VASGSSDETIHIYDMRKRKQL--------------GILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRV 114 (362)
T ss_pred ccee---EeccCCCCcEEEEeccchhhh--------------cceeccccceEEEEecCCcchhheeeecCCCcEEEEEc
Confidence 4554 899999999999999886632 235578899999999854 3677778899999999
Q ss_pred CCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEE
Q 046773 322 RNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMC 401 (453)
Q Consensus 322 ~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~ 401 (453)
..-.++..+.+|.+++.-.++.|++..-++.+.|+ .++.|++-+|..-..+.+... -..+.|++.|.+.+..
T Consensus 115 ~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~-------~lr~WNLV~Gr~a~v~~L~~~-at~v~w~~~Gd~F~v~ 186 (362)
T KOG0294|consen 115 GSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQ-------VLRTWNLVRGRVAFVLNLKNK-ATLVSWSPQGDHFVVS 186 (362)
T ss_pred CCeEEeeeecccccccceeEecCCCceEEEEcCCc-------eeeeehhhcCccceeeccCCc-ceeeEEcCCCCEEEEE
Confidence 98888888888988876677889998888889999 999999998865444433322 2336788888887777
Q ss_pred eCCeEEEEECCCCeEEEEecccCCceEEEEe-cCCCEEEEE-eCCcEEEEecC
Q 046773 402 VEGVIRVWEVEGGEYMYSFRERIGEEVIAFV-GDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 402 s~~tIrlWD~~tG~~l~tL~gh~~~~V~a~s-~d~~~lasg-~D~~IklWDl~ 452 (453)
..+.|-||.+.+......+..... +.++- -++..|++| .|+.|++||..
T Consensus 187 ~~~~i~i~q~d~A~v~~~i~~~~r--~l~~~~l~~~~L~vG~d~~~i~~~D~d 237 (362)
T KOG0294|consen 187 GRNKIDIYQLDNASVFREIENPKR--ILCATFLDGSELLVGGDNEWISLKDTD 237 (362)
T ss_pred eccEEEEEecccHhHhhhhhcccc--ceeeeecCCceEEEecCCceEEEeccC
Confidence 778899999998877666643322 23333 366788888 99999999964
No 153
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.49 E-value=7.2e-12 Score=124.70 Aligned_cols=272 Identities=14% Similarity=0.153 Sum_probs=159.3
Q ss_pred EEEEEecC---CEEEEEeCCCcEEEEECCCCeE---------EEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCC
Q 046773 147 CRCLTLSD---LYLACGFADGAVRLFDLTTRLH---------VRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDG 212 (453)
Q Consensus 147 v~~lafs~---~~LaSGS~D~TIrlWD~~tg~~---------~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~ 212 (453)
|+.+.|-+ .+||||+.|..||||-+++++. +-+|..|+ ++|.++-|+ |++||||+.++
T Consensus 16 v~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~--------~aVN~vRf~p~gelLASg~D~g 87 (434)
T KOG1009|consen 16 VYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHT--------RAVNVVRFSPDGELLASGGDGG 87 (434)
T ss_pred eEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCc--------ceeEEEEEcCCcCeeeecCCCc
Confidence 67777754 4899999999999999876642 33455544 478888886 56999999999
Q ss_pred CEEEEEeecCC-----------------cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEec
Q 046773 213 DIHVAVIDDVA-----------------NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVG 275 (453)
Q Consensus 213 tIkvWd~~~~g-----------------~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g 275 (453)
.|.+|-..... ...+++|...+. -++.+||+.+ |++||.|+++++||+..|+...
T Consensus 88 ~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diy----dL~Ws~d~~~---l~s~s~dns~~l~Dv~~G~l~~- 159 (434)
T KOG1009|consen 88 EVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIY----DLAWSPDSNF---LVSGSVDNSVRLWDVHAGQLLA- 159 (434)
T ss_pred eEEEEEecCcCCccccchhhhCccceEEEEEecccccchh----hhhccCCCce---eeeeeccceEEEEEeccceeEe-
Confidence 99999765200 122334444433 3789999986 8899999999999999999653
Q ss_pred ccccCCcceeeeeeeeeeccceeEEEEcCCceEEE--EcCCcEEEEECCCCceEEEE--------eeccCCeEE------
Q 046773 276 GDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVA--CTSSRVITFDLRNQGMVLGE--------RGYGRGLYV------ 339 (453)
Q Consensus 276 ~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~va--s~d~tIrlWDl~t~~~~~~~--------~g~~~~~~v------ 339 (453)
++-+|...|.-|+.+|-+..++ |.|...+..++...+.+... .++.....+
T Consensus 160 -------------~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhD 226 (434)
T KOG1009|consen 160 -------------ILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHD 226 (434)
T ss_pred -------------eccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeec
Confidence 2445666777777777655444 34443444444332221110 011111111
Q ss_pred ---------EEEEecCCEEEEEeCCCcc--ccCcceEEEEEcC-CCeeEEE-----------------EEecCCCeeEEE
Q 046773 340 ---------TSVDVNAEAYIVVENRELE--NQNRRLAIVRRVD-TFEEVCR-----------------FSLRADRNVNVM 390 (453)
Q Consensus 340 ---------~~~~~~g~~l~s~s~dg~~--~~~~~~i~Iw~~~-tg~~v~~-----------------l~~~~~~v~~~~ 390 (453)
.+|+|+|..|++.+.--.. +-+.++..+.+-. ..+++.. +.+.|-......
T Consensus 227 eTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~ 306 (434)
T KOG1009|consen 227 ETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFL 306 (434)
T ss_pred CchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccc
Confidence 3566777766654321100 0001222333211 0111111 111121111112
Q ss_pred EeeCCCeEEEEeC-CeEEEEECCCCeEEEEecc-cCCceEE--EEecCCCEEEEE-eCCcEEE
Q 046773 391 GCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRE-RIGEEVI--AFVGDDRHVAAS-CGTNIHL 448 (453)
Q Consensus 391 ~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~g-h~~~~V~--a~s~d~~~lasg-~D~~Ikl 448 (453)
+..+.+.+.+.+. +.|.|+|.++-+.+....+ |-.. ++ ++++||..|+.+ .||-.-+
T Consensus 307 ~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~-iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 307 FVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSA-ITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred cccccceEEEEeecceEEEeccccccceEEEeeeeeee-ecceeecCCCcEEEEeccCCceEE
Confidence 3344555555565 9999999999877766644 3333 55 778999987655 8885443
No 154
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=5.2e-12 Score=122.32 Aligned_cols=270 Identities=14% Similarity=0.178 Sum_probs=169.9
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE--cCCeEEEEeCCCCEEEEEeecC
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATLDGDIHVAVIDDV 222 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~D~tIkvWd~~~~ 222 (453)
..|++||. .+||.|..||.|-|||+.|..--++|.+|.. .|.+++. +|++|+|+|.|..|++||+..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~--------pi~sl~WS~dgr~LltsS~D~si~lwDl~~- 96 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVR--------PITSLCWSRDGRKLLTSSRDWSIKLWDLLK- 96 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhcccc--------ceeEEEecCCCCEeeeecCCceeEEEeccC-
Confidence 58999994 8999999999999999999998899988754 6888886 589999999999999999987
Q ss_pred CcceEEeee-cceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc--EEecccccCCcceeeeeeeeeeccceeE
Q 046773 223 ANETRTAHF-GSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE--VFVGGDLTDHNTVMGWRMLTEFTEFVGR 299 (453)
Q Consensus 223 g~~~~~~~~-~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~--~~~g~~l~~~~~v~~w~~l~~h~~~v~~ 299 (453)
|-...+..- ..|. ...|+|.-+-. .+|+ =.+..-.|=++..+. ++. ..++.. | ...-.+
T Consensus 97 gs~l~rirf~spv~----~~q~hp~k~n~-~va~-~~~~sp~vi~~s~~~h~~Lp---~d~d~d------l---n~sas~ 158 (405)
T KOG1273|consen 97 GSPLKRIRFDSPVW----GAQWHPRKRNK-CVAT-IMEESPVVIDFSDPKHSVLP---KDDDGD------L---NSSASH 158 (405)
T ss_pred CCceeEEEccCccc----eeeeccccCCe-EEEE-EecCCcEEEEecCCceeecc---CCCccc------c---cccccc
Confidence 511111111 1111 13455543320 1222 123333344444332 211 011110 0 001112
Q ss_pred EEEcCCc--eEEEEcCCcEEEEECCCCceEEEEeecc-CCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCC----
Q 046773 300 VRVTSHE--SAVACTSSRVITFDLRNQGMVLGERGYG-RGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDT---- 372 (453)
Q Consensus 300 v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~g~~-~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~t---- 372 (453)
+-|++++ ++++.+.+.+-+.|.+|-+|+.-.+-.+ +++.-.-|+..|+.++.-+.|. +||.++...
T Consensus 159 ~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDR-------vIR~ye~~di~~~ 231 (405)
T KOG1273|consen 159 GVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDR-------VIRTYEISDIDDE 231 (405)
T ss_pred ccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCc-------eEEEEehhhhccc
Confidence 3455444 3444556889999999988875542222 3333345778899999888888 999987651
Q ss_pred C--eeE---EEEE---ecCCCeeEEEEeeCCCeEEEEeC--CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEE
Q 046773 373 F--EEV---CRFS---LRADRNVNVMGCMNQGYALMCVE--GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAA 440 (453)
Q Consensus 373 g--~~v---~~l~---~~~~~v~~~~~~~~~~~lls~s~--~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~las 440 (453)
| .++ +.++ -...| ....|+.+|.|+.+++. ..+.||...+|..++.|.|..|.... ...|-...|+|
T Consensus 232 ~r~~e~e~~~K~qDvVNk~~W-k~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~s 310 (405)
T KOG1273|consen 232 GRDGEVEPEHKLQDVVNKLQW-KKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIAS 310 (405)
T ss_pred CccCCcChhHHHHHHHhhhhh-hheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeee
Confidence 1 111 1110 00011 23567778899887776 89999999999999999998865233 34465556776
Q ss_pred EeCCcEEEEec
Q 046773 441 SCGTNIHLWDF 451 (453)
Q Consensus 441 g~D~~IklWDl 451 (453)
-.-|+|+||..
T Consensus 311 i~sg~v~iw~~ 321 (405)
T KOG1273|consen 311 IASGVVYIWAV 321 (405)
T ss_pred ccCCceEEEEe
Confidence 57789999964
No 155
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.49 E-value=9.2e-13 Score=130.62 Aligned_cols=195 Identities=12% Similarity=0.081 Sum_probs=131.2
Q ss_pred CCCCCCCeEEEEEEecC---CEEEEEeCCCcEEEEECCCCeE-------EEEecCCCCCccccccceEEEEEEcC---Ce
Q 046773 138 DVDNPDGLTCRCLTLSD---LYLACGFADGAVRLFDLTTRLH-------VRTFRPQHSDRLGQFSRAVSGIIITD---SQ 204 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~---~~LaSGS~D~TIrlWD~~tg~~-------~~tl~gh~~~~~~~~s~~V~~i~f~g---~~ 204 (453)
||+.| |..+++++ ..|||||.|.||+||++..+-. +..|.||.. .|.-++..+ ..
T Consensus 79 GHt~~----vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~r--------rVg~V~wHPtA~NV 146 (472)
T KOG0303|consen 79 GHTAP----VLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQR--------RVGLVQWHPTAPNV 146 (472)
T ss_pred Ccccc----ccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecce--------eEEEEeecccchhh
Confidence 89977 77888775 5899999999999999876654 445666543 566677664 57
Q ss_pred EEEEeCCCCEEEEEeecCCcceEE-eeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcc
Q 046773 205 LIFATLDGDIHVAVIDDVANETRT-AHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNT 283 (453)
Q Consensus 205 LasgS~D~tIkvWd~~~~g~~~~~-~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~ 283 (453)
|+|++.|.+|++||+.+ |...++ .|.+-+. ++.|+-||.. |++.+.|+.|||||.++|+...-
T Consensus 147 Llsag~Dn~v~iWnv~t-geali~l~hpd~i~----S~sfn~dGs~---l~TtckDKkvRv~dpr~~~~v~e-------- 210 (472)
T KOG0303|consen 147 LLSAGSDNTVSIWNVGT-GEALITLDHPDMVY----SMSFNRDGSL---LCTTCKDKKVRVIDPRRGTVVSE-------- 210 (472)
T ss_pred HhhccCCceEEEEeccC-CceeeecCCCCeEE----EEEeccCCce---eeeecccceeEEEcCCCCcEeee--------
Confidence 99999999999999998 622221 2544433 5899999986 88999999999999999995421
Q ss_pred eeeeeeeeeeccce-eEEEEcCCc-eEEEE----cCCcEEEEECCCCceEEE--EeeccCCeEEEEEEecCCEE-EEEeC
Q 046773 284 VMGWRMLTEFTEFV-GRVRVTSHE-SAVAC----TSSRVITFDLRNQGMVLG--ERGYGRGLYVTSVDVNAEAY-IVVEN 354 (453)
Q Consensus 284 v~~w~~l~~h~~~v-~~v~~s~~~-~~vas----~d~tIrlWDl~t~~~~~~--~~g~~~~~~v~~~~~~g~~l-~s~s~ 354 (453)
..+|.+.- .++-|-.++ +++.+ ++..+-|||..+-..... +.....++...-++++-+.+ +.+-+
T Consensus 211 ------~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKG 284 (472)
T KOG0303|consen 211 ------GVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKG 284 (472)
T ss_pred ------cccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecC
Confidence 12333211 123343333 33332 346799999876543322 22333445445567766654 55567
Q ss_pred CCccccCcceEEEEEcCCC
Q 046773 355 RELENQNRRLAIVRRVDTF 373 (453)
Q Consensus 355 dg~~~~~~~~i~Iw~~~tg 373 (453)
|+ .||-+.+...
T Consensus 285 D~-------~IRYyEit~d 296 (472)
T KOG0303|consen 285 DS-------SIRYFEITNE 296 (472)
T ss_pred Cc-------ceEEEEecCC
Confidence 77 9998887654
No 156
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.49 E-value=1.1e-10 Score=119.08 Aligned_cols=246 Identities=13% Similarity=0.138 Sum_probs=152.5
Q ss_pred ccccCceeeEEeeCCCCCCCCCCeEEEEEEecC-CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE
Q 046773 122 FRTRRYTHFNLYFDPSDVDNPDGLTCRCLTLSD-LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII 200 (453)
Q Consensus 122 w~~g~~~~~~~~~~~~gh~~~d~v~v~~lafs~-~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f 200 (453)
|+.+....+...|+ +++ . -.|.|++|.+ ..++||-.+++|-||+..+.+-.++...|.+ .|-+++.
T Consensus 229 ~~~~~l~k~~~~fe--k~e--k-k~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~g--------gv~~L~~ 295 (626)
T KOG2106|consen 229 LRGGSLVKRQGIFE--KRE--K-KFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDG--------GVFSLCM 295 (626)
T ss_pred ccCCceEEEeeccc--ccc--c-eEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCC--------ceEEEEE
Confidence 34444444444443 564 3 5699999987 4789999999999999988887777666654 3555654
Q ss_pred -cCCeEEEEeCCCCEEEEEeec-----------CC-cceE-Eeee-------------ccee----------cCce-EEE
Q 046773 201 -TDSQLIFATLDGDIHVAVIDD-----------VA-NETR-TAHF-------------GSVM----------DDGV-LID 242 (453)
Q Consensus 201 -~g~~LasgS~D~tIkvWd~~~-----------~g-~~~~-~~~~-------------~~v~----------~~~~-~v~ 242 (453)
.+-.|+||..|+.|..||-+- .| +++. .++. |.+. .+.. -++
T Consensus 296 lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla 375 (626)
T KOG2106|consen 296 LRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLA 375 (626)
T ss_pred ecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEE
Confidence 334577799999999998321 11 1111 1110 0000 0100 144
Q ss_pred EeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce-EEEEcCCcEEEEEC
Q 046773 243 FTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES-AVACTSSRVITFDL 321 (453)
Q Consensus 243 Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~-~vas~d~tIrlWDl 321 (453)
.+|+... |++++-|++++||| ..+.. |.. -..+++-++.|+|.+. ++++..+.--+-|.
T Consensus 376 ~hps~~q---~~T~gqdk~v~lW~--~~k~~-------------wt~--~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~ 435 (626)
T KOG2106|consen 376 THPSKNQ---LLTCGQDKHVRLWN--DHKLE-------------WTK--IIEDPAECADFHPSGVVAVGTATGRWFVLDT 435 (626)
T ss_pred cCCChhh---eeeccCcceEEEcc--CCcee-------------EEE--EecCceeEeeccCcceEEEeeccceEEEEec
Confidence 4555443 77999999999999 32211 211 1236788899998774 34455677788899
Q ss_pred CCCceEEEE-eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCC-eeEEEE-EecCCCeeEEEEeeCCCeE
Q 046773 322 RNQGMVLGE-RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTF-EEVCRF-SLRADRNVNVMGCMNQGYA 398 (453)
Q Consensus 322 ~t~~~~~~~-~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg-~~v~~l-~~~~~~v~~~~~~~~~~~l 398 (453)
++.. +.++ +. ..+..+..++|+|..+|.+|-|+ .|.|+.++.. ...... ..+..-+..+-+++|+.++
T Consensus 436 e~~~-lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~-------~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~ 506 (626)
T KOG2106|consen 436 ETQD-LVTIHTD-NEQLSVVRYSPDGAFLAVGSHDN-------HIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFL 506 (626)
T ss_pred ccce-eEEEEec-CCceEEEEEcCCCCEEEEecCCC-------eEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceE
Confidence 9854 4443 33 55678888999999999999999 8899877643 211111 1111224555566666665
Q ss_pred EEEeC-CeEEEE
Q 046773 399 LMCVE-GVIRVW 409 (453)
Q Consensus 399 ls~s~-~tIrlW 409 (453)
.+-+. -.|-.|
T Consensus 507 ~~~S~d~eiLyW 518 (626)
T KOG2106|consen 507 VSNSGDYEILYW 518 (626)
T ss_pred EeccCceEEEEE
Confidence 55444 455555
No 157
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=8.6e-12 Score=130.68 Aligned_cols=207 Identities=9% Similarity=-0.055 Sum_probs=126.7
Q ss_pred CCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCC---CeEEEeeCCCCcEEecccccCCcceeee
Q 046773 211 DGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAG---RAFHIWDRQAEEVFVGGDLTDHNTVMGW 287 (453)
Q Consensus 211 D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D---~tIrvWD~~tg~~~~g~~l~~~~~v~~w 287 (453)
+.+|.|||.+....+++..+...+. .+.|||||+. |+..|.+ .+|.+||+++++... +
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~----~p~wSPDG~~---la~~s~~~~~~~i~i~dl~tg~~~~------------l 243 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLM----SPAWSPDGSK---LAYVSFENKKSQLVVHDLRSGARKV------------V 243 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccc----cceEcCCCCE---EEEEEecCCCcEEEEEeCCCCceEE------------E
Confidence 4678999987622344444433222 3799999997 4454543 479999999886211 0
Q ss_pred eeeeeeccceeEEEEcCCce--EEEE-cCCcEE--EEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEe-CCCccccC
Q 046773 288 RMLTEFTEFVGRVRVTSHES--AVAC-TSSRVI--TFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVE-NRELENQN 361 (453)
Q Consensus 288 ~~l~~h~~~v~~v~~s~~~~--~vas-~d~tIr--lWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s-~dg~~~~~ 361 (453)
..+.+| ...++|+|++. +.++ .++.++ +||+.++.. .++..+.......+++|+|+.++.++ .++
T Consensus 244 ~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g----- 314 (429)
T PRK01742 244 ASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSG----- 314 (429)
T ss_pred ecCCCc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCC-----
Confidence 112222 33578998874 3333 356555 557776543 34433333333467889998877665 355
Q ss_pred cceEEEEEcCCC-eeEEEEEecCCCeeEEEEeeCCCeEEEEeCCeEEEEECCCCeEEEEecccCCceEEEEecCCCEEEE
Q 046773 362 RRLAIVRRVDTF-EEVCRFSLRADRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYMYSFRERIGEEVIAFVGDDRHVAA 440 (453)
Q Consensus 362 ~~~i~Iw~~~tg-~~v~~l~~~~~~v~~~~~~~~~~~lls~s~~tIrlWD~~tG~~l~tL~gh~~~~V~a~s~d~~~las 440 (453)
..+||+++.. .....+. +. . ....++|++++++..+...+-+||+.+|++......+... --+|+||++.|+.
T Consensus 315 --~~~I~~~~~~~~~~~~l~-~~-~-~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~~~~~-~~~~sPdG~~i~~ 388 (429)
T PRK01742 315 --SPQVYRMSASGGGASLVG-GR-G-YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSSTFLDE-SPSISPNGIMIIY 388 (429)
T ss_pred --CceEEEEECCCCCeEEec-CC-C-CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCCCCCC-CceECCCCCEEEE
Confidence 7788887642 2222222 11 1 3456788999887776644556999999765433333222 1268999999998
Q ss_pred E-eCCcEEEEec
Q 046773 441 S-CGTNIHLWDF 451 (453)
Q Consensus 441 g-~D~~IklWDl 451 (453)
+ .|+.+++|++
T Consensus 389 ~s~~g~~~~l~~ 400 (429)
T PRK01742 389 SSTQGLGKVLQL 400 (429)
T ss_pred EEcCCCceEEEE
Confidence 8 8888888874
No 158
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.48 E-value=3.6e-14 Score=150.75 Aligned_cols=220 Identities=14% Similarity=0.183 Sum_probs=147.1
Q ss_pred eEEEEEEc--CCeEEEEeCCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCC
Q 046773 194 AVSGIIIT--DSQLIFATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQA 269 (453)
Q Consensus 194 ~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~t 269 (453)
+|-+..|| |+.+++||.|.-+|||..++ + ....++|.+.+.. ++.+.+.- .+|++|.|+.||+|-+.+
T Consensus 192 aVyca~fDrtg~~Iitgsdd~lvKiwS~et-~~~lAs~rGhs~ditd----lavs~~n~---~iaaaS~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 192 AVYCAIFDRTGRYIITGSDDRLVKIWSMET-ARCLASCRGHSGDITD----LAVSSNNT---MIAAASNDKVIRVWRLPD 263 (1113)
T ss_pred heeeeeeccccceEeecCccceeeeeeccc-hhhhccCCCCccccch----hccchhhh---hhhhcccCceEEEEecCC
Confidence 68888887 88999999999999999887 4 6778889887653 23333322 378999999999999999
Q ss_pred CcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEcCCcEEEEECCCCceEEE---EeeccCCeEEEE--EEe
Q 046773 270 EEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSSRVITFDLRNQGMVLG---ERGYGRGLYVTS--VDV 344 (453)
Q Consensus 270 g~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~---~~g~~~~~~v~~--~~~ 344 (453)
+..+ ..|++|++.|.+++|+|.. +++.|+|+++||.+=--.+.. ... .....+.+ |..
T Consensus 264 ~~pv--------------svLrghtgavtaiafsP~~--sss~dgt~~~wd~r~~~~~y~prp~~~-~~~~~~~s~~~~~ 326 (1113)
T KOG0644|consen 264 GAPV--------------SVLRGHTGAVTAIAFSPRA--SSSDDGTCRIWDARLEPRIYVPRPLKF-TEKDLVDSILFEN 326 (1113)
T ss_pred CchH--------------HHHhccccceeeeccCccc--cCCCCCceEeccccccccccCCCCCCc-ccccceeeeeccc
Confidence 8732 2378999999999999964 556789999999881111100 111 11122333 333
Q ss_pred cCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCC-eEEEEeC-CeEEEEECCCCeEEEEecc
Q 046773 345 NAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQG-YALMCVE-GVIRVWEVEGGEYMYSFRE 422 (453)
Q Consensus 345 ~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~-~lls~s~-~tIrlWD~~tG~~l~tL~g 422 (453)
.+...++++.|+ ..+.|..+.- ..+...+.-+.++.+.. +.+++-. ..+.+|++.+|..++.+.|
T Consensus 327 ~~~~f~Tgs~d~-------ea~n~e~~~l------~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~g 393 (1113)
T KOG0644|consen 327 NGDRFLTGSRDG-------EARNHEFEQL------AWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMG 393 (1113)
T ss_pred cccccccccCCc-------ccccchhhHh------hhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcc
Confidence 455667777777 6666654421 12222222222222211 2222222 6789999999999999999
Q ss_pred cCCceEE--EEec-CCCEEEEE-eCCcEEEEecC
Q 046773 423 RIGEEVI--AFVG-DDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 423 h~~~~V~--a~s~-d~~~lasg-~D~~IklWDl~ 452 (453)
|.++ +. .+.| +.++.-++ .||++.|||+-
T Consensus 394 hsd~-~yvLd~Hpfn~ri~msag~dgst~iwdi~ 426 (1113)
T KOG0644|consen 394 HSDE-VYVLDVHPFNPRIAMSAGYDGSTIIWDIW 426 (1113)
T ss_pred cccc-eeeeeecCCCcHhhhhccCCCceEeeecc
Confidence 9988 66 5566 55554577 99999999973
No 159
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.48 E-value=2.9e-13 Score=133.45 Aligned_cols=156 Identities=18% Similarity=0.210 Sum_probs=113.4
Q ss_pred CCCCCCCCeEEEEEEecC---CEEEEEeCCCcEEEEECCCCeE---EEEecCCCCCccccccceEEEEEEcC---CeEEE
Q 046773 137 SDVDNPDGLTCRCLTLSD---LYLACGFADGAVRLFDLTTRLH---VRTFRPQHSDRLGQFSRAVSGIIITD---SQLIF 207 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~---~~LaSGS~D~TIrlWD~~tg~~---~~tl~gh~~~~~~~~s~~V~~i~f~g---~~Las 207 (453)
+||.. . -|.|.||+ -.|+||---+.|++|...+|.- -+.|.+|. .+|..|+.++ ..++|
T Consensus 208 ~ghk~--E--Gy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~--------~SVEDLqWSptE~~vfaS 275 (440)
T KOG0302|consen 208 NGHKG--E--GYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHT--------KSVEDLQWSPTEDGVFAS 275 (440)
T ss_pred cccCc--c--ceeeecccccccccccCccccceEeeeeccCceeecCccccccc--------cchhhhccCCccCceEEe
Confidence 48872 2 48999998 2578887779999999999863 24455654 3788898864 57999
Q ss_pred EeCCCCEEEEEeecCCc--ce--EEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcc
Q 046773 208 ATLDGDIHVAVIDDVAN--ET--RTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNT 283 (453)
Q Consensus 208 gS~D~tIkvWd~~~~g~--~~--~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~ 283 (453)
||+|++|+|||+.. +. .+ .+.|.+.|+ .|.|+.+-. .||||+.|+|++|||++.=+. + .|
T Consensus 276 cS~DgsIrIWDiRs-~~~~~~~~~kAh~sDVN----VISWnr~~~---lLasG~DdGt~~iwDLR~~~~--~----~p-- 339 (440)
T KOG0302|consen 276 CSCDGSIRIWDIRS-GPKKAAVSTKAHNSDVN----VISWNRREP---LLASGGDDGTLSIWDLRQFKS--G----QP-- 339 (440)
T ss_pred eecCceEEEEEecC-CCccceeEeeccCCcee----eEEccCCcc---eeeecCCCceEEEEEhhhccC--C----Cc--
Confidence 99999999999987 41 11 244555543 577876643 499999999999999986330 0 00
Q ss_pred eeeeeeeeeeccceeEEEEcCCc--e-EEEEcCCcEEEEECCC
Q 046773 284 VMGWRMLTEFTEFVGRVRVTSHE--S-AVACTSSRVITFDLRN 323 (453)
Q Consensus 284 v~~w~~l~~h~~~v~~v~~s~~~--~-~vas~d~tIrlWDl~t 323 (453)
-.++.-|..+|.+|.++|.. . ++++.|..|.||||..
T Consensus 340 ---VA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 340 ---VATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred ---ceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 02456788999999999754 3 4445678999999975
No 160
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=4.7e-12 Score=122.62 Aligned_cols=226 Identities=15% Similarity=0.233 Sum_probs=156.8
Q ss_pred EEEEEc--CCeEEEEeCCCCEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcE
Q 046773 196 SGIIIT--DSQLIFATLDGDIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEV 272 (453)
Q Consensus 196 ~~i~f~--g~~LasgS~D~tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~ 272 (453)
.++.|+ |..||.|..||.|-+||..+.+ .+++.+|.-.+. ++..|+|||. |.++|.|..|++||+..|.+
T Consensus 27 ~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~----sl~WS~dgr~---LltsS~D~si~lwDl~~gs~ 99 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPIT----SLCWSRDGRK---LLTSSRDWSIKLWDLLKGSP 99 (405)
T ss_pred ceEEeccCcceeeeeccCCcEEEEEccccchhhhhhcccccee----EEEecCCCCE---eeeecCCceeEEEeccCCCc
Confidence 346676 8999999999999999998844 356667766553 5899999997 78999999999999999984
Q ss_pred EecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEEc-CCcEEEEECCCC--ceEEEEeeccCCeEEEE---EEe
Q 046773 273 FVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACT-SSRVITFDLRNQ--GMVLGERGYGRGLYVTS---VDV 344 (453)
Q Consensus 273 ~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~-d~tIrlWDl~t~--~~~~~~~g~~~~~~v~~---~~~ 344 (453)
+.- .-+.++|..++++|+. .++++- +..-.|=++..+ .++-.. ..+.-+.+.+ |+.
T Consensus 100 l~r---------------irf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d-~d~dln~sas~~~fdr 163 (405)
T KOG1273|consen 100 LKR---------------IRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKD-DDGDLNSSASHGVFDR 163 (405)
T ss_pred eeE---------------EEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCC-CccccccccccccccC
Confidence 321 1245788888888754 566652 322223333322 222111 1122222333 888
Q ss_pred cCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecC-CCeeEEEEeeCCCeEEEE-eCCeEEEEECCC----C----
Q 046773 345 NAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRA-DRNVNVMGCMNQGYALMC-VEGVIRVWEVEG----G---- 414 (453)
Q Consensus 345 ~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~-~~v~~~~~~~~~~~lls~-s~~tIrlWD~~t----G---- 414 (453)
.|+.+++|.+-| -+-|.+.+|-+|+..+.... ..++.+.++..++.++.- ++++||.++++. |
T Consensus 164 ~g~yIitGtsKG-------kllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e 236 (405)
T KOG1273|consen 164 RGKYIITGTSKG-------KLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGE 236 (405)
T ss_pred CCCEEEEecCcc-------eEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCC
Confidence 899999999999 99999999999998887655 568888888899888864 459999999873 1
Q ss_pred -eEEEEecccCCceEE---EEecCCCEEEEE--eCCcEEEEec
Q 046773 415 -EYMYSFRERIGEEVI---AFVGDDRHVAAS--CGTNIHLWDF 451 (453)
Q Consensus 415 -~~l~tL~gh~~~~V~---a~s~d~~~lasg--~D~~IklWDl 451 (453)
+..+.|..-.+..-| +|+.||.+|+.+ .-..+.||.-
T Consensus 237 ~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~ 279 (405)
T KOG1273|consen 237 VEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEK 279 (405)
T ss_pred cChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEec
Confidence 111222111111012 788999998765 6778999974
No 161
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=3.9e-12 Score=133.23 Aligned_cols=229 Identities=10% Similarity=0.071 Sum_probs=143.4
Q ss_pred eCCCcEEEEECCCCeEEEEecCCCCCccccccceEEE--EEEcCCeEEEEeCCC---CEEEEEeecCC-cceEEeeecce
Q 046773 161 FADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSG--IIITDSQLIFATLDG---DIHVAVIDDVA-NETRTAHFGSV 234 (453)
Q Consensus 161 S~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~--i~f~g~~LasgS~D~---tIkvWd~~~~g-~~~~~~~~~~v 234 (453)
+++.+|.|||..... .+++..|.. .+.. ++++|++|++.|.+. +|++||+.+ | ...+....+..
T Consensus 181 ~~~~~i~i~d~dg~~-~~~lt~~~~--------~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~t-g~~~~l~~~~g~~ 250 (429)
T PRK01742 181 SQPYEVRVADYDGFN-QFIVNRSSQ--------PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRS-GARKVVASFRGHN 250 (429)
T ss_pred CceEEEEEECCCCCC-ceEeccCCC--------ccccceEcCCCCEEEEEEecCCCcEEEEEeCCC-CceEEEecCCCcc
Confidence 456899999986554 667765443 2333 345688999988653 599999977 4 22222111211
Q ss_pred ecCceEEEEeCCCceeeEEEEeeCCCeEEEe--eCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEE
Q 046773 235 MDDGVLIDFTGCSRYWVGLYAGLAGRAFHIW--DRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVA 310 (453)
Q Consensus 235 ~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvW--D~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~va 310 (453)
..++|+|||+++ +++.+.|+.++|| |+.+++.. .++.+...+..+.|+|++. +.+
T Consensus 251 ----~~~~wSPDG~~L--a~~~~~~g~~~Iy~~d~~~~~~~---------------~lt~~~~~~~~~~wSpDG~~i~f~ 309 (429)
T PRK01742 251 ----GAPAFSPDGSRL--AFASSKDGVLNIYVMGANGGTPS---------------QLTSGAGNNTEPSWSPDGQSILFT 309 (429)
T ss_pred ----CceeECCCCCEE--EEEEecCCcEEEEEEECCCCCeE---------------eeccCCCCcCCEEECCCCCEEEEE
Confidence 137999999973 2344567776666 66666521 2334444566788998874 333
Q ss_pred Ec-CCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEE
Q 046773 311 CT-SSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNV 389 (453)
Q Consensus 311 s~-d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~ 389 (453)
+. ++..+||++...+.......+.. ...+++|+|+.++.++.++ .+ +||+.+++... +... ......
T Consensus 310 s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~~~-------i~-~~Dl~~g~~~~-lt~~-~~~~~~ 377 (429)
T PRK01742 310 SDRSGSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMINGDN-------VV-KQDLTSGSTEV-LSST-FLDESP 377 (429)
T ss_pred ECCCCCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcCCC-------EE-EEECCCCCeEE-ecCC-CCCCCc
Confidence 43 46788888754322122212221 3356889999988876654 44 48888886542 2211 123456
Q ss_pred EEeeCCCeEEEEeC-CeEEEEEC--CCCeEEEEecccCCceEE--EEec
Q 046773 390 MGCMNQGYALMCVE-GVIRVWEV--EGGEYMYSFRERIGEEVI--AFVG 433 (453)
Q Consensus 390 ~~~~~~~~lls~s~-~tIrlWD~--~tG~~l~tL~gh~~~~V~--a~s~ 433 (453)
.++|++++++.++. +.+++|++ .+|++++.|.+|.+. +. +++|
T Consensus 378 ~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~-~~~p~wsp 425 (429)
T PRK01742 378 SISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQ-VKFPAWSP 425 (429)
T ss_pred eECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCC-CCCcccCC
Confidence 78999999887776 77788876 469999999888776 55 4554
No 162
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.45 E-value=1.2e-12 Score=128.58 Aligned_cols=236 Identities=14% Similarity=0.136 Sum_probs=154.9
Q ss_pred EEEEEecCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCC-cc
Q 046773 147 CRCLTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVA-NE 225 (453)
Q Consensus 147 v~~lafs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g-~~ 225 (453)
|..+.++...++|.+.|+|||.|-++- ..++|+-|.. .+.+|...-..-+++++...|-|||.+..- ++
T Consensus 112 V~Gi~v~~~~~~tvgdDKtvK~wk~~~-~p~~tilg~s---------~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~ 181 (433)
T KOG0268|consen 112 VRGICVTQTSFFTVGDDKTVKQWKIDG-PPLHTILGKS---------VYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVS 181 (433)
T ss_pred eeeEEecccceEEecCCcceeeeeccC-Ccceeeeccc---------cccccccccccccccccCceeeecccccCCccc
Confidence 788888888899999999999999876 4677775422 223333221122344556678999986411 12
Q ss_pred eEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCC
Q 046773 226 TRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSH 305 (453)
Q Consensus 226 ~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~ 305 (453)
.+..-...+ ..+.|+|--.. .|+++..|++|-|+|++++..+. . + -.+-.-|.++++|.
T Consensus 182 smswG~Dti----~svkfNpvETs--ILas~~sDrsIvLyD~R~~~Pl~-------K-V-------i~~mRTN~IswnPe 240 (433)
T KOG0268|consen 182 SMSWGADSI----SSVKFNPVETS--ILASCASDRSIVLYDLRQASPLK-------K-V-------ILTMRTNTICWNPE 240 (433)
T ss_pred eeecCCCce----eEEecCCCcch--heeeeccCCceEEEecccCCccc-------e-e-------eeeccccceecCcc
Confidence 222111111 24788887654 48999999999999999987321 0 0 01233467888885
Q ss_pred c--eEEEEcCCcEEEEECCCCceEEE-EeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEE-Ee
Q 046773 306 E--SAVACTSSRVITFDLRNQGMVLG-ERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRF-SL 381 (453)
Q Consensus 306 ~--~~vas~d~tIrlWDl~t~~~~~~-~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l-~~ 381 (453)
. .++|+-|..+..+|++.-..... ..+|+..+.-..|+|.|.-+++||.|. +|||+.++.+..-... +-
T Consensus 241 afnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDk-------sIRIf~~~~~~SRdiYhtk 313 (433)
T KOG0268|consen 241 AFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDK-------SIRIFPVNHGHSRDIYHTK 313 (433)
T ss_pred ccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccc-------eEEEeecCCCcchhhhhHh
Confidence 4 34456678899999987543322 256654444444566678899999999 9999998866321110 00
Q ss_pred cCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEe
Q 046773 382 RADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSF 420 (453)
Q Consensus 382 ~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL 420 (453)
+=..|..+.++.|.+|++++|+ +.||||-....+.+..+
T Consensus 314 RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~ 353 (433)
T KOG0268|consen 314 RMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVI 353 (433)
T ss_pred hhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCCC
Confidence 1133678889999999999999 99999988765554433
No 163
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.43 E-value=2.2e-11 Score=118.52 Aligned_cols=277 Identities=13% Similarity=0.147 Sum_probs=171.2
Q ss_pred CCCCCCCeEEEEEEecC-------CEEEEEeCCCcEEEEECCCCeEEEEe---cCC-CCCccccccceEEEEE--Ec---
Q 046773 138 DVDNPDGLTCRCLTLSD-------LYLACGFADGAVRLFDLTTRLHVRTF---RPQ-HSDRLGQFSRAVSGII--IT--- 201 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~-------~~LaSGS~D~TIrlWD~~tg~~~~tl---~gh-~~~~~~~~s~~V~~i~--f~--- 201 (453)
+|..+ ++.+||+. ..+||.+ -+++-|+....---++-| ... +.+ ..-.++ .+
T Consensus 36 d~~~~----I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~E-------sfytcsw~yd~~~ 103 (385)
T KOG1034|consen 36 DHNKP----IFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDE-------SFYTCSWSYDSNT 103 (385)
T ss_pred cCCCc----cceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCc-------ceEEEEEEecCCC
Confidence 67645 78999973 3556555 457788876443323333 211 111 111122 22
Q ss_pred -CCeEEEEeCCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccc
Q 046773 202 -DSQLIFATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDL 278 (453)
Q Consensus 202 -g~~LasgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l 278 (453)
+-.||.|+.=|.|||-|+.+ + ..-+++|.+.+. .+-|.|+--. .|.|+|.|.+|||||+++..++.-
T Consensus 104 ~~p~la~~G~~GvIrVid~~~-~~~~~~~~ghG~sIN----eik~~p~~~q--lvls~SkD~svRlwnI~~~~Cv~V--- 173 (385)
T KOG1034|consen 104 GNPFLAAGGYLGVIRVIDVVS-GQCSKNYRGHGGSIN----EIKFHPDRPQ--LVLSASKDHSVRLWNIQTDVCVAV--- 173 (385)
T ss_pred CCeeEEeecceeEEEEEecch-hhhccceeccCccch----hhhcCCCCCc--EEEEecCCceEEEEeccCCeEEEE---
Confidence 34678888889999999877 4 456778877664 3788888543 478999999999999999884310
Q ss_pred cCCcceeeeeeeeeeccceeEEEEcCCceEEE--EcCCcEEEEECCCCce------EE------------------EE--
Q 046773 279 TDHNTVMGWRMLTEFTEFVGRVRVTSHESAVA--CTSSRVITFDLRNQGM------VL------------------GE-- 330 (453)
Q Consensus 279 ~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~va--s~d~tIrlWDl~t~~~------~~------------------~~-- 330 (453)
.--+.||.+.|.+|-|++++..++ +.|.++++|+|...+. .. ..
T Consensus 174 --------fGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fs 245 (385)
T KOG1034|consen 174 --------FGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFS 245 (385)
T ss_pred --------ecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccc
Confidence 012568999999999998775444 4578999999984321 10 00
Q ss_pred eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEc-CCCeeEE-------------EEEecCCCeeEEEEeeC--
Q 046773 331 RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRV-DTFEEVC-------------RFSLRADRNVNVMGCMN-- 394 (453)
Q Consensus 331 ~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~-~tg~~v~-------------~l~~~~~~v~~~~~~~~-- 394 (453)
.---|.++|-|+.+-|+.++|-|-++ .|-.|.. .-.+.+. ++....-.+--+.|..|
T Consensus 246 t~diHrnyVDCvrw~gd~ilSkscen-------aI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~ 318 (385)
T KOG1034|consen 246 TTDIHRNYVDCVRWFGDFILSKSCEN-------AIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPW 318 (385)
T ss_pred ccccccchHHHHHHHhhheeecccCc-------eEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHH
Confidence 01123455666666788888877777 8888865 2122111 11111111112223333
Q ss_pred CCeEEEEeC-CeEEEEECCCCeE--EEEecccC-CceEE--EEecCCCEEEEE-eCCcEEEEec
Q 046773 395 QGYALMCVE-GVIRVWEVEGGEY--MYSFRERI-GEEVI--AFVGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 395 ~~~lls~s~-~tIrlWD~~tG~~--l~tL~gh~-~~~V~--a~s~d~~~lasg-~D~~IklWDl 451 (453)
.+.++.+.. |.|.+||+...+. ..||.-+. +..|. +|+-|+.+|+.- +|++|-=||-
T Consensus 319 ~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 319 QKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred HHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 344444444 9999999987644 33443332 23355 788999999887 9999999984
No 164
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=7.6e-13 Score=145.29 Aligned_cols=238 Identities=17% Similarity=0.184 Sum_probs=156.6
Q ss_pred EEEEEecC--C----EEEEEeCCCcEEEEECCC---Ce---EEEEecCCCCCccccccceEEEEEEc---CCeEEEEeCC
Q 046773 147 CRCLTLSD--L----YLACGFADGAVRLFDLTT---RL---HVRTFRPQHSDRLGQFSRAVSGIIIT---DSQLIFATLD 211 (453)
Q Consensus 147 v~~lafs~--~----~LaSGS~D~TIrlWD~~t---g~---~~~tl~gh~~~~~~~~s~~V~~i~f~---g~~LasgS~D 211 (453)
.++|++.. + +||.|..||+|-+||... +. .+.++.-|++ .|.++.|+ +..||||+.|
T Consensus 67 F~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G--------~V~gLDfN~~q~nlLASGa~~ 138 (1049)
T KOG0307|consen 67 FNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTG--------PVLGLDFNPFQGNLLASGADD 138 (1049)
T ss_pred ceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCC--------ceeeeeccccCCceeeccCCC
Confidence 45566542 2 599999999999999866 32 3555665554 68888875 6689999999
Q ss_pred CCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc-EEecccccCCcceeeeeee
Q 046773 212 GDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE-VFVGGDLTDHNTVMGWRML 290 (453)
Q Consensus 212 ~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~-~~~g~~l~~~~~v~~w~~l 290 (453)
+.|.|||++..- .++.--......+-..|+..-.=+ -.|||++.++.+-|||++..+ .+. +.+.
T Consensus 139 geI~iWDlnn~~-tP~~~~~~~~~~eI~~lsWNrkvq--hILAS~s~sg~~~iWDlr~~~pii~---ls~~--------- 203 (1049)
T KOG0307|consen 139 GEILIWDLNKPE-TPFTPGSQAPPSEIKCLSWNRKVS--HILASGSPSGRAVIWDLRKKKPIIK---LSDT--------- 203 (1049)
T ss_pred CcEEEeccCCcC-CCCCCCCCCCcccceEeccchhhh--HHhhccCCCCCceeccccCCCcccc---cccC---------
Confidence 999999997622 111100000111112244333212 148999999999999999876 221 0000
Q ss_pred eeeccceeEEEEcCCc---eEEEEcCC---cEEEEECCCCceEEE-EeeccCCeEEEEEEecC-CEEEEEeCCCccccCc
Q 046773 291 TEFTEFVGRVRVTSHE---SAVACTSS---RVITFDLRNQGMVLG-ERGYGRGLYVTSVDVNA-EAYIVVENRELENQNR 362 (453)
Q Consensus 291 ~~h~~~v~~v~~s~~~---~~vas~d~---tIrlWDl~t~~~~~~-~~g~~~~~~v~~~~~~g-~~l~s~s~dg~~~~~~ 362 (453)
+-...++.|+++|+. +++++.|+ .|.+||++.-....+ +++|..++...+..+.+ +.+++..-|+
T Consensus 204 -~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~------ 276 (1049)
T KOG0307|consen 204 -PGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDN------ 276 (1049)
T ss_pred -CCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCC------
Confidence 001235567788764 56777653 699999986543333 36676665444444444 4566666677
Q ss_pred ceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC--CeEEEEECCCCe
Q 046773 363 RLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE--GVIRVWEVEGGE 415 (453)
Q Consensus 363 ~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~--~tIrlWD~~tG~ 415 (453)
.|-+|+.+|+|-+.++....+|.+.+.||+-.-.+++++. |.|.|..+.++.
T Consensus 277 -~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 277 -RIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred -CeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9999999999999999888899999999984433444444 999999988653
No 165
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=2.3e-11 Score=132.54 Aligned_cols=272 Identities=14% Similarity=0.143 Sum_probs=157.0
Q ss_pred EEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE----cCCeEEEEeCCCCEEEEEeecCC
Q 046773 150 LTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII----TDSQLIFATLDGDIHVAVIDDVA 223 (453)
Q Consensus 150 lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f----~g~~LasgS~D~tIkvWd~~~~g 223 (453)
+.|.+ +.|+++-.-.+|+|||-+.++++.-|..+. +....|+.+.+ |...|.+||.||.||||.-...+
T Consensus 1070 ~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~-----~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1070 LKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGA-----FPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred eeecCCCceeEEcCCcceEEEEecccCceeccccCCC-----CCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 44444 456666556789999999999988886322 12235777775 34579999999999999632211
Q ss_pred ---------cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeec
Q 046773 224 ---------NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFT 294 (453)
Q Consensus 224 ---------~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~ 294 (453)
...+..+.-.-...+..++.-.+... |++++.=+.|||||+...++..- ++ .+-.
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~---Ll~tGd~r~IRIWDa~~E~~~~d--iP-----------~~s~ 1208 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGH---LLVTGDVRSIRIWDAHKEQVVAD--IP-----------YGSS 1208 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeehhhhCCe---EEecCCeeEEEEEecccceeEee--cc-----------cCCC
Confidence 11122211000111223444333222 44545568999999988774321 00 0111
Q ss_pred cceeEEEE---cCCceEEEEcCCcEEEEECCCCc--eEEE-EeeccCCeEEEE--EEecCC-EEEEEeCCCccccCcceE
Q 046773 295 EFVGRVRV---TSHESAVACTSSRVITFDLRNQG--MVLG-ERGYGRGLYVTS--VDVNAE-AYIVVENRELENQNRRLA 365 (453)
Q Consensus 295 ~~v~~v~~---s~~~~~vas~d~tIrlWDl~t~~--~~~~-~~g~~~~~~v~~--~~~~g~-~l~s~s~dg~~~~~~~~i 365 (453)
..|.++.- .++-++.+.+||.||++|.+... +... .+.|...-.|.. +...|- .++++|.+| .|
T Consensus 1209 t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G-------~I 1281 (1387)
T KOG1517|consen 1209 TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDG-------DI 1281 (1387)
T ss_pred ccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCC-------eE
Confidence 12222221 12224455689999999998752 2222 244544322444 445454 489999999 99
Q ss_pred EEEEcCCCeeEEEEEecC-----CCeeEEEEeeCCCeEEEEeCCeEEEEECCCCeEEEEecccC-------CceEE--EE
Q 046773 366 IVRRVDTFEEVCRFSLRA-----DRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYMYSFRERI-------GEEVI--AF 431 (453)
Q Consensus 366 ~Iw~~~tg~~v~~l~~~~-----~~v~~~~~~~~~~~lls~s~~tIrlWD~~tG~~l~tL~gh~-------~~~V~--a~ 431 (453)
++||+........++... +.+..+..+.+...+++++.+.|+|||+. |+.+..++-+. +. +. +|
T Consensus 1282 ~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs-~scL~F 1359 (1387)
T KOG1517|consen 1282 QLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLS-GEQLNIIKYNPGFMGQRIGS-VSCLAF 1359 (1387)
T ss_pred EEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEEEEecC-hhhhcccccCcccccCcCCC-cceeee
Confidence 999987632111111111 12555666666555554445999999986 66666554332 22 33 56
Q ss_pred ecCCCEEEEE-eCCcEEEEec
Q 046773 432 VGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 432 s~d~~~lasg-~D~~IklWDl 451 (453)
.|---.||.| .|.+|-|+-.
T Consensus 1360 HP~~~llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1360 HPHRLLLAAGSADSTVSIYSC 1380 (1387)
T ss_pred cchhHhhhhccCCceEEEeec
Confidence 6766678888 9999999853
No 166
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.40 E-value=6.9e-12 Score=126.39 Aligned_cols=203 Identities=12% Similarity=0.107 Sum_probs=135.9
Q ss_pred ceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcC
Q 046773 225 ETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTS 304 (453)
Q Consensus 225 ~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~ 304 (453)
+..+.+.+.+. .++|+|.-.. .++|+|+--++|-+||+.+.+.- -..+ .....|..+|+++.|+|
T Consensus 180 ~v~kv~~~Rit----~l~fHPt~~~-~lva~GdK~G~VG~Wn~~~~~~d-------~d~v---~~f~~hs~~Vs~l~F~P 244 (498)
T KOG4328|consen 180 NVAKVTDRRIT----SLAFHPTENR-KLVAVGDKGGQVGLWNFGTQEKD-------KDGV---YLFTPHSGPVSGLKFSP 244 (498)
T ss_pred ceeEecccceE----EEEecccCcc-eEEEEccCCCcEEEEecCCCCCc-------cCce---EEeccCCccccceEecC
Confidence 33444555543 4899998653 25889999999999999754410 0001 23457889999999997
Q ss_pred Cc---eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCC--EEEEEeCCCccccCcceEEEEEcCCCe-eEEE
Q 046773 305 HE---SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAE--AYIVVENRELENQNRRLAIVRRVDTFE-EVCR 378 (453)
Q Consensus 305 ~~---~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~--~l~s~s~dg~~~~~~~~i~Iw~~~tg~-~v~~ 378 (453)
.. ++++|.|+|||+=|++++.....+...........++++.+ .++.+..=| ...+||..++. +...
T Consensus 245 ~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G-------~f~~iD~R~~~s~~~~ 317 (498)
T KOG4328|consen 245 ANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG-------NFNVIDLRTDGSEYEN 317 (498)
T ss_pred CChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeeccc-------ceEEEEeecCCccchh
Confidence 54 56778899999999997632111111123334455555433 333344334 66889988753 3555
Q ss_pred EEecCCCeeEEEEeeCCC-eEEEEeC-CeEEEEECCC--CeE---EEEecccCCceEE--EEecCCCEEEEE-eCCcEEE
Q 046773 379 FSLRADRNVNVMGCMNQG-YALMCVE-GVIRVWEVEG--GEY---MYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHL 448 (453)
Q Consensus 379 l~~~~~~v~~~~~~~~~~-~lls~s~-~tIrlWD~~t--G~~---l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~Ikl 448 (453)
+..|.-.|.++++.|... ++++++- +|+||||+.. ++. |+++ .|.-. |+ .|||++-.|++. .|..|+|
T Consensus 318 ~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~-~Hrrs-V~sAyFSPs~gtl~TT~~D~~IRv 395 (498)
T KOG4328|consen 318 LRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTL-PHRRS-VNSAYFSPSGGTLLTTCQDNEIRV 395 (498)
T ss_pred hhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecc-cccce-eeeeEEcCCCCceEeeccCCceEE
Confidence 667777788888888544 4555555 9999999985 322 5665 47777 87 589988778887 9999999
Q ss_pred Eec
Q 046773 449 WDF 451 (453)
Q Consensus 449 WDl 451 (453)
||-
T Consensus 396 ~ds 398 (498)
T KOG4328|consen 396 FDS 398 (498)
T ss_pred eec
Confidence 996
No 167
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=2.8e-11 Score=118.33 Aligned_cols=259 Identities=14% Similarity=0.190 Sum_probs=159.4
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE----cCCeEEEEeCCCCEEEEEeecCCcceEE--
Q 046773 155 LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII----TDSQLIFATLDGDIHVAVIDDVANETRT-- 228 (453)
Q Consensus 155 ~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f----~g~~LasgS~D~tIkvWd~~~~g~~~~~-- 228 (453)
..+|++-..++|||+|..||+.++.|+++.. .+..+.| +++.+.|||.||+||+||+.+.+...+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~--------~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~ 112 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPA--------TTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISW 112 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCC--------cccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheec
Confidence 3588888899999999999999999998764 3444555 3568999999999999999874322211
Q ss_pred -eeecceecCceEEEEeC--CCceeeEEEEee----CCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEE
Q 046773 229 -AHFGSVMDDGVLIDFTG--CSRYWVGLYAGL----AGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVR 301 (453)
Q Consensus 229 -~~~~~v~~~~~~v~Fs~--dg~~~~~LaSgS----~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~ 301 (453)
.+.+.. .+.|+. +++. ++.|+ .|-.|-+||++..+.+.+ .....|.+-|.+|+
T Consensus 113 ~~~~~~~-----f~~ld~nck~~i---i~~GtE~~~s~A~v~lwDvR~~qq~l~------------~~~eSH~DDVT~lr 172 (376)
T KOG1188|consen 113 TQQSGTP-----FICLDLNCKKNI---IACGTELTRSDASVVLWDVRSEQQLLR------------QLNESHNDDVTQLR 172 (376)
T ss_pred cCCCCCc-----ceEeeccCcCCe---EEeccccccCceEEEEEEeccccchhh------------hhhhhccCcceeEE
Confidence 222111 133333 3332 55554 467899999998774221 11346788999999
Q ss_pred EcCC---ceEEEEcCCcEEEEECCCCce---EEEEeeccCCeEEEEEEecCC---EEEEEeCCCccccCcceEEEEEcCC
Q 046773 302 VTSH---ESAVACTSSRVITFDLRNQGM---VLGERGYGRGLYVTSVDVNAE---AYIVVENRELENQNRRLAIVRRVDT 372 (453)
Q Consensus 302 ~s~~---~~~vas~d~tIrlWDl~t~~~---~~~~~g~~~~~~v~~~~~~g~---~l~s~s~dg~~~~~~~~i~Iw~~~t 372 (453)
|+|. -++++|.|+-|-|+|++.... ++..--+ ...|-++.+.++ ++...+-.+ +..+|+++.
T Consensus 173 FHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~--~sSI~~igw~~~~ykrI~clTH~E-------tf~~~ele~ 243 (376)
T KOG1188|consen 173 FHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINH--GSSIHLIGWLSKKYKRIMCLTHME-------TFAIYELED 243 (376)
T ss_pred ecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcc--cceeeeeeeecCCcceEEEEEccC-------ceeEEEccC
Confidence 9864 467778899999999975421 1111111 223444444443 466667777 899999998
Q ss_pred CeeEEEEEec-----C----CCeeEEEE--eeCC-CeE-EEEeC-CeEEEE---ECCCC---eEEEEecccCCceEEEEe
Q 046773 373 FEEVCRFSLR-----A----DRNVNVMG--CMNQ-GYA-LMCVE-GVIRVW---EVEGG---EYMYSFRERIGEEVIAFV 432 (453)
Q Consensus 373 g~~v~~l~~~-----~----~~v~~~~~--~~~~-~~l-ls~s~-~tIrlW---D~~tG---~~l~tL~gh~~~~V~a~s 432 (453)
+.+...+.-. . +....++- +|.+ ... +.+.. ++..+. |..++ +.+..|.||....|.++.
T Consensus 244 ~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~ 323 (376)
T KOG1188|consen 244 GSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDIL 323 (376)
T ss_pred CChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHh
Confidence 7654332110 0 00111221 1211 222 33332 444444 44444 456677776555366655
Q ss_pred c--CCCEEEEE-eCCcEEEEe
Q 046773 433 G--DDRHVAAS-CGTNIHLWD 450 (453)
Q Consensus 433 ~--d~~~lasg-~D~~IklWD 450 (453)
. .+..+-|| +||.+.+|.
T Consensus 324 ~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 324 FDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred hhcccceeeccCCCceEEEEe
Confidence 4 44467788 999999997
No 168
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=6.4e-11 Score=117.43 Aligned_cols=269 Identities=11% Similarity=0.107 Sum_probs=163.5
Q ss_pred CCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCC------eEEEEecCCCCCccccccceEEEEEEc--CCeEEE
Q 046773 138 DVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTR------LHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIF 207 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg------~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~Las 207 (453)
||.-. |.+++||. .+||||+.|..++||+++.- +.+... +||. ..-|-+++|+ +++|.|
T Consensus 54 ~H~GC----iNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~-~~~H------~SNIF~L~F~~~N~~~~S 122 (609)
T KOG4227|consen 54 EHTGC----INALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVM-EHPH------RSNIFSLEFDLENRFLYS 122 (609)
T ss_pred hhccc----cceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceec-cCcc------ccceEEEEEccCCeeEec
Confidence 78733 78999985 69999999999999998644 444333 3332 1357789997 568999
Q ss_pred EeCCCCEEEEEeecCCcceEEe--ee---cceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc----EEecccc
Q 046773 208 ATLDGDIHVAVIDDVANETRTA--HF---GSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE----VFVGGDL 278 (453)
Q Consensus 208 gS~D~tIkvWd~~~~g~~~~~~--~~---~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~----~~~g~~l 278 (453)
|..|++|.+-|+++ - +++-+ |. +.|. .+..+|-.. .|++.+.|+-|-+||.+..+ .+.
T Consensus 123 G~~~~~VI~HDiEt-~-qsi~V~~~~~~~~~VY----~m~~~P~DN---~~~~~t~~~~V~~~D~Rd~~~~~~~~~---- 189 (609)
T KOG4227|consen 123 GERWGTVIKHDIET-K-QSIYVANENNNRGDVY----HMDQHPTDN---TLIVVTRAKLVSFIDNRDRQNPISLVL---- 189 (609)
T ss_pred CCCcceeEeeeccc-c-eeeeeecccCccccee----ecccCCCCc---eEEEEecCceEEEEeccCCCCCCceee----
Confidence 99999999999987 2 33332 21 1222 255566643 48889999999999998755 211
Q ss_pred cCCcceeeeeeeeeeccceeEEEEcCCc---eEEEEcCCcEEEEECCCCceEE-EE---eeccCCe---EEEEEEecCCE
Q 046773 279 TDHNTVMGWRMLTEFTEFVGRVRVTSHE---SAVACTSSRVITFDLRNQGMVL-GE---RGYGRGL---YVTSVDVNAEA 348 (453)
Q Consensus 279 ~~~~~v~~w~~l~~h~~~v~~v~~s~~~---~~vas~d~tIrlWDl~t~~~~~-~~---~g~~~~~---~v~~~~~~g~~ 348 (453)
+......-..+.|+|.+ +++++..+.+-|||.+..+..+ +. .+-.+.. .-.-++++|+.
T Consensus 190 -----------~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q 258 (609)
T KOG4227|consen 190 -----------PANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQ 258 (609)
T ss_pred -----------ecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCe
Confidence 11111233456777644 4555666789999998754321 11 1111111 11236777777
Q ss_pred EEEEeCCCccccCcceEEEEEcCCCee-EEEEEecCCC------eeEEEEeeCCCeEEEEeC-CeEEEEECCC-------
Q 046773 349 YIVVENRELENQNRRLAIVRRVDTFEE-VCRFSLRADR------NVNVMGCMNQGYALMCVE-GVIRVWEVEG------- 413 (453)
Q Consensus 349 l~s~s~dg~~~~~~~~i~Iw~~~tg~~-v~~l~~~~~~------v~~~~~~~~~~~lls~s~-~tIrlWD~~t------- 413 (453)
+++.-... ---++|+-.-.| +..+.-++++ +.++.|. ++..++++++ =.|.+|-+..
T Consensus 259 ~msiRR~~-------~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~-~D~~v~tGSD~~~i~~WklP~~~ds~G~ 330 (609)
T KOG4227|consen 259 FMSIRRGK-------CPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFI-DDYTVATGSDHWGIHIWKLPRANDSYGF 330 (609)
T ss_pred ehhhhccC-------CCEEeeeecccceeEeccCCCCcceeeeeeeeeeee-cceeeeccCcccceEEEecCCCccccCc
Confidence 65533222 122334433111 1111112222 2233332 3344667777 6799997642
Q ss_pred ---C-------------eEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEe
Q 046773 414 ---G-------------EYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWD 450 (453)
Q Consensus 414 ---G-------------~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWD 450 (453)
| +.+..|+||... ++ .|+|-...|+|+ -.+.+|||.
T Consensus 331 ~~IG~~~~~~~~~~~i~~~~~VLrGHRSv-~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 331 TQIGHDEEEMPSEIFIEKELTVLRGHRSV-PNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred cccCcchhhCchhheecceeEEEeccccc-ccceeecCCcceEeccchhhheeccc
Confidence 1 236678999877 77 677888888887 899999994
No 169
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.35 E-value=6.4e-11 Score=120.42 Aligned_cols=256 Identities=12% Similarity=0.134 Sum_probs=157.6
Q ss_pred CCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCC-eEEEEeC--CCCEEEEEeecC-C-cceEEeeecceecC
Q 046773 163 DGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDS-QLIFATL--DGDIHVAVIDDV-A-NETRTAHFGSVMDD 237 (453)
Q Consensus 163 D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~-~LasgS~--D~tIkvWd~~~~-g-~~~~~~~~~~v~~~ 237 (453)
-.++||||+..-+..-.+..|+.+ . .+..|..+-+ .|+.+|+ |+.|++|.-+.+ + +...+-.++. .
T Consensus 11 gd~~kl~D~s~~~~~~~~~~~t~~-p-----g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd---~ 81 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYVHQTAE-P-----GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD---N 81 (673)
T ss_pred CCceEEeecccccCccccccCCCC-C-----cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc---h
Confidence 347999998766544444433322 1 2445555533 3666665 666777765431 1 1222222222 1
Q ss_pred ceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCC-ce-EEEEcCCc
Q 046773 238 GVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSH-ES-AVACTSSR 315 (453)
Q Consensus 238 ~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~-~~-~vas~d~t 315 (453)
.-.|+....+.+ ++||+-.++|+|||++.+.+. +.|.+|.+.|.+|.+.-. .. ++++..+.
T Consensus 82 ~~Cv~~~s~S~y---~~sgG~~~~Vkiwdl~~kl~h--------------r~lkdh~stvt~v~YN~~DeyiAsvs~gGd 144 (673)
T KOG4378|consen 82 AFCVACASQSLY---EISGGQSGCVKIWDLRAKLIH--------------RFLKDHQSTVTYVDYNNTDEYIASVSDGGD 144 (673)
T ss_pred HHHHhhhhccee---eeccCcCceeeehhhHHHHHh--------------hhccCCcceeEEEEecCCcceeEEeccCCc
Confidence 111232233343 789999999999999966542 347789999999999743 33 33345578
Q ss_pred EEEEECCCCceEEEEe-eccCCeEEEEEEecCC-EEEEEeCCCccccCcceEEEEEcCCCeeEEEE-EecCCCeeEEEEe
Q 046773 316 VITFDLRNQGMVLGER-GYGRGLYVTSVDVNAE-AYIVVENRELENQNRRLAIVRRVDTFEEVCRF-SLRADRNVNVMGC 392 (453)
Q Consensus 316 IrlWDl~t~~~~~~~~-g~~~~~~v~~~~~~g~-~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l-~~~~~~v~~~~~~ 392 (453)
|-|-.+.|+....++. +.++.+...-++++-. .|.++|.+| ++.+||+..-.++..+ ..|..--+.+.||
T Consensus 145 iiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G-------~VtlwDv~g~sp~~~~~~~HsAP~~gicfs 217 (673)
T KOG4378|consen 145 IIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKG-------AVTLWDVQGMSPIFHASEAHSAPCRGICFS 217 (673)
T ss_pred EEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCC-------eEEEEeccCCCcccchhhhccCCcCcceec
Confidence 9999999986543332 2222222334455444 467788899 9999999865444332 2233224567888
Q ss_pred eCCCeEEEEeC--CeEEEEECCCCeEEEEecc-cCCceEEEEecCCCEEEEE-eCCcEEEEecC
Q 046773 393 MNQGYALMCVE--GVIRVWEVEGGEYMYSFRE-RIGEEVIAFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 393 ~~~~~lls~s~--~tIrlWD~~tG~~l~tL~g-h~~~~V~a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
|....++++-+ +.|.++|+.+.+...+|.- |.=. -.+|.++|.+|+.| .-|.|.-+|+.
T Consensus 218 psne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Pls-tvaf~~~G~~L~aG~s~G~~i~YD~R 280 (673)
T KOG4378|consen 218 PSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLS-TVAFSECGTYLCAGNSKGELIAYDMR 280 (673)
T ss_pred CCccceEEEecccceEEEeecccccccceeeecCCcc-eeeecCCceEEEeecCCceEEEEecc
Confidence 86555554433 9999999987665555532 2212 23889999999999 99999999974
No 170
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=8e-11 Score=110.75 Aligned_cols=193 Identities=11% Similarity=0.130 Sum_probs=139.0
Q ss_pred EEeCCCceeeEEEEeeCCCeEEEeeCCC---CcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEcCCcEEE
Q 046773 242 DFTGCSRYWVGLYAGLAGRAFHIWDRQA---EEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSSRVIT 318 (453)
Q Consensus 242 ~Fs~dg~~~~~LaSgS~D~tIrvWD~~t---g~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~d~tIrl 318 (453)
+.+|.+++ |+.|+.+++|-+..+++ +.... +.. .-.-+.++|..+++.++|..+ .+++++|+.|+=
T Consensus 17 a~sp~~~~---l~agn~~G~iav~sl~sl~s~sa~~------~gk-~~iv~eqahdgpiy~~~f~d~-~Lls~gdG~V~g 85 (325)
T KOG0649|consen 17 AISPSKQY---LFAGNLFGDIAVLSLKSLDSGSAEP------PGK-LKIVPEQAHDGPIYYLAFHDD-FLLSGGDGLVYG 85 (325)
T ss_pred hhCCcceE---EEEecCCCeEEEEEehhhhccccCC------CCC-cceeeccccCCCeeeeeeehh-heeeccCceEEE
Confidence 56788886 88999999999998764 22110 000 001234789999999999954 556677799997
Q ss_pred EECCCC----ce--EEEE--eecc-----CCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCC
Q 046773 319 FDLRNQ----GM--VLGE--RGYG-----RGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADR 385 (453)
Q Consensus 319 WDl~t~----~~--~~~~--~g~~-----~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~ 385 (453)
|--+.. .| +... .-|. ..+....++|+.+.++.+.+|+ .+.-||+++|+-.+++.+|.+-
T Consensus 86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~-------~~y~~dlE~G~i~r~~rGHtDY 158 (325)
T KOG0649|consen 86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDG-------VIYQVDLEDGRIQREYRGHTDY 158 (325)
T ss_pred eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCe-------EEEEEEecCCEEEEEEcCCcce
Confidence 754321 11 1111 1122 1222344677778888888999 9999999999999999999998
Q ss_pred eeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecc---------cCCceEEEEecCCCEEEEEeCCcEEEEecC
Q 046773 386 NVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRE---------RIGEEVIAFVGDDRHVAASCGTNIHLWDFG 452 (453)
Q Consensus 386 v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~g---------h~~~~V~a~s~d~~~lasg~D~~IklWDl~ 452 (453)
+.+++.-.....+++++. ||+||||++|++|..+++. |-+.+|-++.-+..+|++|....+-||.+.
T Consensus 159 vH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLr 235 (325)
T KOG0649|consen 159 VHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLR 235 (325)
T ss_pred eeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEEecc
Confidence 888887445567788887 9999999999999988742 334446688899999999977889999875
No 171
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=5.2e-12 Score=138.80 Aligned_cols=225 Identities=15% Similarity=0.174 Sum_probs=156.4
Q ss_pred eEEEEeCCCCEEEEEeecC--C-----cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcE-Eec
Q 046773 204 QLIFATLDGDIHVAVIDDV--A-----NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEV-FVG 275 (453)
Q Consensus 204 ~LasgS~D~tIkvWd~~~~--g-----~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~-~~g 275 (453)
.||.|..||.|-+||...- + +.++..|.|.|. .++|++... +.||||+.|+.|-|||++.-++ +.-
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~----gLDfN~~q~--nlLASGa~~geI~iWDlnn~~tP~~~ 155 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVL----GLDFNPFQG--NLLASGADDGEILIWDLNKPETPFTP 155 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchHHHhhhcccCCcee----eeeccccCC--ceeeccCCCCcEEEeccCCcCCCCCC
Confidence 3777888999999997651 1 456777888875 389999976 2499999999999999987542 110
Q ss_pred ccccCCcceeeeeeeeeeccceeEEEEcCC---ceEEEEcCCcEEEEECCCCceEEEEeeccCC--eEEEEEEecCC-EE
Q 046773 276 GDLTDHNTVMGWRMLTEFTEFVGRVRVTSH---ESAVACTSSRVITFDLRNQGMVLGERGYGRG--LYVTSVDVNAE-AY 349 (453)
Q Consensus 276 ~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~---~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~--~~v~~~~~~g~-~l 349 (453)
++ ....+.|.+|+.+-. =+++++.++++-||||+..+.++.+..+... ..+.+.+|++. .+
T Consensus 156 ~~-------------~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql 222 (1049)
T KOG0307|consen 156 GS-------------QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQL 222 (1049)
T ss_pred CC-------------CCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceee
Confidence 00 012345556555421 1344456679999999987666555333322 33455666664 45
Q ss_pred EEEeCCCccccCcceEEEEEcCC-CeeEEEEEecCCCeeEEEEeeCC-CeEEEEeC-CeEEEEECCCCeEEEEecccCCc
Q 046773 350 IVVENRELENQNRRLAIVRRVDT-FEEVCRFSLRADRNVNVMGCMNQ-GYALMCVE-GVIRVWEVEGGEYMYSFRERIGE 426 (453)
Q Consensus 350 ~s~s~dg~~~~~~~~i~Iw~~~t-g~~v~~l~~~~~~v~~~~~~~~~-~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~ 426 (453)
+++|.|. ....|.+||+.- -.++++++.|.-++.++.+|+.+ .++++|+- +.|-+||.+||+.+..|....++
T Consensus 223 ~~As~dd----~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW 298 (1049)
T KOG0307|consen 223 LVASGDD----SAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNW 298 (1049)
T ss_pred eeecCCC----CCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcc
Confidence 6666554 344899999763 34577788898889999999976 56666654 99999999999999999875566
Q ss_pred eEE--EEecCC-CEEEEE-eCCcEEEEecC
Q 046773 427 EVI--AFVGDD-RHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 427 ~V~--a~s~d~-~~lasg-~D~~IklWDl~ 452 (453)
+. .|.|-. ..++.+ -||+|-|+.+.
T Consensus 299 -~fdv~w~pr~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 299 -CFDVQWCPRNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred -eeeeeecCCCcchhhhheeccceeeeeee
Confidence 65 455644 366666 89999998763
No 172
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=3.9e-10 Score=106.14 Aligned_cols=231 Identities=15% Similarity=0.169 Sum_probs=147.2
Q ss_pred EEEecCCEEEEEeCCCcEEEEECCCC----------eEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEE
Q 046773 149 CLTLSDLYLACGFADGAVRLFDLTTR----------LHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAV 218 (453)
Q Consensus 149 ~lafs~~~LaSGS~D~TIrlWD~~tg----------~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd 218 (453)
+++.+.++|+.|+.+++|-+..+.+- ..+-++++|.+ .+..++|.++.|++|+. +.|+-|.
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdg--------piy~~~f~d~~Lls~gd-G~V~gw~ 87 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDG--------PIYYLAFHDDFLLSGGD-GLVYGWE 87 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCC--------CeeeeeeehhheeeccC-ceEEEee
Confidence 44455578999999999999887532 12344555543 45667888777877654 7788777
Q ss_pred eecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeecccee
Q 046773 219 IDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVG 298 (453)
Q Consensus 219 ~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~ 298 (453)
|+... + | -++-++|.+...... + .+. .-.||
T Consensus 88 W~E~~-------------e-----------------s---~~~K~lwe~~~P~~~-~-~~e--------------vPeIN 118 (325)
T KOG0649|consen 88 WNEEE-------------E-----------------S---LATKRLWEVKIPMQV-D-AVE--------------VPEIN 118 (325)
T ss_pred ehhhh-------------h-----------------h---ccchhhhhhcCcccc-C-ccc--------------CCccc
Confidence 76410 0 0 123466766543310 0 000 13467
Q ss_pred EEEEcC--CceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEE--ecCCEEEEEeCCCccccCcceEEEEEcCCCe
Q 046773 299 RVRVTS--HESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVD--VNAEAYIVVENRELENQNRRLAIVRRVDTFE 374 (453)
Q Consensus 299 ~v~~s~--~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~--~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~ 374 (453)
++-++| +.++.|.+|+.+.-||+++|+..++.+||+. ++-++. -....+.+++.|| ++||||..|++
T Consensus 119 am~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtD--YvH~vv~R~~~~qilsG~EDG-------tvRvWd~kt~k 189 (325)
T KOG0649|consen 119 AMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTD--YVHSVVGRNANGQILSGAEDG-------TVRVWDTKTQK 189 (325)
T ss_pred eeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcc--eeeeeeecccCcceeecCCCc-------cEEEEeccccc
Confidence 777775 4578888999999999999875555688764 555553 2344678999999 99999999999
Q ss_pred eEEEEEe-------cCCCeeE-EEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEe--cccCCceEEEEecCCCEEEEE-e
Q 046773 375 EVCRFSL-------RADRNVN-VMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSF--RERIGEEVIAFVGDDRHVAAS-C 442 (453)
Q Consensus 375 ~v~~l~~-------~~~~v~~-~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL--~gh~~~~V~a~s~d~~~lasg-~ 442 (453)
+++.+.. +|++-+- .+...+...++ |++ ..+.||.+.+-+|..+| ++| |.-+.++...|+++ +
T Consensus 190 ~v~~ie~yk~~~~lRp~~g~wigala~~edWlv-CGgGp~lslwhLrsse~t~vfpipa~----v~~v~F~~d~vl~~G~ 264 (325)
T KOG0649|consen 190 HVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLV-CGGGPKLSLWHLRSSESTCVFPIPAR----VHLVDFVDDCVLIGGE 264 (325)
T ss_pred eeEEeccccChhhcCcccCceeEEEeccCceEE-ecCCCceeEEeccCCCceEEEecccc----eeEeeeecceEEEecc
Confidence 9887632 2222110 11112344544 555 88999999988776665 344 55455666666665 6
Q ss_pred CCcEEEEec
Q 046773 443 GTNIHLWDF 451 (453)
Q Consensus 443 D~~IklWDl 451 (453)
-+-|.-|.+
T Consensus 265 g~~v~~~~l 273 (325)
T KOG0649|consen 265 GNHVQSYTL 273 (325)
T ss_pred ccceeeeee
Confidence 666666654
No 173
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.31 E-value=5.6e-09 Score=106.75 Aligned_cols=263 Identities=14% Similarity=0.124 Sum_probs=176.0
Q ss_pred EEEEEecC---CEEEEEeCCCcEEEEECCCCeEEEE---ecCCCCCccccccceEEEEEEcC-CeEEEEeCCCCEEEEEe
Q 046773 147 CRCLTLSD---LYLACGFADGAVRLFDLTTRLHVRT---FRPQHSDRLGQFSRAVSGIIITD-SQLIFATLDGDIHVAVI 219 (453)
Q Consensus 147 v~~lafs~---~~LaSGS~D~TIrlWD~~tg~~~~t---l~gh~~~~~~~~s~~V~~i~f~g-~~LasgS~D~tIkvWd~ 219 (453)
|...+|-| ++|+|.+ -+-+-.|+++++...++ |+.+.+ ..|.+++|.+ ..++||..+++|-||+.
T Consensus 203 v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ek-------k~Vl~v~F~engdviTgDS~G~i~Iw~~ 274 (626)
T KOG2106|consen 203 VFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREK-------KFVLCVTFLENGDVITGDSGGNILIWSK 274 (626)
T ss_pred EEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEeeccccccc-------eEEEEEEEcCCCCEEeecCCceEEEEeC
Confidence 45566754 5777776 56789999999976544 444333 3688899974 46899999999999998
Q ss_pred ecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeecccee
Q 046773 220 DDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVG 298 (453)
Q Consensus 220 ~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~ 298 (453)
.+.- ......|.+.|. .+..-.+|. |.||..|+.|-.||-.-.+ ++- -.|..-.+++.
T Consensus 275 ~~~~~~k~~~aH~ggv~----~L~~lr~Gt----llSGgKDRki~~Wd~~y~k-~r~------------~elPe~~G~iR 333 (626)
T KOG2106|consen 275 GTNRISKQVHAHDGGVF----SLCMLRDGT----LLSGGKDRKIILWDDNYRK-LRE------------TELPEQFGPIR 333 (626)
T ss_pred CCceEEeEeeecCCceE----EEEEecCcc----EeecCccceEEeccccccc-ccc------------ccCchhcCCee
Confidence 6622 122225666664 355556665 6789999999999922221 110 01222335666
Q ss_pred EEEEcCCceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEE
Q 046773 299 RVRVTSHESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCR 378 (453)
Q Consensus 299 ~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~ 378 (453)
.|+-....++++.+.+.|--=.++++-. +...||+.+..-.+..|+.+.+++++-|+ .+++|+ +. +.+-+
T Consensus 334 tv~e~~~di~vGTtrN~iL~Gt~~~~f~-~~v~gh~delwgla~hps~~q~~T~gqdk-------~v~lW~-~~-k~~wt 403 (626)
T KOG2106|consen 334 TVAEGKGDILVGTTRNFILQGTLENGFT-LTVQGHGDELWGLATHPSKNQLLTCGQDK-------HVRLWN-DH-KLEWT 403 (626)
T ss_pred EEecCCCcEEEeeccceEEEeeecCCce-EEEEecccceeeEEcCCChhheeeccCcc-------eEEEcc-CC-ceeEE
Confidence 6655444477777777776656666533 33357888887788889999999999999 999998 22 22222
Q ss_pred EEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 379 FSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 379 l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
... .+...++.|+|.+ .++.+.. |.--+-|.++... -++.--... +. +++|||.+||.| .|+.|.|+.+.
T Consensus 404 ~~~-~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~l-v~~~~d~~~-ls~v~ysp~G~~lAvgs~d~~iyiy~Vs 477 (626)
T KOG2106|consen 404 KII-EDPAECADFHPSG-VVAVGTATGRWFVLDTETQDL-VTIHTDNEQ-LSVVRYSPDGAFLAVGSHDNHIYIYRVS 477 (626)
T ss_pred EEe-cCceeEeeccCcc-eEEEeeccceEEEEeccccee-EEEEecCCc-eEEEEEcCCCCEEEEecCCCeEEEEEEC
Confidence 211 2336677788777 5566655 8888889998443 333222233 44 789999999999 99999999765
No 174
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=2.8e-09 Score=111.83 Aligned_cols=210 Identities=10% Similarity=0.034 Sum_probs=124.3
Q ss_pred CEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeee
Q 046773 213 DIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTE 292 (453)
Q Consensus 213 tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~ 292 (453)
.|.|||.+....+.++.+...+ ....|||||+.++.+...+.+..|.+||+.+|+... +..
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~----~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~---------------l~~ 240 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPL----MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ---------------VAS 240 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCce----eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE---------------ccC
Confidence 4667776652123333222211 147999999974322112345689999999987211 111
Q ss_pred eccceeEEEEcCCceEEE---EcCC--cEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEE
Q 046773 293 FTEFVGRVRVTSHESAVA---CTSS--RVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIV 367 (453)
Q Consensus 293 h~~~v~~v~~s~~~~~va---s~d~--tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~I 367 (453)
....+..++++|++..++ +.++ .|.+||+++++.. ++..+.....-.+++|+|+.++..+..+ ...+|
T Consensus 241 ~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~------g~~~I 313 (429)
T PRK03629 241 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQA------GRPQV 313 (429)
T ss_pred CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCC------CCceE
Confidence 222344678999885333 2233 5999999987643 3321112233457889999887776543 04456
Q ss_pred E--EcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC----CeEEEEECCCCeEEEEecc-cCCceEEEEecCCCEEEE
Q 046773 368 R--RVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE----GVIRVWEVEGGEYMYSFRE-RIGEEVIAFVGDDRHVAA 440 (453)
Q Consensus 368 w--~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~----~tIrlWD~~tG~~l~tL~g-h~~~~V~a~s~d~~~las 440 (453)
| +.++++ ...++..........++|++++++..+. ..|.+||+++|+.. .|.. +.+. --+|+|||+.|+.
T Consensus 314 y~~d~~~g~-~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~~~-~p~~SpDG~~i~~ 390 (429)
T PRK03629 314 YKVNINGGA-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTFLDE-TPSIAPNGTMVIY 390 (429)
T ss_pred EEEECCCCC-eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCCCCC-CceECCCCCEEEE
Confidence 6 555554 3444444434456778999999876543 46899999998653 4432 2121 1278999999987
Q ss_pred E-eCCc---EEEEec
Q 046773 441 S-CGTN---IHLWDF 451 (453)
Q Consensus 441 g-~D~~---IklWDl 451 (453)
+ .|+. +.++++
T Consensus 391 ~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 391 SSSQGMGSVLNLVST 405 (429)
T ss_pred EEcCCCceEEEEEEC
Confidence 7 6654 566664
No 175
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.27 E-value=7.1e-11 Score=114.87 Aligned_cols=222 Identities=14% Similarity=0.078 Sum_probs=147.5
Q ss_pred cCCEEEEEeCCCcEEEEECCCCeEEEEecCCC--CCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecCCc--ce
Q 046773 153 SDLYLACGFADGAVRLFDLTTRLHVRTFRPQH--SDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDVAN--ET 226 (453)
Q Consensus 153 s~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~--~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g~--~~ 226 (453)
+-.+.|+.|.|.-|+|||.-||+....+++-. .+.. +.-+++|+ |.+|+ ++..++|||.|+..+|. ..
