Query 046775
Match_columns 771
No_of_seqs 905 out of 4829
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 04:21:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046775.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046775hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 9E-165 2E-169 1450.0 86.4 765 2-769 93-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 9E-140 2E-144 1208.6 70.3 613 159-771 84-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 5.7E-85 1.2E-89 771.2 68.3 574 57-635 47-623 (857)
4 PLN03081 pentatricopeptide (PP 100.0 5.7E-72 1.2E-76 645.0 55.5 473 59-534 85-561 (697)
5 PLN03218 maturation of RBCL 1; 100.0 2.3E-70 4.9E-75 633.1 55.4 524 27-569 367-916 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 5.4E-66 1.2E-70 596.7 59.0 549 128-690 367-964 (1060)
7 PF14432 DYW_deaminase: DYW fa 100.0 6.7E-43 1.5E-47 296.7 7.3 106 638-761 2-116 (116)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.7E-33 3.6E-38 339.8 66.1 614 5-632 237-867 (899)
9 TIGR02917 PEP_TPR_lipo putativ 100.0 6.6E-33 1.4E-37 334.6 67.6 610 8-632 206-833 (899)
10 PRK11447 cellulose synthase su 100.0 9E-24 2E-28 256.3 63.7 609 6-633 39-743 (1157)
11 PRK11447 cellulose synthase su 100.0 2.1E-23 4.6E-28 253.1 57.7 587 33-632 31-701 (1157)
12 PRK09782 bacteriophage N4 rece 99.9 1.3E-19 2.7E-24 210.2 59.2 560 41-631 55-706 (987)
13 PRK09782 bacteriophage N4 rece 99.9 7.2E-20 1.6E-24 212.1 55.0 597 7-633 56-742 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 9.6E-19 2.1E-23 179.5 35.7 445 167-624 53-512 (966)
15 KOG4626 O-linked N-acetylgluco 99.8 1.4E-17 3E-22 171.2 30.4 415 204-631 55-485 (966)
16 PRK11788 tetratricopeptide rep 99.8 4.4E-18 9.5E-23 184.3 28.0 303 174-516 47-363 (389)
17 TIGR00990 3a0801s09 mitochondr 99.8 1.6E-16 3.4E-21 181.5 41.1 249 377-631 307-571 (615)
18 PRK11788 tetratricopeptide rep 99.8 1E-17 2.2E-22 181.4 28.8 291 341-638 43-354 (389)
19 PRK10049 pgaA outer membrane p 99.8 2.5E-15 5.5E-20 174.7 41.9 186 444-631 247-456 (765)
20 KOG2002 TPR-containing nuclear 99.8 7.2E-14 1.6E-18 152.0 47.5 578 46-634 146-801 (1018)
21 PRK15174 Vi polysaccharide exp 99.8 3.5E-15 7.6E-20 169.8 38.8 350 244-602 17-386 (656)
22 PRK10049 pgaA outer membrane p 99.7 7.8E-15 1.7E-19 170.6 40.1 222 381-605 213-464 (765)
23 TIGR00990 3a0801s09 mitochondr 99.7 2.5E-14 5.5E-19 163.4 42.5 269 346-630 307-596 (615)
24 PRK15174 Vi polysaccharide exp 99.7 5.3E-15 1.2E-19 168.3 35.1 326 297-632 41-382 (656)
25 KOG2002 TPR-containing nuclear 99.7 1.4E-12 3.1E-17 142.0 51.3 522 101-632 167-746 (1018)
26 PRK14574 hmsH outer membrane p 99.7 2.9E-13 6.2E-18 154.5 45.9 189 443-631 301-513 (822)
27 KOG4422 Uncharacterized conser 99.7 9.3E-14 2E-18 137.5 34.2 312 6-346 126-481 (625)
28 KOG4422 Uncharacterized conser 99.7 2E-12 4.3E-17 128.2 40.1 327 61-430 116-464 (625)
29 PRK14574 hmsH outer membrane p 99.6 4.1E-12 8.8E-17 145.1 43.4 441 39-529 43-513 (822)
30 KOG0495 HAT repeat protein [RN 99.6 8.8E-10 1.9E-14 115.3 53.7 493 105-648 385-895 (913)
31 KOG4318 Bicoid mRNA stability 99.6 1.3E-11 2.7E-16 133.1 39.3 590 16-632 11-809 (1088)
32 KOG2076 RNA polymerase III tra 99.6 1.1E-09 2.4E-14 119.3 49.2 311 9-323 153-508 (895)
33 KOG4318 Bicoid mRNA stability 99.5 5.4E-11 1.2E-15 128.3 35.8 533 82-641 11-603 (1088)
34 KOG0495 HAT repeat protein [RN 99.5 1.8E-08 3.9E-13 105.7 52.5 565 44-642 265-855 (913)
35 KOG2076 RNA polymerase III tra 99.5 6.4E-10 1.4E-14 121.0 43.5 344 109-456 152-548 (895)
36 KOG2003 TPR repeat-containing 99.5 1E-11 2.3E-16 123.7 27.0 271 342-618 428-710 (840)
37 PF13429 TPR_15: Tetratricopep 99.5 1E-13 2.2E-18 142.2 12.3 253 371-628 15-274 (280)
38 KOG0547 Translocase of outer m 99.4 5.7E-10 1.2E-14 113.1 31.5 212 412-629 339-564 (606)
39 PRK10747 putative protoheme IX 99.4 2.2E-10 4.7E-15 123.2 27.7 273 346-628 97-387 (398)
40 PRK10747 putative protoheme IX 99.4 2.9E-10 6.3E-15 122.2 28.7 215 340-560 160-385 (398)
41 KOG2003 TPR repeat-containing 99.4 3.1E-09 6.7E-14 106.4 32.7 273 272-551 428-709 (840)
42 KOG1155 Anaphase-promoting com 99.4 2.2E-08 4.8E-13 101.2 38.2 286 306-600 235-539 (559)
43 KOG1915 Cell cycle control pro 99.4 8.4E-08 1.8E-12 97.2 41.5 479 143-630 85-624 (677)
44 KOG1126 DNA-binding cell divis 99.3 9.8E-11 2.1E-15 123.5 21.6 273 348-632 334-621 (638)
45 KOG1155 Anaphase-promoting com 99.3 1.8E-09 3.9E-14 109.0 28.7 279 339-626 233-531 (559)
46 KOG1126 DNA-binding cell divis 99.3 2E-10 4.3E-15 121.2 22.7 244 379-631 334-586 (638)
47 KOG0985 Vesicle coat protein c 99.3 1.6E-07 3.6E-12 102.9 45.2 471 134-641 609-1259(1666)
48 TIGR00540 hemY_coli hemY prote 99.3 8.6E-10 1.9E-14 119.2 27.9 289 276-596 97-398 (409)
49 PF13429 TPR_15: Tetratricopep 99.3 1E-11 2.2E-16 127.4 12.1 211 312-527 58-275 (280)
50 KOG1915 Cell cycle control pro 99.3 3.2E-07 7E-12 93.1 42.8 414 73-494 85-536 (677)
51 KOG2047 mRNA splicing factor [ 99.3 6.1E-07 1.3E-11 94.5 46.1 508 30-590 102-716 (835)
52 TIGR00540 hemY_coli hemY prote 99.3 4.1E-09 8.8E-14 114.0 32.0 278 345-629 96-397 (409)
53 TIGR02521 type_IV_pilW type IV 99.3 4.7E-10 1E-14 111.6 22.9 200 431-631 28-232 (234)
54 KOG1173 Anaphase-promoting com 99.3 8.6E-09 1.9E-13 106.8 30.0 251 373-629 253-516 (611)
55 PF13041 PPR_2: PPR repeat fam 99.2 2.5E-11 5.5E-16 87.3 6.8 50 463-512 1-50 (50)
56 COG2956 Predicted N-acetylgluc 99.2 1.2E-08 2.6E-13 98.6 26.3 264 276-546 48-325 (389)
57 KOG1174 Anaphase-promoting com 99.2 1.1E-07 2.4E-12 94.8 33.2 306 294-605 190-508 (564)
58 PF13041 PPR_2: PPR repeat fam 99.2 2.9E-11 6.2E-16 87.1 6.0 50 160-209 1-50 (50)
59 COG3071 HemY Uncharacterized e 99.2 4.1E-08 8.8E-13 98.1 29.0 281 276-562 97-387 (400)
60 KOG1840 Kinesin light chain [C 99.2 5.6E-09 1.2E-13 111.7 24.5 230 400-629 200-477 (508)
61 PRK12370 invasion protein regu 99.2 5.1E-09 1.1E-13 117.7 25.3 244 379-632 276-536 (553)
62 KOG1173 Anaphase-promoting com 99.2 2.8E-08 6.1E-13 103.1 27.8 470 11-536 32-522 (611)
63 COG3071 HemY Uncharacterized e 99.2 4.3E-08 9.4E-13 97.9 27.9 291 175-499 97-395 (400)
64 KOG3785 Uncharacterized conser 99.1 2.4E-07 5.1E-12 90.6 31.0 440 137-638 63-521 (557)
65 KOG0547 Translocase of outer m 99.1 1.8E-07 3.9E-12 95.4 29.7 400 65-527 119-564 (606)
66 PRK11189 lipoprotein NlpI; Pro 99.1 1.2E-08 2.7E-13 104.8 22.0 211 414-633 41-267 (296)
67 COG2956 Predicted N-acetylgluc 99.1 3E-07 6.6E-12 89.1 27.4 303 311-651 48-367 (389)
68 KOG3616 Selective LIM binding 99.0 9.3E-07 2E-11 93.9 32.0 437 42-561 456-907 (1636)
69 PRK12370 invasion protein regu 99.0 2.9E-08 6.4E-13 111.5 22.8 210 413-630 275-501 (553)
70 TIGR02521 type_IV_pilW type IV 99.0 8.2E-08 1.8E-12 95.3 23.0 198 365-598 32-233 (234)
71 KOG2376 Signal recognition par 99.0 7.5E-06 1.6E-10 85.9 36.6 428 172-624 22-513 (652)
72 KOG1129 TPR repeat-containing 99.0 2.1E-08 4.6E-13 96.7 16.8 228 368-632 227-459 (478)
73 KOG0985 Vesicle coat protein c 99.0 4.6E-05 1E-09 84.4 43.7 506 33-562 609-1305(1666)
74 KOG4162 Predicted calmodulin-b 99.0 6E-06 1.3E-10 89.3 35.2 397 227-631 318-783 (799)
75 KOG2047 mRNA splicing factor [ 98.9 2.6E-05 5.6E-10 82.6 38.5 263 365-631 388-687 (835)
76 COG3063 PilF Tfp pilus assembl 98.9 9E-08 2E-12 88.7 17.7 162 467-633 37-204 (250)
77 KOG4162 Predicted calmodulin-b 98.9 1.2E-05 2.6E-10 87.1 36.0 439 127-603 319-789 (799)
78 PRK11189 lipoprotein NlpI; Pro 98.9 5.5E-07 1.2E-11 92.6 24.6 218 378-603 40-271 (296)
79 KOG1840 Kinesin light chain [C 98.9 2.8E-07 6.1E-12 98.9 22.5 233 333-596 199-478 (508)
80 KOG1127 TPR repeat-containing 98.9 4.3E-06 9.4E-11 92.4 31.3 564 15-625 476-1098(1238)
81 KOG3785 Uncharacterized conser 98.8 3.5E-06 7.5E-11 82.6 26.0 95 439-539 398-497 (557)
82 KOG3616 Selective LIM binding 98.8 4.1E-05 9E-10 81.8 35.8 235 336-632 768-1025(1636)
83 KOG2376 Signal recognition par 98.8 8.9E-05 1.9E-09 78.1 36.0 180 337-522 313-513 (652)
84 KOG1156 N-terminal acetyltrans 98.8 9.2E-05 2E-09 78.9 36.4 435 108-591 19-505 (700)
85 COG3063 PilF Tfp pilus assembl 98.8 2.2E-06 4.7E-11 79.7 20.9 195 405-603 41-242 (250)
86 KOG1129 TPR repeat-containing 98.7 3E-07 6.4E-12 89.0 15.2 227 336-567 226-461 (478)
87 KOG3617 WD40 and TPR repeat-co 98.7 0.00048 1E-08 75.1 38.6 539 29-631 725-1359(1416)
88 KOG1174 Anaphase-promoting com 98.6 0.00017 3.7E-09 72.6 30.8 82 451-537 421-505 (564)
89 PF12569 NARP1: NMDA receptor- 98.6 0.00028 6.1E-09 77.1 35.1 411 170-626 12-515 (517)
90 cd05804 StaR_like StaR_like; a 98.6 6.3E-05 1.4E-09 80.2 29.1 291 336-632 9-337 (355)
91 KOG1156 N-terminal acetyltrans 98.5 0.00039 8.5E-09 74.2 32.4 215 211-463 21-248 (700)
92 KOG0548 Molecular co-chaperone 98.5 0.00022 4.8E-09 74.6 30.1 214 403-631 228-455 (539)
93 PF04733 Coatomer_E: Coatomer 98.5 4.7E-06 1E-10 84.5 17.9 248 343-631 11-265 (290)
94 KOG1127 TPR repeat-containing 98.5 0.0014 3E-08 73.4 36.9 192 263-459 775-992 (1238)
95 PRK04841 transcriptional regul 98.5 0.0057 1.2E-07 74.2 47.0 225 408-632 500-761 (903)
96 KOG0624 dsRNA-activated protei 98.5 0.00018 3.9E-09 70.7 26.6 306 269-603 44-376 (504)
97 PF12854 PPR_1: PPR repeat 98.5 1.8E-07 3.8E-12 60.4 3.6 34 24-57 1-34 (34)
98 PRK15359 type III secretion sy 98.5 3.4E-06 7.4E-11 76.3 13.2 123 485-614 13-138 (144)
99 PF12569 NARP1: NMDA receptor- 98.4 0.0001 2.2E-09 80.5 26.3 286 240-530 12-335 (517)
100 KOG1914 mRNA cleavage and poly 98.4 0.0041 9E-08 65.3 36.3 173 380-554 347-528 (656)
101 TIGR03302 OM_YfiO outer membra 98.4 2E-05 4.4E-10 78.4 19.1 181 432-631 31-232 (235)
102 PF12854 PPR_1: PPR repeat 98.4 3.5E-07 7.5E-12 59.0 4.0 33 531-563 2-34 (34)
103 KOG1128 Uncharacterized conser 98.4 6.9E-06 1.5E-10 88.3 15.9 220 329-598 394-617 (777)
104 KOG0548 Molecular co-chaperone 98.4 0.00062 1.3E-08 71.3 29.5 166 440-615 304-473 (539)
105 KOG3617 WD40 and TPR repeat-co 98.4 0.0037 8.1E-08 68.5 35.7 222 5-259 738-994 (1416)
106 PRK04841 transcriptional regul 98.4 0.0037 8.1E-08 75.8 41.5 194 336-529 534-760 (903)
107 PF04733 Coatomer_E: Coatomer 98.4 1.5E-05 3.2E-10 80.9 17.2 214 338-562 40-262 (290)
108 KOG1070 rRNA processing protei 98.4 2.5E-05 5.5E-10 89.5 20.4 206 423-633 1448-1665(1710)
109 KOG1125 TPR repeat-containing 98.4 6.4E-06 1.4E-10 86.4 14.6 218 410-630 296-526 (579)
110 PLN02789 farnesyltranstransfer 98.4 9.2E-05 2E-09 76.2 23.0 196 414-615 52-268 (320)
111 cd05804 StaR_like StaR_like; a 98.4 0.00063 1.4E-08 72.5 30.6 20 578-597 317-336 (355)
112 PRK10370 formate-dependent nit 98.3 2.4E-05 5.1E-10 74.9 16.3 146 472-632 23-174 (198)
113 PRK15363 pathogenicity island 98.3 1.4E-05 2.9E-10 71.1 12.0 118 536-676 35-154 (157)
114 KOG1125 TPR repeat-containing 98.3 4.6E-05 9.9E-10 80.2 17.8 212 311-527 298-525 (579)
115 PRK15359 type III secretion sy 98.2 2.8E-05 6E-10 70.4 13.6 99 532-632 22-122 (144)
116 TIGR03302 OM_YfiO outer membra 98.2 8.8E-05 1.9E-09 73.9 17.7 180 398-599 32-234 (235)
117 TIGR00756 PPR pentatricopeptid 98.2 3.1E-06 6.7E-11 55.5 4.5 34 466-499 1-34 (35)
118 KOG4340 Uncharacterized conser 98.2 0.00039 8.4E-09 67.1 19.8 81 545-626 250-334 (459)
119 PRK15179 Vi polysaccharide bio 98.1 0.00011 2.4E-09 83.3 19.1 189 400-606 28-226 (694)
120 PRK10370 formate-dependent nit 98.1 0.00017 3.8E-09 69.0 17.6 156 441-608 23-184 (198)
121 KOG1128 Uncharacterized conser 98.1 6.6E-05 1.4E-09 81.0 15.8 132 412-545 498-632 (777)
122 TIGR00756 PPR pentatricopeptid 98.1 5.1E-06 1.1E-10 54.4 4.5 35 62-96 1-35 (35)
123 KOG4340 Uncharacterized conser 98.1 0.0016 3.4E-08 63.0 22.6 174 442-630 249-442 (459)
124 KOG1070 rRNA processing protei 98.1 0.00053 1.1E-08 79.2 22.6 203 298-501 1458-1670(1710)
125 PRK15179 Vi polysaccharide bio 98.1 0.00048 1E-08 78.3 21.8 143 429-576 81-230 (694)
126 COG4783 Putative Zn-dependent 98.0 0.00088 1.9E-08 69.6 21.3 146 465-632 306-455 (484)
127 KOG0624 dsRNA-activated protei 98.0 0.0024 5.2E-08 63.1 22.8 250 439-732 43-315 (504)
128 COG4783 Putative Zn-dependent 98.0 0.00048 1E-08 71.5 19.0 123 506-631 312-437 (484)
129 COG5010 TadD Flp pilus assembl 98.0 0.00022 4.7E-09 68.2 15.3 135 496-632 62-198 (257)
130 TIGR02552 LcrH_SycD type III s 98.0 4.4E-05 9.5E-10 68.5 10.4 100 532-631 12-114 (135)
131 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00021 4.5E-09 75.0 16.5 122 503-629 172-295 (395)
132 COG5010 TadD Flp pilus assembl 98.0 0.00075 1.6E-08 64.6 18.3 177 438-618 70-251 (257)
133 PLN02789 farnesyltranstransfer 98.0 0.0027 5.8E-08 65.5 23.8 203 371-580 44-267 (320)
134 PRK14720 transcript cleavage f 97.9 0.0024 5.3E-08 73.4 24.9 164 436-632 118-285 (906)
135 PF13812 PPR_3: Pentatricopept 97.9 1.5E-05 3.3E-10 51.7 4.5 33 466-498 2-34 (34)
136 PF13812 PPR_3: Pentatricopept 97.9 1.5E-05 3.2E-10 51.8 4.2 34 61-94 1-34 (34)
137 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00031 6.7E-09 73.8 15.3 127 435-566 170-298 (395)
138 TIGR02552 LcrH_SycD type III s 97.8 0.00067 1.4E-08 60.8 13.5 114 487-604 5-121 (135)
139 PF01535 PPR: PPR repeat; Int 97.7 3.9E-05 8.5E-10 48.5 3.4 31 466-496 1-31 (31)
140 KOG3060 Uncharacterized conser 97.7 0.0058 1.3E-07 58.2 18.3 164 440-606 58-229 (289)
141 KOG3060 Uncharacterized conser 97.7 0.0021 4.6E-08 61.0 15.4 169 447-620 25-206 (289)
142 PF01535 PPR: PPR repeat; Int 97.7 5.7E-05 1.2E-09 47.7 3.5 31 62-92 1-31 (31)
143 KOG0553 TPR repeat-containing 97.7 0.00058 1.3E-08 66.6 11.8 113 483-610 76-191 (304)
144 PLN03088 SGT1, suppressor of 97.6 0.00064 1.4E-08 71.7 12.6 83 547-629 13-97 (356)
145 COG3898 Uncharacterized membra 97.6 0.049 1.1E-06 55.2 24.0 237 377-625 133-386 (531)
146 KOG2053 Mitochondrial inherita 97.6 0.24 5.1E-06 55.9 41.2 167 403-574 440-619 (932)
147 cd00189 TPR Tetratricopeptide 97.6 0.00063 1.4E-08 55.9 9.6 92 539-630 3-96 (100)
148 KOG0550 Molecular chaperone (D 97.5 0.0022 4.8E-08 65.1 14.1 89 544-632 257-351 (486)
149 PF12895 Apc3: Anaphase-promot 97.5 0.00013 2.7E-09 59.2 4.2 77 550-627 3-83 (84)
150 PF13414 TPR_11: TPR repeat; P 97.5 0.00029 6.2E-09 54.5 6.0 64 567-630 2-66 (69)
151 PF13431 TPR_17: Tetratricopep 97.5 8.6E-05 1.9E-09 47.8 2.4 32 591-622 2-33 (34)
152 PRK10153 DNA-binding transcrip 97.5 0.0041 8.9E-08 68.6 16.9 151 461-643 333-493 (517)
153 PF09976 TPR_21: Tetratricopep 97.5 0.0028 6E-08 57.5 13.2 51 576-627 93-143 (145)