T Consensus 122 ~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~t-----aAhsL~Fs~DGeqlf-aGykrcirvFdt~RpGr~c~v 195 (406)
T KOG2919|consen 122 STNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYT-----AAHSLQFSPDGEQLF-AGYKRCIRVFDTSRPGRDCPV 195 (406)
T ss_pred ccceeeeccccCceeeeeccccccccchhhhhhHHhhh-----hheeEEecCCCCeEe-ecccceEEEeeccCCCCCCcc
Confidence 34689999999999999999999887775421 1111 11236665 66665 56889999999976661 22
Q ss_pred EEeeec-ceecCce--EEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEc
Q 046773 227 RTAHFG-SVMDDGV--LIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVT 303 (453)
Q Consensus 227 ~~~~~~-~v~~~~~--~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s 303 (453)
+.+... ....-++ .++|+|-... .||.||...++-|.+-..++.+ .+|-+|.+-|..+++.
T Consensus 196 y~t~~~~k~gq~giisc~a~sP~~~~--~~a~gsY~q~~giy~~~~~~pl--------------~llggh~gGvThL~~~ 259 (406)
T KOG2919|consen 196 YTTVTKGKFGQKGIISCFAFSPMDSK--TLAVGSYGQRVGIYNDDGRRPL--------------QLLGGHGGGVTHLQWC 259 (406)
T ss_pred hhhhhcccccccceeeeeeccCCCCc--ceeeecccceeeeEecCCCCce--------------eeecccCCCeeeEEec
Confidence 222111 1111111 3789997542 4899999999988877666622 2345778889999998
Q ss_pred CCc--eEEEEc-CCcEEEEECCCCceEEE-Eeec---cCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCC-Cee
Q 046773 304 SHE--SAVACT-SSRVITFDLRNQGMVLG-ERGY---GRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDT-FEE 375 (453)
Q Consensus 304 ~~~--~~vas~-d~tIrlWDl~t~~~~~~-~~g~---~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~t-g~~ 375 (453)
+++ +++++- |..|-.||++.-+.+.. +..| +.+-....+++.++.|++++.|| .|++||..+ |.+
T Consensus 260 edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG-------~V~vwdlk~~gn~ 332 (406)
T KOG2919|consen 260 EDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDG-------SVRVWDLKDLGNE 332 (406)
T ss_pred cCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCc-------cEEEEecCCCCCc
Confidence 655 566554 46899999997543322 2223 22222344678889999998999 999999998 676
Q ss_pred EEEEEecCCCeeEEEEeeCCCeEEEEeC
Q 046773 376 VCRFSLRADRNVNVMGCMNQGYALMCVE 403 (453)
Q Consensus 376 v~~l~~~~~~v~~~~~~~~~~~lls~s~ 403 (453)
+..+..+.+.+..+.++|---.++++++
T Consensus 333 ~sv~~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 333 VSVTGNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred ccccccccccccceecCcccceeeeccC
Confidence 7777667777777777776444455554
No 176
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.24 E-value=1.5e-10 Score=120.50 Aligned_cols=226 Identities=12% Similarity=0.126 Sum_probs=147.1
Q ss_pred EeCCCCEEEEEeecCCcceEEeeecceecCceE--EEEeCC-CceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcce
Q 046773 208 ATLDGDIHVAVIDDVANETRTAHFGSVMDDGVL--IDFTGC-SRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTV 284 (453)
Q Consensus 208 gS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~--v~Fs~d-g~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v 284 (453)
++..+.|-|++++.+|.-+-.+ ...+.+.... ++++|= -+. ||.+..|+.|+||.+.++-.-. ....|+
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv-~p~l~Ngt~vtDl~WdPFD~~r---LAVa~ddg~i~lWr~~a~gl~e--~~~tPe-- 670 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGV-MPGLFNGTLVTDLHWDPFDDER---LAVATDDGQINLWRLTANGLPE--NEMTPE-- 670 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCccc-ccccccCceeeecccCCCChHH---eeecccCceEEEEEeccCCCCc--ccCCcc--
Confidence 4557788899998766211111 1111111111 233332 222 8899999999999998754111 011122
Q ss_pred eeeeeeeeeccceeEEEEcC---CceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccC
Q 046773 285 MGWRMLTEFTEFVGRVRVTS---HESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQN 361 (453)
Q Consensus 285 ~~w~~l~~h~~~v~~v~~s~---~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~ 361 (453)
..|+.|.+.+.+++|+| +-+++++.|.||+|||++++..-..+.||+.++.-.+.+++|..++++..||
T Consensus 671 ---~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg----- 742 (1012)
T KOG1445|consen 671 ---KILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDG----- 742 (1012)
T ss_pred ---eeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCc-----
Confidence 34789999999999997 4467888999999999999865556789999988888999999999999999
Q ss_pred cceEEEEEcCCCe-eEEEEEec-CCCeeEEEEeeCCCeEEEEe----C-CeEEEEECCC--CeEEEEecccC--CceEEE
Q 046773 362 RRLAIVRRVDTFE-EVCRFSLR-ADRNVNVMGCMNQGYALMCV----E-GVIRVWEVEG--GEYMYSFRERI--GEEVIA 430 (453)
Q Consensus 362 ~~~i~Iw~~~tg~-~v~~l~~~-~~~v~~~~~~~~~~~lls~s----~-~tIrlWD~~t--G~~l~tL~gh~--~~~V~a 430 (453)
+++|++-..++ ++++-.+- +..--.+.+.-++++++..+ + ..|.++|.++ +..|+++.--. ...|-.
T Consensus 743 --~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~ 820 (1012)
T KOG1445|consen 743 --TLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPH 820 (1012)
T ss_pred --eEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCcccccc
Confidence 99999876543 33321110 01122345556888877543 2 7899999886 56676652111 111113
Q ss_pred EecCCCE-EEEE-eCCcEEEEec
Q 046773 431 FVGDDRH-VAAS-CGTNIHLWDF 451 (453)
Q Consensus 431 ~s~d~~~-lasg-~D~~IklWDl 451 (453)
..+|... +++| -|..|.++.+
T Consensus 821 YD~Ds~~lfltGKGD~~v~~yEv 843 (1012)
T KOG1445|consen 821 YDYDSNVLFLTGKGDRFVNMYEV 843 (1012)
T ss_pred ccCCCceEEEecCCCceEEEEEe
Confidence 3456665 4788 9999999875
No 177
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=6e-09 Score=109.36 Aligned_cols=208 Identities=11% Similarity=0.039 Sum_probs=122.7
Q ss_pred CEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEee---CCCeEEEeeCCCCcEEecccccCCcceeeeee
Q 046773 213 DIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGL---AGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRM 289 (453)
Q Consensus 213 tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS---~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~ 289 (453)
+|.+||.+....+.++.+...+ ...+|+|||+. |+..+ .+..|.+||+.+++...
T Consensus 185 ~l~i~D~~g~~~~~lt~~~~~v----~~p~wSpDg~~---la~~s~~~~~~~l~~~dl~~g~~~~--------------- 242 (433)
T PRK04922 185 ALQVADSDGYNPQTILRSAEPI----LSPAWSPDGKK---LAYVSFERGRSAIYVQDLATGQREL--------------- 242 (433)
T ss_pred EEEEECCCCCCceEeecCCCcc----ccccCCCCCCE---EEEEecCCCCcEEEEEECCCCCEEE---------------
Confidence 5778887641133333332222 13689999997 44444 34579999999887321
Q ss_pred eeeeccceeEEEEcCCce--EE-EEcCC--cEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeC-CCccccCcc
Q 046773 290 LTEFTEFVGRVRVTSHES--AV-ACTSS--RVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVEN-RELENQNRR 363 (453)
Q Consensus 290 l~~h~~~v~~v~~s~~~~--~v-as~d~--tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~-dg~~~~~~~ 363 (453)
+..+.....+++|+|++. +. .+.++ .|.+||+.++++ ..+..+.....-.+++++|+.++..+. ++ ..
T Consensus 243 l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g-----~~ 316 (433)
T PRK04922 243 VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGG-----RP 316 (433)
T ss_pred eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCC-----Cc
Confidence 112223334678898774 22 24343 599999998764 333222222223578888988877664 33 01
Q ss_pred eEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC----CeEEEEECCCCeEEEEec-ccCCceEEEEecCCCEE
Q 046773 364 LAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE----GVIRVWEVEGGEYMYSFR-ERIGEEVIAFVGDDRHV 438 (453)
Q Consensus 364 ~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~----~tIrlWD~~tG~~l~tL~-gh~~~~V~a~s~d~~~l 438 (453)
.+.++++++++ ...++..+.......++|++++++..+. ..|.+||+.+|+.. .|. ++... --+++|||+.|
T Consensus 317 ~iy~~dl~~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~-~p~~spdG~~i 393 (433)
T PRK04922 317 QIYRVAASGGS-AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDE-SPSFAPNGSMV 393 (433)
T ss_pred eEEEEECCCCC-eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCC-CceECCCCCEE
Confidence 34445666664 3344444444446788999999876543 37999999988754 443 22111 11789999988
Q ss_pred EEE-e-CC--cEEEEec
Q 046773 439 AAS-C-GT--NIHLWDF 451 (453)
Q Consensus 439 asg-~-D~--~IklWDl 451 (453)
+.. . .+ .|.++|+
T Consensus 394 ~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 394 LYATREGGRGVLAAVST 410 (433)
T ss_pred EEEEecCCceEEEEEEC
Confidence 755 3 23 4556654
No 178
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.23 E-value=6.3e-09 Score=104.79 Aligned_cols=220 Identities=15% Similarity=0.111 Sum_probs=132.4
Q ss_pred EEEeCCCCEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEe-eCCCeEEEeeCC-CCc-EEecccccCC
Q 046773 206 IFATLDGDIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAG-LAGRAFHIWDRQ-AEE-VFVGGDLTDH 281 (453)
Q Consensus 206 asgS~D~tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSg-S~D~tIrvWD~~-tg~-~~~g~~l~~~ 281 (453)
++.+.|++|.+|++++.| +..+..-. ...+...++|+||+++ |+.+ ..++.|.+|++. +|+ .+..
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~--~~~~~~~l~~spd~~~---lyv~~~~~~~i~~~~~~~~g~l~~~~------ 74 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD--VPGQVQPMVISPDKRH---LYVGVRPEFRVLSYRIADDGALTFAA------ 74 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe--cCCCCccEEECCCCCE---EEEEECCCCcEEEEEECCCCceEEee------
Confidence 334678999999996434 22221111 0112234899999997 4444 458899999997 344 2211
Q ss_pred cceeeeeeeeeeccceeEEEEcCCc--eEEEEc-CCcEEEEECCCCceE----EEEeeccCCeEEEEEEecCCEEEEEeC
Q 046773 282 NTVMGWRMLTEFTEFVGRVRVTSHE--SAVACT-SSRVITFDLRNQGMV----LGERGYGRGLYVTSVDVNAEAYIVVEN 354 (453)
Q Consensus 282 ~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~-d~tIrlWDl~t~~~~----~~~~g~~~~~~v~~~~~~g~~l~s~s~ 354 (453)
.. ........+.|+|++ +++++. ++.|.+||+++.+.+ ....+.. .....+++|+++.+++++.
T Consensus 75 -------~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~-~~~~~~~~p~g~~l~v~~~ 145 (330)
T PRK11028 75 -------ES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLE-GCHSANIDPDNRTLWVPCL 145 (330)
T ss_pred -------ee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCC-cccEeEeCCCCCEEEEeeC
Confidence 00 011234568899876 344443 578999999753221 1111211 1122467888888766554
Q ss_pred -CCccccCcceEEEEEcCCCeeEE-----EEEe-cCCCeeEEEEeeCCCeEEEEeC--CeEEEEECC--CC--eEEEEec
Q 046773 355 -RELENQNRRLAIVRRVDTFEEVC-----RFSL-RADRNVNVMGCMNQGYALMCVE--GVIRVWEVE--GG--EYMYSFR 421 (453)
Q Consensus 355 -dg~~~~~~~~i~Iw~~~tg~~v~-----~l~~-~~~~v~~~~~~~~~~~lls~s~--~tIrlWD~~--tG--~~l~tL~ 421 (453)
++ .|.||++++...+. .... .+...+.++++++++++.++.. ++|.+||+. ++ +.++++.
T Consensus 146 ~~~-------~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~ 218 (330)
T PRK11028 146 KED-------RIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLD 218 (330)
T ss_pred CCC-------EEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEe
Confidence 35 89999998632221 1111 1233567899999999877654 999999997 34 3455543
Q ss_pred ccC------CceE-EEEecCCCEEEEE--eCCcEEEEecC
Q 046773 422 ERI------GEEV-IAFVGDDRHVAAS--CGTNIHLWDFG 452 (453)
Q Consensus 422 gh~------~~~V-~a~s~d~~~lasg--~D~~IklWDl~ 452 (453)
.+. .... ..|+||+++|.++ .+++|.+|++.
T Consensus 219 ~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~ 258 (330)
T PRK11028 219 MMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVS 258 (330)
T ss_pred cCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEe
Confidence 221 1101 2578999998776 58999999873
No 179
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.21 E-value=2.4e-10 Score=108.64 Aligned_cols=242 Identities=13% Similarity=0.129 Sum_probs=164.4
Q ss_pred EEEEEecC-CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE-cCCeEEEEeCCCCEEEEEeecC--
Q 046773 147 CRCLTLSD-LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII-TDSQLIFATLDGDIHVAVIDDV-- 222 (453)
Q Consensus 147 v~~lafs~-~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f-~g~~LasgS~D~tIkvWd~~~~-- 222 (453)
|+|+-|.. ++|.+|..-|.|++|+++|.+.+-.+++++. ..|..++. -++.|.+-+.|.++.+|++...
T Consensus 17 v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~-------~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~ 89 (323)
T KOG0322|consen 17 VTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGR-------LFITNLQSIPNDSLDTQGRDPLLILWTIAYSAF 89 (323)
T ss_pred heehhhccchhhhcccccceEEEEEeecCccchhhhhhcc-------ceeeceeecCCcchhhcCCCceEEEEEccCcce
Confidence 78888875 5799999999999999999998888886654 25555653 3577888888888889987540
Q ss_pred -----------CcceEEeeec------------------c-----------eecC------ceEEEEe---CCCceeeEE
Q 046773 223 -----------ANETRTAHFG------------------S-----------VMDD------GVLIDFT---GCSRYWVGL 253 (453)
Q Consensus 223 -----------g~~~~~~~~~------------------~-----------v~~~------~~~v~Fs---~dg~~~~~L 253 (453)
|......+.. + +..+ +..+.|+ .++.+. .|
T Consensus 90 i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~-ll 168 (323)
T KOG0322|consen 90 ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTF-LL 168 (323)
T ss_pred EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceE-EE
Confidence 0000000000 0 0000 0012222 224442 47
Q ss_pred EEeeCCCeEEEeeCCCCc-EEecccccCCcceeeee---eeeeeccceeEEEEcC--CceEEEEcCCcEEEEECC--CCc
Q 046773 254 YAGLAGRAFHIWDRQAEE-VFVGGDLTDHNTVMGWR---MLTEFTEFVGRVRVTS--HESAVACTSSRVITFDLR--NQG 325 (453)
Q Consensus 254 aSgS~D~tIrvWD~~tg~-~~~g~~l~~~~~v~~w~---~l~~h~~~v~~v~~s~--~~~~vas~d~tIrlWDl~--t~~ 325 (453)
+.|-.++.|-+||+.++. ++. + ...|. ....|..+|.+|.|.+ ++-++++.+..+-.|.+. ++.
T Consensus 169 laGyEsghvv~wd~S~~~~~~~---~-----~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gs 240 (323)
T KOG0322|consen 169 LAGYESGHVVIWDLSTGDKIIQ---L-----PQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGS 240 (323)
T ss_pred EEeccCCeEEEEEccCCceeec---c-----ccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCc
Confidence 789999999999999985 221 0 01122 2357889999998874 334666667778888875 344
Q ss_pred eEEE-E-eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC
Q 046773 326 MVLG-E-RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE 403 (453)
Q Consensus 326 ~~~~-~-~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~ 403 (453)
+.++ + .....++.=..+-+|++.+++|+-|+ -|||+.|.|.+++..++.|..++..++|+|+...+++++-
T Consensus 241 lq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~-------RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaask 313 (323)
T KOG0322|consen 241 LQIRKEITLKNPGVSGVRIRPDGKILATAGWDH-------RIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASK 313 (323)
T ss_pred ccccceEEecCCCccceEEccCCcEEeecccCC-------cEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccC
Confidence 4332 1 11111222246779999999999999 9999999999999999999999999999999777766665
Q ss_pred -CeEEEEEC
Q 046773 404 -GVIRVWEV 411 (453)
Q Consensus 404 -~tIrlWD~ 411 (453)
.+|-||++
T Consensus 314 D~rISLWkL 322 (323)
T KOG0322|consen 314 DARISLWKL 322 (323)
T ss_pred CceEEeeec
Confidence 99999986
No 180
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.19 E-value=2.3e-10 Score=116.29 Aligned_cols=270 Identities=16% Similarity=0.136 Sum_probs=172.5
Q ss_pred EEEEEec--CCEEEEEeCCCcEEEEECCCCeEEEEecCCC-CCccccccceEEEEEEc-CCeEEEEeCCCCEEEEEeecC
Q 046773 147 CRCLTLS--DLYLACGFADGAVRLFDLTTRLHVRTFRPQH-SDRLGQFSRAVSGIIIT-DSQLIFATLDGDIHVAVIDDV 222 (453)
Q Consensus 147 v~~lafs--~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~-~~~~~~~s~~V~~i~f~-g~~LasgS~D~tIkvWd~~~~ 222 (453)
|..|.|+ ++.|+|||.|.+|-+||..+++....|.+.| ...|. + .=|-|+ .+.|++.+.|+.+++-.+...
T Consensus 145 VntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQ----a-KFiP~s~d~ti~~~s~dgqvr~s~i~~t 219 (559)
T KOG1334|consen 145 VNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQ----A-KFIPFSGDRTIVTSSRDGQVRVSEILET 219 (559)
T ss_pred cceeeecccCceeeccCccceEEeehhhccCcccccccccccchhh----h-hccCCCCCcCceeccccCceeeeeeccc
Confidence 7889998 5899999999999999999999877776433 21111 0 001233 456999999999998765432
Q ss_pred C--cce--EEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc---EEecccccCCcceeeeeeeeeecc
Q 046773 223 A--NET--RTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE---VFVGGDLTDHNTVMGWRMLTEFTE 295 (453)
Q Consensus 223 g--~~~--~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~---~~~g~~l~~~~~v~~w~~l~~h~~ 295 (453)
| ..+ +.-|.+.+. .++.-|+... .|.|++.|+.|.=.|++++. .+... ..+..
T Consensus 220 ~~~e~t~rl~~h~g~vh----klav~p~sp~--~f~S~geD~~v~~~Dlr~~~pa~~~~cr--------------~~~~~ 279 (559)
T KOG1334|consen 220 GYVENTKRLAPHEGPVH----KLAVEPDSPK--PFLSCGEDAVVFHIDLRQDVPAEKFVCR--------------EADEK 279 (559)
T ss_pred cceecceecccccCccc----eeeecCCCCC--cccccccccceeeeeeccCCccceeeee--------------ccCCc
Confidence 3 223 223555543 3666666654 58899999999999998876 22210 01111
Q ss_pred ---ceeEEEEcCCc---eEEEEcCCcEEEEECCCCc-----------eEEEEeeccCCeEEEEEEec--C-CEEEEEeCC
Q 046773 296 ---FVGRVRVTSHE---SAVACTSSRVITFDLRNQG-----------MVLGERGYGRGLYVTSVDVN--A-EAYIVVENR 355 (453)
Q Consensus 296 ---~v~~v~~s~~~---~~vas~d~tIrlWDl~t~~-----------~~~~~~g~~~~~~v~~~~~~--g-~~l~s~s~d 355 (453)
..+.++++|.. .++++.|.-+|++|.+.-. |.+.+.. ...+.|+++.++ + +.|++- .|
T Consensus 280 ~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~-d~~v~ITgl~Ysh~~sElLaSY-nD 357 (559)
T KOG1334|consen 280 ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVE-DDPVNITGLVYSHDGSELLASY-ND 357 (559)
T ss_pred cceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccc-cCcccceeEEecCCccceeeee-cc
Confidence 12456666543 5677777788999986431 1111111 223445666555 3 334332 23
Q ss_pred CccccCcceEEEEEcCC--C----------eeEE-EEEecCCC--eeEEEEe-eCCCeEEEEeC-CeEEEEECCCCeEEE
Q 046773 356 ELENQNRRLAIVRRVDT--F----------EEVC-RFSLRADR--NVNVMGC-MNQGYALMCVE-GVIRVWEVEGGEYMY 418 (453)
Q Consensus 356 g~~~~~~~~i~Iw~~~t--g----------~~v~-~l~~~~~~--v~~~~~~-~~~~~lls~s~-~tIrlWD~~tG~~l~ 418 (453)
. .|.++.-+- | ..+. ..++|.+. |..+-|. |...|++++|+ |.|-|||-.+++.|+
T Consensus 358 e-------~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~ 430 (559)
T KOG1334|consen 358 E-------DIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIR 430 (559)
T ss_pred c-------ceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHH
Confidence 3 566653321 2 1111 14555433 5566554 56789999999 999999999999999
Q ss_pred EecccCCceEEEEecCC--CEEEEE-eCCcEEEEec
Q 046773 419 SFRERIGEEVIAFVGDD--RHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 419 tL~gh~~~~V~a~s~d~--~~lasg-~D~~IklWDl 451 (453)
-++|-... |+++-|-. ..|||+ -|.-||||--
T Consensus 431 ~MegDr~V-VNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 431 FMEGDRHV-VNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred Hhhcccce-EeccCCCCCCchhhccCCccceeeecC
Confidence 99986665 99997644 578887 8999999953
No 181
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.16 E-value=2.1e-09 Score=112.67 Aligned_cols=257 Identities=10% Similarity=0.097 Sum_probs=163.6
Q ss_pred EEEEEe--cCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE--cCCeEEEEeCCCCEEEEEeecC
Q 046773 147 CRCLTL--SDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATLDGDIHVAVIDDV 222 (453)
Q Consensus 147 v~~laf--s~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~D~tIkvWd~~~~ 222 (453)
|+.++| +|..|+-+. |..+-|+|+..|..+.||+||.. .|.++++ +|.+.|||+.|+.+.||+-.-.
T Consensus 15 i~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKD--------tVycVAys~dGkrFASG~aDK~VI~W~~klE 85 (1081)
T KOG1538|consen 15 INDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKD--------TVYCVAYAKDGKRFASGSADKSVIIWTSKLE 85 (1081)
T ss_pred hheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccc--------eEEEEEEccCCceeccCCCceeEEEeccccc
Confidence 455666 455555554 44688999999999999999764 6788876 5899999999999999986543
Q ss_pred CcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEE
Q 046773 223 ANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRV 302 (453)
Q Consensus 223 g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~ 302 (453)
| -..-.|...+- .+.|.|..+. |+|+|- ...-+|..+.+.... ......+++.+.
T Consensus 86 G-~LkYSH~D~IQ----CMsFNP~~h~---LasCsL-sdFglWS~~qK~V~K----------------~kss~R~~~CsW 140 (1081)
T KOG1538|consen 86 G-ILKYSHNDAIQ----CMSFNPITHQ---LASCSL-SDFGLWSPEQKSVSK----------------HKSSSRIICCSW 140 (1081)
T ss_pred c-eeeeccCCeee----EeecCchHHH---hhhcch-hhccccChhhhhHHh----------------hhhheeEEEeee
Confidence 4 22223544332 4789999885 788774 346788876654211 011245666777
Q ss_pred cCCce--EEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCC-------
Q 046773 303 TSHES--AVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTF------- 373 (453)
Q Consensus 303 s~~~~--~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg------- 373 (453)
..++. +++-.++||.|=+-.-....+..+.-+....|.++.+++.. ..| .+-++-|-||...
T Consensus 141 tnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~s-----g~G----~~di~aV~DW~qTLSFy~Ls 211 (1081)
T KOG1538|consen 141 TNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSS-----GEG----RNDILAVADWGQTLSFYQLS 211 (1081)
T ss_pred cCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCC-----CCC----ccceEEEEeccceeEEEEec
Confidence 77775 44456889887764322222223222334456665554321 111 0115556566532
Q ss_pred -eeE---EEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCc
Q 046773 374 -EEV---CRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTN 445 (453)
Q Consensus 374 -~~v---~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~ 445 (453)
+-+ .++.+.| ..+..+++|.+++.+++ +.++++- ..|-.|.|+.. .+.+|| ++.|+++.++.| .|||
T Consensus 212 G~~Igk~r~L~FdP---~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~-~D~WIWtV~~~PNsQ~v~~GCqDGT 286 (1081)
T KOG1538|consen 212 GKQIGKDRALNFDP---CCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGE-QDSWIWTVQAKPNSQYVVVGCQDGT 286 (1081)
T ss_pred ceeecccccCCCCc---hhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccc-cceeEEEEEEccCCceEEEEEccCe
Confidence 111 1122222 23456789999998877 8899884 45888888865 444499 556999999999 9999
Q ss_pred EEEEec
Q 046773 446 IHLWDF 451 (453)
Q Consensus 446 IklWDl 451 (453)
|-.+++
T Consensus 287 iACyNl 292 (1081)
T KOG1538|consen 287 IACYNL 292 (1081)
T ss_pred eehhhh
Confidence 987664
No 182
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.16 E-value=1.9e-08 Score=105.63 Aligned_cols=227 Identities=9% Similarity=0.010 Sum_probs=135.1
Q ss_pred CCcEEEEECCCCeEEEEecCCCCCccccccceEEE--EEEcCCeEEEEeC---CCCEEEEEeecCC-cceEEeeecceec
Q 046773 163 DGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSG--IIITDSQLIFATL---DGDIHVAVIDDVA-NETRTAHFGSVMD 236 (453)
Q Consensus 163 D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~--i~f~g~~LasgS~---D~tIkvWd~~~~g-~~~~~~~~~~v~~ 236 (453)
...|.+||...+.. +.+..+.. .+.. +++||+.|++.+. +..|.+|++.+ | ...+....+..
T Consensus 178 ~~~l~~~d~dg~~~-~~lt~~~~--------~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~-G~~~~l~~~~~~~-- 245 (429)
T PRK03629 178 PYELRVSDYDGYNQ-FVVHRSPQ--------PLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN-GAVRQVASFPRHN-- 245 (429)
T ss_pred ceeEEEEcCCCCCC-EEeecCCC--------ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCC-CCeEEccCCCCCc--
Confidence 44799999986654 34432221 2233 4557888988764 34588888876 5 22222121211
Q ss_pred CceEEEEeCCCceeeEEEEeeCC--CeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEEEc
Q 046773 237 DGVLIDFTGCSRYWVGLYAGLAG--RAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVACT 312 (453)
Q Consensus 237 ~~~~v~Fs~dg~~~~~LaSgS~D--~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~vas~ 312 (453)
..+.|+|||+.++ ++.+.+ ..|.+||+++++... +..+...+....++|++. +.++.
T Consensus 246 --~~~~~SPDG~~La--~~~~~~g~~~I~~~d~~tg~~~~---------------lt~~~~~~~~~~wSPDG~~I~f~s~ 306 (429)
T PRK03629 246 --GAPAFSPDGSKLA--FALSKTGSLNLYVMDLASGQIRQ---------------VTDGRSNNTEPTWFPDSQNLAYTSD 306 (429)
T ss_pred --CCeEECCCCCEEE--EEEcCCCCcEEEEEECCCCCEEE---------------ccCCCCCcCceEECCCCCEEEEEeC
Confidence 1378999999743 333334 358899999887321 122223455678888874 33344
Q ss_pred C-CcEEEE--ECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEE
Q 046773 313 S-SRVITF--DLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNV 389 (453)
Q Consensus 313 d-~tIrlW--Dl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~ 389 (453)
+ +..+|| |+.+++. .++..........+++|+|+.++..+.++ ....+.++++++++. ..++. .......
T Consensus 307 ~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~----g~~~I~~~dl~~g~~-~~Lt~-~~~~~~p 379 (429)
T PRK03629 307 QAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNG----GQQHIAKQDLATGGV-QVLTD-TFLDETP 379 (429)
T ss_pred CCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccC----CCceEEEEECCCCCe-EEeCC-CCCCCCc
Confidence 3 344555 7776543 33322222233467889999987766543 122677888888763 33432 1123456
Q ss_pred EEeeCCCeEEEEeC----CeEEEEECCCCeEEEEecccCCceEE
Q 046773 390 MGCMNQGYALMCVE----GVIRVWEVEGGEYMYSFRERIGEEVI 429 (453)
Q Consensus 390 ~~~~~~~~lls~s~----~tIrlWD~~tG~~l~tL~gh~~~~V~ 429 (453)
.++||+++++.++. ..+.++++ +|+..+.|.+|.+. +.
T Consensus 380 ~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~-~~ 421 (429)
T PRK03629 380 SIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQ-VK 421 (429)
T ss_pred eECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCC-cC
Confidence 78899999887664 35788888 57777888887665 44
No 183
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=4.9e-09 Score=101.64 Aligned_cols=189 Identities=8% Similarity=0.101 Sum_probs=115.3
Q ss_pred EEEeCCCceeeEEEEeeCCCeEEEeeCCCCc-EEecccccCCcceeeeeeeeeeccceeEEEEc-CC-c--eEEEEcCCc
Q 046773 241 IDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE-VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVT-SH-E--SAVACTSSR 315 (453)
Q Consensus 241 v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~-~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s-~~-~--~~vas~d~t 315 (453)
|.|++-||. +|++|.|.+|+|||.++.. .... + ...+.|.+.|.+|... |. + +++.|-|+|
T Consensus 19 Vs~D~~GRR---mAtCSsDq~vkI~d~~~~s~~W~~---T--------s~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt 84 (361)
T KOG2445|consen 19 VSFDFYGRR---MATCSSDQTVKIWDSTSDSGTWSC---T--------SSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT 84 (361)
T ss_pred eeecccCce---eeeccCCCcEEEEeccCCCCceEE---e--------eeEEecCCcEEEEEecCccccceEEEEecCCc
Confidence 789999997 8999999999999986544 2110 0 1235777888888764 32 2 344466899
Q ss_pred EEEEECC-----CCc--eE--EEEeeccCCeEEEEEEecC--CEEEEEeCCCccccCcceEEEEEcCCCeeEEE------
Q 046773 316 VITFDLR-----NQG--MV--LGERGYGRGLYVTSVDVNA--EAYIVVENRELENQNRRLAIVRRVDTFEEVCR------ 378 (453)
Q Consensus 316 IrlWDl~-----t~~--~~--~~~~g~~~~~~v~~~~~~g--~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~------ 378 (453)
++||.=. ..+ -. .++......+.-.+|.|.. =++++++.|| ++||++....-.+..
T Consensus 85 v~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG-------~lRIYEA~dp~nLs~W~Lq~E 157 (361)
T KOG2445|consen 85 VSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADG-------ILRIYEAPDPMNLSQWTLQHE 157 (361)
T ss_pred eeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCc-------EEEEEecCCccccccchhhhh
Confidence 9999752 111 11 1122222233334455543 3568889999 999998775422221
Q ss_pred EE---ecCCC----eeEEEEee---CCCeEEEEeC------CeEEEEECCCC--eE--EEEecccCCceEE--EEec---
Q 046773 379 FS---LRADR----NVNVMGCM---NQGYALMCVE------GVIRVWEVEGG--EY--MYSFRERIGEEVI--AFVG--- 433 (453)
Q Consensus 379 l~---~~~~~----v~~~~~~~---~~~~lls~s~------~tIrlWD~~tG--~~--l~tL~gh~~~~V~--a~s~--- 433 (453)
++ .-|.. -..+..++ ..-+++.+++ +.++||.-..+ ++ +.+|.+|++. |. +|+|
T Consensus 158 i~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dp-I~di~wAPn~G 236 (361)
T KOG2445|consen 158 IQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDP-IRDISWAPNIG 236 (361)
T ss_pred hhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCc-ceeeeeccccC
Confidence 11 11111 11233332 1234455543 58999977653 44 4578899999 98 5666
Q ss_pred -CCCEEEEE-eCCcEEEEecC
Q 046773 434 -DDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 434 -d~~~lasg-~D~~IklWDl~ 452 (453)
+...||.+ .|| |+||.++
T Consensus 237 r~y~~lAvA~kDg-v~I~~v~ 256 (361)
T KOG2445|consen 237 RSYHLLAVATKDG-VRIFKVK 256 (361)
T ss_pred CceeeEEEeecCc-EEEEEEe
Confidence 33468888 999 9999986
No 184
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=7e-10 Score=111.18 Aligned_cols=187 Identities=12% Similarity=0.098 Sum_probs=118.9
Q ss_pred EEEcCCeEEEEeCCCCEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecc
Q 046773 198 IIITDSQLIFATLDGDIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGG 276 (453)
Q Consensus 198 i~f~g~~LasgS~D~tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~ 276 (453)
+.++|..|++|..|+++|||+|..-- +.....|.+.|. .++|||||++ |+|-+.| ..+||++++|-.+.
T Consensus 152 f~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~----DL~FS~dgk~---lasig~d-~~~VW~~~~g~~~a-- 221 (398)
T KOG0771|consen 152 FNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVK----DLDFSPDGKF---LASIGAD-SARVWSVNTGAALA-- 221 (398)
T ss_pred EcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccc----cceeCCCCcE---EEEecCC-ceEEEEeccCchhh--
Confidence 34467899999999999999986511 122233445543 3899999997 7888888 89999999995221
Q ss_pred cccCCcceeeeeeeeeeccceeEEEEcCCc-----eEEEEc--CCcEEEEECCCCce--EEE---E-eeccCCeEEEEEE
Q 046773 277 DLTDHNTVMGWRMLTEFTEFVGRVRVTSHE-----SAVACT--SSRVITFDLRNQGM--VLG---E-RGYGRGLYVTSVD 343 (453)
Q Consensus 277 ~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~-----~~vas~--d~tIrlWDl~t~~~--~~~---~-~g~~~~~~v~~~~ 343 (453)
.+++- +-.....+++|+-+. .+.++. .+.|++||+..-.. .++ . ..+ ..+...+++
T Consensus 222 ~~t~~----------~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~-~siSsl~VS 290 (398)
T KOG0771|consen 222 RKTPF----------SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF-KSISSLAVS 290 (398)
T ss_pred hcCCc----------ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc-CcceeEEEc
Confidence 00100 000112245665443 333332 25677777653211 111 1 111 134445677
Q ss_pred ecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEE-EecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECC
Q 046773 344 VNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRF-SLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVE 412 (453)
Q Consensus 344 ~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l-~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~ 412 (453)
.+|+.++.++.|| .+-|.+..+-++++-+ ..|..-|..+.|+|+.+++++.+. .++.|--++
T Consensus 291 ~dGkf~AlGT~dG-------sVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 291 DDGKFLALGTMDG-------SVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred CCCcEEEEeccCC-------cEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 8899999999999 9999988876665544 334455889999999999887665 666665544
No 185
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=2.8e-09 Score=110.74 Aligned_cols=250 Identities=12% Similarity=0.117 Sum_probs=156.2
Q ss_pred EEEEecCCCCCccccccceEEEEEE--cCCeEEEEeCCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEE
Q 046773 176 HVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGL 253 (453)
Q Consensus 176 ~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~L 253 (453)
|-..++||.+ .|++|+. +|..|+|||.|||+|||.+.+ |...++...+.++ ..|+|+|.+...+ |
T Consensus 392 ~~lvyrGHtg--------~Vr~iSvdp~G~wlasGsdDGtvriWEi~T-gRcvr~~~~d~~I---~~vaw~P~~~~~v-L 458 (733)
T KOG0650|consen 392 CALVYRGHTG--------LVRSISVDPSGEWLASGSDDGTVRIWEIAT-GRCVRTVQFDSEI---RSVAWNPLSDLCV-L 458 (733)
T ss_pred eeeeEeccCC--------eEEEEEecCCcceeeecCCCCcEEEEEeec-ceEEEEEeeccee---EEEEecCCCCcee-E
Confidence 3445667654 6788765 578899999999999999998 7444443333322 2599999998764 4
Q ss_pred EEeeCCCeEEEeeCCCCc---------EEecc-cccC-Ccceeee------------eeeeeeccceeEEEEcCCce--E
Q 046773 254 YAGLAGRAFHIWDRQAEE---------VFVGG-DLTD-HNTVMGW------------RMLTEFTEFVGRVRVTSHES--A 308 (453)
Q Consensus 254 aSgS~D~tIrvWD~~tg~---------~~~g~-~l~~-~~~v~~w------------~~l~~h~~~v~~v~~s~~~~--~ 308 (453)
|.+-. .++-|-|..=|. +|.-. .-.. +.++..| +....|...|++|..+.++. +
T Consensus 459 AvA~~-~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYla 537 (733)
T KOG0650|consen 459 AVAVG-ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLA 537 (733)
T ss_pred EEEec-CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEE
Confidence 54433 336665544442 11100 0000 1122334 23446677888888887664 3
Q ss_pred EEEcC---CcEEEEECCCCceEEEE-eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCC
Q 046773 309 VACTS---SRVITFDLRNQGMVLGE-RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRAD 384 (453)
Q Consensus 309 vas~d---~tIrlWDl~t~~~~~~~-~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~ 384 (453)
+.+.+ ..|-|.+|........+ .-++ .+....|.|.--.+++++. . .++|+|+...+.+..+.-..-
T Consensus 538 tV~~~~~~~~VliHQLSK~~sQ~PF~kskG-~vq~v~FHPs~p~lfVaTq-~-------~vRiYdL~kqelvKkL~tg~k 608 (733)
T KOG0650|consen 538 TVMPDSGNKSVLIHQLSKRKSQSPFRKSKG-LVQRVKFHPSKPYLFVATQ-R-------SVRIYDLSKQELVKKLLTGSK 608 (733)
T ss_pred EeccCCCcceEEEEecccccccCchhhcCC-ceeEEEecCCCceEEEEec-c-------ceEEEehhHHHHHHHHhcCCe
Confidence 33333 45889999865332222 1111 1223456776667776653 2 689999876544443333334
Q ss_pred CeeEEEEeeCCCeEEEEeC-CeEEEEECCCC-eEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEE
Q 046773 385 RNVNVMGCMNQGYALMCVE-GVIRVWEVEGG-EYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLW 449 (453)
Q Consensus 385 ~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG-~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklW 449 (453)
++.++..++.|..++.++- +.+-..|+.-+ +..++|.-|... |+ +|.+.-..++|+ .|+++.|+
T Consensus 609 wiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~a-vr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 609 WISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKA-VRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred eeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhh-hhhhhhccccceeeeecCCCcEEEE
Confidence 5777788888888887776 88877898754 666788888877 77 455666678999 88999876
No 186
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.11 E-value=1.3e-08 Score=106.85 Aligned_cols=224 Identities=12% Similarity=0.031 Sum_probs=133.9
Q ss_pred CCcEEEEECCCCeEEEEecCCCCCccccccceEEE--EEEcCCeEEEEeCCC---CEEEEEeecCC-cceEEeeecceec
Q 046773 163 DGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSG--IIITDSQLIFATLDG---DIHVAVIDDVA-NETRTAHFGSVMD 236 (453)
Q Consensus 163 D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~--i~f~g~~LasgS~D~---tIkvWd~~~~g-~~~~~~~~~~v~~ 236 (453)
..+|.|||.. |.+.+.+..+.. .+.+ .++||+.|++.+.++ .|.+||+.+ | ...+....+..
T Consensus 183 ~~~l~i~D~~-g~~~~~lt~~~~--------~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~-g~~~~l~~~~g~~-- 250 (433)
T PRK04922 183 RYALQVADSD-GYNPQTILRSAE--------PILSPAWSPDGKKLAYVSFERGRSAIYVQDLAT-GQRELVASFRGIN-- 250 (433)
T ss_pred eEEEEEECCC-CCCceEeecCCC--------ccccccCCCCCCEEEEEecCCCCcEEEEEECCC-CCEEEeccCCCCc--
Confidence 3579999985 555566654432 1222 345688999987543 588999876 5 22222222211
Q ss_pred CceEEEEeCCCceeeEEEEeeCCC--eEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEEEc
Q 046773 237 DGVLIDFTGCSRYWVGLYAGLAGR--AFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVACT 312 (453)
Q Consensus 237 ~~~~v~Fs~dg~~~~~LaSgS~D~--tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~vas~ 312 (453)
..++|+|||+.+ +++.+.++ .|.+||+++++.. .+..+......+.|+|++. +.++.
T Consensus 251 --~~~~~SpDG~~l--~~~~s~~g~~~Iy~~d~~~g~~~---------------~lt~~~~~~~~~~~spDG~~l~f~sd 311 (433)
T PRK04922 251 --GAPSFSPDGRRL--ALTLSRDGNPEIYVMDLGSRQLT---------------RLTNHFGIDTEPTWAPDGKSIYFTSD 311 (433)
T ss_pred --cCceECCCCCEE--EEEEeCCCCceEEEEECCCCCeE---------------ECccCCCCccceEECCCCCEEEEEEC
Confidence 136899999974 34445444 6999999998732 1223333344578888764 33343
Q ss_pred C-Cc--EEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEE
Q 046773 313 S-SR--VITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNV 389 (453)
Q Consensus 313 d-~t--IrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~ 389 (453)
. +. |.++|+.+++. .++..++......+++|+|+.++..+.++ +...+.+|+..+++.. .++. .......
T Consensus 312 ~~g~~~iy~~dl~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~----~~~~I~v~d~~~g~~~-~Lt~-~~~~~~p 384 (433)
T PRK04922 312 RGGRPQIYRVAASGGSA-ERLTFQGNYNARASVSPDGKKIAMVHGSG----GQYRIAVMDLSTGSVR-TLTP-GSLDESP 384 (433)
T ss_pred CCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEECCC----CceeEEEEECCCCCeE-ECCC-CCCCCCc
Confidence 2 33 66778877653 22222222222357899999887765533 1236888998887644 3332 2234456
Q ss_pred EEeeCCCeEEEEeC----CeEEEEECCCCeEEEEecccCC
Q 046773 390 MGCMNQGYALMCVE----GVIRVWEVEGGEYMYSFRERIG 425 (453)
Q Consensus 390 ~~~~~~~~lls~s~----~tIrlWD~~tG~~l~tL~gh~~ 425 (453)
.+++|+++++..+. ..|.++|+. |+..+.+..+.+
T Consensus 385 ~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g 423 (433)
T PRK04922 385 SFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADG 423 (433)
T ss_pred eECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCC
Confidence 78999998876553 568888885 445555554433
No 187
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.11 E-value=4.8e-09 Score=106.22 Aligned_cols=188 Identities=10% Similarity=0.105 Sum_probs=136.3
Q ss_pred EEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc-EEecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEEEcC-Cc
Q 046773 240 LIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE-VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVACTS-SR 315 (453)
Q Consensus 240 ~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~-~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~vas~d-~t 315 (453)
+|.|+|.-.. |.+++.|+++||+-+.... .+. +.+.=-..|+.+.+|.|++. +.+++. .-
T Consensus 218 sv~FHp~~pl---llvaG~d~~lrifqvDGk~N~~l-------------qS~~l~~fPi~~a~f~p~G~~~i~~s~rrky 281 (514)
T KOG2055|consen 218 SVQFHPTAPL---LLVAGLDGTLRIFQVDGKVNPKL-------------QSIHLEKFPIQKAEFAPNGHSVIFTSGRRKY 281 (514)
T ss_pred EEEecCCCce---EEEecCCCcEEEEEecCccChhh-------------eeeeeccCccceeeecCCCceEEEecccceE
Confidence 4889998774 7789999999999986554 110 11111136788889998775 333333 45
Q ss_pred EEEEECCCCceEEE--EeeccCC-eEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEe
Q 046773 316 VITFDLRNQGMVLG--ERGYGRG-LYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGC 392 (453)
Q Consensus 316 IrlWDl~t~~~~~~--~~g~~~~-~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~ 392 (453)
...|||.+.+..+. ..|+.+. ..-..++++++.++.++..| -|.|--..|++.+.++...+ .+..+.|+
T Consensus 282 ~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G-------~I~lLhakT~eli~s~KieG-~v~~~~fs 353 (514)
T KOG2055|consen 282 LYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG-------HIHLLHAKTKELITSFKIEG-VVSDFTFS 353 (514)
T ss_pred EEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCc-------eEEeehhhhhhhhheeeecc-EEeeEEEe
Confidence 78999999764322 2344321 12234678889999999999 88888888888888887543 47788899
Q ss_pred eCCCeEEEEeC-CeEEEEECCCCeEEEEeccc--CCceEEEEecCCCEEEEE-eCCcEEEEec
Q 046773 393 MNQGYALMCVE-GVIRVWEVEGGEYMYSFRER--IGEEVIAFVGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 393 ~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh--~~~~V~a~s~d~~~lasg-~D~~IklWDl 451 (453)
.+++.++++++ |.|.+||+.+..|++++..- ....-.+.++++.++|+| .-|-|.|+|.
T Consensus 354 Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~ 416 (514)
T KOG2055|consen 354 SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDG 416 (514)
T ss_pred cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEecc
Confidence 99999888877 99999999999999998522 112122677999999999 7799999984
No 188
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.10 E-value=3.1e-08 Score=104.01 Aligned_cols=199 Identities=12% Similarity=0.010 Sum_probs=119.3
Q ss_pred CEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEee---CCCeEEEeeCCCCcEEecccccCCcceeeeee
Q 046773 213 DIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGL---AGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRM 289 (453)
Q Consensus 213 tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS---~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~ 289 (453)
.|.++|.++...+.++.+...+. ...|+|||+.+ +..+ .+..|.+||+++|+.. .
T Consensus 183 ~l~~~d~dg~~~~~lt~~~~~v~----~p~wSpDG~~l---ay~s~~~g~~~i~~~dl~~g~~~---------------~ 240 (435)
T PRK05137 183 RLAIMDQDGANVRYLTDGSSLVL----TPRFSPNRQEI---TYMSYANGRPRVYLLDLETGQRE---------------L 240 (435)
T ss_pred EEEEECCCCCCcEEEecCCCCeE----eeEECCCCCEE---EEEEecCCCCEEEEEECCCCcEE---------------E
Confidence 46666665411344444433332 47899999973 3333 3578999999998731 1
Q ss_pred eeeeccceeEEEEcCCce--EEE-EcCC--cEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcce
Q 046773 290 LTEFTEFVGRVRVTSHES--AVA-CTSS--RVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRL 364 (453)
Q Consensus 290 l~~h~~~v~~v~~s~~~~--~va-s~d~--tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~ 364 (453)
+..+...+...+++|++. +.+ +.++ .|.+||++++.. .++..+.......+++|+|+.++..+.... ...
T Consensus 241 l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g----~~~ 315 (435)
T PRK05137 241 VGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSG----SPQ 315 (435)
T ss_pred eecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCC----CCe
Confidence 223334556678898874 223 3333 488889998754 333322222233578899998887764320 125
Q ss_pred EEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC----CeEEEEECCCCeEEEEec-ccCCceEEEEecCCCEEE
Q 046773 365 AIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE----GVIRVWEVEGGEYMYSFR-ERIGEEVIAFVGDDRHVA 439 (453)
Q Consensus 365 i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~----~tIrlWD~~tG~~l~tL~-gh~~~~V~a~s~d~~~la 439 (453)
+.+++.++++ +..++..+..+....++|++++++..+. ..|.+||+.++.. +.+. ++... --+|+|||+.|+
T Consensus 316 Iy~~d~~g~~-~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~~~~~-~p~~spDG~~i~ 392 (435)
T PRK05137 316 LYVMNADGSN-PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSGFLVE-GPTWAPNGRVIM 392 (435)
T ss_pred EEEEECCCCC-eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCCCCCC-CCeECCCCCEEE
Confidence 6666776554 4455544444556778999999886643 4788999876543 3342 22111 127899999887
Q ss_pred EE
Q 046773 440 AS 441 (453)
Q Consensus 440 sg 441 (453)
..
T Consensus 393 ~~ 394 (435)
T PRK05137 393 FF 394 (435)
T ss_pred EE
Confidence 54
No 189
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=2.7e-09 Score=107.04 Aligned_cols=194 Identities=9% Similarity=0.137 Sum_probs=122.5
Q ss_pred EEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEc-CCcEEE
Q 046773 240 LIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACT-SSRVIT 318 (453)
Q Consensus 240 ~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~-d~tIrl 318 (453)
.|+|++||.. |++|..|+++|||+..+-++. .....|...|..+.|+|++.++++- ....+|
T Consensus 149 ~vaf~~~gs~---latgg~dg~lRv~~~Ps~~t~--------------l~e~~~~~eV~DL~FS~dgk~lasig~d~~~V 211 (398)
T KOG0771|consen 149 VVAFNGDGSK---LATGGTDGTLRVWEWPSMLTI--------------LEEIAHHAEVKDLDFSPDGKFLASIGADSARV 211 (398)
T ss_pred EEEEcCCCCE---eeeccccceEEEEecCcchhh--------------hhhHhhcCccccceeCCCCcEEEEecCCceEE
Confidence 5899999885 899999999999997654421 1134566889999999999766653 238999
Q ss_pred EECCCCceEEEEeecc-CCeEEEE-EEecC--CEE-EEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEee
Q 046773 319 FDLRNQGMVLGERGYG-RGLYVTS-VDVNA--EAY-IVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCM 393 (453)
Q Consensus 319 WDl~t~~~~~~~~g~~-~~~~v~~-~~~~g--~~l-~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~ 393 (453)
||++++-++.+..... ....-.| |..++ +.| +.++.....--.-..+.+|+.+..-...+.....+.+.++..++
T Consensus 212 W~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~ 291 (398)
T KOG0771|consen 212 WSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD 291 (398)
T ss_pred EEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC
Confidence 9999986554332111 0111111 32222 222 22221110000001345565542111122222233577888888
Q ss_pred CCCeEEEEeC-CeEEEEECCCCeEEEEec-ccCCceEE--EEecCCCEEEEE-eCCcEEEEec
Q 046773 394 NQGYALMCVE-GVIRVWEVEGGEYMYSFR-ERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 394 ~~~~lls~s~-~tIrlWD~~tG~~l~tL~-gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl 451 (453)
+|++++.++- |.|-|.++.+=++++-.+ .|... |+ .|+||.+.+++- .|..+.|-.+
T Consensus 292 dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~-VT~ltF~Pdsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 292 DGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGF-VTGLTFSPDSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred CCcEEEEeccCCcEEEEEeceeeeeEeehhhheee-eeeEEEcCCcCcccccccCCceeEEEE
Confidence 9999887776 999999999988887664 56665 88 789999999877 7877776544
No 190
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.09 E-value=8.1e-08 Score=99.55 Aligned_cols=179 Identities=12% Similarity=0.050 Sum_probs=108.1
Q ss_pred EEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEEEc-C--C
Q 046773 240 LIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVACT-S--S 314 (453)
Q Consensus 240 ~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~vas~-d--~ 314 (453)
..+|+|||++++.........+|.+||+++++... +..+...+.+++|+|++. +.+.. + .
T Consensus 194 ~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~---------------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 258 (417)
T TIGR02800 194 SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK---------------VASFPGMNGAPAFSPDGSKLAVSLSKDGNP 258 (417)
T ss_pred cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE---------------eecCCCCccceEECCCCCEEEEEECCCCCc
Confidence 36899999984322222223589999999986211 112233455678888763 33332 2 3
Q ss_pred cEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeC
Q 046773 315 RVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMN 394 (453)
Q Consensus 315 tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~ 394 (453)
.|.+||+.++.. ..+..+.....-..++++++.++..+..+. ...+.+++.++++ ...+..+........++++
T Consensus 259 ~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g----~~~iy~~d~~~~~-~~~l~~~~~~~~~~~~spd 332 (417)
T TIGR02800 259 DIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGG----SPQIYMMDADGGE-VRRLTFRGGYNASPSWSPD 332 (417)
T ss_pred cEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCC----CceEEEEECCCCC-EEEeecCCCCccCeEECCC
Confidence 699999998753 222222211112467888988877665330 1145566666654 3445555555567788999
Q ss_pred CCeEEEEeC----CeEEEEECCCCeEEEEecccCCceEE-EEecCCCEEEEE
Q 046773 395 QGYALMCVE----GVIRVWEVEGGEYMYSFRERIGEEVI-AFVGDDRHVAAS 441 (453)
Q Consensus 395 ~~~lls~s~----~tIrlWD~~tG~~l~tL~gh~~~~V~-a~s~d~~~lasg 441 (453)
+++++.++. ..|.+||+.++.. ..+...... .. +|+||++.|+..
T Consensus 333 g~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~-~~p~~spdg~~l~~~ 382 (417)
T TIGR02800 333 GDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDTGLD-ESPSFAPNGRMILYA 382 (417)
T ss_pred CCEEEEEEccCCceEEEEEeCCCCCe-EEccCCCCC-CCceECCCCCEEEEE
Confidence 998886654 3899999998754 333322211 22 789999988766
No 191
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.06 E-value=1.3e-08 Score=108.86 Aligned_cols=239 Identities=15% Similarity=0.120 Sum_probs=142.9
Q ss_pred EEEEEecC---CEEEEEeCCCcEEEEECCCCeE--EEEecCCCCCccccccceEEEEEE----cCCeEEEEeCCCCEEEE
Q 046773 147 CRCLTLSD---LYLACGFADGAVRLFDLTTRLH--VRTFRPQHSDRLGQFSRAVSGIII----TDSQLIFATLDGDIHVA 217 (453)
Q Consensus 147 v~~lafs~---~~LaSGS~D~TIrlWD~~tg~~--~~tl~gh~~~~~~~~s~~V~~i~f----~g~~LasgS~D~tIkvW 217 (453)
|+|+.|++ .+||.|.++|.|-+||+..+.. +..+..+.. .+...|.++.. .+..++|+|.||.|.-|
T Consensus 245 v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~----sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 245 VTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEV----SHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred eeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccc----cCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 78999875 6999999999999999988876 333332211 12234555543 24569999999999999
Q ss_pred EeecCCcceEEe-------eec---ceecCceEEEEeCCCceeeEEEEeeCCCeEEE---eeCCCCc--EEecccccCCc
Q 046773 218 VIDDVANETRTA-------HFG---SVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHI---WDRQAEE--VFVGGDLTDHN 282 (453)
Q Consensus 218 d~~~~g~~~~~~-------~~~---~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrv---WD~~tg~--~~~g~~l~~~~ 282 (453)
+++--- .+..+ |.+ .-......+.|.+--.. .++.|+.+|.|-- ++...+. .+.++
T Consensus 321 ~~~~l~-~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~--~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~------ 391 (555)
T KOG1587|consen 321 DTDMLS-LPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN--HFIVGTEEGKVYKGCRKGYTPAPEVSYKGH------ 391 (555)
T ss_pred eccccc-cchhhcccccccccccccccccceeeEeeccCCCc--eEEEEcCCcEEEEEeccCCccccccccccc------
Confidence 876410 11111 100 00001123677665432 3667888887754 2333222 22322
Q ss_pred ceeeeeeeeeeccceeEEEEcC--CceEEEEcCCcEEEEECCCCceEEE-EeeccCCeEEEEEEecCC---EEEEEeCCC
Q 046773 283 TVMGWRMLTEFTEFVGRVRVTS--HESAVACTSSRVITFDLRNQGMVLG-ERGYGRGLYVTSVDVNAE---AYIVVENRE 356 (453)
Q Consensus 283 ~v~~w~~l~~h~~~v~~v~~s~--~~~~vas~d~tIrlWDl~t~~~~~~-~~g~~~~~~v~~~~~~g~---~l~s~s~dg 356 (453)
.+...|.++|.+|.++| ...++++.|-+||||........+. ..-+ ..+|.++..++. .++++..+|
T Consensus 392 -----~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~--~~~v~~vaWSptrpavF~~~d~~G 464 (555)
T KOG1587|consen 392 -----STFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSS--PDYVTDVAWSPTRPAVFATVDGDG 464 (555)
T ss_pred -----ccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhc--cceeeeeEEcCcCceEEEEEcCCC
Confidence 13456778999998875 3467777799999998773333322 2222 234666665543 467778888
Q ss_pred ccccCcceEEEEEcCC--CeeEEEEEecCCCeeEEEEeeCCCeEEEEeC--CeEEEEECCC
Q 046773 357 LENQNRRLAIVRRVDT--FEEVCRFSLRADRNVNVMGCMNQGYALMCVE--GVIRVWEVEG 413 (453)
Q Consensus 357 ~~~~~~~~i~Iw~~~t--g~~v~~l~~~~~~v~~~~~~~~~~~lls~s~--~tIrlWD~~t 413 (453)
++-|||+.. -+++.+.... ..+...++.+..+.++++++ |++.++++..
T Consensus 465 -------~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 465 -------NLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred -------ceehhhhhccccCCccccccc-ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 999999763 3444444333 22333334444344455554 9999999963
No 192
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.05 E-value=1.1e-08 Score=112.16 Aligned_cols=228 Identities=14% Similarity=0.163 Sum_probs=127.7
Q ss_pred eEEEEeCCCCEEEEEeecCCcceEEe-eecceecCceE-EEE-eCCCceeeEEEEeeCCCeEEEee-CCCC-cEEecccc
Q 046773 204 QLIFATLDGDIHVAVIDDVANETRTA-HFGSVMDDGVL-IDF-TGCSRYWVGLYAGLAGRAFHIWD-RQAE-EVFVGGDL 278 (453)
Q Consensus 204 ~LasgS~D~tIkvWd~~~~g~~~~~~-~~~~v~~~~~~-v~F-s~dg~~~~~LaSgS~D~tIrvWD-~~tg-~~~~g~~l 278 (453)
.++++..-.+|+|||++. + ..+.+ +.+......+. +.| +.+.. ..|.+||.|++||||+ ..++ ..
T Consensus 1078 ~i~~ad~r~~i~vwd~e~-~-~~l~~F~n~~~~~t~Vs~l~liNe~D~--aLlLtas~dGvIRIwk~y~~~~~~------ 1147 (1387)
T KOG1517|consen 1078 QIAAADDRERIRVWDWEK-G-RLLNGFDNGAFPDTRVSDLELINEQDD--ALLLTASSDGVIRIWKDYADKWKK------ 1147 (1387)
T ss_pred eeEEcCCcceEEEEeccc-C-ceeccccCCCCCCCccceeeeecccch--hheeeeccCceEEEecccccccCC------
Confidence 455444345689999987 4 33332 22221111111 111 11122 2477899999999995 4443 11
Q ss_pred cCCcceeeeeeeeeecc---ceeEEEEc---CCceEEEEcC-CcEEEEECCCCceEEEEeeccCCeEEEEEEec---CCE
Q 046773 279 TDHNTVMGWRMLTEFTE---FVGRVRVT---SHESAVACTS-SRVITFDLRNQGMVLGERGYGRGLYVTSVDVN---AEA 348 (453)
Q Consensus 279 ~~~~~v~~w~~l~~h~~---~v~~v~~s---~~~~~vas~d-~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~---g~~ 348 (453)
++-|..|..|.++.. --+ +-++ ..+.++.++| ..|||||+..-.++.-.. .+....+++++.+ |+.
T Consensus 1148 --~eLVTaw~~Ls~~~~~~r~~~-~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP-~~s~t~vTaLS~~~~~gn~ 1223 (1387)
T KOG1517|consen 1148 --PELVTAWSSLSDQLPGARGTG-LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIP-YGSSTLVTALSADLVHGNI 1223 (1387)
T ss_pred --ceeEEeeccccccCccCCCCC-eeeehhhhCCeEEecCCeeEEEEEecccceeEeecc-cCCCccceeecccccCCce
Confidence 112333443333310 011 1111 1234444555 679999999765544331 2234456777644 688
Q ss_pred EEEEeCCCccccCcceEEEEEcCCCe---eEEEEEecCCC--eeEEEEeeCC-CeEEEEeC-CeEEEEECCCCeEE--EE
Q 046773 349 YIVVENRELENQNRRLAIVRRVDTFE---EVCRFSLRADR--NVNVMGCMNQ-GYALMCVE-GVIRVWEVEGGEYM--YS 419 (453)
Q Consensus 349 l~s~s~dg~~~~~~~~i~Iw~~~tg~---~v~~l~~~~~~--v~~~~~~~~~-~~lls~s~-~tIrlWD~~tG~~l--~t 419 (453)
++.|-+|| .+|++|..... .++....|.+. |..+.+-++| +.+++++. |.|++||+...... -+
T Consensus 1224 i~AGfaDG-------svRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~ 1296 (1387)
T KOG1517|consen 1224 IAAGFADG-------SVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLT 1296 (1387)
T ss_pred EEEeecCC-------ceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccce
Confidence 99999999 99999976542 34444555444 4444444433 35677776 99999999974221 22
Q ss_pred ecccC--CceEEE--EecCCCEEEEEeCCcEEEEecC
Q 046773 420 FRERI--GEEVIA--FVGDDRHVAASCGTNIHLWDFG 452 (453)
Q Consensus 420 L~gh~--~~~V~a--~s~d~~~lasg~D~~IklWDl~ 452 (453)
...|. |..+++ +.++..+||||+-+.|+||++.
T Consensus 1297 iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1297 IVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLS 1333 (1387)
T ss_pred eeeccccCccceeeeeccCCCeeeecCcceEEEEecC
Confidence 23343 221443 4578899999944999999974
No 193
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.05 E-value=3.9e-08 Score=106.26 Aligned_cols=266 Identities=14% Similarity=0.122 Sum_probs=155.7
Q ss_pred EecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--C---CeEEEEeCCCCEEEEEeecCC
Q 046773 151 TLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--D---SQLIFATLDGDIHVAVIDDVA 223 (453)
Q Consensus 151 afs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g---~~LasgS~D~tIkvWd~~~~g 223 (453)
.||. ++|.. -.+.+|+|+.+.||+|+++|.+|.. .+.++.+. . ..++++|.||+|+|||+.. +
T Consensus 23 vfSnD~k~l~~-~~~~~V~VyS~~Tg~~i~~l~~~~a--------~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~-~ 92 (792)
T KOG1963|consen 23 VFSNDAKFLFL-CTGNFVKVYSTATGECITSLEDHTA--------PLTSVIVLPSSENANYLIVCSLDGTIRVWDWSD-G 92 (792)
T ss_pred ccccCCcEEEE-eeCCEEEEEecchHhhhhhcccccC--------ccceeeecCCCccceEEEEEecCccEEEecCCC-c
Confidence 3554 45543 4467999999999999999998765 23444443 2 3577999999999999987 3
Q ss_pred --cceEEeeecceecCceEEEEeCCCce-------eeEEEEeeCC--CeEEEeeCCCCcEEecccccCCcceeeeeeeee
Q 046773 224 --NETRTAHFGSVMDDGVLIDFTGCSRY-------WVGLYAGLAG--RAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTE 292 (453)
Q Consensus 224 --~~~~~~~~~~v~~~~~~v~Fs~dg~~-------~~~LaSgS~D--~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~ 292 (453)
+.+...+.. +..-....+|..+... .-.+.+++.+ ++++=..+.+-.... . ..+.+
T Consensus 93 ~Llkt~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~-------~-----d~~~~ 159 (792)
T KOG1963|consen 93 ELLKTFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAK-------G-----DFLKE 159 (792)
T ss_pred EEEEEEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccc-------h-----hhhhh
Confidence 233222111 0000000111111100 0001111111 111111111110000 0 12333
Q ss_pred eccceeEEEEcCCceEE-EEcCCcEEEEECCCCceEEEE-----eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEE
Q 046773 293 FTEFVGRVRVTSHESAV-ACTSSRVITFDLRNQGMVLGE-----RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAI 366 (453)
Q Consensus 293 h~~~v~~v~~s~~~~~v-as~d~tIrlWDl~t~~~~~~~-----~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~ 366 (453)
|.. -.++.+++.+.+. ...+..+-+|+..++.. ++. +-|.-...+.+++|.++.++++..|| .|.
T Consensus 160 ~~~-~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~-~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dG-------rI~ 230 (792)
T KOG1963|consen 160 HQE-PKSIVDNNSGEFKGIVHMCKIHIYFVPKHTK-HTSSRDITVHHTFNITCVALSPNERYLAAGDSDG-------RIL 230 (792)
T ss_pred hcC-CccEEEcCCceEEEEEEeeeEEEEEecccce-eeccchhhhhhcccceeEEeccccceEEEeccCC-------cEE
Confidence 322 2345666655433 35667888999987541 111 23433335567888888999998899 788
Q ss_pred EEEcCC----CeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEE
Q 046773 367 VRRVDT----FEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVA 439 (453)
Q Consensus 367 Iw~~~t----g~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~la 439 (453)
||.--. ....+.+-.|.+.|..+.|+++|.++++++- +.+-+|.++|++ .+-|+ .-+..|. .++||+...+
T Consensus 231 vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLP-RLgs~I~~i~vS~ds~~~s 308 (792)
T KOG1963|consen 231 VWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLP-RLGSPILHIVVSPDSDLYS 308 (792)
T ss_pred EEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-ccccc-ccCCeeEEEEEcCCCCeEE
Confidence 884221 1234567788888999999999999999887 999999999998 23333 3344365 6789998776
Q ss_pred EE-eCCcEEEEe
Q 046773 440 AS-CGTNIHLWD 450 (453)
Q Consensus 440 sg-~D~~IklWD 450 (453)
.. .|+.|.|-.
T Consensus 309 l~~~DNqI~li~ 320 (792)
T KOG1963|consen 309 LVLEDNQIHLIK 320 (792)
T ss_pred EEecCceEEEEe
Confidence 66 899888753
No 194
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.03 E-value=6.1e-08 Score=101.66 Aligned_cols=174 Identities=10% Similarity=-0.018 Sum_probs=103.8
Q ss_pred EEEEeCCCceeeEEEEeeC---CCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEE-EcC
Q 046773 240 LIDFTGCSRYWVGLYAGLA---GRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVA-CTS 313 (453)
Q Consensus 240 ~v~Fs~dg~~~~~LaSgS~---D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~va-s~d 313 (453)
..+|+|||+. |+..+. ...|.+||+.+|+... +......+...+++|++. +.+ +.+
T Consensus 200 ~p~wSPDG~~---la~~s~~~~~~~I~~~dl~~g~~~~---------------l~~~~g~~~~~~~SPDG~~la~~~~~~ 261 (427)
T PRK02889 200 SPAWSPDGTK---LAYVSFESKKPVVYVHDLATGRRRV---------------VANFKGSNSAPAWSPDGRTLAVALSRD 261 (427)
T ss_pred cceEcCCCCE---EEEEEccCCCcEEEEEECCCCCEEE---------------eecCCCCccceEECCCCCEEEEEEccC
Confidence 3789999997 444443 3469999999987321 111223345678898874 323 345
Q ss_pred CcEEEE--ECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCC-CccccCcceEEEEEcC--CCeeEEEEEecCCCeeE
Q 046773 314 SRVITF--DLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENR-ELENQNRRLAIVRRVD--TFEEVCRFSLRADRNVN 388 (453)
Q Consensus 314 ~tIrlW--Dl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~d-g~~~~~~~~i~Iw~~~--tg~~v~~l~~~~~~v~~ 388 (453)
+..+|| |+.++. +.++..+.......+++++|+.++..+.. + ...||..+ +++ ...++........
T Consensus 262 g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g-------~~~Iy~~~~~~g~-~~~lt~~g~~~~~ 332 (427)
T PRK02889 262 GNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGG-------APQIYRMPASGGA-AQRVTFTGSYNTS 332 (427)
T ss_pred CCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCC-------CcEEEEEECCCCc-eEEEecCCCCcCc
Confidence 655555 555543 33332222112235689999988776643 4 45677554 443 3344444333445
Q ss_pred EEEeeCCCeEEEEeC----CeEEEEECCCCeEEEEecccCCceEEEEecCCCEEEEE
Q 046773 389 VMGCMNQGYALMCVE----GVIRVWEVEGGEYMYSFRERIGEEVIAFVGDDRHVAAS 441 (453)
Q Consensus 389 ~~~~~~~~~lls~s~----~tIrlWD~~tG~~l~tL~gh~~~~V~a~s~d~~~lasg 441 (453)
..++|++++++.++. ..|.+||+.+++......+..+. --+++||++.|+.+
T Consensus 333 ~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~-~p~~spdg~~l~~~ 388 (427)
T PRK02889 333 PRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDE-SPSFAPNGRYILYA 388 (427)
T ss_pred eEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCcc-CceECCCCCEEEEE
Confidence 678999999886654 37999999998754322222121 22789999988765
No 195
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.03 E-value=4.9e-08 Score=96.76 Aligned_cols=171 Identities=16% Similarity=0.206 Sum_probs=127.0
Q ss_pred CeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEcCCcEEEEECCCCceEEEE-eeccCCeE
Q 046773 260 RAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSSRVITFDLRNQGMVLGE-RGYGRGLY 338 (453)
Q Consensus 260 ~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~~-~g~~~~~~ 338 (453)
+.+||-+++.+.++.-. -...+|-+|++.-+. ++.+-...|-|+|+++.+.+++. .-..+...
T Consensus 68 r~Lkv~~~Kk~~~ICe~---------------~fpt~IL~VrmNr~R-LvV~Lee~IyIydI~~MklLhTI~t~~~n~~g 131 (391)
T KOG2110|consen 68 RKLKVVHFKKKTTICEI---------------FFPTSILAVRMNRKR-LVVCLEESIYIYDIKDMKLLHTIETTPPNPKG 131 (391)
T ss_pred ceEEEEEcccCceEEEE---------------ecCCceEEEEEccce-EEEEEcccEEEEecccceeehhhhccCCCccc
Confidence 44899999887733210 123568889998654 44466566999999999888875 22122333
Q ss_pred EEEEEecCC--EEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-C-eEEEEECCCC
Q 046773 339 VTSVDVNAE--AYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-G-VIRVWEVEGG 414 (453)
Q Consensus 339 v~~~~~~g~--~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~-tIrlWD~~tG 414 (453)
+.+++++.+ .++--++ .+.+.+.|||..+-+.+..+..|.+.+..++|+++|..++++|+ | .|||..+.+|
T Consensus 132 l~AlS~n~~n~ylAyp~s-----~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G 206 (391)
T KOG2110|consen 132 LCALSPNNANCYLAYPGS-----TTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG 206 (391)
T ss_pred eEeeccCCCCceEEecCC-----CCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc
Confidence 567776654 5543221 11238999999999999999999999999999999999999998 5 5699999999
Q ss_pred eEEEEecccCCceEE----EEecCCCEEEEE-eCCcEEEEecC
Q 046773 415 EYMYSFRERIGEEVI----AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 415 ~~l~tL~gh~~~~V~----a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
+.++.|+--.-. ++ +|+||+++|+++ +-+||+|+.++
T Consensus 207 ~kl~eFRRG~~~-~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 207 QKLYEFRRGTYP-VSIYSLSFSPDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred cEeeeeeCCcee-eEEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence 999999643333 44 788999999877 78899999875
No 196
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.02 E-value=8.5e-08 Score=106.70 Aligned_cols=239 Identities=17% Similarity=0.207 Sum_probs=130.7
Q ss_pred EEEEEecC---CEEEEEeCCCcEEEEECCC-------CeEEEEecCCCCCccccccceEEE--EEEcCCeEEEEeCCCCE
Q 046773 147 CRCLTLSD---LYLACGFADGAVRLFDLTT-------RLHVRTFRPQHSDRLGQFSRAVSG--IIITDSQLIFATLDGDI 214 (453)
Q Consensus 147 v~~lafs~---~~LaSGS~D~TIrlWD~~t-------g~~~~tl~gh~~~~~~~~s~~V~~--i~f~g~~LasgS~D~tI 214 (453)
|..++-+. .++||||.|||||+||... -++..|+.. .+ ..+.. .++.++.+|.++.||.|
T Consensus 1051 v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~-~~-------sr~~~vt~~~~~~~~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1051 VIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP-EG-------SRVEKVTMCGNGDQFAVSTKDGSV 1122 (1431)
T ss_pred ccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEec-cC-------CceEEEEeccCCCeEEEEcCCCeE
Confidence 44566553 5999999999999999642 233444421 11 13333 45678999999999999
Q ss_pred EEEEeecC-C--cceEEeeecceecCceEE---EEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeee
Q 046773 215 HVAVIDDV-A--NETRTAHFGSVMDDGVLI---DFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWR 288 (453)
Q Consensus 215 kvWd~~~~-g--~~~~~~~~~~v~~~~~~v---~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~ 288 (453)
++-.++.. . ....++..-....++..| +|....+.. .|+-+..-+.|-.||+++...+ |.
T Consensus 1123 ~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~-~lvy~T~~~~iv~~D~r~~~~~-------------w~ 1188 (1431)
T KOG1240|consen 1123 RVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSH-VLVYATDLSRIVSWDTRMRHDA-------------WR 1188 (1431)
T ss_pred EEEEccccccccceeeeeecccccCCCceEEeecccccccce-eEEEEEeccceEEecchhhhhH-------------Hh
Confidence 99888752 1 111111100000112122 333332321 2444455567899999876511 10
Q ss_pred -eeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEE--EEEec-C--CEEEEEeCCCcccc
Q 046773 289 -MLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVT--SVDVN-A--EAYIVVENRELENQ 360 (453)
Q Consensus 289 -~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~--~~~~~-g--~~l~s~s~dg~~~~ 360 (453)
...--.+.|.+++++|.. ++++.+.|.+-+|||+=+..+..- -|.+...+. ++.|- + ...++++..+
T Consensus 1189 lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw-~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~---- 1263 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSW-EHPARAPIRHVWLCPTYPQESVSVSAGSSS---- 1263 (1431)
T ss_pred hhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecc-cCcccCCcceEEeeccCCCCceEEEecccC----
Confidence 001112678899999865 456667789999999865333221 111112222 22222 2 3455555433
Q ss_pred CcceEEEEEcCCCeeEEEEEec-----------------CCCe--eEEEEeeCCCeEEEEeC-CeEEEEECCC
Q 046773 361 NRRLAIVRRVDTFEEVCRFSLR-----------------ADRN--VNVMGCMNQGYALMCVE-GVIRVWEVEG 413 (453)
Q Consensus 361 ~~~~i~Iw~~~tg~~v~~l~~~-----------------~~~v--~~~~~~~~~~~lls~s~-~tIrlWD~~t 413 (453)
-+-+.+|+..+|.+-.++-.. |..+ ....++...+.+++++. ..||.||..+
T Consensus 1264 -~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1264 -NNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred -CCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 127899999999776666443 1100 01111122344555544 8899999875
No 197
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.99 E-value=7.6e-09 Score=98.54 Aligned_cols=252 Identities=14% Similarity=0.063 Sum_probs=145.4
Q ss_pred EEEecCCCCCccccccceEEEEEEc-CCeEEEEeCCCCEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEE
Q 046773 177 VRTFRPQHSDRLGQFSRAVSGIIIT-DSQLIFATLDGDIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLY 254 (453)
Q Consensus 177 ~~tl~gh~~~~~~~~s~~V~~i~f~-g~~LasgS~D~tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~La 254 (453)
...|++|+. .|.++.|+ ..+|.+|+.-|.+++|++.+.. ...++++....+.+ +.--|+++ |.
T Consensus 7 ~fvLRp~~~--------~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~---lq~~p~d~----l~ 71 (323)
T KOG0322|consen 7 FFVLRPHSS--------SVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITN---LQSIPNDS----LD 71 (323)
T ss_pred eeEeccccc--------hheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeec---eeecCCcc----hh
Confidence 456777664 67778887 5679999999999999998722 23333332222211 22224332 55
Q ss_pred EeeCCCeEEEeeCCCCcEEecc-----cc--------cCC-cceee----------ee---------e------eeeecc
Q 046773 255 AGLAGRAFHIWDRQAEEVFVGG-----DL--------TDH-NTVMG----------WR---------M------LTEFTE 295 (453)
Q Consensus 255 SgS~D~tIrvWD~~tg~~~~g~-----~l--------~~~-~~v~~----------w~---------~------l~~h~~ 295 (453)
+=+.|.++.+|++.-+.-..-| ++ ..+ +.... .| + -.+-.+
T Consensus 72 tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klg 151 (323)
T KOG0322|consen 72 TQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLG 151 (323)
T ss_pred hcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccC
Confidence 6788999999998774411111 00 000 00000 00 0 001112
Q ss_pred ceeEEE--Ec-C-CceEEEEc-CCcEEEEECCCCceEEEEe--------eccCCeEEEEEEecC--CEEEEEeCCCcccc
Q 046773 296 FVGRVR--VT-S-HESAVACT-SSRVITFDLRNQGMVLGER--------GYGRGLYVTSVDVNA--EAYIVVENRELENQ 360 (453)
Q Consensus 296 ~v~~v~--~s-~-~~~~vas~-d~tIrlWDl~t~~~~~~~~--------g~~~~~~v~~~~~~g--~~l~s~s~dg~~~~ 360 (453)
.|.+.. +. . .-+++++. ++.|-+||+.++..++.+. -..|...|.+++++. ++=++++.+.
T Consensus 152 svmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~d---- 227 (323)
T KOG0322|consen 152 SVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADD---- 227 (323)
T ss_pred ceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccc----
Confidence 222221 11 1 11344454 5789999999985444321 112233456666552 1112333333
Q ss_pred CcceEEEEEcC--CCeeE--EEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEec
Q 046773 361 NRRLAIVRRVD--TFEEV--CRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVG 433 (453)
Q Consensus 361 ~~~~i~Iw~~~--tg~~v--~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~ 433 (453)
.+.+|+++ ++.+. .++....-++..+..-||++.+++++- +.|||+.-+|.+.|..|.=|.+. |+ +|+|
T Consensus 228 ---kl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsag-vn~vAfsp 303 (323)
T KOG0322|consen 228 ---KLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAG-VNAVAFSP 303 (323)
T ss_pred ---cceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcc-eeEEEeCC
Confidence 55666554 34321 112222334566666677776666554 99999999999999999999988 98 7789
Q ss_pred CCCEEEEE-eCCcEEEEec
Q 046773 434 DDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 434 d~~~lasg-~D~~IklWDl 451 (453)
|-..+|++ .|+.|-||++
T Consensus 304 d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 304 DCELMAAASKDARISLWKL 322 (323)
T ss_pred CCchhhhccCCceEEeeec
Confidence 98899998 9999999996
No 198
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.96 E-value=1.2e-06 Score=89.87 Aligned_cols=266 Identities=13% Similarity=0.133 Sum_probs=154.4
Q ss_pred EecCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCCcceEEee
Q 046773 151 TLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVANETRTAH 230 (453)
Q Consensus 151 afs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g~~~~~~~ 230 (453)
+.+++.+..++.|+.+..+|++||+.+....-. .. ......+.+..++.++.|+.+..+|.++ | ..+..+
T Consensus 102 ~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~-------~~~~p~v~~~~v~v~~~~g~l~a~d~~t-G-~~~W~~ 171 (377)
T TIGR03300 102 GADGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SE-------VLSPPLVANGLVVVRTNDGRLTALDAAT-G-ERLWTY 171 (377)
T ss_pred EEcCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ce-------eecCCEEECCEEEEECCCCeEEEEEcCC-C-ceeeEE
Confidence 345567888889999999999999988765421 11 1111233566777788899999999877 5 221111
Q ss_pred ec--c-e--ecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCC
Q 046773 231 FG--S-V--MDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSH 305 (453)
Q Consensus 231 ~~--~-v--~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~ 305 (453)
.. . + .... ...+. ++ .++.++.++.+...|.++|+.+--.....+........+. ....+..+.++
T Consensus 172 ~~~~~~~~~~~~~-sp~~~-~~----~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~---~~~~~p~~~~~ 242 (377)
T TIGR03300 172 SRVTPALTLRGSA-SPVIA-DG----GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLV---DVDGDPVVDGG 242 (377)
T ss_pred ccCCCceeecCCC-CCEEE-CC----EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhh---ccCCccEEECC
Confidence 10 0 0 0000 01111 12 2567788899999999999843100000000000000000 00111223445
Q ss_pred ceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEE-ecCC
Q 046773 306 ESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFS-LRAD 384 (453)
Q Consensus 306 ~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~-~~~~ 384 (453)
.+++++.++.+..+|+++|+.+....... ......+++.+..++.++ .+..+|..+|+.+-... ....
T Consensus 243 ~vy~~~~~g~l~a~d~~tG~~~W~~~~~~----~~~p~~~~~~vyv~~~~G-------~l~~~d~~tG~~~W~~~~~~~~ 311 (377)
T TIGR03300 243 QVYAVSYQGRVAALDLRSGRVLWKRDASS----YQGPAVDDNRLYVTDADG-------VVVALDRRSGSELWKNDELKYR 311 (377)
T ss_pred EEEEEEcCCEEEEEECCCCcEEEeeccCC----ccCceEeCCEEEEECCCC-------eEEEEECCCCcEEEccccccCC
Confidence 56666778899999999987655432111 123445677888888888 89999999998765542 1111
Q ss_pred CeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEEeCCcEEEE
Q 046773 385 RNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAASCGTNIHLW 449 (453)
Q Consensus 385 ~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg~D~~IklW 449 (453)
...+.+ ..+++++.++. +.|.++|..+|+.+..++-+... ++ -...+++.++.+.||+|..+
T Consensus 312 ~~ssp~--i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~-~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 312 QLTAPA--VVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSG-IASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred ccccCE--EECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCc-cccCCEEECCEEEEEeCCceEEEe
Confidence 111111 13566666665 99999999999999988766544 43 23346655554488888764
No 199
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.96 E-value=1.3e-09 Score=113.56 Aligned_cols=132 Identities=11% Similarity=0.207 Sum_probs=99.6
Q ss_pred EcCCcEEEEECCCCceEEE--EeeccCCeEEEEEE---ecCCEEEEEeCCCccccCcceEEEEEcCCC-------eeEEE
Q 046773 311 CTSSRVITFDLRNQGMVLG--ERGYGRGLYVTSVD---VNAEAYIVVENRELENQNRRLAIVRRVDTF-------EEVCR 378 (453)
Q Consensus 311 s~d~tIrlWDl~t~~~~~~--~~g~~~~~~v~~~~---~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg-------~~v~~ 378 (453)
+..+.|-|+++...+.+-- ..+-..+..|..|. ||..+|+++..|+ .|+||.+.++ ++-..
T Consensus 600 g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg-------~i~lWr~~a~gl~e~~~tPe~~ 672 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDG-------QINLWRLTANGLPENEMTPEKI 672 (1012)
T ss_pred CCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCc-------eEEEEEeccCCCCcccCCccee
Confidence 3457899999986554321 11112234566665 5568999999999 9999987753 23445
Q ss_pred EEecCCCeeEEEEeeCC-CeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEe
Q 046773 379 FSLRADRNVNVMGCMNQ-GYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWD 450 (453)
Q Consensus 379 l~~~~~~v~~~~~~~~~-~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWD 450 (453)
++.|.+.+.++.|+|-- ..|++++. .||+|||+++++.-..|.||++. |. +++|||+++|+- .|++|++++
T Consensus 673 lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdq-If~~AWSpdGr~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 673 LTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQ-IFGIAWSPDGRRIATVCKDGTLRVYE 748 (1012)
T ss_pred eecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCc-eeEEEECCCCcceeeeecCceEEEeC
Confidence 78888889999998733 23333333 99999999999998899999999 87 778999999998 999999986
No 200
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.94 E-value=1.2e-07 Score=105.62 Aligned_cols=253 Identities=15% Similarity=0.142 Sum_probs=144.4
Q ss_pred EECCCCeEEEEecCCCCCccccccceEEEEEE---cCCeEEEEeCCCCEEEEEeecC-C-cceEE----ee-ecceecCc
Q 046773 169 FDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII---TDSQLIFATLDGDIHVAVIDDV-A-NETRT----AH-FGSVMDDG 238 (453)
Q Consensus 169 WD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f---~g~~LasgS~D~tIkvWd~~~~-g-~~~~~----~~-~~~v~~~~ 238 (453)
|++ +|..+..|..|.. .|..++. +++.++|||.||||||||.... | ..+.+ -+ ++. ..
T Consensus 1034 W~p-~G~lVAhL~Ehs~--------~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~s---r~ 1101 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSS--------AVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGS---RV 1101 (1431)
T ss_pred CCc-cceEeehhhhccc--------cccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCC---ce
Confidence 666 4666766654432 3434443 3578999999999999997541 1 11111 11 111 11
Q ss_pred eEEEEeCCCceeeEEEEeeCCCeEEEeeCCC--CcEEecccccCCcceeeeeeeeeeccce-eEEEEc--CCc-eEEEEc
Q 046773 239 VLIDFTGCSRYWVGLYAGLAGRAFHIWDRQA--EEVFVGGDLTDHNTVMGWRMLTEFTEFV-GRVRVT--SHE-SAVACT 312 (453)
Q Consensus 239 ~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~t--g~~~~g~~l~~~~~v~~w~~l~~h~~~v-~~v~~s--~~~-~~vas~ 312 (453)
..|++.+.|+. +|.|+.|+.|++-++.- .+...+-....++ +... +.| ..-+|. ... .++...
T Consensus 1102 ~~vt~~~~~~~---~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n-------~~~~-g~vv~m~a~~~~~~S~~lvy~T 1170 (1431)
T KOG1240|consen 1102 EKVTMCGNGDQ---FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPN-------LKKD-GVVVSMHAFTAIVQSHVLVYAT 1170 (1431)
T ss_pred EEEEeccCCCe---EEEEcCCCeEEEEEccccccccceeeeeeccc-------ccCC-CceEEeecccccccceeEEEEE
Confidence 23677777775 77889999999999876 2211100000000 0000 111 111121 112 344444
Q ss_pred -CCcEEEEECCCCceEEEEeeccCCeEEE--EEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecC--CCee
Q 046773 313 -SSRVITFDLRNQGMVLGERGYGRGLYVT--SVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRA--DRNV 387 (453)
Q Consensus 313 -d~tIrlWDl~t~~~~~~~~g~~~~~~v~--~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~--~~v~ 387 (453)
-+.|-.||+++...+.+++.......|+ ++++-++.+++|+..| .+-+||+.=+.+++... +| -.++
T Consensus 1171 ~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G-------~l~lWDLRF~~~i~sw~-~P~~~~i~ 1242 (1431)
T KOG1240|consen 1171 DLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRG-------QLVLWDLRFRVPILSWE-HPARAPIR 1242 (1431)
T ss_pred eccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCc-------eEEEEEeecCceeeccc-CcccCCcc
Confidence 4789999999864433322111112344 4677788999999999 99999988666665542 22 2355
Q ss_pred EEEEeeCC---CeEEEE-e-C-CeEEEEECCCCeEEEEecccCCc-------------------eEEEEecCC-CEEEEE
Q 046773 388 NVMGCMNQ---GYALMC-V-E-GVIRVWEVEGGEYMYSFRERIGE-------------------EVIAFVGDD-RHVAAS 441 (453)
Q Consensus 388 ~~~~~~~~---~~lls~-s-~-~tIrlWD~~tG~~l~tL~gh~~~-------------------~V~a~s~d~-~~lasg 441 (453)
.+..|+-. ...+++ + + +.|.+|++++|.|-++|..-.+. .+.+.-+++ ..+.+|
T Consensus 1243 ~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltg 1322 (1431)
T KOG1240|consen 1243 HVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTG 1322 (1431)
T ss_pred eEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeec
Confidence 66666522 333433 3 3 89999999999998888533111 011111233 355667
Q ss_pred -eCCcEEEEecC
Q 046773 442 -CGTNIHLWDFG 452 (453)
Q Consensus 442 -~D~~IklWDl~ 452 (453)
+|..||.||..
T Consensus 1323 gsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1323 GSDMKIRKWDPT 1334 (1431)
T ss_pred CCccceeeccCC
Confidence 99999999964
No 201
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.94 E-value=1.9e-07 Score=97.84 Aligned_cols=225 Identities=10% Similarity=0.043 Sum_probs=128.9
Q ss_pred CCcEEEEECCCCeEEEEecCCCCCccccccceEEE--EEEcCCeEEEEeCCC---CEEEEEeecCC-cceEEeeecceec
Q 046773 163 DGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSG--IIITDSQLIFATLDG---DIHVAVIDDVA-NETRTAHFGSVMD 236 (453)
Q Consensus 163 D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~--i~f~g~~LasgS~D~---tIkvWd~~~~g-~~~~~~~~~~v~~ 236 (453)
...|.+||. +|+..+.+..+.. .+.+ +++||+.|++.+.+. .|.+||+.+ | ...+....+..
T Consensus 175 ~~~L~~~D~-dG~~~~~l~~~~~--------~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~-g~~~~l~~~~g~~-- 242 (427)
T PRK02889 175 RYQLQISDA-DGQNAQSALSSPE--------PIISPAWSPDGTKLAYVSFESKKPVVYVHDLAT-GRRRVVANFKGSN-- 242 (427)
T ss_pred ccEEEEECC-CCCCceEeccCCC--------CcccceEcCCCCEEEEEEccCCCcEEEEEECCC-CCEEEeecCCCCc--
Confidence 356777887 4555556554332 2333 445788999887643 488999887 5 22222121211
Q ss_pred CceEEEEeCCCceeeEEEEeeCCCeEEEeeC--CCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEEEc
Q 046773 237 DGVLIDFTGCSRYWVGLYAGLAGRAFHIWDR--QAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVACT 312 (453)
Q Consensus 237 ~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~--~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~vas~ 312 (453)
...+|+|||+.+ +++.+.|+..+||.+ .+++. ..++.+...+....|+|++. +..+.
T Consensus 243 --~~~~~SPDG~~l--a~~~~~~g~~~Iy~~d~~~~~~---------------~~lt~~~~~~~~~~wSpDG~~l~f~s~ 303 (427)
T PRK02889 243 --SAPAWSPDGRTL--AVALSRDGNSQIYTVNADGSGL---------------RRLTQSSGIDTEPFFSPDGRSIYFTSD 303 (427)
T ss_pred --cceEECCCCCEE--EEEEccCCCceEEEEECCCCCc---------------EECCCCCCCCcCeEEcCCCCEEEEEec
Confidence 247899999973 346677888777754 44442 11223333344567888764 33444
Q ss_pred C-CcEEEEEC--CCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEE
Q 046773 313 S-SRVITFDL--RNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNV 389 (453)
Q Consensus 313 d-~tIrlWDl--~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~ 389 (453)
. +...||.+ .++.. .....++....-.+++|+|+.++..+.++ ....+.+|+.++++.. .++.. ......
T Consensus 304 ~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~----g~~~I~v~d~~~g~~~-~lt~~-~~~~~p 376 (427)
T PRK02889 304 RGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISPDGKLLAYISRVG----GAFKLYVQDLATGQVT-ALTDT-TRDESP 376 (427)
T ss_pred CCCCcEEEEEECCCCce-EEEecCCCCcCceEECCCCCEEEEEEccC----CcEEEEEEECCCCCeE-EccCC-CCccCc
Confidence 2 55666654 44432 22222222222357899999988776554 1226889999887643 33322 234567
Q ss_pred EEeeCCCeEEEEeC--C--eEEEEECCCCeEEEEecccCCc
Q 046773 390 MGCMNQGYALMCVE--G--VIRVWEVEGGEYMYSFRERIGE 426 (453)
Q Consensus 390 ~~~~~~~~lls~s~--~--tIrlWD~~tG~~l~tL~gh~~~ 426 (453)
.++||++.++.++. + .+.+=|+ +|+..+.+..+.+.
T Consensus 377 ~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~ 416 (427)
T PRK02889 377 SFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGD 416 (427)
T ss_pred eECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCC
Confidence 88999999887654 2 3455455 46655656544443
No 202
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.93 E-value=7.9e-07 Score=91.54 Aligned_cols=275 Identities=15% Similarity=0.121 Sum_probs=149.6
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE--cCCeEEEEeCCCCEEEEEeecCCcceEEeeecc
Q 046773 156 YLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATLDGDIHVAVIDDVANETRTAHFGS 233 (453)
Q Consensus 156 ~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~D~tIkvWd~~~~g~~~~~~~~~~ 233 (453)
++++-..+++|.|.|.+|.+.+.++..... + -..+.| ||+.+..++.|+.|-++|+.+ +....+...+.
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~----~----h~~~~~s~Dgr~~yv~~rdg~vsviD~~~-~~~v~~i~~G~ 78 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGA----P----HAGLKFSPDGRYLYVANRDGTVSVIDLAT-GKVVATIKVGG 78 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STT----E----EEEEE-TT-SSEEEEEETTSEEEEEETTS-SSEEEEEE-SS
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCC----c----eeEEEecCCCCEEEEEcCCCeEEEEECCc-ccEEEEEecCC
Confidence 346777889999999999999999974321 1 112344 578888889999999999987 31111222221
Q ss_pred eecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEe---ccccc----------------CCcce-------eee
Q 046773 234 VMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFV---GGDLT----------------DHNTV-------MGW 287 (453)
Q Consensus 234 v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~---g~~l~----------------~~~~v-------~~w 287 (453)
+...+++|+||+++ +++...+++|.|+|.+|.+.+. .+... .+..+ ..|
T Consensus 79 ---~~~~i~~s~DG~~~--~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~ 153 (369)
T PF02239_consen 79 ---NPRGIAVSPDGKYV--YVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIW 153 (369)
T ss_dssp ---EEEEEEE--TTTEE--EEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEE
T ss_pred ---CcceEEEcCCCCEE--EEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEE
Confidence 12348999999982 4455678999999999977221 11000 00000 001
Q ss_pred e-------ee----eeeccceeEEEEcCCc--eEEEE-cCCcEEEEECCCCceEEEE-ee------------ccCCeEEE
Q 046773 288 R-------ML----TEFTEFVGRVRVTSHE--SAVAC-TSSRVITFDLRNQGMVLGE-RG------------YGRGLYVT 340 (453)
Q Consensus 288 ~-------~l----~~h~~~v~~v~~s~~~--~~vas-~d~tIrlWDl~t~~~~~~~-~g------------~~~~~~v~ 340 (453)
. .+ ...........|+|++ ++++. .++.|-++|+++++..... .| |-....+.
T Consensus 154 vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw 233 (369)
T PF02239_consen 154 VVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVW 233 (369)
T ss_dssp EEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEE
T ss_pred EEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEE
Confidence 0 00 0000111234566665 34443 3468889999987654322 22 11112233
Q ss_pred EEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEE----eC-CeEEEEECCCCe
Q 046773 341 SVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMC----VE-GVIRVWEVEGGE 415 (453)
Q Consensus 341 ~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~----s~-~tIrlWD~~tG~ 415 (453)
+..-.+...++.-... .+.+|+..+.+.+.++...+.. .-+..+|+++++... .+ .+|-|.|.++-+
T Consensus 234 ~~~~~~~~~~~~ig~~-------~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~ 305 (369)
T PF02239_consen 234 ATSGLGYFAIPLIGTD-------PVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK 305 (369)
T ss_dssp EEEBSSSSEEEEEE---------TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE
T ss_pred eeccccceecccccCC-------ccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcc
Confidence 3333333332222222 3456777777788888776555 445568899998876 33 899999999998
Q ss_pred EEEEecccCC-ceEE-EEecCCCEE-EEE-e-CCcEEEEecC
Q 046773 416 YMYSFRERIG-EEVI-AFVGDDRHV-AAS-C-GTNIHLWDFG 452 (453)
Q Consensus 416 ~l~tL~gh~~-~~V~-a~s~d~~~l-asg-~-D~~IklWDl~ 452 (453)
.+.++....+ ..+. .|++||+.+ +|. . ++.|.|+|-.
T Consensus 306 ~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~ 347 (369)
T PF02239_consen 306 VVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAK 347 (369)
T ss_dssp EEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETT
T ss_pred eeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECC
Confidence 8888864444 2144 889999976 455 3 3489999853
No 203
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.90 E-value=3.6e-08 Score=96.89 Aligned_cols=180 Identities=9% Similarity=0.142 Sum_probs=115.9
Q ss_pred EEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEc----CCceEEEEcCCcEEEEECCCCceEE
Q 046773 253 LYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVT----SHESAVACTSSRVITFDLRNQGMVL 328 (453)
Q Consensus 253 LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s----~~~~~vas~d~tIrlWDl~t~~~~~ 328 (453)
+|++-.-++|||+|..||+.+. .+.++...+|.|+|. |+.+.++|+|++||+||+++.+..-
T Consensus 43 vav~lSngsv~lyd~~tg~~l~--------------~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a 108 (376)
T KOG1188|consen 43 VAVSLSNGSVRLYDKGTGQLLE--------------EFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA 108 (376)
T ss_pred EEEEecCCeEEEEeccchhhhh--------------eecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh
Confidence 5566667899999999988431 234555667788874 5667888899999999999875443
Q ss_pred EE--eeccCCeEEEEEEec--CCEEEEEeCCCccccCcceEEEEEcCCCee-EEE-EEecCCCeeEEEEeeC-CCeEEEE
Q 046773 329 GE--RGYGRGLYVTSVDVN--AEAYIVVENRELENQNRRLAIVRRVDTFEE-VCR-FSLRADRNVNVMGCMN-QGYALMC 401 (453)
Q Consensus 329 ~~--~g~~~~~~v~~~~~~--g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~-v~~-l~~~~~~v~~~~~~~~-~~~lls~ 401 (453)
+. ..+. ...-.+|+.. ++.++.++--. ..+-.+-+||+..-+. +.. ...|.+.|..+.|+|+ +..++++
T Consensus 109 ~~~~~~~~-~~~f~~ld~nck~~ii~~GtE~~---~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSG 184 (376)
T KOG1188|consen 109 RISWTQQS-GTPFICLDLNCKKNIIACGTELT---RSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSG 184 (376)
T ss_pred heeccCCC-CCcceEeeccCcCCeEEeccccc---cCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEee
Confidence 32 2332 3345677763 44444442111 1233678899886543 332 2456677999999984 5666677
Q ss_pred eC-CeEEEEECCCCeE----EEEecccCCceEE--EEecCC-CEEEEE-eCCcEEEEecC
Q 046773 402 VE-GVIRVWEVEGGEY----MYSFRERIGEEVI--AFVGDD-RHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 402 s~-~tIrlWD~~tG~~----l~tL~gh~~~~V~--a~s~d~-~~lasg-~D~~IklWDl~ 452 (453)
|. |-|-|.|++.-.. ++++ .|... |. .|..++ ++|-+- .+.+..+|++.
T Consensus 185 SvDGLvnlfD~~~d~EeDaL~~vi-N~~sS-I~~igw~~~~ykrI~clTH~Etf~~~ele 242 (376)
T KOG1188|consen 185 SVDGLVNLFDTKKDNEEDALLHVI-NHGSS-IHLIGWLSKKYKRIMCLTHMETFAIYELE 242 (376)
T ss_pred cccceEEeeecCCCcchhhHHHhh-cccce-eeeeeeecCCcceEEEEEccCceeEEEcc
Confidence 66 9999999985422 2333 24333 54 344444 456555 88899999874
No 204
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.88 E-value=1.2e-07 Score=104.23 Aligned_cols=271 Identities=12% Similarity=0.131 Sum_probs=157.8
Q ss_pred EEEEEecCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCCcce
Q 046773 147 CRCLTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVANET 226 (453)
Q Consensus 147 v~~lafs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g~~~ 226 (453)
+.+.||-.++|..|+ ---|.++|+..+..++.++.-+. ...|. .-.-+-..+.++++++.-..+.+=..+- ..
T Consensus 10 l~~~~~~~~~llag~-gp~i~~yd~~s~~li~~~~~~~~--~~~H~-~e~~~~l~~~~~v~~~~~~~v~~~~~~~---~~ 82 (967)
T KOG0974|consen 10 LNLPQLVSDYLLAGS-GPEILVYDLSSGCLIRHLIQSKI--LEVHR-GEGKVKLLSGKIVTCAKSDEVYVKEASN---QI 82 (967)
T ss_pred ccchhhccceeeecC-CCceEEeeCCchhHhhhhhhhcc--ccccc-ccccceeccceEEEEEeecceeecchhh---hh
Confidence 566777557776665 45799999999987766542110 00000 0000112233455544333322211111 00
Q ss_pred EEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc
Q 046773 227 RTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE 306 (453)
Q Consensus 227 ~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~ 306 (453)
...-.+++.. -.|.-+.+. ++.+..++.+-|||..-+..+.- ...++.. --..+.-+.++++.
T Consensus 83 ~~~~s~wi~g----~~l~~e~k~---i~l~~~~ns~~i~d~~~~~~~~~--i~~~er~--------~l~~~~~~g~s~~~ 145 (967)
T KOG0974|consen 83 IERFSDWIFG----AKLFEENKK---IALVTSRNSLLIRDSKNSSVLSK--IQSDERC--------TLYSSLIIGDSAEE 145 (967)
T ss_pred hhhccccccc----cchhhhcce---EEEEEcCceEEEEecccCceehh--cCCCceE--------EEEeEEEEeccCcE
Confidence 0001111111 011111122 56677889999999887764320 0001100 00111123346666
Q ss_pred eEEEEc--CCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEE-EEEecC
Q 046773 307 SAVACT--SSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVC-RFSLRA 383 (453)
Q Consensus 307 ~~vas~--d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~-~l~~~~ 383 (453)
.-++++ -+.|-+|++.-......+.||.....-..++.+|.+++++|.|. ++|+|++++.+.+. +.=+|+
T Consensus 146 ~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDR-------siRlW~i~s~~~~~~~~fgHs 218 (967)
T KOG0974|consen 146 LYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDR-------SIRLWPIDSREVLGCTGFGHS 218 (967)
T ss_pred EEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCc-------ceeeeecccccccCccccccc
Confidence 655544 47899999973333334567765554445566899999999999 99999999976544 333566
Q ss_pred CCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEEEEe--cCCCEEEEE-eCCcEEEEec
Q 046773 384 DRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVIAFV--GDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 384 ~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~a~s--~d~~~lasg-~D~~IklWDl 451 (453)
..+-...+.++ ++++++. .|.|+|+.. ++.+.++.+|.+..+|++. ++..+++++ .|+++|+||+
T Consensus 219 aRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 219 ARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred ceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence 55666777766 7777777 999999654 7778899999887688543 444566788 9999999986
No 205
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=7.5e-08 Score=95.98 Aligned_cols=243 Identities=13% Similarity=0.098 Sum_probs=144.9
Q ss_pred EEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecCCc-----ceEE--eeecceecCceEEEEeCC
Q 046773 176 HVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDVAN-----ETRT--AHFGSVMDDGVLIDFTGC 246 (453)
Q Consensus 176 ~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g~-----~~~~--~~~~~v~~~~~~v~Fs~d 246 (453)
|.+-+.+|.+ .|.+|.|+ ++.||||+.|..++||+++. .+ .++. +|... .+--.++|...
T Consensus 48 ~qKD~~~H~G--------CiNAlqFS~N~~~L~SGGDD~~~~~W~~de-~~~~k~~KPI~~~~~~H~--SNIF~L~F~~~ 116 (609)
T KOG4227|consen 48 CQKDVREHTG--------CINALQFSHNDRFLASGGDDMHGRVWNVDE-LMVRKTPKPIGVMEHPHR--SNIFSLEFDLE 116 (609)
T ss_pred hhhhhhhhcc--------ccceeeeccCCeEEeecCCcceeeeechHH-HHhhcCCCCceeccCccc--cceEEEEEccC
Confidence 4455566554 78999997 67899999999999999875 11 2222 22110 11125889877
Q ss_pred CceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCC--ceEEEEcCCcEEEEECCCC
Q 046773 247 SRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSH--ESAVACTSSRVITFDLRNQ 324 (453)
Q Consensus 247 g~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~--~~~vas~d~tIrlWDl~t~ 324 (453)
.++ |+||..|++|-+-|++|.+++.-. .++ ...+.|..+..+|. .+++++.++.|-+||.+..
T Consensus 117 N~~---~~SG~~~~~VI~HDiEt~qsi~V~---~~~---------~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~ 181 (609)
T KOG4227|consen 117 NRF---LYSGERWGTVIKHDIETKQSIYVA---NEN---------NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDR 181 (609)
T ss_pred Cee---EecCCCcceeEeeecccceeeeee---ccc---------CcccceeecccCCCCceEEEEecCceEEEEeccCC
Confidence 775 899999999999999999954210 011 11235666666653 3455566789999999865
Q ss_pred ce---EEEEeeccCCeEEEEEEec-CCEEEEEeCCCccccCcceEEEEEcCCCee-EEE------EEe-cCCCeeEEEEe
Q 046773 325 GM---VLGERGYGRGLYVTSVDVN-AEAYIVVENRELENQNRRLAIVRRVDTFEE-VCR------FSL-RADRNVNVMGC 392 (453)
Q Consensus 325 ~~---~~~~~g~~~~~~v~~~~~~-g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~-v~~------l~~-~~~~v~~~~~~ 392 (453)
+. +....-.+...+...|.|- +..+++++.-+ -+-|||....+. +.. ++- ...| -++.++
T Consensus 182 ~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~-------G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~-M~~~~~ 253 (609)
T KOG4227|consen 182 QNPISLVLPANSGKNFYTAEFHPETPALILVNSETG-------GPNVFDRRMQARPVYQRSMFKGLPQENTEW-MGSLWS 253 (609)
T ss_pred CCCCceeeecCCCccceeeeecCCCceeEEeccccC-------CCCceeeccccchHHhhhccccCcccchhh-hheeeC
Confidence 31 1111111222333345543 34566666666 567888764321 100 100 1111 245677
Q ss_pred eCCCeEEEEeC-CeEEEEECCCCeEEEEecccC--CceEE-----EEe-cCCCEEEEE-eCCcEEEEecCC
Q 046773 393 MNQGYALMCVE-GVIRVWEVEGGEYMYSFRERI--GEEVI-----AFV-GDDRHVAAS-CGTNIHLWDFGA 453 (453)
Q Consensus 393 ~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~--~~~V~-----a~s-~d~~~lasg-~D~~IklWDl~~ 453 (453)
++|.++++--- .---++|+.+-+|..--..|. ++ .+ ++. .+++.|+|| .|=.|++|.+.+
T Consensus 254 ~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY-~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~ 323 (609)
T KOG4227|consen 254 PSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGY-CNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPR 323 (609)
T ss_pred CCCCeehhhhccCCCEEeeeecccceeEeccCCCCcc-eeeeeeeeeeeecceeeeccCcccceEEEecCC
Confidence 88887775443 344578888877754333442 33 32 222 355668999 788999998853
No 206
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.85 E-value=2.2e-08 Score=103.35 Aligned_cols=160 Identities=12% Similarity=0.111 Sum_probs=105.7
Q ss_pred CCCCCCCCeEEEEEEec--CCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCCccccccceEEEEEE----cCCeEEEEe
Q 046773 137 SDVDNPDGLTCRCLTLS--DLYLACGFADGAVRLFDLTTRLHVRTFR-PQHSDRLGQFSRAVSGIII----TDSQLIFAT 209 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs--~~~LaSGS~D~TIrlWD~~tg~~~~tl~-gh~~~~~~~~s~~V~~i~f----~g~~LasgS 209 (453)
.||+-- |.||.++ |.+|||||+|-.+.|||.-..+.++.+. ||.. -|-++.| ++++++||+
T Consensus 47 ~GH~GC----VN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHta--------NIFsvKFvP~tnnriv~sgA 114 (758)
T KOG1310|consen 47 TGHTGC----VNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTA--------NIFSVKFVPYTNNRIVLSGA 114 (758)
T ss_pred ccccce----ecceeecCCCCEEeecCCcceEEeecchhcceeeeeeccccc--------ceeEEeeeccCCCeEEEecc
Confidence 389733 8999997 5799999999999999999988888874 5443 3444555 356899999
Q ss_pred CCCCEEEEEeec-------CC----cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc-EEeccc
Q 046773 210 LDGDIHVAVIDD-------VA----NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE-VFVGGD 277 (453)
Q Consensus 210 ~D~tIkvWd~~~-------~g----~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~-~~~g~~ 277 (453)
.|+-|||.|++. .| .+....|+..|- .|+..|++-- .+-|+|.|+|||-.|++-.. +-.-
T Consensus 115 gDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVK----ria~~p~~Ph--tfwsasEDGtirQyDiREph~c~p~-- 186 (758)
T KOG1310|consen 115 GDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVK----RIATAPNGPH--TFWSASEDGTIRQYDIREPHVCNPD-- 186 (758)
T ss_pred CcceEEEEecccccccccccCccchhhhhhhhhhhhh----heecCCCCCc--eEEEecCCcceeeecccCCccCCcc--
Confidence 999999999974 11 122333544432 3677777731 35589999999999998643 1100
Q ss_pred ccCCcceeeeeeeee-ec--cceeEEEEcCCc---eEEEEcCCcEEEEECC
Q 046773 278 LTDHNTVMGWRMLTE-FT--EFVGRVRVTSHE---SAVACTSSRVITFDLR 322 (453)
Q Consensus 278 l~~~~~v~~w~~l~~-h~--~~v~~v~~s~~~---~~vas~d~tIrlWDl~ 322 (453)
+.+ ...|.. +. -...++.++|.. ++++++|--+||+|.+
T Consensus 187 ----~~~--~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 187 ----EDC--PSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred ----ccc--cHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 000 000000 00 123466777644 5677777789999965
No 207
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.85 E-value=3.7e-08 Score=108.10 Aligned_cols=191 Identities=11% Similarity=0.007 Sum_probs=131.7
Q ss_pred EEecCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcC--CeEEEEeCCCCEEEEEeecCC-cce
Q 046773 150 LTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITD--SQLIFATLDGDIHVAVIDDVA-NET 226 (453)
Q Consensus 150 lafs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g--~~LasgS~D~tIkvWd~~~~g-~~~ 226 (453)
+-+...+++.+..++.+-|||...+..++.+.......+ ..+.-+.++. -.+++|+.-+.|.+|...... ...
T Consensus 95 l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l----~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~ 170 (967)
T KOG0974|consen 95 LFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTL----YSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIR 170 (967)
T ss_pred hhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEE----EeEEEEeccCcEEEEEeccccccEEEEeccccCCcce
Confidence 334456899999999999999988877665543211000 0111122333 368999999999999986322 234
Q ss_pred EEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc
Q 046773 227 RTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE 306 (453)
Q Consensus 227 ~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~ 306 (453)
+.+|.|.++ .+.++.||++ ++|.|+|.+||+|++++++.+.+ +.-+|+..|.++.|.|..
T Consensus 171 l~GHeG~iF----~i~~s~dg~~---i~s~SdDRsiRlW~i~s~~~~~~-------------~~fgHsaRvw~~~~~~n~ 230 (967)
T KOG0974|consen 171 LKGHEGSIF----SIVTSLDGRY---IASVSDDRSIRLWPIDSREVLGC-------------TGFGHSARVWACCFLPNR 230 (967)
T ss_pred ecccCCceE----EEEEccCCcE---EEEEecCcceeeeecccccccCc-------------ccccccceeEEEEeccce
Confidence 788988876 4889999997 88999999999999999884321 233889999999999998
Q ss_pred eEEEEcCCcEEEEECCCCceEEEEeeccCCe-EEEEEEecCCEEEEEeCCCccccCcceEEEEEcCC
Q 046773 307 SAVACTSSRVITFDLRNQGMVLGERGYGRGL-YVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDT 372 (453)
Q Consensus 307 ~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~-~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~t 372 (453)
+++++-|.|.|+|+..- ..+-...+|.... .-..+.+..-.++++..|+ .+|+|+...
T Consensus 231 i~t~gedctcrvW~~~~-~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds-------~lk~~~l~~ 289 (967)
T KOG0974|consen 231 IITVGEDCTCRVWGVNG-TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDS-------TLKLWDLNG 289 (967)
T ss_pred eEEeccceEEEEEeccc-ceehhhhhhhhcceeEEEEcCCceEEEeeccCc-------chhhhhhhc
Confidence 88889999999997653 2222223443222 2122333334567777888 999998764
No 208
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.81 E-value=5.5e-06 Score=85.06 Aligned_cols=263 Identities=10% Similarity=0.043 Sum_probs=152.7
Q ss_pred EecCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCCcceEEee
Q 046773 151 TLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVANETRTAH 230 (453)
Q Consensus 151 afs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g~~~~~~~ 230 (453)
...+++|..++.|+.|.-+|..||+.+..+.-... ...+.+.++..++.++.|+.+..+|.++ | ..+..+
T Consensus 62 ~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~--------~~~~p~v~~~~v~v~~~~g~l~ald~~t-G-~~~W~~ 131 (377)
T TIGR03300 62 AVAGGKVYAADADGTVVALDAETGKRLWRVDLDER--------LSGGVGADGGLVFVGTEKGEVIALDAED-G-KELWRA 131 (377)
T ss_pred EEECCEEEEECCCCeEEEEEccCCcEeeeecCCCC--------cccceEEcCCEEEEEcCCCEEEEEECCC-C-cEeeee
Confidence 44577888999999999999999998877653211 1123456788888899999999999877 5 222111
Q ss_pred -e-cceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceE
Q 046773 231 -F-GSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESA 308 (453)
Q Consensus 231 -~-~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~ 308 (453)
. +.+... .... +++ ++.++.|+.|..+|.++|+..--.....+. ..+.....+ .+..+.++
T Consensus 132 ~~~~~~~~~---p~v~-~~~----v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~-----~~~~~~~sp----~~~~~~v~ 194 (377)
T TIGR03300 132 KLSSEVLSP---PLVA-NGL----VVVRTNDGRLTALDAATGERLWTYSRVTPA-----LTLRGSASP----VIADGGVL 194 (377)
T ss_pred ccCceeecC---CEEE-CCE----EEEECCCCeEEEEEcCCCceeeEEccCCCc-----eeecCCCCC----EEECCEEE
Confidence 1 111100 0111 222 455678899999999999843110000000 001111111 12233345
Q ss_pred EEEcCCcEEEEECCCCceEEEEe-ecc--CCe------EEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEE
Q 046773 309 VACTSSRVITFDLRNQGMVLGER-GYG--RGL------YVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRF 379 (453)
Q Consensus 309 vas~d~tIrlWDl~t~~~~~~~~-g~~--~~~------~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l 379 (453)
+++.++.+..+|+++|+.+-+.. ... ... ...+....++.+..++.++ .+..+|..+|+.+-..
T Consensus 195 ~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g-------~l~a~d~~tG~~~W~~ 267 (377)
T TIGR03300 195 VGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQG-------RVAALDLRSGRVLWKR 267 (377)
T ss_pred EECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCC-------EEEEEECCCCcEEEee
Confidence 55566889999999987654321 100 000 0011123456777778888 8999999999877655
Q ss_pred EecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEEEEecCCCEEEEE-eCCcEEEEec
Q 046773 380 SLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVIAFVGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 380 ~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~a~s~d~~~lasg-~D~~IklWDl 451 (453)
.... .... ...++++..++. +.|..+|..+|+.+.....-.+..+.+....+..|..+ .|+.|.++|.
T Consensus 268 ~~~~--~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 268 DASS--YQGP--AVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSR 337 (377)
T ss_pred ccCC--ccCc--eEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEEC
Confidence 4221 1111 124567666665 99999999999987655322222011222245566666 8888888875
No 209
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.79 E-value=2.2e-06 Score=90.04 Aligned_cols=220 Identities=9% Similarity=-0.020 Sum_probs=129.4
Q ss_pred CCcEEEEECCCCeEEEEecCCCCCccccccceEEEE--EEcCCeEEEEeC---CCCEEEEEeecCC-cceEEeeecceec
Q 046773 163 DGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGI--IITDSQLIFATL---DGDIHVAVIDDVA-NETRTAHFGSVMD 236 (453)
Q Consensus 163 D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i--~f~g~~LasgS~---D~tIkvWd~~~~g-~~~~~~~~~~v~~ 236 (453)
-..|.+||..++. .+.+..|.. .+... ++||+.|++.+. +..|.+||+.+ | ...+..+.+.+
T Consensus 181 ~~~l~~~d~dg~~-~~~lt~~~~--------~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~-g~~~~l~~~~g~~-- 248 (435)
T PRK05137 181 IKRLAIMDQDGAN-VRYLTDGSS--------LVLTPRFSPNRQEITYMSYANGRPRVYLLDLET-GQRELVGNFPGMT-- 248 (435)
T ss_pred ceEEEEECCCCCC-cEEEecCCC--------CeEeeEECCCCCEEEEEEecCCCCEEEEEECCC-CcEEEeecCCCcc--
Confidence 4589999986554 456654432 24444 456888998875 35799999977 5 23333232221
Q ss_pred CceEEEEeCCCceeeEEEEeeCCCe--EEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEEEc
Q 046773 237 DGVLIDFTGCSRYWVGLYAGLAGRA--FHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVACT 312 (453)
Q Consensus 237 ~~~~v~Fs~dg~~~~~LaSgS~D~t--IrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~vas~ 312 (453)
...+|+|||+.+ +++.+.|+. |.+||+++++.. .|+.+........++|++. +.++.
T Consensus 249 --~~~~~SPDG~~l--a~~~~~~g~~~Iy~~d~~~~~~~---------------~Lt~~~~~~~~~~~spDG~~i~f~s~ 309 (435)
T PRK05137 249 --FAPRFSPDGRKV--VMSLSQGGNTDIYTMDLRSGTTT---------------RLTDSPAIDTSPSYSPDGSQIVFESD 309 (435)
T ss_pred --cCcEECCCCCEE--EEEEecCCCceEEEEECCCCceE---------------EccCCCCccCceeEcCCCCEEEEEEC
Confidence 136899999873 456666655 666799888732 1223333345567888763 33443
Q ss_pred C---CcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEE
Q 046773 313 S---SRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNV 389 (453)
Q Consensus 313 d---~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~ 389 (453)
. ..|.++|+.++.. .++..+........++|+|+.++..+.+. ....+.+++.+++. ...++. +..+...
T Consensus 310 ~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~----~~~~i~~~d~~~~~-~~~lt~-~~~~~~p 382 (435)
T PRK05137 310 RSGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGG----GQFSIGVMKPDGSG-ERILTS-GFLVEGP 382 (435)
T ss_pred CCCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCC----CceEEEEEECCCCc-eEeccC-CCCCCCC
Confidence 2 2588889887643 33321122223356889999988776543 11256667765543 333432 2234567
Q ss_pred EEeeCCCeEEEEeC--C-----eEEEEECCCCeEEEEec
Q 046773 390 MGCMNQGYALMCVE--G-----VIRVWEVEGGEYMYSFR 421 (453)
Q Consensus 390 ~~~~~~~~lls~s~--~-----tIrlWD~~tG~~l~tL~ 421 (453)
.++||++.++..+. + .+.+.|+..++. ..|.
T Consensus 383 ~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~ 420 (435)
T PRK05137 383 TWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP 420 (435)
T ss_pred eECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc
Confidence 88999998875443 2 466778765543 4443
No 210
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.79 E-value=2.6e-07 Score=89.26 Aligned_cols=187 Identities=11% Similarity=0.084 Sum_probs=122.9
Q ss_pred EEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcC--Cc-eEEEEcCCcE
Q 046773 240 LIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTS--HE-SAVACTSSRV 316 (453)
Q Consensus 240 ~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~--~~-~~vas~d~tI 316 (453)
.|-|.|++.. |++ -.|..|.+|+++.+..... .+..+.. .++.....+-+.+| ++ .+.+..|+++
T Consensus 128 cvew~Pns~k---las-m~dn~i~l~~l~ess~~va-ev~ss~s-------~e~~~~ftsg~WspHHdgnqv~tt~d~tl 195 (370)
T KOG1007|consen 128 CVEWEPNSDK---LAS-MDDNNIVLWSLDESSKIVA-EVLSSES-------AEMRHSFTSGAWSPHHDGNQVATTSDSTL 195 (370)
T ss_pred eEEEcCCCCe---eEE-eccCceEEEEcccCcchhe-eeccccc-------ccccceecccccCCCCccceEEEeCCCcE
Confidence 5899999986 444 3489999999987652110 0000100 01112222233444 22 3444677899
Q ss_pred EEEECCCCceEEEE-eeccCCeEEEEEEecCC---EEEEEeCCCccccCcceEEEEEcCC-CeeEEEEEecCCCeeEEEE
Q 046773 317 ITFDLRNQGMVLGE-RGYGRGLYVTSVDVNAE---AYIVVENRELENQNRRLAIVRRVDT-FEEVCRFSLRADRNVNVMG 391 (453)
Q Consensus 317 rlWDl~t~~~~~~~-~g~~~~~~v~~~~~~g~---~l~s~s~dg~~~~~~~~i~Iw~~~t-g~~v~~l~~~~~~v~~~~~ 391 (453)
+.||++|..+.... ..|+ ..|..++++++ .|+++..|+ -+||||... ..+++++..|.+||-.+.|
T Consensus 196 ~~~D~RT~~~~~sI~dAHg--q~vrdlDfNpnkq~~lvt~gDdg-------yvriWD~R~tk~pv~el~~HsHWvW~VRf 266 (370)
T KOG1007|consen 196 QFWDLRTMKKNNSIEDAHG--QRVRDLDFNPNKQHILVTCGDDG-------YVRIWDTRKTKFPVQELPGHSHWVWAVRF 266 (370)
T ss_pred EEEEccchhhhcchhhhhc--ceeeeccCCCCceEEEEEcCCCc-------cEEEEeccCCCccccccCCCceEEEEEEe
Confidence 99999998776553 4454 36778888876 467788888 999999874 5688999999999999999
Q ss_pred eeCCCeEE-EEeC-CeEEEEECCCC-----------------------------eEEEEecccCCceEEEE--ec-CCCE
Q 046773 392 CMNQGYAL-MCVE-GVIRVWEVEGG-----------------------------EYMYSFRERIGEEVIAF--VG-DDRH 437 (453)
Q Consensus 392 ~~~~~~ll-s~s~-~tIrlWD~~tG-----------------------------~~l~tL~gh~~~~V~a~--s~-d~~~ 437 (453)
.|.-..|+ ++++ ..|-||.+.+- ..|.++..|.+. |.++ +. |.=+
T Consensus 267 n~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDS-VY~~aWSsadPWi 345 (370)
T KOG1007|consen 267 NPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDS-VYALAWSSADPWI 345 (370)
T ss_pred cCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccc-eEEEeeccCCCee
Confidence 88655555 4444 88999976421 114467788888 8844 44 4434
Q ss_pred EEEE-eCCcEEE
Q 046773 438 VAAS-CGTNIHL 448 (453)
Q Consensus 438 lasg-~D~~Ikl 448 (453)
.||= +||.+.|
T Consensus 346 FASLSYDGRviI 357 (370)
T KOG1007|consen 346 FASLSYDGRVII 357 (370)
T ss_pred EEEeccCceEEe
Confidence 4665 8888765
No 211
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.77 E-value=6.6e-08 Score=96.83 Aligned_cols=147 Identities=15% Similarity=0.080 Sum_probs=109.9
Q ss_pred EEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEE--cCCcEE
Q 046773 240 LIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVAC--TSSRVI 317 (453)
Q Consensus 240 ~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas--~d~tIr 317 (453)
++.|.+++.- -||||+.|+-||||-++.++--.| ...+...-.|..|+..||.|+|+|++.++|| +++.|-
T Consensus 18 s~dfq~n~~~--~laT~G~D~~iriW~v~r~~~~~~-----~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~ 90 (434)
T KOG1009|consen 18 SVDFQKNSLN--KLATAGGDKDIRIWKVNRSEPGGG-----DMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVF 90 (434)
T ss_pred EEEeccCccc--ceecccCccceeeeeeeecCCCCC-----ceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEE
Confidence 4677777551 389999999999999887651000 0123333468899999999999998766654 347899
Q ss_pred EEECC--------C-----Cc---eEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEe
Q 046773 318 TFDLR--------N-----QG---MVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSL 381 (453)
Q Consensus 318 lWDl~--------t-----~~---~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~ 381 (453)
||-.. + .+ ..+.+.+|...++-.+.++++..+++++.|. ++++||+..|+.++.+..
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dn-------s~~l~Dv~~G~l~~~~~d 163 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDN-------SVRLWDVHAGQLLAILDD 163 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccc-------eEEEEEeccceeEeeccc
Confidence 99766 3 11 1223467777777778889999999999999 999999999999998888
Q ss_pred cCCCeeEEEEeeCCCeEEE
Q 046773 382 RADRNVNVMGCMNQGYALM 400 (453)
Q Consensus 382 ~~~~v~~~~~~~~~~~lls 400 (453)
|.+-++.++..|-..++++
T Consensus 164 h~~yvqgvawDpl~qyv~s 182 (434)
T KOG1009|consen 164 HEHYVQGVAWDPLNQYVAS 182 (434)
T ss_pred cccccceeecchhhhhhhh
Confidence 8888888888776666554
No 212
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.76 E-value=1.2e-06 Score=93.75 Aligned_cols=280 Identities=11% Similarity=0.099 Sum_probs=157.7
Q ss_pred EEEEEEecCCEEEE-----E---eCCCcEEEEECCCC-eEEEEecCCCCCccccccceEEEEEE---cCCeEEEEeCCCC
Q 046773 146 TCRCLTLSDLYLAC-----G---FADGAVRLFDLTTR-LHVRTFRPQHSDRLGQFSRAVSGIII---TDSQLIFATLDGD 213 (453)
Q Consensus 146 ~v~~lafs~~~LaS-----G---S~D~TIrlWD~~tg-~~~~tl~gh~~~~~~~~s~~V~~i~f---~g~~LasgS~D~t 213 (453)
+..+++|+.....+ . ..+..+-|||+... ..-..|... ..|.++.| ++..|+.|..+|.
T Consensus 196 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~vW~~~~p~~Pe~~~~~~---------s~v~~~~f~p~~p~ll~gG~y~Gq 266 (555)
T KOG1587|consen 196 IAVSVAYSELDFDRYAFNKPLLSEPDGVLLVWSLKNPNTPELVLESP---------SEVTCLKFCPFDPNLLAGGCYNGQ 266 (555)
T ss_pred eEEEEeecccccccccccccccccCCceEEEEecCCCCCceEEEecC---------CceeEEEeccCCcceEEeeccCce
Confidence 45677776532111 1 12247889999877 333444321 24666665 5789999999999
Q ss_pred EEEEEeecCCcc---eEEe----eecceecCceEEEE--eCCCceeeEEEEeeCCCeEEEeeCCCCcE-EecccccCCcc
Q 046773 214 IHVAVIDDVANE---TRTA----HFGSVMDDGVLIDF--TGCSRYWVGLYAGLAGRAFHIWDRQAEEV-FVGGDLTDHNT 283 (453)
Q Consensus 214 IkvWd~~~~g~~---~~~~----~~~~v~~~~~~v~F--s~dg~~~~~LaSgS~D~tIrvWD~~tg~~-~~g~~l~~~~~ 283 (453)
|-+||+...+.. .+.. |...+. .+-. ++.. .-++|+|.|+.|+.|+++-=.. ..+. +.++..
T Consensus 267 V~lWD~~~~~~~~~s~ls~~~~sh~~~v~----~vvW~~~~~~---~~f~s~ssDG~i~~W~~~~l~~P~e~~-~~~~~~ 338 (555)
T KOG1587|consen 267 VVLWDLRKGSDTPPSGLSALEVSHSEPVT----AVVWLQNEHN---TEFFSLSSDGSICSWDTDMLSLPVEGL-LLESKK 338 (555)
T ss_pred EEEEEccCCCCCCCcccccccccCCcCeE----EEEEeccCCC---CceEEEecCCcEeeeeccccccchhhc-cccccc
Confidence 999999873321 1111 222221 1111 1111 1278999999999998764221 0000 000000
Q ss_pred eeeeeeeeeeccceeEEEEc---CCceEEEEcCCcEE---EEECCCCc----eEE-EEeeccCCeEEEEEEecCCEEEEE
Q 046773 284 VMGWRMLTEFTEFVGRVRVT---SHESAVACTSSRVI---TFDLRNQG----MVL-GERGYGRGLYVTSVDVNAEAYIVV 352 (453)
Q Consensus 284 v~~w~~l~~h~~~v~~v~~s---~~~~~vas~d~tIr---lWDl~t~~----~~~-~~~g~~~~~~v~~~~~~g~~l~s~ 352 (453)
..+ ..+.. .-.+.++.|. |...++++..|.|- -++.+... ..+ +...|...+++..++|-+..+++.
T Consensus 339 ~~~-~~~~~-~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls 416 (555)
T KOG1587|consen 339 HKG-QQSSK-AVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLS 416 (555)
T ss_pred ccc-ccccc-ccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeee
Confidence 000 00011 1234566774 55566766667654 35666543 111 112233344444555666777777
Q ss_pred eCCCccccCcceEEEEEcC-CCeeEEEEEecCCCeeEEEEeeCCCeEEEEe-C-CeEEEEECCCC--eEEEEecccCCce
Q 046773 353 ENRELENQNRRLAIVRRVD-TFEEVCRFSLRADRNVNVMGCMNQGYALMCV-E-GVIRVWEVEGG--EYMYSFRERIGEE 427 (453)
Q Consensus 353 s~dg~~~~~~~~i~Iw~~~-tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s-~-~tIrlWD~~tG--~~l~tL~gh~~~~ 427 (453)
+.|- +++||.-. ...++..+..+++-+..+++||---.+.++. . |+|-|||+.-- +.+.+..-+ ...
T Consensus 417 ~gDW-------~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~-~~~ 488 (555)
T KOG1587|consen 417 VGDW-------TVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVC-SPA 488 (555)
T ss_pred eccc-------eeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccc-ccc
Confidence 7799 99999876 4445555555666677788887433344444 3 99999999753 223333222 220
Q ss_pred EE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 428 VI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 428 V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
.. .++++++.|+.| .-|+|++|++.
T Consensus 489 l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 489 LTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred cceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 22 456789999999 89999999984
No 213
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.76 E-value=3.3e-06 Score=88.37 Aligned_cols=186 Identities=8% Similarity=-0.009 Sum_probs=107.9
Q ss_pred EEEEeCCCceeeEEEEeeCC---CeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEEE-cC
Q 046773 240 LIDFTGCSRYWVGLYAGLAG---RAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVAC-TS 313 (453)
Q Consensus 240 ~v~Fs~dg~~~~~LaSgS~D---~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~vas-~d 313 (453)
...|+|||+.+ +..+.+ ..|.+||+.+|+... +....+.+...+|+|++. +.+. .+
T Consensus 203 ~p~wSpDG~~l---a~~s~~~~~~~l~~~~l~~g~~~~---------------l~~~~g~~~~~~~SpDG~~la~~~~~~ 264 (430)
T PRK00178 203 SPRWSPDGKRI---AYVSFEQKRPRIFVQNLDTGRREQ---------------ITNFEGLNGAPAWSPDGSKLAFVLSKD 264 (430)
T ss_pred eeeECCCCCEE---EEEEcCCCCCEEEEEECCCCCEEE---------------ccCCCCCcCCeEECCCCCEEEEEEccC
Confidence 36899999973 333322 468899999987321 111122344578898774 2222 23
Q ss_pred C--cEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEE
Q 046773 314 S--RVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMG 391 (453)
Q Consensus 314 ~--tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~ 391 (453)
+ .|.++|++++.. ..+..+........++++|+.++..+... ....+.++++++++. ..++..........+
T Consensus 265 g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~----g~~~iy~~d~~~g~~-~~lt~~~~~~~~~~~ 338 (430)
T PRK00178 265 GNPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRG----GKPQIYKVNVNGGRA-ERVTFVGNYNARPRL 338 (430)
T ss_pred CCceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCC----CCceEEEEECCCCCE-EEeecCCCCccceEE
Confidence 3 588999998754 33322221222356888898877665422 012566667777753 334433322334567
Q ss_pred eeCCCeEEEEeC----CeEEEEECCCCeEEEEec-ccCCceEEEEecCCCEEEEE--eCCc--EEEEec
Q 046773 392 CMNQGYALMCVE----GVIRVWEVEGGEYMYSFR-ERIGEEVIAFVGDDRHVAAS--CGTN--IHLWDF 451 (453)
Q Consensus 392 ~~~~~~lls~s~----~tIrlWD~~tG~~l~tL~-gh~~~~V~a~s~d~~~lasg--~D~~--IklWDl 451 (453)
+|++++++..+. ..|.+||+.+|+. +.|. ...+. --+++|||+.|+-+ .++. |.+.++
T Consensus 339 Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~~~~~~-~p~~spdg~~i~~~~~~~g~~~l~~~~~ 405 (430)
T PRK00178 339 SADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTDTSLDE-SPSVAPNGTMLIYATRQQGRGVLMLVSI 405 (430)
T ss_pred CCCCCEEEEEEccCCceEEEEEECCCCCE-EEccCCCCCC-CceECCCCCEEEEEEecCCceEEEEEEC
Confidence 889998876553 3688999999865 3332 21111 12789999988754 3443 444443
No 214
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.74 E-value=5.3e-06 Score=90.09 Aligned_cols=241 Identities=11% Similarity=0.090 Sum_probs=141.7
Q ss_pred CCCCCCCCeEEEEEEecC-----CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEE-EEEEcCCeEEEEeC
Q 046773 137 SDVDNPDGLTCRCLTLSD-----LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVS-GIIITDSQLIFATL 210 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~-----~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~-~i~f~g~~LasgS~ 210 (453)
.+|.+| +..+++.+ .++.+.|.||+|++||-..++.++|+.-+.. ++. .+. ...++-+..++.|.
T Consensus 54 ~~~~a~----l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~----v~~-~~~~~~~a~~s~~~~~s~ 124 (792)
T KOG1963|consen 54 EDHTAP----LTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLP----VHA-LVYKPAQADISANVYVSV 124 (792)
T ss_pred ccccCc----cceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCc----eeE-EEechhHhCccceeEeec
Confidence 389988 77888865 3788999999999999999999999975322 111 111 00112122222221
Q ss_pred C-C------------CEEEEEeecCCcceEEeeecceecC---ceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEe
Q 046773 211 D-G------------DIHVAVIDDVANETRTAHFGSVMDD---GVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFV 274 (453)
Q Consensus 211 D-~------------tIkvWd~~~~g~~~~~~~~~~v~~~---~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~ 274 (453)
+ . +++=..+. +...+.+.+... ...|.+++.|.+- .--.+..+.+|++.++....
T Consensus 125 ~~~~~~~~~s~~~~~q~~~~~~~-----t~~~~~~d~~~~~~~~~~I~~~~~ge~~----~i~~~~~~~~~~v~~~~~~~ 195 (792)
T KOG1963|consen 125 EDYSILTTFSKKLSKQSSRFVLA-----TFDSAKGDFLKEHQEPKSIVDNNSGEFK----GIVHMCKIHIYFVPKHTKHT 195 (792)
T ss_pred ccceeeeecccccccceeeeEee-----eccccchhhhhhhcCCccEEEcCCceEE----EEEEeeeEEEEEecccceee
Confidence 1 1 11111111 111111111111 1347788888752 22356778999999865221
Q ss_pred cccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEc--CCcEEEEE-CC-CCc--eEEEEeeccCCeEEEEEEecCCE
Q 046773 275 GGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACT--SSRVITFD-LR-NQG--MVLGERGYGRGLYVTSVDVNAEA 348 (453)
Q Consensus 275 g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~--d~tIrlWD-l~-t~~--~~~~~~g~~~~~~v~~~~~~g~~ 348 (453)
+.. ..-..|+....+++++|.+.++|++ ||.|.+|. .. .+. ....+.=|...+.+.+|+.+|..
T Consensus 196 ~~~----------~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~ 265 (792)
T KOG1963|consen 196 SSR----------DITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAY 265 (792)
T ss_pred ccc----------hhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCce
Confidence 100 1224677778999999999877765 48899994 33 111 11222223335566778888999
Q ss_pred EEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEE-EEeCCeEEEEECCC
Q 046773 349 YIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYAL-MCVEGVIRVWEVEG 413 (453)
Q Consensus 349 l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~ll-s~s~~tIrlWD~~t 413 (453)
+.||+..+ ..-+|..+|++. +-|.--..-+..++.++|+.+.. .+.|+.|.|=.+.+
T Consensus 266 LlSGG~E~-------VLv~Wq~~T~~k-qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~d 323 (792)
T KOG1963|consen 266 LLSGGREG-------VLVLWQLETGKK-QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASD 323 (792)
T ss_pred Eeecccce-------EEEEEeecCCCc-ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccc
Confidence 99999999 999999999862 22221123477788888877654 44556555554433
No 215
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.73 E-value=9.6e-07 Score=92.20 Aligned_cols=202 Identities=12% Similarity=0.051 Sum_probs=132.7
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCCcceEEeee-cc
Q 046773 155 LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVANETRTAHF-GS 233 (453)
Q Consensus 155 ~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g~~~~~~~~-~~ 233 (453)
.++|....|+.+||||..+++...-|.+- ++.|..+|.-.|.+.. +-.+.+... ..
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~p~----------------------~~~s~t~~~~~w~L~~-~~s~~k~~~~~~ 62 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKNQLQQEFAPI----------------------ASLSGTCTYTKWGLSA-DYSPMKWLSLEK 62 (541)
T ss_pred heEeecCCCCeEEEEEccCceeeeeeccc----------------------hhccCcceeEEEEEEe-ccchHHHHhHHH
Confidence 68899999999999999999977666531 1222233445666433 112211110 00
Q ss_pred eecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcE---EecccccCCcceeeeeeeeeeccceeEEEEcCCc--eE
Q 046773 234 VMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEV---FVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SA 308 (453)
Q Consensus 234 v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~---~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~ 308 (453)
. ..-+.| . .+|+=|-.-+.|-++++..|++ +.+ -+|-+.|+++..+.+. +.
T Consensus 63 ~------~~~s~~-t--~~lvlgt~~g~v~~ys~~~g~it~~~st---------------~~h~~~v~~~~~~~~~~ciy 118 (541)
T KOG4547|consen 63 A------KKASLD-T--SMLVLGTPQGSVLLYSVAGGEITAKLST---------------DKHYGNVNEILDAQRLGCIY 118 (541)
T ss_pred H------hhccCC-c--eEEEeecCCccEEEEEecCCeEEEEEec---------------CCCCCcceeeecccccCceE
Confidence 0 000011 0 1366777888999999999982 221 2567888887665443 34
Q ss_pred EEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeE
Q 046773 309 VACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVN 388 (453)
Q Consensus 309 vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~ 388 (453)
++++|..|..|+..+...+.............++++++..+++|| + +|++|++++.+.+.+|++|+.-|++
T Consensus 119 S~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~-------~ik~~~~~~kevv~~ftgh~s~v~t 189 (541)
T KOG4547|consen 119 SVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--R-------QIKVLDIETKEVVITFTGHGSPVRT 189 (541)
T ss_pred ecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--c-------eEEEEEccCceEEEEecCCCcceEE
Confidence 556678899999998654333333333344456777777777654 4 9999999999999999999999999
Q ss_pred EEEeeC-----CCeEEEEeC--CeEEEEECC
Q 046773 389 VMGCMN-----QGYALMCVE--GVIRVWEVE 412 (453)
Q Consensus 389 ~~~~~~-----~~~lls~s~--~tIrlWD~~ 412 (453)
+.|..+ |.+++++.. .-|-+|=+.
T Consensus 190 ~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 190 LSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred EEEEEeccccccceeeeccccccceeEEEEE
Confidence 998876 778887765 566677544
No 216
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.73 E-value=4.5e-05 Score=77.80 Aligned_cols=252 Identities=10% Similarity=0.021 Sum_probs=144.1
Q ss_pred CCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeC----------CCCEEEEEeecCCcceEEeeec
Q 046773 163 DGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATL----------DGDIHVAVIDDVANETRTAHFG 232 (453)
Q Consensus 163 D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~----------D~tIkvWd~~~~g~~~~~~~~~ 232 (453)
.++|-+-|..+++.+.++..... | ... ++.|++.|+.+.. +..|.|||..+ +........+
T Consensus 26 ~~~v~ViD~~~~~v~g~i~~G~~----P---~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t-~~~~~~i~~p 96 (352)
T TIGR02658 26 TTQVYTIDGEAGRVLGMTDGGFL----P---NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT-HLPIADIELP 96 (352)
T ss_pred CceEEEEECCCCEEEEEEEccCC----C---cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECcc-CcEEeEEccC
Confidence 38999999999999988864222 1 122 6678888776655 67899999988 3111111110
Q ss_pred -----ceecCceEEEEeCCCceeeEEEEe--eCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCC
Q 046773 233 -----SVMDDGVLIDFTGCSRYWVGLYAG--LAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSH 305 (453)
Q Consensus 233 -----~v~~~~~~v~Fs~dg~~~~~LaSg--S~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~ 305 (453)
.+......++|+|||++ |+.. +.+.+|-|.|+++++.+.--..+++ ++. +..+.+
T Consensus 97 ~~p~~~~~~~~~~~~ls~dgk~---l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~-----~~v----------y~t~e~ 158 (352)
T TIGR02658 97 EGPRFLVGTYPWMTSLTPDNKT---LLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC-----YHI----------FPTAND 158 (352)
T ss_pred CCchhhccCccceEEECCCCCE---EEEecCCCCCEEEEEECCCCcEEEEEeCCCC-----cEE----------EEecCC
Confidence 01112235899999998 4433 4489999999999984320001111 110 111223
Q ss_pred ceEEEEcCCcEEEEECCCCceEEEE---eeccCCeEE---EEEEe-cCCEEEEEeCCCccccCcceEEEEEcCC-----C
Q 046773 306 ESAVACTSSRVITFDLRNQGMVLGE---RGYGRGLYV---TSVDV-NAEAYIVVENRELENQNRRLAIVRRVDT-----F 373 (453)
Q Consensus 306 ~~~vas~d~tIrlWDl~t~~~~~~~---~g~~~~~~v---~~~~~-~g~~l~s~s~dg~~~~~~~~i~Iw~~~t-----g 373 (453)
..++-|.|++...--+.+.+..... ..+....++ ..|.+ +|.. +=.|..| ++.+-|+.. .
T Consensus 159 ~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~-~~vs~eG-------~V~~id~~~~~~~~~ 230 (352)
T TIGR02658 159 TFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRL-VWPTYTG-------KIFQIDLSSGDAKFL 230 (352)
T ss_pred ccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcE-EEEecCC-------eEEEEecCCCcceec
Confidence 3344455544332222221111111 111100000 12344 4443 3345557 777777432 2
Q ss_pred eeEEEEE-------ecCCCeeEEEEeeCCCeEEEEe----------C-CeEEEEECCCCeEEEEec-ccCCceEE--EEe
Q 046773 374 EEVCRFS-------LRADRNVNVMGCMNQGYALMCV----------E-GVIRVWEVEGGEYMYSFR-ERIGEEVI--AFV 432 (453)
Q Consensus 374 ~~v~~l~-------~~~~~v~~~~~~~~~~~lls~s----------~-~tIrlWD~~tG~~l~tL~-gh~~~~V~--a~s 432 (453)
+.+..++ .+|.+.+.++++++++++.... . +.|.+.|++|++.+..+. |+ .++ +|+
T Consensus 231 ~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~---~~~~iavS 307 (352)
T TIGR02658 231 PAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH---EIDSINVS 307 (352)
T ss_pred ceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC---ceeeEEEC
Confidence 2233222 2455667788999988877632 1 689999999999999875 33 244 788
Q ss_pred cCCC-EEEEE--eCCcEEEEecC
Q 046773 433 GDDR-HVAAS--CGTNIHLWDFG 452 (453)
Q Consensus 433 ~d~~-~lasg--~D~~IklWDl~ 452 (453)
||++ +|... .+++|.+.|..
T Consensus 308 ~Dgkp~lyvtn~~s~~VsViD~~ 330 (352)
T TIGR02658 308 QDAKPLLYALSTGDKTLYIFDAE 330 (352)
T ss_pred CCCCeEEEEeCCCCCcEEEEECc
Confidence 9999 77654 67889999864
No 217
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.73 E-value=6e-07 Score=84.20 Aligned_cols=105 Identities=12% Similarity=0.260 Sum_probs=78.1
Q ss_pred EEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC----CeEEEEECCCC
Q 046773 339 VTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE----GVIRVWEVEGG 414 (453)
Q Consensus 339 v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~----~tIrlWD~~tG 414 (453)
-.+++|+++.+++..+.. .+.++||+.. ++.+..+. ......+.++|+|++++.++- |.|.+||+.+.
T Consensus 64 ~~~WsP~g~~favi~g~~-----~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~ 135 (194)
T PF08662_consen 64 DVAWSPNGNEFAVIYGSM-----PAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK 135 (194)
T ss_pred EEEECcCCCEEEEEEccC-----CcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 355678888877665432 1289999996 55565553 344678899999999998752 78999999999
Q ss_pred eEEEEecccCCceEEEEecCCCEEEEE-e------CCcEEEEecC
Q 046773 415 EYMYSFRERIGEEVIAFVGDDRHVAAS-C------GTNIHLWDFG 452 (453)
Q Consensus 415 ~~l~tL~gh~~~~V~a~s~d~~~lasg-~------D~~IklWDl~ 452 (453)
+++.++. |......+++|||++|+++ . |+.++||++.
T Consensus 136 ~~i~~~~-~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 136 KKISTFE-HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EEeeccc-cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 9998875 3333123889999999877 3 8999999974
No 218
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.72 E-value=2.6e-07 Score=89.30 Aligned_cols=195 Identities=11% Similarity=0.131 Sum_probs=117.9
Q ss_pred EEEeCCC--ceeeEEEEeeCCCeEEEeeCCCCc--EEecccccCCcceeeeeeeeeeccceeEEE---EcCCceEEEEcC
Q 046773 241 IDFTGCS--RYWVGLYAGLAGRAFHIWDRQAEE--VFVGGDLTDHNTVMGWRMLTEFTEFVGRVR---VTSHESAVACTS 313 (453)
Q Consensus 241 v~Fs~dg--~~~~~LaSgS~D~tIrvWD~~tg~--~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~---~s~~~~~vas~d 313 (453)
+.|.||. .+--.||| .+..+|||.+...+ ...-..|.. +.=..+..+..+.- +.|+-+.++|-|
T Consensus 102 ~~wiPd~~g~~pdlLAT--s~D~LRlWri~~ee~~~~~~~~L~~-------~kns~~~aPlTSFDWne~dp~~igtSSiD 172 (364)
T KOG0290|consen 102 LMWIPDSKGVYPDLLAT--SSDFLRLWRIGDEESRVELQSVLNN-------NKNSEFCAPLTSFDWNEVDPNLIGTSSID 172 (364)
T ss_pred eEecCCccccCcchhhc--ccCeEEEEeccCcCCceehhhhhcc-------CcccccCCcccccccccCCcceeEeeccc
Confidence 4555653 33223555 34579999987533 111000100 01123344444432 235555666778
Q ss_pred CcEEEEECCCCce--EEE-EeeccCCeEEEEEEecC-CEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCC---Ce
Q 046773 314 SRVITFDLRNQGM--VLG-ERGYGRGLYVTSVDVNA-EAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRAD---RN 386 (453)
Q Consensus 314 ~tIrlWDl~t~~~--~~~-~~g~~~~~~v~~~~~~g-~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~---~v 386 (453)
.|+.|||++++.. +++ +..|-..++-.+|.-.+ +.+++++.|| .+|++|+..-+....+--.|. ..
T Consensus 173 TTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDG-------SvRmFDLR~leHSTIIYE~p~~~~pL 245 (364)
T KOG0290|consen 173 TTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADG-------SVRMFDLRSLEHSTIIYEDPSPSTPL 245 (364)
T ss_pred CeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCC-------cEEEEEecccccceEEecCCCCCCcc
Confidence 9999999999622 333 35565555545554322 4679999999 999999875332222222222 13
Q ss_pred eEEEEee-CCCeEEEEe-C-CeEEEEECCC-CeEEEEecccCCceEEE--EecC-CCEEEEE-eCCcEEEEecC
Q 046773 387 VNVMGCM-NQGYALMCV-E-GVIRVWEVEG-GEYMYSFRERIGEEVIA--FVGD-DRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 387 ~~~~~~~-~~~~lls~s-~-~tIrlWD~~t-G~~l~tL~gh~~~~V~a--~s~d-~~~lasg-~D~~IklWDl~ 452 (453)
..+..+. +..++++-. + +.|-|-|+.. +..+..|++|.+. |++ ..|. ..+|+|+ .|..+.|||+.
T Consensus 246 lRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~-VNgIaWaPhS~~hictaGDD~qaliWDl~ 318 (364)
T KOG0290|consen 246 LRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQAS-VNGIAWAPHSSSHICTAGDDCQALIWDLQ 318 (364)
T ss_pred eeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCccc-ccceEecCCCCceeeecCCcceEEEEecc
Confidence 3444554 345665543 3 8899999986 4668899999999 995 4574 4588888 99999999985
No 219
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.71 E-value=7.1e-06 Score=86.70 Aligned_cols=185 Identities=12% Similarity=0.109 Sum_probs=106.1
Q ss_pred EEEeCCCceeeEEEEeeCC--CeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEE-EcCC-
Q 046773 241 IDFTGCSRYWVGLYAGLAG--RAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVA-CTSS- 314 (453)
Q Consensus 241 v~Fs~dg~~~~~LaSgS~D--~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~va-s~d~- 314 (453)
..|||||++++ ++...+ ..|.+||+.+++... +..........+++|++. +.+ +.++
T Consensus 223 p~wSPDG~~La--~~s~~~g~~~L~~~dl~tg~~~~---------------lt~~~g~~~~~~wSPDG~~La~~~~~~g~ 285 (448)
T PRK04792 223 PAWSPDGRKLA--YVSFENRKAEIFVQDIYTQVREK---------------VTSFPGINGAPRFSPDGKKLALVLSKDGQ 285 (448)
T ss_pred ceECCCCCEEE--EEEecCCCcEEEEEECCCCCeEE---------------ecCCCCCcCCeeECCCCCEEEEEEeCCCC
Confidence 68999999743 222222 358889999887211 111112234567888774 222 3344
Q ss_pred -cEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCC-CccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEe
Q 046773 315 -RVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENR-ELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGC 392 (453)
Q Consensus 315 -tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~d-g~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~ 392 (453)
.|.++|+++++. .++..+.....-.+++++|+.++..+.. + ...+.+++.++++. ..++..........++
T Consensus 286 ~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g-----~~~Iy~~dl~~g~~-~~Lt~~g~~~~~~~~S 358 (448)
T PRK04792 286 PEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGG-----KPQIYRVNLASGKV-SRLTFEGEQNLGGSIT 358 (448)
T ss_pred eEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCC-----CceEEEEECCCCCE-EEEecCCCCCcCeeEC
Confidence 488889998753 3332222222235688899888766543 3 11455556666653 3444444334456788
Q ss_pred eCCCeEEEEeC--C--eEEEEECCCCeEEEEeccc-CCceEEEEecCCCEEEEE--eCCc--EEEEec
Q 046773 393 MNQGYALMCVE--G--VIRVWEVEGGEYMYSFRER-IGEEVIAFVGDDRHVAAS--CGTN--IHLWDF 451 (453)
Q Consensus 393 ~~~~~lls~s~--~--tIrlWD~~tG~~l~tL~gh-~~~~V~a~s~d~~~lasg--~D~~--IklWDl 451 (453)
|++++++..+. + .|.++|+.+|+. ..+... .+. --+++|||+.|+-. .++. +.++++
T Consensus 359 pDG~~l~~~~~~~g~~~I~~~dl~~g~~-~~lt~~~~d~-~ps~spdG~~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 359 PDGRSMIMVNRTNGKFNIARQDLETGAM-QVLTSTRLDE-SPSVAPNGTMVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred CCCCEEEEEEecCCceEEEEEECCCCCe-EEccCCCCCC-CceECCCCCEEEEEEecCCceEEEEEEC
Confidence 99998876543 3 566679988865 333322 111 11789999988654 4444 555554
No 220
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.69 E-value=9.7e-06 Score=84.84 Aligned_cols=222 Identities=8% Similarity=0.039 Sum_probs=125.9
Q ss_pred cEEEEECCCCeEEEEecCCCCCccccccceEEE--EEEcCCeEEEEeCCC---CEEEEEeecCC-cceEEeeecceecCc
Q 046773 165 AVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSG--IIITDSQLIFATLDG---DIHVAVIDDVA-NETRTAHFGSVMDDG 238 (453)
Q Consensus 165 TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~--i~f~g~~LasgS~D~---tIkvWd~~~~g-~~~~~~~~~~v~~~~ 238 (453)
.|.++|.+.+. .+.+..+.. .+.. .++||+.|++.+.+. .|.+||+.+ | ...+....+..
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~--------~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~-g~~~~l~~~~g~~---- 245 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSRE--------PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDT-GRREQITNFEGLN---- 245 (430)
T ss_pred EEEEECCCCCC-ceEEecCCC--------ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCC-CCEEEccCCCCCc----
Confidence 57788887654 444543322 2333 345688898887653 477888876 4 22222111111
Q ss_pred eEEEEeCCCceeeEEEEeeCCC--eEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEEEcC-
Q 046773 239 VLIDFTGCSRYWVGLYAGLAGR--AFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVACTS- 313 (453)
Q Consensus 239 ~~v~Fs~dg~~~~~LaSgS~D~--tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~vas~d- 313 (453)
....|+|||+.++ ++.+.++ .|.++|+++++... |..+........|+|++. +..+..
T Consensus 246 ~~~~~SpDG~~la--~~~~~~g~~~Iy~~d~~~~~~~~---------------lt~~~~~~~~~~~spDg~~i~f~s~~~ 308 (430)
T PRK00178 246 GAPAWSPDGSKLA--FVLSKDGNPEIYVMDLASRQLSR---------------VTNHPAIDTEPFWGKDGRTLYFTSDRG 308 (430)
T ss_pred CCeEECCCCCEEE--EEEccCCCceEEEEECCCCCeEE---------------cccCCCCcCCeEECCCCCEEEEEECCC
Confidence 1378999999743 3444444 68888999887321 222222334467887753 333432
Q ss_pred --CcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEE
Q 046773 314 --SRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMG 391 (453)
Q Consensus 314 --~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~ 391 (453)
..|.++|+.+++.. ++..........+++++|+.++..+... ....+.++|+.+++. ..++.. .......+
T Consensus 309 g~~~iy~~d~~~g~~~-~lt~~~~~~~~~~~Spdg~~i~~~~~~~----~~~~l~~~dl~tg~~-~~lt~~-~~~~~p~~ 381 (430)
T PRK00178 309 GKPQIYKVNVNGGRAE-RVTFVGNYNARPRLSADGKTLVMVHRQD----GNFHVAAQDLQRGSV-RILTDT-SLDESPSV 381 (430)
T ss_pred CCceEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEEccC----CceEEEEEECCCCCE-EEccCC-CCCCCceE
Confidence 25888899887642 2221122233457889999887766433 112567788888754 333322 12234578
Q ss_pred eeCCCeEEEEeC----CeEEEEECCCCeEEEEecccCC
Q 046773 392 CMNQGYALMCVE----GVIRVWEVEGGEYMYSFRERIG 425 (453)
Q Consensus 392 ~~~~~~lls~s~----~tIrlWD~~tG~~l~tL~gh~~ 425 (453)
+|+++.++.++. ..|.+.++. |+..+.|..+.+
T Consensus 382 spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g 418 (430)
T PRK00178 382 APNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQG 418 (430)
T ss_pred CCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCC
Confidence 899988876553 467777885 444455554433
No 221
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.67 E-value=8e-07 Score=93.74 Aligned_cols=233 Identities=15% Similarity=0.102 Sum_probs=144.9
Q ss_pred CCCCCCCCeEEEEEEec--CCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcC--CeEEEEeCCC
Q 046773 137 SDVDNPDGLTCRCLTLS--DLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITD--SQLIFATLDG 212 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs--~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g--~~LasgS~D~ 212 (453)
+||. |. |+|++++ |++.|||+.|+.|-||+-. .-.+|+--|. ..+.++.|.+ ..|+|+|...
T Consensus 50 KgHK--Dt--VycVAys~dGkrFASG~aDK~VI~W~~k---lEG~LkYSH~-------D~IQCMsFNP~~h~LasCsLsd 115 (1081)
T KOG1538|consen 50 KGHK--DT--VYCVAYAKDGKRFASGSADKSVIIWTSK---LEGILKYSHN-------DAIQCMSFNPITHQLASCSLSD 115 (1081)
T ss_pred cccc--ce--EEEEEEccCCceeccCCCceeEEEeccc---ccceeeeccC-------CeeeEeecCchHHHhhhcchhh
Confidence 5998 45 7899986 6899999999999999863 2234442232 3678888885 6799988753
Q ss_pred CEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeee
Q 046773 213 DIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTE 292 (453)
Q Consensus 213 tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~ 292 (453)
.-+|..+... ..-|...+ ....-++..||++ |+-|-.|+||.|-|-...+...-.. | -|
T Consensus 116 -FglWS~~qK~---V~K~kss~--R~~~CsWtnDGqy---lalG~~nGTIsiRNk~gEek~~I~R---p---------gg 174 (1081)
T KOG1538|consen 116 -FGLWSPEQKS---VSKHKSSS--RIICCSWTNDGQY---LALGMFNGTISIRNKNGEEKVKIER---P---------GG 174 (1081)
T ss_pred -ccccChhhhh---HHhhhhhe--eEEEeeecCCCcE---EEEeccCceEEeecCCCCcceEEeC---C---------CC
Confidence 3467654411 11111000 0112578889997 8889999999998754433111000 0 12
Q ss_pred eccceeEEEEcCCc-------eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceE
Q 046773 293 FTEFVGRVRVTSHE-------SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLA 365 (453)
Q Consensus 293 h~~~v~~v~~s~~~-------~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i 365 (453)
-.++|.+|+++|.. +.++....|...+-+. |+.+-..+.-+-.-.+.+.-++|+.+..+++|+ ..
T Consensus 175 ~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk-------~L 246 (1081)
T KOG1538|consen 175 SNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDK-------QL 246 (1081)
T ss_pred CCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCC-------ce
Confidence 34789999998643 2333444666666665 233321100000111344557899999999998 77
Q ss_pred EEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEE-eCCeEEEEECCC
Q 046773 366 IVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMC-VEGVIRVWEVEG 413 (453)
Q Consensus 366 ~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~-s~~tIrlWD~~t 413 (453)
+++.- .|-.+.++.-.+.|+-++...|++.+.+.+ -+|||--+++..
T Consensus 247 ~~fTR-~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 247 SLFTR-DGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred EEEee-cCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 77732 344555555556788889999988877654 459998888753
No 222
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.64 E-value=2.2e-06 Score=89.60 Aligned_cols=189 Identities=12% Similarity=0.074 Sum_probs=121.7
Q ss_pred EEEeeCCCeEEEeeCCCCcEEecc----cccCCcceeeeeeeeeecccee------EEEEcCCce--EEEEcCCcEEEEE
Q 046773 253 LYAGLAGRAFHIWDRQAEEVFVGG----DLTDHNTVMGWRMLTEFTEFVG------RVRVTSHES--AVACTSSRVITFD 320 (453)
Q Consensus 253 LaSgS~D~tIrvWD~~tg~~~~g~----~l~~~~~v~~w~~l~~h~~~v~------~v~~s~~~~--~vas~d~tIrlWD 320 (453)
+|..+.|+-+||||.++++...+- .+.+..+..-|. |..-..+.. ....+.++. +.+...+.|-+++
T Consensus 8 ~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~-L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys 86 (541)
T KOG4547|consen 8 FALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWG-LSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYS 86 (541)
T ss_pred EeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEE-EEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEE
Confidence 566778999999999998844321 111212222232 110000000 001123333 3333457899999
Q ss_pred CCCCceEEEEeeccCCeEEEEEEec--CCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeE
Q 046773 321 LRNQGMVLGERGYGRGLYVTSVDVN--AEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYA 398 (453)
Q Consensus 321 l~t~~~~~~~~g~~~~~~v~~~~~~--g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~l 398 (453)
+..|+.-..+..-.|...|++.... -..+.|+++|. .+-.|+..+...++.....+..+.++..++|++.+
T Consensus 87 ~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~-------~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 87 VAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADL-------KVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL 159 (541)
T ss_pred ecCCeEEEEEecCCCCCcceeeecccccCceEecCCce-------eEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence 9987654445433445566665433 34577888888 88889998888888888777778889999997765
Q ss_pred EEEeCCeEEEEECCCCeEEEEecccCCceEEEEe--cC-----CCEEEEE--eCCcEEEEec
Q 046773 399 LMCVEGVIRVWEVEGGEYMYSFRERIGEEVIAFV--GD-----DRHVAAS--CGTNIHLWDF 451 (453)
Q Consensus 399 ls~s~~tIrlWD~~tG~~l~tL~gh~~~~V~a~s--~d-----~~~lasg--~D~~IklWDl 451 (453)
+ .++++|++||+++++.+.+|+||.+. |.+++ .+ |.++.++ .+.-|-+|-+
T Consensus 160 ~-~as~~ik~~~~~~kevv~~ftgh~s~-v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v 219 (541)
T KOG4547|consen 160 L-TASRQIKVLDIETKEVVITFTGHGSP-VRTLSFTTLIDGIIGKYVLSSAAAERGITVWVV 219 (541)
T ss_pred E-eccceEEEEEccCceEEEEecCCCcc-eEEEEEEEeccccccceeeeccccccceeEEEE
Confidence 5 44489999999999999999999998 88544 33 5565544 5666667743
No 223
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.63 E-value=4.4e-06 Score=78.36 Aligned_cols=116 Identities=11% Similarity=0.145 Sum_probs=82.9
Q ss_pred cceeEEEEcCCce--EEEEc--CCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEc
Q 046773 295 EFVGRVRVTSHES--AVACT--SSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRV 370 (453)
Q Consensus 295 ~~v~~v~~s~~~~--~vas~--d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~ 370 (453)
++|..++++|++. ++..+ +..|.|||++ ++.+..+. ........++|+|+.+++++.++ ....+.+||.
T Consensus 60 ~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n----~~G~l~~wd~ 132 (194)
T PF08662_consen 60 GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGN----LNGDLEFWDV 132 (194)
T ss_pred CceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccC----CCcEEEEEEC
Confidence 5699999998763 33332 4689999997 34444432 22333467899999999987543 0127999999
Q ss_pred CCCeeEEEEEecCCCeeEEEEeeCCCeEEEEe-------CCeEEEEECCCCeEEEEe
Q 046773 371 DTFEEVCRFSLRADRNVNVMGCMNQGYALMCV-------EGVIRVWEVEGGEYMYSF 420 (453)
Q Consensus 371 ~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s-------~~tIrlWD~~tG~~l~tL 420 (453)
++.+.+.++.. .....+.++|+|+++++++ ++.++||+. +|++++..
T Consensus 133 ~~~~~i~~~~~--~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 133 RKKKKISTFEH--SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred CCCEEeecccc--CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence 99888877642 2367889999999999764 278999998 48887654
No 224
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.60 E-value=4.8e-07 Score=87.50 Aligned_cols=155 Identities=11% Similarity=0.085 Sum_probs=99.5
Q ss_pred EEEEEec---CCEEEEEeCCCcEEEEECCCCeE---EEEecCCCCCccccccceEEEEEEcC---CeEEEEeCCCCEEEE
Q 046773 147 CRCLTLS---DLYLACGFADGAVRLFDLTTRLH---VRTFRPQHSDRLGQFSRAVSGIIITD---SQLIFATLDGDIHVA 217 (453)
Q Consensus 147 v~~lafs---~~~LaSGS~D~TIrlWD~~tg~~---~~tl~gh~~~~~~~~s~~V~~i~f~g---~~LasgS~D~tIkvW 217 (453)
.+++.++ +++|.|.|-|.|.-|||+++|.. ...|-.|.+ .|-.|+|.. +..||.+.||.+|+.
T Consensus 153 lTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDK--------EV~DIaf~~~s~~~FASvgaDGSvRmF 224 (364)
T KOG0290|consen 153 LTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDK--------EVYDIAFLKGSRDVFASVGADGSVRMF 224 (364)
T ss_pred ccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCc--------ceeEEEeccCccceEEEecCCCcEEEE
Confidence 5666665 57999999999999999999843 334667766 466688863 467899999999999
Q ss_pred EeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCC-CeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccc
Q 046773 218 VIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAG-RAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEF 296 (453)
Q Consensus 218 d~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D-~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~ 296 (453)
|+.... |.-....+.- ...-++..+.+-+-.+.+|+=..| ..|.|-|++-.++.. -.|++|.+.
T Consensus 225 DLR~le-HSTIIYE~p~-~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpv-------------a~L~~H~a~ 289 (364)
T KOG0290|consen 225 DLRSLE-HSTIIYEDPS-PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPV-------------ARLRNHQAS 289 (364)
T ss_pred Eecccc-cceEEecCCC-CCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcce-------------ehhhcCccc
Confidence 997621 1111111100 001122222221111224443333 468899998766321 247899999
Q ss_pred eeEEEEcCCc---eEEEEcCCcEEEEECCCC
Q 046773 297 VGRVRVTSHE---SAVACTSSRVITFDLRNQ 324 (453)
Q Consensus 297 v~~v~~s~~~---~~vas~d~tIrlWDl~t~ 324 (453)
||.++..|.. +.++++|..+-+||+.+.