154 KOG3081 Vesicle coat complex C 97.5 0.014 3E-07 56.1 17.8 144 441-623 115-262 (299)
155 KOG2053 Mitochondrial inherita 97.4 0.33 7.3E-06 54.7 36.4 122 143-268 21-150 (932)
156 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.0022 4.8E-08 55.7 11.7 100 506-605 8-113 (119)
157 PF04840 Vps16_C: Vps16, C-ter 97.4 0.21 4.5E-06 51.5 28.5 121 438-578 181-301 (319)
158 PRK14720 transcript cleavage f 97.4 0.064 1.4E-06 62.1 25.4 147 199-375 118-268 (906)
159 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.0019 4.1E-08 56.1 10.5 96 537-632 3-106 (119)
160 PF13432 TPR_16: Tetratricopep 97.3 0.00053 1.2E-08 52.3 6.0 57 575-631 4-60 (65)
161 PRK02603 photosystem I assembl 97.3 0.0044 9.5E-08 58.1 13.3 129 465-617 35-166 (172)
162 CHL00033 ycf3 photosystem I as 97.3 0.0073 1.6E-07 56.3 14.6 110 465-602 35-154 (168)
163 PF09976 TPR_21: Tetratricopep 97.3 0.01 2.2E-07 53.8 15.0 114 478-594 24-144 (145)
164 PLN03088 SGT1, suppressor of 97.3 0.0026 5.6E-08 67.2 12.3 102 511-615 13-117 (356)
165 KOG3081 Vesicle coat complex C 97.2 0.032 6.9E-07 53.7 17.6 161 465-632 72-237 (299)
166 KOG1914 mRNA cleavage and poly 97.2 0.42 9E-06 50.9 35.8 210 416-628 310-536 (656)
167 PF05843 Suf: Suppressor of fo 97.2 0.012 2.7E-07 59.8 15.9 144 466-613 2-151 (280)
168 PRK15331 chaperone protein Sic 97.2 0.0025 5.3E-08 57.2 9.1 100 531-630 31-133 (165)
169 COG4235 Cytochrome c biogenesi 97.2 0.003 6.6E-08 62.2 10.4 107 534-640 154-265 (287)
170 PF13432 TPR_16: Tetratricopep 97.2 0.0014 3E-08 50.0 6.5 61 542-602 3-65 (65)
171 CHL00033 ycf3 photosystem I as 97.1 0.0031 6.8E-08 58.8 9.9 92 536-627 35-138 (168)
172 KOG2280 Vacuolar assembly/sort 97.1 0.58 1.2E-05 51.8 27.5 341 191-561 426-795 (829)
173 PRK02603 photosystem I assembl 97.1 0.004 8.8E-08 58.3 10.5 80 538-617 37-121 (172)
174 COG4700 Uncharacterized protei 97.1 0.0092 2E-07 53.9 11.8 103 528-630 81-188 (251)
175 KOG1538 Uncharacterized conser 97.1 0.098 2.1E-06 56.3 20.9 194 341-596 640-845 (1081)
176 PF13371 TPR_9: Tetratricopept 97.1 0.0015 3.2E-08 51.2 6.0 57 576-632 3-59 (73)
177 PRK10153 DNA-binding transcrip 97.1 0.012 2.6E-07 64.9 15.0 49 584-632 400-450 (517)
178 PF14559 TPR_19: Tetratricopep 97.0 0.0017 3.6E-08 50.0 6.1 51 580-630 3-53 (68)
179 PF04840 Vps16_C: Vps16, C-ter 97.0 0.54 1.2E-05 48.5 27.2 106 337-458 181-286 (319)
180 cd00189 TPR Tetratricopeptide 96.9 0.0098 2.1E-07 48.5 10.5 88 468-560 3-92 (100)
181 KOG0553 TPR repeat-containing 96.9 0.0086 1.9E-07 58.7 10.8 99 473-576 89-190 (304)
182 PF14559 TPR_19: Tetratricopep 96.9 0.00096 2.1E-08 51.3 3.6 61 549-609 4-66 (68)
183 PF06239 ECSIT: Evolutionarily 96.9 0.018 3.9E-07 54.1 12.1 123 397-534 45-173 (228)
184 PF12895 Apc3: Anaphase-promot 96.9 0.0016 3.4E-08 52.7 4.8 80 478-561 2-83 (84)
185 PF12688 TPR_5: Tetratrico pep 96.8 0.024 5.2E-07 48.8 11.5 91 471-561 7-100 (120)
186 PF08579 RPM2: Mitochondrial r 96.7 0.014 3E-07 48.5 9.0 80 64-143 28-116 (120)
187 PF10037 MRP-S27: Mitochondria 96.7 0.03 6.5E-07 59.4 13.8 120 394-513 61-186 (429)
188 PRK15363 pathogenicity island 96.7 0.017 3.8E-07 51.6 10.0 93 437-531 38-134 (157)
189 PF13428 TPR_14: Tetratricopep 96.6 0.0042 9.1E-08 42.8 4.7 42 569-610 2-43 (44)
190 PF10037 MRP-S27: Mitochondria 96.6 0.026 5.6E-07 59.9 12.4 120 293-412 61-186 (429)
191 PF05843 Suf: Suppressor of fo 96.6 0.049 1.1E-06 55.4 14.2 129 367-499 4-139 (280)
192 KOG2796 Uncharacterized conser 96.6 0.18 3.8E-06 48.6 16.3 167 336-504 139-323 (366)
193 PF13281 DUF4071: Domain of un 96.5 0.66 1.4E-05 48.4 21.9 186 371-602 148-339 (374)
194 COG4700 Uncharacterized protei 96.5 0.25 5.3E-06 45.1 15.7 129 497-630 86-221 (251)
195 KOG1538 Uncharacterized conser 96.3 0.52 1.1E-05 51.1 19.9 106 375-493 727-845 (1081)
196 PF03704 BTAD: Bacterial trans 96.3 0.061 1.3E-06 48.8 11.9 109 510-630 16-124 (146)
197 PF13414 TPR_11: TPR repeat; P 96.3 0.027 5.8E-07 43.3 8.0 63 464-528 2-66 (69)
198 PRK10803 tol-pal system protei 96.3 0.064 1.4E-06 53.6 12.7 103 468-603 146-252 (263)
199 KOG2041 WD40 repeat protein [G 96.3 2.5 5.4E-05 46.5 29.1 123 441-574 930-1063(1189)
200 PF06239 ECSIT: Evolutionarily 96.2 0.025 5.5E-07 53.1 8.7 98 49-146 33-153 (228)
201 PRK10803 tol-pal system protei 96.2 0.031 6.8E-07 55.8 10.1 94 538-631 145-246 (263)
202 PLN03098 LPA1 LOW PSII ACCUMUL 96.2 0.016 3.5E-07 60.8 8.2 64 568-631 75-141 (453)
203 PRK10866 outer membrane biogen 96.2 0.28 6.1E-06 48.6 16.7 55 339-393 38-98 (243)
204 PF12688 TPR_5: Tetratrico pep 96.2 0.11 2.3E-06 44.9 11.8 106 370-476 7-117 (120)
205 PF08579 RPM2: Mitochondrial r 96.2 0.069 1.5E-06 44.5 9.8 79 368-446 29-116 (120)
206 PF13371 TPR_9: Tetratricopept 96.1 0.018 4E-07 44.8 6.5 65 544-608 3-69 (73)
207 PF14938 SNAP: Soluble NSF att 96.1 0.22 4.7E-06 50.9 16.1 128 470-612 99-242 (282)
208 KOG0550 Molecular chaperone (D 96.1 1.1 2.4E-05 46.2 20.1 210 410-623 180-435 (486)
209 KOG1130 Predicted G-alpha GTPa 96.1 0.042 9.1E-07 55.9 10.0 128 502-629 197-342 (639)
210 KOG4555 TPR repeat-containing 96.1 0.05 1.1E-06 46.2 8.8 90 544-633 51-146 (175)
211 PRK10866 outer membrane biogen 96.1 0.32 7E-06 48.2 16.4 172 439-629 37-239 (243)
212 PF14938 SNAP: Soluble NSF att 96.0 0.55 1.2E-05 47.9 18.4 90 438-527 118-223 (282)
213 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.84 1.8E-05 48.3 19.1 63 431-493 72-140 (453)
214 KOG2796 Uncharacterized conser 95.8 0.37 8E-06 46.4 14.4 185 14-204 124-326 (366)
215 COG3898 Uncharacterized membra 95.7 3.1 6.6E-05 42.8 26.9 220 344-572 165-399 (531)
216 KOG0543 FKBP-type peptidyl-pro 95.5 0.095 2.1E-06 53.9 10.1 82 570-677 259-340 (397)
217 COG0457 NrfG FOG: TPR repeat [ 95.3 2.9 6.3E-05 40.3 26.3 194 434-631 59-265 (291)
218 PRK11906 transcriptional regul 95.2 0.89 1.9E-05 48.2 16.2 156 466-625 252-430 (458)
219 KOG1920 IkappaB kinase complex 95.1 4.3 9.3E-05 47.8 22.3 157 347-562 894-1052(1265)
220 PF12921 ATP13: Mitochondrial 95.1 0.06 1.3E-06 46.9 6.2 93 435-543 3-95 (126)
221 PF12921 ATP13: Mitochondrial 95.0 0.16 3.4E-06 44.3 8.7 84 499-582 1-102 (126)
222 PF04053 Coatomer_WDAD: Coatom 94.9 0.21 4.5E-06 54.0 11.0 132 475-632 271-403 (443)
223 PF13525 YfiO: Outer membrane 94.8 1.6 3.5E-05 41.9 16.1 141 469-631 9-170 (203)
224 KOG2041 WD40 repeat protein [G 94.7 8.6 0.00019 42.6 27.0 37 372-408 931-971 (1189)
225 PF09205 DUF1955: Domain of un 94.7 2.3 4.9E-05 36.7 14.0 140 476-634 13-152 (161)
226 PF07079 DUF1347: Protein of u 94.5 7.4 0.00016 41.0 39.0 352 202-573 133-530 (549)
227 PF13424 TPR_12: Tetratricopep 94.4 0.042 9E-07 43.5 3.4 58 571-628 8-72 (78)
228 KOG2280 Vacuolar assembly/sort 94.4 11 0.00023 42.4 28.5 318 291-626 425-794 (829)
229 smart00299 CLH Clathrin heavy 94.4 1.3 2.8E-05 39.7 13.4 66 501-579 70-136 (140)
230 KOG2066 Vacuolar assembly/sort 94.3 12 0.00025 42.4 24.7 74 234-310 394-467 (846)
231 PF13424 TPR_12: Tetratricopep 94.3 0.14 3E-06 40.5 6.1 22 539-560 49-70 (78)
232 KOG1920 IkappaB kinase complex 94.3 11 0.00025 44.5 23.0 162 246-465 894-1057(1265)
233 PF08631 SPO22: Meiosis protei 94.2 7.3 0.00016 39.6 23.8 98 401-500 86-192 (278)
234 PF03704 BTAD: Bacterial trans 94.2 0.41 8.9E-06 43.3 9.8 69 469-538 66-138 (146)
235 PF13525 YfiO: Outer membrane 94.1 3.3 7.2E-05 39.8 16.6 166 439-623 10-199 (203)
236 KOG2114 Vacuolar assembly/sort 94.0 14 0.0003 42.2 28.2 115 36-158 340-458 (933)
237 KOG1130 Predicted G-alpha GTPa 94.0 0.39 8.5E-06 49.2 9.8 127 401-527 197-342 (639)
238 PRK11906 transcriptional regul 93.9 0.76 1.6E-05 48.7 12.2 117 515-631 273-401 (458)
239 KOG3941 Intermediate in Toll s 93.9 0.32 7E-06 47.3 8.6 114 45-158 49-186 (406)
240 PF04184 ST7: ST7 protein; In 93.7 2 4.2E-05 45.8 14.5 99 506-604 265-382 (539)
241 KOG1258 mRNA processing protei 93.6 14 0.0003 40.6 31.0 183 432-617 295-490 (577)
242 COG0457 NrfG FOG: TPR repeat [ 93.5 7.3 0.00016 37.4 25.1 196 400-600 60-268 (291)
243 COG4235 Cytochrome c biogenesi 93.4 2.8 6.1E-05 41.8 14.5 96 431-528 153-255 (287)
244 COG4105 ComL DNA uptake lipopr 93.3 8.7 0.00019 37.6 17.3 140 466-631 35-196 (254)
245 PF09613 HrpB1_HrpK: Bacterial 93.2 2.3 5E-05 38.4 12.3 98 503-604 13-112 (160)
246 COG4785 NlpI Lipoprotein NlpI, 93.1 3.7 8E-05 38.7 13.7 160 466-633 100-268 (297)
247 PF00515 TPR_1: Tetratricopept 93.0 0.18 3.8E-06 32.2 3.9 33 569-601 2-34 (34)
248 PF07719 TPR_2: Tetratricopept 92.9 0.26 5.6E-06 31.3 4.6 32 570-601 3-34 (34)
249 PF13512 TPR_18: Tetratricopep 92.7 1.1 2.4E-05 39.6 9.4 58 546-603 20-82 (142)
250 KOG0543 FKBP-type peptidyl-pro 92.6 0.97 2.1E-05 46.7 10.3 137 472-630 215-354 (397)
251 COG3118 Thioredoxin domain-con 92.5 3.5 7.6E-05 41.0 13.4 113 510-629 144-263 (304)
252 KOG3941 Intermediate in Toll s 92.3 1.1 2.4E-05 43.8 9.5 110 453-563 53-186 (406)
253 PF10300 DUF3808: Protein of u 92.1 0.95 2.1E-05 49.7 10.4 161 467-630 190-368 (468)
254 PF04097 Nic96: Nup93/Nic96; 92.1 19 0.0004 41.3 21.0 44 167-211 116-159 (613)
255 PF13512 TPR_18: Tetratricopep 92.0 3.8 8.2E-05 36.3 11.9 114 472-602 17-133 (142)
256 COG3118 Thioredoxin domain-con 92.0 12 0.00025 37.5 16.3 154 473-628 142-299 (304)
257 COG1729 Uncharacterized protei 92.0 1.3 2.9E-05 43.4 10.0 93 467-562 144-241 (262)
258 PRK12798 chemotaxis protein; R 91.6 20 0.00044 37.7 21.3 166 447-615 125-303 (421)
259 PF04097 Nic96: Nup93/Nic96; 91.4 7 0.00015 44.7 16.6 85 372-461 266-354 (613)
260 COG4105 ComL DNA uptake lipopr 91.3 15 0.00033 35.9 20.4 180 432-632 33-234 (254)
261 smart00299 CLH Clathrin heavy 91.3 10 0.00022 33.7 15.9 128 466-613 8-136 (140)
262 KOG4234 TPR repeat-containing 91.2 1.2 2.6E-05 41.3 8.1 88 545-632 104-198 (271)
263 KOG1585 Protein required for f 91.0 16 0.00034 35.4 15.7 21 436-456 93-113 (308)
264 PRK09687 putative lyase; Provi 90.8 20 0.00044 36.3 24.9 76 330-410 203-278 (280)
265 PF07079 DUF1347: Protein of u 90.8 25 0.00054 37.3 34.5 72 556-628 444-521 (549)
266 PF04053 Coatomer_WDAD: Coatom 90.3 4.7 0.0001 43.8 13.2 103 341-460 326-428 (443)
267 KOG1941 Acetylcholine receptor 90.3 5.9 0.00013 40.4 12.6 224 374-597 16-275 (518)
268 PRK15331 chaperone protein Sic 90.3 1.2 2.6E-05 40.4 7.2 83 445-528 48-133 (165)
269 PF10300 DUF3808: Protein of u 90.1 18 0.00039 39.9 17.9 147 436-584 190-356 (468)
270 PF13281 DUF4071: Domain of un 90.0 16 0.00035 38.3 16.2 72 338-409 146-227 (374)
271 PF13170 DUF4003: Protein of u 90.0 9.3 0.0002 39.0 14.4 64 481-545 159-226 (297)
272 PF04184 ST7: ST7 protein; In 89.7 8.9 0.00019 41.1 14.0 217 479-714 182-412 (539)
273 KOG2610 Uncharacterized conser 89.4 3.4 7.3E-05 41.6 10.1 160 477-639 115-284 (491)
274 PF09613 HrpB1_HrpK: Bacterial 89.4 2.5 5.4E-05 38.2 8.5 63 570-632 9-74 (160)
275 COG1729 Uncharacterized protei 89.1 4.1 9E-05 40.1 10.5 101 503-604 145-251 (262)
276 PF02259 FAT: FAT domain; Int 89.1 33 0.00071 36.1 21.2 146 463-614 144-304 (352)
277 PF13176 TPR_7: Tetratricopept 88.6 0.56 1.2E-05 30.4 3.0 25 604-628 1-25 (36)
278 PRK09687 putative lyase; Provi 88.5 30 0.00066 35.1 24.9 130 370-511 148-278 (280)
279 TIGR02561 HrpB1_HrpK type III 88.4 2.6 5.5E-05 37.4 7.7 54 580-633 22-75 (153)
280 KOG2610 Uncharacterized conser 88.2 12 0.00027 37.7 13.0 173 446-624 115-308 (491)
281 PF13181 TPR_8: Tetratricopept 88.0 0.9 2E-05 28.8 3.7 31 570-600 3-33 (34)
282 COG3629 DnrI DNA-binding trans 87.7 3.5 7.7E-05 41.2 9.3 74 434-507 153-234 (280)
283 KOG4279 Serine/threonine prote 87.7 6.5 0.00014 43.8 11.8 182 368-601 205-399 (1226)
284 KOG2114 Vacuolar assembly/sort 87.6 59 0.0013 37.4 30.2 117 136-259 339-458 (933)
285 PF13428 TPR_14: Tetratricopep 87.6 1.6 3.4E-05 29.8 4.9 33 467-501 3-35 (44)
286 COG3947 Response regulator con 87.0 27 0.00058 34.8 14.3 61 570-630 277-341 (361)
287 PF00515 TPR_1: Tetratricopept 86.8 1.4 2.9E-05 28.0 4.0 32 466-499 2-33 (34)
288 PF13176 TPR_7: Tetratricopept 86.8 1.4 3.1E-05 28.5 4.1 26 467-492 1-26 (36)
289 COG3629 DnrI DNA-binding trans 85.8 5 0.00011 40.1 9.2 62 570-631 155-216 (280)
290 TIGR02561 HrpB1_HrpK type III 85.7 16 0.00035 32.5 11.1 86 510-599 20-108 (153)
291 KOG4648 Uncharacterized conser 85.4 3.1 6.7E-05 41.9 7.4 110 473-622 105-215 (536)
292 PF09205 DUF1955: Domain of un 84.8 26 0.00056 30.5 11.6 58 371-429 93-150 (161)
293 KOG4570 Uncharacterized conser 84.7 7 0.00015 39.1 9.3 98 428-529 58-164 (418)
294 cd00923 Cyt_c_Oxidase_Va Cytoc 84.6 8.6 0.00019 31.2 8.1 69 554-634 28-96 (103)
295 PF14853 Fis1_TPR_C: Fis1 C-te 84.6 2.4 5.1E-05 30.4 4.6 36 573-608 6-41 (53)
296 KOG4555 TPR repeat-containing 84.0 12 0.00026 32.3 9.2 53 475-529 53-106 (175)
297 PF07035 Mic1: Colon cancer-as 83.9 28 0.0006 32.0 12.3 133 82-225 15-148 (167)
298 PRK10941 hypothetical protein; 83.7 7.2 0.00016 39.1 9.3 62 570-631 183-244 (269)
299 PF10602 RPN7: 26S proteasome 83.0 24 0.00051 33.0 12.0 59 435-493 37-101 (177)
300 PF02284 COX5A: Cytochrome c o 82.7 10 0.00022 31.2 7.9 69 554-634 31-99 (108)
301 PF02259 FAT: FAT domain; Int 82.2 69 0.0015 33.6 18.3 64 567-630 145-212 (352)
302 PF10602 RPN7: 26S proteasome 82.2 15 0.00032 34.4 10.3 96 466-563 37-140 (177)
303 PF07719 TPR_2: Tetratricopept 82.0 2.7 5.9E-05 26.4 3.9 31 467-499 3-33 (34)
304 PF13170 DUF4003: Protein of u 81.7 31 0.00068 35.3 13.2 126 380-507 78-224 (297)
305 COG5107 RNA14 Pre-mRNA 3'-end 81.4 79 0.0017 33.7 33.9 144 433-581 396-548 (660)
306 KOG4570 Uncharacterized conser 81.1 5.3 0.00011 39.9 6.9 50 76-125 115-164 (418)
307 PF07721 TPR_4: Tetratricopept 79.8 2.6 5.7E-05 24.9 2.9 24 603-626 2-25 (26)
308 COG5107 RNA14 Pre-mRNA 3'-end 79.0 95 0.002 33.1 32.0 130 28-159 40-189 (660)
309 PF13431 TPR_17: Tetratricopep 79.0 3.4 7.4E-05 26.3 3.4 24 431-454 10-33 (34)
310 PF10345 Cohesin_load: Cohesin 78.8 1.3E+02 0.0028 34.6 35.1 194 27-223 27-251 (608)
311 TIGR02508 type_III_yscG type I 78.8 31 0.00067 28.3 9.3 61 442-505 47-107 (115)
312 PF00637 Clathrin: Region in C 78.6 1.9 4.2E-05 38.6 3.1 86 101-189 12-97 (143)
313 PF06552 TOM20_plant: Plant sp 78.4 11 0.00024 34.8 7.6 46 584-629 51-100 (186)
314 KOG4648 Uncharacterized conser 77.4 4.7 0.0001 40.7 5.4 83 544-626 105-189 (536)
315 PF00637 Clathrin: Region in C 77.3 2.6 5.7E-05 37.7 3.6 84 2-88 14-97 (143)
316 COG4649 Uncharacterized protei 76.4 45 0.00097 30.6 10.7 50 344-393 69-123 (221)