T Consensus 290 VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 290 VNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred ccceEecCCCCceeeecCCcceEEEEecccc
Confidence 9999998754 445555678999999864
No 225
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=3.5e-06 Score=84.31 Aligned_cols=251 Identities=12% Similarity=0.119 Sum_probs=159.0
Q ss_pred EEEEEec--C--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecC
Q 046773 147 CRCLTLS--D--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDV 222 (453)
Q Consensus 147 v~~lafs--~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~ 222 (453)
+..+.|. + ..|+-.+.|..+...+++.+.|...+.--....+ ....|.+++..+..|++|-.++.+.+|....+
T Consensus 58 is~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l--~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~ 135 (412)
T KOG3881|consen 58 ISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSL--GTKSIKGLKLADGTLITCVSSGNLQVRHDKSG 135 (412)
T ss_pred hhhheeecCCceeEeeccccCcccccccccCCcccccccccccccc--ccccccchhhcCCEEEEEecCCcEEEEeccCC
Confidence 5566664 3 3566667888888888888887766511000000 11245566666778999999999999998741
Q ss_pred Cc--ce---EEeeecceecCceEEEEeCCCceeeEEEEeeCC--CeEEEeeCCCCc-EEecccccCCcceeeeeeeeeec
Q 046773 223 AN--ET---RTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAG--RAFHIWDRQAEE-VFVGGDLTDHNTVMGWRMLTEFT 294 (453)
Q Consensus 223 g~--~~---~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D--~tIrvWD~~tg~-~~~g~~l~~~~~v~~w~~l~~h~ 294 (453)
-. .. ++.+.+ + ..|.-++.... .+|+|+.. +.++|||++..+ ++.+-.++.+. .+ |+ -.
T Consensus 136 d~hss~l~~la~g~g-~----~~~r~~~~~p~--Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~--L~---Lr-VP 202 (412)
T KOG3881|consen 136 DLHSSKLIKLATGPG-L----YDVRQTDTDPY--IVATGGKENINELKIWDLEQSKQIWSAKNVPNDR--LG---LR-VP 202 (412)
T ss_pred ccccccceeeecCCc-e----eeeccCCCCCc--eEecCchhcccceeeeecccceeeeeccCCCCcc--cc---ce-ee
Confidence 11 11 111111 0 11222333333 35678887 889999999876 55543333221 11 11 11
Q ss_pred cceeEEEEcCC---ceEEEEc-CCcEEEEECCCCceEEE-EeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEE
Q 046773 295 EFVGRVRVTSH---ESAVACT-SSRVITFDLRNQGMVLG-ERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRR 369 (453)
Q Consensus 295 ~~v~~v~~s~~---~~~vas~-d~tIrlWDl~t~~~~~~-~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~ 369 (453)
-|+..++|-+. ..++.+. .+.+|++|.+.++.... +..-.+......+.|+++.+.++..-+ .+...|
T Consensus 203 vW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g-------~l~~FD 275 (412)
T KOG3881|consen 203 VWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKG-------QLAKFD 275 (412)
T ss_pred eeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccc-------hhheec
Confidence 34556777543 4555555 47899999998754422 222233445566789999999998888 888999
Q ss_pred cCCCeeEEE-EEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEE
Q 046773 370 VDTFEEVCR-FSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYS 419 (453)
Q Consensus 370 ~~tg~~v~~-l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~t 419 (453)
...+..+.. +.+-...++++.-+|...++++|+- +.|||.|++|.+.|+.
T Consensus 276 ~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 276 LRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHK 327 (412)
T ss_pred ccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhh
Confidence 988765433 5555566888888888788888876 9999999999777654
No 226
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.59 E-value=3.1e-05 Score=77.22 Aligned_cols=94 Identities=11% Similarity=0.064 Sum_probs=76.2
Q ss_pred CcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEec--CCCeeEEEE
Q 046773 314 SRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLR--ADRNVNVMG 391 (453)
Q Consensus 314 ~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~--~~~v~~~~~ 391 (453)
+.|.|||+.+-+...+...|...+.+.+|+++|..+|+||..| ..|||..+.+|+.+.+|.-. +-.+.+++|
T Consensus 153 GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKG------TVIRVf~v~~G~kl~eFRRG~~~~~IySL~F 226 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKG------TVIRVFSVPEGQKLYEFRRGTYPVSIYSLSF 226 (391)
T ss_pred ceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCc------eEEEEEEcCCccEeeeeeCCceeeEEEEEEE
Confidence 7899999998655444566777788888999999999999888 26899999999998887532 234778999
Q ss_pred eeCCCeEEEEeC-CeEEEEECCC
Q 046773 392 CMNQGYALMCVE-GVIRVWEVEG 413 (453)
Q Consensus 392 ~~~~~~lls~s~-~tIrlWD~~t 413 (453)
++++.+|.+++. +||.|.-+++
T Consensus 227 s~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 227 SPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred CCCCCeEEEecCCCeEEEEEecc
Confidence 999998877777 9999997764
No 227
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.58 E-value=1.8e-05 Score=83.58 Aligned_cols=224 Identities=10% Similarity=0.044 Sum_probs=124.2
Q ss_pred CcEEEEECCCCeEEEEecCCCCCccccccceEE--EEEEcCCeEEEEeCC-C--CEEEEEeecCC-cceEEeeecceecC
Q 046773 164 GAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVS--GIIITDSQLIFATLD-G--DIHVAVIDDVA-NETRTAHFGSVMDD 237 (453)
Q Consensus 164 ~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~--~i~f~g~~LasgS~D-~--tIkvWd~~~~g-~~~~~~~~~~v~~~ 237 (453)
..|.++|...... +.+..+.. .+. .+++||++|++.+.+ + .|.++|+.+ | ...+....+.
T Consensus 198 ~~l~i~d~dG~~~-~~l~~~~~--------~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~t-g~~~~lt~~~g~---- 263 (448)
T PRK04792 198 YQLMIADYDGYNE-QMLLRSPE--------PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYT-QVREKVTSFPGI---- 263 (448)
T ss_pred eEEEEEeCCCCCc-eEeecCCC--------cccCceECCCCCEEEEEEecCCCcEEEEEECCC-CCeEEecCCCCC----
Confidence 3677778766543 44432221 122 245678889887654 3 366777766 4 2222211111
Q ss_pred ceEEEEeCCCceeeEEEEeeCCCe--EEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEEEc-
Q 046773 238 GVLIDFTGCSRYWVGLYAGLAGRA--FHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVACT- 312 (453)
Q Consensus 238 ~~~v~Fs~dg~~~~~LaSgS~D~t--IrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~vas~- 312 (453)
....+|+|||+.+ +++.+.++. |.++|+++++.. .+..+........|+|++. +..+.
T Consensus 264 ~~~~~wSPDG~~L--a~~~~~~g~~~Iy~~dl~tg~~~---------------~lt~~~~~~~~p~wSpDG~~I~f~s~~ 326 (448)
T PRK04792 264 NGAPRFSPDGKKL--ALVLSKDGQPEIYVVDIATKALT---------------RITRHRAIDTEPSWHPDGKSLIFTSER 326 (448)
T ss_pred cCCeeECCCCCEE--EEEEeCCCCeEEEEEECCCCCeE---------------ECccCCCCccceEECCCCCEEEEEECC
Confidence 1136899999974 345566664 777799888732 1222223345567888763 33343
Q ss_pred CC--cEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEE
Q 046773 313 SS--RVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVM 390 (453)
Q Consensus 313 d~--tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~ 390 (453)
++ .|.++|+.+++.. .+........-.+++++|+.++..+.+. ....|-+.++++++. ..++... ......
T Consensus 327 ~g~~~Iy~~dl~~g~~~-~Lt~~g~~~~~~~~SpDG~~l~~~~~~~----g~~~I~~~dl~~g~~-~~lt~~~-~d~~ps 399 (448)
T PRK04792 327 GGKPQIYRVNLASGKVS-RLTFEGEQNLGGSITPDGRSMIMVNRTN----GKFNIARQDLETGAM-QVLTSTR-LDESPS 399 (448)
T ss_pred CCCceEEEEECCCCCEE-EEecCCCCCcCeeECCCCCEEEEEEecC----CceEEEEEECCCCCe-EEccCCC-CCCCce
Confidence 23 4777788887532 2221222222357899999887765433 011333456666653 2333221 122346
Q ss_pred EeeCCCeEEEEeC----CeEEEEECCCCeEEEEecccCCc
Q 046773 391 GCMNQGYALMCVE----GVIRVWEVEGGEYMYSFRERIGE 426 (453)
Q Consensus 391 ~~~~~~~lls~s~----~tIrlWD~~tG~~l~tL~gh~~~ 426 (453)
++|++++++..+. ..+.++|+ +|+..+.+..+.+.
T Consensus 400 ~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~ 438 (448)
T PRK04792 400 VAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGE 438 (448)
T ss_pred ECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCC
Confidence 8899998876543 45788887 57777777655443
No 228
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.57 E-value=1.5e-08 Score=72.70 Aligned_cols=46 Identities=26% Similarity=0.572 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhhhhhhHhHhhhhhHHhhcccchhccCCchhHHHhhhh
Q 046773 47 EALAAQVAIEASRSVGRLAAAAALANVFQVCSTWRAVSRSDLLWHRLTRR 96 (453)
Q Consensus 47 ~~l~~~~~~~~~~~~~~~~~~~~l~~~aqv~~~W~~l~~~~~~w~~~~~~ 96 (453)
+.||.|+..+|+.|++ .++|+++++||+.|+.++.++.+|+++|.+
T Consensus 2 ~~LP~Eil~~If~~L~----~~dl~~~~~vcr~w~~~~~~~~lW~~~~~r 47 (47)
T PF12937_consen 2 SSLPDEILLEIFSYLD----PRDLLRLSLVCRRWRRIANDNSLWRRLCLR 47 (47)
T ss_dssp CCS-HHHHHHHHTTS-----HHHHHHHTTSSHHHHHHHTCCCHHHHHC--
T ss_pred hHhHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHHCChhhhhhhccC
Confidence 4699999999999986 779999999999999999998999998853
No 229
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.54 E-value=0.00092 Score=68.13 Aligned_cols=270 Identities=14% Similarity=0.118 Sum_probs=146.0
Q ss_pred EEEEeCC----CcEEEEEC--CCCeEE--EEecCCCCCccccccceEEEEEE--cCCeEEEEeC----CCCEEEEEeecC
Q 046773 157 LACGFAD----GAVRLFDL--TTRLHV--RTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATL----DGDIHVAVIDDV 222 (453)
Q Consensus 157 LaSGS~D----~TIrlWD~--~tg~~~--~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~----D~tIkvWd~~~~ 222 (453)
+..|||. +.|.++++ ++|+.. .++.... .-+.+++ ++++|.+... ++.|-.+.++..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~---------~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~ 72 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGE---------NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPD 72 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESS---------SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETT
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCC---------CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCC
Confidence 4556666 57777777 555532 2221111 1122555 5677777655 457888887753
Q ss_pred -C-cceEEeeecceecCceEEEEeCCCceeeEEEEee-CCCeEEEeeCCC-CcEEec-----ccccCCcceeeeeeeeee
Q 046773 223 -A-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGL-AGRAFHIWDRQA-EEVFVG-----GDLTDHNTVMGWRMLTEF 293 (453)
Q Consensus 223 -g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS-~D~tIrvWD~~t-g~~~~g-----~~l~~~~~v~~w~~l~~h 293 (453)
| +..+.... ..-...+.|+++|++++ |+++. .+++|.++++.. |.+..- +...+++ ..+.-
T Consensus 73 ~g~L~~~~~~~-~~g~~p~~i~~~~~g~~---l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~------~~rq~ 142 (345)
T PF10282_consen 73 TGTLTLLNSVP-SGGSSPCHIAVDPDGRF---LYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPN------PDRQE 142 (345)
T ss_dssp TTEEEEEEEEE-ESSSCEEEEEECTTSSE---EEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESS------TTTTS
T ss_pred cceeEEeeeec-cCCCCcEEEEEecCCCE---EEEEEccCCeEEEEEccCCcccceeeeecccCCCCCc------ccccc
Confidence 3 11111110 00012245899999997 45554 589999999987 552110 0000000 00111
Q ss_pred ccceeEEEEcCCce-EEEEc--CCcEEEEECCCCc--eEE--EE-eeccCCeEEEEEEecCCEEEEEe-CCCccccCcce
Q 046773 294 TEFVGRVRVTSHES-AVACT--SSRVITFDLRNQG--MVL--GE-RGYGRGLYVTSVDVNAEAYIVVE-NRELENQNRRL 364 (453)
Q Consensus 294 ~~~v~~v~~s~~~~-~vas~--d~tIrlWDl~t~~--~~~--~~-~g~~~~~~v~~~~~~g~~l~s~s-~dg~~~~~~~~ 364 (453)
....-++.|+|++. +.+.+ .+.|.++++.... ... .. ...+.+-.=..|+++++.+.+.. .++ +
T Consensus 143 ~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~-------~ 215 (345)
T PF10282_consen 143 GPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSN-------T 215 (345)
T ss_dssp STCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTT-------E
T ss_pred cccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCC-------c
Confidence 23445789999864 33332 3689999998754 211 11 11112222356888887765543 444 8
Q ss_pred EEEEEcC--CCe--eEEEEEecC------CCeeEEEEeeCCCeEEEEeC--CeEEEEEC--CCCeE--EEEecccCC-ce
Q 046773 365 AIVRRVD--TFE--EVCRFSLRA------DRNVNVMGCMNQGYALMCVE--GVIRVWEV--EGGEY--MYSFRERIG-EE 427 (453)
Q Consensus 365 i~Iw~~~--tg~--~v~~l~~~~------~~v~~~~~~~~~~~lls~s~--~tIrlWD~--~tG~~--l~tL~gh~~-~~ 427 (453)
|.+.+++ ++. .++.+...+ .....+.++++++++.++.. ++|-++++ ++|+. +..+.-.-. .+
T Consensus 216 v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr 295 (345)
T PF10282_consen 216 VSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPR 295 (345)
T ss_dssp EEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEE
T ss_pred EEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCcc
Confidence 8888887 442 333333221 13456788999999877654 89999999 34533 333321111 21
Q ss_pred EEEEecCCCEEEEE--eCCcEEEEecC
Q 046773 428 VIAFVGDDRHVAAS--CGTNIHLWDFG 452 (453)
Q Consensus 428 V~a~s~d~~~lasg--~D~~IklWDl~ 452 (453)
=.+|+|||++|+.+ .+++|.++++.
T Consensus 296 ~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 296 HFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 22778999998766 67899999764
No 230
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.54 E-value=7.8e-07 Score=85.96 Aligned_cols=152 Identities=11% Similarity=0.129 Sum_probs=101.0
Q ss_pred eeccceeEEEEcCCceEEEEc-CCcEEEEECCCCceEEEE------eeccCCeEEEEEEe--cCCEEEEEeCCCccccCc
Q 046773 292 EFTEFVGRVRVTSHESAVACT-SSRVITFDLRNQGMVLGE------RGYGRGLYVTSVDV--NAEAYIVVENRELENQNR 362 (453)
Q Consensus 292 ~h~~~v~~v~~s~~~~~vas~-d~tIrlWDl~t~~~~~~~------~g~~~~~~v~~~~~--~g~~l~s~s~dg~~~~~~ 362 (453)
.+.+.++||-+.|++.-++|. |..|.+|+++....+..+ .++.+...--..+| +++.++ ...|+
T Consensus 121 eavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~-tt~d~------ 193 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVA-TTSDS------ 193 (370)
T ss_pred HHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEE-EeCCC------
Confidence 344678999999988666664 578999999987553222 11222211122344 344444 45667
Q ss_pred ceEEEEEcCCCeeEEEE-EecCCCeeEEEEeeCCCeE-EEEeC-CeEEEEECCC-CeEEEEecccCCceEEEEe--c-CC
Q 046773 363 RLAIVRRVDTFEEVCRF-SLRADRNVNVMGCMNQGYA-LMCVE-GVIRVWEVEG-GEYMYSFRERIGEEVIAFV--G-DD 435 (453)
Q Consensus 363 ~~i~Iw~~~tg~~v~~l-~~~~~~v~~~~~~~~~~~l-ls~s~-~tIrlWD~~t-G~~l~tL~gh~~~~V~a~s--~-d~ 435 (453)
+++-||..|-.+...+ ..|...|+.+-|.|+-.+. ++|++ +-|||||+.. ...+.+|++|..+ ||++. | -+
T Consensus 194 -tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHW-vW~VRfn~~hd 271 (370)
T KOG1007|consen 194 -TLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHW-VWAVRFNPEHD 271 (370)
T ss_pred -cEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceE-EEEEEecCccc
Confidence 9999998875443332 3345557777777765544 46677 9999999985 4668999999999 99765 3 33
Q ss_pred CEEEEE-eCCcEEEEecC
Q 046773 436 RHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 436 ~~lasg-~D~~IklWDl~ 452 (453)
+.|.|+ +|..|.||..+
T Consensus 272 qLiLs~~SDs~V~Lsca~ 289 (370)
T KOG1007|consen 272 QLILSGGSDSAVNLSCAS 289 (370)
T ss_pred eEEEecCCCceeEEEecc
Confidence 456677 99999999654
No 231
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.53 E-value=0.00019 Score=68.17 Aligned_cols=220 Identities=14% Similarity=0.189 Sum_probs=125.9
Q ss_pred CCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCCcceEEee-ecceecCceE
Q 046773 162 ADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVANETRTAH-FGSVMDDGVL 240 (453)
Q Consensus 162 ~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g~~~~~~~-~~~v~~~~~~ 240 (453)
.+++|..||+.+|+.+....-... .+ ..+.....++..++.++.++.+..+|..+ |....+.- .+.+.. .
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~--~~---~~~~~~~~~~~~v~~~~~~~~l~~~d~~t-G~~~W~~~~~~~~~~-~-- 71 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPG--IG---GPVATAVPDGGRVYVASGDGNLYALDAKT-GKVLWRFDLPGPISG-A-- 71 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSS--CS---SEEETEEEETTEEEEEETTSEEEEEETTT-SEEEEEEECSSCGGS-G--
T ss_pred CCCEEEEEECCCCCEEEEEECCCC--CC---CccceEEEeCCEEEEEcCCCEEEEEECCC-CCEEEEeeccccccc-e--
Confidence 378999999999999988742110 01 11211223677888888999999999877 61111111 111100 0
Q ss_pred EEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeee-eee---e-ccceeEEEEcCCceEEEEcCCc
Q 046773 241 IDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRM-LTE---F-TEFVGRVRVTSHESAVACTSSR 315 (453)
Q Consensus 241 v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~-l~~---h-~~~v~~v~~s~~~~~vas~d~t 315 (453)
. ...+++ ++.++.|+.|..+|.++|+.+ |.. ... . ........+.++.++++..++.
T Consensus 72 ~-~~~~~~----v~v~~~~~~l~~~d~~tG~~~-------------W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 133 (238)
T PF13360_consen 72 P-VVDGGR----VYVGTSDGSLYALDAKTGKVL-------------WSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGK 133 (238)
T ss_dssp E-EEETTE----EEEEETTSEEEEEETTTSCEE-------------EEEEE-SSCTCSTB--SEEEEETTEEEEEETCSE
T ss_pred e-eecccc----cccccceeeeEecccCCccee-------------eeeccccccccccccccCceEecCEEEEEeccCc
Confidence 1 111222 456668889999999999953 221 111 0 0112234445555666677899
Q ss_pred EEEEECCCCceEEEEeeccCC--eE-------EEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCe
Q 046773 316 VITFDLRNQGMVLGERGYGRG--LY-------VTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRN 386 (453)
Q Consensus 316 IrlWDl~t~~~~~~~~g~~~~--~~-------v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v 386 (453)
|...|+++|+.+-........ .. ...+...++.+...+.++ +.+.+ |..+++.+-... ....
T Consensus 134 l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g------~~~~~-d~~tg~~~w~~~--~~~~ 204 (238)
T PF13360_consen 134 LVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG------RVVAV-DLATGEKLWSKP--ISGI 204 (238)
T ss_dssp EEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS------SEEEE-ETTTTEEEEEEC--SS-E
T ss_pred EEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC------eEEEE-ECCCCCEEEEec--CCCc
Confidence 999999999776554222211 10 122333344666656566 14667 999998654322 2222
Q ss_pred eEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEE
Q 046773 387 VNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMY 418 (453)
Q Consensus 387 ~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~ 418 (453)
.. ....+++.+...+. +.|..||++||+.+-
T Consensus 205 ~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 205 YS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp CE-CEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred cC-CceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 22 12346677776665 999999999999764
No 232
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.53 E-value=2.8e-05 Score=81.69 Aligned_cols=188 Identities=9% Similarity=-0.018 Sum_probs=108.1
Q ss_pred EEEeCCCceeeEEEEeeCCC--eEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEE--Ec-CC-
Q 046773 241 IDFTGCSRYWVGLYAGLAGR--AFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVA--CT-SS- 314 (453)
Q Consensus 241 v~Fs~dg~~~~~LaSgS~D~--tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~va--s~-d~- 314 (453)
-.|||||+....++....++ .|-+.|+.+|+.. .+....+.....+++|++..++ ++ ++
T Consensus 190 P~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~---------------~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~ 254 (428)
T PRK01029 190 PTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK---------------KILALQGNQLMPTFSPRKKLLAFISDRYGN 254 (428)
T ss_pred ceEccCCCceEEEEEEccCCCceEEEEECCCCCce---------------EeecCCCCccceEECCCCCEEEEEECCCCC
Confidence 58999998644334433333 4666688888721 1112223334567898874333 32 12
Q ss_pred -c--EEEEECCCC--ceEEEEe-eccCCeEEEEEEecCCEEEEEeC-CCccccCcceEEEEEcC--C-CeeEEEEEecCC
Q 046773 315 -R--VITFDLRNQ--GMVLGER-GYGRGLYVTSVDVNAEAYIVVEN-RELENQNRRLAIVRRVD--T-FEEVCRFSLRAD 384 (453)
Q Consensus 315 -t--IrlWDl~t~--~~~~~~~-g~~~~~~v~~~~~~g~~l~s~s~-dg~~~~~~~~i~Iw~~~--t-g~~v~~l~~~~~ 384 (453)
. +.+||+.++ +....+. +......-.+++|+|+.++..+. ++ ..+||.++ . +.....++....
T Consensus 255 ~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g-------~~~ly~~~~~~~g~~~~~lt~~~~ 327 (428)
T PRK01029 255 PDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDG-------RPRIYIMQIDPEGQSPRLLTKKYR 327 (428)
T ss_pred cceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCC-------CceEEEEECcccccceEEeccCCC
Confidence 2 455888763 2222221 11111122578999998877664 44 45666543 2 233444554444
Q ss_pred CeeEEEEeeCCCeEEEEeC----CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEE-EE-e--CCcEEEEecC
Q 046773 385 RNVNVMGCMNQGYALMCVE----GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVA-AS-C--GTNIHLWDFG 452 (453)
Q Consensus 385 ~v~~~~~~~~~~~lls~s~----~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~la-sg-~--D~~IklWDl~ 452 (453)
.+....++||+++++.++. ..|.+||+++|++.....+ ... +. +++|||+.|+ ++ . +..|.++|+.
T Consensus 328 ~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~-~~~-~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 328 NSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS-PEN-KESPSWAIDSLHLVYSAGNSNESELYLISLI 403 (428)
T ss_pred CccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC-CCC-ccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 4566788999998886653 5799999999977443222 222 22 6789999886 33 3 3567777763
No 233
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.52 E-value=4.5e-05 Score=79.00 Aligned_cols=222 Identities=11% Similarity=0.017 Sum_probs=125.2
Q ss_pred CCcEEEEECCCCeEEEEecCCCCCccccccceEEE--EEEcCCeEEEEeCC---CCEEEEEeecCC-cceEEeeecceec
Q 046773 163 DGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSG--IIITDSQLIFATLD---GDIHVAVIDDVA-NETRTAHFGSVMD 236 (453)
Q Consensus 163 D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~--i~f~g~~LasgS~D---~tIkvWd~~~~g-~~~~~~~~~~v~~ 236 (453)
...|.++|...+. .+.+..+.. .+.. ++++|+.|++.+.+ .+|++||+.+ | ...+..+.+..
T Consensus 169 ~~~l~~~d~~g~~-~~~l~~~~~--------~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~-g~~~~~~~~~~~~-- 236 (417)
T TIGR02800 169 RYELQVADYDGAN-PQTITRSRE--------PILSPAWSPDGQKLAYVSFESGKPEIYVQDLAT-GQREKVASFPGMN-- 236 (417)
T ss_pred cceEEEEcCCCCC-CEEeecCCC--------ceecccCCCCCCEEEEEEcCCCCcEEEEEECCC-CCEEEeecCCCCc--
Confidence 4567888886444 445543332 1222 44578889988764 3689999887 4 22222222211
Q ss_pred CceEEEEeCCCceeeEEEEeeCC--CeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEEEc
Q 046773 237 DGVLIDFTGCSRYWVGLYAGLAG--RAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVACT 312 (453)
Q Consensus 237 ~~~~v~Fs~dg~~~~~LaSgS~D--~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~vas~ 312 (453)
..++|+|||+.+ +++.+.+ ..|.+||+.+++.. .+..+.......+|+|++. +..+.
T Consensus 237 --~~~~~spDg~~l--~~~~~~~~~~~i~~~d~~~~~~~---------------~l~~~~~~~~~~~~s~dg~~l~~~s~ 297 (417)
T TIGR02800 237 --GAPAFSPDGSKL--AVSLSKDGNPDIYVMDLDGKQLT---------------RLTNGPGIDTEPSWSPDGKSIAFTSD 297 (417)
T ss_pred --cceEECCCCCEE--EEEECCCCCccEEEEECCCCCEE---------------ECCCCCCCCCCEEECCCCCEEEEEEC
Confidence 137899999873 3444444 45888999887631 1122222333456777653 33343
Q ss_pred C-C--cEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEE
Q 046773 313 S-S--RVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNV 389 (453)
Q Consensus 313 d-~--tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~ 389 (453)
. + .|.++|+.+++. ..+..+........++++++.++..+.++ ....+.+++.+++.. ..+.. .......
T Consensus 298 ~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~----~~~~i~~~d~~~~~~-~~l~~-~~~~~~p 370 (417)
T TIGR02800 298 RGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREG----GGFNIAVMDLDGGGE-RVLTD-TGLDESP 370 (417)
T ss_pred CCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccC----CceEEEEEeCCCCCe-EEccC-CCCCCCc
Confidence 2 2 588889987653 23322233333456788898888776543 112566777777543 22222 1223445
Q ss_pred EEeeCCCeEEEEeC----CeEEEEECCCCeEEEEeccc
Q 046773 390 MGCMNQGYALMCVE----GVIRVWEVEGGEYMYSFRER 423 (453)
Q Consensus 390 ~~~~~~~~lls~s~----~tIrlWD~~tG~~l~tL~gh 423 (453)
.+++++++++..+. ..+.+.+. +|+....+..+
T Consensus 371 ~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~~~ 407 (417)
T TIGR02800 371 SFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLPLG 407 (417)
T ss_pred eECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECCCC
Confidence 78889998886654 34555554 45555555433
No 234
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.52 E-value=1.4e-06 Score=89.14 Aligned_cols=241 Identities=15% Similarity=0.159 Sum_probs=146.2
Q ss_pred EEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecCCcceEE---eeecceecCceEEEEeCCCceeeE
Q 046773 178 RTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDVANETRT---AHFGSVMDDGVLIDFTGCSRYWVG 252 (453)
Q Consensus 178 ~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g~~~~~---~~~~~v~~~~~~v~Fs~dg~~~~~ 252 (453)
..|.+|++ .|..|.|. |+.|+|||.|..|.||||.. +...+. +|...+...+ .|-|+.|. .
T Consensus 136 ~kL~~H~G--------cVntV~FN~~Gd~l~SgSDD~~vv~WdW~~-~~~~l~f~SGH~~NvfQaK-FiP~s~d~----t 201 (559)
T KOG1334|consen 136 KKLNKHKG--------CVNTVHFNQRGDVLASGSDDLQVVVWDWVS-GSPKLSFESGHCNNVFQAK-FIPFSGDR----T 201 (559)
T ss_pred hcccCCCC--------ccceeeecccCceeeccCccceEEeehhhc-cCcccccccccccchhhhh-ccCCCCCc----C
Confidence 45666664 68888886 88999999999999999987 433344 4544443322 35566663 3
Q ss_pred EEEeeCCCeEEEeeCC-CCcEEecccccCCcceeeeeeeeeeccceeEEEEcCC---ceEEEEcCCcEEEEECCCCceE-
Q 046773 253 LYAGLAGRAFHIWDRQ-AEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSH---ESAVACTSSRVITFDLRNQGMV- 327 (453)
Q Consensus 253 LaSgS~D~tIrvWD~~-tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~---~~~vas~d~tIrlWDl~t~~~~- 327 (453)
|++.+.|+.||+=.+- +|.+- ++ ..+..|.++|..+++.|+ .+.+++.|+.++-.|++++.-.
T Consensus 202 i~~~s~dgqvr~s~i~~t~~~e--------~t----~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~ 269 (559)
T KOG1334|consen 202 IVTSSRDGQVRVSEILETGYVE--------NT----KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAE 269 (559)
T ss_pred ceeccccCceeeeeecccccee--------cc----eecccccCccceeeecCCCCCcccccccccceeeeeeccCCccc
Confidence 7888999999986543 33321 00 224567788988887654 4566667888999999876321
Q ss_pred -EEEeeccCC--eEE--EEEEecCC-EEEEEeCCCccccCcceEEEEEcCCCe------eEEEEEe------cCCCeeEE
Q 046773 328 -LGERGYGRG--LYV--TSVDVNAE-AYIVVENRELENQNRRLAIVRRVDTFE------EVCRFSL------RADRNVNV 389 (453)
Q Consensus 328 -~~~~g~~~~--~~v--~~~~~~g~-~l~s~s~dg~~~~~~~~i~Iw~~~tg~------~v~~l~~------~~~~v~~~ 389 (453)
...+-+... +.. .+++|... .++++..|. -+||+|...-. .+..|.. .+-.|..+
T Consensus 270 ~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dq-------f~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl 342 (559)
T KOG1334|consen 270 KFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQ-------FARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGL 342 (559)
T ss_pred eeeeeccCCccceeeeeEecCCCCccccccCChhh-------hhhhhcccchhhccccchhhhcCCccccccCcccceeE
Confidence 111111111 222 33445544 456666666 66777654211 1122211 12236677
Q ss_pred EEeeCCCeEEEE-eCCeEEEEECC--CC----------eEEE-EecccCCc----eEEEEecCCCEEEEEeC-CcEEEEe
Q 046773 390 MGCMNQGYALMC-VEGVIRVWEVE--GG----------EYMY-SFRERIGE----EVIAFVGDDRHVAASCG-TNIHLWD 450 (453)
Q Consensus 390 ~~~~~~~~lls~-s~~tIrlWD~~--tG----------~~l~-tL~gh~~~----~V~a~s~d~~~lasg~D-~~IklWD 450 (453)
+++-+++-++++ ++--|.|..-. .| ..+. .++||... .|+-|-|...+|+||+| |.|.|||
T Consensus 343 ~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 343 VYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWD 422 (559)
T ss_pred EecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEe
Confidence 777566555544 45778888433 24 2222 26789654 25566788899999955 8999998
Q ss_pred c
Q 046773 451 F 451 (453)
Q Consensus 451 l 451 (453)
-
T Consensus 423 K 423 (559)
T KOG1334|consen 423 K 423 (559)
T ss_pred c
Confidence 4
No 235
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.48 E-value=0.00011 Score=85.16 Aligned_cols=253 Identities=13% Similarity=0.084 Sum_probs=141.6
Q ss_pred EEEec---CCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCc--ccccc----ceEEEEEEc--CCeEEEE-eCCCCEEE
Q 046773 149 CLTLS---DLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDR--LGQFS----RAVSGIIIT--DSQLIFA-TLDGDIHV 216 (453)
Q Consensus 149 ~lafs---~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~--~~~~s----~~V~~i~f~--g~~Lasg-S~D~tIkv 216 (453)
-++++ +++.++-+..+.|+++|.. |+.+.++.+-.... -|.+. ..-.+|+++ +..|+.+ +..+.|++
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 35664 3578888999999999986 55555554311100 01000 012457775 4555544 34466888
Q ss_pred EEeecCC-cceEEee--ec-----------ceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcE--Eeccccc-
Q 046773 217 AVIDDVA-NETRTAH--FG-----------SVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEV--FVGGDLT- 279 (453)
Q Consensus 217 Wd~~~~g-~~~~~~~--~~-----------~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~--~~g~~l~- 279 (453)
.|..+ + +.++.+- .+ .......-|+|+|++.. .+++.+.++.|++||..++.+ +.|....
T Consensus 651 id~~~-~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~--LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 651 IDFVN-ETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEK--VYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EecCC-CEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCe--EEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 88765 3 3333221 00 00111224899995433 245777889999999998873 3221100
Q ss_pred CCcceeeeeeeeeeccceeEEEEcCCc--eEEEEc-CCcEEEEECCCCceEEEEeecc---------------------C
Q 046773 280 DHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACT-SSRVITFDLRNQGMVLGERGYG---------------------R 335 (453)
Q Consensus 280 ~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~-d~tIrlWDl~t~~~~~~~~g~~---------------------~ 335 (453)
..+... .. .........|+++|++ ++++.. +++|++||+++++......+.. .
T Consensus 728 ~~~g~~--~~-~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~ 804 (1057)
T PLN02919 728 NLNGSS--GT-STSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQ 804 (1057)
T ss_pred cCCCCc--cc-cccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhcc
Confidence 000000 00 0011234568898875 555544 4799999999865321110000 0
Q ss_pred CeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecC--------------CCeeEEEEeeCCCeEEEE
Q 046773 336 GLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRA--------------DRNVNVMGCMNQGYALMC 401 (453)
Q Consensus 336 ~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~--------------~~v~~~~~~~~~~~lls~ 401 (453)
.-.-.+++++|+.+++-+.++ .|++||.+++... ++...+ +....+++++++..+++-
T Consensus 805 ~P~Gvavd~dG~LYVADs~N~-------rIrviD~~tg~v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaD 876 (1057)
T PLN02919 805 HPLGVLCAKDGQIYVADSYNH-------KIKKLDPATKRVT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVAD 876 (1057)
T ss_pred CCceeeEeCCCcEEEEECCCC-------EEEEEECCCCeEE-EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEE
Confidence 001245677788777777777 9999999887543 222211 123456777787755555
Q ss_pred eC-CeEEEEECCCCeE
Q 046773 402 VE-GVIRVWEVEGGEY 416 (453)
Q Consensus 402 s~-~tIrlWD~~tG~~ 416 (453)
+. ++|++||+++++.
T Consensus 877 t~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 877 TNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCCEEEEEECCCCcc
Confidence 55 9999999999865
No 236
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.48 E-value=1e-05 Score=83.92 Aligned_cols=253 Identities=11% Similarity=0.074 Sum_probs=147.0
Q ss_pred EEEEEecC-CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE----cCCeEEEEeCCCCEEEEEeec
Q 046773 147 CRCLTLSD-LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII----TDSQLIFATLDGDIHVAVIDD 221 (453)
Q Consensus 147 v~~lafs~-~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f----~g~~LasgS~D~tIkvWd~~~ 221 (453)
|.|+..+. .-+...+.|..+-+|.-.+.+....+.-.... =|....+.+... ..+.++-+|.|+.+.+-+-..
T Consensus 17 vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df--~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~k~~ 94 (737)
T KOG1524|consen 17 VCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDF--VPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILNKSA 94 (737)
T ss_pred EEeecccccceEEEeccCceEEEeecccchhhhhhhCCccc--CCccccccccccCCCCCcceEEEEcCCceEEEecccc
Confidence 45777765 34556666766666665455443333211110 000000000111 124677788999877654322
Q ss_pred CCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEE
Q 046773 222 VANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVR 301 (453)
Q Consensus 222 ~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~ 301 (453)
.-.+....|.+.+.. -..+|||.- |.+.+.|+-||||.- +|-+. -++.....+|.|++
T Consensus 95 rVE~sv~AH~~A~~~----gRW~~dGtg---Llt~GEDG~iKiWSr-sGMLR--------------Stl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 95 RVERSISAHAAAISS----GRWSPDGAG---LLTAGEDGVIKIWSR-SGMLR--------------STVVQNEESIRCAR 152 (737)
T ss_pred hhhhhhhhhhhhhhh----cccCCCCce---eeeecCCceEEEEec-cchHH--------------HHHhhcCceeEEEE
Confidence 002333346554432 257888874 889999999999974 55411 12334457899999
Q ss_pred EcCCce-EEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEec--CCEEEEEeCCCccccCcceEEEEEcCCCeeEEE
Q 046773 302 VTSHES-AVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVN--AEAYIVVENRELENQNRRLAIVRRVDTFEEVCR 378 (453)
Q Consensus 302 ~s~~~~-~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~--g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~ 378 (453)
..|+.. ++=|..+.+-+=-|..+..+++-+.| ...|.+++.+ .+.+++++.|- --||||.- |+.+.+
T Consensus 153 W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAH--DGiiL~~~W~~~s~lI~sgGED~-------kfKvWD~~-G~~Lf~ 222 (737)
T KOG1524|consen 153 WAPNSNSIVFCQGGHISIKPLAANSKIIRWRAH--DGLVLSLSWSTQSNIIASGGEDF-------RFKIWDAQ-GANLFT 222 (737)
T ss_pred ECCCCCceEEecCCeEEEeecccccceeEEecc--CcEEEEeecCccccceeecCCce-------eEEeeccc-Cccccc
Confidence 998763 45466555555456555455554544 4566777655 56777777666 77888764 455555
Q ss_pred EEecCCCeeEEEEeeCCCeEEEEeCCeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCcE
Q 046773 379 FSLRADRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNI 446 (453)
Q Consensus 379 l~~~~~~v~~~~~~~~~~~lls~s~~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~I 446 (453)
-..|+..+.++++.|+ ...+..|-+|+|+=.+ ..+. |. +.||||..++.| .-|.+
T Consensus 223 S~~~ey~ITSva~npd-~~~~v~S~nt~R~~~p-----------~~GS-ifnlsWS~DGTQ~a~gt~~G~v 280 (737)
T KOG1524|consen 223 SAAEEYAITSVAFNPE-KDYLLWSYNTARFSSP-----------RVGS-IFNLSWSADGTQATCGTSTGQL 280 (737)
T ss_pred CChhccceeeeeeccc-cceeeeeeeeeeecCC-----------Cccc-eEEEEEcCCCceeeccccCceE
Confidence 4556666889999888 3333344477772222 2455 55 678999999988 65544
No 237
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.47 E-value=2.5e-05 Score=76.61 Aligned_cols=176 Identities=15% Similarity=0.201 Sum_probs=106.8
Q ss_pred CcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCCcceEEeeecceecCceEEEE
Q 046773 164 GAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDF 243 (453)
Q Consensus 164 ~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~F 243 (453)
+.+-|||=...+|+.+|. +...|.+|.++.++|+. -..+.|+||.... .++.++.-.....+.+ +.+.
T Consensus 75 NkviIWDD~k~~~i~el~---------f~~~I~~V~l~r~riVv-vl~~~I~VytF~~-n~k~l~~~et~~NPkG-lC~~ 142 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS---------FNSEIKAVKLRRDRIVV-VLENKIYVYTFPD-NPKLLHVIETRSNPKG-LCSL 142 (346)
T ss_pred ceEEEEecccCcEEEEEE---------eccceeeEEEcCCeEEE-EecCeEEEEEcCC-ChhheeeeecccCCCc-eEee
Confidence 578899988888888875 22368889999887765 3678899998764 1111111111101111 1122
Q ss_pred eCCCceeeEEE-EeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEE--EcCCc-EEEE
Q 046773 244 TGCSRYWVGLY-AGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVA--CTSSR-VITF 319 (453)
Q Consensus 244 s~dg~~~~~La-SgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~va--s~d~t-IrlW 319 (453)
.|.....+ || =|--=+.|+|=|+..-+. + .| ..+..|.+.+.||+++-++.++| |..+| ||||
T Consensus 143 ~~~~~k~~-LafPg~k~GqvQi~dL~~~~~--~----~p------~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIF 209 (346)
T KOG2111|consen 143 CPTSNKSL-LAFPGFKTGQVQIVDLASTKP--N----AP------SIINAHDSDIACVALNLQGTLVATASTKGTLIRIF 209 (346)
T ss_pred cCCCCceE-EEcCCCccceEEEEEhhhcCc--C----Cc------eEEEcccCceeEEEEcCCccEEEEeccCcEEEEEE
Confidence 22211101 11 122225677777665431 0 01 23568989999999997776655 44576 9999
Q ss_pred ECCCCceEEEE-eeccC-CeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcC
Q 046773 320 DLRNQGMVLGE-RGYGR-GLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVD 371 (453)
Q Consensus 320 Dl~t~~~~~~~-~g~~~-~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~ 371 (453)
|.++|+.+..+ +|..+ .++..+|+++...++.+|.-| |+.|..+.
T Consensus 210 dt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKg-------TlHiF~l~ 256 (346)
T KOG2111|consen 210 DTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKG-------TLHIFSLR 256 (346)
T ss_pred EcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCC-------eEEEEEee
Confidence 99999876554 45333 344555667677888888888 99988654
No 238
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.47 E-value=3.5e-07 Score=94.68 Aligned_cols=156 Identities=15% Similarity=0.123 Sum_probs=107.3
Q ss_pred eeeeeccceeEEEEcCCceEEE--EcCCcEEEEECCCCceEEEE-eeccCCeEEEEEEec--CCEEEEEeCCCccccCcc
Q 046773 289 MLTEFTEFVGRVRVTSHESAVA--CTSSRVITFDLRNQGMVLGE-RGYGRGLYVTSVDVN--AEAYIVVENRELENQNRR 363 (453)
Q Consensus 289 ~l~~h~~~v~~v~~s~~~~~va--s~d~tIrlWDl~t~~~~~~~-~g~~~~~~v~~~~~~--g~~l~s~s~dg~~~~~~~ 363 (453)
.|+||++.||++..+.++.+++ |+|..+-|||.-..+.++.. +||+..+....|-|. .+.++++++|.
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk------- 117 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDK------- 117 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcc-------
Confidence 4789999999999987775444 45567999999877766665 889887776667654 34567777777
Q ss_pred eEEEEEcCCC----------eeEEEEEecCCCeeEEEEeeCC-CeEEEEeC-CeEEEEECCCC-------eEEEEecccC
Q 046773 364 LAIVRRVDTF----------EEVCRFSLRADRNVNVMGCMNQ-GYALMCVE-GVIRVWEVEGG-------EYMYSFRERI 424 (453)
Q Consensus 364 ~i~Iw~~~tg----------~~v~~l~~~~~~v~~~~~~~~~-~~lls~s~-~tIrlWD~~tG-------~~l~tL~gh~ 424 (453)
-|++.|++.- +....+..|.+.|..++.+|++ ..+.+++. ||||=.|+..- .|...|..-.
T Consensus 118 ~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~ 197 (758)
T KOG1310|consen 118 LIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYN 197 (758)
T ss_pred eEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhc
Confidence 9999998841 2233344556667788888866 45556776 99999999852 2322222212
Q ss_pred CceEE----EEecCC-CEEEEE-eCCcEEEEec
Q 046773 425 GEEVI----AFVGDD-RHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 425 ~~~V~----a~s~d~-~~lasg-~D~~IklWDl 451 (453)
...+. .++|.. .+|+.| +|.-++|+|.
T Consensus 198 ~~lielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 198 PQLIELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred hhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 22133 456744 578888 9999999983
No 239
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.37 E-value=0.00016 Score=74.56 Aligned_cols=260 Identities=15% Similarity=0.085 Sum_probs=136.4
Q ss_pred EEEEEec--CCEEEEEe-CCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeec
Q 046773 147 CRCLTLS--DLYLACGF-ADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDD 221 (453)
Q Consensus 147 v~~lafs--~~~LaSGS-~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~ 221 (453)
..++++| +++|+.+. .++++.|+|.+|.+.++++.......-. ....+.+|..+ ....+..-.|.- +||-++.
T Consensus 80 ~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~-~~~Rv~aIv~s~~~~~fVv~lkd~~-~I~vVdy 157 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDG-PESRVAAIVASPGRPEFVVNLKDTG-EIWVVDY 157 (369)
T ss_dssp EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTT-S---EEEEEE-SSSSEEEEEETTTT-EEEEEET
T ss_pred cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccc-cCCCceeEEecCCCCEEEEEEccCC-eEEEEEe
Confidence 4567775 56777665 6899999999999999988532110000 11245666433 333454445533 7776653
Q ss_pred CCcceE---EeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEE---ecccccCCcceeeeeeeeeec-
Q 046773 222 VANETR---TAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVF---VGGDLTDHNTVMGWRMLTEFT- 294 (453)
Q Consensus 222 ~g~~~~---~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~---~g~~l~~~~~v~~w~~l~~h~- 294 (453)
.....+ ....+.... -..|+|+||++ |++...++.|-++|.++++.. ..+..+.+.....| -|.
T Consensus 158 ~d~~~~~~~~i~~g~~~~---D~~~dpdgry~--~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~----php~ 228 (369)
T PF02239_consen 158 SDPKNLKVTTIKVGRFPH---DGGFDPDGRYF--LVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF----PHPG 228 (369)
T ss_dssp TTSSCEEEEEEE--TTEE---EEEE-TTSSEE--EEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE----EETT
T ss_pred ccccccceeeeccccccc---ccccCccccee--eecccccceeEEEeeccceEEEEeeccccccccccccc----cCCC
Confidence 111222 222222221 25899999983 455566779999999998722 11111111111101 121
Q ss_pred -cceeEEEEcCCceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCC
Q 046773 295 -EFVGRVRVTSHESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTF 373 (453)
Q Consensus 295 -~~v~~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg 373 (453)
+++....-.....+..-+.+.+.+||..+.+.+.+....+... -...+|++..+.....-+. +..++.|.|..+.
T Consensus 229 ~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~gl-Fi~thP~s~~vwvd~~~~~---~~~~v~viD~~tl 304 (369)
T PF02239_consen 229 FGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGL-FIKTHPDSRYVWVDTFLNP---DADTVQVIDKKTL 304 (369)
T ss_dssp TEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-S---SHT-EEEEECCGT
T ss_pred cceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcc-eeecCCCCccEEeeccCCC---CCceEEEEECcCc
Confidence 2333322122222233344567789999988877764444443 3455888888776522221 1238999999998
Q ss_pred eeEEEEEecCC-CeeEEEEeeCCCeEEEEe-C-C-eEEEEECCCCeEEEEec
Q 046773 374 EEVCRFSLRAD-RNVNVMGCMNQGYALMCV-E-G-VIRVWEVEGGEYMYSFR 421 (453)
Q Consensus 374 ~~v~~l~~~~~-~v~~~~~~~~~~~lls~s-~-~-tIrlWD~~tG~~l~tL~ 421 (453)
+.+.++...+. .+..+-|+++|+++..+. + + .|.|+|.+|.+.+..++
T Consensus 305 ~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 305 KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred ceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 77666643332 356677888998876543 3 4 99999999999998875
No 240
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=1.9e-06 Score=89.25 Aligned_cols=261 Identities=12% Similarity=0.139 Sum_probs=133.3
Q ss_pred hhHHHHHHHhhhhhcccccCceeeEEeeCCCCCCCCCCeEEEEEE-ec-CCEEEEEeCCCcEEEEECC-------CCeEE
Q 046773 107 TWRDEYIYRHRTAQNFRTRRYTHFNLYFDPSDVDNPDGLTCRCLT-LS-DLYLACGFADGAVRLFDLT-------TRLHV 177 (453)
Q Consensus 107 ~Wk~~y~~~~~~~~nw~~g~~~~~~~~~~~~gh~~~d~v~v~~la-fs-~~~LaSGS~D~TIrlWD~~-------tg~~~ 177 (453)
-|+.+..++..-..|. +.++..+ ..+.||.+. |..++ .+ .+..+|+|.|+|||+|.+. |..|.
T Consensus 706 ~W~~ets~~e~dt~~l---n~~~irL-~nf~GH~~~----iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQ 777 (1034)
T KOG4190|consen 706 VWCAETSAAECDTDNL---NFDHIRL-CNFTGHQEK----IRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQ 777 (1034)
T ss_pred HHHhhhhHhhcCCccc---ccceeee-ecccCcHHH----hHHHHhcccccceeeccCCceEEEEEeccccCccccceee
Confidence 4666655554444332 2333322 123499843 55544 34 4688999999999999974 33466
Q ss_pred EEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEee
Q 046773 178 RTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGL 257 (453)
Q Consensus 178 ~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS 257 (453)
.|++.|.. .|..| .|-.|-|+ ..|
T Consensus 778 fTY~aHkk--------~i~~i-------------------------------------------gfL~~lr~-----i~S 801 (1034)
T KOG4190|consen 778 FTYQAHKK--------PIHDI-------------------------------------------GFLADLRS-----IAS 801 (1034)
T ss_pred eEhhhccC--------cccce-------------------------------------------eeeeccce-----eee
Confidence 66665543 12222 22222222 235
Q ss_pred CCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEE-Ec-CCcEEEEECCCCc--eEEEE---
Q 046773 258 AGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVA-CT-SSRVITFDLRNQG--MVLGE--- 330 (453)
Q Consensus 258 ~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~va-s~-d~tIrlWDl~t~~--~~~~~--- 330 (453)
.|+-|.+||.--|+.+.- .+.++. .+-...|.++---.+.++++ |+ ..|||+.|.+.++ |..+.
T Consensus 802 cD~giHlWDPFigr~Laq-~~dapk--------~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna 872 (1034)
T KOG4190|consen 802 CDGGIHLWDPFIGRLLAQ-MEDAPK--------EGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNA 872 (1034)
T ss_pred ccCcceeecccccchhHh-hhcCcc--------cCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccC
Confidence 667777777655552210 000000 00111222221111234444 33 4799999999875 32222
Q ss_pred eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEE-
Q 046773 331 RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRV- 408 (453)
Q Consensus 331 ~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrl- 408 (453)
.+...-....++.+.|++++.+=+.| .|-+-|..+|..+.....-.-....++ .|.+..++.+.. .++-+
T Consensus 873 ~~Pna~~R~iaVa~~GN~lAa~LSnG-------ci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVn 944 (1034)
T KOG4190|consen 873 PGPNALTRAIAVADKGNKLAAALSNG-------CIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVN 944 (1034)
T ss_pred CCCchheeEEEeccCcchhhHHhcCC-------cEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEee
Confidence 12222233455778899999888888 888888888865543211110011111 223334443333 78888
Q ss_pred EECCCCeEEEEecccCCceEEEEecCCCEEEEE-eCCcEEEE
Q 046773 409 WEVEGGEYMYSFRERIGEEVIAFVGDDRHVAAS-CGTNIHLW 449 (453)
Q Consensus 409 WD~~tG~~l~tL~gh~~~~V~a~s~d~~~lasg-~D~~IklW 449 (453)
|-.-.|...+++....+. ..-+..-|.-|+++ ..+.+.++
T Consensus 945 Whaldgimh~q~kpppep-ahflqsvgpSLV~a~~Gn~lgVY 985 (1034)
T KOG4190|consen 945 WHALDGIMHLQDKPPPEP-AHFLQSVGPSLVTAQNGNILGVY 985 (1034)
T ss_pred ehhcCCeeeeccCCCCcc-hhhhhccCceeEEeccCcEEEEE
Confidence 998888887777543333 22122233445555 33334443
No 241
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.36 E-value=6.2e-05 Score=73.89 Aligned_cols=153 Identities=10% Similarity=0.183 Sum_probs=100.7
Q ss_pred eeccceeEEEEcCCceEEEEcCCcEEEEECCCC-ceEEEEeeccCCeEEEEEEecCCEEEEEe---CCCccccCcceEEE
Q 046773 292 EFTEFVGRVRVTSHESAVACTSSRVITFDLRNQ-GMVLGERGYGRGLYVTSVDVNAEAYIVVE---NRELENQNRRLAIV 367 (453)
Q Consensus 292 ~h~~~v~~v~~s~~~~~vas~d~tIrlWDl~t~-~~~~~~~g~~~~~~v~~~~~~g~~l~s~s---~dg~~~~~~~~i~I 367 (453)
....+|.+|+++++.+++ --..+|.||.-.+. +.++.+.-.....-..++.+.-+.-+.+- --| .++|
T Consensus 92 ~f~~~I~~V~l~r~riVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~G-------qvQi 163 (346)
T KOG2111|consen 92 SFNSEIKAVKLRRDRIVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTG-------QVQI 163 (346)
T ss_pred EeccceeeEEEcCCeEEE-EecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccc-------eEEE
Confidence 345789999999976555 45678999988743 43443311110011344444433333331 123 6777
Q ss_pred EEcCCCee--EEEEEecCCCeeEEEEeeCCCeEEEEeC-C-eEEEEECCCCeEEEEecccCC-ceEE--EEecCCCEEEE
Q 046773 368 RRVDTFEE--VCRFSLRADRNVNVMGCMNQGYALMCVE-G-VIRVWEVEGGEYMYSFRERIG-EEVI--AFVGDDRHVAA 440 (453)
Q Consensus 368 w~~~tg~~--v~~l~~~~~~v~~~~~~~~~~~lls~s~-~-tIrlWD~~tG~~l~tL~gh~~-~~V~--a~s~d~~~las 440 (453)
-++..-+. -..+..|.+.+..++...+|..++++|. | -|||||.++|+.++.|+--.+ ..|. +|+||..+||.
T Consensus 164 ~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~Lav 243 (346)
T KOG2111|consen 164 VDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAV 243 (346)
T ss_pred EEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEE
Confidence 77654322 2456678887888888888888888887 5 569999999999999963222 1244 88999999998
Q ss_pred E-eCCcEEEEecC
Q 046773 441 S-CGTNIHLWDFG 452 (453)
Q Consensus 441 g-~D~~IklWDl~ 452 (453)
+ .-|||+|+.+.
T Consensus 244 sSdKgTlHiF~l~ 256 (346)
T KOG2111|consen 244 SSDKGTLHIFSLR 256 (346)
T ss_pred EcCCCeEEEEEee
Confidence 8 67999998763
No 242
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.33 E-value=0.00085 Score=63.61 Aligned_cols=173 Identities=14% Similarity=0.151 Sum_probs=111.3
Q ss_pred EEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeee-eeeeccceeEEEEcCCceEEEEcCCcEEEEECCCCceEEE-E
Q 046773 253 LYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRM-LTEFTEFVGRVRVTSHESAVACTSSRVITFDLRNQGMVLG-E 330 (453)
Q Consensus 253 LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~-l~~h~~~v~~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~-~ 330 (453)
|++++.++.|..||..||+.+ |.. +.+-... ......+.+++++.++.|..+|+++|+.+.+ .
T Consensus 39 v~~~~~~~~l~~~d~~tG~~~-------------W~~~~~~~~~~--~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~ 103 (238)
T PF13360_consen 39 VYVASGDGNLYALDAKTGKVL-------------WRFDLPGPISG--APVVDGGRVYVGTSDGSLYALDAKTGKVLWSIY 103 (238)
T ss_dssp EEEEETTSEEEEEETTTSEEE-------------EEEECSSCGGS--GEEEETTEEEEEETTSEEEEEETTTSCEEEEEE
T ss_pred EEEEcCCCEEEEEECCCCCEE-------------EEeeccccccc--eeeecccccccccceeeeEecccCCcceeeeec
Confidence 566689999999999999943 111 1110000 1233455677778788999999999987766 2
Q ss_pred eec--cC-CeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCe----------eEEEEeeCCCe
Q 046773 331 RGY--GR-GLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRN----------VNVMGCMNQGY 397 (453)
Q Consensus 331 ~g~--~~-~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v----------~~~~~~~~~~~ 397 (453)
... .. ........+.++.++.+..++ .+...|..+|+.+-......... ..-... .++.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 175 (238)
T PF13360_consen 104 LTSSPPAGVRSSSSPAVDGDRLYVGTSSG-------KLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVI-SDGR 175 (238)
T ss_dssp E-SSCTCSTB--SEEEEETTEEEEEETCS-------EEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEEC-CTTE
T ss_pred cccccccccccccCceEecCEEEEEeccC-------cEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEE-ECCE
Confidence 221 11 112334556688888888888 89999999999888776643211 111111 2346
Q ss_pred EEEEeC-C-eEEEEECCCCeEEEEecccCCceEEE-EecCCCEEEEE-eCCcEEEEecC
Q 046773 398 ALMCVE-G-VIRVWEVEGGEYMYSFRERIGEEVIA-FVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 398 lls~s~-~-tIrlWD~~tG~~l~tL~gh~~~~V~a-~s~d~~~lasg-~D~~IklWDl~ 452 (453)
+..++. + .+.+ |+++|+.+.... ... +.. +.+++..|... .|+.|..||+.
T Consensus 176 v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~-~~~~~~~~~~~l~~~~~~~~l~~~d~~ 230 (238)
T PF13360_consen 176 VYVSSGDGRVVAV-DLATGEKLWSKP--ISG-IYSLPSVDGGTLYVTSSDGRLYALDLK 230 (238)
T ss_dssp EEEECCTSSEEEE-ETTTTEEEEEEC--SS--ECECEECCCTEEEEEETTTEEEEEETT
T ss_pred EEEEcCCCeEEEE-ECCCCCEEEEec--CCC-ccCCceeeCCEEEEEeCCCEEEEEECC
Confidence 555654 4 6888 999999775433 233 343 67788888777 79999999974
No 243
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.32 E-value=0.0001 Score=77.13 Aligned_cols=260 Identities=15% Similarity=0.135 Sum_probs=146.3
Q ss_pred EEEEEec--CC-EEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcC--CeEEEEeCCCCEEEEEeec
Q 046773 147 CRCLTLS--DL-YLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITD--SQLIFATLDGDIHVAVIDD 221 (453)
Q Consensus 147 v~~lafs--~~-~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g--~~LasgS~D~tIkvWd~~~ 221 (453)
++.+..+ +. .||||-|--.||++|+..-.. .|.-|... .-|.=+-.++ .+++.--.|++|.+=.-
T Consensus 54 st~ik~s~DGqY~lAtG~YKP~ikvydlanLSL--KFERhlDa------e~V~feiLsDD~SK~v~L~~DR~IefHak-- 123 (703)
T KOG2321|consen 54 STRIKVSPDGQYLLATGTYKPQIKVYDLANLSL--KFERHLDA------EVVDFEILSDDYSKSVFLQNDRTIEFHAK-- 123 (703)
T ss_pred cceeEecCCCcEEEEecccCCceEEEEccccee--eeeecccc------cceeEEEeccchhhheEeecCceeeehhh--
Confidence 3444444 44 589999999999999976653 23333321 1122112233 35666666777644211
Q ss_pred CCcc-eEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEE
Q 046773 222 VANE-TRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRV 300 (453)
Q Consensus 222 ~g~~-~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v 300 (453)
.|.+ ..+...-. .+...=-|+.| |+.++....|-=.|++.|+-+. .+.--.+.+|+|
T Consensus 124 ~G~hy~~RIP~~G--RDm~y~~~scD------ly~~gsg~evYRlNLEqGrfL~--------------P~~~~~~~lN~v 181 (703)
T KOG2321|consen 124 YGRHYRTRIPKFG--RDMKYHKPSCD------LYLVGSGSEVYRLNLEQGRFLN--------------PFETDSGELNVV 181 (703)
T ss_pred cCeeeeeecCcCC--ccccccCCCcc------EEEeecCcceEEEEcccccccc--------------ccccccccceee
Confidence 1211 11111000 00000012222 5555555667667898888431 122234678899
Q ss_pred EEcCCceEEEE-c-CCcEEEEECCCCceEEEE--e-------eccCCeEEEEEEecCCE--EEEEeCCCccccCcceEEE
Q 046773 301 RVTSHESAVAC-T-SSRVITFDLRNQGMVLGE--R-------GYGRGLYVTSVDVNAEA--YIVVENRELENQNRRLAIV 367 (453)
Q Consensus 301 ~~s~~~~~vas-~-d~tIrlWDl~t~~~~~~~--~-------g~~~~~~v~~~~~~g~~--l~s~s~dg~~~~~~~~i~I 367 (453)
.+++-.-++++ . ++.|-.||.++...+.++ . |......|+++.|+++. +++|++.| .+-|
T Consensus 182 ~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G-------~v~i 254 (703)
T KOG2321|consen 182 SINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG-------SVLI 254 (703)
T ss_pred eecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCC-------cEEE
Confidence 99875544443 3 689999999987544332 1 11122346777777654 57788999 8999
Q ss_pred EEcCCCeeEEEEEecCCC--eeEEEEeeC-CCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE
Q 046773 368 RRVDTFEEVCRFSLRADR--NVNVMGCMN-QGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS 441 (453)
Q Consensus 368 w~~~tg~~v~~l~~~~~~--v~~~~~~~~-~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg 441 (453)
+|+.+.+++..- -|... +..+.+-.. +.-.+.+.+ .++||||-.+|+....++- +.. ++ ++-|++-.+.++
T Consensus 255 yDLRa~~pl~~k-dh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp-t~~-lND~C~~p~sGm~f~A 331 (703)
T KOG2321|consen 255 YDLRASKPLLVK-DHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP-TSD-LNDFCFVPGSGMFFTA 331 (703)
T ss_pred EEcccCCceeec-ccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeeccc-cCC-cCceeeecCCceEEEe
Confidence 999887665332 22222 333333322 222334444 9999999999998877643 233 55 677888888778
Q ss_pred -eCCcEEE
Q 046773 442 -CGTNIHL 448 (453)
Q Consensus 442 -~D~~Ikl 448 (453)
.+..+..
T Consensus 332 ne~~~m~~ 339 (703)
T KOG2321|consen 332 NESSKMHT 339 (703)
T ss_pred cCCCccee
Confidence 5555443
No 244
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.32 E-value=3e-05 Score=76.79 Aligned_cols=249 Identities=9% Similarity=0.145 Sum_probs=138.8
Q ss_pred eEEEEEEc--CCeEEEEeCCCCEEEEEeecC--C----cceEEeeeccee-------cCce-EEEEeCCCceeeEEEEee
Q 046773 194 AVSGIIIT--DSQLIFATLDGDIHVAVIDDV--A----NETRTAHFGSVM-------DDGV-LIDFTGCSRYWVGLYAGL 257 (453)
Q Consensus 194 ~V~~i~f~--g~~LasgS~D~tIkvWd~~~~--g----~~~~~~~~~~v~-------~~~~-~v~Fs~dg~~~~~LaSgS 257 (453)
-+++|.|+ |..||+|..+|.+-+..-+.. + ....+.|...+. .+.+ .+...+++..-..|.| .
T Consensus 27 iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls-t 105 (433)
T KOG1354|consen 27 IISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS-T 105 (433)
T ss_pred ceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe-c
Confidence 35667664 899999999998877643221 1 122333433221 0111 2455555544333555 5
Q ss_pred CCCeEEEeeCCCCc-EEeccccc---CCcceeeee------------------eeeeeccceeEEEEcCCc-eEEEEcCC
Q 046773 258 AGRAFHIWDRQAEE-VFVGGDLT---DHNTVMGWR------------------MLTEFTEFVGRVRVTSHE-SAVACTSS 314 (453)
Q Consensus 258 ~D~tIrvWD~~tg~-~~~g~~l~---~~~~v~~w~------------------~l~~h~~~v~~v~~s~~~-~~vas~d~ 314 (453)
.|+|||+|-+.... ...|-.++ ++.++..++ ....|+-.+|++.++.+. ++++++|-
T Consensus 106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdL 185 (433)
T KOG1354|consen 106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDL 185 (433)
T ss_pred CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccce
Confidence 79999999886533 22111110 011111110 124678889999998665 56666677
Q ss_pred cEEEEECCCC-ceE-EEE-eeccC-----CeEEEEEEecC-CEEEEEeCCCccccCcceEEEEEcCCCe------eEEEE
Q 046773 315 RVITFDLRNQ-GMV-LGE-RGYGR-----GLYVTSVDVNA-EAYIVVENRELENQNRRLAIVRRVDTFE------EVCRF 379 (453)
Q Consensus 315 tIrlWDl~t~-~~~-~~~-~g~~~-----~~~v~~~~~~g-~~l~s~s~dg~~~~~~~~i~Iw~~~tg~------~v~~l 379 (453)
.|-||+++-- ++- +.. +.+.. -+....|+|.. +.++-.|+.| +||+-|+.... .+...
T Consensus 186 RINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKG-------tIrLcDmR~~aLCd~hsKlfEe 258 (433)
T KOG1354|consen 186 RINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKG-------TIRLCDMRQSALCDAHSKLFEE 258 (433)
T ss_pred eeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCC-------cEEEeechhhhhhcchhhhhcc
Confidence 8999999732 221 111 11100 00012244433 3455567778 99998876321 01111
Q ss_pred EecC----------CCeeEEEEeeCCCeEEEEeCCeEEEEEC-CCCeEEEEecccC------------CceEE-----EE
Q 046773 380 SLRA----------DRNVNVMGCMNQGYALMCVEGVIRVWEV-EGGEYMYSFRERI------------GEEVI-----AF 431 (453)
Q Consensus 380 ~~~~----------~~v~~~~~~~~~~~lls~s~~tIrlWD~-~tG~~l~tL~gh~------------~~~V~-----a~ 431 (453)
+..| ..+..+-|+.+|+|+++-.--||||||+ ...+.+.+.+-|. +. |. ++
T Consensus 259 pedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~-IfdKFec~~ 337 (433)
T KOG1354|consen 259 PEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDA-IFDKFECSW 337 (433)
T ss_pred ccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccc-hhheeEEEE
Confidence 1111 1133356777788877544499999999 4567777777663 22 32 56
Q ss_pred ecCCCEEEEE-eCCcEEEEec
Q 046773 432 VGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 432 s~d~~~lasg-~D~~IklWDl 451 (453)
+.++.++.+| +.+.++++++
T Consensus 338 sg~~~~v~TGsy~n~frvf~~ 358 (433)
T KOG1354|consen 338 SGNDSYVMTGSYNNVFRVFNL 358 (433)
T ss_pred cCCcceEecccccceEEEecC
Confidence 7788899999 8888888873
No 245
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.32 E-value=0.00066 Score=70.35 Aligned_cols=268 Identities=13% Similarity=0.088 Sum_probs=146.8
Q ss_pred EecCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCCcceEEee
Q 046773 151 TLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVANETRTAH 230 (453)
Q Consensus 151 afs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g~~~~~~~ 230 (453)
..+++.|..++.++.+.-+|.+||+.+.+..-.. . ...+....+.+++.++.++.+.-.|.++ | ..+..+
T Consensus 117 ~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~-------~~ssP~v~~~~v~v~~~~g~l~ald~~t-G-~~~W~~ 186 (394)
T PRK11138 117 TVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-E-------ALSRPVVSDGLVLVHTSNGMLQALNESD-G-AVKWTV 186 (394)
T ss_pred EEECCEEEEEcCCCEEEEEECCCCCCcccccCCC-c-------eecCCEEECCEEEEECCCCEEEEEEccC-C-CEeeee
Confidence 3455667778899999999999999887765321 1 1111223456677777888887777776 5 222211
Q ss_pred eccee----cCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeee-eccceeEEEEcCC
Q 046773 231 FGSVM----DDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTE-FTEFVGRVRVTSH 305 (453)
Q Consensus 231 ~~~v~----~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~-h~~~v~~v~~s~~ 305 (453)
..... .....-... ++. ++.++.++.+...|.++|+..--..+..+........+.. ...| .+.++
T Consensus 187 ~~~~~~~~~~~~~sP~v~-~~~----v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP----~v~~~ 257 (394)
T PRK11138 187 NLDVPSLTLRGESAPATA-FGG----AIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTP----VVVGG 257 (394)
T ss_pred cCCCCcccccCCCCCEEE-CCE----EEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCc----EEECC
Confidence 11000 000000111 121 4556778888889999988321000000000000000000 0112 12344
Q ss_pred ceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCC
Q 046773 306 ESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADR 385 (453)
Q Consensus 306 ~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~ 385 (453)
.+++++.++.+...|+++|+.+-.... .. ...+...++.+..++.++ .+...+..+|+.+-....-...
T Consensus 258 ~vy~~~~~g~l~ald~~tG~~~W~~~~-~~---~~~~~~~~~~vy~~~~~g-------~l~ald~~tG~~~W~~~~~~~~ 326 (394)
T PRK11138 258 VVYALAYNGNLVALDLRSGQIVWKREY-GS---VNDFAVDGGRIYLVDQND-------RVYALDTRGGVELWSQSDLLHR 326 (394)
T ss_pred EEEEEEcCCeEEEEECCCCCEEEeecC-CC---ccCcEEECCEEEEEcCCC-------eEEEEECCCCcEEEcccccCCC
Confidence 556667788999999999876544311 10 112344577777778888 7778888888765432211111
Q ss_pred e-eEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEEE--EecCCCEEEEEeCCcEEEEec
Q 046773 386 N-VNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVIA--FVGDDRHVAASCGTNIHLWDF 451 (453)
Q Consensus 386 v-~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~a--~s~d~~~lasg~D~~IklWDl 451 (453)
. .+.+ ..++++..++. +.|.+.|..+|+.+...+-.... +.+ +..+++.++...||.|...++
T Consensus 327 ~~~sp~--v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~-~~s~P~~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 327 LLTAPV--LYNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSG-FLSEPVVADDKLLIQARDGTVYAITR 393 (394)
T ss_pred cccCCE--EECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCc-ceeCCEEECCEEEEEeCCceEEEEeC
Confidence 1 1111 12566666665 99999999999998776533333 331 234665555459999887764
No 246
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.31 E-value=2.3e-06 Score=87.23 Aligned_cols=197 Identities=12% Similarity=0.133 Sum_probs=131.6
Q ss_pred EEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcE-Eecc---cc------cC---------------Ccceeeeeeeeeec
Q 046773 240 LIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEV-FVGG---DL------TD---------------HNTVMGWRMLTEFT 294 (453)
Q Consensus 240 ~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~-~~g~---~l------~~---------------~~~v~~w~~l~~h~ 294 (453)
.+.|+.+|+. |+-|+.-+-|-..|..|+++ +.-. ++ .. ++.-.-+|.|+.|
T Consensus 134 ~~~ytrnGrh---lllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~- 209 (545)
T KOG1272|consen 134 HLDYTRNGRH---LLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRH- 209 (545)
T ss_pred eeeecCCccE---EEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhc-
Confidence 3677777875 55566667788888888762 1110 00 00 0000113667666
Q ss_pred cceeEEEEcCCceEEEEc--CCcEEEEECCCCceEEEE-eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcC
Q 046773 295 EFVGRVRVTSHESAVACT--SSRVITFDLRNQGMVLGE-RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVD 371 (453)
Q Consensus 295 ~~v~~v~~s~~~~~vas~--d~tIrlWDl~t~~~~~~~-~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~ 371 (453)
..|+.+.|-|-..++++. .+-.+-=|+.+|+.+-.+ .+.+ ...|.+-.|-+..+-++-+.| ++.+|..+
T Consensus 210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G-~~~vm~qNP~NaVih~GhsnG-------tVSlWSP~ 281 (545)
T KOG1272|consen 210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAG-RTDVMKQNPYNAVIHLGHSNG-------TVSLWSPN 281 (545)
T ss_pred CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCC-ccchhhcCCccceEEEcCCCc-------eEEecCCC
Confidence 568888888877555443 366888899998754332 2211 233455556666667777888 99999999
Q ss_pred CCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEEEEecCC-CEEEEEeCCcEEEE
Q 046773 372 TFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVIAFVGDD-RHVAASCGTNIHLW 449 (453)
Q Consensus 372 tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~a~s~d~-~~lasg~D~~IklW 449 (453)
..+++..+..|...|.++++.++|.|+++++. +.|||||+..-..++++.-.+. ...++... -.||.+....|.||
T Consensus 282 skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~--a~~ls~SqkglLA~~~G~~v~iw 359 (545)
T KOG1272|consen 282 SKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHP--ASNLSLSQKGLLALSYGDHVQIW 359 (545)
T ss_pred CcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCC--ccccccccccceeeecCCeeeee
Confidence 88888888888889999999999999998776 9999999999888887754221 23333322 25666655578888
Q ss_pred e
Q 046773 450 D 450 (453)
Q Consensus 450 D 450 (453)
.
T Consensus 360 ~ 360 (545)
T KOG1272|consen 360 K 360 (545)
T ss_pred h
Confidence 3
No 247
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.30 E-value=0.00068 Score=78.83 Aligned_cols=241 Identities=12% Similarity=0.051 Sum_probs=130.2
Q ss_pred EEEEc---CCeEEEEeCCCCEEEEEeecCCcceEEeeecc-----------eecCceEEEEeCCCceeeEEEEeeCCCeE
Q 046773 197 GIIIT---DSQLIFATLDGDIHVAVIDDVANETRTAHFGS-----------VMDDGVLIDFTGCSRYWVGLYAGLAGRAF 262 (453)
Q Consensus 197 ~i~f~---g~~LasgS~D~tIkvWd~~~~g~~~~~~~~~~-----------v~~~~~~v~Fs~dg~~~~~LaSgS~D~tI 262 (453)
+++++ ++..++-+..+.|+++|.+. ......+-.+. ....-.-|+|++++..+ .++-...+.|
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~L--YVaDt~n~~I 648 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLL--YVADTENHAL 648 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEE--EEEeCCCceE
Confidence 46664 34566667778888888754 21111110000 00111348899987741 2333455789
Q ss_pred EEeeCCCCc--EEecccccCCcceee--eeeeeeeccceeEEEEcC-Cc-eEEEE-cCCcEEEEECCCCceEEEEeecc-
Q 046773 263 HIWDRQAEE--VFVGGDLTDHNTVMG--WRMLTEFTEFVGRVRVTS-HE-SAVAC-TSSRVITFDLRNQGMVLGERGYG- 334 (453)
Q Consensus 263 rvWD~~tg~--~~~g~~l~~~~~v~~--w~~l~~h~~~v~~v~~s~-~~-~~vas-~d~tIrlWDl~t~~~~~~~~g~~- 334 (453)
++.|..++. ++.|....+. ...+ -...... ..-..|+|++ ++ +.++. .+.+|++||+.++... ...+.+
T Consensus 649 r~id~~~~~V~tlag~G~~g~-~~~gg~~~~~~~l-n~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~ 725 (1057)
T PLN02919 649 REIDFVNETVRTLAGNGTKGS-DYQGGKKGTSQVL-NSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGY 725 (1057)
T ss_pred EEEecCCCEEEEEeccCcccC-CCCCChhhhHhhc-CCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCc
Confidence 999998887 3432100000 0000 0000001 1124688887 34 44554 3478999999886432 221111
Q ss_pred --------C------CeEEEEEEecCCEE-EEEeCCCccccCcceEEEEEcCCCeeEEEE-----------Eec-C----
Q 046773 335 --------R------GLYVTSVDVNAEAY-IVVENRELENQNRRLAIVRRVDTFEEVCRF-----------SLR-A---- 383 (453)
Q Consensus 335 --------~------~~~v~~~~~~g~~l-~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l-----------~~~-~---- 383 (453)
. .-.-.+++++++.+ ++-+.++ .|++||.+++...... .+. .
T Consensus 726 ~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~-------~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g 798 (1057)
T PLN02919 726 ERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESS-------SIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVG 798 (1057)
T ss_pred cccCCCCccccccccCccEEEEeCCCCEEEEEECCCC-------eEEEEECCCCcEEEEEecccccCcccccccCCCCch
Confidence 0 00014567777744 4444455 8999998876421110 000 0
Q ss_pred -----CCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEeccc--------------CCceEE--EEecCCCEEEEE
Q 046773 384 -----DRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRER--------------IGEEVI--AFVGDDRHVAAS 441 (453)
Q Consensus 384 -----~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh--------------~~~~V~--a~s~d~~~lasg 441 (453)
..-..+++++++...++-+. ++|++||..+++... +.|. ... .. ++++||+.+++-
T Consensus 799 ~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~t-iaG~G~~G~~dG~~~~a~l~~-P~GIavd~dG~lyVaD 876 (1057)
T PLN02919 799 SEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTT-LAGTGKAGFKDGKALKAQLSE-PAGLALGENGRLFVAD 876 (1057)
T ss_pred hhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEE-EeccCCcCCCCCcccccccCC-ceEEEEeCCCCEEEEE
Confidence 01235667777765555555 899999999887653 3221 011 12 678999988877
Q ss_pred -eCCcEEEEecC
Q 046773 442 -CGTNIHLWDFG 452 (453)
Q Consensus 442 -~D~~IklWDl~ 452 (453)
.+++|++||+.
T Consensus 877 t~Nn~Irvid~~ 888 (1057)
T PLN02919 877 TNNSLIRYLDLN 888 (1057)
T ss_pred CCCCEEEEEECC
Confidence 89999999974
No 248
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.28 E-value=3.3e-05 Score=76.89 Aligned_cols=110 Identities=10% Similarity=0.128 Sum_probs=73.4
Q ss_pred eeccceeEEEEcCCceEEE--E-cCCcEEEEECCCCceEEEE-eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEE
Q 046773 292 EFTEFVGRVRVTSHESAVA--C-TSSRVITFDLRNQGMVLGE-RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIV 367 (453)
Q Consensus 292 ~h~~~v~~v~~s~~~~~va--s-~d~tIrlWDl~t~~~~~~~-~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~I 367 (453)
+| .+|.+++..+++...+ | +|..|+|||+.++.++.-. .+ ..+....-++|+++.+..++-|+ +.++
T Consensus 194 gh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g-lgg~slLkwSPdgd~lfaAt~da-------vfrl 264 (445)
T KOG2139|consen 194 GH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKG-LGGFSLLKWSPDGDVLFAATCDA-------VFRL 264 (445)
T ss_pred CC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccC-CCceeeEEEcCCCCEEEEecccc-------eeee
Confidence 45 6788999988876554 3 2467999999998765322 22 22344677899999999999999 9999
Q ss_pred EEcCC-CeeEEEEEecCCCeeEEEEeeCCCeEEEEeCCeEEEEEC
Q 046773 368 RRVDT-FEEVCRFSLRADRNVNVMGCMNQGYALMCVEGVIRVWEV 411 (453)
Q Consensus 368 w~~~t-g~~v~~l~~~~~~v~~~~~~~~~~~lls~s~~tIrlWD~ 411 (453)
|..+. -.+.. ....+..+++...+|.|++++-+..+.=+|+.+
T Consensus 265 w~e~q~wt~er-w~lgsgrvqtacWspcGsfLLf~~sgsp~lysl 308 (445)
T KOG2139|consen 265 WQENQSWTKER-WILGSGRVQTACWSPCGSFLLFACSGSPRLYSL 308 (445)
T ss_pred ehhcccceecc-eeccCCceeeeeecCCCCEEEEEEcCCceEEEE
Confidence 95432 11111 122234688888999998887554433334433
No 249
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.23 E-value=5.2e-06 Score=88.72 Aligned_cols=265 Identities=15% Similarity=0.134 Sum_probs=149.8
Q ss_pred EEEEecCCEEEEEeCCCcEEEEECC-CCeEEEEecCCCCCccccccceEEEEEEc-----CCeEEEEeCCCCEEEEEeec
Q 046773 148 RCLTLSDLYLACGFADGAVRLFDLT-TRLHVRTFRPQHSDRLGQFSRAVSGIIIT-----DSQLIFATLDGDIHVAVIDD 221 (453)
Q Consensus 148 ~~lafs~~~LaSGS~D~TIrlWD~~-tg~~~~tl~gh~~~~~~~~s~~V~~i~f~-----g~~LasgS~D~tIkvWd~~~ 221 (453)
.++..+++-||.+|.-+..- =|+. .+...+-|. |...+ .|..++++ +.-+++.|.-++| +|++..
T Consensus 30 ~si~p~grdi~lAsr~gl~i-~dld~p~~ppr~l~--h~tpw-----~vad~qws~h~a~~~wiVsts~qkai-iwnlA~ 100 (1081)
T KOG0309|consen 30 VSINPSGRDIVLASRQGLYI-IDLDDPFTPPRWLH--HITPW-----QVADVQWSPHPAKPYWIVSTSNQKAI-IWNLAK 100 (1081)
T ss_pred eeeccccchhhhhhhcCeEE-EeccCCCCCceeee--ccCcc-----hhcceecccCCCCceeEEecCcchhh-hhhhhc
Confidence 34555567788888776553 3543 334444442 32211 23334443 2347776666664 888754
Q ss_pred CC----cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccce
Q 046773 222 VA----NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFV 297 (453)
Q Consensus 222 ~g----~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v 297 (453)
.. .-.+.+|+-.+. -+.|.|+-.- .||++|.|..|..||+++-.... +....|+ ..-
T Consensus 101 ss~~aIef~lhghsrait----d~n~~~q~pd--Vlatcsvdt~vh~wd~rSp~~p~-------ys~~~w~------s~a 161 (1081)
T KOG0309|consen 101 SSSNAIEFVLHGHSRAIT----DINFNPQHPD--VLATCSVDTYVHAWDMRSPHRPF-------YSTSSWR------SAA 161 (1081)
T ss_pred CCccceEEEEecCcccee----ccccCCCCCc--ceeeccccccceeeeccCCCcce-------eeeeccc------ccC
Confidence 22 123445544432 2567666543 59999999999999999876211 1122232 123
Q ss_pred eEEEEcC-CceEEEEc-CCcEEEEECCCCceEE-EEeeccCCeEEEEEEecC---CEEEEEeCCCccccCcceEEEEEcC
Q 046773 298 GRVRVTS-HESAVACT-SSRVITFDLRNQGMVL-GERGYGRGLYVTSVDVNA---EAYIVVENRELENQNRRLAIVRRVD 371 (453)
Q Consensus 298 ~~v~~s~-~~~~vas~-d~tIrlWDl~t~~~~~-~~~g~~~~~~v~~~~~~g---~~l~s~s~dg~~~~~~~~i~Iw~~~ 371 (453)
..|+.+- +.-+.+++ ...|++||++-|...+ .+++|. ..++.++|.. ..+.+.++|+ +++.|+-+
T Consensus 162 sqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~v--s~vn~~~fnr~~~s~~~s~~~d~-------tvkfw~y~ 232 (1081)
T KOG0309|consen 162 SQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHV--SSVNSIDFNRFKYSEIMSSSNDG-------TVKFWDYS 232 (1081)
T ss_pred ceeeecccCcchhhhccCCceEEEeccCCCcceEEecccc--eeeehHHHhhhhhhhhcccCCCC-------ceeeeccc
Confidence 4566652 23344544 4679999999886543 356553 3455555543 4567778888 99999876
Q ss_pred CC--eeEEEEE-ecCCCeeEEEEee----------CCCeEEEEeC--CeEEEEECCCC-eEEEEecccCCceEEEEe---
Q 046773 372 TF--EEVCRFS-LRADRNVNVMGCM----------NQGYALMCVE--GVIRVWEVEGG-EYMYSFRERIGEEVIAFV--- 432 (453)
Q Consensus 372 tg--~~v~~l~-~~~~~v~~~~~~~----------~~~~lls~s~--~tIrlWD~~tG-~~l~tL~gh~~~~V~a~s--- 432 (453)
.. +.-++++ -.|.+ ...+.| .|+.++---. +.-+.|++.++ +.+++|.||.+. |..|.
T Consensus 233 kSt~e~~~~vtt~~piw--~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~-V~eFlWR~ 309 (1081)
T KOG0309|consen 233 KSTTESKRTVTTNFPIW--RGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDV-VLEFLWRK 309 (1081)
T ss_pred ccccccceeccccCcce--eccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchH-HHHHhhhh
Confidence 32 2111111 11111 000111 1121111111 45578888886 789999999988 65331
Q ss_pred -------cCCC--EEEEE-eCCcEEEEecC
Q 046773 433 -------GDDR--HVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 433 -------~d~~--~lasg-~D~~IklWDl~ 452 (453)
-|.+ .|++= .|.++|+|-++
T Consensus 310 r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 310 RKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred cccccCCCCccceeEEEeecCCceEeeecc
Confidence 2333 68886 99999999875
No 250
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.23 E-value=3.4e-06 Score=87.38 Aligned_cols=89 Identities=13% Similarity=0.212 Sum_probs=65.3
Q ss_pred eEEEEEE--cCCeEEEEeCCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc
Q 046773 194 AVSGIII--TDSQLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE 271 (453)
Q Consensus 194 ~V~~i~f--~g~~LasgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~ 271 (453)
.+..++| ||+.||+-|.|+.+||.|.++. -+.+........-..|..||||++ +++|+.|--|.||.+..++
T Consensus 292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~---eLlg~mkSYFGGLLCvcWSPDGKy---IvtGGEDDLVtVwSf~erR 365 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQ---ELLGVMKSYFGGLLCVCWSPDGKY---IVTGGEDDLVTVWSFEERR 365 (636)
T ss_pred cccceeEcCCCceEEEEecCceEEEeeccHH---HHHHHHHhhccceEEEEEcCCccE---EEecCCcceEEEEEeccce
Confidence 4555666 4778999999999999998871 111110011111124899999998 7899999999999999988
Q ss_pred -EEecccccCCcceeeeeeeeeeccceeEEEEc
Q 046773 272 -VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVT 303 (453)
Q Consensus 272 -~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s 303 (453)
..+| ++|.+||+.|+|+
T Consensus 366 VVARG---------------qGHkSWVs~VaFD 383 (636)
T KOG2394|consen 366 VVARG---------------QGHKSWVSVVAFD 383 (636)
T ss_pred EEEec---------------cccccceeeEeec
Confidence 4444 3788999999998
No 251
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=3.1e-06 Score=87.70 Aligned_cols=182 Identities=10% Similarity=0.164 Sum_probs=118.8
Q ss_pred EEEeeCCCeEEEeeCCCCc-EEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEcCCcEEEEECCCCceEEE-E
Q 046773 253 LYAGLAGRAFHIWDRQAEE-VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSSRVITFDLRNQGMVLG-E 330 (453)
Q Consensus 253 LaSgS~D~tIrvWD~~tg~-~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~-~ 330 (453)
.+|+|.|+|||+|.++..- .. .+..+--|.+.|+.+|+.+.|-.+...++|.|+.|.+||.--+..+-+ +
T Consensus 750 FiSASkDKTVKLWSik~EgD~~--------~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giHlWDPFigr~Laq~~ 821 (1034)
T KOG4190|consen 750 FISASKDKTVKLWSIKPEGDEI--------GTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIHLWDPFIGRLLAQME 821 (1034)
T ss_pred eeeccCCceEEEEEeccccCcc--------ccceeeeEhhhccCcccceeeeeccceeeeccCcceeecccccchhHhhh
Confidence 5799999999999998632 10 011111356789999999988777767888899999999876654332 1
Q ss_pred --eeccCCeEEEEEEecCCEEEEE--eCCCccccCcceEEEEEcCCCeeEEEEEec----CCC-eeEEEEeeCCCeEEEE
Q 046773 331 --RGYGRGLYVTSVDVNAEAYIVV--ENRELENQNRRLAIVRRVDTFEEVCRFSLR----ADR-NVNVMGCMNQGYALMC 401 (453)
Q Consensus 331 --~g~~~~~~v~~~~~~g~~l~s~--s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~----~~~-v~~~~~~~~~~~lls~ 401 (453)
.-|+....|.++.--...++++ +... |+|+.|...++-++++... |+. ++.++..+.|..++++
T Consensus 822 dapk~~a~~~ikcl~nv~~~iliAgcsaeS-------TVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~ 894 (1034)
T KOG4190|consen 822 DAPKEGAGGNIKCLENVDRHILIAGCSAES-------TVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAA 894 (1034)
T ss_pred cCcccCCCceeEecccCcchheeeeccchh-------hheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHH
Confidence 2233344566664323334333 4555 9999999888766666543 322 5666666677776665
Q ss_pred eC-CeEEEEECCCCeEEEEecccCCceEEEEecCCCEEEEE-eCCcEEE-E
Q 046773 402 VE-GVIRVWEVEGGEYMYSFRERIGEEVIAFVGDDRHVAAS-CGTNIHL-W 449 (453)
Q Consensus 402 s~-~tIrlWD~~tG~~l~tL~gh~~~~V~a~s~d~~~lasg-~D~~Ikl-W 449 (453)
-+ |+|-+-|..+|+.+...+.-.-....-..|.++.|+++ .|.++-+ |
T Consensus 895 LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldHslaVnW 945 (1034)
T KOG4190|consen 895 LSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNW 945 (1034)
T ss_pred hcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccceeEeee
Confidence 55 99999999999987654321111011124777778777 7888777 6
No 252
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.19 E-value=3.9e-06 Score=56.97 Aligned_cols=36 Identities=25% Similarity=0.540 Sum_probs=33.2
Q ss_pred CeEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEe
Q 046773 414 GEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWD 450 (453)
Q Consensus 414 G~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWD 450 (453)
|+|+++|++|.+. |+ +++|+++.|+|+ .|++|+|||
T Consensus 1 g~~~~~~~~h~~~-i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSS-INSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSS-EEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCc-EEEEEEecccccceeeCCCCEEEEEC
Confidence 5899999999999 88 677999999999 999999998
No 253
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.18 E-value=0.00067 Score=71.35 Aligned_cols=227 Identities=9% Similarity=0.048 Sum_probs=118.2
Q ss_pred CcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCe--EEEEeC-CCC--EEEEEeecCC-cceEEeeecceecC
Q 046773 164 GAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQ--LIFATL-DGD--IHVAVIDDVA-NETRTAHFGSVMDD 237 (453)
Q Consensus 164 ~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~--LasgS~-D~t--IkvWd~~~~g-~~~~~~~~~~v~~~ 237 (453)
..|.+.|...+. .+.|......... ...++||+. ++.-|. ++. |.+.++++ | ...+....+.
T Consensus 165 ~~l~~~d~dG~~-~~~lt~~~~~~~s------P~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~-g~~~~lt~~~g~---- 232 (428)
T PRK01029 165 GELWSVDYDGQN-LRPLTQEHSLSIT------PTWMHIGSGFPYLYVSYKLGVPKIFLGSLEN-PAGKKILALQGN---- 232 (428)
T ss_pred ceEEEEcCCCCC-ceEcccCCCCccc------ceEccCCCceEEEEEEccCCCceEEEEECCC-CCceEeecCCCC----
Confidence 467777776654 3445432211111 124556665 333343 344 44445555 4 2222222221
Q ss_pred ceEEEEeCCCceeeEEEE--eeCCCeEEEeeCCCCcEEecccccCCcceeeeeeee-eeccceeEEEEcCCce--EEEEc
Q 046773 238 GVLIDFTGCSRYWVGLYA--GLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLT-EFTEFVGRVRVTSHES--AVACT 312 (453)
Q Consensus 238 ~~~v~Fs~dg~~~~~LaS--gS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~-~h~~~v~~v~~s~~~~--~vas~ 312 (453)
....+|||||+.++.... |..|-.+.+||+.++..-. + ..+. +.........++|++. +..+.
T Consensus 233 ~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~------~------~~lt~~~~~~~~~p~wSPDG~~Laf~s~ 300 (428)
T PRK01029 233 QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGK------P------RRLLNEAFGTQGNPSFSPDGTRLVFVSN 300 (428)
T ss_pred ccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCc------c------eEeecCCCCCcCCeEECCCCCEEEEEEC
Confidence 113689999997432221 2234456668887642000 0 0111 1112234568898874 33343
Q ss_pred -CCcEEEE--ECCC-CceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeE
Q 046773 313 -SSRVITF--DLRN-QGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVN 388 (453)
Q Consensus 313 -d~tIrlW--Dl~t-~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~ 388 (453)
++..+|| ++.. ++....+..+........++|+|+.++..+.+. ....+.+||+++++.. .++..+..+..
T Consensus 301 ~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~----g~~~I~v~dl~~g~~~-~Lt~~~~~~~~ 375 (428)
T PRK01029 301 KDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIK----GVRQICVYDLATGRDY-QLTTSPENKES 375 (428)
T ss_pred CCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCC----CCcEEEEEECCCCCeE-EccCCCCCccc
Confidence 3555555 4432 222233322222333467899999888766543 1236888999888653 34333333566
Q ss_pred EEEeeCCCeEEEEeC----CeEEEEECCCCeEEEE
Q 046773 389 VMGCMNQGYALMCVE----GVIRVWEVEGGEYMYS 419 (453)
Q Consensus 389 ~~~~~~~~~lls~s~----~tIrlWD~~tG~~l~t 419 (453)
..+++|+++++..+. ..|.+||+.+++....
T Consensus 376 p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~L 410 (428)
T PRK01029 376 PSWAIDSLHLVYSAGNSNESELYLISLITKKTRKI 410 (428)
T ss_pred eEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence 788899988875432 6899999998875443
No 254
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=0.00016 Score=72.74 Aligned_cols=181 Identities=10% Similarity=0.120 Sum_probs=122.1
Q ss_pred EEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCC-ceEEE-Ec-C--CcEEEEECCCCceE
Q 046773 253 LYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSH-ESAVA-CT-S--SRVITFDLRNQGMV 327 (453)
Q Consensus 253 LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~-~~~va-s~-d--~tIrlWDl~t~~~~ 327 (453)
|.++-.++.+.+|..+.+.+.. ... .-+..+ ..+..|+-++. ..+++ ++ . ..+++||+++.+.+
T Consensus 118 Litc~~sG~l~~~~~k~~d~hs--------s~l--~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qi 186 (412)
T KOG3881|consen 118 LITCVSSGNLQVRHDKSGDLHS--------SKL--IKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQI 186 (412)
T ss_pred EEEEecCCcEEEEeccCCcccc--------ccc--eeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceee
Confidence 5677788999999998654210 000 001111 23344444432 23454 33 2 46899999987544
Q ss_pred EEEee-cc--C--CeE--EEE--EEec--CCEEEEEeCCCccccCcceEEEEEcCCC-eeEEEEEecCCCeeEEEEeeCC
Q 046773 328 LGERG-YG--R--GLY--VTS--VDVN--AEAYIVVENRELENQNRRLAIVRRVDTF-EEVCRFSLRADRNVNVMGCMNQ 395 (453)
Q Consensus 328 ~~~~g-~~--~--~~~--v~~--~~~~--g~~l~s~s~dg~~~~~~~~i~Iw~~~tg-~~v~~l~~~~~~v~~~~~~~~~ 395 (453)
....- .. - .++ ... |-+. ...+++++.-+ .+|++|..++ .++..|.+..+.+.++.-.|.+
T Consensus 187 w~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~h-------qvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~g 259 (412)
T KOG3881|consen 187 WSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYH-------QVRLYDTRHQRRPVAQFDFLENPISSTGLTPSG 259 (412)
T ss_pred eeccCCCCccccceeeeeeccceecCCCCCceEEEEecce-------eEEEecCcccCcceeEeccccCcceeeeecCCC
Confidence 33210 00 0 111 222 2222 45789999888 8999999875 5788888888888888888888
Q ss_pred CeEEEEeC-CeEEEEECCCCeEEEE-ecccCCceEEEEe--cCCCEEEEE-eCCcEEEEecC
Q 046773 396 GYALMCVE-GVIRVWEVEGGEYMYS-FRERIGEEVIAFV--GDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 396 ~~lls~s~-~tIrlWD~~tG~~l~t-L~gh~~~~V~a~s--~d~~~lasg-~D~~IklWDl~ 452 (453)
.+++++.. +.+...|+.+++.+.. |.|-+|. +.++. |..+.|||+ -|.-|||.|+.
T Consensus 260 n~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGs-irsih~hp~~~~las~GLDRyvRIhD~k 320 (412)
T KOG3881|consen 260 NFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGS-IRSIHCHPTHPVLASCGLDRYVRIHDIK 320 (412)
T ss_pred cEEEEecccchhheecccCceeeccccCCccCC-cceEEEcCCCceEEeeccceeEEEeecc
Confidence 88877777 9999999999998876 7888888 88654 666799998 99999999975
No 255
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.07 E-value=0.00047 Score=68.51 Aligned_cols=244 Identities=13% Similarity=0.172 Sum_probs=134.7
Q ss_pred EEEEEec--CCEEEEEeCCCcEEEEECCCCe-----EEEEecCCCCCcccccc-----ceEEEEEE-c-C--CeEEEEeC
Q 046773 147 CRCLTLS--DLYLACGFADGAVRLFDLTTRL-----HVRTFRPQHSDRLGQFS-----RAVSGIII-T-D--SQLIFATL 210 (453)
Q Consensus 147 v~~lafs--~~~LaSGS~D~TIrlWD~~tg~-----~~~tl~gh~~~~~~~~s-----~~V~~i~f-~-g--~~LasgS~ 210 (453)
+.|+.|+ |++||||-.+|.|-++.-+.-. -..+++.|..+ |.-.. ..|..|.. + + ........
T Consensus 28 is~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepE-FDYLkSleieEKinkIrw~~~~n~a~FLlstN 106 (433)
T KOG1354|consen 28 ISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPE-FDYLKSLEIEEKINKIRWLDDGNLAEFLLSTN 106 (433)
T ss_pred eeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcc-cchhhhhhhhhhhhhceecCCCCccEEEEecC
Confidence 7899996 6899999999999998753322 23345554321 11100 11222332 1 1 22333468
Q ss_pred CCCEEEEEeecCC----------------cceEEe---------------------eecceecCceEEEEeCCCceeeEE
Q 046773 211 DGDIHVAVIDDVA----------------NETRTA---------------------HFGSVMDDGVLIDFTGCSRYWVGL 253 (453)
Q Consensus 211 D~tIkvWd~~~~g----------------~~~~~~---------------------~~~~v~~~~~~v~Fs~dg~~~~~L 253 (453)
|+|||+|-+...+ +..++. |+-++. ++.++.|.+. +
T Consensus 107 dktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiN----SIS~NsD~Et---~ 179 (433)
T KOG1354|consen 107 DKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHIN----SISVNSDKET---F 179 (433)
T ss_pred CcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEee----eeeecCccce---E
Confidence 9999999875311 112221 111221 4788888886 3
Q ss_pred EEeeCCCeEEEeeCCC-CcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc---eEEEEcCCcEEEEECCCCceEEE
Q 046773 254 YAGLAGRAFHIWDRQA-EEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE---SAVACTSSRVITFDLRNQGMVLG 329 (453)
Q Consensus 254 aSgS~D~tIrvWD~~t-g~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~---~~vas~d~tIrlWDl~t~~~~~~ 329 (453)
.| +.|=.|.||+++- .+.|.--.+- | +.+...+.-+++..|+|.. .+-+|+.|+|||=|++....+-.
T Consensus 180 lS-ADdLRINLWnlei~d~sFnIVDIK-P------~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~ 251 (433)
T KOG1354|consen 180 LS-ADDLRINLWNLEIIDQSFNIVDIK-P------ANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDA 251 (433)
T ss_pred ee-ccceeeeeccccccCCceeEEEcc-c------cCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcc
Confidence 44 5678899999884 3344210000 1 1233455667777888754 34456679999999995432211
Q ss_pred ----EeeccC------------CeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcC-CCeeEEEEEecCC--------
Q 046773 330 ----ERGYGR------------GLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVD-TFEEVCRFSLRAD-------- 384 (453)
Q Consensus 330 ----~~g~~~------------~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~-tg~~v~~l~~~~~-------- 384 (453)
+..... .+.-..|+.+|+.++ +.|- .+++|||++ ..+++.+.+.|..
T Consensus 252 hsKlfEepedp~~rsffseiIsSISDvKFs~sGryil--sRDy------ltvk~wD~nme~~pv~t~~vh~~lr~kLc~l 323 (433)
T KOG1354|consen 252 HSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYIL--SRDY------LTVKLWDLNMEAKPVETYPVHEYLRSKLCSL 323 (433)
T ss_pred hhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEE--Eecc------ceeEEEeccccCCcceEEeehHhHHHHHHHH
Confidence 111111 111123455555544 3442 189999995 3456666666541
Q ss_pred ----Cee---EEEEeeCCCeEEEEeC-CeEEEEECCCC
Q 046773 385 ----RNV---NVMGCMNQGYALMCVE-GVIRVWEVEGG 414 (453)
Q Consensus 385 ----~v~---~~~~~~~~~~lls~s~-~tIrlWD~~tG 414 (453)
.+. ...++-++.++++++- +.+|+.++..|
T Consensus 324 YEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 324 YENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred hhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 121 2233335556666665 88999997765
No 256
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.06 E-value=0.00021 Score=71.37 Aligned_cols=162 Identities=11% Similarity=0.039 Sum_probs=104.1
Q ss_pred EEEeeCCCeEEEeeCCCCc--EEecccccCCcceeeeeeeeeeccceeEEEEcCC---ceEEEEcCCcEEEEECCCCc--
Q 046773 253 LYAGLAGRAFHIWDRQAEE--VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSH---ESAVACTSSRVITFDLRNQG-- 325 (453)
Q Consensus 253 LaSgS~D~tIrvWD~~tg~--~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~---~~~vas~d~tIrlWDl~t~~-- 325 (453)
+|++..|-+|||+|-.+.+ .++ .+ .--.|.++++.|- .++++|. ..|.+|-.....
T Consensus 113 fava~nddvVriy~ksst~pt~Lk-----s~-----------sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~ 175 (445)
T KOG2139|consen 113 FAVATNDDVVRIYDKSSTCPTKLK-----SV-----------SQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNA 175 (445)
T ss_pred hhhhccCcEEEEeccCCCCCceec-----ch-----------hhcceeEEEeccCCcceeeeeec-ceeEEEEcCccccc
Confidence 6788899999999988744 221 00 0134778888753 3566654 468999765321
Q ss_pred -e---------EEEEeeccCCeEEEEEE--ecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEee
Q 046773 326 -M---------VLGERGYGRGLYVTSVD--VNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCM 393 (453)
Q Consensus 326 -~---------~~~~~g~~~~~~v~~~~--~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~ 393 (453)
. ...+.+.+| ++|.++. +||..++++|.+. ..|+|||.++++++-.......++.-+-++|
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gs------ssi~iWdpdtg~~~pL~~~glgg~slLkwSP 248 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGS------SSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP 248 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCc------ceEEEEcCCCCCcccccccCCCceeeEEEcC
Confidence 0 001122222 6777764 6677888877554 3899999999987655545566677788999
Q ss_pred CCCeEEEEeC-CeEEEEEC-CCCeEEEEecccCCceEE--EEecCCCEEEE
Q 046773 394 NQGYALMCVE-GVIRVWEV-EGGEYMYSFRERIGEEVI--AFVGDDRHVAA 440 (453)
Q Consensus 394 ~~~~lls~s~-~tIrlWD~-~tG~~l~tL~gh~~~~V~--a~s~d~~~las 440 (453)
|+.++.++.- ++.+||+. .+-.+.+-.-| .+. |. ..+|+|++|.-
T Consensus 249 dgd~lfaAt~davfrlw~e~q~wt~erw~lg-sgr-vqtacWspcGsfLLf 297 (445)
T KOG2139|consen 249 DGDVLFAATCDAVFRLWQENQSWTKERWILG-SGR-VQTACWSPCGSFLLF 297 (445)
T ss_pred CCCEEEEecccceeeeehhcccceecceecc-CCc-eeeeeecCCCCEEEE
Confidence 9999887665 99999944 34333332222 234 55 56899987643
No 257
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.05 E-value=0.00033 Score=73.01 Aligned_cols=161 Identities=13% Similarity=0.138 Sum_probs=95.3
Q ss_pred cCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCC-EEEEEeecCCcceEEe
Q 046773 153 SDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGD-IHVAVIDDVANETRTA 229 (453)
Q Consensus 153 s~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~t-IkvWd~~~~g~~~~~~ 229 (453)
+|.-|+|.+.||-||+|.- +|-..-|+.- . -.+|.+++++ ...++++-.+.- ||---.+. .+-..+.
T Consensus 115 dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q-~-------~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~-k~i~WkA 184 (737)
T KOG1524|consen 115 DGAGLLTAGEDGVIKIWSR-SGMLRSTVVQ-N-------EESIRCARWAPNSNSIVFCQGGHISIKPLAANS-KIIRWRA 184 (737)
T ss_pred CCceeeeecCCceEEEEec-cchHHHHHhh-c-------CceeEEEEECCCCCceEEecCCeEEEeeccccc-ceeEEec
Confidence 3467999999999999985 5654444431 1 1267777765 344555433322 22111111 0111223
Q ss_pred eecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEE
Q 046773 230 HFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAV 309 (453)
Q Consensus 230 ~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~v 309 (453)
|.|-+. .++.+|.+.. ++||+.|-..||||.....+|. ...|.-++.+|+|.|+.++.
T Consensus 185 HDGiiL----~~~W~~~s~l---I~sgGED~kfKvWD~~G~~Lf~---------------S~~~ey~ITSva~npd~~~~ 242 (737)
T KOG1524|consen 185 HDGLVL----SLSWSTQSNI---IASGGEDFRFKIWDAQGANLFT---------------SAAEEYAITSVAFNPEKDYL 242 (737)
T ss_pred cCcEEE----EeecCccccc---eeecCCceeEEeecccCccccc---------------CChhccceeeeeecccccee
Confidence 444332 3678888775 7899999999999975544553 23456789999999998777
Q ss_pred EEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCC
Q 046773 310 ACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRE 356 (453)
Q Consensus 310 as~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg 356 (453)
..+-.+.|+=-+++|. +.-.+.++||..++.+.+.|
T Consensus 243 v~S~nt~R~~~p~~GS-----------ifnlsWS~DGTQ~a~gt~~G 278 (737)
T KOG1524|consen 243 LWSYNTARFSSPRVGS-----------IFNLSWSADGTQATCGTSTG 278 (737)
T ss_pred eeeeeeeeecCCCccc-----------eEEEEEcCCCceeeccccCc
Confidence 6666677743333321 22244555665555555544
No 258
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.01 E-value=0.0051 Score=64.56 Aligned_cols=178 Identities=6% Similarity=-0.011 Sum_probs=102.0
Q ss_pred EEEEeCCCceeeEEEEee-CCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEEEc-C--
Q 046773 240 LIDFTGCSRYWVGLYAGL-AGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVACT-S-- 313 (453)
Q Consensus 240 ~v~Fs~dg~~~~~LaSgS-~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~vas~-d-- 313 (453)
.-.|+|||+....+.+-. .+..|.++|+.+|+... +....+.+....++|++. +...+ +
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~---------------lt~~~g~~~~~~~SPDG~~la~~~~~~g~ 256 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK---------------IASSQGMLVVSDVSKDGSKLLLTMAPKGQ 256 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE---------------EecCCCcEEeeEECCCCCEEEEEEccCCC
Confidence 368999998632222322 24678899999988211 111223344456888763 33222 2
Q ss_pred CcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEee
Q 046773 314 SRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCM 393 (453)
Q Consensus 314 ~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~ 393 (453)
..|-+.|+.++.. .++..+........++|+|+.++-.|... ....|-+.++++++.. .++..+.. ...++|
T Consensus 257 ~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~----g~~~Iy~~dl~~g~~~-rlt~~g~~--~~~~SP 328 (419)
T PRK04043 257 PDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRL----GYPNIFMKKLNSGSVE-QVVFHGKN--NSSVST 328 (419)
T ss_pred cEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCC----CCceEEEEECCCCCeE-eCccCCCc--CceECC
Confidence 4588889988753 33321111122356999999887776543 1125666677776542 33333222 247889
Q ss_pred CCCeEEEEeC----------CeEEEEECCCCeEEEEecccCCceEEEEecCCCEEEEE
Q 046773 394 NQGYALMCVE----------GVIRVWEVEGGEYMYSFRERIGEEVIAFVGDDRHVAAS 441 (453)
Q Consensus 394 ~~~~lls~s~----------~tIrlWD~~tG~~l~tL~gh~~~~V~a~s~d~~~lasg 441 (453)
++++++..+. ..|.+-|+++|+. +.|.......--+|+|||+.|+-.
T Consensus 329 DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~~~~~~p~~SPDG~~I~f~ 385 (419)
T PRK04043 329 YKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTANGVNQFPRFSSDGGSIMFI 385 (419)
T ss_pred CCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCCCCcCCeEECCCCCEEEEE
Confidence 9998876542 2577779988864 444332111012789999987643
No 259
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.01 E-value=0.00042 Score=68.26 Aligned_cols=193 Identities=11% Similarity=0.142 Sum_probs=128.9
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCe---EEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEe
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRL---HVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVI 219 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~---~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~ 219 (453)
|+|-+|+. ..+|.+-..+.|.|+.....+ ..+||.-|.. .|.+|... ..+|+++|.|+-..||..
T Consensus 13 itchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~--------~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 13 ITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDK--------IVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred eeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCc--------ceeEEeecCCCCceeEccCCCCcccccc
Confidence 78999986 479999889999999987775 5778876654 57777765 568999999999999987
Q ss_pred ecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeee----eeeeee
Q 046773 220 DDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGW----RMLTEF 293 (453)
Q Consensus 220 ~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w----~~l~~h 293 (453)
...| ..++-.. .++.....|..+|.+.. +|.||..+.|.||=++... .| |+=+-+
T Consensus 85 ~~~~~WkptlvLl--RiNrAAt~V~WsP~enk---FAVgSgar~isVcy~E~EN--------------dWWVsKhikkPi 145 (361)
T KOG1523|consen 85 PSGGTWKPTLVLL--RINRAATCVKWSPKENK---FAVGSGARLISVCYYEQEN--------------DWWVSKHIKKPI 145 (361)
T ss_pred CCCCeeccceeEE--EeccceeeEeecCcCce---EEeccCccEEEEEEEeccc--------------ceehhhhhCCcc
Confidence 3313 2222111 11111224889999875 7899999999999887654 12 111233
Q ss_pred ccceeEEEEcCCceEEE--EcCCcEEEEE-----CCCC------------ceEEEE-eeccCCeEEEEEEecCCEEEEEe
Q 046773 294 TEFVGRVRVTSHESAVA--CTSSRVITFD-----LRNQ------------GMVLGE-RGYGRGLYVTSVDVNAEAYIVVE 353 (453)
Q Consensus 294 ~~~v~~v~~s~~~~~va--s~d~tIrlWD-----l~t~------------~~~~~~-~g~~~~~~v~~~~~~g~~l~s~s 353 (453)
.+.|.++..+|+..+++ |.|+.+|++. ++.. +++..+ ..++..+.-..|+++|+.|+=++
T Consensus 146 rStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~ 225 (361)
T KOG1523|consen 146 RSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVG 225 (361)
T ss_pred ccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEec
Confidence 46688888888775444 6677788763 2211 122222 12333333456788899998888
Q ss_pred CCCccccCcceEEEEEcCCC
Q 046773 354 NRELENQNRRLAIVRRVDTF 373 (453)
Q Consensus 354 ~dg~~~~~~~~i~Iw~~~tg 373 (453)
-|. ++.+=|...+
T Consensus 226 Hds-------~v~~~da~~p 238 (361)
T KOG1523|consen 226 HDS-------TVSFVDAAGP 238 (361)
T ss_pred CCC-------ceEEeecCCC
Confidence 888 7777776554
No 260
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.99 E-value=0.0064 Score=62.99 Aligned_cols=240 Identities=11% Similarity=0.095 Sum_probs=131.3
Q ss_pred EecCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCC-ccccc-c-ceEEEEEEcCCeEEEEeCCCCEEEEEeecCCcceE
Q 046773 151 TLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSD-RLGQF-S-RAVSGIIITDSQLIFATLDGDIHVAVIDDVANETR 227 (453)
Q Consensus 151 afs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~-~~~~~-s-~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g~~~~ 227 (453)
.+.++.|..++.++.+.-.|++||+.+....-.... .++.. . ....++..++.+++.++.++.+.-.|.++ | ..+
T Consensus 66 vv~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~t-G-~~~ 143 (394)
T PRK11138 66 AVAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAED-G-EVA 143 (394)
T ss_pred EEECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCC-C-CCc
Confidence 345677778888899999999999988776421110 00000 0 00122456677888888899998888877 5 111
Q ss_pred Eee--ecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCC
Q 046773 228 TAH--FGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSH 305 (453)
Q Consensus 228 ~~~--~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~ 305 (453)
... .+.+.... .+ . +++ |+.++.|+.|.-.|.+||+.+--.....+. ..+.+...++ +..+
T Consensus 144 W~~~~~~~~~ssP-~v--~-~~~----v~v~~~~g~l~ald~~tG~~~W~~~~~~~~-----~~~~~~~sP~----v~~~ 206 (394)
T PRK11138 144 WQTKVAGEALSRP-VV--S-DGL----VLVHTSNGMLQALNESDGAVKWTVNLDVPS-----LTLRGESAPA----TAFG 206 (394)
T ss_pred ccccCCCceecCC-EE--E-CCE----EEEECCCCEEEEEEccCCCEeeeecCCCCc-----ccccCCCCCE----EECC
Confidence 111 11111100 11 1 222 455677889999999999954211110000 0011111221 2234
Q ss_pred ceEEEEcCCcEEEEECCCCceEEEEe-eccCC-eE-------EEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeE
Q 046773 306 ESAVACTSSRVITFDLRNQGMVLGER-GYGRG-LY-------VTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEV 376 (453)
Q Consensus 306 ~~~vas~d~tIrlWDl~t~~~~~~~~-g~~~~-~~-------v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v 376 (453)
..++++.++.+...|+++|+.+-... ..... .. ..+-...++.+..++.++ .+.-.|..+|+.+
T Consensus 207 ~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g-------~l~ald~~tG~~~ 279 (394)
T PRK11138 207 GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNG-------NLVALDLRSGQIV 279 (394)
T ss_pred EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCC-------eEEEEECCCCCEE
Confidence 56666777888888999886543321 10000 00 011112356666677777 7777788888766
Q ss_pred EEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEe
Q 046773 377 CRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSF 420 (453)
Q Consensus 377 ~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL 420 (453)
-...... ...+ ...++.+..++. +.|...|.++|+.+-..
T Consensus 280 W~~~~~~--~~~~--~~~~~~vy~~~~~g~l~ald~~tG~~~W~~ 320 (394)
T PRK11138 280 WKREYGS--VNDF--AVDGGRIYLVDQNDRVYALDTRGGVELWSQ 320 (394)
T ss_pred EeecCCC--ccCc--EEECCEEEEEcCCCeEEEEECCCCcEEEcc
Confidence 5543221 1111 124556666655 89999999999876543
No 261
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.97 E-value=9.5e-05 Score=74.48 Aligned_cols=100 Identities=11% Similarity=0.109 Sum_probs=66.4
Q ss_pred CCCCEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeee
Q 046773 210 LDGDIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWR 288 (453)
Q Consensus 210 ~D~tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~ 288 (453)
.+..+.+|.+.. + ..+.-+|..-+. .|+++||+++ +.++..|.-|||=.... ++..++
T Consensus 130 D~~~~di~s~~~-~~~~~~lGhvSml~----dVavS~D~~~---IitaDRDEkIRvs~ypa--~f~Ies----------- 188 (390)
T KOG3914|consen 130 DVYSFDILSADS-GRCEPILGHVSMLL----DVAVSPDDQF---IITADRDEKIRVSRYPA--TFVIES----------- 188 (390)
T ss_pred Cceeeeeecccc-cCcchhhhhhhhhh----eeeecCCCCE---EEEecCCceEEEEecCc--ccchhh-----------
Confidence 334455666553 2 233334533222 3899999997 67888999998855432 111110
Q ss_pred eeeeeccceeEEEEcCCc-eEEEEcCCcEEEEECCCCceEEEE
Q 046773 289 MLTEFTEFVGRVRVTSHE-SAVACTSSRVITFDLRNQGMVLGE 330 (453)
Q Consensus 289 ~l~~h~~~v~~v~~s~~~-~~vas~d~tIrlWDl~t~~~~~~~ 330 (453)
-.-||+.+|..+++-++- ++++|+|+++|+||+++|+++.+.
T Consensus 189 fclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 189 FCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred hccccHhheeeeeeccCceeeecCCCCcEEEEecccCCccccc
Confidence 123899999999987654 577788999999999999988664
No 262
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.93 E-value=8.7e-05 Score=79.65 Aligned_cols=239 Identities=11% Similarity=0.090 Sum_probs=135.1
Q ss_pred eEEEEEEecC-----CEEEEEeCCCcEEEEECCCCe---EEEEecCCCCCccccccceEEEEEEc---CCeEEEEeCCCC
Q 046773 145 LTCRCLTLSD-----LYLACGFADGAVRLFDLTTRL---HVRTFRPQHSDRLGQFSRAVSGIIIT---DSQLIFATLDGD 213 (453)
Q Consensus 145 v~v~~lafs~-----~~LaSGS~D~TIrlWD~~tg~---~~~tl~gh~~~~~~~~s~~V~~i~f~---g~~LasgS~D~t 213 (453)
-.|-.+|+|+ -.+|+-|.-++| ||++.-.. --..|-||. ++|..+-|. ++.|+++|.|..
T Consensus 68 w~vad~qws~h~a~~~wiVsts~qkai-iwnlA~ss~~aIef~lhghs--------raitd~n~~~q~pdVlatcsvdt~ 138 (1081)
T KOG0309|consen 68 WQVADVQWSPHPAKPYWIVSTSNQKAI-IWNLAKSSSNAIEFVLHGHS--------RAITDINFNPQHPDVLATCSVDTY 138 (1081)
T ss_pred chhcceecccCCCCceeEEecCcchhh-hhhhhcCCccceEEEEecCc--------cceeccccCCCCCcceeecccccc
Confidence 3355677775 257777777776 79875332 223444543 467777776 468999999999
Q ss_pred EEEEEeecCCcceEEe---eecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeee
Q 046773 214 IHVAVIDDVANETRTA---HFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRML 290 (453)
Q Consensus 214 IkvWd~~~~g~~~~~~---~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l 290 (453)
++.||+.++-...+.. |.+ ...|..+-..- +.||+ |..+-|+|||.+-|... ++++
T Consensus 139 vh~wd~rSp~~p~ys~~~w~s~-----asqVkwnyk~p--~vlas-shg~~i~vwd~r~gs~p-------------l~s~ 197 (1081)
T KOG0309|consen 139 VHAWDMRSPHRPFYSTSSWRSA-----ASQVKWNYKDP--NVLAS-SHGNDIFVWDLRKGSTP-------------LCSL 197 (1081)
T ss_pred ceeeeccCCCcceeeeeccccc-----CceeeecccCc--chhhh-ccCCceEEEeccCCCcc-------------eEEe
Confidence 9999998743111111 111 11233322211 12454 77889999999887632 2557
Q ss_pred eeeccceeEEEEc---CCceEEEEcCCcEEEEECCCCceE-EEEeeccCCeEEEEEEecCCEEEEEeCCCccc--cC--c
Q 046773 291 TEFTEFVGRVRVT---SHESAVACTSSRVITFDLRNQGMV-LGERGYGRGLYVTSVDVNAEAYIVVENRELEN--QN--R 362 (453)
Q Consensus 291 ~~h~~~v~~v~~s---~~~~~vas~d~tIrlWDl~t~~~~-~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~--~~--~ 362 (453)
.+|...|+.+.|. -..++..+.|+|||.||-+..... .......-.+.-..+-|-|+++.+.-..|... ++ +
T Consensus 198 K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~ 277 (1081)
T KOG0309|consen 198 KGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCE 277 (1081)
T ss_pred cccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeecccc
Confidence 7888888888775 234566677899999998743211 11100000122234566666665544433110 00 0
Q ss_pred ceEEEEEcCC-CeeEEEEEecCCCeeEEEE--------eeCCC--eEEEEeC-CeEEEEECCC
Q 046773 363 RLAIVRRVDT-FEEVCRFSLRADRNVNVMG--------CMNQG--YALMCVE-GVIRVWEVEG 413 (453)
Q Consensus 363 ~~i~Iw~~~t-g~~v~~l~~~~~~v~~~~~--------~~~~~--~lls~s~-~tIrlWD~~t 413 (453)
+.-+.|+.-+ .+++++|.+|.+.|....+ .-+.+ +|++=+- .++|||-+.+
T Consensus 278 n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 278 NSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred chhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 0122343333 3679999999876543221 11111 3444444 9999998764
No 263
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.91 E-value=6.1e-05 Score=87.34 Aligned_cols=181 Identities=11% Similarity=0.127 Sum_probs=119.3
Q ss_pred CeEEEEeCCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCc
Q 046773 203 SQLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHN 282 (453)
Q Consensus 203 ~~LasgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~ 282 (453)
..-+|||.|+.|++|.+.. +.+.....+..- .......|+.+|.- ...+-.|+-+.+|-+. .+.+.+
T Consensus 2221 ~~Yltgs~dgsv~~~~w~~-~~~v~~~rt~g~-s~vtr~~f~~qGnk---~~i~d~dg~l~l~q~~-pk~~~s------- 2287 (2439)
T KOG1064|consen 2221 PYYLTGSQDGSVRMFEWGH-GQQVVCFRTAGN-SRVTRSRFNHQGNK---FGIVDGDGDLSLWQAS-PKPYTS------- 2287 (2439)
T ss_pred ceEEecCCCceEEEEeccC-CCeEEEeeccCc-chhhhhhhcccCCc---eeeeccCCceeecccC-Ccceec-------
Confidence 3678999999999999977 423322222211 00112578888764 2345679999999886 332221
Q ss_pred ceeeeeeeeeeccceeEEEEcCCceEEE--EcC-CcEEEEECCCC---ceEEEEeeccCCeEEEEEEecCCEEEEEeCCC
Q 046773 283 TVMGWRMLTEFTEFVGRVRVTSHESAVA--CTS-SRVITFDLRNQ---GMVLGERGYGRGLYVTSVDVNAEAYIVVENRE 356 (453)
Q Consensus 283 ~v~~w~~l~~h~~~v~~v~~s~~~~~va--s~d-~tIrlWDl~t~---~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg 356 (453)
| ++|.-....++|-+..++.+ |.| +.+.+||.--. .+++ +-|-++..+.++.|....+++++.+|
T Consensus 2288 ----~---qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G 2358 (2439)
T KOG1064|consen 2288 ----W---QCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKG 2358 (2439)
T ss_pred ----c---ccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcC
Confidence 2 24443444456655445554 233 67999996422 2334 55777777888888888999999999
Q ss_pred ccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecc
Q 046773 357 LENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRE 422 (453)
Q Consensus 357 ~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~g 422 (453)
.++|||+...+.+++++.- . -..+++++++ |.||||++..-..+++++.
T Consensus 2359 -------~v~l~D~rqrql~h~~~~~---------~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2359 -------EVCLFDIRQRQLRHTFQAL---------D-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred -------cEEEeehHHHHHHHHhhhh---------h-hhheeeccCcccceEEEEccccchhhcCch
Confidence 9999999876655554320 1 1345667777 9999999999899999864
No 264
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=97.91 E-value=2.8e-05 Score=80.73 Aligned_cols=87 Identities=14% Similarity=0.048 Sum_probs=71.0
Q ss_pred EEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEE
Q 046773 340 TSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMY 418 (453)
Q Consensus 340 ~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~ 418 (453)
.+|++||..||++|.|| .+||.+.++-+.+..+.-=-.+...+.++||++|+++++. --|.||.++.++.+.
T Consensus 296 f~FS~DG~~LA~VSqDG-------fLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVA 368 (636)
T KOG2394|consen 296 FAFSPDGKYLATVSQDG-------FLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVA 368 (636)
T ss_pred eeEcCCCceEEEEecCc-------eEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEE
Confidence 46788899999999999 9999999986544443221244678889999999999887 899999999999998
Q ss_pred EecccCCceEEEEecC
Q 046773 419 SFRERIGEEVIAFVGD 434 (453)
Q Consensus 419 tL~gh~~~~V~a~s~d 434 (453)
.=.||..+ |..+.+|
T Consensus 369 RGqGHkSW-Vs~VaFD 383 (636)
T KOG2394|consen 369 RGQGHKSW-VSVVAFD 383 (636)
T ss_pred eccccccc-eeeEeec
Confidence 88899988 8865555
No 265
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=97.88 E-value=0.00089 Score=70.37 Aligned_cols=177 Identities=14% Similarity=0.142 Sum_probs=107.0
Q ss_pred EEEEeCCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc---EEeccccc
Q 046773 205 LIFATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE---VFVGGDLT 279 (453)
Q Consensus 205 LasgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~---~~~g~~l~ 279 (453)
|..++....|.=.|++. | ++++..-.+.+. .|..++.-. .|+.|..|++|..||.++.. ++.-.
T Consensus 148 ly~~gsg~evYRlNLEq-GrfL~P~~~~~~~lN----~v~in~~hg---Lla~Gt~~g~VEfwDpR~ksrv~~l~~~--- 216 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQ-GRFLNPFETDSGELN----VVSINEEHG---LLACGTEDGVVEFWDPRDKSRVGTLDAA--- 216 (703)
T ss_pred EEEeecCcceEEEEccc-cccccccccccccce----eeeecCccc---eEEecccCceEEEecchhhhhheeeecc---
Confidence 44444444555557776 5 566665444332 355555544 37889999999999999876 22110
Q ss_pred CCcceeeeeeeeeeccceeEEEEcCCceEEE--EcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCC--EEEEEeCC
Q 046773 280 DHNTVMGWRMLTEFTEFVGRVRVTSHESAVA--CTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAE--AYIVVENR 355 (453)
Q Consensus 280 ~~~~v~~w~~l~~h~~~v~~v~~s~~~~~va--s~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~--~l~s~s~d 355 (453)
..|.. +.-..-.-.|.++.|+.+++-+| .+.+.|-|+||++.+-++. ..|.....+..+++... .-.++|.|
T Consensus 217 --~~v~s-~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~-kdh~~e~pi~~l~~~~~~~q~~v~S~D 292 (703)
T KOG2321|consen 217 --SSVNS-HPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV-KDHGYELPIKKLDWQDTDQQNKVVSMD 292 (703)
T ss_pred --cccCC-CccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee-cccCCccceeeecccccCCCceEEecc
Confidence 00000 00001123488999998776444 5678999999998754433 45666677777765322 22334555
Q ss_pred CccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC
Q 046773 356 ELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE 403 (453)
Q Consensus 356 g~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~ 403 (453)
. +.+|||+-.+|+....+.... .+..+.+.|+++.++++-+
T Consensus 293 k------~~~kiWd~~~Gk~~asiEpt~-~lND~C~~p~sGm~f~Ane 333 (703)
T KOG2321|consen 293 K------RILKIWDECTGKPMASIEPTS-DLNDFCFVPGSGMFFTANE 333 (703)
T ss_pred h------HHhhhcccccCCceeeccccC-CcCceeeecCCceEEEecC
Confidence 5 389999999998765553222 2555666677787777655
No 266
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.88 E-value=2.6e-05 Score=79.77 Aligned_cols=225 Identities=10% Similarity=0.057 Sum_probs=133.5
Q ss_pred EEEEec--CCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE-cCCeEEEEeCCCCEEEEEeecCCc
Q 046773 148 RCLTLS--DLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII-TDSQLIFATLDGDIHVAVIDDVAN 224 (453)
Q Consensus 148 ~~lafs--~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f-~g~~LasgS~D~tIkvWd~~~~g~ 224 (453)
+.+.|+ |..|+-|+.-|-|-..|..|++....+.-- ..|+.+.| .....+....-+-+.|+|-....+
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~---------Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtEl 203 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM---------ETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTEL 203 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceeeeeeehh---------hhhhhhhhhcchHHHHhhhhceEEEecCCCcEE
Confidence 566664 678999999999999999999987666421 13444543 233222223334456666443225
Q ss_pred ceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcC
Q 046773 225 ETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTS 304 (453)
Q Consensus 225 ~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~ 304 (453)
|+++.|..- ..+.|-|- ++ .|+++|.-+-++-=|+.+|++..-. +.-.+.+..++-+|
T Consensus 204 HClk~~~~v-----~rLeFLPy-Hf--LL~~~~~~G~L~Y~DVS~GklVa~~--------------~t~~G~~~vm~qNP 261 (545)
T KOG1272|consen 204 HCLKRHIRV-----ARLEFLPY-HF--LLVAASEAGFLKYQDVSTGKLVASI--------------RTGAGRTDVMKQNP 261 (545)
T ss_pred eehhhcCch-----hhhcccch-hh--eeeecccCCceEEEeechhhhhHHH--------------HccCCccchhhcCC
Confidence 666554321 12566665 32 4889999999999999999832100 00001111222233
Q ss_pred Cce--EEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEec
Q 046773 305 HES--AVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLR 382 (453)
Q Consensus 305 ~~~--~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~ 382 (453)
-.- -++-+.++|-||.+.+..-+....-|...+...++++.|...++.+.|. .++|||+.....+.+...
T Consensus 262 ~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr-------~~kIWDlR~~~ql~t~~t- 333 (545)
T KOG1272|consen 262 YNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDR-------KVKIWDLRNFYQLHTYRT- 333 (545)
T ss_pred ccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccccc-------ceeEeeeccccccceeec-
Confidence 332 2334568999999988653322222433444566778888889988888 999999998765555433
Q ss_pred CCCeeEEEEeeCCCeEEEEeC-CeEEEE-ECCC
Q 046773 383 ADRNVNVMGCMNQGYALMCVE-GVIRVW-EVEG 413 (453)
Q Consensus 383 ~~~v~~~~~~~~~~~lls~s~-~tIrlW-D~~t 413 (453)
|.....+.++ .+-+++++- ..|.|| |.-.
T Consensus 334 p~~a~~ls~S--qkglLA~~~G~~v~iw~d~~~ 364 (545)
T KOG1272|consen 334 PHPASNLSLS--QKGLLALSYGDHVQIWKDALK 364 (545)
T ss_pred CCCccccccc--cccceeeecCCeeeeehhhhc
Confidence 3323344433 333444444 789999 4433
No 267
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=0.0024 Score=67.02 Aligned_cols=64 Identities=16% Similarity=0.337 Sum_probs=50.0
Q ss_pred EEEEeeCCCeEEEEeC----CeEEEEECCCCeEEEEecccCCceEEEEecCCCEEEEE--e-----CCcEEEEecC
Q 046773 388 NVMGCMNQGYALMCVE----GVIRVWEVEGGEYMYSFRERIGEEVIAFVGDDRHVAAS--C-----GTNIHLWDFG 452 (453)
Q Consensus 388 ~~~~~~~~~~lls~s~----~tIrlWD~~tG~~l~tL~gh~~~~V~a~s~d~~~lasg--~-----D~~IklWDl~ 452 (453)
.+.|+|.+.+++.++- |.|.+||+.+-++|..+..-... +..++|||.++.++ . |+.||||+..
T Consensus 316 ~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt-~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 316 TAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTT-VFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred ceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCce-EEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 4556667777766542 89999999999999888655444 66899999998876 3 9999999863
No 268
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.82 E-value=5e-05 Score=51.41 Aligned_cols=37 Identities=32% Similarity=0.356 Sum_probs=31.8
Q ss_pred CeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEE
Q 046773 174 RLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAV 218 (453)
Q Consensus 174 g~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd 218 (453)
|+|+++|.+|.. .|.+++|+ +..|++||.|++|+|||
T Consensus 1 g~~~~~~~~h~~--------~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSS--------SINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSS--------SEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCC--------cEEEEEEecccccceeeCCCCEEEEEC
Confidence 578999998765 68888875 57899999999999997
No 269
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.76 E-value=0.0025 Score=63.22 Aligned_cols=110 Identities=14% Similarity=0.028 Sum_probs=68.8
Q ss_pred EEEEEecCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CC-eEEEEeCCCCEEEEEeecCC
Q 046773 147 CRCLTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DS-QLIFATLDGDIHVAVIDDVA 223 (453)
Q Consensus 147 v~~lafs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~-~LasgS~D~tIkvWd~~~~g 223 (453)
..|+..++++|||.+.- .+-|=|.+|-+..+.|.- .+.|.-|... .- +|--.+.|..|.||++..+.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c---------ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe 82 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC---------LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE 82 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH---------HHHhhheeeeccceeeeeeeeccceEEEEEeecce
Confidence 35666677999999966 666778877764333221 0122223332 22 35556788899999987633
Q ss_pred cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc
Q 046773 224 NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE 271 (453)
Q Consensus 224 ~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~ 271 (453)
...-. -.+. ..-..+..|||||- .|-+.+.|-.|.||.+.|..
T Consensus 83 w~ckI-deg~--agls~~~WSPdgrh--iL~tseF~lriTVWSL~t~~ 125 (447)
T KOG4497|consen 83 WYCKI-DEGQ--AGLSSISWSPDGRH--ILLTSEFDLRITVWSLNTQK 125 (447)
T ss_pred eEEEe-ccCC--CcceeeeECCCcce--EeeeecceeEEEEEEeccce
Confidence 11110 0110 11124789999986 36788999999999999987
No 270
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.76 E-value=0.00019 Score=72.31 Aligned_cols=99 Identities=12% Similarity=0.066 Sum_probs=65.3
Q ss_pred CcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEE-ecCCCeeEEEEe
Q 046773 314 SRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFS-LRADRNVNVMGC 392 (453)
Q Consensus 314 ~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~-~~~~~v~~~~~~ 392 (453)
..+.+|....+.+ ..+.||..-..-.++++|+..++++..|. .|||-..+..--+..|- +|.+=|.++..-
T Consensus 132 ~~~di~s~~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDE-------kIRvs~ypa~f~IesfclGH~eFVS~isl~ 203 (390)
T KOG3914|consen 132 YSFDILSADSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDE-------KIRVSRYPATFVIESFCLGHKEFVSTISLT 203 (390)
T ss_pred eeeeeecccccCc-chhhhhhhhhheeeecCCCCEEEEecCCc-------eEEEEecCcccchhhhccccHhheeeeeec
Confidence 5688888876433 34467876666678899999999988888 66665444332233332 244334443322
Q ss_pred eCCCeEEEEeC-CeEEEEECCCCeEEEEec
Q 046773 393 MNQGYALMCVE-GVIRVWEVEGGEYMYSFR 421 (453)
Q Consensus 393 ~~~~~lls~s~-~tIrlWD~~tG~~l~tL~ 421 (453)
+...|+++++ +|||+||.++|++|+++.
T Consensus 204 -~~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 204 -DNYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred -cCceeeecCCCCcEEEEecccCCcccccc
Confidence 3344566666 999999999999998863
No 271
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.76 E-value=0.0014 Score=65.14 Aligned_cols=195 Identities=12% Similarity=0.070 Sum_probs=105.2
Q ss_pred CEEEEEeCCCcEEEEE-CCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecC-----Ccce
Q 046773 155 LYLACGFADGAVRLFD-LTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDV-----ANET 226 (453)
Q Consensus 155 ~~LaSGS~D~TIrlWD-~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~-----g~~~ 226 (453)
+-+.+.|.|.|+|||- .+.|+--+.+. |... ..++++++. -++|+-|=.-+++--..+... -.+.
T Consensus 37 ~gv~~~s~drtvrv~lkrds~q~wpsI~-~~mP------~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~ 109 (404)
T KOG1409|consen 37 EGVISVSEDRTVRVWLKRDSGQYWPSIY-HYMP------SPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKD 109 (404)
T ss_pred CCeEEccccceeeeEEeccccccCchhh-hhCC------CCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhh
Confidence 5789999999999995 56666554443 2211 245555554 334554444445433322110 0122
Q ss_pred EEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccc----------------c-----------
Q 046773 227 RTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDL----------------T----------- 279 (453)
Q Consensus 227 ~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l----------------~----------- 279 (453)
+..|...+. .+-|+-.-.| ++|.+.|+.+.=-=.+.|..+-+..+ .
T Consensus 110 ~~~h~~~v~----~~if~~~~e~---V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~ 182 (404)
T KOG1409|consen 110 YLAHQARVS----AIVFSLTHEW---VLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKL 182 (404)
T ss_pred hhhhhccee----eEEecCCcee---EEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEE
Confidence 223433332 2445544444 45666666553222333331110000 0
Q ss_pred CCcceeeeeeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEE-EeeccCCeEEEEEE--ecCCEEEEEeC
Q 046773 280 DHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLG-ERGYGRGLYVTSVD--VNAEAYIVVEN 354 (453)
Q Consensus 280 ~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~-~~g~~~~~~v~~~~--~~g~~l~s~s~ 354 (453)
.++.....-++.+|++.+.++..++.. ++++..|..|-+||+--++-+.. +.+|.+ .|.++. .--..+++++.
T Consensus 183 ~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~--kV~~l~~~~~t~~l~S~~e 260 (404)
T KOG1409|consen 183 EQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHND--KVQALSYAQHTRQLISCGE 260 (404)
T ss_pred eecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchh--hhhhhhhhhhheeeeeccC
Confidence 012222234678999999999888654 45556678899999975432222 244443 334433 33356788888
Q ss_pred CCccccCcceEEEEEcCC
Q 046773 355 RELENQNRRLAIVRRVDT 372 (453)
Q Consensus 355 dg~~~~~~~~i~Iw~~~t 372 (453)
|+ -|-+|+++.
T Consensus 261 dg-------~i~~w~mn~ 271 (404)
T KOG1409|consen 261 DG-------GIVVWNMNV 271 (404)
T ss_pred CC-------eEEEEeccc
Confidence 88 999999874
No 272
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.75 E-value=9.5e-05 Score=85.83 Aligned_cols=169 Identities=8% Similarity=0.084 Sum_probs=114.1
Q ss_pred EEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEE
Q 046773 253 LYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGE 330 (453)
Q Consensus 253 LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~ 330 (453)
..|||.|+.||+|.--.++... .|+++-. +.|.+.+|+..+ .-++..|+.+-+|-+... +. .
T Consensus 2223 Yltgs~dgsv~~~~w~~~~~v~-----------~~rt~g~--s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk--~~-~ 2286 (2439)
T KOG1064|consen 2223 YLTGSQDGSVRMFEWGHGQQVV-----------CFRTAGN--SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPK--PY-T 2286 (2439)
T ss_pred EEecCCCceEEEEeccCCCeEE-----------EeeccCc--chhhhhhhcccCCceeeeccCCceeecccCCc--ce-e
Confidence 4589999999999987777321 2333322 567778887443 445556889999998732 11 1
Q ss_pred eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCC---eeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeE
Q 046773 331 RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTF---EEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVI 406 (453)
Q Consensus 331 ~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg---~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tI 406 (453)
.++-|......|.|-+..++++..+. ..+.+.+||.... .++. +.|+.++..+++.|.-..+++++- |.|
T Consensus 2287 s~qchnk~~~Df~Fi~s~~~tag~s~----d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v 2360 (2439)
T KOG1064|consen 2287 SWQCHNKALSDFRFIGSLLATAGRSS----DNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEV 2360 (2439)
T ss_pred ccccCCccccceeeeehhhhccccCC----CCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcE
Confidence 23333444456767676666654332 1237889986532 3444 778888888888887777777776 999
Q ss_pred EEEECCCCeEEEEecccCCceEEEEecCCCEEEEE-eCCcEEEEecC
Q 046773 407 RVWEVEGGEYMYSFRERIGEEVIAFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 407 rlWD~~tG~~l~tL~gh~~~~V~a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
+|||+...+.+++++. +. ...++++| ..|.||||++.
T Consensus 2361 ~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2361 CLFDIRQRQLRHTFQA--------LD-TREYFVTGSSEGNIKIWRLS 2398 (2439)
T ss_pred EEeehHHHHHHHHhhh--------hh-hhheeeccCcccceEEEEcc
Confidence 9999998888777643 12 23467888 99999999975
No 273
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.71 E-value=0.077 Score=54.05 Aligned_cols=190 Identities=16% Similarity=0.155 Sum_probs=110.8
Q ss_pred EEEEeCCCceeeEEEEeeC----CCeEEEeeCCC--CcE-EecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEE
Q 046773 240 LIDFTGCSRYWVGLYAGLA----GRAFHIWDRQA--EEV-FVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVA 310 (453)
Q Consensus 240 ~v~Fs~dg~~~~~LaSgS~----D~tIrvWD~~t--g~~-~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~va 310 (453)
-|+++|++++ |++... ++.|-.+++.. |++ +.. ........-..+++++++ ++++
T Consensus 41 ~l~~~~~~~~---LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~-------------~~~~~g~~p~~i~~~~~g~~l~va 104 (345)
T PF10282_consen 41 WLAVSPDGRR---LYVVNEGSGDSGGVSSYRIDPDTGTLTLLN-------------SVPSGGSSPCHIAVDPDGRFLYVA 104 (345)
T ss_dssp CEEE-TTSSE---EEEEETTSSTTTEEEEEEEETTTTEEEEEE-------------EEEESSSCEEEEEECTTSSEEEEE
T ss_pred eEEEEeCCCE---EEEEEccccCCCCEEEEEECCCcceeEEee-------------eeccCCCCcEEEEEecCCCEEEEE
Confidence 3899999987 666554 56888888776 442 111 111011223468888766 4555
Q ss_pred Ec-CCcEEEEECCCCceEEEE---e---ecc--------CCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCe-
Q 046773 311 CT-SSRVITFDLRNQGMVLGE---R---GYG--------RGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFE- 374 (453)
Q Consensus 311 s~-d~tIrlWDl~t~~~~~~~---~---g~~--------~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~- 374 (453)
.. +++|-++++...+.+... . +++ ...-...++|+++.+++..... | .|.+++++...
T Consensus 105 ny~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~-----D-~v~~~~~~~~~~ 178 (345)
T PF10282_consen 105 NYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGA-----D-RVYVYDIDDDTG 178 (345)
T ss_dssp ETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTT-----T-EEEEEEE-TTS-
T ss_pred EccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCC-----C-EEEEEEEeCCCc
Confidence 53 589999999874333221 1 100 0111346788888877665433 1 67888887643
Q ss_pred -e--EEEEEec-CCCeeEEEEeeCCCeEEEEeC--CeEEEEECC--CCeE--EEE---ecc-cCC--ceE-EEEecCCCE
Q 046773 375 -E--VCRFSLR-ADRNVNVMGCMNQGYALMCVE--GVIRVWEVE--GGEY--MYS---FRE-RIG--EEV-IAFVGDDRH 437 (453)
Q Consensus 375 -~--v~~l~~~-~~~v~~~~~~~~~~~lls~s~--~tIrlWD~~--tG~~--l~t---L~g-h~~--~~V-~a~s~d~~~ 437 (453)
. ...+... ..+-|.++|+++++++..... ++|.++++. +|+. +.+ +.. ..+ ..- .+++||+++
T Consensus 179 ~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~ 258 (345)
T PF10282_consen 179 KLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRF 258 (345)
T ss_dssp TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSE
T ss_pred eEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCE
Confidence 2 2233333 355788999999998876665 999999988 5533 332 221 111 101 168899998
Q ss_pred EEEE--eCCcEEEEec
Q 046773 438 VAAS--CGTNIHLWDF 451 (453)
Q Consensus 438 lasg--~D~~IklWDl 451 (453)
|..+ .+++|-++++
T Consensus 259 lyvsnr~~~sI~vf~~ 274 (345)
T PF10282_consen 259 LYVSNRGSNSISVFDL 274 (345)
T ss_dssp EEEEECTTTEEEEEEE
T ss_pred EEEEeccCCEEEEEEE
Confidence 8544 7789999987
No 274
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.70 E-value=0.03 Score=55.91 Aligned_cols=108 Identities=9% Similarity=0.085 Sum_probs=56.9
Q ss_pred CcEEEEECCCCceEEEEee--ccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecC-------C
Q 046773 314 SRVITFDLRNQGMVLGERG--YGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRA-------D 384 (453)
Q Consensus 314 ~tIrlWDl~t~~~~~~~~g--~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~-------~ 384 (453)
..+-+-|..+|+.+-+... .-++..+.-++.+++..+.....-+.+..+.---|-...-++.+..+...+ +
T Consensus 138 psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~ 217 (305)
T PF07433_consen 138 PSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNG 217 (305)
T ss_pred CceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCC
Confidence 3444556777765443211 224455666666655544433222111111111222222333333333221 2
Q ss_pred CeeEEEEeeCCCeEEEEeC--CeEEEEECCCCeEEEEec
Q 046773 385 RNVNVMGCMNQGYALMCVE--GVIRVWEVEGGEYMYSFR 421 (453)
Q Consensus 385 ~v~~~~~~~~~~~lls~s~--~tIrlWD~~tG~~l~tL~ 421 (453)
-+-+++++.+++.+++++- +.+-+||.++|+++....
T Consensus 218 Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 218 YIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP 256 (305)
T ss_pred ceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc
Confidence 2557788888877766664 899999999999987664
No 275
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.66 E-value=0.0012 Score=65.37 Aligned_cols=181 Identities=12% Similarity=0.154 Sum_probs=100.8
Q ss_pred EEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce---EEEEcCCcEE
Q 046773 241 IDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES---AVACTSSRVI 317 (453)
Q Consensus 241 v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~---~vas~d~tIr 317 (453)
-.|||+|++ +||.+.- -+-|-|.+|=+.+. |--.-+.|..+-..-+.. .++.-+..|.
T Consensus 14 c~fSp~g~y---iAs~~~y-rlviRd~~tlq~~q---------------lf~cldki~yieW~ads~~ilC~~yk~~~vq 74 (447)
T KOG4497|consen 14 CSFSPCGNY---IASLSRY-RLVIRDSETLQLHQ---------------LFLCLDKIVYIEWKADSCHILCVAYKDPKVQ 74 (447)
T ss_pred eeECCCCCe---eeeeeee-EEEEeccchhhHHH---------------HHHHHHHhhheeeeccceeeeeeeeccceEE
Confidence 479999998 6777653 56677777755210 000012222222222332 2334567999
Q ss_pred EEECCCCceEEE-EeeccCCeEEEEEEecCCEEEE-EeCCCccccCcceEEEEEcCCCeeEEEEEecC-CCeeEEEEeeC
Q 046773 318 TFDLRNQGMVLG-ERGYGRGLYVTSVDVNAEAYIV-VENRELENQNRRLAIVRRVDTFEEVCRFSLRA-DRNVNVMGCMN 394 (453)
Q Consensus 318 lWDl~t~~~~~~-~~g~~~~~~v~~~~~~g~~l~s-~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~-~~v~~~~~~~~ 394 (453)
+|++...+---. ..|+. +....+.+|+|+.+.. .+-+- -|+||.+.|-.+... -++ ..+..++|+++
T Consensus 75 vwsl~Qpew~ckIdeg~a-gls~~~WSPdgrhiL~tseF~l-------riTVWSL~t~~~~~~--~~pK~~~kg~~f~~d 144 (447)
T KOG4497|consen 75 VWSLVQPEWYCKIDEGQA-GLSSISWSPDGRHILLTSEFDL-------RITVWSLNTQKGYLL--PHPKTNVKGYAFHPD 144 (447)
T ss_pred EEEeecceeEEEeccCCC-cceeeeECCCcceEeeeeccee-------EEEEEEeccceeEEe--cccccCceeEEECCC
Confidence 999997642211 23432 3344668899966554 44455 889999988654322 122 33566777777
Q ss_pred CCeEEEEe------------------------------------C-CeEEEEECCCCeEEEEecccCCceEEEEecCCCE
Q 046773 395 QGYALMCV------------------------------------E-GVIRVWEVEGGEYMYSFRERIGEEVIAFVGDDRH 437 (453)
Q Consensus 395 ~~~lls~s------------------------------------~-~tIrlWD~~tG~~l~tL~gh~~~~V~a~s~d~~~ 437 (453)
+++.+.++ + +-+-+||.--.--++..+--.|-...+.+|-++.
T Consensus 145 g~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qf 224 (447)
T KOG4497|consen 145 GQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQF 224 (447)
T ss_pred CceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccce
Confidence 76654432 1 3455665432222222211112111267899999
Q ss_pred EEEE-eCCcEEEEe
Q 046773 438 VAAS-CGTNIHLWD 450 (453)
Q Consensus 438 lasg-~D~~IklWD 450 (453)
|+.| +|+++||-+
T Consensus 225 lavGsyD~~lrvln 238 (447)
T KOG4497|consen 225 LAVGSYDQMLRVLN 238 (447)
T ss_pred EEeeccchhhhhhc
Confidence 9999 999998753
No 276
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.66 E-value=0.054 Score=56.67 Aligned_cols=278 Identities=14% Similarity=0.156 Sum_probs=142.7
Q ss_pred EEEEEecC--CEEEEEeCCC---------------cEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEe
Q 046773 147 CRCLTLSD--LYLACGFADG---------------AVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFAT 209 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~---------------TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS 209 (453)
|+-+.||| +||+|=++-. .+.+||+.+|..+.++.+-...-.+ + .+.-...++..+|--
T Consensus 74 V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~-W--p~~k~s~~D~y~ARv- 149 (561)
T COG5354 74 VKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLG-W--PVLKFSIDDKYVARV- 149 (561)
T ss_pred ceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccc-c--ceeeeeecchhhhhh-
Confidence 67788886 6898865543 4899999999999999864432000 0 122223344433322
Q ss_pred CCCCEEEEEeecCC-----cceEEeeecceecCceEEEEeCCCceeeEEE-----EeeCCCeEEEeeCCCCcEEeccccc
Q 046773 210 LDGDIHVAVIDDVA-----NETRTAHFGSVMDDGVLIDFTGCSRYWVGLY-----AGLAGRAFHIWDRQAEEVFVGGDLT 279 (453)
Q Consensus 210 ~D~tIkvWd~~~~g-----~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~La-----SgS~D~tIrvWD~~tg~~~~g~~l~ 279 (453)
....++|.++ +.. .+.++. .++. -..++|-|.-- .|| ....+.+++||.+-.+..+..+++-
T Consensus 150 v~~sl~i~e~-t~n~~~~p~~~lr~--~gi~----dFsisP~~n~~-~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lf 221 (561)
T COG5354 150 VGSSLYIHEI-TDNIEEHPFKNLRP--VGIL----DFSISPEGNHD-ELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLF 221 (561)
T ss_pred ccCeEEEEec-CCccccCchhhccc--ccee----eEEecCCCCCc-eEEEEccccCCCCcEEEEEEccCCCeeeeeeeE
Confidence 2334667665 211 122220 1110 13344442210 122 2456788899988766644322211
Q ss_pred CCcceee-eeeeeeeccceeEEEE----cCCceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeC
Q 046773 280 DHNTVMG-WRMLTEFTEFVGRVRV----TSHESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVEN 354 (453)
Q Consensus 280 ~~~~v~~-w~~l~~h~~~v~~v~~----s~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~ 354 (453)
....+.. |+.+- .....+.. +....+ +..++.|.+++...+. .+.+-...+.-.++.|.+++.++.++
T Consensus 222 k~~~~qLkW~~~g---~~ll~l~~t~~ksnKsyf---gesnLyl~~~~e~~i~-V~~~~~~pVhdf~W~p~S~~F~vi~g 294 (561)
T COG5354 222 KVSGVQLKWQVLG---KYLLVLVMTHTKSNKSYF---GESNLYLLRITERSIP-VEKDLKDPVHDFTWEPLSSRFAVISG 294 (561)
T ss_pred eecccEEEEecCC---ceEEEEEEEeeeccccee---ccceEEEEeecccccc-eeccccccceeeeecccCCceeEEec
Confidence 1111110 11100 00000000 000000 1135677777644332 22111111122455667777776663
Q ss_pred CCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEe-C---CeEEEEECCCC-eEEEEecccCCceEE
Q 046773 355 RELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCV-E---GVIRVWEVEGG-EYMYSFRERIGEEVI 429 (453)
Q Consensus 355 dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s-~---~tIrlWD~~tG-~~l~tL~gh~~~~V~ 429 (453)
-. ..++.+.++... .+ +.+-+..-..+.|+|..++++.++ + +.|-+||.... +|..++.|-.-. +.
T Consensus 295 ~~-----pa~~s~~~lr~N-l~--~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s-~~ 365 (561)
T COG5354 295 YM-----PASVSVFDLRGN-LR--FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTS-YC 365 (561)
T ss_pred cc-----ccceeecccccc-eE--EecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCce-Ee
Confidence 32 116666666643 11 222223344677888899988765 2 89999999875 555577666555 56
Q ss_pred EEecCCCEEEEE-------eCCcEEEEecC
Q 046773 430 AFVGDDRHVAAS-------CGTNIHLWDFG 452 (453)
Q Consensus 430 a~s~d~~~lasg-------~D~~IklWDl~ 452 (453)
.++||+.++-++ .|+.|+|||+.
T Consensus 366 ~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 366 DWSPDGQFYDTDTTSEKLRVDNSIKLWDVY 395 (561)
T ss_pred eccCCceEEEecCCCcccccCcceEEEEec
Confidence 789999987543 28999999975
No 277
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=97.63 E-value=3.9e-05 Score=54.84 Aligned_cols=46 Identities=22% Similarity=0.433 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHhhhhhhHhHhhhhhHHhhcccchhccCCchhHHHhhh
Q 046773 46 VEALAAQVAIEASRSVGRLAAAAALANVFQVCSTWRAVSRSDLLWHRLTR 95 (453)
Q Consensus 46 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~aqv~~~W~~l~~~~~~w~~~~~ 95 (453)
+..||.|+..+|+.|++ ..+++.+++||++|+.+.++..+|.+.|+
T Consensus 3 ~~~LP~~il~~Il~~l~----~~~~~~l~~vsk~~~~~~~~~~~~~~~~r 48 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLD----PKDLLRLSLVSKRWRSLVDSPRLWKKIIR 48 (48)
T ss_dssp HHHS-HHHHHHHHHTS-----HHHHHHHCTT-HHHHHHHTTHHHHHHHH-
T ss_pred HHHCCHHHHHHHHHHCc----HHHHHHHHHHhhHHHHHHcCCCccHHHhC
Confidence 47899999999999987 66999999999999999999999988764
No 278
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.58 E-value=0.073 Score=54.50 Aligned_cols=80 Identities=9% Similarity=0.096 Sum_probs=56.6
Q ss_pred EEEEecCCEEEEEeCCC-ccc--cCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCC-eEEEEeC--CeEEEEECCC
Q 046773 340 TSVDVNAEAYIVVENRE-LEN--QNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQG-YALMCVE--GVIRVWEVEG 413 (453)
Q Consensus 340 ~~~~~~g~~l~s~s~dg-~~~--~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~-~lls~s~--~tIrlWD~~t 413 (453)
.+++++++++..+...+ ... .+.+.+-+.|+.+++.+..+... .....+++++|++ .+.+... ++|.+-|+++
T Consensus 253 ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG-~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 253 VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG-HEIDSINVSQDAKPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred EEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC-CceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence 67888888877643211 000 11226777788888888877542 3467889999999 6665553 8999999999
Q ss_pred CeEEEEe
Q 046773 414 GEYMYSF 420 (453)
Q Consensus 414 G~~l~tL 420 (453)
++.+.++
T Consensus 332 ~k~i~~i 338 (352)
T TIGR02658 332 GKELSSV 338 (352)
T ss_pred CeEEeee
Confidence 9999887
No 279
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.54 E-value=0.0034 Score=61.81 Aligned_cols=246 Identities=11% Similarity=0.193 Sum_probs=130.2
Q ss_pred eEEEEEEc--CCeEEEEeCCCCEEEEEeec-CC-----cceEEeeeccee-------cCce-EE-EEeCCCceeeEEEEe
Q 046773 194 AVSGIIIT--DSQLIFATLDGDIHVAVIDD-VA-----NETRTAHFGSVM-------DDGV-LI-DFTGCSRYWVGLYAG 256 (453)
Q Consensus 194 ~V~~i~f~--g~~LasgS~D~tIkvWd~~~-~g-----~~~~~~~~~~v~-------~~~~-~v-~Fs~dg~~~~~LaSg 256 (453)
.++++.|+ |..|++|-..|.+.++.-+. .| ...++.|...+. .+.+ .+ -|.+.|+- -.|.|
T Consensus 28 ~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~-hFLls- 105 (460)
T COG5170 28 KITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRN-HFLLS- 105 (460)
T ss_pred eeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcc-eEEEe-
Confidence 35667776 66788877778777765332 12 122444533221 0111 12 34555443 22444
Q ss_pred eCCCeEEEeeCCCCcE--------------EecccccCCcc-----------eeeee----eeeeeccceeEEEEcCCc-
Q 046773 257 LAGRAFHIWDRQAEEV--------------FVGGDLTDHNT-----------VMGWR----MLTEFTEFVGRVRVTSHE- 306 (453)
Q Consensus 257 S~D~tIrvWD~~tg~~--------------~~g~~l~~~~~-----------v~~w~----~l~~h~~~v~~v~~s~~~- 306 (453)
..|+|||||-+....+ ..|+.++.+.. +..-. ....|+-.++++.|..+.
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 6899999998876520 01222211100 00000 124667778889987665
Q ss_pred eEEEEcCCcEEEEECCCCceEEEE---eeccCC---eEEE--EEEecC-CEEEEEeCCCccccCcceEEEEEcCCC----
Q 046773 307 SAVACTSSRVITFDLRNQGMVLGE---RGYGRG---LYVT--SVDVNA-EAYIVVENRELENQNRRLAIVRRVDTF---- 373 (453)
Q Consensus 307 ~~vas~d~tIrlWDl~t~~~~~~~---~g~~~~---~~v~--~~~~~g-~~l~s~s~dg~~~~~~~~i~Iw~~~tg---- 373 (453)
++++++|-.|-||+++-....... ..|... ..++ .|+|.- +.+.-.|+.| +|++-|+...
T Consensus 186 t~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG-------~Ikl~DlRq~alcd 258 (460)
T COG5170 186 TLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKG-------EIKLNDLRQSALCD 258 (460)
T ss_pred eeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCC-------cEEehhhhhhhhcc
Confidence 556566678999999753211111 111100 0012 233332 2344456677 8998877621
Q ss_pred --eeEEEEEecC----------CCeeEEEEeeCCCeEEEEeCCeEEEEECCC-CeEEEEecccC------------CceE
Q 046773 374 --EEVCRFSLRA----------DRNVNVMGCMNQGYALMCVEGVIRVWEVEG-GEYMYSFRERI------------GEEV 428 (453)
Q Consensus 374 --~~v~~l~~~~----------~~v~~~~~~~~~~~lls~s~~tIrlWD~~t-G~~l~tL~gh~------------~~~V 428 (453)
..+..++..+ ..+..+-|+++++++++-.--||+|||+.. ..|+.|++-|. +. |
T Consensus 259 n~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDa-i 337 (460)
T COG5170 259 NSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDA-I 337 (460)
T ss_pred CchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccc-e
Confidence 1111111111 113335677788887654449999999986 47888887663 22 3
Q ss_pred E-----EEecCCCEEEEE-eCCcEEEE
Q 046773 429 I-----AFVGDDRHVAAS-CGTNIHLW 449 (453)
Q Consensus 429 ~-----a~s~d~~~lasg-~D~~IklW 449 (453)
. .|+.|++.+.|| +.+..-|+
T Consensus 338 fdkFeisfSgd~~~v~sgsy~NNfgiy 364 (460)
T COG5170 338 FDKFEISFSGDDKHVLSGSYSNNFGIY 364 (460)
T ss_pred eeeEEEEecCCcccccccccccceeee
Confidence 3 567788888887 65544443
No 280
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.51 E-value=0.021 Score=56.04 Aligned_cols=150 Identities=17% Similarity=0.227 Sum_probs=90.2
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEE--E--cCCeEEEEeCCCCEEEEEeecCC---cceEE
Q 046773 156 YLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGII--I--TDSQLIFATLDGDIHVAVIDDVA---NETRT 228 (453)
Q Consensus 156 ~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~--f--~g~~LasgS~D~tIkvWd~~~~g---~~~~~ 228 (453)
.|+-+-.++.|.++....-+....|+|-...... .+.++. + .+..++++-.++.+.+=+....- .+..+
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~----~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk 162 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKIS----VVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWK 162 (339)
T ss_pred eeeeccccceEEEEeeccceeeeeecccchhhhh----heeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccc
Confidence 3555556677888877776666666653321110 111333 3 36677777667776632221100 13445
Q ss_pred eeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCC---
Q 046773 229 AHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSH--- 305 (453)
Q Consensus 229 ~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~--- 305 (453)
.|.-... ...|+.... +.+++||.|+.+.-||++....+. |+..+-|+.-|.++.-+|.
T Consensus 163 ~He~E~W----ta~f~~~~p--nlvytGgDD~~l~~~D~R~p~~~i------------~~n~kvH~~GV~SI~ss~~~~~ 224 (339)
T KOG0280|consen 163 VHEFEAW----TAKFSDKEP--NLVYTGGDDGSLSCWDIRIPKTFI------------WHNSKVHTSGVVSIYSSPPKPT 224 (339)
T ss_pred ccceeee----eeecccCCC--ceEEecCCCceEEEEEecCCccee------------eecceeeecceEEEecCCCCCc
Confidence 5543222 134544322 357899999999999999543221 4556678888888877643
Q ss_pred ceEEEEcCCcEEEEECCCCceE
Q 046773 306 ESAVACTSSRVITFDLRNQGMV 327 (453)
Q Consensus 306 ~~~vas~d~tIrlWDl~t~~~~ 327 (453)
-+++++.|..|++||.++.+..
T Consensus 225 ~I~TGsYDe~i~~~DtRnm~kP 246 (339)
T KOG0280|consen 225 YIATGSYDECIRVLDTRNMGKP 246 (339)
T ss_pred eEEEeccccceeeeehhcccCc
Confidence 4677788899999999965443
No 281
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=97.51 E-value=8.5e-05 Score=73.13 Aligned_cols=55 Identities=22% Similarity=0.424 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHH-hhhhhhHhHhhhhhHHhhcccchhccCCchhHHHhhhhccCC
Q 046773 46 VEALAAQVAIEAS-RSVGRLAAAAALANVFQVCSTWRAVSRSDLLWHRLTRRIWGR 100 (453)
Q Consensus 46 ~~~l~~~~~~~~~-~~~~~~~~~~~l~~~aqv~~~W~~l~~~~~~w~~~~~~~~~~ 100 (453)
|+-||.|+.+.|+ ..+..+++-.+|.+++.||++|+..++++.+|+..|...|.+
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~ 162 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQR 162 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHH
Confidence 4779999999999 666668899999999999999999999999999999998844
No 282
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=97.44 E-value=6.7e-05 Score=51.37 Aligned_cols=40 Identities=20% Similarity=0.407 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhhhhhhHhHhhhhhHHhhcccchhccCCchhHHH
Q 046773 49 LAAQVAIEASRSVGRLAAAAALANVFQVCSTWRAVSRSDLLWHR 92 (453)
Q Consensus 49 l~~~~~~~~~~~~~~~~~~~~l~~~aqv~~~W~~l~~~~~~w~~ 92 (453)
||.|+..+|+.+++ .++++++.+||+.|+.+.+++.+|+.
T Consensus 1 lP~~ll~~I~~~l~----~~d~~~~~~vc~~~~~~~~~~~~~~~ 40 (41)
T smart00256 1 LPDEILEEILSKLP----PKDLLRLRKVSRRWRSLIDSHDFWFK 40 (41)
T ss_pred CCHHHHHHHHHcCC----HHHHHHHHHHHHHHHHHhcChhhhhc
Confidence 68999999999987 67999999999999999999999964
No 283
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.38 E-value=0.0001 Score=80.39 Aligned_cols=186 Identities=12% Similarity=0.130 Sum_probs=113.0
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE--cCCeEEE-EeCCC-CEEEEEee
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIF-ATLDG-DIHVAVID 220 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~Las-gS~D~-tIkvWd~~ 220 (453)
.+|++|++ +.|+.|+..|.||++++.+|........|.. +|.-|.+ ||+.+.+ .+... -..+|+..
T Consensus 1104 fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~S--------avT~vePs~dgs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1104 FTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQS--------AVTLVEPSVDGSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred eeeEEeecCCceEEeeeccceEEEEEccCcccccccccccc--------ccccccccCCcceeeeeccccCchHHHhccc
Confidence 79999996 6999999999999999999998777776643 4555655 4665444 44444 35789987
Q ss_pred cCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeecccee
Q 046773 221 DVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVG 298 (453)
Q Consensus 221 ~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~ 298 (453)
..+ .|+++. ...|-|+...+. -+.|.....+.|+|++|+..+..- +++. + +..-.-|
T Consensus 1176 s~~~~~Hsf~e--------d~~vkFsn~~q~---r~~gt~~d~a~~YDvqT~~~l~ty-lt~~--------~-~~~y~~n 1234 (1516)
T KOG1832|consen 1176 STGGPRHSFDE--------DKAVKFSNSLQF---RALGTEADDALLYDVQTCSPLQTY-LTDT--------V-TSSYSNN 1234 (1516)
T ss_pred cccCccccccc--------cceeehhhhHHH---HHhcccccceEEEecccCcHHHHh-cCcc--------h-hhhhhcc
Confidence 643 233322 224677766443 123444456789999998721100 0000 0 1111225
Q ss_pred EEEEcCCceEEEEcCCcEEEEECCCCceEEEE-eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEE
Q 046773 299 RVRVTSHESAVACTSSRVITFDLRNQGMVLGE-RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVC 377 (453)
Q Consensus 299 ~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~~-~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~ 377 (453)
++.|+|...++- .|+ -|||++..+.++.+ +.. -..--.|.|+|+.++. +-.|||+.|...++
T Consensus 1235 ~a~FsP~D~LIl-ndG--vLWDvR~~~aIh~FD~ft--~~~~G~FHP~g~eVII------------NSEIwD~RTF~lLh 1297 (1516)
T KOG1832|consen 1235 LAHFSPCDTLIL-NDG--VLWDVRIPEAIHRFDQFT--DYGGGGFHPSGNEVII------------NSEIWDMRTFKLLH 1297 (1516)
T ss_pred ccccCCCcceEe-eCc--eeeeeccHHHHhhhhhhe--ecccccccCCCceEEe------------echhhhhHHHHHHh
Confidence 677888665443 222 59999987766654 111 0011347888887765 33699998875444
Q ss_pred E
Q 046773 378 R 378 (453)
Q Consensus 378 ~ 378 (453)
.