317 PF11207 DUF2989: Protein of u 76.2 14 0.00031 34.8 7.9 70 553-622 123-198 (203)
318 KOG1308 Hsp70-interacting prot 75.7 1.9 4E-05 43.6 2.2 87 549-635 127-215 (377)
319 PF13181 TPR_8: Tetratricopept 75.3 4.4 9.6E-05 25.4 3.3 27 467-493 3-29 (34)
320 KOG0276 Vesicle coat complex C 75.0 19 0.0004 39.5 9.4 124 346-495 599-722 (794)
321 KOG0276 Vesicle coat complex C 74.1 39 0.00085 37.2 11.5 147 446-626 598-745 (794)
322 PF09670 Cas_Cas02710: CRISPR- 74.0 1.3E+02 0.0028 32.1 18.6 121 476-597 142-270 (379)
323 PF13374 TPR_10: Tetratricopep 73.9 6.7 0.00015 25.9 4.1 28 466-493 3-30 (42)
324 PF13374 TPR_10: Tetratricopep 73.5 4.7 0.0001 26.7 3.2 28 603-630 3-30 (42)
325 PRK13800 putative oxidoreducta 73.4 2.2E+02 0.0048 34.6 23.3 18 535-552 788-805 (897)
326 cd00923 Cyt_c_Oxidase_Va Cytoc 72.9 25 0.00054 28.7 7.4 62 481-544 23-84 (103)
327 PF07035 Mic1: Colon cancer-as 72.7 79 0.0017 29.1 15.0 32 221-252 18-49 (167)
328 PHA02875 ankyrin repeat protei 72.6 1.5E+02 0.0031 32.1 17.1 19 138-156 72-90 (413)
329 KOG1550 Extracellular protein 72.5 1.5E+02 0.0031 33.7 16.6 52 582-635 378-430 (552)
330 KOG0890 Protein kinase of the 72.5 3.2E+02 0.0069 36.0 31.0 279 335-632 1422-1732(2382)
331 PRK11619 lytic murein transgly 71.5 2E+02 0.0043 33.2 31.3 254 338-609 104-383 (644)
332 PF02284 COX5A: Cytochrome c o 71.5 31 0.00067 28.5 7.7 61 483-545 28-88 (108)
333 KOG1586 Protein required for f 70.9 1.1E+02 0.0023 29.8 15.5 99 514-612 128-241 (288)
334 smart00028 TPR Tetratricopepti 70.7 8.5 0.00018 22.8 3.9 28 572-599 5-32 (34)
335 PF15161 Neuropep_like: Neurop 70.3 1.4 2.9E-05 30.9 -0.1 17 726-743 11-27 (65)
336 PF13174 TPR_6: Tetratricopept 70.1 5 0.00011 24.9 2.6 28 604-631 2-29 (33)
337 PF06552 TOM20_plant: Plant sp 69.2 18 0.0004 33.3 6.8 62 481-547 51-124 (186)
338 TIGR01503 MthylAspMut_E methyl 69.0 7.7 0.00017 41.2 4.9 127 413-543 68-218 (480)
339 TIGR02508 type_III_yscG type I 68.9 45 0.00098 27.4 8.0 63 338-403 44-106 (115)
340 COG4649 Uncharacterized protei 68.9 97 0.0021 28.6 15.7 119 475-596 68-195 (221)
341 KOG1464 COP9 signalosome, subu 68.7 1.3E+02 0.0027 29.8 13.6 247 328-580 21-316 (440)
342 PF08631 SPO22: Meiosis protei 68.1 1.4E+02 0.0031 30.2 23.7 23 468-491 250-272 (278)
343 KOG3364 Membrane protein invol 67.6 25 0.00054 30.7 6.8 28 576-603 79-106 (149)
344 KOG0376 Serine-threonine phosp 66.8 13 0.00028 39.7 6.1 83 546-628 14-98 (476)
345 PF07721 TPR_4: Tetratricopept 66.4 11 0.00024 22.1 3.4 22 437-458 4-25 (26)
346 PHA02875 ankyrin repeat protei 65.8 1.1E+02 0.0024 33.1 13.7 131 19-157 19-158 (413)
347 COG2976 Uncharacterized protei 65.4 1.2E+02 0.0027 28.5 13.9 112 483-602 70-193 (207)
348 PF15469 Sec5: Exocyst complex 65.3 1E+02 0.0022 28.9 11.5 115 471-607 63-178 (182)
349 COG1747 Uncharacterized N-term 65.0 2.2E+02 0.0047 31.2 17.2 192 407-601 39-238 (711)
350 KOG1941 Acetylcholine receptor 64.9 1.8E+02 0.0039 30.2 21.7 191 335-525 45-271 (518)
351 PF13762 MNE1: Mitochondrial s 64.2 50 0.0011 29.5 8.3 78 32-109 41-128 (145)
352 PF11207 DUF2989: Protein of u 63.5 47 0.001 31.4 8.5 73 381-454 123-198 (203)
353 PF13174 TPR_6: Tetratricopept 63.3 13 0.00028 22.8 3.6 28 574-601 6-33 (33)
354 KOG1585 Protein required for f 62.9 1.6E+02 0.0034 28.9 18.7 66 539-614 193-264 (308)
355 PF11768 DUF3312: Protein of u 62.2 87 0.0019 34.5 11.3 57 438-494 412-473 (545)
356 KOG0686 COP9 signalosome, subu 62.1 2.2E+02 0.0047 30.2 15.5 59 435-493 151-215 (466)
357 PRK15180 Vi polysaccharide bio 62.0 32 0.00069 36.6 7.7 121 478-602 302-425 (831)
358 PF13934 ELYS: Nuclear pore co 61.3 63 0.0014 31.6 9.5 21 471-491 114-134 (226)
359 COG4455 ImpE Protein of avirul 60.8 28 0.00062 33.1 6.4 65 540-604 5-71 (273)
360 PRK13800 putative oxidoreducta 60.5 3.8E+02 0.0083 32.5 25.8 254 253-528 625-880 (897)
361 PF14561 TPR_20: Tetratricopep 60.2 20 0.00044 29.0 4.9 43 589-631 9-51 (90)
362 COG2909 MalT ATP-dependent tra 59.4 3.5E+02 0.0077 31.8 20.0 184 445-633 426-649 (894)
363 PF13934 ELYS: Nuclear pore co 59.3 86 0.0019 30.6 10.0 118 468-597 79-198 (226)
364 PF10579 Rapsyn_N: Rapsyn N-te 59.2 17 0.00037 28.4 3.9 47 512-558 18-65 (80)
365 KOG2066 Vacuolar assembly/sort 58.9 3.4E+02 0.0073 31.4 21.5 75 132-209 393-467 (846)
366 PRK13342 recombination factor 58.8 2.7E+02 0.0058 30.2 15.5 116 179-312 154-279 (413)
367 KOG0545 Aryl-hydrocarbon recep 58.1 1.5E+02 0.0032 29.1 10.7 53 579-631 241-293 (329)
368 smart00028 TPR Tetratricopepti 55.9 22 0.00047 20.8 3.7 27 467-493 3-29 (34)
369 KOG1550 Extracellular protein 55.5 3.5E+02 0.0077 30.6 19.2 86 343-429 259-358 (552)
370 PF09477 Type_III_YscG: Bacter 54.9 1.3E+02 0.0028 25.3 9.5 87 414-504 21-107 (116)
371 PF14427 Pput2613-deam: Pput_2 54.9 23 0.0005 29.3 4.2 59 697-755 44-102 (118)
372 PF10345 Cohesin_load: Cohesin 53.9 4E+02 0.0086 30.7 34.5 23 607-629 582-604 (608)
373 PF10366 Vps39_1: Vacuolar sor 52.2 67 0.0015 27.1 6.9 28 365-392 40-67 (108)
374 PF07720 TPR_3: Tetratricopept 52.1 35 0.00077 22.1 4.0 32 570-601 3-36 (36)
375 PF10366 Vps39_1: Vacuolar sor 52.1 69 0.0015 27.0 7.0 27 467-493 41-67 (108)
376 PRK14015 pepN aminopeptidase N 51.8 3.3E+02 0.0071 32.8 14.9 149 470-623 687-845 (875)
377 KOG4507 Uncharacterized conser 51.7 43 0.00094 36.7 6.8 43 569-611 677-719 (886)
378 PF04190 DUF410: Protein of un 51.7 2.6E+02 0.0057 28.0 15.4 83 432-529 88-170 (260)
379 KOG4642 Chaperone-dependent E3 51.6 1.9E+02 0.0041 28.3 10.3 76 449-526 25-104 (284)
380 KOG4077 Cytochrome c oxidase, 51.3 1.2E+02 0.0027 26.2 8.0 68 554-633 70-137 (149)
381 PF14561 TPR_20: Tetratricopep 51.2 1.3E+02 0.0028 24.3 8.6 63 567-629 21-86 (90)
382 PF11838 ERAP1_C: ERAP1-like C 50.3 3E+02 0.0066 28.3 16.4 86 415-500 146-237 (324)
383 PRK11619 lytic murein transgly 49.9 4.6E+02 0.01 30.3 39.0 189 433-633 311-507 (644)
384 TIGR02414 pepN_proteo aminopep 49.7 4.3E+02 0.0094 31.8 15.4 151 469-623 676-835 (863)
385 PF04910 Tcf25: Transcriptiona 49.4 3.5E+02 0.0075 28.7 17.4 89 507-599 110-224 (360)
386 COG4976 Predicted methyltransf 49.0 26 0.00056 33.6 4.3 57 545-601 4-62 (287)
387 PF09986 DUF2225: Uncharacteri 49.0 83 0.0018 30.4 8.0 63 569-631 119-194 (214)
388 KOG0292 Vesicle coat complex C 49.0 18 0.00039 41.5 3.7 95 507-625 627-721 (1202)
389 KOG1258 mRNA processing protei 48.5 4.3E+02 0.0094 29.5 30.1 405 60-511 44-486 (577)
390 KOG0551 Hsp90 co-chaperone CNS 48.4 60 0.0013 33.1 6.8 89 538-626 83-177 (390)
391 PRK15180 Vi polysaccharide bio 48.3 2E+02 0.0043 31.0 10.7 138 513-655 302-442 (831)
392 PF11846 DUF3366: Domain of un 48.1 33 0.00072 32.5 5.1 35 565-599 141-175 (193)
393 KOG0403 Neoplastic transformat 48.0 3.8E+02 0.0083 28.8 14.6 335 34-395 218-574 (645)
394 KOG4642 Chaperone-dependent E3 48.0 49 0.0011 32.1 5.9 67 564-630 39-106 (284)
395 PF13762 MNE1: Mitochondrial s 47.7 2.1E+02 0.0045 25.6 10.8 50 464-513 78-128 (145)
396 PRK13342 recombination factor 47.5 4E+02 0.0086 28.8 15.3 47 365-411 228-277 (413)
397 smart00386 HAT HAT (Half-A-TPR 46.9 37 0.00081 20.5 3.7 28 582-609 1-28 (33)
398 PF14853 Fis1_TPR_C: Fis1 C-te 46.0 64 0.0014 23.1 4.9 35 471-507 7-41 (53)
399 KOG3364 Membrane protein invol 45.6 2.2E+02 0.0047 25.2 10.7 70 497-568 29-104 (149)
400 KOG2396 HAT (Half-A-TPR) repea 44.0 4.7E+02 0.01 28.7 32.5 18 516-533 512-529 (568)
401 cd08819 CARD_MDA5_2 Caspase ac 43.9 1.4E+02 0.003 24.0 6.9 39 446-485 48-86 (88)
402 KOG3824 Huntingtin interacting 43.6 32 0.00069 34.5 4.1 60 547-606 127-188 (472)
403 COG4785 NlpI Lipoprotein NlpI, 43.2 3.1E+02 0.0068 26.4 14.5 60 333-392 99-161 (297)
404 PF06957 COPI_C: Coatomer (COP 42.6 60 0.0013 34.8 6.3 44 558-601 288-333 (422)
405 KOG3824 Huntingtin interacting 42.2 74 0.0016 32.0 6.3 99 578-688 126-225 (472)
406 PF09477 Type_III_YscG: Bacter 42.0 2.1E+02 0.0046 24.1 9.0 86 313-402 21-106 (116)
407 PRK09169 hypothetical protein; 42.0 1E+03 0.022 31.9 40.4 463 165-628 125-689 (2316)
408 KOG3507 DNA-directed RNA polym 41.4 10 0.00022 27.2 0.3 12 728-739 20-31 (62)
409 TIGR03504 FimV_Cterm FimV C-te 41.3 52 0.0011 22.5 3.7 24 269-292 5-28 (44)
410 COG4896 Uncharacterized protei 41.1 14 0.0003 26.7 0.9 22 719-744 26-49 (68)
411 PF11846 DUF3366: Domain of un 40.6 81 0.0018 29.8 6.5 31 497-527 141-171 (193)
412 COG4455 ImpE Protein of avirul 40.4 3.5E+02 0.0076 26.2 12.5 123 468-602 4-139 (273)
413 cd08819 CARD_MDA5_2 Caspase ac 40.2 1.5E+02 0.0032 23.9 6.5 64 15-80 22-85 (88)
414 KOG3807 Predicted membrane pro 40.1 2.8E+02 0.006 28.4 9.9 165 411-606 228-400 (556)
415 PF14689 SPOB_a: Sensor_kinase 39.8 60 0.0013 24.1 4.2 30 499-528 22-51 (62)
416 TIGR03504 FimV_Cterm FimV C-te 39.7 65 0.0014 22.0 4.0 25 471-495 5-29 (44)
417 PF14863 Alkyl_sulf_dimr: Alky 39.5 1.2E+02 0.0027 27.0 6.9 67 553-622 58-124 (141)
418 PF13929 mRNA_stabil: mRNA sta 39.4 4.2E+02 0.0091 26.8 14.1 58 329-386 198-260 (292)
419 PF12968 DUF3856: Domain of Un 39.1 2.5E+02 0.0055 24.1 10.7 65 539-628 58-126 (144)
420 cd02965 HyaE HyaE family; HyaE 39.0 65 0.0014 27.3 4.8 72 640-729 22-94 (111)
421 PRK10941 hypothetical protein; 39.0 1.6E+02 0.0035 29.6 8.4 65 542-606 187-253 (269)
422 KOG2034 Vacuolar sorting prote 38.5 7.3E+02 0.016 29.3 19.4 50 336-390 507-556 (911)
423 KOG4234 TPR repeat-containing 38.4 2.2E+02 0.0047 27.0 8.3 95 472-601 102-201 (271)
424 PF05119 Terminase_4: Phage te 37.5 92 0.002 25.6 5.6 37 655-691 57-93 (100)
425 PF11663 Toxin_YhaV: Toxin wit 37.5 37 0.00081 29.6 3.1 34 475-510 105-138 (140)
426 PF12862 Apc5: Anaphase-promot 37.1 88 0.0019 25.5 5.3 52 579-630 9-69 (94)
427 TIGR02710 CRISPR-associated pr 36.7 5.5E+02 0.012 27.3 12.5 31 474-504 139-169 (380)
428 PF11848 DUF3368: Domain of un 36.1 87 0.0019 21.8 4.3 34 71-104 12-45 (48)
429 PRK11509 hydrogenase-1 operon 35.4 63 0.0014 28.4 4.3 67 646-729 35-102 (132)
430 PF10579 Rapsyn_N: Rapsyn N-te 35.3 1.2E+02 0.0027 23.8 5.3 47 477-523 18-66 (80)
431 PHA02537 M terminase endonucle 35.1 2.9E+02 0.0063 27.0 9.1 52 437-500 67-119 (230)
432 PF08225 Antimicrobial19: Pseu 34.9 15 0.00033 20.1 0.3 10 733-742 11-20 (23)
433 PF02847 MA3: MA3 domain; Int 34.8 1.8E+02 0.0038 24.5 7.1 22 369-390 7-28 (113)
434 KOG1586 Protein required for f 34.7 4.5E+02 0.0098 25.8 13.7 17 343-359 24-40 (288)
435 KOG1498 26S proteasome regulat 34.4 5.9E+02 0.013 27.0 14.7 120 540-659 135-269 (439)
436 KOG1464 COP9 signalosome, subu 34.0 2.8E+02 0.0061 27.5 8.7 89 542-630 71-173 (440)
437 PF11525 CopK: Copper resistan 33.2 16 0.00035 27.3 0.3 20 747-766 8-27 (73)
438 PF00244 14-3-3: 14-3-3 protei 33.1 4.8E+02 0.01 25.6 11.9 184 471-669 7-222 (236)
439 KOG2063 Vacuolar assembly/sort 33.0 9.3E+02 0.02 28.9 20.1 213 366-614 506-744 (877)
440 PF10925 DUF2680: Protein of u 32.9 58 0.0013 24.0 3.1 29 654-682 31-59 (59)
441 PF14689 SPOB_a: Sensor_kinase 32.8 54 0.0012 24.4 3.0 26 468-493 26-51 (62)
442 PF11663 Toxin_YhaV: Toxin wit 32.7 53 0.0012 28.7 3.3 32 174-207 107-138 (140)
443 PF07163 Pex26: Pex26 protein; 32.7 2.5E+02 0.0055 28.2 8.2 86 67-154 89-181 (309)
444 TIGR00686 phnA alkylphosphonat 32.3 22 0.00047 29.4 0.9 32 725-756 16-48 (109)
445 PF11848 DUF3368: Domain of un 32.2 1.4E+02 0.0031 20.8 4.9 33 173-205 13-45 (48)
446 PF07575 Nucleopor_Nup85: Nup8 32.1 8E+02 0.017 27.9 19.0 126 412-552 310-454 (566)
447 PF07163 Pex26: Pex26 protein; 31.9 4.3E+02 0.0093 26.6 9.6 19 371-389 90-108 (309)
448 PF08967 DUF1884: Domain of un 31.7 52 0.0011 25.7 2.8 27 661-687 7-33 (85)
449 KOG4077 Cytochrome c oxidase, 31.3 2.7E+02 0.0059 24.2 7.1 60 483-544 67-126 (149)
450 PF04190 DUF410: Protein of un 30.9 5.5E+02 0.012 25.6 16.5 89 273-361 20-118 (260)
451 cd08326 CARD_CASP9 Caspase act 30.9 1.5E+02 0.0033 23.6 5.5 61 15-79 19-79 (84)
452 PRK10564 maltose regulon perip 30.1 94 0.002 31.5 5.0 41 467-507 259-299 (303)
453 PF01147 Crust_neurohorm: Crus 30.0 8.8 0.00019 29.5 -1.6 14 726-739 18-31 (73)
454 PF04123 DUF373: Domain of unk 29.6 3.3E+02 0.0073 28.4 9.1 82 585-694 28-111 (344)
455 PF07575 Nucleopor_Nup85: Nup8 29.6 3.2E+02 0.0069 31.1 10.1 30 276-305 508-537 (566)
456 PF14376 Haem_bd: Haem-binding 29.6 20 0.00043 31.8 0.3 10 728-737 41-50 (137)
457 KOG2471 TPR repeat-containing 29.5 5E+02 0.011 28.3 10.3 141 406-549 213-382 (696)
458 PF11838 ERAP1_C: ERAP1-like C 29.4 6.3E+02 0.014 25.9 18.0 89 509-597 139-230 (324)
459 PF13971 Mei4: Meiosis-specifi 29.4 16 0.00035 38.0 -0.3 30 696-725 12-42 (375)
460 COG3947 Response regulator con 29.3 1.1E+02 0.0023 30.8 5.1 57 134-190 282-341 (361)
461 COG5159 RPN6 26S proteasome re 29.1 5.2E+02 0.011 26.1 9.6 125 370-494 9-154 (421)
462 COG5431 Uncharacterized metal- 28.9 17 0.00036 29.7 -0.3 11 760-770 47-57 (117)
463 PF13929 mRNA_stabil: mRNA sta 28.8 6.3E+02 0.014 25.6 14.1 53 431-483 199-256 (292)
464 PF04090 RNA_pol_I_TF: RNA pol 28.7 2.9E+02 0.0063 26.3 7.8 89 570-659 43-133 (199)
465 KOG0292 Vesicle coat complex C 28.6 6.5E+02 0.014 29.8 11.5 130 442-596 651-781 (1202)
466 PF02184 HAT: HAT (Half-A-TPR) 28.6 1.2E+02 0.0026 19.1 3.5 26 583-609 2-27 (32)
467 PF15015 NYD-SP12_N: Spermatog 28.1 1.2E+02 0.0025 32.2 5.4 84 624-720 309-395 (569)
468 PF04910 Tcf25: Transcriptiona 28.0 7.4E+02 0.016 26.2 17.1 52 408-459 112-164 (360)
469 PF08311 Mad3_BUB1_I: Mad3/BUB 27.7 4.1E+02 0.0088 23.1 9.0 80 478-561 39-124 (126)
470 cd08326 CARD_CASP9 Caspase act 26.8 2.2E+02 0.0048 22.7 5.8 61 420-484 20-80 (84)
471 COG2178 Predicted RNA-binding 26.7 5.5E+02 0.012 24.3 10.0 50 445-494 40-98 (204)
472 PRK14700 recombination factor 26.7 5.4E+02 0.012 26.3 9.7 69 262-330 122-198 (300)
473 PF07255 Benyvirus_14KDa: Beny 26.2 25 0.00054 28.2 0.3 28 701-738 82-112 (123)
474 PRK05629 hypothetical protein; 26.2 6.3E+02 0.014 26.1 10.9 25 476-500 204-228 (318)
475 KOG1515 Arylacetamide deacetyl 25.7 1.6E+02 0.0034 30.8 6.0 45 619-667 283-327 (336)
476 COG4890 Predicted outer membra 25.1 24 0.00051 22.1 -0.0 10 706-715 11-20 (37)
477 PRK10564 maltose regulon perip 25.1 93 0.002 31.5 4.0 39 63-101 259-297 (303)
478 COG4472 Uncharacterized protei 24.8 1.4E+02 0.0031 23.1 4.0 35 647-684 6-40 (88)
479 PRK11639 zinc uptake transcrip 24.8 2.3E+02 0.005 26.2 6.4 33 481-513 41-73 (169)
480 smart00777 Mad3_BUB1_I Mad3/BU 24.8 2.2E+02 0.0048 24.7 5.8 68 553-626 50-123 (125)