T Consensus 1298 ~ 1298 (1516)
T KOG1832|consen 1298 S 1298 (1516)
T ss_pred c
Confidence 3
No 284
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.32 E-value=0.052 Score=52.76 Aligned_cols=196 Identities=14% Similarity=0.051 Sum_probs=108.7
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCCcceEEeeecce
Q 046773 155 LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVANETRTAHFGSV 234 (453)
Q Consensus 155 ~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g~~~~~~~~~~v 234 (453)
.+||.|+.-+..++|...|.+-..-+-.-+.. + ..-+...+..-..+.-+|.|.|+|+-+++. +..-...|-..+
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn--~--v~~~~r~cd~~~~~~i~sndht~k~~~~~~-~s~~~~~h~~~~ 159 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNN--D--VTLVKRYCDLKFPLNIASNDHTGKTMVVSG-DSNKFAVHNQNL 159 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeeccccc--c--hhhhhhhcccccceeeccCCcceeEEEEec-Ccccceeecccc
Confidence 48999999999999999987643222111100 0 001122232333466689999999999986 433444454332
Q ss_pred ecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCC-c-EEecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEE
Q 046773 235 MDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAE-E-VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVA 310 (453)
Q Consensus 235 ~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg-~-~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~va 310 (453)
. ...++.++|++| +++-+.-..|-.+.+... + .... .+..-++.--++.|+.+. .+++
T Consensus 160 ~--~ns~~~snd~~~---~~~Vgds~~Vf~y~id~~sey~~~~-------------~~a~t~D~gF~~S~s~~~~~FAv~ 221 (344)
T KOG4532|consen 160 T--QNSLHYSNDPSW---GSSVGDSRRVFRYAIDDESEYIENI-------------YEAPTSDHGFYNSFSENDLQFAVV 221 (344)
T ss_pred c--eeeeEEcCCCce---EEEecCCCcceEEEeCCccceeeee-------------EecccCCCceeeeeccCcceEEEE
Confidence 2 224789999998 556666666777777653 3 2110 011111222345566443 4777
Q ss_pred EcCCcEEEEECCCCceEEEE----ee-ccCCeEEEEEEecCC--EEEEEeCCCccccCcceEEEEEcCCCeeEEEEE
Q 046773 311 CTSSRVITFDLRNQGMVLGE----RG-YGRGLYVTSVDVNAE--AYIVVENRELENQNRRLAIVRRVDTFEEVCRFS 380 (453)
Q Consensus 311 s~d~tIrlWDl~t~~~~~~~----~g-~~~~~~v~~~~~~g~--~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~ 380 (453)
+-|+++.|||++..+.++.+ +. |.....+.-|++-|- .|...-.-+ -+.|-|..++...+.+.
T Consensus 222 ~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs-------~~hv~D~R~~~~~q~I~ 291 (344)
T KOG4532|consen 222 FQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFS-------RVHVVDTRNYVNHQVIV 291 (344)
T ss_pred ecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcc-------eEEEEEcccCceeeEEe
Confidence 88999999999987665543 22 333334444554332 222211112 45566666665544443
No 285
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.31 E-value=0.23 Score=50.09 Aligned_cols=216 Identities=15% Similarity=0.101 Sum_probs=118.6
Q ss_pred CCCEEEEEeec-CC-cceEEeeecceecCceEEEEeCCCceeeEEEEee---CCCeEEEeeCC--CCc-EEecccccCCc
Q 046773 211 DGDIHVAVIDD-VA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGL---AGRAFHIWDRQ--AEE-VFVGGDLTDHN 282 (453)
Q Consensus 211 D~tIkvWd~~~-~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS---~D~tIrvWD~~--tg~-~~~g~~l~~~~ 282 (453)
++-|.+|++++ .| +....... ...+..-|+|+|+++. |+++- .++.|--+.++ +|+ ++..+.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~--~~~nptyl~~~~~~~~---LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~----- 84 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVA--ELGNPTYLAVNPDQRH---LYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ----- 84 (346)
T ss_pred CCceEEEEEeCcccccchhhhcc--ccCCCceEEECCCCCE---EEEEEecCCcCcEEEEEEcCCCCeEEEeecc-----
Confidence 35589999885 23 21111110 0112224899999986 66654 35666665554 477 443211
Q ss_pred ceeeeeeeeeeccceeEEEEcCCceE--EEEc-CCcEEEEECCCCceEEE---EeeccCC----------eEEEEEEecC
Q 046773 283 TVMGWRMLTEFTEFVGRVRVTSHESA--VACT-SSRVITFDLRNQGMVLG---ERGYGRG----------LYVTSVDVNA 346 (453)
Q Consensus 283 ~v~~w~~l~~h~~~v~~v~~s~~~~~--vas~-d~tIrlWDl~t~~~~~~---~~g~~~~----------~~v~~~~~~g 346 (453)
++.++ +-..|++++++.+ +|.- .+.|.+.=++..+.+.. ..-|... .-..-++|++
T Consensus 85 ------~~~g~--~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~ 156 (346)
T COG2706 85 ------TLPGS--PPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG 156 (346)
T ss_pred ------ccCCC--CCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC
Confidence 12222 2266888887744 4433 37899888865332211 1111111 1124578888
Q ss_pred CEEEEEeCCCccccCcceEEEEEcCCCee--EEEEEec-CCCeeEEEEeeCCCeEEEEeC--CeEEEEECCC--C--eEE
Q 046773 347 EAYIVVENRELENQNRRLAIVRRVDTFEE--VCRFSLR-ADRNVNVMGCMNQGYALMCVE--GVIRVWEVEG--G--EYM 417 (453)
Q Consensus 347 ~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~--v~~l~~~-~~~v~~~~~~~~~~~lls~s~--~tIrlWD~~t--G--~~l 417 (453)
+.+++..... | -|.+++++.|.. .....+. ..+-|.++|+|++++.-.... ++|-+|+... | ++|
T Consensus 157 ~~l~v~DLG~-----D-ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~l 230 (346)
T COG2706 157 RYLVVPDLGT-----D-RIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEEL 230 (346)
T ss_pred CEEEEeecCC-----c-eEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEe
Confidence 8877765433 2 567788876532 1111112 244688999999998766665 9999998887 3 334
Q ss_pred EEe---cc-cCCceEE----EEecCCCEEEEE--eCCcEEEEec
Q 046773 418 YSF---RE-RIGEEVI----AFVGDDRHVAAS--CGTNIHLWDF 451 (453)
Q Consensus 418 ~tL---~g-h~~~~V~----a~s~d~~~lasg--~D~~IklWDl 451 (453)
+++ +. -++. .+ .+++||++|..+ ....|-++.+
T Consensus 231 Q~i~tlP~dF~g~-~~~aaIhis~dGrFLYasNRg~dsI~~f~V 273 (346)
T COG2706 231 QTIDTLPEDFTGT-NWAAAIHISPDGRFLYASNRGHDSIAVFSV 273 (346)
T ss_pred eeeccCccccCCC-CceeEEEECCCCCEEEEecCCCCeEEEEEE
Confidence 433 21 1222 22 467999999655 3445555543
No 286
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.26 E-value=0.21 Score=52.55 Aligned_cols=191 Identities=8% Similarity=0.030 Sum_probs=101.7
Q ss_pred EEEcCCe-EEEEeCCC---CEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcE
Q 046773 198 IIITDSQ-LIFATLDG---DIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEV 272 (453)
Q Consensus 198 i~f~g~~-LasgS~D~---tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~ 272 (453)
.++||+. ++..|.++ .|.++|+.+ | ...+....+.. ...+|+|||+.++...+-..+..|-+.|+++++.
T Consensus 195 wSpDG~~~i~y~s~~~~~~~Iyv~dl~t-g~~~~lt~~~g~~----~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~ 269 (419)
T PRK04043 195 WANKEQTAFYYTSYGERKPTLYKYNLYT-GKKEKIASSQGML----VVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL 269 (419)
T ss_pred ECCCCCcEEEEEEccCCCCEEEEEECCC-CcEEEEecCCCcE----EeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE
Confidence 4566774 66666652 366667766 4 22222211111 1367999998753322222335577778888762
Q ss_pred EecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEEEcC-C--cEEEEECCCCceEEEEeeccCCeEEEEEEecCC
Q 046773 273 FVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVACTS-S--RVITFDLRNQGMVLGERGYGRGLYVTSVDVNAE 347 (453)
Q Consensus 273 ~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~vas~d-~--tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~ 347 (453)
-. |+.+......-.|+|++. +..++. + .|-+.|+.+++.. +....+.. ...++|+|+
T Consensus 270 ~~---------------LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~-rlt~~g~~--~~~~SPDG~ 331 (419)
T PRK04043 270 TQ---------------ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE-QVVFHGKN--NSSVSTYKN 331 (419)
T ss_pred EE---------------cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE-eCccCCCc--CceECCCCC
Confidence 11 111111112235788763 333432 2 5888899887652 22111211 247899999
Q ss_pred EEEEEeCCCccc--cCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC----CeEEEEECCC
Q 046773 348 AYIVVENRELEN--QNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE----GVIRVWEVEG 413 (453)
Q Consensus 348 ~l~s~s~dg~~~--~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~----~tIrlWD~~t 413 (453)
.++-.+.....+ .+...+.+-++++++. ..++... ......++|||+.++..+. ..+.+.++..
T Consensus 332 ~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 332 YIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTANG-VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred EEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCCC-CcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 987766543111 0112455667777653 4444332 1224678999998875543 3456666643
No 287
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.17 E-value=0.25 Score=47.47 Aligned_cols=189 Identities=14% Similarity=0.077 Sum_probs=101.9
Q ss_pred EEEeC-CCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEc-CCceEEEEcCCcEEE
Q 046773 241 IDFTG-CSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVT-SHESAVACTSSRVIT 318 (453)
Q Consensus 241 v~Fs~-dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s-~~~~~vas~d~tIrl 318 (453)
+.|.+ +|.+ +++--..+.|..||..+++... ..... ...+.+. +++.+..+....+.+
T Consensus 5 p~~d~~~g~l---~~~D~~~~~i~~~~~~~~~~~~----------------~~~~~-~~G~~~~~~~g~l~v~~~~~~~~ 64 (246)
T PF08450_consen 5 PVWDPRDGRL---YWVDIPGGRIYRVDPDTGEVEV----------------IDLPG-PNGMAFDRPDGRLYVADSGGIAV 64 (246)
T ss_dssp EEEETTTTEE---EEEETTTTEEEEEETTTTEEEE----------------EESSS-EEEEEEECTTSEEEEEETTCEEE
T ss_pred eEEECCCCEE---EEEEcCCCEEEEEECCCCeEEE----------------EecCC-CceEEEEccCCEEEEEEcCceEE
Confidence 45666 4543 4565567899999999887321 01112 3445565 667766666677777
Q ss_pred EECCCCceEEEEe---eccCCeEE--EEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEee
Q 046773 319 FDLRNQGMVLGER---GYGRGLYV--TSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCM 393 (453)
Q Consensus 319 WDl~t~~~~~~~~---g~~~~~~v--~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~ 393 (453)
.|+.+++...... +....... .+++++|+.+++-+...... ....-+||.++....+..+...-.....+++++
T Consensus 65 ~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~-~~~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~ 143 (246)
T PF08450_consen 65 VDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGAS-GIDPGSVYRIDPDGKVTVVADGLGFPNGIAFSP 143 (246)
T ss_dssp EETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTT-CGGSEEEEEEETTSEEEEEEEEESSEEEEEEET
T ss_pred EecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccc-cccccceEEECCCCeEEEEecCcccccceEECC
Confidence 7999975432221 11123333 45677788777655443111 100145655444322222221222345788999
Q ss_pred CCCeEEEEeC--CeEEEEECCC-Ce------EEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEec
Q 046773 394 NQGYALMCVE--GVIRVWEVEG-GE------YMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 394 ~~~~lls~s~--~tIrlWD~~t-G~------~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl 451 (453)
+++.+..+.. +.|..+|+.. +. .+..+.+-.+. .. ++..+|++.++. ..+.|.++|-
T Consensus 144 dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~-pDG~~vD~~G~l~va~~~~~~I~~~~p 212 (246)
T PF08450_consen 144 DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGY-PDGLAVDSDGNLWVADWGGGRIVVFDP 212 (246)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCE-EEEEEEBTTS-EEEEEETTTEEEEEET
T ss_pred cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcC-CCcceEcCCCCEEEEEcCCCEEEEECC
Confidence 9888775544 8888888853 22 12233322222 22 566788877766 6677777663
No 288
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.12 E-value=0.0015 Score=64.99 Aligned_cols=121 Identities=14% Similarity=0.228 Sum_probs=78.6
Q ss_pred EEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeee-eeeeeccceeEEE---EcCCceEEEEcCCcE
Q 046773 241 IDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWR-MLTEFTEFVGRVR---VTSHESAVACTSSRV 316 (453)
Q Consensus 241 v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~-~l~~h~~~v~~v~---~s~~~~~vas~d~tI 316 (453)
+.|...+. .|+.|-..+.|-+-|++.+.. | .+|. +---|.+.|.+++ |+..-+++++.+++|
T Consensus 258 lQf~~s~n---Lv~~GcRngeI~~iDLR~rnq--G---------~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gki 323 (425)
T KOG2695|consen 258 LQFAGSDN---LVFNGCRNGEIFVIDLRCRNQ--G---------NGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKI 323 (425)
T ss_pred HHhcccCC---eeEecccCCcEEEEEeeeccc--C---------CCcceEEEEcCcchhhhhhhccccceEeeccCcCce
Confidence 34554443 366788889999999987631 1 0111 1113456666665 455555666678999
Q ss_pred EEEECCCCce---EEEEeeccCCeEEEE--EEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEec
Q 046773 317 ITFDLRNQGM---VLGERGYGRGLYVTS--VDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLR 382 (453)
Q Consensus 317 rlWDl~t~~~---~~~~~g~~~~~~v~~--~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~ 382 (453)
+|||++.-+| +.+.+||.....-.- +.+....++++..|- -.|||.++.|..++++.+.
T Consensus 324 kLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDc-------ytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 324 KLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDC-------YTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred eEeeehhhhcccceeeeecccccccccccccccccceEEEccCee-------EEEEEecccCceeeccCCC
Confidence 9999998777 666678865433222 344445666666666 8899999999988887654
No 289
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.10 E-value=0.023 Score=56.78 Aligned_cols=223 Identities=14% Similarity=0.216 Sum_probs=119.9
Q ss_pred CCeEEEEeCCCCEEEEEeecCCc-ceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCC--c-EEeccc
Q 046773 202 DSQLIFATLDGDIHVAVIDDVAN-ETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAE--E-VFVGGD 277 (453)
Q Consensus 202 g~~LasgS~D~tIkvWd~~~~g~-~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg--~-~~~g~~ 277 (453)
...+++.|.|.|+|||--...|. -+-.-|... .....+.+.++.+. |+.|=..+++.=.-+.-- + ++
T Consensus 36 e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP--~~~~~~~y~~e~~~---L~vg~~ngtvtefs~sedfnkm~~---- 106 (404)
T KOG1409|consen 36 EEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMP--SPCSAMEYVSESRR---LYVGQDNGTVTEFALSEDFNKMTF---- 106 (404)
T ss_pred CCCeEEccccceeeeEEeccccccCchhhhhCC--CCceEeeeeccceE---EEEEEecceEEEEEhhhhhhhcch----
Confidence 45689999999999995433231 000001110 00112456666554 556655555544433221 0 11
Q ss_pred ccCCcceeeeeeeeeeccceeEEEEc-CCceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCC
Q 046773 278 LTDHNTVMGWRMLTEFTEFVGRVRVT-SHESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRE 356 (453)
Q Consensus 278 l~~~~~v~~w~~l~~h~~~v~~v~~s-~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg 356 (453)
.+.-..|..+|..+-|+ +.+.+++.+-++--.|--...++-+- ++.-....++..++-..-..+--.+
T Consensus 107 ---------~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg--~Y~~~~~~t~~~~d~~~~fvGd~~g 175 (404)
T KOG1409|consen 107 ---------LKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLG--GYNFETPASALQFDALYAFVGDHSG 175 (404)
T ss_pred ---------hhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCccc--ceEeeccCCCCceeeEEEEeccccc
Confidence 01224677788888887 44455555544444554322121110 0000000001111111111111122
Q ss_pred ccccCcceEEEE--EcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeE-EEEecccCCceEEEEe
Q 046773 357 LENQNRRLAIVR--RVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEY-MYSFRERIGEEVIAFV 432 (453)
Q Consensus 357 ~~~~~~~~i~Iw--~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~-l~tL~gh~~~~V~a~s 432 (453)
.+.+- ..+.-..+.++..|.+.+..+...+..+.+.+++. ..|-+||+--++. .+.+.||.+. |.+++
T Consensus 176 -------qvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~k-V~~l~ 247 (404)
T KOG1409|consen 176 -------QITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDK-VQALS 247 (404)
T ss_pred -------ceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhh-hhhhh
Confidence 22221 12233456777777787888888887788788877 8899999986543 4678899888 87554
Q ss_pred --cCCCEEEEE-eCCcEEEEecC
Q 046773 433 --GDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 433 --~d~~~lasg-~D~~IklWDl~ 452 (453)
+--++|.|. .|+.|-+||..
T Consensus 248 ~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 248 YAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred hhhhheeeeeccCCCeEEEEecc
Confidence 455678887 99999999975
No 290
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.08 E-value=0.012 Score=57.78 Aligned_cols=185 Identities=9% Similarity=0.031 Sum_probs=98.0
Q ss_pred EEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEc---CCceEEEEcCCcE
Q 046773 240 LIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVT---SHESAVACTSSRV 316 (453)
Q Consensus 240 ~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s---~~~~~vas~d~tI 316 (453)
.++|++-|.. ++++-.++.+.+=+.....+.. + ++++.|..+..-..|+ |+-+.++++|+.+
T Consensus 126 slD~~~~~~~---i~vs~s~G~~~~v~~t~~~le~---------v---q~wk~He~E~Wta~f~~~~pnlvytGgDD~~l 190 (339)
T KOG0280|consen 126 SLDISTSGTK---IFVSDSRGSISGVYETEMVLEK---------V---QTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSL 190 (339)
T ss_pred EEEeeccCce---EEEEcCCCcEEEEecceeeeee---------c---ccccccceeeeeeecccCCCceEEecCCCceE
Confidence 4677777764 5665566666633332222211 1 2345665555556665 5445777888999
Q ss_pred EEEECC-CCceEEEE-eeccCCeEEEEE---EecCCEEEEEeCCCccccCcceEEEEEcC-CCeeEEEEEecCCCeeEEE
Q 046773 317 ITFDLR-NQGMVLGE-RGYGRGLYVTSV---DVNAEAYIVVENRELENQNRRLAIVRRVD-TFEEVCRFSLRADRNVNVM 390 (453)
Q Consensus 317 rlWDl~-t~~~~~~~-~g~~~~~~v~~~---~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~-tg~~v~~l~~~~~~v~~~~ 390 (453)
+.||++ .+.++.+. +-|.. -|.++ .+.+..++++|.|. .|++||.. -++++..-... .+|-.+.
T Consensus 191 ~~~D~R~p~~~i~~n~kvH~~--GV~SI~ss~~~~~~I~TGsYDe-------~i~~~DtRnm~kPl~~~~v~-GGVWRi~ 260 (339)
T KOG0280|consen 191 SCWDIRIPKTFIWHNSKVHTS--GVVSIYSSPPKPTYIATGSYDE-------CIRVLDTRNMGKPLFKAKVG-GGVWRIK 260 (339)
T ss_pred EEEEecCCcceeeecceeeec--ceEEEecCCCCCceEEEecccc-------ceeeeehhcccCccccCccc-cceEEEE
Confidence 999999 44555442 33433 34554 35567999999999 99999987 35544322111 2233333
Q ss_pred EeeCC-CeEE-EEeCCeEEEEECCCC--e---EEEEecccCCceEE--EEecCCCEEEEE--eCCcEE-EEe
Q 046773 391 GCMNQ-GYAL-MCVEGVIRVWEVEGG--E---YMYSFRERIGEEVI--AFVGDDRHVAAS--CGTNIH-LWD 450 (453)
Q Consensus 391 ~~~~~-~~ll-s~s~~tIrlWD~~tG--~---~l~tL~gh~~~~V~--a~s~d~~~lasg--~D~~Ik-lWD 450 (453)
.+|.- ..++ +|=-+-.||=++..+ + .+...++|..- +. ....-.-.|||. +|+.|+ +|-
T Consensus 261 ~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl-~YG~DWd~~~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 261 HHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSL-CYGGDWDSKDSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred ecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccce-eeccccccccceeeeeeccccceeeeee
Confidence 33311 1111 121133445444432 3 33444555433 32 111111246663 899976 883
No 291
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.06 E-value=0.42 Score=48.18 Aligned_cols=193 Identities=13% Similarity=0.137 Sum_probs=110.5
Q ss_pred eEEEEeCCCceeeEEEEee-CCCeEEEeeCCC-CcEEe-----cccccCCcceeeeeeeeeeccceeEEEEcCCceEE-E
Q 046773 239 VLIDFTGCSRYWVGLYAGL-AGRAFHIWDRQA-EEVFV-----GGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAV-A 310 (453)
Q Consensus 239 ~~v~Fs~dg~~~~~LaSgS-~D~tIrvWD~~t-g~~~~-----g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~v-a 310 (453)
+.|+++++|++ |++++ .-+.|.+.-++. |.+.. -|.-..| | -+.-+..+-.+.|+|++..+ +
T Consensus 92 ~yvsvd~~g~~---vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p------~-~rQ~~~h~H~a~~tP~~~~l~v 161 (346)
T COG2706 92 CYVSVDEDGRF---VFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGP------H-ERQESPHVHSANFTPDGRYLVV 161 (346)
T ss_pred eEEEECCCCCE---EEEEEccCceEEEEEcccCCccccceeeeecCCCCC------C-ccccCCccceeeeCCCCCEEEE
Confidence 35899999997 66665 347899998865 55210 0110001 0 01112236677899988544 4
Q ss_pred EcC--CcEEEEECCCCceEEEE-----eeccCCeEEEEEEecCCEE-EEEeCCCccccCcceEEEEEcCCC----eeEEE
Q 046773 311 CTS--SRVITFDLRNQGMVLGE-----RGYGRGLYVTSVDVNAEAY-IVVENRELENQNRRLAIVRRVDTF----EEVCR 378 (453)
Q Consensus 311 s~d--~tIrlWDl~t~~~~~~~-----~g~~~~~~v~~~~~~g~~l-~s~s~dg~~~~~~~~i~Iw~~~tg----~~v~~ 378 (453)
++= +.|.++|++.|...... .|-+.. =..|.|+++.. +..-.++ +|-+|..+.. +++++
T Consensus 162 ~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPR--Hi~FHpn~k~aY~v~EL~s-------tV~v~~y~~~~g~~~~lQ~ 232 (346)
T COG2706 162 PDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPR--HIVFHPNGKYAYLVNELNS-------TVDVLEYNPAVGKFEELQT 232 (346)
T ss_pred eecCCceEEEEEcccCccccccccccCCCCCcc--eEEEcCCCcEEEEEeccCC-------EEEEEEEcCCCceEEEeee
Confidence 442 57999999977543221 122211 25688888764 3334555 9999988763 34444
Q ss_pred EEecC------CCeeEEEEeeCCCeEEEEeC--CeEEEEECC--CCeEEEEeccc-CCc---eEEEEecCCCEEEEE--e
Q 046773 379 FSLRA------DRNVNVMGCMNQGYALMCVE--GVIRVWEVE--GGEYMYSFRER-IGE---EVIAFVGDDRHVAAS--C 442 (453)
Q Consensus 379 l~~~~------~~v~~~~~~~~~~~lls~s~--~tIrlWD~~--tG~~l~tL~gh-~~~---~V~a~s~d~~~lasg--~ 442 (453)
+..-| .+.-.+..+++|++|.++.- ..|-+.-+. +|+ |..+.-. ++. +=..|.+++++|+.+ .
T Consensus 233 i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~-L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~ 311 (346)
T COG2706 233 IDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGK-LELVGITPTEGQFPRDFNINPSGRFLIAANQK 311 (346)
T ss_pred eccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCE-EEEEEEeccCCcCCccceeCCCCCEEEEEccC
Confidence 32222 33445677889998877654 666666554 444 3332211 122 112677999988766 4
Q ss_pred CCcEEEEec
Q 046773 443 GTNIHLWDF 451 (453)
Q Consensus 443 D~~IklWDl 451 (453)
+.+|.++.+
T Consensus 312 sd~i~vf~~ 320 (346)
T COG2706 312 SDNITVFER 320 (346)
T ss_pred CCcEEEEEE
Confidence 456888754
No 292
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.06 E-value=0.00035 Score=76.45 Aligned_cols=186 Identities=12% Similarity=0.144 Sum_probs=111.5
Q ss_pred eEEEEEEcC--CeEEEEeCCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCC-eEEEeeCC
Q 046773 194 AVSGIIITD--SQLIFATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGR-AFHIWDRQ 268 (453)
Q Consensus 194 ~V~~i~f~g--~~LasgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~-tIrvWD~~ 268 (453)
...+++|++ +.|+-|+.-|.||+.++.+ | ......|...+. .|.-+-||.. +|-|.+... -..+|++.
T Consensus 1103 ~fTc~afs~~~~hL~vG~~~Geik~~nv~s-G~~e~s~ncH~SavT----~vePs~dgs~--~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1103 LFTCIAFSGGTNHLAVGSHAGEIKIFNVSS-GSMEESVNCHQSAVT----LVEPSVDGST--QLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred ceeeEEeecCCceEEeeeccceEEEEEccC-ccccccccccccccc----cccccCCcce--eeeeccccCchHHHhccc
Confidence 456788874 5799999999999999988 5 222333433322 2556667765 355555444 45799986
Q ss_pred C-CcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEE-Ee---eccCCeEEEE
Q 046773 269 A-EEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLG-ER---GYGRGLYVTS 341 (453)
Q Consensus 269 t-g~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~-~~---g~~~~~~v~~ 341 (453)
+ +.. - |++ ....+|.|+... .++++-.+.+.|+|++|+..+.+ +. +.........
T Consensus 1176 s~~~~--~------------Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~ 1237 (1516)
T KOG1832|consen 1176 STGGP--R------------HSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAH 1237 (1516)
T ss_pred cccCc--c------------ccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccc
Confidence 5 110 0 111 234568887643 35655556788999999865554 22 2222223345
Q ss_pred EEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeCCeEEEEECCCCeEEEEec
Q 046773 342 VDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYMYSFR 421 (453)
Q Consensus 342 ~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~~tIrlWD~~tG~~l~tL~ 421 (453)
|+|+.+.+. .|| -+||+...+.++.|.--.. --.-.|+|++..++.- -.|||+.|-+.|++.+
T Consensus 1238 FsP~D~LIl---ndG---------vLWDvR~~~aIh~FD~ft~-~~~G~FHP~g~eVIIN----SEIwD~RTF~lLh~VP 1300 (1516)
T KOG1832|consen 1238 FSPCDTLIL---NDG---------VLWDVRIPEAIHRFDQFTD-YGGGGFHPSGNEVIIN----SEIWDMRTFKLLHSVP 1300 (1516)
T ss_pred cCCCcceEe---eCc---------eeeeeccHHHHhhhhhhee-cccccccCCCceEEee----chhhhhHHHHHHhcCc
Confidence 677665443 455 6899988877766531111 1122466776665532 2689999877666543
No 293
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=97.04 E-value=0.023 Score=56.28 Aligned_cols=188 Identities=13% Similarity=0.089 Sum_probs=109.8
Q ss_pred EEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc-eEEE-EcCCcEEE
Q 046773 241 IDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE-SAVA-CTSSRVIT 318 (453)
Q Consensus 241 v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~-~~va-s~d~tIrl 318 (453)
-+|++|+.. +|.+-..+.|.|+.....+... ..|+|..|...|+.|..+|.. .++. +.|..-.|
T Consensus 16 hAwn~drt~---iAv~~~~~evhiy~~~~~~~w~-----------~~htls~Hd~~vtgvdWap~snrIvtcs~drnayV 81 (361)
T KOG1523|consen 16 HAWNSDRTQ---IAVSPNNHEVHIYSMLGADLWE-----------PAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYV 81 (361)
T ss_pred eeecCCCce---EEeccCCceEEEEEecCCCCce-----------eceehhhhCcceeEEeecCCCCceeEccCCCCccc
Confidence 367777664 5666666788898876655211 126788999999999998765 4444 55778999
Q ss_pred EECCCCceE---EEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCee--EEEE--EecCCCeeEEEE
Q 046773 319 FDLRNQGMV---LGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEE--VCRF--SLRADRNVNVMG 391 (453)
Q Consensus 319 WDl~t~~~~---~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~--v~~l--~~~~~~v~~~~~ 391 (453)
|-...++.- +.+.-+..+......+|..++++++|... .|.||-.+.... +... ....+.|.++..
T Consensus 82 w~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar-------~isVcy~E~ENdWWVsKhikkPirStv~sldW 154 (361)
T KOG1523|consen 82 WTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGAR-------LISVCYYEQENDWWVSKHIKKPIRSTVTSLDW 154 (361)
T ss_pred cccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCcc-------EEEEEEEecccceehhhhhCCccccceeeeec
Confidence 998544321 11112233333444578889999999888 888885442110 0000 001122344444
Q ss_pred eeCCCeEEEEeC-CeEEEE----------------ECCC--CeEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEE
Q 046773 392 CMNQGYALMCVE-GVIRVW----------------EVEG--GEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLW 449 (453)
Q Consensus 392 ~~~~~~lls~s~-~tIrlW----------------D~~t--G~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklW 449 (453)
+|+.-.+++++. +..||. +-+. |+.+..+..--++ |. .|+|+|.+|+=. .|.+|.+=
T Consensus 155 hpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggw-vh~v~fs~sG~~lawv~Hds~v~~~ 233 (361)
T KOG1523|consen 155 HPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGW-VHGVLFSPSGNRLAWVGHDSTVSFV 233 (361)
T ss_pred cCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCc-eeeeEeCCCCCEeeEecCCCceEEe
Confidence 455444444442 444444 2221 3444444322344 76 788999999866 88888775
Q ss_pred e
Q 046773 450 D 450 (453)
Q Consensus 450 D 450 (453)
|
T Consensus 234 d 234 (361)
T KOG1523|consen 234 D 234 (361)
T ss_pred e
Confidence 5
No 294
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=96.76 E-value=0.06 Score=55.94 Aligned_cols=138 Identities=12% Similarity=0.059 Sum_probs=82.9
Q ss_pred eeccceeEEEEc--CCceEEEEcCC-cEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEE
Q 046773 292 EFTEFVGRVRVT--SHESAVACTSS-RVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVR 368 (453)
Q Consensus 292 ~h~~~v~~v~~s--~~~~~vas~d~-tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw 368 (453)
++...|.-.++. +...+++..|+ .+-++|.++++.-..+.+ -..+....++++|..++.+.... .+-+-
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~-lg~I~av~vs~dGK~~vvaNdr~-------el~vi 428 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKD-LGNIEAVKVSPDGKKVVVANDRF-------ELWVI 428 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCC-ccceEEEEEcCCCcEEEEEcCce-------EEEEE
Confidence 444445544554 55677777775 799999999764333322 22344456788888777766555 55555
Q ss_pred EcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEE--eC---CeEEEEECCCCeEEEEecccCCce-EEEEecCCCEE
Q 046773 369 RVDTFEEVCRFSLRADRNVNVMGCMNQGYALMC--VE---GVIRVWEVEGGEYMYSFRERIGEE-VIAFVGDDRHV 438 (453)
Q Consensus 369 ~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~--s~---~tIrlWD~~tG~~l~tL~gh~~~~-V~a~s~d~~~l 438 (453)
|+++|.....=+.....+....+++++++++-+ ++ ..|||.|+.+++....-. .++.- --||.||+++|
T Consensus 429 didngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryL 503 (668)
T COG4946 429 DIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYL 503 (668)
T ss_pred EecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEE
Confidence 777875322111122335566777777776643 22 789999999988643221 11110 12788899976
No 295
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=96.60 E-value=0.0088 Score=59.74 Aligned_cols=142 Identities=9% Similarity=0.092 Sum_probs=95.9
Q ss_pred EeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcC-Cce-EEEEcCCcEEEEECCCC-----ceE
Q 046773 255 AGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTS-HES-AVACTSSRVITFDLRNQ-----GMV 327 (453)
Q Consensus 255 SgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~-~~~-~vas~d~tIrlWDl~t~-----~~~ 327 (453)
|.+-+.-|-|=|++||-.- .+ .-.+-|-+.+|.. +.+ +-+|-.+.|-..||+.+ .|.
T Consensus 229 s~G~sqqv~L~nvetg~~q---------------sf-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a 292 (425)
T KOG2695|consen 229 SVGLSQQVLLTNVETGHQQ---------------SF-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA 292 (425)
T ss_pred cccccceeEEEEeeccccc---------------cc-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce
Confidence 3445666778888887511 01 1124466667764 334 44567789999999875 233
Q ss_pred EEEeeccCCeEEEE---EEecCCEEEEEeCCCccccCcceEEEEEcCCCee---EEEEEecCCCeeEEEEe--eCCCeEE
Q 046773 328 LGERGYGRGLYVTS---VDVNAEAYIVVENRELENQNRRLAIVRRVDTFEE---VCRFSLRADRNVNVMGC--MNQGYAL 399 (453)
Q Consensus 328 ~~~~g~~~~~~v~~---~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~---v~~l~~~~~~v~~~~~~--~~~~~ll 399 (453)
+++ .| ...|++ +.+++..|++.+.+| +|++||..--+| +++..+|-+....+-++ +..+.++
T Consensus 293 ~rl-yh--~Ssvtslq~Lq~s~q~LmaS~M~g-------kikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~ 362 (425)
T KOG2695|consen 293 QRL-YH--DSSVTSLQILQFSQQKLMASDMTG-------KIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIF 362 (425)
T ss_pred EEE-Ec--CcchhhhhhhccccceEeeccCcC-------ceeEeeehhhhcccceeeeecccccccccccccccccceEE
Confidence 332 23 345566 467888999889999 999999886566 88888876554444333 3456677
Q ss_pred EEeC-CeEEEEECCCCeEEEEecc
Q 046773 400 MCVE-GVIRVWEVEGGEYMYSFRE 422 (453)
Q Consensus 400 s~s~-~tIrlWD~~tG~~l~tL~g 422 (453)
++++ .-.|||.+.+|..+.+++-
T Consensus 363 s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 363 SVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred EccCeeEEEEEecccCceeeccCC
Confidence 7666 8999999999999999864
No 296
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=96.54 E-value=1.2 Score=46.75 Aligned_cols=189 Identities=11% Similarity=0.094 Sum_probs=109.0
Q ss_pred EeCCCceeeEEEEeeCCCeEEEeeCCCCc--EEecc-ccc-CCcceeeeeeeeeecccee---EEEEcCCceEEEEcCCc
Q 046773 243 FTGCSRYWVGLYAGLAGRAFHIWDRQAEE--VFVGG-DLT-DHNTVMGWRMLTEFTEFVG---RVRVTSHESAVACTSSR 315 (453)
Q Consensus 243 Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~--~~~g~-~l~-~~~~v~~w~~l~~h~~~v~---~v~~s~~~~~vas~d~t 315 (453)
.+.||+.+ ++ +..+.|-++|.++.. .+.-+ .+. .+. +.....++- ..++.+...++--+.+.
T Consensus 274 ~nsDGkrI--vF--q~~GdIylydP~td~lekldI~lpl~rk~k-------~~k~~~pskyledfa~~~Gd~ia~VSRGk 342 (668)
T COG4946 274 ANSDGKRI--VF--QNAGDIYLYDPETDSLEKLDIGLPLDRKKK-------QPKFVNPSKYLEDFAVVNGDYIALVSRGK 342 (668)
T ss_pred cCCCCcEE--EE--ecCCcEEEeCCCcCcceeeecCCccccccc-------cccccCHHHhhhhhccCCCcEEEEEecCc
Confidence 35667764 33 345679999998876 22211 111 010 011111111 11222333333334444
Q ss_pred EEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCC
Q 046773 316 VITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQ 395 (453)
Q Consensus 316 IrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~ 395 (453)
.-|-+...+-.+. .++...+.-..+..+++..+.+..||. .+-|.+.++++. ..+...-..+.++..+++|
T Consensus 343 aFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD------~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dG 413 (668)
T COG4946 343 AFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGD------KLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDG 413 (668)
T ss_pred EEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCc------eEEEEecCCceE-EEeeCCccceEEEEEcCCC
Confidence 4444433332222 244444555667777888999999881 567899988763 2232222447788888899
Q ss_pred CeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-e----CCcEEEEecC
Q 046773 396 GYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-C----GTNIHLWDFG 452 (453)
Q Consensus 396 ~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~----D~~IklWDl~ 452 (453)
++++.+.+ ..|-+-|+.+|.....=+.. ...|. .++|++++||-+ - -..|||+|..
T Consensus 414 K~~vvaNdr~el~vididngnv~~idkS~-~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~ 477 (668)
T COG4946 414 KKVVVANDRFELWVIDIDNGNVRLIDKSE-YGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMD 477 (668)
T ss_pred cEEEEEcCceEEEEEEecCCCeeEecccc-cceeEEEEEcCCceeEEEecCcceeeeeEEEEecC
Confidence 99888888 78888899999753322222 22366 567999999965 3 4588998863
No 297
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.30 E-value=0.85 Score=44.82 Aligned_cols=189 Identities=8% Similarity=0.071 Sum_probs=89.9
Q ss_pred EEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcC--------CceEEEE
Q 046773 240 LIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTS--------HESAVAC 311 (453)
Q Consensus 240 ~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~--------~~~~vas 311 (453)
.|+||||+.. ||.+..-++|+|+|+...++|.-- |. .. ........|..+.|-. .++++-.
T Consensus 48 kl~WSpD~tl---La~a~S~G~i~vfdl~g~~lf~I~----p~-~~---~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~ 116 (282)
T PF15492_consen 48 KLAWSPDCTL---LAYAESTGTIRVFDLMGSELFVIP----PA-MS---FPGDLSDAIAGLIFLEYKKSAQWSYELLVIN 116 (282)
T ss_pred EEEECCCCcE---EEEEcCCCeEEEEecccceeEEcC----cc-cc---cCCccccceeeeEeeccccccccceeEEEEe
Confidence 5899999985 777788899999999876655311 00 00 0011223444444421 1344545
Q ss_pred cCCcEEEEEC--CCC---ceEEEEe---eccCCeEEEEEEecCCEEEEEeCCCccccC----cceEEEEEcCCCeeEEEE
Q 046773 312 TSSRVITFDL--RNQ---GMVLGER---GYGRGLYVTSVDVNAEAYIVVENRELENQN----RRLAIVRRVDTFEEVCRF 379 (453)
Q Consensus 312 ~d~tIrlWDl--~t~---~~~~~~~---g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~----~~~i~Iw~~~tg~~v~~l 379 (453)
-++.+|-+=+ .|. +..+... .+.+++....+++..+.|++++....++.. ..=+.-|.+-.
T Consensus 117 Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~------- 189 (282)
T PF15492_consen 117 YRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILS------- 189 (282)
T ss_pred ccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcC-------
Confidence 5555554433 221 2233321 234455444556666666555433210000 00122222211
Q ss_pred EecCCCeeEEEEeeCCCeEEEEeCCeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 380 SLRADRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 380 ~~~~~~v~~~~~~~~~~~lls~s~~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
..|.... +...+.. +.....+-.+|.+-+.+.......-.+. |. ++||||..||+- .+|.|-||++.
T Consensus 190 -~~Pyyk~--v~~~~~~--~~~~~~~~~~~~~~~~~~fs~~~~~~d~-i~kmSlSPdg~~La~ih~sG~lsLW~iP 259 (282)
T PF15492_consen 190 -DSPYYKQ--VTSSEDD--ITASSKRRGLLRIPSFKFFSRQGQEQDG-IFKMSLSPDGSLLACIHFSGSLSLWEIP 259 (282)
T ss_pred -CCCcEEE--ccccCcc--ccccccccceeeccceeeeeccccCCCc-eEEEEECCCCCEEEEEEcCCeEEEEecC
Confidence 1121100 0011111 1111123355555543332211112344 54 889999999998 99999999985
No 298
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.22 E-value=0.013 Score=36.81 Aligned_cols=36 Identities=28% Similarity=0.550 Sum_probs=29.4
Q ss_pred CeEEEEecccCCceEEEE--ecCCCEEEEE-eCCcEEEEe
Q 046773 414 GEYMYSFRERIGEEVIAF--VGDDRHVAAS-CGTNIHLWD 450 (453)
Q Consensus 414 G~~l~tL~gh~~~~V~a~--s~d~~~lasg-~D~~IklWD 450 (453)
++++..+..|... |+++ .+++..++++ .|+.|++||
T Consensus 2 ~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGP-VTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCc-eeEEEECCCCCEEEEecCCCeEEEcC
Confidence 5677888888887 8854 5677888888 999999997
No 299
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.15 E-value=0.077 Score=58.25 Aligned_cols=182 Identities=9% Similarity=0.033 Sum_probs=110.4
Q ss_pred eEEEEEEcCCeEEEEeCCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEE
Q 046773 194 AVSGIIITDSQLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVF 273 (453)
Q Consensus 194 ~V~~i~f~g~~LasgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~ 273 (453)
++++.++++..++.|+.++.+.+-+.+. -..+...|... +-+|.+ ++|+|.|++|-|--+-|.+..
T Consensus 41 ~is~~av~~~~~~~GtH~g~v~~~~~~~-~~~~~~~~s~~----------~~~Gey---~asCS~DGkv~I~sl~~~~~~ 106 (846)
T KOG2066|consen 41 AISCCAVHDKFFALGTHRGAVYLTTCQG-NPKTNFDHSSS----------ILEGEY---VASCSDDGKVVIGSLFTDDEI 106 (846)
T ss_pred HHHHHHhhcceeeeccccceEEEEecCC-ccccccccccc----------ccCCce---EEEecCCCcEEEeeccCCccc
Confidence 4455677889999999999888876553 11111111110 235665 889999999999887776621
Q ss_pred ecccccCCcceeeeeeeeeeccceeEEEEcCC------ceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCC
Q 046773 274 VGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSH------ESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAE 347 (453)
Q Consensus 274 ~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~------~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~ 347 (453)
. -....-++.+|+++|+ ..+++++...+-|..=.--+......+|.....|.++...|+
T Consensus 107 ~---------------~~df~rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~ 171 (846)
T KOG2066|consen 107 T---------------QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN 171 (846)
T ss_pred e---------------eEecCCcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEecCc
Confidence 1 0122357889999987 234544442255543111111111134555567899999999
Q ss_pred EEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEE-----EEeeCCCeEEEEeCCeEEEEECC
Q 046773 348 AYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNV-----MGCMNQGYALMCVEGVIRVWEVE 412 (453)
Q Consensus 348 ~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~-----~~~~~~~~lls~s~~tIrlWD~~ 412 (453)
.++=++.+| +||.|..+++.+..+......+|.- ..-.+...++.+=+.+|+|--+.
T Consensus 172 lIAWand~G--------v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 172 LIAWANDDG--------VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKICSIK 233 (846)
T ss_pred EEEEecCCC--------cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeEEEEEEe
Confidence 999888887 6899999887766554332223322 22234455665655778877776
No 300
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.12 E-value=1.1 Score=47.78 Aligned_cols=104 Identities=11% Similarity=0.166 Sum_probs=64.4
Q ss_pred EEecCCEEEEEeCCCccccCcceEEEEEcCC-C---eeEEEEEecCCCeeEEEEeeCCCeEEEEeC----CeEEEEECCC
Q 046773 342 VDVNAEAYIVVENRELENQNRRLAIVRRVDT-F---EEVCRFSLRADRNVNVMGCMNQGYALMCVE----GVIRVWEVEG 413 (453)
Q Consensus 342 ~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~t-g---~~v~~l~~~~~~v~~~~~~~~~~~lls~s~----~tIrlWD~~t 413 (453)
..|.|++.++.+... +..+++++-+++ + ..+..+.- ..-..+.++|.|++++.++- +++...|+.-
T Consensus 453 WEP~gdkF~vi~g~~----~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 453 WEPHGDKFAVISGNT----VKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred eccCCCeEEEEEccc----cccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence 357788887776654 234788887663 2 22222221 11346778899999886642 8999999985
Q ss_pred CeEEEEe-cccCCceEE-EEecCCCEEEEE-e------CCcEEEEecC
Q 046773 414 GEYMYSF-RERIGEEVI-AFVGDDRHVAAS-C------GTNIHLWDFG 452 (453)
Q Consensus 414 G~~l~tL-~gh~~~~V~-a~s~d~~~lasg-~------D~~IklWDl~ 452 (453)
..+..+- ..|... -. -..|.||+++++ + |..-+||+|+
T Consensus 527 a~~k~~~~~eh~~a-t~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 527 ADLKDTASPEHFAA-TEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred hhhhhccCcccccc-ccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence 4443332 223222 11 456999999875 3 7788888874
No 301
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.38 Score=49.29 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=33.8
Q ss_pred CeEEEEEEecC--C-EEEEEeCCCcEEEEECCCCeEEEEecCC
Q 046773 144 GLTCRCLTLSD--L-YLACGFADGAVRLFDLTTRLHVRTFRPQ 183 (453)
Q Consensus 144 ~v~v~~lafs~--~-~LaSGS~D~TIrlWD~~tg~~~~tl~gh 183 (453)
+..|..++||+ + +|..+|.+++|||-|++|..++.++..|
T Consensus 193 g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~ 235 (463)
T KOG1645|consen 193 GSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY 235 (463)
T ss_pred chhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc
Confidence 35588999997 3 6899999999999999999998887754
No 302
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=96.01 E-value=0.71 Score=45.14 Aligned_cols=177 Identities=12% Similarity=0.022 Sum_probs=96.5
Q ss_pred EEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeec---cceeEEEEcCCceEEEEcCCcEEEEECCCCceEE
Q 046773 252 GLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFT---EFVGRVRVTSHESAVACTSSRVITFDLRNQGMVL 328 (453)
Q Consensus 252 ~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~---~~v~~v~~s~~~~~vas~d~tIrlWDl~t~~~~~ 328 (453)
.||.|+.-+..++|...|.+.+. +.-..|. .-+...+...-.+.+++.|.|+|+.+++-+..-.
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~-------------~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~ 152 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHL-------------YQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKF 152 (344)
T ss_pred EEEeccccceeeeecccCcccce-------------eeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccc
Confidence 58888888999999999887221 0000010 1122223333457788889999999887542111
Q ss_pred EEeeccCCeEE--EEEEecCCEEEEEeCCCccccCcceEEEEEcCC-CeeEEEEEe--cCCCeeEEEEeeCCCeEEEEeC
Q 046773 329 GERGYGRGLYV--TSVDVNAEAYIVVENRELENQNRRLAIVRRVDT-FEEVCRFSL--RADRNVNVMGCMNQGYALMCVE 403 (453)
Q Consensus 329 ~~~g~~~~~~v--~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~t-g~~v~~l~~--~~~~v~~~~~~~~~~~lls~s~ 403 (453)
.-|.++..+ .++++++...+++.... .|-.+.++. ++.+..... ..+......++......+++.-
T Consensus 153 --~~h~~~~~~ns~~~snd~~~~~~Vgds~-------~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Q 223 (344)
T KOG4532|consen 153 --AVHNQNLTQNSLHYSNDPSWGSSVGDSR-------RVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQ 223 (344)
T ss_pred --eeeccccceeeeEEcCCCceEEEecCCC-------cceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEec
Confidence 123333223 44677777777776665 556666654 333333222 2233444555555555555554
Q ss_pred -CeEEEEECCCC-eEEEEe----cccCCceEE--EEecCCC---EEEEEeCCcEEEEec
Q 046773 404 -GVIRVWEVEGG-EYMYSF----RERIGEEVI--AFVGDDR---HVAASCGTNIHLWDF 451 (453)
Q Consensus 404 -~tIrlWD~~tG-~~l~tL----~gh~~~~V~--a~s~d~~---~lasg~D~~IklWDl 451 (453)
+++-|||+..- ....+. +.|.|. +. .|++-|. .+.|-.=+.+.|-|+
T Consensus 224 dg~~~I~DVR~~~tpm~~~sstrp~hnGa-~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~ 281 (344)
T KOG4532|consen 224 DGTCAIYDVRNMATPMAEISSTRPHHNGA-FRVCRFSLYGLLDLLFISEHFSRVHVVDT 281 (344)
T ss_pred CCcEEEEEecccccchhhhcccCCCCCCc-eEEEEecCCCcceEEEEecCcceEEEEEc
Confidence 99999999863 332222 335565 65 5675332 333323345555554
No 303
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.22 Score=51.58 Aligned_cols=245 Identities=9% Similarity=-0.022 Sum_probs=132.5
Q ss_pred EEEEEec-CCEEEEEeCCCcEEEEECCC--Ce-EEEEecCCCCCccccccceEEEEEEcCCeEEEEeC-CCCEEEEEeec
Q 046773 147 CRCLTLS-DLYLACGFADGAVRLFDLTT--RL-HVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATL-DGDIHVAVIDD 221 (453)
Q Consensus 147 v~~lafs-~~~LaSGS~D~TIrlWD~~t--g~-~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~-D~tIkvWd~~~ 221 (453)
|+-+..+ -+++.++|.|+.+|.|--.. |. -+.-++.|. ++... -+++.++....|.+. |..+|+.|++.
T Consensus 12 i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL----~~I~s--l~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 12 ITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHL----GVILS--LAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred eeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHH----HHHHh--hhccccceeEeeccCcccceeEEEeec
Confidence 4444444 47999999999999998643 22 122233332 21111 124567778888777 99999999876
Q ss_pred CC-cceEEeeecceecCceEEEEeCCCceeeEEEEee-CCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeE
Q 046773 222 VA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGL-AGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGR 299 (453)
Q Consensus 222 ~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS-~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~ 299 (453)
.. +...+.. .+ ...+.. +...|.-+..||.+. .++.|-|.|-...-+-.+ +.-.-|+++|-+
T Consensus 86 ~DminmiKL~--~l-Pg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~------------~fkklH~sPV~~ 149 (558)
T KOG0882|consen 86 FDMINMIKLV--DL-PGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDG------------YFKKLHFSPVKK 149 (558)
T ss_pred cchhhhcccc--cC-CCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccc------------eecccccCceEE
Confidence 22 1111110 00 000001 111121112244433 345677877654331111 112346789999
Q ss_pred EEEcCCceEEEEcC--CcEEEEECCC-CceEEE-----Eeecc---------CCeEEEEEEecCCEEEEEeCCCccccCc
Q 046773 300 VRVTSHESAVACTS--SRVITFDLRN-QGMVLG-----ERGYG---------RGLYVTSVDVNAEAYIVVENRELENQNR 362 (453)
Q Consensus 300 v~~s~~~~~vas~d--~tIrlWDl~t-~~~~~~-----~~g~~---------~~~~v~~~~~~g~~l~s~s~dg~~~~~~ 362 (453)
+++.+......|.| +.|.-|..+- -+.+.+ ....+ ......+|++++..+..-+.|.
T Consensus 150 i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Dr------ 223 (558)
T KOG0882|consen 150 IRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDR------ 223 (558)
T ss_pred EEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCccc------
Confidence 99987665555555 7899999872 111111 00000 0111245778887776666555
Q ss_pred ceEEEEEcCCCeeEEEEEecC--------------------------------CC-eeEEEEeeCCCeEEEEeCCeEEEE
Q 046773 363 RLAIVRRVDTFEEVCRFSLRA--------------------------------DR-NVNVMGCMNQGYALMCVEGVIRVW 409 (453)
Q Consensus 363 ~~i~Iw~~~tg~~v~~l~~~~--------------------------------~~-v~~~~~~~~~~~lls~s~~tIrlW 409 (453)
.|++++..+|..++.+.-.+ .. ....+|.-.+.+++-++-=-||+-
T Consensus 224 -kVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvi 302 (558)
T KOG0882|consen 224 -KVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVI 302 (558)
T ss_pred -EEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEE
Confidence 99999988875433321110 00 012344445666665544348999
Q ss_pred ECCCCeEEEEe
Q 046773 410 EVEGGEYMYSF 420 (453)
Q Consensus 410 D~~tG~~l~tL 420 (453)
++.|+++.+.|
T Consensus 303 n~~tn~v~ri~ 313 (558)
T KOG0882|consen 303 NLDTNTVVRIL 313 (558)
T ss_pred EeecCeEEEEe
Confidence 99999998887
No 304
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=95.83 E-value=1.6 Score=46.03 Aligned_cols=233 Identities=10% Similarity=0.072 Sum_probs=112.7
Q ss_pred EEEEEEc--CCeEEEEeCCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeC--------------
Q 046773 195 VSGIIIT--DSQLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLA-------------- 258 (453)
Q Consensus 195 V~~i~f~--g~~LasgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~-------------- 258 (453)
+..++++ |..|++. .-.-|.+|.-...+ ...+.....| .-++|||.+++ |.+=+.
T Consensus 35 ~~~~~~SP~G~~l~~~-~~~~V~~~~g~~~~-~l~~~~~~~V----~~~~fSP~~kY---L~tw~~~pi~~pe~e~sp~~ 105 (561)
T COG5354 35 VAYVSESPLGTYLFSE-HAAGVECWGGPSKA-KLVRFRHPDV----KYLDFSPNEKY---LVTWSREPIIEPEIEISPFT 105 (561)
T ss_pred hhheeecCcchheehh-hccceEEccccchh-heeeeecCCc----eecccCcccce---eeeeccCCccChhhccCCcc
Confidence 4445555 4555542 22337888755522 3333322222 24799999997 444221
Q ss_pred -CCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEE-EcCCcEEEEECCCCceE-EEE-eecc
Q 046773 259 -GRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVA-CTSSRVITFDLRNQGMV-LGE-RGYG 334 (453)
Q Consensus 259 -D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~va-s~d~tIrlWDl~t~~~~-~~~-~g~~ 334 (453)
++.+.|||+++|.+..+-.... -.-.+|. -++|+-+...+| -....+.+.++ |+..- +.. ....
T Consensus 106 ~~n~~~vwd~~sg~iv~sf~~~~-q~~~~Wp----------~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~ 173 (561)
T COG5354 106 SKNNVFVWDIASGMIVFSFNGIS-QPYLGWP----------VLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKNLRP 173 (561)
T ss_pred ccCceeEEeccCceeEeeccccC-Ccccccc----------eeeeeecchhhhhhccCeEEEEec-CCccccCchhhccc
Confidence 3358999999999432110000 0000111 134543333222 12246888887 43221 111 0011
Q ss_pred CCeEEEEEEecCC--EEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEE------e----
Q 046773 335 RGLYVTSVDVNAE--AYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMC------V---- 402 (453)
Q Consensus 335 ~~~~v~~~~~~g~--~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~------s---- 402 (453)
. -+..|++++. .-..+----+......+++||.+..+..+.+-++-.-.-..+-+.+.+.+++.- +
T Consensus 174 ~--gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsy 251 (561)
T COG5354 174 V--GILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSY 251 (561)
T ss_pred c--ceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccce
Confidence 1 1334444332 211111111111223488888888665554433322111234445566665421 1
Q ss_pred -C-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCE--EEEE-eCCcEEEEecC
Q 046773 403 -E-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRH--VAAS-CGTNIHLWDFG 452 (453)
Q Consensus 403 -~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~--lasg-~D~~IklWDl~ 452 (453)
+ .++.|.+++...| ....+-.+. |. ++.|+++. +++| .+.++-+.|+.
T Consensus 252 fgesnLyl~~~~e~~i-~V~~~~~~p-Vhdf~W~p~S~~F~vi~g~~pa~~s~~~lr 306 (561)
T COG5354 252 FGESNLYLLRITERSI-PVEKDLKDP-VHDFTWEPLSSRFAVISGYMPASVSVFDLR 306 (561)
T ss_pred eccceEEEEeeccccc-ceecccccc-ceeeeecccCCceeEEecccccceeecccc
Confidence 1 5788888874333 332244566 76 55687764 4577 88888888875
No 305
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=95.58 E-value=0.2 Score=49.76 Aligned_cols=88 Identities=9% Similarity=0.135 Sum_probs=48.1
Q ss_pred eEEEEEcCCC-eeEEEEEecCCC-------eeEEEEeeCCCeEEE-EeC-CeEEEEECCCC-eEE---EEe----cc--c
Q 046773 364 LAIVRRVDTF-EEVCRFSLRADR-------NVNVMGCMNQGYALM-CVE-GVIRVWEVEGG-EYM---YSF----RE--R 423 (453)
Q Consensus 364 ~i~Iw~~~tg-~~v~~l~~~~~~-------v~~~~~~~~~~~lls-~s~-~tIrlWD~~tG-~~l---~tL----~g--h 423 (453)
-|.+|+++.. .+...+...|.. +.+.-|+|..-.+.. +++ |+|+|=|+... -|. .++ .+ |
T Consensus 194 rINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~ 273 (460)
T COG5170 194 RINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDV 273 (460)
T ss_pred eeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccc
Confidence 5677877643 222222233322 334456664433333 333 99999999842 221 111 11 1
Q ss_pred ------CCceEE--EEecCCCEEEEEeCCcEEEEecC
Q 046773 424 ------IGEEVI--AFVGDDRHVAASCGTNIHLWDFG 452 (453)
Q Consensus 424 ------~~~~V~--a~s~d~~~lasg~D~~IklWDl~ 452 (453)
... |. .|++.||+|++-.=-+|+|||..
T Consensus 274 ~ff~eivsS-ISD~kFs~ngryIlsRdyltvkiwDvn 309 (460)
T COG5170 274 DFFEEIVSS-ISDFKFSDNGRYILSRDYLTVKIWDVN 309 (460)
T ss_pred hhHHHHhhh-hcceEEcCCCcEEEEeccceEEEEecc
Confidence 111 22 46789999987766799999974
No 306
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=95.55 E-value=2.7 Score=41.35 Aligned_cols=200 Identities=16% Similarity=0.237 Sum_probs=96.3
Q ss_pred EEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCC--------eEEEEeCCCCEEEE
Q 046773 148 RCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDS--------QLIFATLDGDIHVA 217 (453)
Q Consensus 148 ~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~--------~LasgS~D~tIkvW 217 (453)
+-|+||+ ..||.+..-++|+++|+.. ..+.++.+.+ ...+..+.+|+++.|-.- .|+--..++.++-+
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~-~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAM-SFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCccc-ccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 4588886 5899999999999999975 5566776533 222334567888877321 23333344444433
Q ss_pred EeecCC-cceEE-eeecce---ecCce-EEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeee
Q 046773 218 VIDDVA-NETRT-AHFGSV---MDDGV-LIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLT 291 (453)
Q Consensus 218 d~~~~g-~~~~~-~~~~~v---~~~~~-~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~ 291 (453)
-+.. | .+-++ .|+-.+ ...++ .+.++|.-+. .|+.|.....-..+-. . .-.+..|+.|.
T Consensus 125 ~vs~-gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~L--LlVgG~~~~~~~~s~a-~-----------~~GLtaWRiL~ 189 (282)
T PF15492_consen 125 LVSV-GTNQGYQENHSFSFSSHYPHGINSAVYHPKHRL--LLVGGCEQNQDGMSKA-S-----------SCGLTAWRILS 189 (282)
T ss_pred EEEc-ccCCcceeeEEEEecccCCCceeEEEEcCCCCE--EEEeccCCCCCccccc-c-----------ccCceEEEEcC
Confidence 3321 1 01111 011000 11111 3567776664 2344433321111100 0 01233355443
Q ss_pred eeccceeEEEEcCCceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcC
Q 046773 292 EFTEFVGRVRVTSHESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVD 371 (453)
Q Consensus 292 ~h~~~v~~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~ 371 (453)
+-.... .|.-.++.+...+ .+-.+|.+-+.+.-.........+.-.+++|+|..||+...+| .+.+|+++
T Consensus 190 ~~Pyyk-~v~~~~~~~~~~~--~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG-------~lsLW~iP 259 (282)
T PF15492_consen 190 DSPYYK-QVTSSEDDITASS--KRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSG-------SLSLWEIP 259 (282)
T ss_pred CCCcEE-EccccCccccccc--cccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCC-------eEEEEecC
Confidence 322111 1111111111111 1122444333211101011133456678999999999999999 99999998
Q ss_pred CCe
Q 046773 372 TFE 374 (453)
Q Consensus 372 tg~ 374 (453)
.-.
T Consensus 260 sL~ 262 (282)
T PF15492_consen 260 SLR 262 (282)
T ss_pred cch
Confidence 643
No 307
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.51 E-value=0.023 Score=35.52 Aligned_cols=24 Identities=33% Similarity=0.631 Sum_probs=21.6
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEE
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFD 170 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD 170 (453)
+++++|++ .++++++.|++|++||
T Consensus 15 i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 15 VTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred eeEEEECCCCCEEEEecCCCeEEEcC
Confidence 78999875 5999999999999996
No 308
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.22 E-value=5.3 Score=42.75 Aligned_cols=32 Identities=25% Similarity=0.218 Sum_probs=26.1
Q ss_pred EecC-CEEEEEeCCCcEEEEECCCCeEEEEecC
Q 046773 151 TLSD-LYLACGFADGAVRLFDLTTRLHVRTFRP 182 (453)
Q Consensus 151 afs~-~~LaSGS~D~TIrlWD~~tg~~~~tl~g 182 (453)
++.+ +++..++.|+.|.-.|++||+.+..+..
T Consensus 106 ~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 106 AYWDPRKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred EEccCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 3444 7788888999999999999999887753
No 309
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=95.21 E-value=0.19 Score=48.76 Aligned_cols=70 Identities=19% Similarity=0.202 Sum_probs=51.2
Q ss_pred eEEEEEEc---CCeEEEEeCCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCC
Q 046773 194 AVSGIIIT---DSQLIFATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQ 268 (453)
Q Consensus 194 ~V~~i~f~---g~~LasgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~ 268 (453)
+|.+++-+ ...++.|+.|+.+-|||+.... ...+..|...+. -|.|+|..-- .|+++|.|+.+--||..
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~----eV~FHpk~p~--~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIW----EVHFHPKNPE--HLFTCSEDGSLWHWDAS 254 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhh----heeccCCCch--heeEecCCCcEEEEcCC
Confidence 35556544 3568889999999999998722 345566765554 3899998432 38999999999999986
Q ss_pred C
Q 046773 269 A 269 (453)
Q Consensus 269 t 269 (453)
+
T Consensus 255 ~ 255 (319)
T KOG4714|consen 255 T 255 (319)
T ss_pred C
Confidence 5
No 310
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=95.04 E-value=0.41 Score=53.58 Aligned_cols=180 Identities=18% Similarity=0.105 Sum_probs=109.0
Q ss_pred EEecCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCC-cceEE
Q 046773 150 LTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVA-NETRT 228 (453)
Q Consensus 150 lafs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g-~~~~~ 228 (453)
+..++..++-|+.-..+-..|+.+++..++..--.. .|.=+...++.|..|..-|+|-+-|.++.. ++++-
T Consensus 143 ~~~~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~--------~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~ 214 (1118)
T KOG1275|consen 143 LHMGPSTLIMGGLQEKLIHIDLNTEKETRTTNVSAS--------GVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFD 214 (1118)
T ss_pred hccCCcceeecchhhheeeeecccceeeeeeeccCC--------ceEEEEecCcEEEeecccceEEeecCCcCceeeeee
Confidence 333566666677777777889999998877642110 133245567888899999999999987733 77888
Q ss_pred eeecceecCceEEEEeCCCceeeEEEEee---------CCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeE
Q 046773 229 AHFGSVMDDGVLIDFTGCSRYWVGLYAGL---------AGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGR 299 (453)
Q Consensus 229 ~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS---------~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~ 299 (453)
.|++.+ .+|+-.|.. |+|++ .|.-|+|||++.=+.+. |-. -+.++ .-
T Consensus 215 aHs~si------SDfDv~GNl---LitCG~S~R~~~l~~D~FvkVYDLRmmral~------PI~--------~~~~P-~f 270 (1118)
T KOG1275|consen 215 AHSGSI------SDFDVQGNL---LITCGYSMRRYNLAMDPFVKVYDLRMMRALS------PIQ--------FPYGP-QF 270 (1118)
T ss_pred ccccce------eeeeccCCe---EEEeecccccccccccchhhhhhhhhhhccC------Ccc--------cccCc-hh
Confidence 888765 366666654 55543 47889999998765321 100 01111 11
Q ss_pred EEEcC---CceEEEEcCCcEEEEE---CCCCceEEEEeeccCCeEEEEEE--ecCCEEEEEeCCCccccCcceEEEEE
Q 046773 300 VRVTS---HESAVACTSSRVITFD---LRNQGMVLGERGYGRGLYVTSVD--VNAEAYIVVENRELENQNRRLAIVRR 369 (453)
Q Consensus 300 v~~s~---~~~~vas~d~tIrlWD---l~t~~~~~~~~g~~~~~~v~~~~--~~g~~l~s~s~dg~~~~~~~~i~Iw~ 369 (453)
++|.| ..++++|..+...+=| +.+... ....-+.-+..+.+|+ ++++.++.+..+| .|.+|-
T Consensus 271 lrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~-~~~~v~p~~s~i~~fDiSsn~~alafgd~~g-------~v~~wa 340 (1118)
T KOG1275|consen 271 LRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPA-GVKMVNPNGSGISAFDISSNGDALAFGDHEG-------HVNLWA 340 (1118)
T ss_pred hhhcccccceEEEEecccceeeccccccCCCcc-ceeEEccCCCcceeEEecCCCceEEEecccC-------cEeeec
Confidence 44554 2356667777777777 333211 0111122223345554 5566677777777 888995
No 311
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.86 E-value=0.097 Score=54.14 Aligned_cols=193 Identities=11% Similarity=0.057 Sum_probs=111.7
Q ss_pred CCeEEEEeCCCCEEEEEeec-CC---cceEEeeecceecCceEEEEeCCCceeeEEEEeeC-CCeEEEeeCCCCcEEecc
Q 046773 202 DSQLIFATLDGDIHVAVIDD-VA---NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLA-GRAFHIWDRQAEEVFVGG 276 (453)
Q Consensus 202 g~~LasgS~D~tIkvWd~~~-~g---~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~-D~tIrvWD~~tg~~~~g~ 276 (453)
.+.++++|.|+.+|-|--.. .| +...+.|.+-+. .++.+-||.. ++|.+. |+.+|+.|++.-....+-
T Consensus 20 a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~----sl~~S~dg~L---~~Sv~d~Dhs~KvfDvEn~Dminmi 92 (558)
T KOG0882|consen 20 AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVIL----SLAVSYDGWL---FRSVEDPDHSVKVFDVENFDMINMI 92 (558)
T ss_pred hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHH----hhhcccccee---EeeccCcccceeEEEeeccchhhhc
Confidence 56789999999999996332 23 122233443332 2455666653 678776 999999999875422111
Q ss_pred cccCCcceeeeeeeeeeccceeEEEEcCC---ceEEEE-cCCcEEEEECCCCceEEE-E-eeccCCeEEEEEEecCCEEE
Q 046773 277 DLTDHNTVMGWRMLTEFTEFVGRVRVTSH---ESAVAC-TSSRVITFDLRNQGMVLG-E-RGYGRGLYVTSVDVNAEAYI 350 (453)
Q Consensus 277 ~l~~~~~v~~w~~l~~h~~~v~~v~~s~~---~~~vas-~d~tIrlWDl~t~~~~~~-~-~g~~~~~~v~~~~~~g~~l~ 350 (453)
.+. -|.+...++++ .++ .++++. .++.|-+.|-....|... . ..|...+.+.-+.+.++..+
T Consensus 93 KL~---------~lPg~a~wv~s---kGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~v 160 (558)
T KOG0882|consen 93 KLV---------DLPGFAEWVTS---KGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAV 160 (558)
T ss_pred ccc---------cCCCceEEecC---CCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccccee
Confidence 111 12233333322 111 123333 246799999887655432 2 44655555555677777777
Q ss_pred EEeCCCccccCcceEEEEEcCC-CeeEE-----EEEe---------cCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCC
Q 046773 351 VVENRELENQNRRLAIVRRVDT-FEEVC-----RFSL---------RADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGG 414 (453)
Q Consensus 351 s~s~dg~~~~~~~~i~Iw~~~t-g~~v~-----~l~~---------~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG 414 (453)
|..-.| .|.-|..+- .+-.. .+.. ......++-+++++..+.+-+. .+||+.+..+|
T Consensus 161 SiD~~g-------mVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG 233 (558)
T KOG0882|consen 161 SIDISG-------MVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG 233 (558)
T ss_pred eccccc-------eeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccc
Confidence 766667 888887762 11000 0000 0111335667788877766556 99999999999
Q ss_pred eEEEEe
Q 046773 415 EYMYSF 420 (453)
Q Consensus 415 ~~l~tL 420 (453)
+.++.+
T Consensus 234 klvqei 239 (558)
T KOG0882|consen 234 KLVQEI 239 (558)
T ss_pred hhhhhh
Confidence 887655
No 312
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=94.60 E-value=0.014 Score=57.82 Aligned_cols=44 Identities=18% Similarity=0.417 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhhhhhhHhHhhhhhHHhhcccchhccCCchhHHHhh
Q 046773 47 EALAAQVAIEASRSVGRLAAAAALANVFQVCSTWRAVSRSDLLWHRLT 94 (453)
Q Consensus 47 ~~l~~~~~~~~~~~~~~~~~~~~l~~~aqv~~~W~~l~~~~~~w~~~~ 94 (453)
+.||.|+...|.+.|- -+.|.+++-||++|..+++|+.+|+.+=
T Consensus 99 ~slpDEill~IFs~L~----kk~LL~~~~VC~Rfyr~~~de~lW~~lD 142 (419)
T KOG2120|consen 99 DSLPDEILLGIFSCLC----KKELLKVSGVCKRFYRLASDESLWQTLD 142 (419)
T ss_pred ccCCHHHHHHHHHhcc----HHHHHHHHHHHHHHhhccccccceeeec
Confidence 6799999999998876 6799999999999999999999998764
No 313
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=94.49 E-value=0.44 Score=53.31 Aligned_cols=147 Identities=17% Similarity=0.195 Sum_probs=94.3
Q ss_pred EEEEecCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeC---------CCCEEEEE
Q 046773 148 RCLTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATL---------DGDIHVAV 218 (453)
Q Consensus 148 ~~lafs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~---------D~tIkvWd 218 (453)
.=+-.+++++-+|..-|||-|=|..+.+.+++|..|.+ .++.+...|.+|+|++. |.-|||||
T Consensus 181 ~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~--------siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYD 252 (1118)
T KOG1275|consen 181 TIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSG--------SISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYD 252 (1118)
T ss_pred EEEEecCcEEEeecccceEEeecCCcCceeeeeecccc--------ceeeeeccCCeEEEeecccccccccccchhhhhh
Confidence 33555788999999999999999999999999998765 67778888999998753 55689999
Q ss_pred eecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCc-ceeeeeeeeeeccc
Q 046773 219 IDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHN-TVMGWRMLTEFTEF 296 (453)
Q Consensus 219 ~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~-~v~~w~~l~~h~~~ 296 (453)
+.... +.++..+.+.- .+.|.|.=.. .|+..|.-+...+=|..+= .+|. .+ .+..-..+.
T Consensus 253 LRmmral~PI~~~~~P~-----flrf~Psl~t--~~~V~S~sGq~q~vd~~~l--------sNP~~~~---~~v~p~~s~ 314 (1118)
T KOG1275|consen 253 LRMMRALSPIQFPYGPQ-----FLRFHPSLTT--RLAVTSQSGQFQFVDTATL--------SNPPAGV---KMVNPNGSG 314 (1118)
T ss_pred hhhhhccCCcccccCch-----hhhhcccccc--eEEEEecccceeecccccc--------CCCccce---eEEccCCCc
Confidence 87632 45555443321 2556665211 2455566666777663321 0110 00 011111223
Q ss_pred eeEEEEcCCceEEEEc--CCcEEEEE
Q 046773 297 VGRVRVTSHESAVACT--SSRVITFD 320 (453)
Q Consensus 297 v~~v~~s~~~~~vas~--d~tIrlWD 320 (453)
+.+..+++.+.++|-. ++.|-+|-
T Consensus 315 i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 315 ISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ceeEEecCCCceEEEecccCcEeeec
Confidence 5566777777766644 47899996
No 314
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.08 E-value=0.24 Score=52.54 Aligned_cols=102 Identities=14% Similarity=0.199 Sum_probs=70.5
Q ss_pred EEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC------------CeEE
Q 046773 340 TSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE------------GVIR 407 (453)
Q Consensus 340 ~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~------------~tIr 407 (453)
..++|-|.+|++----| |.+|=-.....++.| .|| .|+-+-|+|+-+||++-+- ..+.
T Consensus 216 v~wSP~GTYL~t~Hk~G--------I~lWGG~~f~r~~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~ 285 (698)
T KOG2314|consen 216 VRWSPKGTYLVTFHKQG--------IALWGGESFDRIQRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLI 285 (698)
T ss_pred EEecCCceEEEEEeccc--------eeeecCccHHHHHhc-cCC-CceeeecCCccceEEEecCCccccCcccCCCceEE
Confidence 45677787777655444 567754444445555 244 3788889999999997541 5799
Q ss_pred EEECCCCeEEEEecccCC-ceEE---EEecCCCEEEEEeCCcEEEEec
Q 046773 408 VWEVEGGEYMYSFRERIG-EEVI---AFVGDDRHVAASCGTNIHLWDF 451 (453)
Q Consensus 408 lWD~~tG~~l~tL~gh~~-~~V~---a~s~d~~~lasg~D~~IklWDl 451 (453)
|||+.||..+++|.--.+ ..+| ..|.|++++|.-.-.+|.|++.
T Consensus 286 IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEt 333 (698)
T KOG2314|consen 286 IWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYET 333 (698)
T ss_pred EEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEec
Confidence 999999999998864222 2234 6789999998763356777653
No 315
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.07 E-value=6.5 Score=38.57 Aligned_cols=32 Identities=22% Similarity=0.220 Sum_probs=28.6
Q ss_pred EEecCCEEEEEeCCCcEEEEECCCCeEEEEec
Q 046773 150 LTLSDLYLACGFADGAVRLFDLTTRLHVRTFR 181 (453)
Q Consensus 150 lafs~~~LaSGS~D~TIrlWD~~tg~~~~tl~ 181 (453)
++|++..|-.||.|++...=|..+..|+...+
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEecc
Confidence 56777889999999999999999999998876
No 316
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=93.89 E-value=1.7 Score=45.85 Aligned_cols=177 Identities=13% Similarity=0.110 Sum_probs=94.4
Q ss_pred EEEeCCCceeeEEEEeeCC-CeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEE-EcCC--
Q 046773 241 IDFTGCSRYWVGLYAGLAG-RAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVA-CTSS-- 314 (453)
Q Consensus 241 v~Fs~dg~~~~~LaSgS~D-~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~va-s~d~-- 314 (453)
-.++|+++.+..+.--... ..|.++|+++++...-. +..++ ...-+|+|++. +.+ +.|+
T Consensus 198 p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~------------~~~g~---~~~P~fspDG~~l~f~~~rdg~~ 262 (425)
T COG0823 198 PAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL------------NFNGN---NGAPAFSPDGSKLAFSSSRDGSP 262 (425)
T ss_pred cccCcCCCceEEEEEecCCCceEEEEeccCCccceee------------ccCCc---cCCccCCCCCCEEEEEECCCCCc
Confidence 3688888875443222233 46899999998821100 01122 22346788763 332 3344
Q ss_pred cEEEEECCCCceEEEE-eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEee
Q 046773 315 RVITFDLRNQGMVLGE-RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCM 393 (453)
Q Consensus 315 tIrlWDl~t~~~~~~~-~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~ 393 (453)
.|-+-|+.++.. ..+ .+.+.. .-.+++|+|+.++-+|+.+. ...|-+.+++..+ +..++.....-..-..+|
T Consensus 263 ~iy~~dl~~~~~-~~Lt~~~gi~-~~Ps~spdG~~ivf~Sdr~G----~p~I~~~~~~g~~-~~riT~~~~~~~~p~~Sp 335 (425)
T COG0823 263 DIYLMDLDGKNL-PRLTNGFGIN-TSPSWSPDGSKIVFTSDRGG----RPQIYLYDLEGSQ-VTRLTFSGGGNSNPVWSP 335 (425)
T ss_pred cEEEEcCCCCcc-eecccCCccc-cCccCCCCCCEEEEEeCCCC----CcceEEECCCCCc-eeEeeccCCCCcCccCCC
Confidence 577889988653 223 222211 13678999999877765441 1134444555443 344554432222445678
Q ss_pred CCCeEEEEeC--C--eEEEEECCCCeEEEEecccCCceEEEEecCCCEEE
Q 046773 394 NQGYALMCVE--G--VIRVWEVEGGEYMYSFRERIGEEVIAFVGDDRHVA 439 (453)
Q Consensus 394 ~~~~lls~s~--~--tIrlWD~~tG~~l~tL~gh~~~~V~a~s~d~~~la 439 (453)
++++++..+. + .|-+-|+.++.-++.|..-..-.--+++++++.|.
T Consensus 336 dG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~ 385 (425)
T COG0823 336 DGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIM 385 (425)
T ss_pred CCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEE
Confidence 9999887662 3 36667777765455553211000014556666654
No 317
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=93.74 E-value=2.6 Score=35.85 Aligned_cols=53 Identities=19% Similarity=0.231 Sum_probs=38.0
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEE-EcCCeEEEEeCCCCEEEEE
Q 046773 155 LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGII-ITDSQLIFATLDGDIHVAV 218 (453)
Q Consensus 155 ~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~-f~g~~LasgS~D~tIkvWd 218 (453)
+.|+.||.|..||||+=+ +.+..+.-.. .|..++ +.+.+.++|...+||-|++
T Consensus 16 ~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~---------~v~~L~~~~~~~F~Y~l~NGTVGvY~ 69 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGD--EIVAEITETD---------KVTSLCSLGGGRFAYALANGTVGVYD 69 (111)
T ss_pred ceEEEecCCcEEEEEeCC--cEEEEEeccc---------ceEEEEEcCCCEEEEEecCCEEEEEe
Confidence 589999999999999865 5555554322 355554 4567788888888886654
No 318
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=93.73 E-value=5.2 Score=40.17 Aligned_cols=135 Identities=14% Similarity=0.123 Sum_probs=80.8
Q ss_pred EEEcC-CceEEEEcC--Cc-EEEEECCCCceEEEEe------eccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEE
Q 046773 300 VRVTS-HESAVACTS--SR-VITFDLRNQGMVLGER------GYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRR 369 (453)
Q Consensus 300 v~~s~-~~~~vas~d--~t-IrlWDl~t~~~~~~~~------g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~ 369 (453)
++++| +..+++-.. ++ ..+||.++++.+..+. ..+| -+|+++|+.|.+.-.|- +.....|-|||
T Consensus 10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH----g~fs~dG~~LytTEnd~--~~g~G~IgVyd 83 (305)
T PF07433_consen 10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH----GVFSPDGRLLYTTENDY--ETGRGVIGVYD 83 (305)
T ss_pred eeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC----EEEcCCCCEEEEecccc--CCCcEEEEEEE
Confidence 44555 334444332 44 6789999987655431 1222 36899999988764443 22244899999
Q ss_pred cC-CCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-------------------CeEEEEECCCCeEEEE--ec--ccCC
Q 046773 370 VD-TFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-------------------GVIRVWEVEGGEYMYS--FR--ERIG 425 (453)
Q Consensus 370 ~~-tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-------------------~tIrlWD~~tG~~l~t--L~--gh~~ 425 (453)
+. +.+.+.++..+.=+--.+...+|+..|+.+.+ ..+-+=|..+|+.+.. |+ -|.-
T Consensus 84 ~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~l 163 (305)
T PF07433_consen 84 AARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQL 163 (305)
T ss_pred CcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccc
Confidence 99 66777777655422223455667767766532 1344557788887765 52 2555
Q ss_pred ceEE--EEecCCCEEEEE
Q 046773 426 EEVI--AFVGDDRHVAAS 441 (453)
Q Consensus 426 ~~V~--a~s~d~~~lasg 441 (453)
+ +. ++.+||..+...
T Consensus 164 S-iRHLa~~~~G~V~~a~ 180 (305)
T PF07433_consen 164 S-IRHLAVDGDGTVAFAM 180 (305)
T ss_pred c-eeeEEecCCCcEEEEE
Confidence 5 65 556777655543
No 319
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=93.59 E-value=12 Score=40.04 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=44.6
Q ss_pred cCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcC-CeEEEEeCCCCEEEEEeecCC
Q 046773 153 SDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITD-SQLIFATLDGDIHVAVIDDVA 223 (453)
Q Consensus 153 s~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g-~~LasgS~D~tIkvWd~~~~g 223 (453)
.+..|..++.|+.|.-.|++||+.+.++.-..............++++.+ .+++.++.|+.|.-.|.++ |
T Consensus 60 ~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~T-G 130 (488)
T cd00216 60 VDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAET-G 130 (488)
T ss_pred ECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCC-C
Confidence 45566678888999999999999887765321100000000012234444 7888888999988888877 5
No 320
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=93.55 E-value=0.029 Score=57.81 Aligned_cols=43 Identities=14% Similarity=0.444 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhhhhhhHhHhhhhhHHhhcccchhccCCchhHHHh
Q 046773 47 EALAAQVAIEASRSVGRLAAAAALANVFQVCSTWRAVSRSDLLWHRL 93 (453)
Q Consensus 47 ~~l~~~~~~~~~~~~~~~~~~~~l~~~aqv~~~W~~l~~~~~~w~~~ 93 (453)
-.||.|+.+|+.+|||+. +|+.+||+|+.|..++-|..=|++.