481 COG3019 Predicted metal-bindin 24.3 58 0.0012 28.5 2.1 47 706-754 8-58 (149)
482 COG1488 PncB Nicotinic acid ph 24.0 69 0.0015 34.4 3.2 85 667-754 277-365 (405)
483 KOG2659 LisH motif-containing 23.9 6.8E+02 0.015 24.4 9.8 94 466-562 27-129 (228)
484 PF00322 Endothelin: Endotheli 23.6 35 0.00075 21.0 0.5 8 763-770 4-11 (31)
485 cd00280 TRFH Telomeric Repeat 23.3 3.3E+02 0.0072 25.5 6.8 14 516-529 85-98 (200)
486 PF04034 DUF367: Domain of unk 23.1 5.1E+02 0.011 22.6 7.6 58 536-593 66-124 (127)
487 COG2912 Uncharacterized conser 23.0 1.8E+02 0.0039 29.0 5.5 55 574-628 187-241 (269)
488 PF12796 Ank_2: Ankyrin repeat 22.9 2.4E+02 0.0053 22.1 5.7 35 22-58 17-51 (89)
489 KOG0991 Replication factor C, 22.8 7.3E+02 0.016 24.3 10.1 48 453-501 227-274 (333)
490 smart00544 MA3 Domain in DAP-5 22.7 4.6E+02 0.0099 21.9 8.7 23 369-391 7-29 (113)
491 COG1725 Predicted transcriptio 22.6 3.3E+02 0.0072 23.7 6.4 56 618-681 49-108 (125)
492 PF04090 RNA_pol_I_TF: RNA pol 22.5 6.8E+02 0.015 23.8 10.2 131 465-612 41-188 (199)
493 COG5108 RPO41 Mitochondrial DN 22.0 6.2E+02 0.013 28.8 9.6 24 303-326 33-56 (1117)
494 PRK12485 bifunctional 3,4-dihy 21.9 37 0.0008 35.7 0.7 21 731-752 268-294 (369)
495 PF10865 DUF2703: Domain of un 21.9 1.1E+02 0.0023 26.4 3.3 46 662-722 23-72 (120)
496 KOG2659 LisH motif-containing 21.8 7.5E+02 0.016 24.1 12.4 95 431-525 23-128 (228)
497 PF14044 NETI: NETI protein 21.6 80 0.0017 22.8 2.0 19 668-686 10-28 (57)
498 COG3058 FdhE Uncharacterized p 21.5 35 0.00076 33.6 0.3 16 729-744 253-268 (308)
499 PRK07914 hypothetical protein; 21.4 8.2E+02 0.018 25.2 10.6 26 476-501 206-231 (320)
500 COG4976 Predicted methyltransf 21.3 1.7E+02 0.0037 28.4 4.7 54 579-632 6-59 (287)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.3e-165 Score=1450.02 Aligned_cols=765 Identities=35% Similarity=0.675 Sum_probs=757.0
Q ss_pred CchhhcCCCchhHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHH
Q 046775 2 LKACTSKKDLFLGLQVHGIVVFTGFDSDEFVANSLVVMYAKCGNFIDSRRLFDAIPERSVVSWNSLFSCYVHCDFLEEAV 81 (771)
Q Consensus 2 l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~A~ 81 (771)
+++|...+.+..|.++|+.+++.|+.++..++|+|+++|+++|+++.|+++|++|++||+++||+||.+|++.|++++|+
T Consensus 93 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~ 172 (857)
T PLN03077 93 FRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEAL 172 (857)
T ss_pred HHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHH
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHCCCCCCcchHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHccCCCCC
Q 046775 82 CFFKEMVLSGIRPNEFSLSSMINACAGSGDSLLGRKIHGYSIKLGYDSDMFSANALVDMYAKVGNLEDAVAVFKDIEHPD 161 (771)
Q Consensus 82 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~ 161 (771)
++|++|...|+.||.+||+++|++|+..+++..++++|..+++.|+.||+.++|+||++|+++|++++|.++|++|++||
T Consensus 173 ~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d 252 (857)
T PLN03077 173 CLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRD 252 (857)
T ss_pred HHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhcCCcHHHHHHHHHHHHHccCCCChhHHHHHHHh
Q 046775 162 IVSWNAVIAGCVLHEHNDWALKLFQQMKSSEINPNMFTYTSALKACAGMELKELGRQLHCSLIKMEIKSDPIVGVGLVDM 241 (771)
Q Consensus 162 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~ 241 (771)
+++||+||.+|++.|++++|+++|++|...|+.||..||+.++.+|+..|+++.|+++|..+.+.|+.||..+||+|+++
T Consensus 253 ~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~ 332 (857)
T PLN03077 253 CISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQM 332 (857)
T ss_pred cchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCChHHHHHHhhhCCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCChhHHHHHH
Q 046775 242 YAKCGSMDEARMIFHLMPEKNLIAWNIVISGHLQNGGDMEAASLFPWMYREGVGFDQTTLSTVLKSVASFQAIGVCKQVH 321 (771)
Q Consensus 242 y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~ 321 (771)
|+++|++++|.++|++|+.||+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|
T Consensus 333 y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~ 412 (857)
T PLN03077 333 YLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLH 412 (857)
T ss_pred HHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCchHHHhHHHHHHHhcCCHHHHHHHHHhcCCCceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhh
Q 046775 322 ALSVKTAFESDDYIVNSLIDAYGKCGHVEDAVKIFKESSAVDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFV 401 (771)
Q Consensus 322 ~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 401 (771)
+.+.+.|+.++..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.. +++||.+|
T Consensus 413 ~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t 491 (857)
T PLN03077 413 ELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVT 491 (857)
T ss_pred HHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986 69999999
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCCh
Q 046775 402 CSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPDRGIVSWSAMIGGLAQHGRG 481 (771)
Q Consensus 402 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~ 481 (771)
|+++|.+|++.|+++.++++|..+.+.|+.+|..++|+||++|+|||++++|.++|+.+ .+|+++||+||.+|+++|+.
T Consensus 492 ~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~ 570 (857)
T PLN03077 492 LIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKG 570 (857)
T ss_pred HHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCH
Confidence 99999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHh
Q 046775 482 KEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDT 561 (771)
Q Consensus 482 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~ 561 (771)
++|+++|++|.+.|+.||.+||+.+|.+|++.|++++|.++|++|.+++|+.|+.+||+|||++|+|+|+++||++++++
T Consensus 571 ~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 571 SMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred CCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCCccce
Q 046775 562 MPFQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDNKLKKEPGMSW 641 (771)
Q Consensus 562 m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~ 641 (771)
||++||..+|++|+++|+.|||++.|+.+++++++++|++++.|++|+|+|+..|+|++|.++|+.|+++|++|.|||||
T Consensus 651 m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ 730 (857)
T PLN03077 651 MPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSW 730 (857)
T ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCEEEEEEeCCCCccchHHHHHHHHHHHHHHHhcCcccCCccccCCcchhhhhhhhccccHHHHHHcccccCCCCCe
Q 046775 642 IEVKDKVYTFTVGDRSHARSKEIYAKLDEVSDLLNKAGYVPMVETDLHDVEESEKEQLLYHHSEKLAVAFGLIATPPGAT 721 (771)
Q Consensus 642 i~~~~~~~~f~~~~~~h~~~~~i~~~l~~l~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~~~~ 721 (771)
||++|+||.|++||++||+.++||.+|++|..+|++.||+||++.++ |++||+||+.|++||||||||||||+||||+|
T Consensus 731 ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~ 809 (857)
T PLN03077 731 VEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMP 809 (857)
T ss_pred EEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCe
Confidence 99999999999999999999999999999999999999999999998 55889999999999999999999999999999
Q ss_pred EEEeeccccccCccchhhhhhhhhcceEEEecCCccccccCCccCCCC
Q 046775 722 IRVKKNLRICVDCHTSFEFISKIVSREIIVRDVNRFHHFRNGSCSCGG 769 (771)
Q Consensus 722 ~~~~kn~r~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 769 (771)
|||+||||||+|||+++||||||+||||||||++|||||+||+|||||
T Consensus 810 i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 810 IWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred EEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999999999999999999999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=9.1e-140 Score=1208.59 Aligned_cols=613 Identities=38% Similarity=0.653 Sum_probs=607.3
Q ss_pred CCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCC-CCCChhhHHHHHHHhhcCCcHHHHHHHHHHHHHccCCCChhHHHH
Q 046775 159 HPDIVSWNAVIAGCVLHEHNDWALKLFQQMKSSE-INPNMFTYTSALKACAGMELKELGRQLHCSLIKMEIKSDPIVGVG 237 (771)
Q Consensus 159 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~ 237 (771)
.++.++|+.+|.+|.+.|++++|+++|+.|...+ ..||..||+.++.+|++.++++.|.++|..+.+.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3677899999999999999999999999998865 789999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCChHHHHHHhhhCCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCChhHH
Q 046775 238 LVDMYAKCGSMDEARMIFHLMPEKNLIAWNIVISGHLQNGGDMEAASLFPWMYREGVGFDQTTLSTVLKSVASFQAIGVC 317 (771)
Q Consensus 238 Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 317 (771)
|+++|+++|+++.|.++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..+..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCchHHHhHHHHHHHhcCCHHHHHHHHHhcCCCceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC
Q 046775 318 KQVHALSVKTAFESDDYIVNSLIDAYGKCGHVEDAVKIFKESSAVDLVACTSMITAYAQFGLGEEALKLYLEMQDREINP 397 (771)
Q Consensus 318 ~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 397 (771)
+++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|+++|+++||+||.+|++.|+.++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHH
Q 046775 398 DSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPDRGIVSWSAMIGGLAQ 477 (771)
Q Consensus 398 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~ 477 (771)
|..||++++.+|++.|.++.|+++|..+.+.|+++|..++|+||++|+|+|++++|.++|++|.++|+++||+||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHH
Q 046775 478 HGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAME 557 (771)
Q Consensus 478 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~ 557 (771)
+|+.++|+++|++|.+.|+.||.+||++++.+|++.|++++|.++|+.|.+++|+.|+..||+|||++|+|+|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCC
Q 046775 558 LVDTMPFQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDNKLKKEP 637 (771)
Q Consensus 558 ~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~ 637 (771)
++++||++|+..+|++|+++|+.+|+++.|+.+++++++++|++..+|+.|+|+|++.|+|++|.++++.|+++|++|.|
T Consensus 484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~ 563 (697)
T PLN03081 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563 (697)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEEcCEEEEEEeCCCCccchHHHHHHHHHHHHHHHhcCcccCCccccCCcchhhhhhhhccccHHHHHHcccccCC
Q 046775 638 GMSWIEVKDKVYTFTVGDRSHARSKEIYAKLDEVSDLLNKAGYVPMVETDLHDVEESEKEQLLYHHSEKLAVAFGLIATP 717 (771)
Q Consensus 638 g~s~i~~~~~~~~f~~~~~~h~~~~~i~~~l~~l~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~ 717 (771)
|+||||+++++|.|++||++||+.++||++|++|..+|++.||+||+.+++||++||+||+.|++||||||||||||+||
T Consensus 564 g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~ 643 (697)
T PLN03081 564 ACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTS 643 (697)
T ss_pred CeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEeeccccccCccchhhhhhhhhcceEEEecCCccccccCCccCCCCCC
Q 046775 718 PGATIRVKKNLRICVDCHTSFEFISKIVSREIIVRDVNRFHHFRNGSCSCGGYW 771 (771)
Q Consensus 718 ~~~~~~~~kn~r~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 771 (771)
||+||||+||||||+|||+++||||||+||||||||++|||||+||+|||||||
T Consensus 644 ~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 644 EWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 999999999999999999999999999999999999999999999999999999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.7e-85 Score=771.17 Aligned_cols=574 Identities=27% Similarity=0.437 Sum_probs=559.1
Q ss_pred CCCCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCCChhhHHH
Q 046775 57 PERSVVSWNSLFSCYVHCDFLEEAVCFFKEMVLSGIRPNEFSLSSMINACAGSGDSLLGRKIHGYSIKLGYDSDMFSANA 136 (771)
Q Consensus 57 ~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~ 136 (771)
+.++..++|.+|.+|++.|++++|+.+|++|.+.|+.|+..+|..++++|.+.+.++.|.++|..+++.|..++..++|+
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 34677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhcCCcHHHH
Q 046775 137 LVDMYAKVGNLEDAVAVFKDIEHPDIVSWNAVIAGCVLHEHNDWALKLFQQMKSSEINPNMFTYTSALKACAGMELKELG 216 (771)
Q Consensus 137 Li~~y~~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 216 (771)
||++|+++|+++.|.++|++|++||+++||+||.+|++.|++++|+++|++|...|+.||.+||+.++++|+..+++..+
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~ 206 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG 206 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCChhHHHHHHHhhhcCCChHHHHHHhhhCCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 046775 217 RQLHCSLIKMEIKSDPIVGVGLVDMYAKCGSMDEARMIFHLMPEKNLIAWNIVISGHLQNGGDMEAASLFPWMYREGVGF 296 (771)
Q Consensus 217 ~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 296 (771)
+++|..+++.|+.||..++|+|+++|+++|+++.|.++|++|+.||+++||+||.+|++.|++++|+++|++|...|+.|
T Consensus 207 ~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~P 286 (857)
T PLN03077 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDP 286 (857)
T ss_pred HHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHhhHHHHHHHHhccCChhHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcCCHHHHHHHHHhcCCCceecHHHHHHHHHH
Q 046775 297 DQTTLSTVLKSVASFQAIGVCKQVHALSVKTAFESDDYIVNSLIDAYGKCGHVEDAVKIFKESSAVDLVACTSMITAYAQ 376 (771)
Q Consensus 297 d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~ 376 (771)
|..||+.++.+|+..|+++.|+++|..+.+.|+.||..+||+|+++|+++|++++|.++|++|..+|+++||+||.+|++
T Consensus 287 d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~ 366 (857)
T PLN03077 287 DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEK 366 (857)
T ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 046775 377 FGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRA 456 (771)
Q Consensus 377 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 456 (771)
.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.++..++|+||++|+|+|++++|.++
T Consensus 367 ~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~v 446 (857)
T PLN03077 367 NGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV 446 (857)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCc
Q 046775 457 FSEIPDRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQ 536 (771)
Q Consensus 457 f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~ 536 (771)
|++|.++|+++||+||.+|+++|+.++|+++|++|.. +++||.+||+.+|.+|++.|.+++|.+++..|.+. |+.|+.
T Consensus 447 f~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~ 524 (857)
T PLN03077 447 FHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDG 524 (857)
T ss_pred HHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccc
Confidence 9999999999999999999999999999999999986 59999999999999999999999999999999876 999999
Q ss_pred chHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCchhHHHHHHHHHh
Q 046775 537 EHYACMIDILGRAGKFQEAMELVDTMPFQANASVWGALLGAARIYKNVEVGQHAAEMLFA--IEPEKSSTHVLLSNIYAS 614 (771)
Q Consensus 537 ~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~--l~p~~~~~~~~l~~~y~~ 614 (771)
..+++|+++|+++|++++|.++|+++ +||..+|++++.+|..+|+.+.|..+++++.+ +.| |..+|..+...|++
T Consensus 525 ~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~ 601 (857)
T PLN03077 525 FLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-DEVTFISLLCACSR 601 (857)
T ss_pred eechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHhh
Confidence 99999999999999999999999998 89999999999999999999999999999887 456 77889888899999
Q ss_pred cCCchhHHHHHHHHH-hCCCcc
Q 046775 615 AGMWDNVAKVRRFMK-DNKLKK 635 (771)
Q Consensus 615 ~g~~~~a~~~~~~m~-~~g~~k 635 (771)
.|++++|.++++.|+ +.|+.+
T Consensus 602 ~g~v~ea~~~f~~M~~~~gi~P 623 (857)
T PLN03077 602 SGMVTQGLEYFHSMEEKYSITP 623 (857)
T ss_pred cChHHHHHHHHHHHHHHhCCCC
Confidence 999999999999998 667754
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.7e-72 Score=645.04 Aligned_cols=473 Identities=25% Similarity=0.414 Sum_probs=456.1
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHhHHCC-CCCCcchHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCCChhhHHHH
Q 046775 59 RSVVSWNSLFSCYVHCDFLEEAVCFFKEMVLSG-IRPNEFSLSSMINACAGSGDSLLGRKIHGYSIKLGYDSDMFSANAL 137 (771)
Q Consensus 59 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~L 137 (771)
++.++|+++|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.|.++|..|.+.|+.||..++|.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 467799999999999999999999999999764 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhcCCcHHHHH
Q 046775 138 VDMYAKVGNLEDAVAVFKDIEHPDIVSWNAVIAGCVLHEHNDWALKLFQQMKSSEINPNMFTYTSALKACAGMELKELGR 217 (771)
Q Consensus 138 i~~y~~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 217 (771)
+++|+++|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..+..+.++
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCChhHHHHHHHhhhcCCChHHHHHHhhhCCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 046775 218 QLHCSLIKMEIKSDPIVGVGLVDMYAKCGSMDEARMIFHLMPEKNLIAWNIVISGHLQNGGDMEAASLFPWMYREGVGFD 297 (771)
Q Consensus 218 ~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 297 (771)
++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|+.+|+++||+||.+|++.|+.++|+++|++|.+.|+.||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHhccCChhHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcCCHHHHHHHHHhcCCCceecHHHHHHHHHHc
Q 046775 298 QTTLSTVLKSVASFQAIGVCKQVHALSVKTAFESDDYIVNSLIDAYGKCGHVEDAVKIFKESSAVDLVACTSMITAYAQF 377 (771)
Q Consensus 298 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 377 (771)
..||++++.+|++.|.++.|+++|+.+.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++.
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~ 404 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNH 404 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHH-hCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 046775 378 GLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIK-FGFMSDTFAGNSLVNMYAKCGSIDDADRA 456 (771)
Q Consensus 378 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 456 (771)
|+.++|+++|++|.+.|+.||.+||++++.+|++.|.+++|.++++.|.+ .|+.|+..+|++++++|++.|++++|.++
T Consensus 405 G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~ 484 (697)
T PLN03081 405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM 484 (697)
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999976 69999999999999999999999999999
Q ss_pred HhhCC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC
Q 046775 457 FSEIP-DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPN-HITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQP 534 (771)
Q Consensus 457 f~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p 534 (771)
|++|+ .|+..+|++|+.+|..+|+.+.|..+++++.+ +.|+ ..+|+.++..|++.|++++|.++++.|.+. |+.+
T Consensus 485 ~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k 561 (697)
T PLN03081 485 IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSM 561 (697)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCcc
Confidence 99997 78899999999999999999999999999875 5665 458888888999999999999999988866 7653
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.3e-70 Score=633.07 Aligned_cols=524 Identities=17% Similarity=0.238 Sum_probs=480.4
Q ss_pred CCChhhHHHHHHHHHcCCChHHHHHHHhcCCCCCcch-----HHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHH
Q 046775 27 DSDEFVANSLVVMYAKCGNFIDSRRLFDAIPERSVVS-----WNSLFSCYVHCDFLEEAVCFFKEMVLSGIRPNEFSLSS 101 (771)
Q Consensus 27 ~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~-----~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 101 (771)
.++...|..++..++++|++++|+++|++|+.++.+. ++.++.+|.+.|..++|+.+|+.|.. ||..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 4567789999999999999999999999999876654 45667789999999999999999974 99999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHccCC----CCCcccHHHHHHHHHhCCC
Q 046775 102 MINACAGSGDSLLGRKIHGYSIKLGYDSDMFSANALVDMYAKVGNLEDAVAVFKDIE----HPDIVSWNAVIAGCVLHEH 177 (771)
Q Consensus 102 ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~----~~~~~~~n~li~~~~~~g~ 177 (771)
+|.+|++.|+++.|.++|+.|.+.|+.||..+||.||++|+++|++++|.++|++|. .||+++||+||.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 999999999999999999999999999999999999999999999999999999998 4899999999999999999
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHHHHHhhcCCcHHHHHHHHHHHHH--ccCCCChhHHHHHHHhhhcCCChHHHHHHh
Q 046775 178 NDWALKLFQQMKSSEINPNMFTYTSALKACAGMELKELGRQLHCSLIK--MEIKSDPIVGVGLVDMYAKCGSMDEARMIF 255 (771)
Q Consensus 178 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~--~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 255 (771)
+++|+++|++|...|+.||..||+.+|.+|++.|+++.|.++|..|.+ .|+.||..+|++||++|+++|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987 679999999999999999999999999999
Q ss_pred hhCCC----CCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCChhHHHHHHHHHHHhcCCC
Q 046775 256 HLMPE----KNLIAWNIVISGHLQNGGDMEAASLFPWMYREGVGFDQTTLSTVLKSVASFQAIGVCKQVHALSVKTAFES 331 (771)
Q Consensus 256 ~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~ 331 (771)
+.|.+ |+..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99986 56799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHhHHHHHHHhcCCHHHHHHHHHhcC----CCceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHH
Q 046775 332 DDYIVNSLIDAYGKCGHVEDAVKIFKESS----AVDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLN 407 (771)
Q Consensus 332 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 407 (771)
|..+|++||++|+++|++++|.++|++|. .||.++||+||.+|++.|++++|+++|++|...|+.||..||++++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999985 58999999999999999999999999999999999999999999999
Q ss_pred HhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHH----HHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHH
Q 046775 408 ACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNM----YAKCGSIDDADRAFSEIPDRGIVSWSAMIGGLAQHGRGKE 483 (771)
Q Consensus 408 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~----y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 483 (771)
+|++.|+++.|.++|..|.+.|+.||..+|++|+++ |.+++...++...|+.+...+...|+ ++
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~------------~~ 830 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT------------SW 830 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH------------HH
Confidence 999999999999999999999999999999999987 45566666666666655555555665 45
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCC
Q 046775 484 ALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMP 563 (771)
Q Consensus 484 A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~ 563 (771)
|+.+|++|++.|+.||.+||+.+|.++...+.++.+..+++.|... +..|+..+|+++++.+++. .++|..++++|.
T Consensus 831 Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~ 907 (1060)
T PLN03218 831 ALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAA 907 (1060)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHHHHH
Confidence 9999999999999999999999997766777777776666666433 5566678899999998542 478999999993
Q ss_pred ---CCCCHh
Q 046775 564 ---FQANAS 569 (771)
Q Consensus 564 ---~~p~~~ 569 (771)
+.|+..
T Consensus 908 ~~Gi~p~~~ 916 (1060)
T PLN03218 908 SLGVVPSVS 916 (1060)
T ss_pred HcCCCCCcc
Confidence 666654
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.4e-66 Score=596.73 Aligned_cols=549 Identities=17% Similarity=0.224 Sum_probs=482.8
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHccCCCCCcccH-----HHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHH
Q 046775 128 DSDMFSANALVDMYAKVGNLEDAVAVFKDIEHPDIVSW-----NAVIAGCVLHEHNDWALKLFQQMKSSEINPNMFTYTS 202 (771)
Q Consensus 128 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~-----n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 202 (771)
.++...+..++..++++|++++|.++|++|++++.+.| +.++.+|.+.|..++|+++|+.|.. ||..||+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 55677888999999999999999999999998766554 4566779999999999999999974 99999999
Q ss_pred HHHHhhcCCcHHHHHHHHHHHHHccCCCChhHHHHHHHhhhcCCChHHHHHHhhhCC----CCCeehHHHHHHHHHhCCC
Q 046775 203 ALKACAGMELKELGRQLHCSLIKMEIKSDPIVGVGLVDMYAKCGSMDEARMIFHLMP----EKNLIAWNIVISGHLQNGG 278 (771)
Q Consensus 203 ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~ 278 (771)
+|.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++|+++.|.++|++|. .||+++||+||.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 999999999999999999999999999999999999999999999999999999998 4899999999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCChhHHHHHHHHHHH--hcCCCchHHHhHHHHHHHhcCCHHHHHHHH
Q 046775 279 DMEAASLFPWMYREGVGFDQTTLSTVLKSVASFQAIGVCKQVHALSVK--TAFESDDYIVNSLIDAYGKCGHVEDAVKIF 356 (771)
Q Consensus 279 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~--~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f 356 (771)
+++|+++|++|...|+.||..||+.+|.+|++.|+++.|.+++..|.+ .|+.||..+|++|+++|+++|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999986 689999999999999999999999999999
Q ss_pred HhcCC----CceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCC
Q 046775 357 KESSA----VDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMS 432 (771)
Q Consensus 357 ~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~ 432 (771)
++|.+ ++..+||++|.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|..|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99875 56799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046775 433 DTFAGNSLVNMYAKCGSIDDADRAFSEIP----DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLC 508 (771)
Q Consensus 433 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 508 (771)
|..+|++||++|+++|++++|.++|++|. .||+++||+||.+|++.|+.++|+++|++|...|+.||..||..++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999995 78999999999999999999999999999999999999999999999
Q ss_pred HHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHh----hcC-------------------CHHHHHHHHHhCC--
Q 046775 509 ACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILG----RAG-------------------KFQEAMELVDTMP-- 563 (771)
Q Consensus 509 a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~----r~g-------------------~~~eA~~~~~~m~-- 563 (771)
+|.+.|++++|.++|..|.+. |+.|+..+|+++++++. +++ ..++|..+|++|.
T Consensus 763 a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 999999999999999999876 99999999999998743 332 3467999999993
Q ss_pred -CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCCchhHHHHHHHHHhcCCc-hhHHHHHHHHHhCCCccCCccc
Q 046775 564 -FQANASVWGALLGAARIYKNVEVGQHAAEMLF-AIEPEKSSTHVLLSNIYASAGMW-DNVAKVRRFMKDNKLKKEPGMS 640 (771)
Q Consensus 564 -~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~-~l~p~~~~~~~~l~~~y~~~g~~-~~a~~~~~~m~~~g~~k~~g~s 640 (771)
+.||..+|+++++.+...++.+.+..+++.+. +-.+.+..+|..|.+.+ |++ ++|..+++.|...|+. |..|
T Consensus 842 Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~Gi~--p~~~ 916 (1060)
T PLN03218 842 GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLGVV--PSVS 916 (1060)
T ss_pred CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcCCC--CCcc
Confidence 89999999999976667788888877776543 23455778888888876 444 5899999999999986 4444
Q ss_pred e--EEEcCEEEEEEeCCCCccchHHHHHHHHHHHHHHHhcCcccCCccccCC
Q 046775 641 W--IEVKDKVYTFTVGDRSHARSKEIYAKLDEVSDLLNKAGYVPMVETDLHD 690 (771)
Q Consensus 641 ~--i~~~~~~~~f~~~~~~h~~~~~i~~~l~~l~~~~~~~g~~p~~~~~~~~ 690 (771)
. ..+-=.+|.|-.|- .-.-+...|..|...+..--..|.....+|+
T Consensus 917 ~~~~~~~~d~~~~~~~a----a~~~l~~wl~~~~~~~~~g~~lp~~~~~~~~ 964 (1060)
T PLN03218 917 FKKSPIVIDAEELPVFA----AEVYLLTILKGLKHRLAAGAKLPNVTILLPT 964 (1060)
T ss_pred cccCceEEEcccCcchh----HHHHHHHHHHHHHHHHhccCcCCcceeeecc
Confidence 1 01111233333221 1122344556666665443377887776777
No 7
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=100.00 E-value=6.7e-43 Score=296.68 Aligned_cols=106 Identities=62% Similarity=0.994 Sum_probs=100.1
Q ss_pred ccceEEEcCEEEEEEeCCCCccchHHHHHHHHHHHHHHHhcCcccCCccccCCcchhhh--------hhhhccccHHHHH
Q 046775 638 GMSWIEVKDKVYTFTVGDRSHARSKEIYAKLDEVSDLLNKAGYVPMVETDLHDVEESEK--------EQLLYHHSEKLAV 709 (771)
Q Consensus 638 g~s~i~~~~~~~~f~~~~~~h~~~~~i~~~l~~l~~~~~~~g~~p~~~~~~~~~~~~~~--------~~~~~~hse~la~ 709 (771)
||||+++ |.|++||.+||+. ++..++...||+|++..++||++++++ +..+++|||||||
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 8999987 9999999999998 556777889999999999999988777 6799999999999
Q ss_pred HcccccCCCCCeEEEeecc-ccccCccchhhhhhhhhcceEEEecCCcccccc
Q 046775 710 AFGLIATPPGATIRVKKNL-RICVDCHTSFEFISKIVSREIIVRDVNRFHHFR 761 (771)
Q Consensus 710 ~~~~~~~~~~~~~~~~kn~-r~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~ 761 (771)
|||||++ ||+||+ |||+|||+|+|+||+++||+|||||++||||||
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999999 999999 999999999999999999999999999999997
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.7e-33 Score=339.84 Aligned_cols=614 Identities=12% Similarity=0.038 Sum_probs=315.1
Q ss_pred hhcCCCchhHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCChHHHHHHHhcCCCCC---cchHHHHHHHHHhCCChhHHH
Q 046775 5 CTSKKDLFLGLQVHGIVVFTGFDSDEFVANSLVVMYAKCGNFIDSRRLFDAIPERS---VVSWNSLFSCYVHCDFLEEAV 81 (771)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~---~~~~n~li~~~~~~g~~~~A~ 81 (771)
+...|+++.|...+..+.+..... ..........+...|++++|...|+.+.+.+ ...+..+...+...|++++|.
T Consensus 237 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~ 315 (899)
T TIGR02917 237 LIEAGEFEEAEKHADALLKKAPNS-PLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAY 315 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHH
Confidence 345566677777666666654332 2222222333445566666666666543321 222333344455566666666
Q ss_pred HHHHHhHHCCCCCCcchHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHccCCC--
Q 046775 82 CFFKEMVLSGIRPNEFSLSSMINACAGSGDSLLGRKIHGYSIKLGYDSDMFSANALVDMYAKVGNLEDAVAVFKDIEH-- 159 (771)
Q Consensus 82 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-- 159 (771)
..|+++.... +.+...+..+...+...|+++.|.+.+..+++.. +.+...++.+...|.+.|++++|.+.|+++.+
T Consensus 316 ~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 393 (899)
T TIGR02917 316 QYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD 393 (899)
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 6666655432 2223344445555556666666666666555543 33445555566666666666666666655443
Q ss_pred -CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhcCCcHHHHHHHHHHHHHccCCCChhHHHHH
Q 046775 160 -PDIVSWNAVIAGCVLHEHNDWALKLFQQMKSSEINPNMFTYTSALKACAGMELKELGRQLHCSLIKMEIKSDPIVGVGL 238 (771)
Q Consensus 160 -~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~L 238 (771)
.+...|..+...+...|++++|++.|+++......+ ......++..+...|+.+.|..++..+.+.. +.+..++..+
T Consensus 394 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 471 (899)
T TIGR02917 394 PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPEL-GRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLL 471 (899)
T ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHH
Confidence 223345555555555566666666665555432211 1223334444555555555555555554432 2344455555
Q ss_pred HHhhhcCCChHHHHHHhhhCCC---CCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCChh
Q 046775 239 VDMYAKCGSMDEARMIFHLMPE---KNLIAWNIVISGHLQNGGDMEAASLFPWMYREGVGFDQTTLSTVLKSVASFQAIG 315 (771)
Q Consensus 239 i~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~ 315 (771)
...|...|+.++|...|+++.+ .+...+..+...+...|++++|...|+++...+ +.+..++..+...+...|+.+
T Consensus 472 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 550 (899)
T TIGR02917 472 GAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEE 550 (899)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHH
Confidence 5555555555555555555432 223344555555555555555555555555432 223444445555555555555
Q ss_pred HHHHHHHHHHHhcCCCchHHHhHHHHHHHhcCCHHHHHHHHHhcCC---CceecHHHHHHHHHHcCChHHHHHHHHHHhc
Q 046775 316 VCKQVHALSVKTAFESDDYIVNSLIDAYGKCGHVEDAVKIFKESSA---VDLVACTSMITAYAQFGLGEEALKLYLEMQD 392 (771)
Q Consensus 316 ~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 392 (771)
.+...+..+.+.+ +.+...+..+...|.+.|++++|..+++++.. .+...|..+...|.+.|++++|+..|+++.+
T Consensus 551 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 629 (899)
T TIGR02917 551 EAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA 629 (899)
T ss_pred HHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555554443 23334445555555555555555555555432 2344555555555555555555555555544
Q ss_pred CCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHH
Q 046775 393 REINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPD---RGIVSWS 469 (771)
Q Consensus 393 ~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~ 469 (771)
.. +.+...+..+...+...|++++|..++..+.+.. +.+...+..++..+.+.|++++|.++++.+.. .+...|.