T Consensus 73 ~~LPpEl~lkvFS~LDtk----sl~r~a~~c~~~n~~AlD~~~~q~i 115 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDTK----SLCRAAQCCTMWNKLALDGSCWQHI 115 (483)
T ss_pred ccCCHHHHHHHHHHHhHH----HHHHHHHHHHHhhhhhhccccceee
Confidence 449999999999998854 9999999999999999999999764
No 321
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=93.45 E-value=0.17 Score=49.18 Aligned_cols=128 Identities=9% Similarity=0.005 Sum_probs=74.0
Q ss_pred CcEEEEECCCCceEEEEeeccCCeEEEEEEecCC-EEEEEeCCCccccCcceEEEEEcCCCe-eEEEEEecCCCeeEEEE
Q 046773 314 SRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAE-AYIVVENRELENQNRRLAIVRRVDTFE-EVCRFSLRADRNVNVMG 391 (453)
Q Consensus 314 ~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~-~l~s~s~dg~~~~~~~~i~Iw~~~tg~-~v~~l~~~~~~v~~~~~ 391 (453)
+..+.|+++..+.+..-.--...+...|..|... .++.++.|| .+.|||+.... ++..+..|...+..+.|
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg-------~~~l~d~rn~~~p~S~l~ahk~~i~eV~F 231 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDG-------IVGLWDARNVAMPVSLLKAHKAEIWEVHF 231 (319)
T ss_pred cceeeecccccccccccccccccchhhhCCcccccEEEEecCCC-------eEEEEEcccccchHHHHHHhhhhhhheec
Confidence 3456788775433222110111122223345444 456678888 99999998753 23334455555667778
Q ss_pred ee-CCCeEEEEeC-CeEEEEECCCCeEEEEe---cccC----------------------CceEEEEecCCCEEEEE-eC
Q 046773 392 CM-NQGYALMCVE-GVIRVWEVEGGEYMYSF---RERI----------------------GEEVIAFVGDDRHVAAS-CG 443 (453)
Q Consensus 392 ~~-~~~~lls~s~-~tIrlWD~~tG~~l~tL---~gh~----------------------~~~V~a~s~d~~~lasg-~D 443 (453)
+| ++..|++|+. |.+--||..+ +.|..- .+|+ -. |++|.--|.+||+| .-
T Consensus 232 Hpk~p~~Lft~sedGslw~wdas~-~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~S-insfDV~g~~lVcgtd~ 309 (319)
T KOG4714|consen 232 HPKNPEHLFTCSEDGSLWHWDAST-TFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLS-INSFDVLGPCLVCGTDA 309 (319)
T ss_pred cCCCchheeEecCCCcEEEEcCCC-ceEEecCccccccccccCCcccceEeeecccccccee-eeeeeccCceEEecccc
Confidence 77 6778888887 9999999874 222210 1111 11 33444467789988 55
Q ss_pred CcEEEEe
Q 046773 444 TNIHLWD 450 (453)
Q Consensus 444 ~~IklWD 450 (453)
+.|.|.+
T Consensus 310 eaIyl~~ 316 (319)
T KOG4714|consen 310 EAIYLTR 316 (319)
T ss_pred ceEEEec
Confidence 7777764
No 322
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=93.29 E-value=1.7 Score=48.18 Aligned_cols=145 Identities=13% Similarity=0.077 Sum_probs=86.0
Q ss_pred eEEEEcCCceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEE------------EecCCEEEEEeCCCccccCcceE
Q 046773 298 GRVRVTSHESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSV------------DVNAEAYIVVENRELENQNRRLA 365 (453)
Q Consensus 298 ~~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~------------~~~g~~l~s~s~dg~~~~~~~~i 365 (453)
+++-.+|.+++.=++...|-+=|..+-+.+.....|. ..|+.+ ++....+..|++|- .+-|
T Consensus 19 ~A~Dw~~~GLiAygshslV~VVDs~s~q~iqsie~h~--s~V~~VrWap~~~p~~llS~~~~~lliAsaD~-----~GrI 91 (1062)
T KOG1912|consen 19 NAADWSPSGLIAYGSHSLVSVVDSRSLQLIQSIELHQ--SAVTSVRWAPAPSPRDLLSPSSSQLLIASADI-----SGRI 91 (1062)
T ss_pred cccccCccceEEEecCceEEEEehhhhhhhhccccCc--cceeEEEeccCCCchhccCccccceeEEeccc-----cCcE
Confidence 4555677776554555678888988876655544343 344444 22222344444443 1178
Q ss_pred EEEEcCCCeeEEEEEecCCCeeEEEEee---CCCeEE-EEeC-CeEEEEECCCCeEEEEecccCCceEEEEe---cCCCE
Q 046773 366 IVRRVDTFEEVCRFSLRADRNVNVMGCM---NQGYAL-MCVE-GVIRVWEVEGGEYMYSFRERIGEEVIAFV---GDDRH 437 (453)
Q Consensus 366 ~Iw~~~tg~~v~~l~~~~~~v~~~~~~~---~~~~ll-s~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~a~s---~d~~~ 437 (453)
-|||..++..+..+.-+.+.++.+.+-+ +++.++ +-.+ ++|-||+..||+.+....--+.. ..+|. +|.+.
T Consensus 92 il~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~i-Ls~f~~DPfd~rh 170 (1062)
T KOG1912|consen 92 ILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEI-LSCFRVDPFDSRH 170 (1062)
T ss_pred EEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcc-eeeeeeCCCCcce
Confidence 8899888877777766666666666554 344444 3444 99999999999987664322223 33455 35565
Q ss_pred EE-EEeCCcEEEEe
Q 046773 438 VA-ASCGTNIHLWD 450 (453)
Q Consensus 438 la-sg~D~~IklWD 450 (453)
+. .+..|.|.+-+
T Consensus 171 ~~~l~s~g~vl~~~ 184 (1062)
T KOG1912|consen 171 FCVLGSKGFVLSCK 184 (1062)
T ss_pred EEEEccCceEEEEe
Confidence 53 34555555443
No 323
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=92.84 E-value=2.7 Score=46.65 Aligned_cols=114 Identities=12% Similarity=0.155 Sum_probs=67.5
Q ss_pred EEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCC------------ce
Q 046773 240 LIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSH------------ES 307 (453)
Q Consensus 240 ~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~------------~~ 307 (453)
.++.+|.|= +|=| ....|-|=|..+-+++ +.+.-|...|+.|+..|. .+
T Consensus 20 A~Dw~~~GL----iAyg-shslV~VVDs~s~q~i--------------qsie~h~s~V~~VrWap~~~p~~llS~~~~~l 80 (1062)
T KOG1912|consen 20 AADWSPSGL----IAYG-SHSLVSVVDSRSLQLI--------------QSIELHQSAVTSVRWAPAPSPRDLLSPSSSQL 80 (1062)
T ss_pred ccccCccce----EEEe-cCceEEEEehhhhhhh--------------hccccCccceeEEEeccCCCchhccCccccce
Confidence 356677652 3333 3456888888776643 234456677888877531 24
Q ss_pred EEEEcC--CcEEEEECCCCceEEEEeeccCCeEEEEE----EecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEE
Q 046773 308 AVACTS--SRVITFDLRNQGMVLGERGYGRGLYVTSV----DVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRF 379 (453)
Q Consensus 308 ~vas~d--~tIrlWDl~t~~~~~~~~g~~~~~~v~~~----~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l 379 (453)
++|+.| |.|-|||...+..+.-+..+.....-.+. +-+.+.++...... ++-+|+.+||+.+-..
T Consensus 81 liAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss-------~lvLwntdtG~k~Wk~ 151 (1062)
T KOG1912|consen 81 LIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSS-------TLVLWNTDTGEKFWKY 151 (1062)
T ss_pred eEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCc-------EEEEEEccCCceeecc
Confidence 567776 88999999886443222222211111221 22334566666666 9999999999765443
No 324
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=92.77 E-value=1.7 Score=46.33 Aligned_cols=111 Identities=10% Similarity=0.090 Sum_probs=74.6
Q ss_pred EEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEEEcC---C
Q 046773 240 LIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVACTS---S 314 (453)
Q Consensus 240 ~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~vas~d---~ 314 (453)
.|.++|+|+-.. ++-|-+=.+|.|+|++-.-.+.- -.++-|++.|+|.+. ++|+-+ +
T Consensus 275 dv~W~~s~~EF~-VvyGfMPAkvtifnlr~~~v~df-----------------~egpRN~~~fnp~g~ii~lAGFGNL~G 336 (566)
T KOG2315|consen 275 DVTWSPSGREFA-VVYGFMPAKVTIFNLRGKPVFDF-----------------PEGPRNTAFFNPHGNIILLAGFGNLPG 336 (566)
T ss_pred EEEECCCCCEEE-EEEecccceEEEEcCCCCEeEeC-----------------CCCCccceEECCCCCEEEEeecCCCCC
Confidence 478999987654 44567778889999865444321 025678899998774 444432 7
Q ss_pred cEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcC
Q 046773 315 RVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVD 371 (453)
Q Consensus 315 tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~ 371 (453)
.|-+||+.+.+++-... .....+..++|+|+.+++++-.- -=+.|+-+|||+..
T Consensus 337 ~mEvwDv~n~K~i~~~~--a~~tt~~eW~PdGe~flTATTaP-RlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 337 DMEVWDVPNRKLIAKFK--AANTTVFEWSPDGEYFLTATTAP-RLRVDNGIKIWHYT 390 (566)
T ss_pred ceEEEeccchhhccccc--cCCceEEEEcCCCcEEEEEeccc-cEEecCCeEEEEec
Confidence 89999999977765542 22344567899999999987652 01224478999874
No 325
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=92.60 E-value=0.54 Score=50.25 Aligned_cols=70 Identities=4% Similarity=-0.026 Sum_probs=52.7
Q ss_pred CeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCC
Q 046773 336 GLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGG 414 (453)
Q Consensus 336 ~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG 414 (453)
.+.+.+++|+.++++.|..|| ++.+||...+... ++-.+=...-++++|+|..++++++ |.+.+||++-.
T Consensus 261 ~v~~ca~sp~E~kLvlGC~Dg-------SiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCEDG-------SIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred cceEEecCcccceEEEEecCC-------eEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 445667788899999999999 9999999876322 2111111245678889999999998 99999999854
No 326
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=91.52 E-value=0.077 Score=51.55 Aligned_cols=65 Identities=18% Similarity=0.320 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhhhhhhHhHhhhhhHHhhcccchhccCCchhHHHhhhh------ccC---CCCcCcchhHHHHHH
Q 046773 47 EALAAQVAIEASRSVGRLAAAAALANVFQVCSTWRAVSRSDLLWHRLTRR------IWG---RTNLLHATWRDEYIY 114 (453)
Q Consensus 47 ~~l~~~~~~~~~~~~~~~~~~~~l~~~aqv~~~W~~l~~~~~~w~~~~~~------~~~---~~~~~~~~Wk~~y~~ 114 (453)
.-||.|+-..|+. +++|+.+|..+|||-.+-..|++++.+|+++|.= +-. .....+..||..|-.
T Consensus 203 ~dLP~e~vl~Il~---rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~~~l~l~k~~q~dWkqmyf~ 276 (332)
T KOG3926|consen 203 HDLPLECVLNILL---RLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIHTILILSKKGQKDWKQMYFQ 276 (332)
T ss_pred ccchHHHHHHHHH---HccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccccchhHHHHHHH
Confidence 6799999999984 4468999999999999999999999999999951 111 112234679888843
No 327
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=90.53 E-value=16 Score=34.74 Aligned_cols=211 Identities=15% Similarity=0.060 Sum_probs=108.8
Q ss_pred EEEecC---CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecCC
Q 046773 149 CLTLSD---LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDVA 223 (453)
Q Consensus 149 ~lafs~---~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g 223 (453)
+..|++ .++.+--..++|..||..+++... +.-. ...+++++ +..|+.+..++. .+.|..+ +
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~----------~~~G~~~~~~~g~l~v~~~~~~-~~~d~~~-g 70 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP----------GPNGMAFDRPDGRLYVADSGGI-AVVDPDT-G 70 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS----------SEEEEEEECTTSEEEEEETTCE-EEEETTT-T
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC----------CCceEEEEccCCEEEEEEcCce-EEEecCC-C
Confidence 445553 467777788999999999997643 2211 12335554 455666655544 4447766 4
Q ss_pred -cceEEeee-cc-eecCceEEEEeCCCceeeEEEEeeCC--------CeEEEeeCCCCcEEecccccCCcceeeeeeeee
Q 046773 224 -NETRTAHF-GS-VMDDGVLIDFTGCSRYWVGLYAGLAG--------RAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTE 292 (453)
Q Consensus 224 -~~~~~~~~-~~-v~~~~~~v~Fs~dg~~~~~LaSgS~D--------~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~ 292 (453)
+.++.... +. -.....-++++|+|+.+. +-+.. +.|-.++.. ++.- .+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~---t~~~~~~~~~~~~g~v~~~~~~-~~~~---------------~~~~ 131 (246)
T PF08450_consen 71 KVTVLADLPDGGVPFNRPNDVAVDPDGNLYV---TDSGGGGASGIDPGSVYRIDPD-GKVT---------------VVAD 131 (246)
T ss_dssp EEEEEEEEETTCSCTEEEEEEEE-TTS-EEE---EEECCBCTTCGGSEEEEEEETT-SEEE---------------EEEE
T ss_pred cEEEEeeccCCCcccCCCceEEEcCCCCEEE---EecCCCccccccccceEEECCC-CeEE---------------EEec
Confidence 23322221 11 000112378999998642 32222 334455555 4421 0111
Q ss_pred eccceeEEEEcCCce--EEEEc-CCcEEEEECCCCce-EE---EE-eeccCC-eE-EEEEEecCCEEEEEeCCCccccCc
Q 046773 293 FTEFVGRVRVTSHES--AVACT-SSRVITFDLRNQGM-VL---GE-RGYGRG-LY-VTSVDVNAEAYIVVENRELENQNR 362 (453)
Q Consensus 293 h~~~v~~v~~s~~~~--~vas~-d~tIrlWDl~t~~~-~~---~~-~g~~~~-~~-v~~~~~~g~~l~s~s~dg~~~~~~ 362 (453)
.-...|.++|+|++. +++.+ .+.|..+|+..... +. .. ...... .. =.+++.+|+.+++.-..+
T Consensus 132 ~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~------ 205 (246)
T PF08450_consen 132 GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGG------ 205 (246)
T ss_dssp EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTT------
T ss_pred CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCC------
Confidence 124457899998873 34433 36788888864322 11 11 111111 11 145666777766655666
Q ss_pred ceEEEEEcCCCeeEEEEEecCCCeeEEEEe-eCCCeEE
Q 046773 363 RLAIVRRVDTFEEVCRFSLRADRNVNVMGC-MNQGYAL 399 (453)
Q Consensus 363 ~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~-~~~~~ll 399 (453)
.|.+.+.+ |+.+..+..-.....+++|. ++.+.|.
T Consensus 206 -~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~ 241 (246)
T PF08450_consen 206 -RIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLY 241 (246)
T ss_dssp -EEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEE
T ss_pred -EEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEE
Confidence 67777766 77777776553456666663 3445544
No 328
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=89.47 E-value=1.7 Score=46.63 Aligned_cols=65 Identities=17% Similarity=0.260 Sum_probs=47.9
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE--cCCeEEEEeCCCCEEEEEeec
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATLDGDIHVAVIDD 221 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~D~tIkvWd~~~ 221 (453)
|.|.++++ +.|+.|.-|++|.|||..++....+ +. . + ...-++. +|..++.||.-|.+.+||+.-
T Consensus 262 v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka--~--~-----~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 262 VICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KA--E--F-----IPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-ee--c--c-----cceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 56777775 7999999999999999988854433 21 0 0 1122444 677899999999999999865
No 329
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=89.36 E-value=13 Score=31.76 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=20.5
Q ss_pred EEEeCCCceeeEEEEeeCCCeEEEeeCC
Q 046773 241 IDFTGCSRYWVGLYAGLAGRAFHIWDRQ 268 (453)
Q Consensus 241 v~Fs~dg~~~~~LaSgS~D~tIrvWD~~ 268 (453)
.+|..||+- -|..||.|..|||++-+
T Consensus 8 ~d~d~dg~~--eLlvGs~D~~IRvf~~~ 33 (111)
T PF14783_consen 8 FDFDGDGEN--ELLVGSDDFEIRVFKGD 33 (111)
T ss_pred EecCCCCcc--eEEEecCCcEEEEEeCC
Confidence 467777763 58899999999999743
No 330
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.32 E-value=2.1 Score=47.84 Aligned_cols=103 Identities=10% Similarity=0.202 Sum_probs=65.5
Q ss_pred EEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCee-EEEEEecCCCeeEEEEeeCC-CeEEEEeC--C----eEEEE
Q 046773 338 YVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEE-VCRFSLRADRNVNVMGCMNQ-GYALMCVE--G----VIRVW 409 (453)
Q Consensus 338 ~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~-v~~l~~~~~~v~~~~~~~~~-~~lls~s~--~----tIrlW 409 (453)
.+.++++++..++.++.+| +||-++.... ++.++..+..+.......+. .++++.+. . .||||
T Consensus 27 ~isc~~s~~~~vvigt~~G---------~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw 97 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADG---------RVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIW 97 (933)
T ss_pred ceeEEcCCCceEEEeeccc---------cEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEe
Confidence 5678888888999999999 7777776533 36666666542222223344 34444432 3 79999
Q ss_pred ECCC------CeEEEE--ecccCCc------eEEEEecCCCEEEEE-eCCcEEEE
Q 046773 410 EVEG------GEYMYS--FRERIGE------EVIAFVGDDRHVAAS-CGTNIHLW 449 (453)
Q Consensus 410 D~~t------G~~l~t--L~gh~~~------~V~a~s~d~~~lasg-~D~~IklW 449 (453)
|++- -+|+++ +..|..+ .+-+++-|-+.||.| .||.|...
T Consensus 98 ~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~ 152 (933)
T KOG2114|consen 98 DLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICY 152 (933)
T ss_pred cccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEE
Confidence 9963 356633 2333221 123677888999999 99998765
No 331
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.04 E-value=15 Score=36.60 Aligned_cols=31 Identities=10% Similarity=0.298 Sum_probs=20.8
Q ss_pred EEEEeeCCCeEEEEeC--CeEEEEECCCCeEEE
Q 046773 388 NVMGCMNQGYALMCVE--GVIRVWEVEGGEYMY 418 (453)
Q Consensus 388 ~~~~~~~~~~lls~s~--~tIrlWD~~tG~~l~ 418 (453)
+++...+.+.++..|- +..-+||.+||..+.
T Consensus 284 siA~n~~~glV~lTSP~GN~~vi~da~tG~vv~ 316 (366)
T COG3490 284 SIAANRRDGLVALTSPRGNRAVIWDAATGAVVS 316 (366)
T ss_pred heeecccCCeEEEecCCCCeEEEEEcCCCcEEe
Confidence 4444444555554443 788999999998754
No 332
>PRK02888 nitrous-oxide reductase; Validated
Probab=88.64 E-value=19 Score=39.77 Aligned_cols=136 Identities=12% Similarity=0.004 Sum_probs=79.4
Q ss_pred CcEEEEECCCCceEEEE-eeccCCeEEEEEEecCCEEEEEeCCCccc----------------------------c----
Q 046773 314 SRVITFDLRNQGMVLGE-RGYGRGLYVTSVDVNAEAYIVVENRELEN----------------------------Q---- 360 (453)
Q Consensus 314 ~tIrlWDl~t~~~~~~~-~g~~~~~~v~~~~~~g~~l~s~s~dg~~~----------------------------~---- 360 (453)
+.+-+.|.++.+...+. ++.. -.-..++++|..+.+.+.+.+.- .
T Consensus 215 ~~vSvID~etmeV~~qV~Vdgn--pd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~ 292 (635)
T PRK02888 215 SLFTAVDAETMEVAWQVMVDGN--LDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKT 292 (635)
T ss_pred EEEEEEECccceEEEEEEeCCC--cccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEE
Confidence 56778898887655442 2211 11245677777766654322100 0
Q ss_pred -CcceEEEEEcCC----C-eeEEEEEecCCCeeEEEEeeCCCeEEEEeC--CeEEEEECCCCeE------------EEEe
Q 046773 361 -NRRLAIVRRVDT----F-EEVCRFSLRADRNVNVMGCMNQGYALMCVE--GVIRVWEVEGGEY------------MYSF 420 (453)
Q Consensus 361 -~~~~i~Iw~~~t----g-~~v~~l~~~~~~v~~~~~~~~~~~lls~s~--~tIrlWD~~tG~~------------l~tL 420 (453)
+++.+.|.|..+ + +.+..+. -+...-.+.++||+++++.++. .+|-|-|+++-+. ....
T Consensus 293 V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaev 371 (635)
T PRK02888 293 IGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEP 371 (635)
T ss_pred ECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEee
Confidence 112466666665 2 2222222 1222345778999999987775 9999999998542 2222
Q ss_pred cccCCceEEEEecCCCEEEEE-eCCcEEEEecC
Q 046773 421 RERIGEEVIAFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 421 ~gh~~~~V~a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
+--.+..-++|.++|...+|- -|..|-.||++
T Consensus 372 evGlGPLHTaFDg~G~aytslf~dsqv~kwn~~ 404 (635)
T PRK02888 372 ELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIE 404 (635)
T ss_pred ccCCCcceEEECCCCCEEEeEeecceeEEEehH
Confidence 222344234888888766666 88899999975
No 333
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.43 E-value=3.3 Score=46.02 Aligned_cols=140 Identities=10% Similarity=0.034 Sum_probs=91.4
Q ss_pred cceeEEEEcCCceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCe
Q 046773 295 EFVGRVRVTSHESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFE 374 (453)
Q Consensus 295 ~~v~~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~ 374 (453)
+.+.|.+++...++.++.++.|.+.+..-. +.+.-.| .+.+.+|+.++++|.|| ++-|-...+++
T Consensus 40 D~is~~av~~~~~~~GtH~g~v~~~~~~~~--~~~~~~~------s~~~~~Gey~asCS~DG-------kv~I~sl~~~~ 104 (846)
T KOG2066|consen 40 DAISCCAVHDKFFALGTHRGAVYLTTCQGN--PKTNFDH------SSSILEGEYVASCSDDG-------KVVIGSLFTDD 104 (846)
T ss_pred hHHHHHHhhcceeeeccccceEEEEecCCc--ccccccc------cccccCCceEEEecCCC-------cEEEeeccCCc
Confidence 445566677777788888888888876532 1111112 12267799999999999 88888888887
Q ss_pred eEEEEEecCCCeeEEEEeeC-----CCeEEEEeC-CeEEEEECCC-CeEEE-EecccCCceEEEEecCCCEEEEEeCCcE
Q 046773 375 EVCRFSLRADRNVNVMGCMN-----QGYALMCVE-GVIRVWEVEG-GEYMY-SFRERIGEEVIAFVGDDRHVAASCGTNI 446 (453)
Q Consensus 375 ~v~~l~~~~~~v~~~~~~~~-----~~~lls~s~-~tIrlWD~~t-G~~l~-tL~gh~~~~V~a~s~d~~~lasg~D~~I 446 (453)
..+++.++.- +.+++++|+ .++.++++. | +-|..-.= |.... .+..-.|. |.+++=-|..||=++|-.|
T Consensus 105 ~~~~~df~rp-iksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~-I~~i~W~g~lIAWand~Gv 181 (846)
T KOG2066|consen 105 EITQYDFKRP-IKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGP-IHSIKWRGNLIAWANDDGV 181 (846)
T ss_pred cceeEecCCc-ceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccc-eEEEEecCcEEEEecCCCc
Confidence 7777766532 566777775 456666665 5 54442210 11111 23333455 8888888889888877789
Q ss_pred EEEecC
Q 046773 447 HLWDFG 452 (453)
Q Consensus 447 klWDl~ 452 (453)
+++|+.
T Consensus 182 ~vyd~~ 187 (846)
T KOG2066|consen 182 KVYDTP 187 (846)
T ss_pred EEEecc
Confidence 999875
No 334
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=88.19 E-value=48 Score=36.99 Aligned_cols=71 Identities=23% Similarity=0.375 Sum_probs=51.5
Q ss_pred CCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeE---------------EEEecCCCCCccccccceEEEEEEc--CC
Q 046773 143 DGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLH---------------VRTFRPQHSDRLGQFSRAVSGIIIT--DS 203 (453)
Q Consensus 143 d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~---------------~~tl~gh~~~~~~~~s~~V~~i~f~--g~ 203 (453)
..|-..|++++- .+||+|+.||.+|+=.+.|... -+||.||.. +|.-+.+. .+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~--------sV~vvTWNe~~Q 84 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNA--------SVMVVTWNENNQ 84 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcc--------eEEEEEeccccc
Confidence 345577888874 6999999999999998876532 255666543 45545554 45
Q ss_pred eEEEEeCCCCEEEEEeec
Q 046773 204 QLIFATLDGDIHVAVIDD 221 (453)
Q Consensus 204 ~LasgS~D~tIkvWd~~~ 221 (453)
+|-|...+|-|.||-+-.
T Consensus 85 KLTtSDt~GlIiVWmlyk 102 (1189)
T KOG2041|consen 85 KLTTSDTSGLIIVWMLYK 102 (1189)
T ss_pred cccccCCCceEEEEeeec
Confidence 788777889999998755
No 335
>PRK02888 nitrous-oxide reductase; Validated
Probab=88.07 E-value=29 Score=38.28 Aligned_cols=117 Identities=13% Similarity=0.104 Sum_probs=63.5
Q ss_pred CCcEEEEECCC----C-ceEEEE-eecc-CCeEEEEEEecCCEEEEEeC-CCccccCcceEEEEEcCCCee---------
Q 046773 313 SSRVITFDLRN----Q-GMVLGE-RGYG-RGLYVTSVDVNAEAYIVVEN-RELENQNRRLAIVRRVDTFEE--------- 375 (453)
Q Consensus 313 d~tIrlWDl~t----~-~~~~~~-~g~~-~~~~v~~~~~~g~~l~s~s~-dg~~~~~~~~i~Iw~~~tg~~--------- 375 (453)
+++|.+.|.++ + +.+... ++.. |+ ..++|||+.++.++. +. ++.|-|+.+.+.
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVGKsPHG---V~vSPDGkylyVanklS~-------tVSVIDv~k~k~~~~~~~~~~ 364 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVPKNPHG---VNTSPDGKYFIANGKLSP-------TVTVIDVRKLDDLFDGKIKPR 364 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECCCCccc---eEECCCCCEEEEeCCCCC-------cEEEEEChhhhhhhhccCCcc
Confidence 46799999998 3 333322 3321 22 468899998776543 44 999999887432
Q ss_pred ---EEEEEecCCCeeEEEEeeCCCeEEEEe-CCeEEEEECCC----------CeEEEEecccC--CceEE-----EEecC
Q 046773 376 ---VCRFSLRADRNVNVMGCMNQGYALMCV-EGVIRVWEVEG----------GEYMYSFRERI--GEEVI-----AFVGD 434 (453)
Q Consensus 376 ---v~~l~~~~~~v~~~~~~~~~~~lls~s-~~tIrlWD~~t----------G~~l~tL~gh~--~~~V~-----a~s~d 434 (453)
+.+... ..+-....|..+|....+.- +..|-.||+++ ...+..+.-|- +. .. ...||
T Consensus 365 ~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh-~~~~~g~t~~~d 442 (635)
T PRK02888 365 DAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGH-NHASMGETKEAD 442 (635)
T ss_pred ceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccce-eeecCCCcCCCC
Confidence 222221 11112334544443222222 37777799987 23444443331 11 11 23589
Q ss_pred CCEEEEE
Q 046773 435 DRHVAAS 441 (453)
Q Consensus 435 ~~~lasg 441 (453)
|++|++.
T Consensus 443 gk~l~~~ 449 (635)
T PRK02888 443 GKWLVSL 449 (635)
T ss_pred CCEEEEc
Confidence 9988875
No 336
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.70 E-value=16 Score=39.26 Aligned_cols=145 Identities=12% Similarity=0.041 Sum_probs=78.6
Q ss_pred EEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEcCCcEEEEECCCCce-EEE-E
Q 046773 253 LYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSSRVITFDLRNQGM-VLG-E 330 (453)
Q Consensus 253 LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~d~tIrlWDl~t~~~-~~~-~ 330 (453)
|.++..-..+.=-|+++|++..-..+.++- .+...+..--.-++.+..++++=++..|.-||++-.+. .+. .
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~di------~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDDI------NMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCCc------ceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 445555566666788888854311111110 01111111111233445567877888999999985433 121 2
Q ss_pred eecc--CCeEEEEEEecCC-EEEEEeCCCccccCcceEEEEEcCCCee-EEEEEecCCCeeEEEEeeCCCeEEEEeCCeE
Q 046773 331 RGYG--RGLYVTSVDVNAE-AYIVVENRELENQNRRLAIVRRVDTFEE-VCRFSLRADRNVNVMGCMNQGYALMCVEGVI 406 (453)
Q Consensus 331 ~g~~--~~~~v~~~~~~g~-~l~s~s~dg~~~~~~~~i~Iw~~~tg~~-v~~l~~~~~~v~~~~~~~~~~~lls~s~~tI 406 (453)
.+|. ....-.|+.-.++ .+|.||.+| .||++|- ++.. -..|.+-++.+..+-.+.+|++++......+
T Consensus 423 q~kqy~~k~nFsc~aTT~sG~IvvgS~~G-------dIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyL 494 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESGYIVVGSLKG-------DIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYL 494 (644)
T ss_pred eccccccccccceeeecCCceEEEeecCC-------cEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccEE
Confidence 2221 1222355554444 578889999 9999986 4322 1223333455777777778888876655555
Q ss_pred EEEEC
Q 046773 407 RVWEV 411 (453)
Q Consensus 407 rlWD~ 411 (453)
-|=|+
T Consensus 495 lLi~t 499 (644)
T KOG2395|consen 495 LLIDT 499 (644)
T ss_pred EEEEE
Confidence 55554
No 337
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=87.65 E-value=0.82 Score=49.53 Aligned_cols=29 Identities=24% Similarity=0.275 Sum_probs=26.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEecC
Q 046773 154 DLYLACGFADGAVRLFDLTTRLHVRTFRP 182 (453)
Q Consensus 154 ~~~LaSGS~D~TIrlWD~~tg~~~~tl~g 182 (453)
.++|++-+.|+++||||+.|++|++++.-
T Consensus 230 ~~~l~tl~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 230 DTFLFTLSRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp TTEEEEEETTSEEEEEETTTTCEEEEEET
T ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEecc
Confidence 47999999999999999999999888743
No 338
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=87.61 E-value=1.2 Score=31.78 Aligned_cols=30 Identities=23% Similarity=0.473 Sum_probs=26.1
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCeEE
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRLHV 177 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~ 177 (453)
|.+++|+| ++||.|+.|+.|-|+.+ +++.+
T Consensus 14 v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 14 VSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred EEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 78999998 69999999999999998 66543
No 339
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=86.39 E-value=3.5 Score=43.42 Aligned_cols=118 Identities=11% Similarity=0.080 Sum_probs=68.1
Q ss_pred CcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEE-eCCCccccCcceEEEE--EcCCCeeEEEEEecCCCeeEEE
Q 046773 314 SRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVV-ENRELENQNRRLAIVR--RVDTFEEVCRFSLRADRNVNVM 390 (453)
Q Consensus 314 ~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~-s~dg~~~~~~~~i~Iw--~~~tg~~v~~l~~~~~~v~~~~ 390 (453)
..|.++|+.+++........+ ......|+|+|.+++.. ..++ ...|| |+.+.+ +..++-....-..-.
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g-~~~~P~fspDG~~l~f~~~rdg-------~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps 288 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNG-NNGAPAFSPDGSKLAFSSSRDG-------SPDIYLMDLDGKN-LPRLTNGFGINTSPS 288 (425)
T ss_pred ceEEEEeccCCccceeeccCC-ccCCccCCCCCCEEEEEECCCC-------CccEEEEcCCCCc-ceecccCCccccCcc
Confidence 358999999985433322111 23457899999887654 4455 44555 555544 222332221112345
Q ss_pred EeeCCCeEEEEeC--C--eEEEEECCCCeE-EEEecccCCceEEEEecCCCEEEEE
Q 046773 391 GCMNQGYALMCVE--G--VIRVWEVEGGEY-MYSFRERIGEEVIAFVGDDRHVAAS 441 (453)
Q Consensus 391 ~~~~~~~lls~s~--~--tIrlWD~~tG~~-l~tL~gh~~~~V~a~s~d~~~lasg 441 (453)
++|+|++++-.++ | .|-+-|++.+.. ..|+.+-... .-.++|||++|+.-
T Consensus 289 ~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~-~p~~SpdG~~i~~~ 343 (425)
T COG0823 289 WSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNS-NPVWSPDGDKIVFE 343 (425)
T ss_pred CCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCc-CccCCCCCCEEEEE
Confidence 6789999987776 4 555567776543 3344333222 22678999998754
No 340
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=86.23 E-value=13 Score=42.14 Aligned_cols=139 Identities=9% Similarity=0.066 Sum_probs=83.4
Q ss_pred EEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEE-------EEcCCceEEEEcCCcEEEEECCCCc
Q 046773 253 LYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRV-------RVTSHESAVACTSSRVITFDLRNQG 325 (453)
Q Consensus 253 LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v-------~~s~~~~~vas~d~tIrlWDl~t~~ 325 (453)
|......+.+.--|+++|++..- |..-. ..+|..+ ++.+..++++=++..+-.||++-.+
T Consensus 497 l~~~~~~~~ly~mDLe~GKVV~e-----------W~~~~--~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~ 563 (794)
T PF08553_consen 497 LLDPNNPNKLYKMDLERGKVVEE-----------WKVHD--DIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG 563 (794)
T ss_pred eecCCCCCceEEEecCCCcEEEE-----------eecCC--CcceeEecccccccccCCCceEEEECCCceEEeccCCCC
Confidence 34444556777778888885421 32110 0112222 2345667888888899999998643
Q ss_pred -eEEEEeec--cCCeEEEEEEecCC-EEEEEeCCCccccCcceEEEEEcCCCee-EEEEEecCCCeeEEEEeeCCCeEEE
Q 046773 326 -MVLGERGY--GRGLYVTSVDVNAE-AYIVVENRELENQNRRLAIVRRVDTFEE-VCRFSLRADRNVNVMGCMNQGYALM 400 (453)
Q Consensus 326 -~~~~~~g~--~~~~~v~~~~~~g~-~l~s~s~dg~~~~~~~~i~Iw~~~tg~~-v~~l~~~~~~v~~~~~~~~~~~lls 400 (453)
.+....++ .......|++-+++ .+|+||.+| .||++|- .|.. -..|.+-++.|..+-.+.||+++++
T Consensus 564 ~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G-------~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwila 635 (794)
T PF08553_consen 564 NKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKG-------DIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILA 635 (794)
T ss_pred CceeeccccccccCCCceEEEecCCceEEEEeCCC-------cEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEE
Confidence 22221111 12233456655554 578899999 9999984 3322 1223333455888888889999987
Q ss_pred EeCCeEEEEECC
Q 046773 401 CVEGVIRVWEVE 412 (453)
Q Consensus 401 ~s~~tIrlWD~~ 412 (453)
....-+-|.|+.
T Consensus 636 Tc~tyLlLi~t~ 647 (794)
T PF08553_consen 636 TCKTYLLLIDTL 647 (794)
T ss_pred eecceEEEEEEe
Confidence 777777777763
No 341
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=86.12 E-value=17 Score=41.37 Aligned_cols=141 Identities=13% Similarity=0.062 Sum_probs=87.1
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc-------CCeEEEEeCCCCEEEEEeecCCcceEE-
Q 046773 157 LACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT-------DSQLIFATLDGDIHVAVIDDVANETRT- 228 (453)
Q Consensus 157 LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~-------g~~LasgS~D~tIkvWd~~~~g~~~~~- 228 (453)
|......+.|.--|+++|+-+..+.-|... .|..++++ +.....|=.++.+.-||..-.|.....
T Consensus 497 l~~~~~~~~ly~mDLe~GKVV~eW~~~~~~-------~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~ 569 (794)
T PF08553_consen 497 LLDPNNPNKLYKMDLERGKVVEEWKVHDDI-------PVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS 569 (794)
T ss_pred eecCCCCCceEEEecCCCcEEEEeecCCCc-------ceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeec
Confidence 445556688888999999999998865431 24555543 445566777788888886543311111
Q ss_pred -eeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce
Q 046773 229 -AHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES 307 (453)
Q Consensus 229 -~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~ 307 (453)
.+.-.-..+-..++-+.+|. ||.||.++-|||+|- .|.... -.|.+..+||..|.++.++.
T Consensus 570 ~~k~Y~~~~~Fs~~aTt~~G~----iavgs~~G~IRLyd~-~g~~AK-------------T~lp~lG~pI~~iDvt~DGk 631 (794)
T PF08553_consen 570 QSKQYSSKNNFSCFATTEDGY----IAVGSNKGDIRLYDR-LGKRAK-------------TALPGLGDPIIGIDVTADGK 631 (794)
T ss_pred cccccccCCCceEEEecCCce----EEEEeCCCcEEeecc-cchhhh-------------hcCCCCCCCeeEEEecCCCc
Confidence 11100001112356677776 789999999999994 333110 01345668899999887774
Q ss_pred -EEEEcCCcEEEEECC
Q 046773 308 -AVACTSSRVITFDLR 322 (453)
Q Consensus 308 -~vas~d~tIrlWDl~ 322 (453)
++|..+.-+-|.|..
T Consensus 632 wilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 632 WILATCKTYLLLIDTL 647 (794)
T ss_pred EEEEeecceEEEEEEe
Confidence 566556567777753
No 342
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=85.37 E-value=51 Score=34.44 Aligned_cols=228 Identities=14% Similarity=0.132 Sum_probs=104.9
Q ss_pred hhhhhcccccCceeeEE-eeCCCCCCCCCCeEEEEEEecC-CEEEEEeCCCcEEEEECCCCeEEEEe--cCCCCCccccc
Q 046773 116 HRTAQNFRTRRYTHFNL-YFDPSDVDNPDGLTCRCLTLSD-LYLACGFADGAVRLFDLTTRLHVRTF--RPQHSDRLGQF 191 (453)
Q Consensus 116 ~~~~~nw~~g~~~~~~~-~~~~~gh~~~d~v~v~~lafs~-~~LaSGS~D~TIrlWD~~tg~~~~tl--~gh~~~~~~~~ 191 (453)
++++.+-+.| +.|.++ +.. ..+ |++|+.|+ -++|-|..|+++-|-|++...-+.+- ..|... ...
T Consensus 66 ~r~~~~~~~g-f~P~~l~~~~----~g~----vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~--~~~ 134 (395)
T PF08596_consen 66 DRAPPSLKEG-FLPLTLLDAK----QGP----VTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLS--KSS 134 (395)
T ss_dssp GG--TT-SEE-EEEEEEE-------S-S----EEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T---SS-
T ss_pred hhCCcccccc-cCchhheecc----CCc----EeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccc--ccc
Confidence 5566666677 455544 321 213 89999987 59999999999999999888876552 110000 001
Q ss_pred cceEEEEEEc-----CC-----eEEEEeCCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEe---eC
Q 046773 192 SRAVSGIIIT-----DS-----QLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAG---LA 258 (453)
Q Consensus 192 s~~V~~i~f~-----g~-----~LasgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSg---S~ 258 (453)
+..|.+|.|. ++ .|..|...|.+.++.+.- .+.|++.+.++.. ..
T Consensus 135 ~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp----------------------~~~g~f~v~~~~~~~~~~ 192 (395)
T PF08596_consen 135 SSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILP----------------------SSNGRFSVQFAGATTNHD 192 (395)
T ss_dssp ---EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-----------------------GGG-EEEEEEEEE--SS
T ss_pred ccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEec----------------------CCCCceEEEEeeccccCC
Confidence 2345666653 21 344555556665554431 1111111111111 11
Q ss_pred CC--eEEEeeCCCCc-EE-ecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEcCCcEEEEECCCCceEEEEeecc
Q 046773 259 GR--AFHIWDRQAEE-VF-VGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSSRVITFDLRNQGMVLGERGYG 334 (453)
Q Consensus 259 D~--tIrvWD~~tg~-~~-~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~ 334 (453)
+. .|...|.++|+ +. .+ ..+.+.... +. -.+.++.++...||+..+-+.++.+... .
T Consensus 193 ~~i~~I~~i~~~~G~~a~At~------------~~~~~l~~g---~~--i~g~vVvvSe~~irv~~~~~~k~~~K~~--~ 253 (395)
T PF08596_consen 193 SPILSIIPINADTGESALATI------------SAMQGLSKG---IS--IPGYVVVVSESDIRVFKPPKSKGAHKSF--D 253 (395)
T ss_dssp ----EEEEEETTT--B-B-BH------------HHHHGGGGT---------EEEEEE-SSEEEEE-TT---EEEEE---S
T ss_pred CceEEEEEEECCCCCcccCch------------hHhhccccC---CC--cCcEEEEEcccceEEEeCCCCcccceee--c
Confidence 11 24445777776 21 10 001111111 00 1246777888899999998877665532 1
Q ss_pred CCeEEE--EEE-----ecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCC----CeeEEEEeeCCCeEEEEe
Q 046773 335 RGLYVT--SVD-----VNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRAD----RNVNVMGCMNQGYALMCV 402 (453)
Q Consensus 335 ~~~~v~--~~~-----~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~----~v~~~~~~~~~~~lls~s 402 (453)
....+. ++- ..+..|+....+| .+++..++.=+++..+..... ......++.+|..+.-.+
T Consensus 254 ~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G-------~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~g 325 (395)
T PF08596_consen 254 DPFLCSSASVVPTISRNGGYCLVCLFNNG-------SIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTG 325 (395)
T ss_dssp S-EEEEEEEEEEEE-EEEEEEEEEEETTS-------EEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-S
T ss_pred cccccceEEEEeecccCCceEEEEEECCC-------cEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeC
Confidence 112222 221 2345677778888 999999998777777665321 122344455555444443
No 343
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=85.36 E-value=48 Score=34.17 Aligned_cols=194 Identities=7% Similarity=0.003 Sum_probs=97.1
Q ss_pred EEEeCCCceeeEEEE--eeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEEcC---
Q 046773 241 IDFTGCSRYWVGLYA--GLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACTS--- 313 (453)
Q Consensus 241 v~Fs~dg~~~~~LaS--gS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d--- 313 (453)
..+||||++++.-.+ |+.-.+|+|.|+++|+.+.. .+.. +.. ..+.+.+++ ++-...+
T Consensus 129 ~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-------------~i~~-~~~-~~~~W~~d~~~~~y~~~~~~~ 193 (414)
T PF02897_consen 129 FSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-------------GIEN-PKF-SSVSWSDDGKGFFYTRFDEDQ 193 (414)
T ss_dssp EEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-------------EEEE-EES-EEEEECTTSSEEEEEECSTTT
T ss_pred eeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-------------cccc-ccc-ceEEEeCCCCEEEEEEeCccc
Confidence 578899987533222 33446799999999985421 0111 111 126676663 3333322
Q ss_pred --------CcEEEEECCCCce--EEEEeeccCC--eEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCC----eeEE
Q 046773 314 --------SRVITFDLRNQGM--VLGERGYGRG--LYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTF----EEVC 377 (453)
Q Consensus 314 --------~tIrlWDl~t~~~--~~~~~g~~~~--~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg----~~v~ 377 (453)
..|++|.+.+... .....+.... ..-...+.+++.++..+..+.+ ...+.+-+...+ ....
T Consensus 194 ~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~---~s~v~~~d~~~~~~~~~~~~ 270 (414)
T PF02897_consen 194 RTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTS---ESEVYLLDLDDGGSPDAKPK 270 (414)
T ss_dssp SS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSS---EEEEEEEECCCTTTSS-SEE
T ss_pred ccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcccc---CCeEEEEeccccCCCcCCcE
Confidence 2389999988732 1222222222 2234567888887766655511 024445555553 2344
Q ss_pred EEEecCCCeeEEEEeeCCCeEEEEeC----CeEEEEECCCCeE---EEEecccCCc-eEEEEecCCCEEEE-E-eCC--c
Q 046773 378 RFSLRADRNVNVMGCMNQGYALMCVE----GVIRVWEVEGGEY---MYSFRERIGE-EVIAFVGDDRHVAA-S-CGT--N 445 (453)
Q Consensus 378 ~l~~~~~~v~~~~~~~~~~~lls~s~----~tIrlWD~~tG~~---l~tL~gh~~~-~V~a~s~d~~~las-g-~D~--~ 445 (453)
.+..+...+...+.+..+...+.+.. +.|--=++.+... ...+..|... .+..+...+.+|+. - .++ .
T Consensus 271 ~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~ 350 (414)
T PF02897_consen 271 LLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSR 350 (414)
T ss_dssp EEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEE
T ss_pred EEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccE
Confidence 44444445555555555444444432 4444457776542 2355556553 24567766666554 4 554 5
Q ss_pred EEEEecC
Q 046773 446 IHLWDFG 452 (453)
Q Consensus 446 IklWDl~ 452 (453)
|+++|+.
T Consensus 351 l~v~~~~ 357 (414)
T PF02897_consen 351 LRVYDLD 357 (414)
T ss_dssp EEEEETT
T ss_pred EEEEECC
Confidence 6777764
No 344
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.04 E-value=76 Score=36.12 Aligned_cols=208 Identities=11% Similarity=0.118 Sum_probs=94.2
Q ss_pred eEEEEEEcCCeEEEEeCCCCEEEEEeecCC---cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCC-----eEEEe
Q 046773 194 AVSGIIITDSQLIFATLDGDIHVAVIDDVA---NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGR-----AFHIW 265 (453)
Q Consensus 194 ~V~~i~f~g~~LasgS~D~tIkvWd~~~~g---~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~-----tIrvW 265 (453)
.++++..++..+|.|+.|+.|-+ ++. + ++-++.+..++.. .+ ..-+++ ..|+|-..|. .++||
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~--Ln~-s~~~~~~fqa~~~siv~---~L-~~~~~~--~~L~sv~Ed~~~np~llkiw 97 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVI--LNS-SFQLIRGFQAYEQSIVQ---FL-YILNKQ--NFLFSVGEDEQGNPVLLKIW 97 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEE--ecc-cceeeehheecchhhhh---Hh-hcccCc--eEEEEEeecCCCCceEEEEe
Confidence 34555555667888999886543 333 2 1223333222110 00 011111 1255554443 58999
Q ss_pred eCCCCc------EEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEE--cCCcEEEE--ECCCCceEEEEeeccC
Q 046773 266 DRQAEE------VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVAC--TSSRVITF--DLRNQGMVLGERGYGR 335 (453)
Q Consensus 266 D~~tg~------~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas--~d~tIrlW--Dl~t~~~~~~~~g~~~ 335 (453)
|++.-+ ++.-|.+.. +....-+.|+.+++++.+-..+++ .+|.|-+. |+..-+-.+..-.|..
T Consensus 98 ~lek~~~n~sP~c~~~~ri~~-------~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~ 170 (933)
T KOG2114|consen 98 DLEKVDKNNSPQCLYEHRIFT-------IKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRG 170 (933)
T ss_pred cccccCCCCCcceeeeeeeec-------cCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccC
Confidence 987532 221111100 000012356677777765443443 46766554 2211000011111222
Q ss_pred CeEEEEEEe--cCCE-EEEEeCCCccccCcceEEEEEcCCCee--EEEEEecCCCeeEEEEeeCCCeEEEEeCCeEEEEE
Q 046773 336 GLYVTSVDV--NAEA-YIVVENRELENQNRRLAIVRRVDTFEE--VCRFSLRADRNVNVMGCMNQGYALMCVEGVIRVWE 410 (453)
Q Consensus 336 ~~~v~~~~~--~g~~-l~s~s~dg~~~~~~~~i~Iw~~~tg~~--v~~l~~~~~~v~~~~~~~~~~~lls~s~~tIrlWD 410 (453)
..+|+.+.+ ++.. +..++- . .|.++.+. |+. ++.+.-++-.+....+++....++.+++..|..+|
T Consensus 171 ~~pITgL~~~~d~~s~lFv~Tt-~-------~V~~y~l~-gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~ 241 (933)
T KOG2114|consen 171 KEPITGLALRSDGKSVLFVATT-E-------QVMLYSLS-GRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYD 241 (933)
T ss_pred CCCceeeEEecCCceeEEEEec-c-------eeEEEEec-CCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEc
Confidence 334555433 3333 222221 1 34555554 322 33343333333444444332335545558899999
Q ss_pred CCCCeEEEEec-ccCCc
Q 046773 411 VEGGEYMYSFR-ERIGE 426 (453)
Q Consensus 411 ~~tG~~l~tL~-gh~~~ 426 (453)
...-+...+|. ||.-.
T Consensus 242 sd~~~~cfaf~~g~kk~ 258 (933)
T KOG2114|consen 242 SDGRGPCFAFEVGEKKE 258 (933)
T ss_pred CCCcceeeeecCCCeEE
Confidence 98766667887 77544
No 345
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.95 E-value=2.4 Score=43.67 Aligned_cols=70 Identities=10% Similarity=0.014 Sum_probs=51.0
Q ss_pred ecCCCeeEEEEeeCCCe-EEEEeC-CeEEEEECCCCeEEEEecccCCceEEEE--ecCCC-EEEEE-eCCcEEEEecC
Q 046773 381 LRADRNVNVMGCMNQGY-ALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVIAF--VGDDR-HVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 381 ~~~~~v~~~~~~~~~~~-lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~a~--s~d~~-~lasg-~D~~IklWDl~ 452 (453)
.+...++.++++|...- +..++- ++|+|-|++|..+..++..| .. +|++ .-|.. .|-.| ..|+|.|+|+.
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~-~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQ-IWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CC-ceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 34444778888886553 444444 99999999999888888767 44 7844 44554 67788 99999999974
No 346
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=83.88 E-value=8.5 Score=42.53 Aligned_cols=71 Identities=14% Similarity=0.098 Sum_probs=46.7
Q ss_pred EEEeeCCCeEEEeeCCCCc---EEecccccCCcceeeeeeeeeeccceeEEEEcCCce-EEEEc-CCcEEEEECCCCc
Q 046773 253 LYAGLAGRAFHIWDRQAEE---VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES-AVACT-SSRVITFDLRNQG 325 (453)
Q Consensus 253 LaSgS~D~tIrvWD~~tg~---~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~-~vas~-d~tIrlWDl~t~~ 325 (453)
+|.|+.|+-+||--+.|.. ...| |..+.....=++|.||...|.-|..+.+.. +..|+ ++-|.+|=+-.|.
T Consensus 29 IAcgG~dGlLKVlKl~t~t~d~~~~g--laa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgs 104 (1189)
T KOG2041|consen 29 IACGGADGLLKVLKLGTDTTDLNKSG--LAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGS 104 (1189)
T ss_pred EEeccccceeEEEEccccCCcccccc--cccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeeccc
Confidence 7889999999998887755 1222 212222111257899999988888875443 33333 4789999887664
No 347
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=83.42 E-value=51 Score=32.85 Aligned_cols=127 Identities=12% Similarity=0.087 Sum_probs=68.1
Q ss_pred CcEEEEECCCC----ceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCC--Cee
Q 046773 314 SRVITFDLRNQ----GMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRAD--RNV 387 (453)
Q Consensus 314 ~tIrlWDl~t~----~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~--~v~ 387 (453)
|.|.+.++... ..+....-+.....|.++..-++.++.+ ... .+.|++++..+.+........ .+.
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~-~g~-------~l~v~~l~~~~~l~~~~~~~~~~~i~ 133 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVA-VGN-------KLYVYDLDNSKTLLKKAFYDSPFYIT 133 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEE-ETT-------EEEEEEEETTSSEEEEEEE-BSSSEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEe-ecC-------EEEEEEccCcccchhhheecceEEEE
Confidence 67999999873 1222221112234678887767776554 445 889999987763333333222 233
Q ss_pred EEEEeeCCCeEEEEeC-CeEEEE--ECCCCeEEEEecc-cCCceEEE--EecCCCEEEEE-eCCcEEEEec
Q 046773 388 NVMGCMNQGYALMCVE-GVIRVW--EVEGGEYMYSFRE-RIGEEVIA--FVGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 388 ~~~~~~~~~~lls~s~-~tIrlW--D~~tG~~l~tL~g-h~~~~V~a--~s~d~~~lasg-~D~~IklWDl 451 (453)
++.. .+.+++.+.. ..|.+. |-+ ++.+..+.. .....+.+ |-+|+..++.+ .++.|.++..
T Consensus 134 sl~~--~~~~I~vgD~~~sv~~~~~~~~-~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~ 201 (321)
T PF03178_consen 134 SLSV--FKNYILVGDAMKSVSLLRYDEE-NNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRY 201 (321)
T ss_dssp EEEE--ETTEEEEEESSSSEEEEEEETT-TE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE
T ss_pred EEec--cccEEEEEEcccCEEEEEEEcc-CCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEE
Confidence 3332 3456665544 555555 542 443443322 11222553 44476777777 8999988764
No 348
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=83.09 E-value=3.2 Score=39.71 Aligned_cols=66 Identities=12% Similarity=0.029 Sum_probs=39.3
Q ss_pred CCeEEEEeCCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc
Q 046773 202 DSQLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE 271 (453)
Q Consensus 202 g~~LasgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~ 271 (453)
++.|+-|+.|+.|.+|+++..|.+.-+...+. +. ...-=|.++--....++..|+.||.|+++-.+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~---e~-i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k 135 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGE---ES-IDLGIPNGRDSSLGCVGAQDGRIRACNIKPNK 135 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhccc---cc-ceeccccccccceeEEeccCCceeeeccccCc
Confidence 56789999999999999885441211111110 00 00011222321135678899999999998877
No 349
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=83.05 E-value=7.6 Score=39.56 Aligned_cols=87 Identities=7% Similarity=-0.027 Sum_probs=54.3
Q ss_pred eEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeCCeEEEEECCCCeEEE-Eecc-------cCCc---------
Q 046773 364 LAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYMY-SFRE-------RIGE--------- 426 (453)
Q Consensus 364 ~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~~tIrlWD~~tG~~l~-tL~g-------h~~~--------- 426 (453)
..-|+|+++++....... ...+....++|++.+++-..++.|.+.++.+++..+ |..| -.++
T Consensus 24 ~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~ 102 (353)
T PF00930_consen 24 DYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDR 102 (353)
T ss_dssp EEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSS
T ss_pred eEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceecccccccc
Confidence 667888888754332222 334677889999999888888999999998885543 3333 0110
Q ss_pred -eEEEEecCCCEEEEE--eCCcEEEEec
Q 046773 427 -EVIAFVGDDRHVAAS--CGTNIHLWDF 451 (453)
Q Consensus 427 -~V~a~s~d~~~lasg--~D~~IklWDl 451 (453)
...-+|||+++||-. .|..|+.+.+
T Consensus 103 ~~~~~WSpd~~~la~~~~d~~~v~~~~~ 130 (353)
T PF00930_consen 103 RSAVWWSPDSKYLAFLRFDEREVPEYPL 130 (353)
T ss_dssp SBSEEE-TTSSEEEEEEEE-TTS-EEEE
T ss_pred ccceEECCCCCEEEEEEECCcCCceEEe
Confidence 011468999999876 7777776654
No 350
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.16 E-value=4.4 Score=46.55 Aligned_cols=70 Identities=16% Similarity=0.293 Sum_probs=43.7
Q ss_pred EEEcCCeEEEEeCCCCEEEEEeecCCcceEEeeecceecCc-eEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEE
Q 046773 198 IIITDSQLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDG-VLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVF 273 (453)
Q Consensus 198 i~f~g~~LasgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~-~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~ 273 (453)
.+.-+-.++.|+.-+.+-.-|+.+ .+.+ .|.+.-.... ..++|+.||+. |+.|-.++-|.+||+.++..+
T Consensus 95 ~a~~~~~ivi~Ts~ghvl~~d~~~-nL~~--~~~ne~v~~~Vtsvafn~dg~~---l~~G~~~G~V~v~D~~~~k~l 165 (1206)
T KOG2079|consen 95 SAIVVVPIVIGTSHGHVLLSDMTG-NLGP--LHQNERVQGPVTSVAFNQDGSL---LLAGLGDGHVTVWDMHRAKIL 165 (1206)
T ss_pred eeeeeeeEEEEcCchhhhhhhhhc-ccch--hhcCCccCCcceeeEecCCCce---eccccCCCcEEEEEccCCcce
Confidence 333344566676666666555543 1111 2322111112 25999999996 778889999999999998744
No 351
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=80.84 E-value=0.51 Score=50.99 Aligned_cols=180 Identities=9% Similarity=0.032 Sum_probs=90.8
Q ss_pred EEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCC--ceEEEEc-----CCcEEEEECCCCc
Q 046773 253 LYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSH--ESAVACT-----SSRVITFDLRNQG 325 (453)
Q Consensus 253 LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~--~~~vas~-----d~tIrlWDl~t~~ 325 (453)
|+.|+.++.|-+-.++... .. +|.+..++..+++++++++- ..++++- |..++|||+.++-
T Consensus 73 lavG~atG~I~l~s~r~~h----------dS--s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~l 140 (783)
T KOG1008|consen 73 LAVGSATGNISLLSVRHPH----------DS--SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLL 140 (783)
T ss_pred hhhccccCceEEeecCCcc----------cc--cceecccccccccccccccccHHHHHhhhhhhcccCCccceeccccc
Confidence 6788888888886664432 00 13344566677888888753 2344443 3579999999861
Q ss_pred e-EEE---E-eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEee-CCCeEE
Q 046773 326 M-VLG---E-RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCM-NQGYAL 399 (453)
Q Consensus 326 ~-~~~---~-~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~-~~~~ll 399 (453)
. .+. + .+...+..+.|..-+-..+.+|.... .++|.|... .+.+...+....++.+...| .+.|+.
T Consensus 141 tvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr-------~~~ifdlRq-s~~~~~svnTk~vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 141 TVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSR-------SVHIFDLRQ-SLDSVSSVNTKYVQGITVDPFSPNYFC 212 (783)
T ss_pred CCCccccccccccccCccccccccCcchhhcccccc-------hhhhhhhhh-hhhhhhhhhhhhcccceecCCCCCcee
Confidence 1 110 1 11111222334332222333344333 555655431 01111112223355566666 677877
Q ss_pred EEeCCeEEEEECCC--CeEEEEecccCCc---eEE--EEecC--CCEEEEE-eCCcEEEEecC
Q 046773 400 MCVEGVIRVWEVEG--GEYMYSFRERIGE---EVI--AFVGD--DRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 400 s~s~~tIrlWD~~t--G~~l~tL~gh~~~---~V~--a~s~d--~~~lasg-~D~~IklWDl~ 452 (453)
+..++.|-+||..- -..++++...... .+. +..|- |...+.. .-++|+++|+.
T Consensus 213 s~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 213 SNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 66679999999421 1223322211110 133 33453 3333344 66899999875
No 352
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=79.83 E-value=81 Score=32.82 Aligned_cols=152 Identities=13% Similarity=0.066 Sum_probs=63.8
Q ss_pred eeccceeEEEEcCCc--eEEEEcC----C-cEEEEECCCCceE-EEEeeccCCeEEE--EEEecCCEEEEEeC-CCcccc
Q 046773 292 EFTEFVGRVRVTSHE--SAVACTS----S-RVITFDLRNQGMV-LGERGYGRGLYVT--SVDVNAEAYIVVEN-RELENQ 360 (453)
Q Consensus 292 ~h~~~v~~v~~s~~~--~~vas~d----~-tIrlWDl~t~~~~-~~~~g~~~~~~v~--~~~~~g~~l~s~s~-dg~~~~ 360 (453)
.-+.|++.++|+|.. ++.=|.. . .-|||=+.+-+.. ....-+.....+. -+.++|..+.-.+. .+ +
T Consensus 185 ~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~---~ 261 (386)
T PF14583_consen 185 EDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPG---G 261 (386)
T ss_dssp EESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETT---T
T ss_pred ecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCC---C
Confidence 345788999999743 4444643 2 3478866553221 1111122222221 26778876544332 11 1
Q ss_pred CcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEE-EeC----------------CeEEEEECCCCeEEE-----
Q 046773 361 NRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALM-CVE----------------GVIRVWEVEGGEYMY----- 418 (453)
Q Consensus 361 ~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls-~s~----------------~tIrlWD~~tG~~l~----- 418 (453)
.+..|.=.+.+|++....... | +...+..++++..++. +++ --|.|+++++++...
T Consensus 262 ~~~~i~~~d~~t~~~~~~~~~-p-~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~ 339 (386)
T PF14583_consen 262 QDFWIAGYDPDTGERRRLMEM-P-WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHD 339 (386)
T ss_dssp --EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE--
T ss_pred CceEEEeeCCCCCCceEEEeC-C-ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeecc
Confidence 222444456677654332222 2 1112223334443331 111 156788998876521
Q ss_pred ----EecccC--CceEE-EEecCCCEEE-EE-eCCcEEEE
Q 046773 419 ----SFRERI--GEEVI-AFVGDDRHVA-AS-CGTNIHLW 449 (453)
Q Consensus 419 ----tL~gh~--~~~V~-a~s~d~~~la-sg-~D~~IklW 449 (453)
.+.++. .. .+ +|+||+++|+ ++ .+|...|+
T Consensus 340 ~sw~v~~~~~q~~h-Php~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 340 TSWKVLDGDRQVTH-PHPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp -----BTTBSSTT-----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred CcceeecCCCccCC-CCCccCCCCCEEEEECCCCCCccEE
Confidence 122221 12 33 8999999876 44 56655554
No 353
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=79.73 E-value=82 Score=33.45 Aligned_cols=135 Identities=13% Similarity=0.134 Sum_probs=67.0
Q ss_pred ceeEEEEcCCce-EEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEE-EEcCCC
Q 046773 296 FVGRVRVTSHES-AVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIV-RRVDTF 373 (453)
Q Consensus 296 ~v~~v~~s~~~~-~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~I-w~~~tg 373 (453)
+...+.++|++. ++.++++.--|......+- . ..|.+.. .++.. .+.+++-.... +|+| .+.+..
T Consensus 34 ~p~~ls~npngr~v~V~g~geY~iyt~~~~r~-k-~~G~g~~---~vw~~-~n~yAv~~~~~-------~I~I~kn~~~~ 100 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVCGDGEYEIYTALAWRN-K-AFGSGLS---FVWSS-RNRYAVLESSS-------TIKIYKNFKNE 100 (443)
T ss_dssp --SEEEE-TTSSEEEEEETTEEEEEETTTTEE-E-EEEE-SE---EEE-T-SSEEEEE-TTS--------EEEEETTEE-
T ss_pred CCeeEEECCCCCEEEEEcCCEEEEEEccCCcc-c-ccCceeE---EEEec-CccEEEEECCC-------eEEEEEcCccc
Confidence 345688888775 4448888877776433211 1 1233211 23333 45677766666 8888 454321
Q ss_pred eeEEEEEecCCCeeEEEEeeCCCeEEEEeCCeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEEeCCcEEEEec
Q 046773 374 EEVCRFSLRADRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAASCGTNIHLWDF 451 (453)
Q Consensus 374 ~~v~~l~~~~~~v~~~~~~~~~~~lls~s~~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg~D~~IklWDl 451 (453)
. +..++.. ..+..+.+ |..+...+++.|.++|.++++.++.+.-. . |. -+++++.++|-..+.+|.|.+.
T Consensus 101 ~-~k~i~~~-~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~-vk~V~Ws~~g~~val~t~~~i~il~~ 172 (443)
T PF04053_consen 101 V-VKSIKLP-FSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRIDVS--A-VKYVIWSDDGELVALVTKDSIYILKY 172 (443)
T ss_dssp T-T-----S-S-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEESS---E--EEEEE-TTSSEEEEE-S-SEEEEEE
T ss_pred c-ceEEcCC-cccceEEc---CcEEEEECCCCEEEEEhhHcceeeEEecC--C-CcEEEEECCCCEEEEEeCCeEEEEEe
Confidence 1 1122211 11333332 44444444478999999999999998633 2 33 3468999988775668888764
No 354
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=77.88 E-value=9.5 Score=36.61 Aligned_cols=100 Identities=10% Similarity=0.009 Sum_probs=51.7
Q ss_pred CCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEE-ecCCCeeEEEEeeCCCeEE-EEeC-CeEEEEECCCCeEEEEecc
Q 046773 346 AEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFS-LRADRNVNVMGCMNQGYAL-MCVE-GVIRVWEVEGGEYMYSFRE 422 (453)
Q Consensus 346 g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~-~~~~~v~~~~~~~~~~~ll-s~s~-~tIrlWD~~tG~~l~tL~g 422 (453)
+..++.++.+| .+.+|.++..-....+. ...+-+...+...+...+. .++. +.||.|+++-++.+-....
T Consensus 70 ~~~~~vG~~dg-------~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~ 142 (238)
T KOG2444|consen 70 SAKLMVGTSDG-------AVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQ 142 (238)
T ss_pred CceEEeecccc-------eEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeecc
Confidence 34677788888 99999888321111100 0001111111111221122 3333 9999999998887766555
Q ss_pred cCCceEE--EEecCCCEEEEE---eCCcEEEEecC
Q 046773 423 RIGEEVI--AFVGDDRHVAAS---CGTNIHLWDFG 452 (453)
Q Consensus 423 h~~~~V~--a~s~d~~~lasg---~D~~IklWDl~ 452 (453)
|....+. .++..++.|+++ .|..+|.|+++
T Consensus 143 h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 143 HNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 6522132 233445555544 56677777653
No 355
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=77.31 E-value=48 Score=35.18 Aligned_cols=132 Identities=13% Similarity=0.076 Sum_probs=66.3
Q ss_pred EEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc-EEecccccCCcceeeeeeeeeeccceeEEEEcCCce-EEEEcCCcEE
Q 046773 240 LIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE-VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES-AVACTSSRVI 317 (453)
Q Consensus 240 ~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~-~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~-~vas~d~tIr 317 (453)
.+.++|+|++. + . ..|+..-|.....-+ ... +.-....|.+++. ++-....+|+
T Consensus 37 ~ls~npngr~v--~-V-~g~geY~iyt~~~~r~k~~--------------------G~g~~~vw~~~n~yAv~~~~~~I~ 92 (443)
T PF04053_consen 37 SLSHNPNGRFV--L-V-CGDGEYEIYTALAWRNKAF--------------------GSGLSFVWSSRNRYAVLESSSTIK 92 (443)
T ss_dssp EEEE-TTSSEE--E-E-EETTEEEEEETTTTEEEEE--------------------EE-SEEEE-TSSEEEEE-TTS-EE
T ss_pred eEEECCCCCEE--E-E-EcCCEEEEEEccCCccccc--------------------CceeEEEEecCccEEEEECCCeEE
Confidence 47899999973 2 2 456777777643322 111 1122344554444 4434457788
Q ss_pred EE-ECCCCc-eEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCC
Q 046773 318 TF-DLRNQG-MVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQ 395 (453)
Q Consensus 318 lW-Dl~t~~-~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~ 395 (453)
+. +++... ..... . ..+..+-. |..| ....++ .+.++||++++.+..+...+ ++.+.+++++
T Consensus 93 I~kn~~~~~~k~i~~-~----~~~~~If~-G~LL-~~~~~~-------~i~~yDw~~~~~i~~i~v~~--vk~V~Ws~~g 156 (443)
T PF04053_consen 93 IYKNFKNEVVKSIKL-P----FSVEKIFG-GNLL-GVKSSD-------FICFYDWETGKLIRRIDVSA--VKYVIWSDDG 156 (443)
T ss_dssp EEETTEE-TT------S----S-EEEEE--SSSE-EEEETT-------EEEEE-TTT--EEEEESS-E---EEEEE-TTS
T ss_pred EEEcCccccceEEcC-C----cccceEEc-CcEE-EEECCC-------CEEEEEhhHcceeeEEecCC--CcEEEEECCC
Confidence 85 443221 01111 0 11222222 5444 344555 69999999999998887654 7889999888
Q ss_pred CeEEEEeCCeEEEEEC
Q 046773 396 GYALMCVEGVIRVWEV 411 (453)
Q Consensus 396 ~~lls~s~~tIrlWD~ 411 (453)
.+++..+..++.|.+-
T Consensus 157 ~~val~t~~~i~il~~ 172 (443)
T PF04053_consen 157 ELVALVTKDSIYILKY 172 (443)
T ss_dssp SEEEEE-S-SEEEEEE
T ss_pred CEEEEEeCCeEEEEEe
Confidence 8888777666666654
No 356
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=76.28 E-value=3.7 Score=34.66 Aligned_cols=61 Identities=15% Similarity=0.263 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhhhhhhHhHhhhhhHHhhcccchhcc-CCchhHHHhhhhccCC---CCcCc--chhHHHHHH
Q 046773 47 EALAAQVAIEASRSVGRLAAAAALANVFQVCSTWRAVS-RSDLLWHRLTRRIWGR---TNLLH--ATWRDEYIY 114 (453)
Q Consensus 47 ~~l~~~~~~~~~~~~~~~~~~~~l~~~aqv~~~W~~l~-~~~~~w~~~~~~~~~~---~~~~~--~~Wk~~y~~ 114 (453)
..+|-++...||..+. +..|....+-| -.|. +++.||++.|.+..|. ...+. .+|+..|..
T Consensus 5 G~~py~ll~piL~~~~----~~QL~~iE~~n---p~l~~~tdeLW~~~i~rdFp~~~~~~~~~~~~~Wr~~Y~~ 71 (109)
T PF06881_consen 5 GDVPYHLLRPILEKCS----PEQLRRIEDNN---PHLIEDTDELWKKLIKRDFPEESKRQKPKEPESWRELYEK 71 (109)
T ss_pred CCCCHHHHHHHHccCC----HHHHHHHHHhC---CCcchhhHHHHHHHHHhHCcChhhcccccccchHHHHHHH
Confidence 4578888888996554 66888888876 4444 6899999999998753 12222 489999976
No 357
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=74.80 E-value=1e+02 Score=31.47 Aligned_cols=266 Identities=9% Similarity=0.030 Sum_probs=132.3
Q ss_pred eEEEEEEecCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeC----------CCCE
Q 046773 145 LTCRCLTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATL----------DGDI 214 (453)
Q Consensus 145 v~v~~lafs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~----------D~tI 214 (453)
|+|...+|-.- + +.|.|.|..+++.+-.+..... + . ..++.+++.+++++. .--|
T Consensus 5 vyV~D~~~~~~---~----~rv~viD~d~~k~lGmi~~g~~---~----~-~~~spdgk~~y~a~T~~sR~~rG~RtDvv 69 (342)
T PF06433_consen 5 VYVQDPVFFHM---T----SRVYVIDADSGKLLGMIDTGFL---G----N-VALSPDGKTIYVAETFYSRGTRGERTDVV 69 (342)
T ss_dssp EEEEE-GGGGS---S----EEEEEEETTTTEEEEEEEEESS---E----E-EEE-TTSSEEEEEEEEEEETTEEEEEEEE
T ss_pred EEEECCccccc---c----ceEEEEECCCCcEEEEeecccC---C----c-eeECCCCCEEEEEEEEEeccccccceeEE
Confidence 66666655431 1 2789999999998877653111 1 1 124556666655432 1226
Q ss_pred EEEEeecCCcceEEe---e---ecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeee
Q 046773 215 HVAVIDDVANETRTA---H---FGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWR 288 (453)
Q Consensus 215 kvWd~~~~g~~~~~~---~---~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~ 288 (453)
.+||..+- .+... . ...+.......++++|||+. .++-.+--.+|-|=|++.++...--. ..-||.
T Consensus 70 ~~~D~~TL--~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~-~V~N~TPa~SVtVVDl~~~kvv~ei~-----~PGC~~ 141 (342)
T PF06433_consen 70 EIWDTQTL--SPTGEIEIPPKPRAQVVPYKNMFALSADGKFL-YVQNFTPATSVTVVDLAAKKVVGEID-----TPGCWL 141 (342)
T ss_dssp EEEETTTT--EEEEEEEETTS-B--BS--GGGEEE-TTSSEE-EEEEESSSEEEEEEETTTTEEEEEEE-----GTSEEE
T ss_pred EEEecCcC--cccceEecCCcchheecccccceEEccCCcEE-EEEccCCCCeEEEEECCCCceeeeec-----CCCEEE
Confidence 78887761 11100 0 00011111236899999984 35666777889999999988432100 011111
Q ss_pred eeeeeccceeEEEEcCCceEEEEcCCcEEEEECCC-CceEEEE--eeccCCeEE---EEEEecCCEEEEEeCCCccccCc
Q 046773 289 MLTEFTEFVGRVRVTSHESAVACTSSRVITFDLRN-QGMVLGE--RGYGRGLYV---TSVDVNAEAYIVVENRELENQNR 362 (453)
Q Consensus 289 ~l~~h~~~v~~v~~s~~~~~vas~d~tIrlWDl~t-~~~~~~~--~g~~~~~~v---~~~~~~g~~l~s~s~dg~~~~~~ 362 (453)
.. -..+++..+.|.|+++-.-.|.. |+...+. ..+.....+ ..+...++.++-.|..|
T Consensus 142 iy----------P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G------ 205 (342)
T PF06433_consen 142 IY----------PSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEG------ 205 (342)
T ss_dssp EE----------EEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTS------
T ss_pred EE----------ecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCC------
Confidence 10 01245566679998877777774 3322111 122111110 12223334444455655
Q ss_pred ceEEEEEcCCCe--eEEEE----------EecCCCeeEEEEeeCCCeEEEE----e-----C--CeEEEEECCCCeEEEE
Q 046773 363 RLAIVRRVDTFE--EVCRF----------SLRADRNVNVMGCMNQGYALMC----V-----E--GVIRVWEVEGGEYMYS 419 (453)
Q Consensus 363 ~~i~Iw~~~tg~--~v~~l----------~~~~~~v~~~~~~~~~~~lls~----s-----~--~tIrlWD~~tG~~l~t 419 (453)
.+.--++...+ ..... ...|.+-+.+++++..+++..- . + ..|-++|++|++.++.
T Consensus 206 -~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~R 284 (342)
T PF06433_consen 206 -NVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVAR 284 (342)
T ss_dssp -EEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEE
T ss_pred -EEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEE
Confidence 22221221111 11111 1223334455666555444321 1 1 4788889999999999
Q ss_pred ecccCCceEE--EEecCCC-EEEE-E-eCCcEEEEecC
Q 046773 420 FRERIGEEVI--AFVGDDR-HVAA-S-CGTNIHLWDFG 452 (453)
Q Consensus 420 L~gh~~~~V~--a~s~d~~-~las-g-~D~~IklWDl~ 452 (453)
++.- .. ++ +++.|.+ +|.. . .++.+.++|..
T Consensus 285 i~l~-~~-~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~ 320 (342)
T PF06433_consen 285 IPLE-HP-IDSIAVSQDDKPLLYALSAGDGTLDVYDAA 320 (342)
T ss_dssp EEEE-EE-ESEEEEESSSS-EEEEEETTTTEEEEEETT
T ss_pred EeCC-Cc-cceEEEccCCCcEEEEEcCCCCeEEEEeCc
Confidence 8632 12 43 5566665 5543 4 68899999963
No 358
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=73.34 E-value=1 Score=48.72 Aligned_cols=137 Identities=13% Similarity=0.081 Sum_probs=67.9
Q ss_pred CCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc-eEEEE-cCCcEEEEECCCCceEEEEeeccC
Q 046773 258 AGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE-SAVAC-TSSRVITFDLRNQGMVLGERGYGR 335 (453)
Q Consensus 258 ~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~-~~vas-~d~tIrlWDl~t~~~~~~~~g~~~ 335 (453)
.|..++|||+.++-+. |- ..|....+--+-+++++..-++ ++.++ ....+++.|++.. |.....-.+.
T Consensus 127 nds~~~Iwdi~s~ltv-------Pk--e~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs-~~~~~svnTk 196 (783)
T KOG1008|consen 127 NDSSLKIWDINSLLTV-------PK--ESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQS-LDSVSSVNTK 196 (783)
T ss_pred ccCCccceecccccCC-------Cc--cccccccccccCccccccccCcchhhcccccchhhhhhhhhh-hhhhhhhhhh
Confidence 4678999999998421 00 0011111111223344433222 44444 3468999999842 1111000110
Q ss_pred CeEEEEEEe-cCCEEEEEeCCCccccCcceEEEEEcC--CCeeEEEEEecC----CCeeEEEEeeCC-CeEEEEe-C-Ce
Q 046773 336 GLYVTSVDV-NAEAYIVVENRELENQNRRLAIVRRVD--TFEEVCRFSLRA----DRNVNVMGCMNQ-GYALMCV-E-GV 405 (453)
Q Consensus 336 ~~~v~~~~~-~g~~l~s~s~dg~~~~~~~~i~Iw~~~--tg~~v~~l~~~~----~~v~~~~~~~~~-~~lls~s-~-~t 405 (453)
.+.=..++| .++++++ ..|+ .|.|||.. ...+++.+.-.+ +.+..++.||-. +.++++. + +|
T Consensus 197 ~vqG~tVdp~~~nY~cs-~~dg-------~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~t 268 (783)
T KOG1008|consen 197 YVQGITVDPFSPNYFCS-NSDG-------DIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSIT 268 (783)
T ss_pred hcccceecCCCCCceec-cccC-------ceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcce
Confidence 000134555 5666654 5588 99999832 112222222222 236677778743 3334444 3 99
Q ss_pred EEEEECC
Q 046773 406 IRVWEVE 412 (453)
Q Consensus 406 IrlWD~~ 412 (453)
|++.|+.
T Consensus 269 Irlydi~ 275 (783)
T KOG1008|consen 269 IRLYDIC 275 (783)
T ss_pred EEEeccc
Confidence 9999986
No 359
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=72.70 E-value=1.2e+02 Score=31.21 Aligned_cols=239 Identities=13% Similarity=0.091 Sum_probs=116.5
Q ss_pred EEEEEecC--CEEEEE-eC----CCcEEEEECCCCeEEEE-ecCCCCCccccccceEEEEEEc--CCeEEEEeCCCC---
Q 046773 147 CRCLTLSD--LYLACG-FA----DGAVRLFDLTTRLHVRT-FRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGD--- 213 (453)
Q Consensus 147 v~~lafs~--~~LaSG-S~----D~TIrlWD~~tg~~~~t-l~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~t--- 213 (453)
+..+++|+ ++||=+ +. --+|++.|++||+.+.. +.. . ....+.+. ++.++....|..
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~---------~~~~~~W~~d~~~~~y~~~~~~~~~ 195 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-P---------KFSSVSWSDDGKGFFYTRFDEDQRT 195 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-E---------ESEEEEECTTSSEEEEEECSTTTSS
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-c---------ccceEEEeCCCCEEEEEEeCccccc
Confidence 44566665 565532 33 25799999999986543 221 0 11225554 457777666552
Q ss_pred --------EEEEEeecCCcc---eEEeeecceecCceEEEEeCCCceeeEEEEee-CC-CeEEEeeCCCC---c-EEecc
Q 046773 214 --------IHVAVIDDVANE---TRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGL-AG-RAFHIWDRQAE---E-VFVGG 276 (453)
Q Consensus 214 --------IkvWd~~~~g~~---~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS-~D-~tIrvWD~~tg---~-~~~g~ 276 (453)
|+.|.+.+.-.. .+......+ ..+.+..++|++++. |.+.+ .+ ..|.+-|...+ . .
T Consensus 196 ~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~--~~~~~~~s~d~~~l~-i~~~~~~~~s~v~~~d~~~~~~~~~~---- 268 (414)
T PF02897_consen 196 SDSGYPRQVYRHKLGTPQSEDELVFEEPDEPF--WFVSVSRSKDGRYLF-ISSSSGTSESEVYLLDLDDGGSPDAK---- 268 (414)
T ss_dssp -CCGCCEEEEEEETTS-GGG-EEEEC-TTCTT--SEEEEEE-TTSSEEE-EEEESSSSEEEEEEEECCCTTTSS-S----
T ss_pred ccCCCCcEEEEEECCCChHhCeeEEeecCCCc--EEEEEEecCcccEEE-EEEEccccCCeEEEEeccccCCCcCC----
Confidence 455555441111 111111111 023478899999853 33332 33 45777788775 1 1
Q ss_pred cccCCcceeeeeeeeeecc-ceeEEEEcCCceEEEEcC----CcEEEEECCCCce--EE-EEeeccCCeEEEEEEecCCE
Q 046773 277 DLTDHNTVMGWRMLTEFTE-FVGRVRVTSHESAVACTS----SRVITFDLRNQGM--VL-GERGYGRGLYVTSVDVNAEA 348 (453)
Q Consensus 277 ~l~~~~~v~~w~~l~~h~~-~v~~v~~s~~~~~vas~d----~tIrlWDl~t~~~--~~-~~~g~~~~~~v~~~~~~g~~ 348 (453)
|..+..... ....+...++.+.+.+.+ +.|---|+.+... .. ....+.....+..++..++.
T Consensus 269 ----------~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 338 (414)
T PF02897_consen 269 ----------PKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDY 338 (414)
T ss_dssp ----------EEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTE
T ss_pred ----------cEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCE
Confidence 111111111 112222234445554433 3454557776542 11 22334444567788888888
Q ss_pred EEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCC-eeEEEEeeCCCeE-EEEeC----CeEEEEECCCCeE
Q 046773 349 YIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADR-NVNVMGCMNQGYA-LMCVE----GVIRVWEVEGGEY 416 (453)
Q Consensus 349 l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~-v~~~~~~~~~~~l-ls~s~----~tIrlWD~~tG~~ 416 (453)
++.....+ ....++|++...+.....+.+-+.. +..+....+...+ +..++ .+|..+|+++|+.
T Consensus 339 Lvl~~~~~----~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 339 LVLSYREN----GSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEEEEEET----TEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EEEEEEEC----CccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 76654333 0126778888744444444433322 2222222233333 33343 8999999999875
No 360
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=72.34 E-value=1.1e+02 Score=30.42 Aligned_cols=64 Identities=11% Similarity=0.122 Sum_probs=49.1
Q ss_pred cCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEE-EEEcCCeEEEEeCCCCEEEEEeecCC
Q 046773 153 SDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSG-IIITDSQLIFATLDGDIHVAVIDDVA 223 (453)
Q Consensus 153 s~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~-i~f~g~~LasgS~D~tIkvWd~~~~g 223 (453)
-+++++-|.|.+.+-+=+..||+....|.-... ..+++ ++|++..+..||.|++...-|..+.+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~-------vk~~a~~d~~~glIycgshd~~~yalD~~~~~ 126 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILET-------VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYG 126 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhh-------hccceEEcCCCceEEEecCCCcEEEecccccc
Confidence 467899999999999999999987777753221 12233 46888899999999999888877644
No 361
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=70.09 E-value=30 Score=33.01 Aligned_cols=59 Identities=12% Similarity=0.262 Sum_probs=38.9
Q ss_pred eCCCeEEEEeC-CeEEEEECCCCeEEEEe-------c-------ccCCceEE--EEecCCCEEEEEeCCcEEEEecC
Q 046773 393 MNQGYALMCVE-GVIRVWEVEGGEYMYSF-------R-------ERIGEEVI--AFVGDDRHVAASCGTNIHLWDFG 452 (453)
Q Consensus 393 ~~~~~lls~s~-~tIrlWD~~tG~~l~tL-------~-------gh~~~~V~--a~s~d~~~lasg~D~~IklWDl~ 452 (453)
.++.++++... |.+++||+.+++++..- . ..... |. .+..+|.-|++=+++....||..
T Consensus 20 ~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~-i~~~~lt~~G~PiV~lsng~~y~y~~~ 95 (219)
T PF07569_consen 20 CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPN-ITSCSLTSNGVPIVTLSNGDSYSYSPD 95 (219)
T ss_pred eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCc-EEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence 35677776666 99999999999886542 1 12233 54 45567776665466777887653
No 362
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=68.52 E-value=8.8 Score=43.23 Aligned_cols=85 Identities=15% Similarity=0.135 Sum_probs=52.2
Q ss_pred eEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEe-C-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEE
Q 046773 364 LAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCV-E-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVA 439 (453)
Q Consensus 364 ~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s-~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~la 439 (453)
.+.|+ .++|++-...+ .|-.+.++.++|. +.+++.+ . +.+.+|...+.+.-....-|... +. .+|+||..|.