T Consensus 630 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 707 (899)
T TIGR02917 630 LQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFE 707 (899)
T ss_pred hC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHH
Confidence 32 2233344445555555555555555555555433 33445555555555555555555555555541 2234455
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhc
Q 046775 470 AMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRA 549 (771)
Q Consensus 470 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~ 549 (771)
.+...+...|++++|++.|+++... .|+..++..+..++.+.|++++|.+.++.+.+.. +.+...+..+..+|.+.
T Consensus 708 ~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~ 783 (899)
T TIGR02917 708 LEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH--PNDAVLRTALAELYLAQ 783 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHC
Confidence 5555555555555555555555552 3444444455555555555555555555554431 22344455555555555
Q ss_pred CCHHHHHHHHHhCC-CC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHH
Q 046775 550 GKFQEAMELVDTMP-FQ-ANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRF 627 (771)
Q Consensus 550 g~~~eA~~~~~~m~-~~-p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 627 (771)
|++++|.+.++++. .. ++..++..+...+...|+ +.|...+++++++.|+++..+..++.+|...|++++|.++++.
T Consensus 784 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 862 (899)
T TIGR02917 784 KDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRK 862 (899)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555555555542 22 233455555555555555 4455555555555555555555555555555555555555555
Q ss_pred HHhCC
Q 046775 628 MKDNK 632 (771)
Q Consensus 628 m~~~g 632 (771)
+.+.+
T Consensus 863 a~~~~ 867 (899)
T TIGR02917 863 AVNIA 867 (899)
T ss_pred HHhhC
Confidence 55443
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6.6e-33 Score=334.61 Aligned_cols=610 Identities=12% Similarity=0.029 Sum_probs=474.6
Q ss_pred CCCchhHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHH
Q 046775 8 KKDLFLGLQVHGIVVFTGFDSDEFVANSLVVMYAKCGNFIDSRRLFDAIPE---RSVVSWNSLFSCYVHCDFLEEAVCFF 84 (771)
Q Consensus 8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~---~~~~~~n~li~~~~~~g~~~~A~~l~ 84 (771)
.|+...|...+..+++..+ .+..++..+...+...|++++|...|+.+.+ .+...+......+.+.|++++|+..|
T Consensus 206 ~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 284 (899)
T TIGR02917 206 LGNIELALAAYRKAIALRP-NNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETL 284 (899)
T ss_pred cCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHH
Confidence 3444444444444443322 2333444444444445555555554444322 11112222222333445555555555
Q ss_pred HHhHHCCCCCCc-chHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHccCCC---C
Q 046775 85 KEMVLSGIRPNE-FSLSSMINACAGSGDSLLGRKIHGYSIKLGYDSDMFSANALVDMYAKVGNLEDAVAVFKDIEH---P 160 (771)
Q Consensus 85 ~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~ 160 (771)
+++.+.+ |+. ..+..+...+...|+++.|.+.+..+++.. +.+...+..+...+.+.|++++|...++.+.. .
T Consensus 285 ~~~l~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 361 (899)
T TIGR02917 285 QDALKSA--PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPD 361 (899)
T ss_pred HHHHHhC--CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 5554432 221 122233344556777777888877777764 44556677788888889999999988887754 3
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhcCCcHHHHHHHHHHHHHccCCCChhHHHHHHH
Q 046775 161 DIVSWNAVIAGCVLHEHNDWALKLFQQMKSSEINPNMFTYTSALKACAGMELKELGRQLHCSLIKMEIKSDPIVGVGLVD 240 (771)
Q Consensus 161 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~ 240 (771)
+...|+.+...+.+.|++++|.++|+++.+.. +.+...+..+...+...|+.+.|...+..+.+.... .......++.
T Consensus 362 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 439 (899)
T TIGR02917 362 DPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLIL 439 (899)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHH
Confidence 45678888889999999999999999887653 224455666677778889999999999988876533 3445666788
Q ss_pred hhhcCCChHHHHHHhhhCCC---CCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCChhHH
Q 046775 241 MYAKCGSMDEARMIFHLMPE---KNLIAWNIVISGHLQNGGDMEAASLFPWMYREGVGFDQTTLSTVLKSVASFQAIGVC 317 (771)
Q Consensus 241 ~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 317 (771)
.|.+.|+.++|..+++.+.. .+..+|+.+...|...|++++|...|+++.+.. +.+...+..+...+...|+++.+
T Consensus 440 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A 518 (899)
T TIGR02917 440 SYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDA 518 (899)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHH
Confidence 89999999999999998865 466789999999999999999999999998754 33455667778888899999999
Q ss_pred HHHHHHHHHhcCCCchHHHhHHHHHHHhcCCHHHHHHHHHhcCC---CceecHHHHHHHHHHcCChHHHHHHHHHHhcCC
Q 046775 318 KQVHALSVKTAFESDDYIVNSLIDAYGKCGHVEDAVKIFKESSA---VDLVACTSMITAYAQFGLGEEALKLYLEMQDRE 394 (771)
Q Consensus 318 ~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 394 (771)
.+++..+.+.. +.+..++..+...|.+.|+.++|...|+++.. .+...+..++..|.+.|++++|+++++++...
T Consensus 519 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 596 (899)
T TIGR02917 519 IQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA- 596 (899)
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-
Confidence 99999998875 55778899999999999999999999998743 45667888999999999999999999999864
Q ss_pred CCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHH
Q 046775 395 INPDSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIP---DRGIVSWSAM 471 (771)
Q Consensus 395 ~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~l 471 (771)
.+.+..++..+..++...|+++.|...+..+.+.. +.+...+..+...|.+.|++++|..+|+++. +.+..+|..+
T Consensus 597 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 675 (899)
T TIGR02917 597 APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGL 675 (899)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 35567889999999999999999999999998875 5677888999999999999999999999876 3457899999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCC
Q 046775 472 IGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGK 551 (771)
Q Consensus 472 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~ 551 (771)
+..+...|++++|+.+++.+.+.+ +++...+..+...+...|++++|.+.|+.+... .|+...+..++.++.+.|+
T Consensus 676 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~ 751 (899)
T TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGN 751 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCC
Confidence 999999999999999999999864 456667888888999999999999999999854 6777888899999999999
Q ss_pred HHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHH
Q 046775 552 FQEAMELVDTMP-FQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMK 629 (771)
Q Consensus 552 ~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 629 (771)
+++|.+.++++. ..| +..++..+...+...|+.+.|...++++++..|+++..+..++++|...|+ ++|..+.+.+.
T Consensus 752 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~ 830 (899)
T TIGR02917 752 TAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKAL 830 (899)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHH
Confidence 999999998873 344 566888888899999999999999999999999999999999999999999 88999988876
Q ss_pred hCC
Q 046775 630 DNK 632 (771)
Q Consensus 630 ~~g 632 (771)
+..
T Consensus 831 ~~~ 833 (899)
T TIGR02917 831 KLA 833 (899)
T ss_pred hhC
Confidence 653
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=9e-24 Score=256.25 Aligned_cols=609 Identities=11% Similarity=0.039 Sum_probs=451.9
Q ss_pred hcCCCchhHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCChHHHHHHHhcCCC--CC-cchH----------------HH
Q 046775 6 TSKKDLFLGLQVHGIVVFTGFDSDEFVANSLVVMYAKCGNFIDSRRLFDAIPE--RS-VVSW----------------NS 66 (771)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~--~~-~~~~----------------n~ 66 (771)
-..++.+.|++....+....+. |+.++..+...+.+.|+.++|.+.+++..+ |+ ...+ ..
T Consensus 39 ~~~~~~d~a~~~l~kl~~~~p~-~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~ 117 (1157)
T PRK11447 39 EATHREDLVRQSLYRLELIDPN-NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQ 117 (1157)
T ss_pred HhhCChHHHHHHHHHHHccCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHH
Confidence 4557788888888877665433 577788888899999999999999998755 32 2222 22
Q ss_pred HHHHHHhCCChhHHHHHHHHhHHCCCCCCcc-hHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcC
Q 046775 67 LFSCYVHCDFLEEAVCFFKEMVLSGIRPNEF-SLSSMINACAGSGDSLLGRKIHGYSIKLGYDSDMFSANALVDMYAKVG 145 (771)
Q Consensus 67 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g 145 (771)
+...+.+.|++++|+..|+.+.... +|+.. ............++.++|.+.++.+++.. +.+...+..+..++...|
T Consensus 118 ~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g 195 (1157)
T PRK11447 118 QARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSG 195 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccC
Confidence 3446788999999999999988643 33322 11112222334689999999999999986 556778889999999999
Q ss_pred ChhHHHHHHccCCCCCc------ccH-----------------HHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHH
Q 046775 146 NLEDAVAVFKDIEHPDI------VSW-----------------NAVIAGCVLHEHNDWALKLFQQMKSSEINPNMFTYTS 202 (771)
Q Consensus 146 ~~~~A~~~f~~~~~~~~------~~~-----------------n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 202 (771)
+.++|.+.|+++..... ..| ...+..+-.......|...+.++......|+... ..
T Consensus 196 ~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~ 274 (1157)
T PRK11447 196 RRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RA 274 (1157)
T ss_pred CHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HH
Confidence 99999999998754211 111 1111111122234455556655544333343222 12
Q ss_pred HHHHhhcCCcHHHHHHHHHHHHHccCCCChhHHHHHHHhhhcCCChHHHHHHhhhCCC--CCe---ehHHHH--------
Q 046775 203 ALKACAGMELKELGRQLHCSLIKMEIKSDPIVGVGLVDMYAKCGSMDEARMIFHLMPE--KNL---IAWNIV-------- 269 (771)
Q Consensus 203 ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~---~~~~~l-------- 269 (771)
.-.++...|+++.|...+..+++.. +.+..++..|...|.+.|+.++|+..|++..+ |+. ..|..+
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 2345667899999999999999864 33677888999999999999999999998765 322 223332
Q ss_pred ----HHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCChhHHHHHHHHHHHhcCCCchHHHhHHHHHHHh
Q 046775 270 ----ISGHLQNGGDMEAASLFPWMYREGVGFDQTTLSTVLKSVASFQAIGVCKQVHALSVKTAFESDDYIVNSLIDAYGK 345 (771)
Q Consensus 270 ----i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k 345 (771)
...+.+.|++++|...|++..... +.+...+..+-..+...|+.+.|.+.+..+++.. +.+...+..+...|.
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~- 430 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR- 430 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-
Confidence 335678999999999999998864 2345556667788889999999999999999865 344566677777775
Q ss_pred cCCHHHHHHHHHhcCCCc------------eecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCC-HhhHHHHHHHhhcc
Q 046775 346 CGHVEDAVKIFKESSAVD------------LVACTSMITAYAQFGLGEEALKLYLEMQDREINPD-SFVCSSLLNACANL 412 (771)
Q Consensus 346 ~g~~~~A~~~f~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~ 412 (771)
.++.++|...++.++... ...+..+...+...|++++|++.|++..+. .|+ ...+..+...+.+.
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 467899999998776422 223555677888999999999999999874 454 45667788889999
Q ss_pred cchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC----hh---------HHHHHHHHHHHcC
Q 046775 413 SAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPDRG----IV---------SWSAMIGGLAQHG 479 (771)
Q Consensus 413 ~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~----~~---------~~~~li~~~~~~g 479 (771)
|++++|...++.+++.. +.++.....+...+.+.|+.++|...++.++... .. .+..+...+...|
T Consensus 509 G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 509 GQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 99999999999998754 4556666666677888999999999999987322 11 1234567788999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHH
Q 046775 480 RGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAMEL 558 (771)
Q Consensus 480 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~ 558 (771)
+.++|+++++. .+++...+..+...+...|+.++|+..|+...+. .|+ ...+..++.+|...|++++|++.
T Consensus 588 ~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 588 KEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred CHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999882 3445556777888899999999999999999864 565 67888999999999999999999
Q ss_pred HHhCC-CCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch------hHHHHHHHHHhcCCchhHHHHHHHH-H
Q 046775 559 VDTMP-FQAN-ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSS------THVLLSNIYASAGMWDNVAKVRRFM-K 629 (771)
Q Consensus 559 ~~~m~-~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~------~~~~l~~~y~~~g~~~~a~~~~~~m-~ 629 (771)
++..+ ..|+ ..++..+..++...|+.+.|...++++++..|+++. .+..++.+|...|++++|...++.. .
T Consensus 660 l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 660 LAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99875 4554 447777888888999999999999999998876553 5556799999999999999986655 4
Q ss_pred hCCC
Q 046775 630 DNKL 633 (771)
Q Consensus 630 ~~g~ 633 (771)
..|+
T Consensus 740 ~~~~ 743 (1157)
T PRK11447 740 ASGI 743 (1157)
T ss_pred hcCC
Confidence 4455
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=2.1e-23 Score=253.05 Aligned_cols=587 Identities=11% Similarity=0.018 Sum_probs=436.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchH----------
Q 046775 33 ANSLVVMYAKCGNFIDSRRLFDAIPE---RSVVSWNSLFSCYVHCDFLEEAVCFFKEMVLSGIRPNEFSL---------- 99 (771)
Q Consensus 33 ~~~ll~~y~~~g~~~~A~~~f~~~~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---------- 99 (771)
.-..+..+...++.+.|++.++++.. .|+..+..++..+.+.|+.++|.+.+++..+. .|+...+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~--~P~~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQL--APDSNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHhc
Confidence 33455677788999999999988643 46778889999999999999999999999875 3554433
Q ss_pred -------HHHHHHHhcCCCcHHHHHHHHHHHHhCCCCChhh-HHHHHHHHHhcCChhHHHHHHccCCC--C-CcccHHHH
Q 046775 100 -------SSMINACAGSGDSLLGRKIHGYSIKLGYDSDMFS-ANALVDMYAKVGNLEDAVAVFKDIEH--P-DIVSWNAV 168 (771)
Q Consensus 100 -------~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~-~~~Li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~n~l 168 (771)
..+.+.+...|++++|.+.+..+++.. +++... ...+.......|+.++|.+.|+++.. | +...+..+
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~L 187 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTL 187 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 222345778899999999999998765 333322 11122223345999999999999875 4 34567888
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCC----------------CCh---hhHHHHHHHhhcCCcHHHHHHHHHHHHHccCC
Q 046775 169 IAGCVLHEHNDWALKLFQQMKSSEIN----------------PNM---FTYTSALKACAGMELKELGRQLHCSLIKMEIK 229 (771)
Q Consensus 169 i~~~~~~g~~~~A~~l~~~m~~~g~~----------------p~~---~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~ 229 (771)
...+...|+.++|++.|+++...... ++. ..+...+..+........+...+....+....
T Consensus 188 A~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~d 267 (1157)
T PRK11447 188 ALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLAD 267 (1157)
T ss_pred HHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccC
Confidence 88999999999999999998654210 000 01111222222223344455555554433333
Q ss_pred CChhHHHHHHHhhhcCCChHHHHHHhhhCCC---CCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH-hhHH---
Q 046775 230 SDPIVGVGLVDMYAKCGSMDEARMIFHLMPE---KNLIAWNIVISGHLQNGGDMEAASLFPWMYREGVGFDQ-TTLS--- 302 (771)
Q Consensus 230 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~--- 302 (771)
|+.. ...+...+...|++++|...|++... .+...+..+...|.+.|++++|+..|++..+....... ..+.
T Consensus 268 p~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll 346 (1157)
T PRK11447 268 PAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL 346 (1157)
T ss_pred cchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH
Confidence 3322 22345677889999999999998765 35678899999999999999999999998875432211 1111
Q ss_pred ---------HHHHHHhccCChhHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcCCHHHHHHHHHhcCC---CceecHHHH
Q 046775 303 ---------TVLKSVASFQAIGVCKQVHALSVKTAFESDDYIVNSLIDAYGKCGHVEDAVKIFKESSA---VDLVACTSM 370 (771)
Q Consensus 303 ---------~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~l 370 (771)
..-..+...|++++|...+..+++.. +.+...+..|...|...|++++|++.|++... .+...+..+
T Consensus 347 ~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L 425 (1157)
T PRK11447 347 KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGL 425 (1157)
T ss_pred HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 11235667899999999999999875 45667788899999999999999999998664 344566677
Q ss_pred HHHHHHcCChHHHHHHHHHHhcCCCCC--------CHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 046775 371 ITAYAQFGLGEEALKLYLEMQDREINP--------DSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVN 442 (771)
Q Consensus 371 i~~~~~~g~~~~A~~l~~~m~~~g~~p--------~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 442 (771)
...|. .++.++|+.+++.+....... ....+......+...|++++|.+.+..+++.. +.++.++..+..
T Consensus 426 ~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~ 503 (1157)
T PRK11447 426 ANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQ 503 (1157)
T ss_pred HHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 77774 467899999988765431100 01223445566778899999999999999876 557788889999
Q ss_pred HHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHH
Q 046775 443 MYAKCGSIDDADRAFSEIP---DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHI---------TLVSVLCAC 510 (771)
Q Consensus 443 ~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~---------t~~~ll~a~ 510 (771)
.|.+.|++++|...|+++. ..+...+..+...+...|+.++|+..++++......++.. .+.....++
T Consensus 504 ~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 504 DLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 9999999999999999874 2345566666667788999999999998865433233221 234556678
Q ss_pred hccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC-HhHHHHHHHHHHhcCCHHHHH
Q 046775 511 NHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMP-FQAN-ASVWGALLGAARIYKNVEVGQ 588 (771)
Q Consensus 511 ~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p~-~~~~~~ll~a~~~~~~~~~a~ 588 (771)
...|+.++|.++++. .+++...+..+.+.+.+.|++++|++.+++.. ..|+ ...+..+...+...|+.+.|+
T Consensus 584 ~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 584 RDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 899999999999872 24456677889999999999999999999873 5664 568999999999999999999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 046775 589 HAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDNK 632 (771)
Q Consensus 589 ~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 632 (771)
..++++.+..|+++..+..++++|...|++++|.++++.+....
T Consensus 658 ~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 658 AQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 99999999999999999999999999999999999999887654
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.92 E-value=1.3e-19 Score=210.16 Aligned_cols=560 Identities=11% Similarity=0.021 Sum_probs=378.5
Q ss_pred HcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhcCCCcHHHHH
Q 046775 41 AKCGNFIDSRRLFDAIPE---RSVVSWNSLFSCYVHCDFLEEAVCFFKEMVLSGIRPNEFSLSSMINACAGSGDSLLGRK 117 (771)
Q Consensus 41 ~~~g~~~~A~~~f~~~~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 117 (771)
...|++++|...|+...+ .+...+..|.+.|.+.|++++|+..+++..+. .|+...|..++... ++...|..
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVT 129 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHH
Confidence 344999999999998754 34667889999999999999999999999875 56666666655333 88889999
Q ss_pred HHHHHHHhCCCCChhhHHHHHHH--------HHhcCChhHHHHHHccCCCCC--cccHHH-HHHHHHhCCChhHHHHHHH
Q 046775 118 IHGYSIKLGYDSDMFSANALVDM--------YAKVGNLEDAVAVFKDIEHPD--IVSWNA-VIAGCVLHEHNDWALKLFQ 186 (771)
Q Consensus 118 i~~~~~~~g~~~~~~~~~~Li~~--------y~~~g~~~~A~~~f~~~~~~~--~~~~n~-li~~~~~~g~~~~A~~l~~ 186 (771)
+++.+++.. +.+..++..+... |.+.+...++++ .+...|+ ...... +...|.+.+++++|++++.
T Consensus 130 ~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 130 TVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 999999986 4455666666665 888877777776 3333343 433344 4889999999999999999
Q ss_pred HHHhCCCCCChhhHHHHHHHhhc-CCcHHHHHHHHHHHHHccCCCChhHHHHHHHhhhcCCChHHHHHHhhhCCC-----
Q 046775 187 QMKSSEINPNMFTYTSALKACAG-MELKELGRQLHCSLIKMEIKSDPIVGVGLVDMYAKCGSMDEARMIFHLMPE----- 260 (771)
Q Consensus 187 ~m~~~g~~p~~~t~~~ll~a~~~-~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~----- 260 (771)
++.+.+... ..-...+-.++.. .++ +.+..++.. .+..++.+..++.+.|.+.|+.++|.+++++++.
T Consensus 207 ~L~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 207 EARQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHHhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 999986433 3334444456665 355 666666442 3446888999999999999999999999999874
Q ss_pred CCeehHHHHH------------------------------HHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHh-
Q 046775 261 KNLIAWNIVI------------------------------SGHLQNGGDMEAASLFPWMYREGVGFDQTTLSTVLKSVA- 309 (771)
Q Consensus 261 ~~~~~~~~li------------------------------~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~- 309 (771)
|...+|--.+ .-+.+.+.++.+.++ ....|..... .++...
T Consensus 281 ~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~--~~r~~~~ 352 (987)
T PRK09782 281 AQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKL------LATLPANEML--EERYAVS 352 (987)
T ss_pred CccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHH------hcCCCcchHH--HHHHhhc
Confidence 3333332222 223334444433322 1233333322 222222
Q ss_pred -ccCChhHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcCCHHHHHHHHHhcCC--Cce----ecHHHHHHHHHHcCC---
Q 046775 310 -SFQAIGVCKQVHALSVKTAFESDDYIVNSLIDAYGKCGHVEDAVKIFKESSA--VDL----VACTSMITAYAQFGL--- 379 (771)
Q Consensus 310 -~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~~----~~~~~li~~~~~~g~--- 379 (771)
..+...++.+....+.+.. +.+....--+.-...+.|+.++|..+|++..+ ++. ..-+-++..|.+.+.
T Consensus 353 ~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 431 (987)
T PRK09782 353 VATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLAT 431 (987)
T ss_pred cccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccc
Confidence 2245555555555555442 23444444445556678888888888877554 222 233456677776665
Q ss_pred hHHHHHHHH------------HH----------hc-CCCCCC---HhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCc
Q 046775 380 GEEALKLYL------------EM----------QD-REINPD---SFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSD 433 (771)
Q Consensus 380 ~~~A~~l~~------------~m----------~~-~g~~p~---~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~ 433 (771)
..+++.+-+ ++ .. .+..|+ ...+..+..++.. +..++|...+....... |+
T Consensus 432 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd 508 (987)
T PRK09782 432 PAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PD 508 (987)
T ss_pred hHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--Cc
Confidence 444443311 11 10 112233 3344444444443 77777888777666554 44
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHH
Q 046775 434 TFAGNSLVNMYAKCGSIDDADRAFSEIP--DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHI-TLVSVLCAC 510 (771)
Q Consensus 434 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~ 510 (771)
......+...+...|++++|...|+++. .++...|..+...+.+.|+.++|+..|++.++. .|+.. .+..+....
T Consensus 509 ~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l 586 (987)
T PRK09782 509 AWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQR 586 (987)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHH
Confidence 3333344555568899999999888765 244456777777888889999999999888874 35443 333444455
Q ss_pred hccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHh-HHHHHHHHHHhcCCHHHHH
Q 046775 511 NHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTM-PFQANAS-VWGALLGAARIYKNVEVGQ 588 (771)
Q Consensus 511 ~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~a~~~~~~~~~a~ 588 (771)
...|++++|...|++..+ +.|+...|..+..++.+.|++++|++.+++. ...|+.. .+..+..++...|+.+.|.
T Consensus 587 ~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi 663 (987)
T PRK09782 587 YIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSR 663 (987)
T ss_pred HhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 566899999999888874 4677788888888899999999999888877 3667544 6777777888888999999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 046775 589 HAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 589 ~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
..++++++++|+++..+..|+.+|...|+.++|...++...+.
T Consensus 664 ~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 664 EMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999998887776554
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.92 E-value=7.2e-20 Score=212.12 Aligned_cols=597 Identities=11% Similarity=0.028 Sum_probs=384.6
Q ss_pred cCCCchhHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCChHHHHHHHhcCCCCC---cchHHHHHHHHHhCCChhHHHHH
Q 046775 7 SKKDLFLGLQVHGIVVFTGFDSDEFVANSLVVMYAKCGNFIDSRRLFDAIPERS---VVSWNSLFSCYVHCDFLEEAVCF 83 (771)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~---~~~~n~li~~~~~~g~~~~A~~l 83 (771)
..|+..+|...+.++++..+.. ..++..|...|.+.|+.++|+..+++..+.+ ...+.. +..+ +++++|..+
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~-La~i---~~~~kA~~~ 130 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERS-LAAI---PVEVKSVTT 130 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH-HHHh---ccChhHHHH
Confidence 3488899999999998877664 7788889999999999999999988775432 233333 2222 777777788
Q ss_pred HHHhHHCCCCCCcc-hHHHH----------------------------------------HHHHhcCCCcHHHHHHHHHH
Q 046775 84 FKEMVLSGIRPNEF-SLSSM----------------------------------------INACAGSGDSLLGRKIHGYS 122 (771)
Q Consensus 84 ~~~m~~~g~~p~~~-t~~~l----------------------------------------l~~~~~~~~~~~a~~i~~~~ 122 (771)
++++... .|+.. ++..+ .+.+...++++.+..++..+
T Consensus 131 ye~l~~~--~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L 208 (987)
T PRK09782 131 VEELLAQ--QKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEA 208 (987)
T ss_pred HHHHHHh--CCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 7777654 23222 22111 33344444444444444444
Q ss_pred HHhCCCCChhhHHHHHHHHHh-cCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCC-CChhhH
Q 046775 123 IKLGYDSDMFSANALVDMYAK-VGNLEDAVAVFKDIEHPDIVSWNAVIAGCVLHEHNDWALKLFQQMKSSEIN-PNMFTY 200 (771)
Q Consensus 123 ~~~g~~~~~~~~~~Li~~y~~-~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~ 200 (771)
.+.+ +.+......|-.+|.. .++ +.+..+++.....+...+..+...|.+.|+.++|.++++++...-.. |+..++
T Consensus 209 ~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~ 286 (987)
T PRK09782 209 RQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSW 286 (987)
T ss_pred HhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHH
Confidence 4443 2222223333334444 233 44444444322234444555555555555555555555554433222 333333
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHHHHccCCCC-hhHHHHHHHhhhcCCChHHHHHHhhhCCCCCeehHHHHHH--HHHhCC
Q 046775 201 TSALKACAGMELKELGRQLHCSLIKMEIKSD-PIVGVGLVDMYAKCGSMDEARMIFHLMPEKNLIAWNIVIS--GHLQNG 277 (771)
Q Consensus 201 ~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~-~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~--~~~~~g 277 (771)
..++.-..... ..+..-+.. .+.++ ....-.++..+.+.+..+.+.++.+ ....+. . ..+. +....+
T Consensus 287 ~~~l~r~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~--~~~r~~~~~~~~ 356 (987)
T PRK09782 287 LYLLSKYSANP--VQALANYTV----QFADNRQYVVGATLPVLLKEGQYDAAQKLLA-TLPANE-M--LEERYAVSVATR 356 (987)
T ss_pred HHHHHhccCch--hhhccchhh----hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-CCCcch-H--HHHHHhhccccC
Confidence 33322221111 000000000 00000 1122334778888888887777744 222222 1 1222 222346
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCChhHHHHHHHHHHHh-c-CCCchHHHhHHHHHHHhcCC---HHHH
Q 046775 278 GDMEAASLFPWMYREGVGFDQTTLSTVLKSVASFQAIGVCKQVHALSVKT-A-FESDDYIVNSLIDAYGKCGH---VEDA 352 (771)
Q Consensus 278 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g-~~~~~~~~~~Li~~y~k~g~---~~~A 352 (771)
...++...++.|.+.. +-+......+--.....|+.++|.+++...... + -..+....+-|+..|.+.+. ..++
T Consensus 357 ~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 435 (987)
T PRK09782 357 NKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKV 435 (987)
T ss_pred chhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHH
Confidence 6677777777776652 113333333333345677888888888877652 1 12244556677888887766 3333
Q ss_pred HHH-------------------------HHhcCC---C--ceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhH
Q 046775 353 VKI-------------------------FKESSA---V--DLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVC 402 (771)
Q Consensus 353 ~~~-------------------------f~~~~~---~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 402 (771)
..+ +..... . +...|..+..++.. +++++|+..|.+.... .|+....
T Consensus 436 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~ 512 (987)
T PRK09782 436 AILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQH 512 (987)
T ss_pred HHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHH
Confidence 222 111111 2 55677878877776 8999999988887764 4776554
Q ss_pred HHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHH---HHHHHcC
Q 046775 403 SSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPDRGIVSWSAMI---GGLAQHG 479 (771)
Q Consensus 403 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g 479 (771)
..+..++...|+++.|...+..+... +|+...+..+...+.+.|+.++|...|+.....+...++... ......|
T Consensus 513 L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~G 590 (987)
T PRK09782 513 RAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPG 590 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC
Confidence 45555667899999999999987654 344455667788899999999999999987754433333333 3334459
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHH
Q 046775 480 RGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAMEL 558 (771)
Q Consensus 480 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~ 558 (771)
++++|+..|++..+ ..|+...+..+..++.+.|+.++|...|++.... .|+ ...+..+...|...|++++|++.
T Consensus 591 r~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l---~Pd~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 591 QPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALEL---EPNNSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred CHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999998 6788888999999999999999999999998854 666 67788888999999999999999
Q ss_pred HHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 046775 559 VDTM-PFQAN-ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDNKL 633 (771)
Q Consensus 559 ~~~m-~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 633 (771)
+++. ...|+ ..+|..+..++...|+.+.|+..++++++++|+++......+++.....+++.+.+-.+..-..++
T Consensus 666 l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 666 LERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 9987 35665 558999999999999999999999999999999999999999999999999999887665544443
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.87 E-value=9.6e-19 Score=179.54 Aligned_cols=445 Identities=13% Similarity=0.093 Sum_probs=348.1
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhcCCcHHHHHHHHHHHHHccCCCChhHHHHHHHhhhcCC
Q 046775 167 AVIAGCVLHEHNDWALKLFQQMKSSEINPNMFTYTSALKACAGMELKELGRQLHCSLIKMEIKSDPIVGVGLVDMYAKCG 246 (771)
Q Consensus 167 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g 246 (771)
.|..-..+.|++.+|.+.-...-+++ +.+..+...+-..+.+..+++...+--...++.. +--...|..+.+.+-..|
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhc
Confidence 34444556677777776554433321 1111122222222333334443333222222221 223456777888888999
Q ss_pred ChHHHHHHhhhCCC---CCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHH-hccCChhHHHHHHH
Q 046775 247 SMDEARMIFHLMPE---KNLIAWNIVISGHLQNGGDMEAASLFPWMYREGVGFDQTTLSTVLKSV-ASFQAIGVCKQVHA 322 (771)
Q Consensus 247 ~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~-~~~~~~~~a~~i~~ 322 (771)
++++|...++.+.+ ..+..|..+..++...|+.+.|...|.+.++. .|+.....+-+.-+ ...|.+.++..-+.
T Consensus 131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 99999999988876 35678999999999999999999999888764 57666655544433 34688888888887
Q ss_pred HHHHhcCCCchHHHhHHHHHHHhcCCHHHHHHHHHhcCCCce---ecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCH
Q 046775 323 LSVKTAFESDDYIVNSLIDAYGKCGHVEDAVKIFKESSAVDL---VACTSMITAYAQFGLGEEALKLYLEMQDREINPDS 399 (771)
Q Consensus 323 ~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 399 (771)
.+++.. +.-..+|+.|...+-..|++..|+..|++....|+ ..|-.|-..|...+.+++|+..|.+... .+|+.
T Consensus 209 kAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lrpn~ 285 (966)
T KOG4626|consen 209 KAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN--LRPNH 285 (966)
T ss_pred HHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--cCCcc
Confidence 777653 22345788888999999999999999999776444 5677888899999999999999998875 46764
Q ss_pred -hhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CC-ChhHHHHHHHHH
Q 046775 400 -FVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIP--DR-GIVSWSAMIGGL 475 (771)
Q Consensus 400 -~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--~~-~~~~~~~li~~~ 475 (771)
+.+..+...|-..|.++.|...+++.+... +.-+..|+.|..++-..|++.+|.+.|.... .+ -..+.+.|...|
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~ 364 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIY 364 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 567777778889999999999999998865 4456789999999999999999999999876 33 357889999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHH
Q 046775 476 AQHGRGKEALQMFGQMLEDGVLPNHI-TLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQ 553 (771)
Q Consensus 476 ~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~ 553 (771)
...|..++|..+|....+ +.|.-. .++.|...|-+.|++++|+..++... .|.|+ ...|+.|...|-..|+.+
T Consensus 365 ~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHH
Confidence 999999999999999998 888865 78999999999999999999999887 78999 789999999999999999
Q ss_pred HHHHHHHhC-CCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHH
Q 046775 554 EAMELVDTM-PFQANAS-VWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKV 624 (771)
Q Consensus 554 eA~~~~~~m-~~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 624 (771)
+|.+.+.+. .+.|.-. ..+.|.+.++..||+.+|...++.++.++|+-+.+|-.|.-...--..|.|-.+.
T Consensus 440 ~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~ 512 (966)
T KOG4626|consen 440 AAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKR 512 (966)
T ss_pred HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHH
Confidence 999999887 4777644 8889999999999999999999999999999999999998888888888884433
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.82 E-value=1.4e-17 Score=171.18 Aligned_cols=415 Identities=13% Similarity=0.114 Sum_probs=328.9
Q ss_pred HHHhhcCCcHHHHHHHHHHHHHccCCCChhHHHHHHHhhhcCCChHHHHHHhhhCCCC---CeehHHHHHHHHHhCCChh
Q 046775 204 LKACAGMELKELGRQLHCSLIKMEIKSDPIVGVGLVDMYAKCGSMDEARMIFHLMPEK---NLIAWNIVISGHLQNGGDM 280 (771)
Q Consensus 204 l~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~ 280 (771)
..-..+.|++.+|++.-..+-+.. +.+....-.+-..|..+.+.+....--....+. -..+|..+...+-..|+.+
T Consensus 55 ah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~ 133 (966)
T KOG4626|consen 55 AHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQ 133 (966)
T ss_pred HHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHH
Confidence 333445677777766544433322 112222222335566666666544332222222 2357888999999999999
Q ss_pred HHHHHHHHHHHCCCCC-CHhhHHHHHHHHhccCChhHHHHHHHHHHHhcCCCch-HHHhHHHHHHHhcCCHHHHHHHHHh
Q 046775 281 EAASLFPWMYREGVGF-DQTTLSTVLKSVASFQAIGVCKQVHALSVKTAFESDD-YIVNSLIDAYGKCGHVEDAVKIFKE 358 (771)
Q Consensus 281 ~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~-~~~~~Li~~y~k~g~~~~A~~~f~~ 358 (771)
+|+.+++.|.+. +| ....|..+-.++...|+.+.+.+.+...++.. |+. .+.+-+.+..-..|++++|...+.+
T Consensus 134 ~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlk 209 (966)
T KOG4626|consen 134 DALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLK 209 (966)
T ss_pred HHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHHH
Confidence 999999999886 34 35678888888999999999999998888754 433 3344566667778999999998877
Q ss_pred cCC--C-ceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCH-hhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCch
Q 046775 359 SSA--V-DLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDS-FVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDT 434 (771)
Q Consensus 359 ~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~ 434 (771)
..+ | =.+.|+.|...+-..|+..+|+..|.+... +.|+- ..|..+-..+...+.++.|...+.++.... +...
T Consensus 210 Ai~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A 286 (966)
T KOG4626|consen 210 AIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHA 286 (966)
T ss_pred HHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccch
Confidence 543 3 358899999999999999999999999886 46663 456667777777777777777777766544 4556
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHH
Q 046775 435 FAGNSLVNMYAKCGSIDDADRAFSEIPD--RG-IVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHI-TLVSVLCAC 510 (771)
Q Consensus 435 ~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~ 510 (771)
.++..|...|-..|.+|-|...|++..+ |+ ...||.|..++-..|+..+|...+.+.+. +.|+.. ..+.|...+
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni~ 364 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNIY 364 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHHH
Confidence 7778888889999999999999998873 44 57999999999999999999999999999 678876 789999999
Q ss_pred hccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHh-HHHHHHHHHHhcCCHHHH
Q 046775 511 NHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAMELVDTM-PFQANAS-VWGALLGAARIYKNVEVG 587 (771)
Q Consensus 511 ~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~a~~~~~~~~~a 587 (771)
...|.+++|..+|.... .+.|. ....+.|...|-..|++++|..-+++. .++|+.. .++.+...+...|++..|
T Consensus 365 ~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A 441 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAA 441 (966)
T ss_pred HHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHH
Confidence 99999999999999876 45677 677899999999999999999999887 5899865 899999999999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 046775 588 QHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 588 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
...+.+++..+|.-+.++..|+.+|-.+|+..+|..-++.....
T Consensus 442 ~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 442 IQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999887766543
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.82 E-value=4.4e-18 Score=184.27 Aligned_cols=303 Identities=14% Similarity=0.089 Sum_probs=182.5
Q ss_pred hCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhcCCcHHHHHHHHHHHHHccCCC---ChhHHHHHHHhhhcCCChHH
Q 046775 174 LHEHNDWALKLFQQMKSSEINPNMFTYTSALKACAGMELKELGRQLHCSLIKMEIKS---DPIVGVGLVDMYAKCGSMDE 250 (771)
Q Consensus 174 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~---~~~~~~~Li~~y~~~g~~~~ 250 (771)
..|++++|+..|.++.+.+ +.+..++..+...+...|+++.|..+++.+++.+..+ ...++..+...|.+.|+++.