T Consensus 42 SVtIf-adtGEPqr~Vt-~P~hatSLCWHpe-~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~-i~~l~wS~~G~~l~ 117 (1416)
T KOG3617|consen 42 SVTIF-ADTGEPQRDVT-YPVHATSLCWHPE-EFVLAQGWEMGVSDVQKTNTTETHTVVETHPAP-IQGLDWSHDGTVLM 117 (1416)
T ss_pred eEEEE-ecCCCCCcccc-cceehhhhccChH-HHHHhhccccceeEEEecCCceeeeeccCCCCC-ceeEEecCCCCeEE
Confidence 45555 55665432221 1211234444443 2333333 3 99999998876553333446665 44 7899999999
Q ss_pred EE-eCCcEEEEecC
Q 046773 440 AS-CGTNIHLWDFG 452 (453)
Q Consensus 440 sg-~D~~IklWDl~ 452 (453)
|+ .-|.|.+|.+.
T Consensus 118 t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 118 TLDNPGSVHLWRYD 131 (1416)
T ss_pred EcCCCceeEEEEee
Confidence 99 88999999864
No 363
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=67.44 E-value=38 Score=34.62 Aligned_cols=82 Identities=13% Similarity=0.192 Sum_probs=47.1
Q ss_pred EEEEecCC-EEEEEeCCCccccCcceEEEE--EcCCCeeEEEEEecCCCeeEEEEeeCCCeEE-EEe-C-CeEEEEECCC
Q 046773 340 TSVDVNAE-AYIVVENRELENQNRRLAIVR--RVDTFEEVCRFSLRADRNVNVMGCMNQGYAL-MCV-E-GVIRVWEVEG 413 (453)
Q Consensus 340 ~~~~~~g~-~l~s~s~dg~~~~~~~~i~Iw--~~~tg~~v~~l~~~~~~v~~~~~~~~~~~ll-s~s-~-~tIrlWD~~t 413 (453)
.++++..+ .++..-........+.--.|| |..+++.+..+.+.. .+.++..+.+..=++ +.+ . +++.++|..|
T Consensus 243 ~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~-~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t 321 (342)
T PF06433_consen 243 IAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH-PIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT 321 (342)
T ss_dssp EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE-EESEEEEESSSS-EEEEEETTTTEEEEEETTT
T ss_pred eeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC-ccceEEEccCCCcEEEEEcCCCCeEEEEeCcC
Confidence 45654443 344433223334445455677 666888888887532 255777777766344 433 3 8999999999
Q ss_pred CeEEEEecc
Q 046773 414 GEYMYSFRE 422 (453)
Q Consensus 414 G~~l~tL~g 422 (453)
|+.++++.+
T Consensus 322 Gk~~~~~~~ 330 (342)
T PF06433_consen 322 GKLVRSIEQ 330 (342)
T ss_dssp --EEEEE--
T ss_pred CcEEeehhc
Confidence 999998753
No 364
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=66.70 E-value=2.6e+02 Score=32.72 Aligned_cols=214 Identities=12% Similarity=0.067 Sum_probs=103.1
Q ss_pred EEE--cCCeEEEEeC----C--CCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEee---CCCeEEEee
Q 046773 198 III--TDSQLIFATL----D--GDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGL---AGRAFHIWD 266 (453)
Q Consensus 198 i~f--~g~~LasgS~----D--~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS---~D~tIrvWD 266 (453)
|++ ||...|..+. + +.||||+=+. .+......+..=...++.-|.|.+ +|+.- ....|-.|.
T Consensus 215 ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG----~L~stSE~v~gLe~~l~WrPsG~l---IA~~q~~~~~~~VvFfE 287 (928)
T PF04762_consen 215 ISWRGDGEYFAVSSVEPETGSRRVIRVYSREG----ELQSTSEPVDGLEGALSWRPSGNL---IASSQRLPDRHDVVFFE 287 (928)
T ss_pred EEECCCCcEEEEEEEEcCCCceeEEEEECCCc----eEEeccccCCCccCCccCCCCCCE---EEEEEEcCCCcEEEEEe
Confidence 555 3455655554 2 4688887553 011111111111124788999986 44432 245566776
Q ss_pred CCCCc--EEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEE-cCCcEEEEECCCCce-EEEE-eec-cCCeEEE
Q 046773 267 RQAEE--VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVAC-TSSRVITFDLRNQGM-VLGE-RGY-GRGLYVT 340 (453)
Q Consensus 267 ~~tg~--~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas-~d~tIrlWDl~t~~~-~~~~-~g~-~~~~~v~ 340 (453)
-+.=+ .|. ++ +......|..++.++++.++|- -.+.|.||=..+..- ++++ ... .......
T Consensus 288 rNGLrhgeF~---l~----------~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~ 354 (928)
T PF04762_consen 288 RNGLRHGEFT---LR----------FDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFV 354 (928)
T ss_pred cCCcEeeeEe---cC----------CCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCce
Confidence 43322 121 10 0012245778899988877663 345699998887531 2222 111 1111112
Q ss_pred EEEec-CCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCC----
Q 046773 341 SVDVN-AEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGG---- 414 (453)
Q Consensus 341 ~~~~~-g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG---- 414 (453)
.+++. +..+...+.++ .+.+.++.-. ....+ ...+++.-.++.-+ .+++|=.+..+
T Consensus 355 ~Wdpe~p~~L~v~t~~g-------~~~~~~~~~~-----v~~s~------~~~~~D~g~vaVIDG~~lllTpf~~a~VPP 416 (928)
T PF04762_consen 355 KWDPEKPLRLHVLTSNG-------QYEIYDFAWD-----VSRSP------GSSPNDNGTVAVIDGNKLLLTPFRRAVVPP 416 (928)
T ss_pred EECCCCCCEEEEEecCC-------cEEEEEEEEE-----EEecC------CCCccCceEEEEEeCCeEEEecccccCCCc
Confidence 33332 33455555544 3332222100 00000 00111222233333 77777777653
Q ss_pred -eEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEec
Q 046773 415 -EYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 415 -~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl 451 (453)
-|.+.+.-. .. |. +|++++..++.- .|++|.+|++
T Consensus 417 PMs~~~l~~~-~~-v~~vaf~~~~~~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 417 PMSSYELELP-SP-VNDVAFSPSNSRFAVLTSDGSLSIYEW 455 (928)
T ss_pred hHhceEEcCC-CC-cEEEEEeCCCCeEEEEECCCCEEEEEe
Confidence 334444322 23 55 777888777766 9999999874
No 365
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.09 E-value=28 Score=40.37 Aligned_cols=95 Identities=11% Similarity=0.094 Sum_probs=56.1
Q ss_pred eEEEEcCCcEEEEECCCCce-EEE-EeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCC
Q 046773 307 SAVACTSSRVITFDLRNQGM-VLG-ERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRAD 384 (453)
Q Consensus 307 ~~vas~d~tIrlWDl~t~~~-~~~-~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~ 384 (453)
++++++.+.|-+.|+...-+ .+. +..+ ..+...+|+-+|..+..|=.+| -|.+||..++..++.++.+..
T Consensus 102 ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~-~~Vtsvafn~dg~~l~~G~~~G-------~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 102 IVIGTSHGHVLLSDMTGNLGPLHQNERVQ-GPVTSVAFNQDGSLLLAGLGDG-------HVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred EEEEcCchhhhhhhhhcccchhhcCCccC-CcceeeEecCCCceeccccCCC-------cEEEEEccCCcceeeeeecCC
Confidence 34444446677777765322 111 1111 1233455666677777777788 999999999988888887765
Q ss_pred CeeEEEEee--CCCeEEEEeC--CeEEEEEC
Q 046773 385 RNVNVMGCM--NQGYALMCVE--GVIRVWEV 411 (453)
Q Consensus 385 ~v~~~~~~~--~~~~lls~s~--~tIrlWD~ 411 (453)
.+.++.+.. .+...+.+++ |. +|.+
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 555555432 2233445555 43 5654
No 366
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=63.15 E-value=26 Score=38.28 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.9
Q ss_pred EEecCCCEEEEE-eCCcEEEEecC
Q 046773 430 AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 430 a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
+..|||+.||.| .||+|+|-|..
T Consensus 69 ~W~~DGkllaVg~kdG~I~L~Dve 92 (665)
T KOG4640|consen 69 CWRPDGKLLAVGFKDGTIRLHDVE 92 (665)
T ss_pred eecCCCCEEEEEecCCeEEEEEcc
Confidence 567999999999 99999999975
No 367
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=62.57 E-value=18 Score=34.52 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=28.1
Q ss_pred EEEEEecCCEEEEEeCCCcEEEEECCCCeEE
Q 046773 147 CRCLTLSDLYLACGFADGAVRLFDLTTRLHV 177 (453)
Q Consensus 147 v~~lafs~~~LaSGS~D~TIrlWD~~tg~~~ 177 (453)
+..|..++++|+.-..+|.+.+||+.+++++
T Consensus 15 ~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~ 45 (219)
T PF07569_consen 15 VSFLECNGSYLLAITSSGLLYVWNLKKGKAV 45 (219)
T ss_pred eEEEEeCCCEEEEEeCCCeEEEEECCCCeec
Confidence 5678889999999999999999999999985
No 368
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.02 E-value=91 Score=33.73 Aligned_cols=59 Identities=20% Similarity=0.308 Sum_probs=42.5
Q ss_pred EeeCCCeEEEEeC-CeEEEEECCCCeEEE-EecccCCceEE--EEecCCCEEEEEeCCcEEEEec
Q 046773 391 GCMNQGYALMCVE-GVIRVWEVEGGEYMY-SFRERIGEEVI--AFVGDDRHVAASCGTNIHLWDF 451 (453)
Q Consensus 391 ~~~~~~~lls~s~-~tIrlWD~~tG~~l~-tL~gh~~~~V~--a~s~d~~~lasg~D~~IklWDl 451 (453)
....+++++++|. |.|||+|- .|+.-. .|+|--.. |. .+++||++|+...+..+.|-|+
T Consensus 437 aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~-I~hVdvtadGKwil~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 437 ATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDA-IKHVDVTADGKWILATCKTYLLLIDT 499 (644)
T ss_pred eecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCc-eeeEEeeccCcEEEEecccEEEEEEE
Confidence 3345688888887 99999998 665544 45665555 66 6689999988667777776654
No 369
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=62.01 E-value=2.4e+02 Score=30.64 Aligned_cols=122 Identities=15% Similarity=0.071 Sum_probs=59.2
Q ss_pred EEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccce-eEEEEcCCceEEEEcCCcEEEEECCCCceEEEEe
Q 046773 253 LYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFV-GRVRVTSHESAVACTSSRVITFDLRNQGMVLGER 331 (453)
Q Consensus 253 LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v-~~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~~~ 331 (453)
|+.++.++.|.-.|.+||+.+--.....+... ..... ...+ ..+.+..+.+++++.|+.+.-.|.+||+.+-...
T Consensus 72 vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~---~~~~~-~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 72 MYVTTSYSRVYALDAKTGKELWKYDPKLPDDV---IPVMC-CDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKK 147 (527)
T ss_pred EEEECCCCcEEEEECCCCceeeEecCCCCccc---ccccc-cccccccceEECCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence 45566677787789989884311110000000 00000 0011 1245555667777778888889999998764431
Q ss_pred --eccCCeEEE-EEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEE
Q 046773 332 --GYGRGLYVT-SVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRF 379 (453)
Q Consensus 332 --g~~~~~~v~-~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l 379 (453)
.+.....+. +-...++.++.++..++ ...+..+.-.|.+||+.+-.+
T Consensus 148 ~~~~~~~~~~tssP~v~~g~Vivg~~~~~-~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 148 NGDYKAGYTITAAPLVVKGKVITGISGGE-FGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred cccccccccccCCcEEECCEEEEeecccc-cCCCcEEEEEECCCCceeEec
Confidence 111111111 11122445555543210 001226777788888766554
No 370
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=60.95 E-value=27 Score=35.46 Aligned_cols=48 Identities=19% Similarity=0.192 Sum_probs=33.5
Q ss_pred CeEEEEECCCCeEEEEecccCCceEEEEecCCCEEEEEeCCcEEEEec
Q 046773 404 GVIRVWEVEGGEYMYSFRERIGEEVIAFVGDDRHVAASCGTNIHLWDF 451 (453)
Q Consensus 404 ~tIrlWD~~tG~~l~tL~gh~~~~V~a~s~d~~~lasg~D~~IklWDl 451 (453)
+.+.|+|+++++............--.++|||+.||-..|+.|.+.++
T Consensus 23 ~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~ 70 (353)
T PF00930_consen 23 GDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDL 70 (353)
T ss_dssp EEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESS
T ss_pred eeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEEC
Confidence 789999999987654433311111237899999999888889999875
No 371
>PRK13616 lipoprotein LpqB; Provisional
Probab=59.69 E-value=86 Score=34.63 Aligned_cols=103 Identities=9% Similarity=0.011 Sum_probs=51.5
Q ss_pred EEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-------------CeE
Q 046773 340 TSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-------------GVI 406 (453)
Q Consensus 340 ~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-------------~tI 406 (453)
.+++++|+.++...... +..++..-+||..+.+.....++. ......-.++++++.+...++ +.+
T Consensus 355 paiSpdG~~vA~v~~~~-~~~~d~~s~Lwv~~~gg~~~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql 432 (591)
T PRK13616 355 AALSRSGRQVAAVVTLG-RGAPDPASSLWVGPLGGVAVQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQL 432 (591)
T ss_pred ceECCCCCEEEEEEeec-CCCCCcceEEEEEeCCCcceeeec-CCCCCCceECCCCCceEEEecCcceEEEeccCCCceE
Confidence 46788888876554211 011223567777654433233322 222444566777665554432 223
Q ss_pred EEEECCCCeEEEEecccCCceEE--EEecCCCEEEEEeCCcEEE
Q 046773 407 RVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAASCGTNIHL 448 (453)
Q Consensus 407 rlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg~D~~Ikl 448 (453)
.+-++..|+.-..+ .+. |. .+||||++|+--.++.|.|
T Consensus 433 ~~~~vd~ge~~~~~---~g~-Issl~wSpDG~RiA~i~~g~v~V 472 (591)
T PRK13616 433 ARTPVDASAVASRV---PGP-ISELQLSRDGVRAAMIIGGKVYL 472 (591)
T ss_pred EEEeccCchhhhcc---CCC-cCeEEECCCCCEEEEEECCEEEE
Confidence 22255444332222 233 54 6789999887543455543
No 372
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=59.45 E-value=28 Score=21.82 Aligned_cols=28 Identities=29% Similarity=0.302 Sum_probs=22.2
Q ss_pred cCCEEEEEeCCCcEEEEECCCCeEEEEe
Q 046773 153 SDLYLACGFADGAVRLFDLTTRLHVRTF 180 (453)
Q Consensus 153 s~~~LaSGS~D~TIrlWD~~tg~~~~tl 180 (453)
.+..+..++.|+.+...|.++|+.+.++
T Consensus 5 ~~~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 5 SDGTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred ECCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 3446777889999999999999877653
No 373
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=58.79 E-value=20 Score=38.83 Aligned_cols=27 Identities=15% Similarity=0.544 Sum_probs=21.4
Q ss_pred CCCeEEEEeC-CeEEEEECCCCeEEEEe
Q 046773 394 NQGYALMCVE-GVIRVWEVEGGEYMYSF 420 (453)
Q Consensus 394 ~~~~lls~s~-~tIrlWD~~tG~~l~tL 420 (453)
+..++++.+- +++|+||+++++|+++.
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 4566665554 99999999999997765
No 374
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=58.78 E-value=1.9e+02 Score=28.51 Aligned_cols=110 Identities=9% Similarity=0.010 Sum_probs=61.3
Q ss_pred eccCCeEEEEEEe-cCCE-EEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCC-eeEEEEeeCCCeEEEEe--CCeE
Q 046773 332 GYGRGLYVTSVDV-NAEA-YIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADR-NVNVMGCMNQGYALMCV--EGVI 406 (453)
Q Consensus 332 g~~~~~~v~~~~~-~g~~-l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~-v~~~~~~~~~~~lls~s--~~tI 406 (453)
.|......-.+.+ +++. +-|...-|++ .++..+.+||+.+....+.+.- --.++.. +..+.--. +++.
T Consensus 40 pHd~~aFTQGL~~~~~g~LyESTG~yG~S-----~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~ 112 (264)
T PF05096_consen 40 PHDPTAFTQGLEFLDDGTLYESTGLYGQS-----SLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTG 112 (264)
T ss_dssp E--TT-EEEEEEEEETTEEEEEECSTTEE-----EEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEE
T ss_pred CCCCcccCccEEecCCCEEEEeCCCCCcE-----EEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeE
Confidence 3444455555665 4444 4444444522 7888999999877666654422 1112222 23333222 3899
Q ss_pred EEEECCCCeEEEEecccCCceEEEEecCCCEEEEE-eCCcEEEEe
Q 046773 407 RVWEVEGGEYMYSFRERIGEEVIAFVGDDRHVAAS-CGTNIHLWD 450 (453)
Q Consensus 407 rlWD~~tG~~l~tL~gh~~~~V~a~s~d~~~lasg-~D~~IklWD 450 (453)
-+||.+|-+.+.+++=..++ |.+..|++.|+.+ -...+..+|
T Consensus 113 f~yd~~tl~~~~~~~y~~EG--WGLt~dg~~Li~SDGS~~L~~~d 155 (264)
T PF05096_consen 113 FVYDPNTLKKIGTFPYPGEG--WGLTSDGKRLIMSDGSSRLYFLD 155 (264)
T ss_dssp EEEETTTTEEEEEEE-SSS----EEEECSSCEEEE-SSSEEEEE-
T ss_pred EEEccccceEEEEEecCCcc--eEEEcCCCEEEEECCccceEEEC
Confidence 99999999999888533222 5677888877765 444666665
No 375
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=56.13 E-value=57 Score=36.19 Aligned_cols=116 Identities=15% Similarity=0.192 Sum_probs=73.7
Q ss_pred eEEEEEEecCCEEEEEeCCCcEEEEECCCCeEEEE-ecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCC
Q 046773 145 LTCRCLTLSDLYLACGFADGAVRLFDLTTRLHVRT-FRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVA 223 (453)
Q Consensus 145 v~v~~lafs~~~LaSGS~D~TIrlWD~~tg~~~~t-l~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g 223 (453)
|.-+|++-++++|+-|+.-|.+-|++-.+|+.+.- ..|-++ ...+.+|..+...+|.|+..+.|-|.-++..+
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~------~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATG------ITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccc------eEEEEEecchhHhhhhhcCCceEEeehhhccC
Confidence 55688888899999999999999999999986432 222111 11233334445567777777777777665511
Q ss_pred --cceEEeeecceecCce-EEEEeCCCceeeEEEEeeCCCeEEEeeCCC
Q 046773 224 --NETRTAHFGSVMDDGV-LIDFTGCSRYWVGLYAGLAGRAFHIWDRQA 269 (453)
Q Consensus 224 --~~~~~~~~~~v~~~~~-~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~t 269 (453)
...+-.+...-..+.+ .++.++|+.. |++|-.-++|.+=.+.+
T Consensus 110 p~~~~~~t~~d~~~~~rVTal~Ws~~~~k---~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 110 PRDLDYVTPCDKSHKCRVTALEWSKNGMK---LYSGDSQGKVVLTELDS 155 (726)
T ss_pred CCcceeeccccccCCceEEEEEecccccE---EeecCCCceEEEEEech
Confidence 1111111111001111 4889999986 88998888888777766
No 376
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=55.02 E-value=1.2e+02 Score=31.88 Aligned_cols=84 Identities=17% Similarity=0.179 Sum_probs=48.6
Q ss_pred eeccceeEEEEcCCceEEEEcC--CcEEEEECCCCceEEEEeeccCCe--EEEEEEecCC--------------EE---E
Q 046773 292 EFTEFVGRVRVTSHESAVACTS--SRVITFDLRNQGMVLGERGYGRGL--YVTSVDVNAE--------------AY---I 350 (453)
Q Consensus 292 ~h~~~v~~v~~s~~~~~vas~d--~tIrlWDl~t~~~~~~~~g~~~~~--~v~~~~~~g~--------------~l---~ 350 (453)
...-.+.++.++|.+.+.|..| +.|-|+|+.++..++-.+|.-... .+.......+ .+ +
T Consensus 305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 3333466788999887666555 789999999875443334432111 1111111111 11 1
Q ss_pred EEeCCCccccCcceEEEEEcCCCeeEEEEEec
Q 046773 351 VVENRELENQNRRLAIVRRVDTFEEVCRFSLR 382 (453)
Q Consensus 351 s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~ 382 (453)
-+-.-| .+.||.+.+|..+..+...
T Consensus 385 yaprRg-------~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 385 YAPRRG-------ILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred EeccCC-------eEEEEecCCCCEEEEEEeC
Confidence 123344 8899999999888777653
No 377
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=54.95 E-value=2.2e+02 Score=28.07 Aligned_cols=154 Identities=14% Similarity=0.134 Sum_probs=81.1
Q ss_pred EEEeCCCceeeEEEEeeC-CCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEcC-CcEEE
Q 046773 241 IDFTGCSRYWVGLYAGLA-GRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTS-SRVIT 318 (453)
Q Consensus 241 v~Fs~dg~~~~~LaSgS~-D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~d-~tIrl 318 (453)
+.|..+|..+ --+|-. ...|+.+|++||+.+.-..++.. -+--.+.+-++.+..-... +++-+
T Consensus 50 L~~~~~g~Ly--ESTG~yG~S~l~~~d~~tg~~~~~~~l~~~-------------~FgEGit~~~d~l~qLTWk~~~~f~ 114 (264)
T PF05096_consen 50 LEFLDDGTLY--ESTGLYGQSSLRKVDLETGKVLQSVPLPPR-------------YFGEGITILGDKLYQLTWKEGTGFV 114 (264)
T ss_dssp EEEEETTEEE--EEECSTTEEEEEEEETTTSSEEEEEE-TTT---------------EEEEEEETTEEEEEESSSSEEEE
T ss_pred EEecCCCEEE--EeCCCCCcEEEEEEECCCCcEEEEEECCcc-------------ccceeEEEECCEEEEEEecCCeEEE
Confidence 4565555531 113333 34799999999985432222211 0111244445556555654 67899
Q ss_pred EECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCC--eeEE--EEeeC
Q 046773 319 FDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADR--NVNV--MGCMN 394 (453)
Q Consensus 319 WDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~--v~~~--~~~~~ 394 (453)
+|..+-+.+.+....+.+ ..+..+++.++...++. .+..+|..+.+.+..++...+. +..+ .-+.+
T Consensus 115 yd~~tl~~~~~~~y~~EG---WGLt~dg~~Li~SDGS~-------~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~ 184 (264)
T PF05096_consen 115 YDPNTLKKIGTFPYPGEG---WGLTSDGKRLIMSDGSS-------RLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYIN 184 (264)
T ss_dssp EETTTTEEEEEEE-SSS-----EEEECSSCEEEE-SSS-------EEEEE-TTT-SEEEEEE-EETTEE---EEEEEEET
T ss_pred EccccceEEEEEecCCcc---eEEEcCCCEEEEECCcc-------ceEEECCcccceEEEEEEEECCEECCCcEeEEEEc
Confidence 999997766655322221 45667888877655555 7888888888777666543322 1111 11223
Q ss_pred CCeEEEEe-C-CeEEEEECCCCeEEEEe
Q 046773 395 QGYALMCV-E-GVIRVWEVEGGEYMYSF 420 (453)
Q Consensus 395 ~~~lls~s-~-~tIrlWD~~tG~~l~tL 420 (453)
+++.+=- - ..|-.=|.+||+.+..+
T Consensus 185 -G~IyANVW~td~I~~Idp~tG~V~~~i 211 (264)
T PF05096_consen 185 -GKIYANVWQTDRIVRIDPETGKVVGWI 211 (264)
T ss_dssp -TEEEEEETTSSEEEEEETTT-BEEEEE
T ss_pred -CEEEEEeCCCCeEEEEeCCCCeEEEEE
Confidence 3333211 1 55666799999887654
No 378
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=54.50 E-value=83 Score=34.97 Aligned_cols=107 Identities=12% Similarity=0.032 Sum_probs=64.9
Q ss_pred CeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEec-CCCeeE-EEEeeCCCeEEEEeC-CeEEEEECC
Q 046773 336 GLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLR-ADRNVN-VMGCMNQGYALMCVE-GVIRVWEVE 412 (453)
Q Consensus 336 ~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~-~~~v~~-~~~~~~~~~lls~s~-~tIrlWD~~ 412 (453)
.+..+|++...+.++.|++.| .+-+++-.+++.. .++.. .+.+.. ...+++..++++++. +.|-+.-+.
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G-------~lyl~~R~~~~~~-~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~ 106 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAG-------SVYLYNRHTGEMR-KLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLN 106 (726)
T ss_pred eEEEEEeecCCceEEEecccc-------eEEEEecCchhhh-cccccCccceEEEEEecchhHhhhhhcCCceEEeehhh
Confidence 345688888899999999999 8888876665421 11111 111222 223334444444444 888888776
Q ss_pred CC---eEEEEecccC--CceEEE--EecCCCEEEEE-eCCcEEEEe
Q 046773 413 GG---EYMYSFRERI--GEEVIA--FVGDDRHVAAS-CGTNIHLWD 450 (453)
Q Consensus 413 tG---~~l~tL~gh~--~~~V~a--~s~d~~~lasg-~D~~IklWD 450 (453)
.+ ..++.-+.|. ...|+| +++|+.++-+| .-|+|.+=.
T Consensus 107 ~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~ 152 (726)
T KOG3621|consen 107 KELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTE 152 (726)
T ss_pred ccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEE
Confidence 53 2333333443 334885 56999999999 778876543
No 379
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=53.91 E-value=2.7e+02 Score=28.69 Aligned_cols=145 Identities=16% Similarity=0.108 Sum_probs=85.4
Q ss_pred EEEEcCCc--eEEEEc-CCcEEEEECCCCceEEEE-eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCe
Q 046773 299 RVRVTSHE--SAVACT-SSRVITFDLRNQGMVLGE-RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFE 374 (453)
Q Consensus 299 ~v~~s~~~--~~vas~-d~tIrlWDl~t~~~~~~~-~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~ 374 (453)
.+.+++.+ ..+... +++|.+-|+.+..++... .|.. -.-.+++++++.+..+.... ...++.+-|..+..
T Consensus 78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~--P~~~~~~~~~~~vYV~n~~~----~~~~vsvid~~t~~ 151 (381)
T COG3391 78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLG--PVGLAVDPDGKYVYVANAGN----GNNTVSVIDAATNK 151 (381)
T ss_pred ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccC--CceEEECCCCCEEEEEeccc----CCceEEEEeCCCCe
Confidence 34554433 333333 578999998887776654 4432 22357888887665554421 01177777777777
Q ss_pred eEEEEEecCCCeeEEEEeeCCCeEEEEe-C-CeEEEEECCCCeEEE-----EecccCCceEEEEecCCCEEEEE--eC--
Q 046773 375 EVCRFSLRADRNVNVMGCMNQGYALMCV-E-GVIRVWEVEGGEYMY-----SFRERIGEEVIAFVGDDRHVAAS--CG-- 443 (453)
Q Consensus 375 ~v~~l~~~~~~v~~~~~~~~~~~lls~s-~-~tIrlWD~~tG~~l~-----tL~gh~~~~V~a~s~d~~~lasg--~D-- 443 (453)
.+.+... ...-..+++.|++.++..+. + ++|.+-|.++....+ ...-........+.||+.++... .+
T Consensus 152 ~~~~~~v-G~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~ 230 (381)
T COG3391 152 VTATIPV-GNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGS 230 (381)
T ss_pred EEEEEec-CCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCC
Confidence 6666322 11125678889998777665 3 999999977665543 12112232234788999866444 22
Q ss_pred CcEEEEe
Q 046773 444 TNIHLWD 450 (453)
Q Consensus 444 ~~IklWD 450 (453)
++|.+-|
T Consensus 231 ~~v~~id 237 (381)
T COG3391 231 NNVLKID 237 (381)
T ss_pred ceEEEEe
Confidence 4555544
No 380
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=51.44 E-value=2.3e+02 Score=27.13 Aligned_cols=232 Identities=13% Similarity=0.094 Sum_probs=112.7
Q ss_pred EecCCEEEEEeCCCcEEEEEC-CCCeEEEEecCCCCCccccccceEEEEEEcC--CeEEEEeCCCCEEEEEeecCC-cc-
Q 046773 151 TLSDLYLACGFADGAVRLFDL-TTRLHVRTFRPQHSDRLGQFSRAVSGIIITD--SQLIFATLDGDIHVAVIDDVA-NE- 225 (453)
Q Consensus 151 afs~~~LaSGS~D~TIrlWD~-~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g--~~LasgS~D~tIkvWd~~~~g-~~- 225 (453)
.-.++.|+-|..|| +-++++ ...+..+.+.- . .|.-+..-. +.|+. =.|+++.+.+++... ..
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~--~--------~I~ql~vl~~~~~llv-Lsd~~l~~~~L~~l~~~~~ 71 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRILKL--S--------SITQLSVLPELNLLLV-LSDGQLYVYDLDSLEPVST 71 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccceeEeec--c--------eEEEEEEecccCEEEE-EcCCccEEEEchhhccccc
Confidence 33567888898888 888998 33343333321 1 244444322 23332 346999999876511 01
Q ss_pred --eEEeee-----cceecCceEEEEe----CCCceeeEEEEeeCCCeEEEeeCCCCc-EE-ecccccCCcceeeeeeeee
Q 046773 226 --TRTAHF-----GSVMDDGVLIDFT----GCSRYWVGLYAGLAGRAFHIWDRQAEE-VF-VGGDLTDHNTVMGWRMLTE 292 (453)
Q Consensus 226 --~~~~~~-----~~v~~~~~~v~Fs----~dg~~~~~LaSgS~D~tIrvWD~~tg~-~~-~g~~l~~~~~v~~w~~l~~ 292 (453)
+..... ..+........|. ..+.. .|+. ...++|.|+...... .+ .- .+.+ .
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~--~L~v-a~kk~i~i~~~~~~~~~f~~~-----------~ke~-~ 136 (275)
T PF00780_consen 72 SAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSR--RLCV-AVKKKILIYEWNDPRNSFSKL-----------LKEI-S 136 (275)
T ss_pred cccccccccccccccccccCCeeEEeeccccccce--EEEE-EECCEEEEEEEECCcccccce-----------eEEE-E
Confidence 000000 0110000112344 22322 2443 345699998876532 11 00 0000 1
Q ss_pred eccceeEEEEcCCceEEEEcCCcEEEEECCCCceEEEE-eeccC---------CeEEEEEEec-CCEEEEEeCCCccccC
Q 046773 293 FTEFVGRVRVTSHESAVACTSSRVITFDLRNQGMVLGE-RGYGR---------GLYVTSVDVN-AEAYIVVENRELENQN 361 (453)
Q Consensus 293 h~~~v~~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~~-~g~~~---------~~~v~~~~~~-g~~l~s~s~dg~~~~~ 361 (453)
..+.+..++|.++.++++. .....+-|+.++....-. ..... ...+..+..+ ++.++. .+.
T Consensus 137 lp~~~~~i~~~~~~i~v~~-~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~--~~~----- 208 (275)
T PF00780_consen 137 LPDPPSSIAFLGNKICVGT-SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLC--YDN----- 208 (275)
T ss_pred cCCCcEEEEEeCCEEEEEe-CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEE--ecc-----
Confidence 1255677888876666655 445777788876432111 11100 1123334433 333332 111
Q ss_pred cceEEEEEcCCCeeEE--EEEecCCCeeEEEEeeCCCeEEEEeCCeEEEEECCCCeEEEEeccc
Q 046773 362 RRLAIVRRVDTFEEVC--RFSLRADRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYMYSFRER 423 (453)
Q Consensus 362 ~~~i~Iw~~~tg~~v~--~l~~~~~~v~~~~~~~~~~~lls~s~~tIrlWD~~tG~~l~tL~gh 423 (453)
.-++.-..|+..+ .+.+.. ...+++.. .-|+++..++.|.||++.+|++++++.++
T Consensus 209 ---~g~fv~~~G~~~r~~~i~W~~-~p~~~~~~--~pyli~~~~~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 209 ---IGVFVNKNGEPSRKSTIQWSS-APQSVAYS--SPYLIAFSSNSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred ---eEEEEcCCCCcCcccEEEcCC-chhEEEEE--CCEEEEECCCEEEEEECcCCcEEEEEECC
Confidence 2233223343332 333332 22334333 34777777788999999999999998654
No 381
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=50.52 E-value=1.4e+02 Score=31.19 Aligned_cols=95 Identities=9% Similarity=0.037 Sum_probs=45.3
Q ss_pred EEEEecCCEEEEEeC-CCccccCcceEEEEEcCCCeeEEEEEecC-CCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeE
Q 046773 340 TSVDVNAEAYIVVEN-RELENQNRRLAIVRRVDTFEEVCRFSLRA-DRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEY 416 (453)
Q Consensus 340 ~~~~~~g~~l~s~s~-dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~-~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~ 416 (453)
.+|..+|++++-+|. ++ .+.+-+-|+++++..+ |+-.+ +.......+++++.+.-..+ .+|+-=|++|.+.
T Consensus 41 ~~ft~dG~kllF~s~~dg-----~~nly~lDL~t~~i~Q-LTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~ 114 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDG-----NRNLYLLDLATGEITQ-LTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE 114 (386)
T ss_dssp --B-TTS-EEEEEE-TTS-----S-EEEEEETTT-EEEE----SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E
T ss_pred CCcCCCCCEEEEEeccCC-----CcceEEEEcccCEEEE-CccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE
Confidence 577888887765544 44 2255556777876543 44333 22234455667777665544 7888889999754
Q ss_pred --EEEeccc-CCceEEEEecCCCEEEE
Q 046773 417 --MYSFRER-IGEEVIAFVGDDRHVAA 440 (453)
Q Consensus 417 --l~tL~gh-~~~~V~a~s~d~~~las 440 (453)
+++++.. .+...+....|++.++.
T Consensus 115 ~~vy~~p~~~~g~gt~v~n~d~t~~~g 141 (386)
T PF14583_consen 115 RVVYEVPDDWKGYGTWVANSDCTKLVG 141 (386)
T ss_dssp EEEEE--TTEEEEEEEEE-TTSSEEEE
T ss_pred EEEEECCcccccccceeeCCCccEEEE
Confidence 5665422 22212244567777663
No 382
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=50.38 E-value=42 Score=23.58 Aligned_cols=28 Identities=11% Similarity=0.044 Sum_probs=19.7
Q ss_pred eeEEEEeeCCC--eEEEEe-C-CeEEEEECCC
Q 046773 386 NVNVMGCMNQG--YALMCV-E-GVIRVWEVEG 413 (453)
Q Consensus 386 v~~~~~~~~~~--~lls~s-~-~tIrlWD~~t 413 (453)
+|.+.|+|++. -+++-+ . +-|-|+|+.+
T Consensus 3 vR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 3 VRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred eEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 66777776554 444444 4 9999999986
No 383
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=49.08 E-value=4.6e+02 Score=30.01 Aligned_cols=68 Identities=18% Similarity=0.181 Sum_probs=41.8
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE------------------cCCeEEEEeCCCCEE
Q 046773 154 DLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII------------------TDSQLIFATLDGDIH 215 (453)
Q Consensus 154 ~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f------------------~g~~LasgS~D~tIk 215 (453)
++.|..++.++.|.=-|.+||+.+..+...............+++++ .+.+++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 35666677788999999999999988764321100000001122222 234788888898877
Q ss_pred EEEeec
Q 046773 216 VAVIDD 221 (453)
Q Consensus 216 vWd~~~ 221 (453)
--|.++
T Consensus 274 ALDA~T 279 (764)
T TIGR03074 274 ALDADT 279 (764)
T ss_pred EEECCC
Confidence 667666
No 384
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=48.43 E-value=78 Score=34.75 Aligned_cols=46 Identities=20% Similarity=0.191 Sum_probs=32.4
Q ss_pred EEEEEcCC-CeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEE
Q 046773 365 AIVRRVDT-FEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYS 419 (453)
Q Consensus 365 i~Iw~~~t-g~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~t 419 (453)
-|||++++ ++.+. +++.+-|||+.++.+-. |+|+|=|+++|..+..
T Consensus 52 qRlwtip~p~~~v~---------~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 52 QRLWTIPIPGENVT---------ASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred ceeEeccCCCCccc---------eeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 37888774 33322 35666678777666644 9999999999988766
No 385
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=46.90 E-value=3.2e+02 Score=27.51 Aligned_cols=141 Identities=15% Similarity=0.105 Sum_probs=73.7
Q ss_pred EEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccce-eEEEEcCCceEEEEcCCcEEEEECCCCce--EEE
Q 046773 253 LYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFV-GRVRVTSHESAVACTSSRVITFDLRNQGM--VLG 329 (453)
Q Consensus 253 LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v-~~v~~s~~~~~vas~d~tIrlWDl~t~~~--~~~ 329 (453)
+.+--..+.|.-||.++|+... | .+.+.+ +-..++..+.+++|.. .+.++|++++.. ++.
T Consensus 40 ~w~DI~~~~i~r~~~~~g~~~~------------~----~~p~~~~~~~~~d~~g~Lv~~~~-g~~~~~~~~~~~~t~~~ 102 (307)
T COG3386 40 LWVDILGGRIHRLDPETGKKRV------------F----PSPGGFSSGALIDAGGRLIACEH-GVRLLDPDTGGKITLLA 102 (307)
T ss_pred EEEeCCCCeEEEecCCcCceEE------------E----ECCCCcccceeecCCCeEEEEcc-ccEEEeccCCceeEEec
Confidence 3455567788888888876211 0 011112 2234566667776654 567788877654 222
Q ss_pred EeeccC---CeEEEEEEecCCEEEEEeC---C-CccccCcceEEEEEcC-CCeeEEEEEecCCCeeEEEEeeCCCeEEEE
Q 046773 330 ERGYGR---GLYVTSVDVNAEAYIVVEN---R-ELENQNRRLAIVRRVD-TFEEVCRFSLRADRNVNVMGCMNQGYALMC 401 (453)
Q Consensus 330 ~~g~~~---~~~v~~~~~~g~~l~s~s~---d-g~~~~~~~~i~Iw~~~-tg~~v~~l~~~~~~v~~~~~~~~~~~lls~ 401 (453)
...... ...-..++++|...+.-.. . ...+.. .-+||-++ .+..+..+..+-..-.+++++||++.+..+
T Consensus 103 ~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~--~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~a 180 (307)
T COG3386 103 EPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERP--TGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVA 180 (307)
T ss_pred cccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCC--cceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEE
Confidence 211111 1112346777776655333 1 111122 44677776 454443332211112468999999877765
Q ss_pred eC--CeEEEEECC
Q 046773 402 VE--GVIRVWEVE 412 (453)
Q Consensus 402 s~--~tIrlWD~~ 412 (453)
-. +.|.-++..
T Consensus 181 DT~~~~i~r~~~d 193 (307)
T COG3386 181 DTPANRIHRYDLD 193 (307)
T ss_pred eCCCCeEEEEecC
Confidence 44 777777664
No 386
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=46.44 E-value=2.2e+02 Score=30.21 Aligned_cols=89 Identities=16% Similarity=0.232 Sum_probs=46.2
Q ss_pred eEEEEEcCCCeeEEEEEecCCCe--eEEEEeeCC--CeE-EEEeC-CeE-EEEECCCCeE----EEEeccc--C------
Q 046773 364 LAIVRRVDTFEEVCRFSLRADRN--VNVMGCMNQ--GYA-LMCVE-GVI-RVWEVEGGEY----MYSFRER--I------ 424 (453)
Q Consensus 364 ~i~Iw~~~tg~~v~~l~~~~~~v--~~~~~~~~~--~~l-ls~s~-~tI-rlWD~~tG~~----l~tL~gh--~------ 424 (453)
++.+||+.+.+.++++.+.++.. ..+-|.-++ .+- +.|+. ++| +++..+.|+- +-+++.- .
T Consensus 223 ~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ 302 (461)
T PF05694_consen 223 SLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPE 302 (461)
T ss_dssp EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---G
T ss_pred eEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccc
Confidence 78999999999999998876542 233333232 222 23333 444 4444344422 2233211 0
Q ss_pred --------CceEE--EEecCCCEE-EEE-eCCcEEEEecC
Q 046773 425 --------GEEVI--AFVGDDRHV-AAS-CGTNIHLWDFG 452 (453)
Q Consensus 425 --------~~~V~--a~s~d~~~l-asg-~D~~IklWDl~ 452 (453)
-..|+ .+|.|+|+| +|. -+|.||-+|+.
T Consensus 303 ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDIS 342 (461)
T PF05694_consen 303 MLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDIS 342 (461)
T ss_dssp GGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-S
T ss_pred cccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecC
Confidence 12244 578999998 566 89999999985
No 387
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.34 E-value=3.4e+02 Score=27.39 Aligned_cols=121 Identities=12% Similarity=0.019 Sum_probs=65.9
Q ss_pred EEEEECCCCceEEEEeeccCCeE--EEEEEecCCEEEEEeCCCccccCcceEEEEEcCCC-eeEEEEEecCCCeeEEEEe
Q 046773 316 VITFDLRNQGMVLGERGYGRGLY--VTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTF-EEVCRFSLRADRNVNVMGC 392 (453)
Q Consensus 316 IrlWDl~t~~~~~~~~g~~~~~~--v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg-~~v~~l~~~~~~v~~~~~~ 392 (453)
..++|..+.+.+.+......... =-+|++||..|...-.|- +.|+..|-|+|...+ +.+-++..+.-+--.+...
T Consensus 93 ~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndf--d~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm 170 (366)
T COG3490 93 AMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDF--DPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLM 170 (366)
T ss_pred EEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCC--CCCCceEEEEecccccceecccccCCcCcceeEEe
Confidence 56888888765544311111000 025889998876544443 566779999998753 4555555443222334555
Q ss_pred eCCCeEEEEeC-------------------CeEEEEECCCCeEEE--Eec--ccCCceEE--EEecCCCEEE
Q 046773 393 MNQGYALMCVE-------------------GVIRVWEVEGGEYMY--SFR--ERIGEEVI--AFVGDDRHVA 439 (453)
Q Consensus 393 ~~~~~lls~s~-------------------~tIrlWD~~tG~~l~--tL~--gh~~~~V~--a~s~d~~~la 439 (453)
+|++.++.+.+ -.+-+-|..||+.|. +|+ -+.-+ |. ++.+||+.+.
T Consensus 171 ~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lS-iRHld~g~dgtvwf 241 (366)
T COG3490 171 ADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLS-IRHLDIGRDGTVWF 241 (366)
T ss_pred cCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcc-eeeeeeCCCCcEEE
Confidence 67776665432 134566777776653 343 22333 33 3345555444
No 388
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=45.19 E-value=21 Score=40.71 Aligned_cols=47 Identities=15% Similarity=0.231 Sum_probs=32.5
Q ss_pred CeEEEEECCCCeEEEEecccCCce------------EEEEecCCCEEEEE-eCCcEEEEec
Q 046773 404 GVIRVWEVEGGEYMYSFRERIGEE------------VIAFVGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 404 ~tIrlWD~~tG~~l~tL~gh~~~~------------V~a~s~d~~~lasg-~D~~IklWDl 451 (453)
++|+|-...+... .-+++|..+. |..++|||+.+|.+ .||.++.|.+
T Consensus 205 ~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 205 GEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred CceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 7777766554322 3345675441 22578999999999 9999999975
No 389
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=43.43 E-value=83 Score=22.12 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=22.7
Q ss_pred EEEEEecC-----CEEEEEeCCCcEEEEECCC
Q 046773 147 CRCLTLSD-----LYLACGFADGAVRLFDLTT 173 (453)
Q Consensus 147 v~~lafs~-----~~LaSGS~D~TIrlWD~~t 173 (453)
|.|+.||| ++||-.-.-+.|-|+|+.+
T Consensus 3 vR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 3 VRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred eEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 78999994 5788877778999999985
No 390
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=43.05 E-value=4.1e+02 Score=27.73 Aligned_cols=28 Identities=21% Similarity=0.153 Sum_probs=20.7
Q ss_pred cceeEEEEcCC-ceEEEEcCCcEEEEECC
Q 046773 295 EFVGRVRVTSH-ESAVACTSSRVITFDLR 322 (453)
Q Consensus 295 ~~v~~v~~s~~-~~~vas~d~tIrlWDl~ 322 (453)
+.+-++.++.+ .+++...|+++++.|+.
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYDLF 109 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEeCC
Confidence 45556667654 46677889999999996
No 391
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=42.84 E-value=1.4e+02 Score=32.40 Aligned_cols=27 Identities=7% Similarity=-0.050 Sum_probs=19.6
Q ss_pred CCceEEEEcCCcEEEEECCCCceEEEE
Q 046773 304 SHESAVACTSSRVITFDLRNQGMVLGE 330 (453)
Q Consensus 304 ~~~~~vas~d~tIrlWDl~t~~~~~~~ 330 (453)
++-+++++.++.++.+|.+||+.+-..
T Consensus 472 g~lvf~g~~~G~l~a~D~~TGe~lw~~ 498 (527)
T TIGR03075 472 GDLVFYGTLEGYFKAFDAKTGEELWKF 498 (527)
T ss_pred CcEEEEECCCCeEEEEECCCCCEeEEE
Confidence 333345455789999999999887654
No 392
>PHA02713 hypothetical protein; Provisional
Probab=41.95 E-value=5e+02 Score=28.35 Aligned_cols=66 Identities=17% Similarity=0.271 Sum_probs=35.7
Q ss_pred EEecCCEEEEEeCC------CcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCC-----CEEEEE
Q 046773 150 LTLSDLYLACGFAD------GAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDG-----DIHVAV 218 (453)
Q Consensus 150 lafs~~~LaSGS~D------~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~-----tIkvWd 218 (453)
..+++...+.|+.+ .++-.+|+.+.+-. .+..-... .......+.+|..-+.|+.++ ++..+|
T Consensus 300 a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~-----R~~~~~~~~~g~IYviGG~~~~~~~~sve~Yd 373 (557)
T PHA02713 300 AIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKN-----RCRFSLAVIDDTIYAIGGQNGTNVERTIECYT 373 (557)
T ss_pred EEECCEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcch-----hhceeEEEECCEEEEECCcCCCCCCceEEEEE
Confidence 33455666777754 35667888877532 22110000 011233456777778887764 366677
Q ss_pred eec
Q 046773 219 IDD 221 (453)
Q Consensus 219 ~~~ 221 (453)
..+
T Consensus 374 p~~ 376 (557)
T PHA02713 374 MGD 376 (557)
T ss_pred CCC
Confidence 554
No 393
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=41.73 E-value=72 Score=20.91 Aligned_cols=28 Identities=4% Similarity=0.048 Sum_probs=20.5
Q ss_pred CCCeEEEEe-C-CeEEEEECCCCeEEEEec
Q 046773 394 NQGYALMCV-E-GVIRVWEVEGGEYMYSFR 421 (453)
Q Consensus 394 ~~~~lls~s-~-~tIrlWD~~tG~~l~tL~ 421 (453)
+++++.++. . ++|.+.|+++++.+..+.
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 455555443 3 899999999998887765
No 394
>PRK13616 lipoprotein LpqB; Provisional
Probab=41.39 E-value=5.3e+02 Score=28.52 Aligned_cols=107 Identities=14% Similarity=0.064 Sum_probs=51.6
Q ss_pred ceeEEEEcCCceEEEE--------cCC--cEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCcc---ccCc
Q 046773 296 FVGRVRVTSHESAVAC--------TSS--RVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELE---NQNR 362 (453)
Q Consensus 296 ~v~~v~~s~~~~~vas--------~d~--tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~---~~~~ 362 (453)
.+.+.++++++..++. .|. .+.+.+.......+ ..+. ...-.+++++|+.+...+....- ...+
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~l-t~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQV-LEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceee-ecCC--CCCCceECCCCCceEEEecCcceEEEeccC
Confidence 4567788887754331 132 35555653222111 1222 23336788887777666432100 0000
Q ss_pred ceEEEE--EcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeCCeEEE
Q 046773 363 RLAIVR--RVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVEGVIRV 408 (453)
Q Consensus 363 ~~i~Iw--~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~~tIrl 408 (453)
.+-.+| .++.++..+ ..+..+..+.+++||.+++...++.|.|
T Consensus 428 ~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~V 472 (591)
T PRK13616 428 ATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIGGKVYL 472 (591)
T ss_pred CCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEECCEEEE
Confidence 022333 444443222 1123477788888888877655554443
No 395
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=40.08 E-value=1.2e+02 Score=29.66 Aligned_cols=55 Identities=16% Similarity=0.221 Sum_probs=42.3
Q ss_pred CCCCCCCeEEEEEEecCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCC
Q 046773 138 DVDNPDGLTCRCLTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDS 203 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~ 203 (453)
+|-.||+ +|+.-++++.++.-.-+||.-.|+.||+.+.+++-.+. .+++.+|-|.
T Consensus 210 e~~~PDG---m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~--------qitsccFgGk 264 (310)
T KOG4499|consen 210 ESLEPDG---MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTP--------QITSCCFGGK 264 (310)
T ss_pred CCCCCCc---ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCC--------ceEEEEecCC
Confidence 5666788 45555778777777788999999999999999875332 6888899875
No 396
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=39.85 E-value=50 Score=21.70 Aligned_cols=24 Identities=13% Similarity=0.319 Sum_probs=15.1
Q ss_pred EEEEeCCCceeeEEEEeeCC--CeEEEe
Q 046773 240 LIDFTGCSRYWVGLYAGLAG--RAFHIW 265 (453)
Q Consensus 240 ~v~Fs~dg~~~~~LaSgS~D--~tIrvW 265 (453)
..+|||||+++ +++...+ +...||
T Consensus 13 ~p~~SpDGk~i--~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 13 SPAWSPDGKYI--YFTSNRNDRGSFDIY 38 (39)
T ss_dssp EEEE-TTSSEE--EEEEECT--SSEEEE
T ss_pred CEEEecCCCEE--EEEecCCCCCCcCEE
Confidence 36899999984 4555555 555555
No 397
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=39.11 E-value=75 Score=22.54 Aligned_cols=32 Identities=16% Similarity=0.221 Sum_probs=23.3
Q ss_pred CeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEE
Q 046773 385 RNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYM 417 (453)
Q Consensus 385 ~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l 417 (453)
.+..+.+||....++.++. |.|.|+.+ +++.+
T Consensus 13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 3667778888777777776 88888887 55543
No 398
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.68 E-value=4e+02 Score=29.08 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=26.0
Q ss_pred eeEEEEeeCC----CeEEEEeCCeEEEEECCCCeEEEEeccc
Q 046773 386 NVNVMGCMNQ----GYALMCVEGVIRVWEVEGGEYMYSFRER 423 (453)
Q Consensus 386 v~~~~~~~~~----~~lls~s~~tIrlWD~~tG~~l~tL~gh 423 (453)
++.+.++|++ ..++..++++|||+|+..-+.++...|.
T Consensus 168 l~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylqpge 209 (741)
T KOG4460|consen 168 LKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQPGE 209 (741)
T ss_pred eeeccccCCccCCceEEEEecCcEEEEEecCCcchhhccCCC
Confidence 4445566643 3445566699999999988887766554
No 399
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=38.20 E-value=7.2e+02 Score=29.16 Aligned_cols=104 Identities=17% Similarity=0.146 Sum_probs=53.0
Q ss_pred cCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC----CeEEEEECC---CCeEE
Q 046773 345 NAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE----GVIRVWEVE---GGEYM 417 (453)
Q Consensus 345 ~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~----~tIrlWD~~---tG~~l 417 (453)
||..+|+.+.+.+ ....+.+|||+-+ |+...+-..-+..-..+.+-|.|..++++.- ..|-.+.-. .|+..
T Consensus 220 DG~yFAVss~~~~-~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~ 297 (928)
T PF04762_consen 220 DGEYFAVSSVEPE-TGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFT 297 (928)
T ss_pred CCcEEEEEEEEcC-CCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEe
Confidence 3444555444221 1135689999766 4321111100111123455566665554432 566677643 23332
Q ss_pred EEecccCCceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 418 YSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 418 ~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
..+ .+.+..|. ++++|+.+||.- .|. |.||-.+
T Consensus 298 l~~-~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~ 333 (928)
T PF04762_consen 298 LRF-DPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRS 333 (928)
T ss_pred cCC-CCCCceeeEEEECCCCCEEEEEecCC-ceEEEee
Confidence 222 13333365 667999999988 654 9999654
No 400
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=37.95 E-value=7.9e+02 Score=29.53 Aligned_cols=145 Identities=15% Similarity=0.171 Sum_probs=0.0
Q ss_pred cceeEEEEc--CCceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCC
Q 046773 295 EFVGRVRVT--SHESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDT 372 (453)
Q Consensus 295 ~~v~~v~~s--~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~t 372 (453)
+.|-++.|- +..++++..++.|-+=|+++........--. ++.+.+.+|+.+.++.++... ++ +-...+
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~-GI~aaswS~Dee~l~liT~~~-------tl-l~mT~~ 139 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDN-GISAASWSPDEELLALITGRQ-------TL-LFMTKD 139 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccC-ceEEEeecCCCcEEEEEeCCc-------EE-EEEecc
Q ss_pred CeeEEEEEe---------------------------------------------cCCCeeEEEEeeCCCeEEE-----Ee
Q 046773 373 FEEVCRFSL---------------------------------------------RADRNVNVMGCMNQGYALM-----CV 402 (453)
Q Consensus 373 g~~v~~l~~---------------------------------------------~~~~v~~~~~~~~~~~lls-----~s 402 (453)
.+++..-.+ -.+.-.++.+--||.+.+. -.
T Consensus 140 f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~ 219 (1265)
T KOG1920|consen 140 FEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESET 219 (1265)
T ss_pred ccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccC
Q ss_pred C-CeEEEEECCCCeEEEEecccCCceEEEEe--cCCCEEEEE----eCCcEEEEe
Q 046773 403 E-GVIRVWEVEGGEYMYSFRERIGEEVIAFV--GDDRHVAAS----CGTNIHLWD 450 (453)
Q Consensus 403 ~-~tIrlWD~~tG~~l~tL~gh~~~~V~a~s--~d~~~lasg----~D~~IklWD 450 (453)
+ ++||+||-+ |..-.+-+--.+- -.+++ |.|..|++- +|+.|.++.
T Consensus 220 ~~RkirV~drE-g~Lns~se~~~~l-~~~LsWkPsgs~iA~iq~~~sd~~IvffE 272 (1265)
T KOG1920|consen 220 GTRKIRVYDRE-GALNSTSEPVEGL-QHSLSWKPSGSLIAAIQCKTSDSDIVFFE 272 (1265)
T ss_pred CceeEEEeccc-chhhcccCccccc-ccceeecCCCCeEeeeeecCCCCcEEEEe
No 401
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=36.03 E-value=5.4e+02 Score=27.44 Aligned_cols=28 Identities=7% Similarity=0.300 Sum_probs=18.3
Q ss_pred eeEEEEeeCCCeEEEEeC--CeEEEEECCC
Q 046773 386 NVNVMGCMNQGYALMCVE--GVIRVWEVEG 413 (453)
Q Consensus 386 v~~~~~~~~~~~lls~s~--~tIrlWD~~t 413 (453)
+..+..++|+++|-.+.- |.||-+|+..
T Consensus 314 itDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 314 ITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp ---EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred eEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 455677889999876664 9999999986
No 402
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=35.00 E-value=4.1e+02 Score=25.39 Aligned_cols=146 Identities=10% Similarity=0.103 Sum_probs=75.1
Q ss_pred CceEEEEcCCcEEEEECCCCceEEEEeecc-CCeEEEEEEecCCEEEEEeCCCccccCcceEEEE-EcCCC----eeEE-
Q 046773 305 HESAVACTSSRVITFDLRNQGMVLGERGYG-RGLYVTSVDVNAEAYIVVENRELENQNRRLAIVR-RVDTF----EEVC- 377 (453)
Q Consensus 305 ~~~~vas~d~tIrlWDl~t~~~~~~~~g~~-~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw-~~~tg----~~v~- 377 (453)
+-++++.....|.+||+.+..|.......+ ..+.-...+..|+.+++--.+.... +...+|++ +|..- ++++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~-~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRS-PVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCc-cceEEEEEEEhhhhcccCCcEEE
Confidence 667787777889999999655543322211 1122233456688888764443111 01145664 44321 2222
Q ss_pred EEEecC---------------------CCeeEEEEeeCCCeEEEEeCCeEEEEECCCCeE------EEEec----ccCCc
Q 046773 378 RFSLRA---------------------DRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEY------MYSFR----ERIGE 426 (453)
Q Consensus 378 ~l~~~~---------------------~~v~~~~~~~~~~~lls~s~~tIrlWD~~tG~~------l~tL~----gh~~~ 426 (453)
.+.+|+ .....++-||-.+.++.++.+++.||-+..... +..|. -|...
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~ 187 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDN 187 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhheecC
Confidence 111211 112334556666677777779999998875433 11221 12111
Q ss_pred -eEEEEecCCCEEEEEeCCcEEEEec
Q 046773 427 -EVIAFVGDDRHVAASCGTNIHLWDF 451 (453)
Q Consensus 427 -~V~a~s~d~~~lasg~D~~IklWDl 451 (453)
....++.=+.+||..+|..+++..+
T Consensus 188 ~~p~~v~ic~~yiA~~s~~ev~Vlkl 213 (215)
T PF14761_consen 188 FKPTQVAICEGYIAVMSDLEVLVLKL 213 (215)
T ss_pred ceEEEEEEEeeEEEEecCCEEEEEEE
Confidence 1123344556777667777777654
No 403
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=34.33 E-value=84 Score=20.77 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=21.7
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEec
Q 046773 156 YLACGFADGAVRLFDLTTRLHVRTFR 181 (453)
Q Consensus 156 ~LaSGS~D~TIrlWD~~tg~~~~tl~ 181 (453)
.+..++.|+.|.--|++||+.+..++
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeee
Confidence 34556999999999999999887775
No 404
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=33.64 E-value=6.8e+02 Score=27.49 Aligned_cols=58 Identities=14% Similarity=-0.024 Sum_probs=30.5
Q ss_pred CcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCC
Q 046773 314 SRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTF 373 (453)
Q Consensus 314 ~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg 373 (453)
.++..+|+.++.......-............++..++.++.++ +....++...|..+.
T Consensus 444 ~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~--~~~~~~VE~ydp~~~ 501 (571)
T KOG4441|consen 444 NSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDG--TSALSSVERYDPETN 501 (571)
T ss_pred ceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccC--CCccceEEEEcCCCC
Confidence 4688999999864322111111111123345566777777776 222224666666654
No 405
>PRK10115 protease 2; Provisional
Probab=33.26 E-value=7.4e+02 Score=27.84 Aligned_cols=187 Identities=7% Similarity=-0.032 Sum_probs=83.9
Q ss_pred EEEeCCCceeeEEE--EeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCC--ceEEEEcC---
Q 046773 241 IDFTGCSRYWVGLY--AGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSH--ESAVACTS--- 313 (453)
Q Consensus 241 v~Fs~dg~~~~~La--SgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~--~~~vas~d--- 313 (453)
+.+||||++++... .|+...+|+|-|+.+|+.+. .. +.+ . -..+.++++ .++.+..+
T Consensus 132 ~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~-------~~------i~~-~--~~~~~w~~D~~~~~y~~~~~~~ 195 (686)
T PRK10115 132 MAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYP-------EL------LDN-V--EPSFVWANDSWTFYYVRKHPVT 195 (686)
T ss_pred EEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCC-------cc------ccC-c--ceEEEEeeCCCEEEEEEecCCC
Confidence 45678887633221 24445678999999887321 00 101 0 123555543 34444332
Q ss_pred ---CcEEEEECCCC--ceEEEEeeccCCeEEEEEEe-cCCEEEEEeCCCccccCcceEEEEEcC--CCeeEEEEEecCCC
Q 046773 314 ---SRVITFDLRNQ--GMVLGERGYGRGLYVTSVDV-NAEAYIVVENRELENQNRRLAIVRRVD--TFEEVCRFSLRADR 385 (453)
Q Consensus 314 ---~tIrlWDl~t~--~~~~~~~g~~~~~~v~~~~~-~g~~l~s~s~dg~~~~~~~~i~Iw~~~--tg~~v~~l~~~~~~ 385 (453)
..|.++++.|+ +-.+..........+..... ++..++..+.++ .+..+.+++.+ +++... +..++..
T Consensus 196 ~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~----~~~~~~l~~~~~~~~~~~~-~~~~~~~ 270 (686)
T PRK10115 196 LLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASA----TTSEVLLLDAELADAEPFV-FLPRRKD 270 (686)
T ss_pred CCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECC----ccccEEEEECcCCCCCceE-EEECCCC
Confidence 35888999987 22111122122233333333 666666555444 22255666643 333222 2223322
Q ss_pred eeEEEEeeCCCeEEEEe-C-CeEEEE--ECC-CCeEEEEeccc-CCceEEEEecCCCEE-EEE-eCCcEEEE
Q 046773 386 NVNVMGCMNQGYALMCV-E-GVIRVW--EVE-GGEYMYSFRER-IGEEVIAFVGDDRHV-AAS-CGTNIHLW 449 (453)
Q Consensus 386 v~~~~~~~~~~~lls~s-~-~tIrlW--D~~-tG~~l~tL~gh-~~~~V~a~s~d~~~l-asg-~D~~IklW 449 (453)
+.....+..+...+... + ..-+|. ++. +++ ..++..+ .+..|..+...+..| ++. .++.-+|+
T Consensus 271 ~~~~~~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~-~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~~~l~ 341 (686)
T PRK10115 271 HEYSLDHYQHRFYLRSNRHGKNFGLYRTRVRDEQQ-WEELIPPRENIMLEGFTLFTDWLVVEERQRGLTSLR 341 (686)
T ss_pred CEEEEEeCCCEEEEEEcCCCCCceEEEecCCCccc-CeEEECCCCCCEEEEEEEECCEEEEEEEeCCEEEEE
Confidence 22222222222223222 2 233333 444 232 2344444 343355555445555 444 66665554
No 406
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=32.49 E-value=1.6e+02 Score=29.40 Aligned_cols=65 Identities=15% Similarity=0.188 Sum_probs=45.5
Q ss_pred eEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCc------eEEEEecCCCEEEEE-eCCcEEEEec
Q 046773 387 VNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGE------EVIAFVGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 387 ~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~------~V~a~s~d~~~lasg-~D~~IklWDl 451 (453)
.++....+|.+|+++-. .+|-+-|-+||+.+-.|.|..+. ...+..-|-+++-.+ .+++|.|.|=
T Consensus 147 NsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 147 NSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred eeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 34444557788877766 99999999999999999877221 023445666677555 7788888774
No 407
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=31.39 E-value=6.2e+02 Score=26.38 Aligned_cols=154 Identities=15% Similarity=0.174 Sum_probs=77.1
Q ss_pred eeeeccceeEEEEcCCce-EEEEcCCcEEEEECCCCceEEEE--ee----ccCCeEEEEEEec-----CC-----EEEEE
Q 046773 290 LTEFTEFVGRVRVTSHES-AVACTSSRVITFDLRNQGMVLGE--RG----YGRGLYVTSVDVN-----AE-----AYIVV 352 (453)
Q Consensus 290 l~~h~~~v~~v~~s~~~~-~vas~d~tIrlWDl~t~~~~~~~--~g----~~~~~~v~~~~~~-----g~-----~l~s~ 352 (453)
+....++|.+++.|.=+. +++..++++.|-|++....+... .. +....++.++.|. ++ .++.+
T Consensus 82 ~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp E---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 334468999999986554 55567899999999877666653 11 1223345554332 22 45667
Q ss_pred eCCCccccCcceEEEEEcC--C-Ce----eEEEEEecCCCeeEEEEe-eC---------------------CCeEEEEeC
Q 046773 353 ENRELENQNRRLAIVRRVD--T-FE----EVCRFSLRADRNVNVMGC-MN---------------------QGYALMCVE 403 (453)
Q Consensus 353 s~dg~~~~~~~~i~Iw~~~--t-g~----~v~~l~~~~~~v~~~~~~-~~---------------------~~~lls~s~ 403 (453)
+..| .+.++.+. . +. .+.....+.+.+..+... .+ .+++++++.
T Consensus 162 Tn~G-------~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe 234 (395)
T PF08596_consen 162 TNSG-------NVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSE 234 (395)
T ss_dssp ETTS-------EEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-S
T ss_pred eCCC-------CEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcc
Confidence 7777 65555332 1 11 111111222333332211 11 246677777
Q ss_pred CeEEEEECCCCeEEEEecccCCceE-E--EEe-----cCCCEEEEE-eCCcEEEEecC
Q 046773 404 GVIRVWEVEGGEYMYSFRERIGEEV-I--AFV-----GDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 404 ~tIrlWD~~tG~~l~tL~gh~~~~V-~--a~s-----~d~~~lasg-~D~~IklWDl~ 452 (453)
..|||....+.++.+... ..... . ++. ..+..|++= .||.|+++-+.
T Consensus 235 ~~irv~~~~~~k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP 290 (395)
T PF08596_consen 235 SDIRVFKPPKSKGAHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLP 290 (395)
T ss_dssp SEEEEE-TT---EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETT
T ss_pred cceEEEeCCCCcccceee--ccccccceEEEEeecccCCceEEEEEECCCcEEEEECC
Confidence 999999999998887765 22211 1 232 245567766 89999998663
No 408
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=31.10 E-value=2.8e+02 Score=26.71 Aligned_cols=90 Identities=16% Similarity=0.173 Sum_probs=47.4
Q ss_pred CcEEEEECCCCceEEEEeeccCCeEEEEEEecCCE-EEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEe
Q 046773 314 SRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEA-YIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGC 392 (453)
Q Consensus 314 ~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~-l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~ 392 (453)
..||+||+++|+.+...........-..+..-++. ++.-=.++ ..-++|.+|-+++..+...+++ -..+
T Consensus 68 S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~eg-------vaf~~d~~t~~~lg~~~y~GeG---WgLt 137 (262)
T COG3823 68 SKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEG-------VAFKYDADTLEELGRFSYEGEG---WGLT 137 (262)
T ss_pred ceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccc-------eeEEEChHHhhhhcccccCCcc---eeee
Confidence 47999999998765433111000000001111221 12212233 5667777777777766555422 2234
Q ss_pred eCCCeEEEEeC-CeEEEEECCC
Q 046773 393 MNQGYALMCVE-GVIRVWEVEG 413 (453)
Q Consensus 393 ~~~~~lls~s~-~tIrlWD~~t 413 (453)
.++..++++.+ .+++-=|.+|
T Consensus 138 ~d~~~LimsdGsatL~frdP~t 159 (262)
T COG3823 138 SDDKNLIMSDGSATLQFRDPKT 159 (262)
T ss_pred cCCcceEeeCCceEEEecCHHH
Confidence 56777777666 6777667765
No 409
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=30.03 E-value=3.6e+02 Score=28.46 Aligned_cols=18 Identities=28% Similarity=0.811 Sum_probs=16.1
Q ss_pred CeEEEEECCCCeEEEEec
Q 046773 404 GVIRVWEVEGGEYMYSFR 421 (453)
Q Consensus 404 ~tIrlWD~~tG~~l~tL~ 421 (453)
|.|.||.+.+|..+.++.
T Consensus 390 g~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 390 GILEVWSMRQGPRVAAFN 407 (415)
T ss_pred CeEEEEecCCCCEEEEEE
Confidence 899999999999888774
No 410
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=29.80 E-value=4.9e+02 Score=24.72 Aligned_cols=96 Identities=11% Similarity=0.141 Sum_probs=54.4
Q ss_pred cCCEEEEEeCCCccccCcceEEEEEcC-CCeeEEEEEecCCCeeEEEEeeCCCeEEEEeCCeEEEEECCCCeEEEEe---
Q 046773 345 NAEAYIVVENRELENQNRRLAIVRRVD-TFEEVCRFSLRADRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYMYSF--- 420 (453)
Q Consensus 345 ~g~~l~s~s~dg~~~~~~~~i~Iw~~~-tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~~tIrlWD~~tG~~l~tL--- 420 (453)
.++.++.|+.+| +-+.+.. ...........+ |..+...++-+.+++-+++++.+.|+.+-.....-
T Consensus 6 ~~~~L~vGt~~G--------l~~~~~~~~~~~~~i~~~~~--I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~ 75 (275)
T PF00780_consen 6 WGDRLLVGTEDG--------LYVYDLSDPSKPTRILKLSS--ITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPL 75 (275)
T ss_pred CCCEEEEEECCC--------EEEEEecCCccceeEeecce--EEEEEEecccCEEEEEcCCccEEEEchhhccccccccc
Confidence 456777777766 2344442 222222222222 66777677777777777799999998764333310
Q ss_pred -----------cccCCceEEEEe-----cCCCEEEEEeCCcEEEEec
Q 046773 421 -----------RERIGEEVIAFV-----GDDRHVAASCGTNIHLWDF 451 (453)
Q Consensus 421 -----------~gh~~~~V~a~s-----~d~~~lasg~D~~IklWDl 451 (453)
-..... |..|+ ...++|+.+..++|+|+..
T Consensus 76 ~~~~~~~~~~~~~~~~~-v~~f~~~~~~~~~~~L~va~kk~i~i~~~ 121 (275)
T PF00780_consen 76 AFPKSRSLPTKLPETKG-VSFFAVNGGHEGSRRLCVAVKKKILIYEW 121 (275)
T ss_pred cccccccccccccccCC-eeEEeeccccccceEEEEEECCEEEEEEE
Confidence 011233 55555 2334677666668888865
No 411
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=29.78 E-value=5.5e+02 Score=25.30 Aligned_cols=148 Identities=15% Similarity=0.157 Sum_probs=81.4
Q ss_pred eeccceeEEEEcCCceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcC
Q 046773 292 EFTEFVGRVRVTSHESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVD 371 (453)
Q Consensus 292 ~h~~~v~~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~ 371 (453)
...++|.+++.-.+ .++++...+|.++++...+.+.....+.....+.++...++.++.+..-. .+.+..++
T Consensus 86 ~~~g~V~ai~~~~~-~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~-------sv~~~~~~ 157 (321)
T PF03178_consen 86 EVKGPVTAICSFNG-RLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMK-------SVSLLRYD 157 (321)
T ss_dssp EESS-EEEEEEETT-EEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSS-------SEEEEEEE
T ss_pred eecCcceEhhhhCC-EEEEeecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEccc-------CEEEEEEE
Confidence 34578888874443 46666678999999998762333222222346788888889988887766 66666554
Q ss_pred C-CeeEEEEEe--cCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCC-------Ce-EEEE-ecccCCceEEEE---e--c
Q 046773 372 T-FEEVCRFSL--RADRNVNVMGCMNQGYALMCVE-GVIRVWEVEG-------GE-YMYS-FRERIGEEVIAF---V--G 433 (453)
Q Consensus 372 t-g~~v~~l~~--~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~t-------G~-~l~t-L~gh~~~~V~a~---s--~ 433 (453)
. +..+..+.- .+.++.++.+-.++..++.+.. +.|.+..... +. .+.. -.=|.+..|+++ + |
T Consensus 158 ~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~ 237 (321)
T PF03178_consen 158 EENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIP 237 (321)
T ss_dssp TTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS-
T ss_pred ccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeee
Confidence 3 333444432 2334555555546655444444 8888887652 22 3332 223566657776 2 3
Q ss_pred C--CC------EEEEE-eCCcEE
Q 046773 434 D--DR------HVAAS-CGTNIH 447 (453)
Q Consensus 434 d--~~------~lasg-~D~~Ik 447 (453)
. +. .++-+ .+|.|-
T Consensus 238 ~~~~~~~~~~~~i~~~T~~G~Ig 260 (321)
T PF03178_consen 238 RSGSSESPNRPQILYGTVDGSIG 260 (321)
T ss_dssp -SSSS-TTEEEEEEEEETTS-EE
T ss_pred cCCCCcccccceEEEEecCCEEE
Confidence 1 11 25545 788775
No 412
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=28.40 E-value=5.5e+02 Score=25.24 Aligned_cols=95 Identities=14% Similarity=0.097 Sum_probs=53.3
Q ss_pred EEEeCCCceeeEEEEeeCCCeEEEee--CCCCcEEecccccCCcceeeeeee--eeeccceeEEEEcCC-ceEEEEcC-C
Q 046773 241 IDFTGCSRYWVGLYAGLAGRAFHIWD--RQAEEVFVGGDLTDHNTVMGWRML--TEFTEFVGRVRVTSH-ESAVACTS-S 314 (453)
Q Consensus 241 v~Fs~dg~~~~~LaSgS~D~tIrvWD--~~tg~~~~g~~l~~~~~v~~w~~l--~~h~~~v~~v~~s~~-~~~vas~d-~ 314 (453)
++.+.|-+. .-+.-|-+.+|.-|| ..||.... +..+..++.. .++..|.+ ++++.. .+.+++-. +
T Consensus 163 l~Wd~d~K~--fY~iDsln~~V~a~dyd~~tG~~sn------r~~i~dlrk~~~~e~~~PDG-m~ID~eG~L~Va~~ng~ 233 (310)
T KOG4499|consen 163 LAWDSDAKK--FYYIDSLNYEVDAYDYDCPTGDLSN------RKVIFDLRKSQPFESLEPDG-MTIDTEGNLYVATFNGG 233 (310)
T ss_pred ccccccCcE--EEEEccCceEEeeeecCCCcccccC------cceeEEeccCCCcCCCCCCc-ceEccCCcEEEEEecCc
Confidence 566666554 245667788898898 77776321 1111111100 11222222 344433 36778765 6
Q ss_pred cEEEEECCCCceEEEEeeccCCeEEEEEEecC
Q 046773 315 RVITFDLRNQGMVLGERGYGRGLYVTSVDVNA 346 (453)
Q Consensus 315 tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g 346 (453)
+|...|+.||+.++.....+.++ +|..|-|
T Consensus 234 ~V~~~dp~tGK~L~eiklPt~qi--tsccFgG 263 (310)
T KOG4499|consen 234 TVQKVDPTTGKILLEIKLPTPQI--TSCCFGG 263 (310)
T ss_pred EEEEECCCCCcEEEEEEcCCCce--EEEEecC
Confidence 89999999998877765555554 4444444
No 413
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=27.28 E-value=1.3e+02 Score=18.93 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=20.7
Q ss_pred EEEEEecCCEEEEEeCCCcEEEEE
Q 046773 147 CRCLTLSDLYLACGFADGAVRLFD 170 (453)
Q Consensus 147 v~~lafs~~~LaSGS~D~TIrlWD 170 (453)
|.|++..+.++|.+-.-+-+|||.
T Consensus 4 i~aia~g~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 4 IEAIAAGDSWVAVATSAGYLRIFS 27 (27)
T ss_pred EEEEEccCCEEEEEeCCCeEEecC
Confidence 789999999999988888898873
No 414
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=25.83 E-value=55 Score=37.54 Aligned_cols=21 Identities=5% Similarity=0.188 Sum_probs=17.0
Q ss_pred eEEEEeC--CeEEEEECCCCeEE
Q 046773 397 YALMCVE--GVIRVWEVEGGEYM 417 (453)
Q Consensus 397 ~lls~s~--~tIrlWD~~tG~~l 417 (453)
+++++++ .-+|+|....-+|+
T Consensus 306 ~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 306 LRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred EEEecccCCcceeEeeccchhhh
Confidence 3456777 78999999988997
No 415
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=25.20 E-value=45 Score=34.58 Aligned_cols=35 Identities=14% Similarity=0.294 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhhhhhhHhHhhhhhHHhhcccchhcc
Q 046773 47 EALAAQVAIEASRSVGRLAAAAALANVFQVCSTWRAVS 84 (453)
Q Consensus 47 ~~l~~~~~~~~~~~~~~~~~~~~l~~~aqv~~~W~~l~ 84 (453)
+.||.||...|...|... .++.+...||+.||.-+
T Consensus 5 s~Lp~dll~~i~~~l~~~---~d~~~~~~vC~sWr~a~ 39 (373)
T PLN03215 5 STLPEELLHMIAGRLFSN---VELKRFRSICRSWRSSV 39 (373)
T ss_pred hhCCHHHHHHHHhhCCcH---HHHHHHHhhhhhHHHhc
Confidence 679999999999777543 37889999999999543
No 416
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=23.16 E-value=6.8e+02 Score=27.99 Aligned_cols=45 Identities=13% Similarity=0.310 Sum_probs=30.6
Q ss_pred CeEEEEECCCCeEEEEec-ccCCceEE----EEecCCCEE-EEEeCCcEEEE
Q 046773 404 GVIRVWEVEGGEYMYSFR-ERIGEEVI----AFVGDDRHV-AASCGTNIHLW 449 (453)
Q Consensus 404 ~tIrlWD~~tG~~l~tL~-gh~~~~V~----a~s~d~~~l-asg~D~~IklW 449 (453)
.++.|||+..+...+.-. ...+. |. ...||++.| +.|..+.|.|+
T Consensus 51 ~~LtIWD~~~~~lE~~~~f~~~~~-I~dLDWtst~d~qsiLaVGf~~~v~l~ 101 (631)
T PF12234_consen 51 SELTIWDTRSGVLEYEESFSEDDP-IRDLDWTSTPDGQSILAVGFPHHVLLY 101 (631)
T ss_pred CEEEEEEcCCcEEEEeeeecCCCc-eeeceeeecCCCCEEEEEEcCcEEEEE
Confidence 899999999998655321 22344 54 445899865 45577788776
No 417
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=22.70 E-value=1e+03 Score=26.05 Aligned_cols=139 Identities=12% Similarity=0.004 Sum_probs=67.5
Q ss_pred CeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceE-EEEcC------CcEEEEECCCCceEEEEee
Q 046773 260 RAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESA-VACTS------SRVITFDLRNQGMVLGERG 332 (453)
Q Consensus 260 ~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~-vas~d------~tIrlWDl~t~~~~~~~~g 332 (453)
.+|...|..+++-.....++.+. . .-++.+-++.+. +++.+ .++-.+|..+++-.....-
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r------------~-~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M 367 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPR------------C-RVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPM 367 (571)
T ss_pred ceeEEecCCcCcEeecCCCCccc------------c-cccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCc
Confidence 57889999888732222221111 1 112333333343 33333 3577889988753221111
Q ss_pred ccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCe--eEEEEEecCCCeeEEEEee-CCCeEEEEe------C
Q 046773 333 YGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFE--EVCRFSLRADRNVNVMGCM-NQGYALMCV------E 403 (453)
Q Consensus 333 ~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~--~v~~l~~~~~~v~~~~~~~-~~~~lls~s------~ 403 (453)
.............|..+++|+.+|....+ ++-.+|..+.+ .+..+.. .......+. ++..-++++ -
T Consensus 368 ~~~R~~~~v~~l~g~iYavGG~dg~~~l~--svE~YDp~~~~W~~va~m~~---~r~~~gv~~~~g~iYi~GG~~~~~~~ 442 (571)
T KOG4441|consen 368 NTKRSDFGVAVLDGKLYAVGGFDGEKSLN--SVECYDPVTNKWTPVAPMLT---RRSGHGVAVLGGKLYIIGGGDGSSNC 442 (571)
T ss_pred cCccccceeEEECCEEEEEeccccccccc--cEEEecCCCCcccccCCCCc---ceeeeEEEEECCEEEEEcCcCCCccc
Confidence 11111223345668888999998844444 67777766542 1111110 111122222 333223333 1
Q ss_pred -CeEEEEECCCCeE
Q 046773 404 -GVIRVWEVEGGEY 416 (453)
Q Consensus 404 -~tIrlWD~~tG~~ 416 (453)
.+|..+|..|++.
T Consensus 443 l~sve~YDP~t~~W 456 (571)
T KOG4441|consen 443 LNSVECYDPETNTW 456 (571)
T ss_pred cceEEEEcCCCCce
Confidence 5789999988754
No 418
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=21.26 E-value=1.7e+02 Score=19.34 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=18.4
Q ss_pred EEEecCCEEEEEeCCCcEEEEECCC
Q 046773 149 CLTLSDLYLACGFADGAVRLFDLTT 173 (453)
Q Consensus 149 ~lafs~~~LaSGS~D~TIrlWD~~t 173 (453)
..+..+..|..++.|+++...|++|
T Consensus 16 ~~~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 16 SPAVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp --EECTSEEEEE-TTSEEEEEETT-
T ss_pred CCEEECCEEEEEcCCCEEEEEeCCC
Confidence 4567788899999999999998875
No 419
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=20.63 E-value=2e+02 Score=31.20 Aligned_cols=58 Identities=19% Similarity=0.326 Sum_probs=40.1
Q ss_pred CCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEEeCCcEEEEecC
Q 046773 394 NQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAASCGTNIHLWDFG 452 (453)
Q Consensus 394 ~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg~D~~IklWDl~ 452 (453)
..+|+++++. |.|||+|--.-+.-..|++-.+. |. .++++|++|.+.....+.|-|+.
T Consensus 572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~a-Ik~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDA-IKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred cCceEEEecCCCceeeehhhcchhhhcCcccccc-eeeeEeecCCcEEEEeecceEEEEecc
Confidence 5688888887 99999997643444455655455 54 56789998865555677776653
No 420
>PHA02713 hypothetical protein; Provisional
Probab=20.06 E-value=1.1e+03 Score=25.52 Aligned_cols=46 Identities=7% Similarity=0.129 Sum_probs=26.9
Q ss_pred eEEEEECCC-Ce--EEEEecccCCceEEEEecCCCEEEEE-eCC--cEEEEec
Q 046773 405 VIRVWEVEG-GE--YMYSFRERIGEEVIAFVGDDRHVAAS-CGT--NIHLWDF 451 (453)
Q Consensus 405 tIrlWD~~t-G~--~l~tL~gh~~~~V~a~s~d~~~lasg-~D~--~IklWDl 451 (453)
+|..+|.++ .+ .+..++.+... ..+...++++.+.| .|+ +|..+|.
T Consensus 481 ~ve~Ydp~~~~~W~~~~~m~~~r~~-~~~~~~~~~iyv~Gg~~~~~~~e~yd~ 532 (557)
T PHA02713 481 CIFRYNTNTYNGWELITTTESRLSA-LHTILHDNTIMMLHCYESYMLQDTFNV 532 (557)
T ss_pred eEEEecCCCCCCeeEccccCccccc-ceeEEECCEEEEEeeecceeehhhcCc
Confidence 567899987 43 33444333222 33445688877777 776 5555554
Done!