T Consensus 47 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred hcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 3444444555555444431 1122234444444444444444444444444432111 12345667778888888888
Q ss_pred HHHHhhhCCC---CCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCChhHHHHHHHHHHHh
Q 046775 251 ARMIFHLMPE---KNLIAWNIVISGHLQNGGDMEAASLFPWMYREGVGFDQTTLSTVLKSVASFQAIGVCKQVHALSVKT 327 (771)
Q Consensus 251 A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 327 (771)
|..+|+++.+ .+..+++.++..+.+.|++++|.+.++++...+..++...
T Consensus 126 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------------------------- 178 (389)
T PRK11788 126 AEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE--------------------------- 178 (389)
T ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH---------------------------
Confidence 8888888765 3556788888888888888888888888876542221110
Q ss_pred cCCCchHHHhHHHHHHHhcCCHHHHHHHHHhcCC---CceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHH
Q 046775 328 AFESDDYIVNSLIDAYGKCGHVEDAVKIFKESSA---VDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSS 404 (771)
Q Consensus 328 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 404 (771)
....+..+...|.+.|++++|.+.|+++.+ .+...+..+...|.+.|++++|+++|+++...+......++..
T Consensus 179 ----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 254 (389)
T PRK11788 179 ----IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPK 254 (389)
T ss_pred ----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHH
Confidence 011234566667777888888888877543 2345666777788888888888888888876432222345566
Q ss_pred HHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCChhHHHHHHHHHHH---cC
Q 046775 405 LLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIP--DRGIVSWSAMIGGLAQ---HG 479 (771)
Q Consensus 405 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~---~g 479 (771)
+..++...|++++|...+..+.+.. |+...+..++..|.+.|++++|..+|+++. .|+..+++.++..+.. +|
T Consensus 255 l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g 332 (389)
T PRK11788 255 LMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEG 332 (389)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCc
Confidence 6666666777777777666666553 344445666666777777777777766554 3555666666655543 44
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcH
Q 046775 480 RGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLV 516 (771)
Q Consensus 480 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~ 516 (771)
+..+|+.+|++|.+.+++|+.. ..|++.|.+
T Consensus 333 ~~~~a~~~~~~~~~~~~~~~p~------~~c~~cg~~ 363 (389)
T PRK11788 333 RAKESLLLLRDLVGEQLKRKPR------YRCRNCGFT 363 (389)
T ss_pred cchhHHHHHHHHHHHHHhCCCC------EECCCCCCC
Confidence 6667777777776666655554 336555543
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.81 E-value=1.6e-16 Score=181.52 Aligned_cols=249 Identities=14% Similarity=0.097 Sum_probs=192.0
Q ss_pred cCChHHHHHHHHHHhcCC-CCCC-HhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 046775 377 FGLGEEALKLYLEMQDRE-INPD-SFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDAD 454 (771)
Q Consensus 377 ~g~~~~A~~l~~~m~~~g-~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~ 454 (771)
.+++++|++.|++....+ ..|+ ...+..+...+...|++++|...+..+++.. +.+...+..+...|...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 357788888888877654 2343 3445555566677888888888888887754 344567778888888899999999
Q ss_pred HHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhh
Q 046775 455 RAFSEIP---DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNH-ITLVSVLCACNHAGLVAEAKHHFESMEKKF 530 (771)
Q Consensus 455 ~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 530 (771)
..|+... ..+...|..+...|...|++++|+..|++.++ +.|+. ..+..+..++...|++++|...|++..+.
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~- 462 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN- 462 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 9888765 34467888888899999999999999999988 45654 46677778888899999999999988754
Q ss_pred CCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-------hHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 046775 531 GIQPM-QEHYACMIDILGRAGKFQEAMELVDTM-PFQANA-------SVW-GALLGAARIYKNVEVGQHAAEMLFAIEPE 600 (771)
Q Consensus 531 ~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~-------~~~-~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 600 (771)
.|+ ...|..+..++...|++++|.+.+++. ...|+. ..| +..+..+...|+++.|+..++++++++|+
T Consensus 463 --~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 463 --FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred --CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 454 677888899999999999999998875 344431 111 11222233468999999999999999999
Q ss_pred CchhHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 046775 601 KSSTHVLLSNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 601 ~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
+...+..|+.+|...|++++|.+.++...+.
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999998877654
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.81 E-value=1e-17 Score=181.40 Aligned_cols=291 Identities=14% Similarity=0.109 Sum_probs=221.9
Q ss_pred HHHHhcCCHHHHHHHHHhcCCC---ceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCC---HhhHHHHHHHhhcccc
Q 046775 341 DAYGKCGHVEDAVKIFKESSAV---DLVACTSMITAYAQFGLGEEALKLYLEMQDREINPD---SFVCSSLLNACANLSA 414 (771)
Q Consensus 341 ~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~~~ 414 (771)
..+...|++++|...|+++.+. +..+|..+...|.+.|++++|+.+++.+...+..++ ..++..+...+...|+
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3456677888888888776542 334677777788888888888888888776432222 2346666777778888
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC--------hhHHHHHHHHHHHcCChHHHHH
Q 046775 415 YEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPDRG--------IVSWSAMIGGLAQHGRGKEALQ 486 (771)
Q Consensus 415 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~ 486 (771)
++.|..++..+.+.. +.+..+++.++.+|.+.|++++|.+.|+.+.+.+ ...|..+...+.+.|+.++|+.
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 888888888877653 4566778888888888888888888888775322 1245567778888899999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC--cchHHHHHHHHhhcCCHHHHHHHHHhCC
Q 046775 487 MFGQMLEDGVLPN-HITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM--QEHYACMIDILGRAGKFQEAMELVDTMP 563 (771)
Q Consensus 487 l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~--~~~y~~lv~~l~r~g~~~eA~~~~~~m~ 563 (771)
.|+++.+. .|+ ..++..+...+...|++++|.++|+++.+. .|+ ...+..++.+|.+.|++++|.+.++++.
T Consensus 202 ~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 202 LLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99998874 455 446777778888899999999999998754 344 4567888899999999999999998873
Q ss_pred -CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh---cCCchhHHHHHHHHHhCCCccCCc
Q 046775 564 -FQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYAS---AGMWDNVAKVRRFMKDNKLKKEPG 638 (771)
Q Consensus 564 -~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~---~g~~~~a~~~~~~m~~~g~~k~~g 638 (771)
..|+..++..+...+...|+.+.|...++++++..|++.. +..+...+.. .|+.+++..+++.|.+++++..|.
T Consensus 277 ~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 277 EEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 5677777778888899999999999999999999997764 4444444432 569999999999999999998887
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.78 E-value=2.5e-15 Score=174.72 Aligned_cols=186 Identities=6% Similarity=0.004 Sum_probs=143.9
Q ss_pred HHhcCCHHHHHHHHhhCCCCC--hh--HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccC
Q 046775 444 YAKCGSIDDADRAFSEIPDRG--IV--SWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPN-----HITLVSVLCACNHAG 514 (771)
Q Consensus 444 y~k~g~~~~A~~~f~~~~~~~--~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-----~~t~~~ll~a~~~~g 514 (771)
+...|++++|...|+.+...+ .. .--.+...|...|++++|+..|+++... .|. ......+..++...|
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcc
Confidence 346688899999998887432 11 1122466788899999999999988763 332 234556666788889
Q ss_pred cHHHHHHHHHHHHHhhC----------CCCC---cchHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC-HhHHHHHHHHHH
Q 046775 515 LVAEAKHHFESMEKKFG----------IQPM---QEHYACMIDILGRAGKFQEAMELVDTMP-FQAN-ASVWGALLGAAR 579 (771)
Q Consensus 515 ~~~~a~~~~~~m~~~~~----------i~p~---~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p~-~~~~~~ll~a~~ 579 (771)
++++|.++++.+.+... -.|+ ...+..++.++...|++++|++.++++. ..|+ ...|..+.....
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQ 404 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999998875410 0122 1234567888999999999999999873 4554 558899999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 046775 580 IYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 580 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
..|+.+.|+..++++++++|+++..++.++.++...|+|++|..+.+.+.+.
T Consensus 405 ~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 405 ARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999998887664
No 20
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.77 E-value=7.2e-14 Score=151.97 Aligned_cols=578 Identities=13% Similarity=0.096 Sum_probs=384.2
Q ss_pred hHHHHHHHhcCCCCCcc-hHHHHHHHH--HhCCChhHHHHHHHHhHHC--CCCCCcchHHHHHHHHhcCCCcHHHHHHHH
Q 046775 46 FIDSRRLFDAIPERSVV-SWNSLFSCY--VHCDFLEEAVCFFKEMVLS--GIRPNEFSLSSMINACAGSGDSLLGRKIHG 120 (771)
Q Consensus 46 ~~~A~~~f~~~~~~~~~-~~n~li~~~--~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~ 120 (771)
++.|.+.|......++. .--.+..|+ ...+++..|+.+|...... ..+||... .+-..+.+.++.+.|+..+.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHH
Confidence 58888888877542221 112333443 3467999999999996653 24455432 22244568889999999999
Q ss_pred HHHHhCCCCChhhHHHHHHHHHhc---CChhHHHHHHccCC---CCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCC
Q 046775 121 YSIKLGYDSDMFSANALVDMYAKV---GNLEDAVAVFKDIE---HPDIVSWNAVIAGCVLHEHNDWALKLFQQMKSSEIN 194 (771)
Q Consensus 121 ~~~~~g~~~~~~~~~~Li~~y~~~---g~~~~A~~~f~~~~---~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~ 194 (771)
..++... .++.++-.|--+-... ..+..+..++...- ..|++..|.|..-|.-.|+++.+..+...+...-..
T Consensus 224 ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 224 RALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 8887752 2222222222221222 23444555554432 257788899999999999999999999888765311
Q ss_pred --CChhhHHHHHHHhhcCCcHHHHHHHHHHHHHccCCCChhHHHHHHHhhhcCCChHHHHHHhhhCCC--C-CeehHHHH
Q 046775 195 --PNMFTYTSALKACAGMELKELGRQLHCSLIKMEIKSDPIVGVGLVDMYAKCGSMDEARMIFHLMPE--K-NLIAWNIV 269 (771)
Q Consensus 195 --p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~l 269 (771)
.-...|-.+-+++-..|+++.|...|-...+..-...+..+-.|..+|.+.|+++.|...|+.+.. | +..+...+
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL 382 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL 382 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 123457778889999999999999998887765433344556788999999999999999999865 3 33455566
Q ss_pred HHHHHhCC----ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCChhHHHHHHH----HHHHhcCCCchHHHhHHHH
Q 046775 270 ISGHLQNG----GDMEAASLFPWMYREGVGFDQTTLSTVLKSVASFQAIGVCKQVHA----LSVKTAFESDDYIVNSLID 341 (771)
Q Consensus 270 i~~~~~~g----~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~----~~~~~g~~~~~~~~~~Li~ 341 (771)
...|+..+ ..+.|..++.+..+.- +-|...|..+-..+- .+++......+. .+...+-++.+.+.|.+..
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e-~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvas 460 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLE-QTDPWASLDAYGNALDILESKGKQIPPEVLNNVAS 460 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHH
Confidence 66777665 3455555555554432 333444444433333 333333344443 3445666788899999999
Q ss_pred HHHhcCCHHHHHHHHHhcCC-------Ccee------cHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhh-HHHHHH
Q 046775 342 AYGKCGHVEDAVKIFKESSA-------VDLV------ACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFV-CSSLLN 407 (771)
Q Consensus 342 ~y~k~g~~~~A~~~f~~~~~-------~~~~------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~ 407 (771)
.+...|.++.|...|++... +|.. +--.+...+-..++++.|.+.|...... .|+-++ |..++.
T Consensus 461 lhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ 538 (1018)
T KOG2002|consen 461 LHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGC 538 (1018)
T ss_pred HHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhH
Confidence 99999999999999976432 2221 1223445566678889999999998874 455443 222222
Q ss_pred HhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCChhHHHHHHHHHHH-----
Q 046775 408 ACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIP-----DRGIVSWSAMIGGLAQ----- 477 (771)
Q Consensus 408 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~----- 477 (771)
..-..+.+.++...+..+.... ..++.+++-+.+.|.+...+.-|.+-|..+. .+|..+.-+|.+.|.+
T Consensus 539 ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~ 617 (1018)
T KOG2002|consen 539 MARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNP 617 (1018)
T ss_pred HHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccc
Confidence 2223356677777777776654 5677777777878888888877777555443 2354444445444432
Q ss_pred -------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcC
Q 046775 478 -------HGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAG 550 (771)
Q Consensus 478 -------~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g 550 (771)
.+..++|+++|.+.++. -+-|...-+++...+++.|.+.+|+.+|.+..+.. .-....|-.+...|.-.|
T Consensus 618 ~rn~ek~kk~~~KAlq~y~kvL~~-dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~ 694 (1018)
T KOG2002|consen 618 SRNPEKEKKHQEKALQLYGKVLRN-DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQG 694 (1018)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhc-CcchhhhccchhhhhhhccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHH
Confidence 34567888888888874 23355677777778888899999999999888763 234456777888888889
Q ss_pred CHHHHHHHHHhCC---C-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH---------------
Q 046775 551 KFQEAMELVDTMP---F-QANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNI--------------- 611 (771)
Q Consensus 551 ~~~eA~~~~~~m~---~-~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~--------------- 611 (771)
++-.|++.|+..- . +.+..+.+-|..+....|.+.++...+..+..+.|.|+..-..++-+
T Consensus 695 qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t 774 (1018)
T KOG2002|consen 695 QYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRT 774 (1018)
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhccccc
Confidence 9999998887652 2 33556788888888888889999999999999999888765544433
Q ss_pred ----HHhcCCchhHHHHHHHHHhCCCc
Q 046775 612 ----YASAGMWDNVAKVRRFMKDNKLK 634 (771)
Q Consensus 612 ----y~~~g~~~~a~~~~~~m~~~g~~ 634 (771)
-...+..+.|.+++..|...+-+
T Consensus 775 ~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 775 LEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33445567788888888776643
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.76 E-value=3.5e-15 Score=169.80 Aligned_cols=350 Identities=12% Similarity=0.020 Sum_probs=273.0
Q ss_pred cCCChHHHHHHhhhCCCC------CeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCChhHH
Q 046775 244 KCGSMDEARMIFHLMPEK------NLIAWNIVISGHLQNGGDMEAASLFPWMYREGVGFDQTTLSTVLKSVASFQAIGVC 317 (771)
Q Consensus 244 ~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 317 (771)
+..+++.-.-.|...+++ +..-....+..+.+.|++++|+.+++........+....+ .+..+....|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~-~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLR-RWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHH-HHhhhHhhcCCHHHH
Confidence 555666666666665541 2334455677888999999999999998887544444444 344555668999999
Q ss_pred HHHHHHHHHhcCCCchHHHhHHHHHHHhcCCHHHHHHHHHhcCC---CceecHHHHHHHHHHcCChHHHHHHHHHHhcCC
Q 046775 318 KQVHALSVKTAFESDDYIVNSLIDAYGKCGHVEDAVKIFKESSA---VDLVACTSMITAYAQFGLGEEALKLYLEMQDRE 394 (771)
Q Consensus 318 ~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 394 (771)
.+.+..+.+.. +.+...+..+...|.+.|++++|...|++... .+...|..+...+.+.|++++|...++.+....
T Consensus 96 ~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 96 LQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 99999988775 45567788889999999999999999988654 456788889999999999999999999887643
Q ss_pred CCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHH
Q 046775 395 INPDSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIP---DRGIVSWSAM 471 (771)
Q Consensus 395 ~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~l 471 (771)
|+.......+..+...|++++|...+..+.+....++......+...+.+.|+.++|...|+... ..+...+..+
T Consensus 175 --P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 252 (656)
T PRK15174 175 --PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSL 252 (656)
T ss_pred --CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 33333222234577889999999999988776533445555666788899999999999999876 3346788889
Q ss_pred HHHHHHcCChHH----HHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHH
Q 046775 472 IGGLAQHGRGKE----ALQMFGQMLEDGVLPNHI-TLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDI 545 (771)
Q Consensus 472 i~~~~~~g~~~~----A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~ 545 (771)
...|.+.|++++ |+..|++..+ +.|+.. .+..+...+...|++++|..++++..+. .|+ ...+..+..+
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~ 327 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 999999999986 8999999998 567654 7888888999999999999999998854 565 5567778899
Q ss_pred HhhcCCHHHHHHHHHhCC-CCCCHhHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 046775 546 LGRAGKFQEAMELVDTMP-FQANASVWGA-LLGAARIYKNVEVGQHAAEMLFAIEPEKS 602 (771)
Q Consensus 546 l~r~g~~~eA~~~~~~m~-~~p~~~~~~~-ll~a~~~~~~~~~a~~~~~~~~~l~p~~~ 602 (771)
|.+.|++++|.+.++++. ..|+...|.. +..++...|+.+.|...++++++.+|++.
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 999999999999998874 6677654444 45577889999999999999999999865
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.75 E-value=7.8e-15 Score=170.64 Aligned_cols=222 Identities=14% Similarity=0.081 Sum_probs=159.6
Q ss_pred HHHHHHHHHHhcC-CCCCCHh-hHH----HHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 046775 381 EEALKLYLEMQDR-EINPDSF-VCS----SLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDAD 454 (771)
Q Consensus 381 ~~A~~l~~~m~~~-g~~p~~~-t~~----~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~ 454 (771)
++|++.++.+... ...|+.. .+. ..+.++...++.++|...++.+.+.+.+........+.+.|...|++++|.
T Consensus 213 d~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~ 292 (765)
T PRK10049 213 DRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQ 292 (765)
T ss_pred HHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 6677777777753 2223221 111 113344566788888888888877652211112223567888889999998
Q ss_pred HHHhhCCCCC-------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-----------CCCCH---HHHHHHHHHHhcc
Q 046775 455 RAFSEIPDRG-------IVSWSAMIGGLAQHGRGKEALQMFGQMLEDG-----------VLPNH---ITLVSVLCACNHA 513 (771)
Q Consensus 455 ~~f~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------~~pd~---~t~~~ll~a~~~~ 513 (771)
..|+++...+ ...+..+..++...|++++|+++++++.... -.||. ..+..+...+...
T Consensus 293 ~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~ 372 (765)
T PRK10049 293 SILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYS 372 (765)
T ss_pred HHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHc
Confidence 8888765322 2345556677888999999999999888742 12342 2345566678889
Q ss_pred CcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-hHHHHHHHHHHhcCCHHHHHHH
Q 046775 514 GLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAMELVDTM-PFQANA-SVWGALLGAARIYKNVEVGQHA 590 (771)
Q Consensus 514 g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~a~~~~~~~~~a~~~ 590 (771)
|+.++|++.++++... .|+ ...+..+..++.+.|++++|++.+++. ...|+. ..+..+.......|+.+.|+..
T Consensus 373 g~~~eA~~~l~~al~~---~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~ 449 (765)
T PRK10049 373 NDLPQAEMRARELAYN---APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVL 449 (765)
T ss_pred CCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999999999865 454 678889999999999999999999987 467864 4777777788889999999999
Q ss_pred HHHHHhcCCCCchhH
Q 046775 591 AEMLFAIEPEKSSTH 605 (771)
Q Consensus 591 ~~~~~~l~p~~~~~~ 605 (771)
++++++.+|+|+.+.
T Consensus 450 ~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 450 TDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHHhCCCCHHHH
Confidence 999999999998654
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.74 E-value=2.5e-14 Score=163.41 Aligned_cols=269 Identities=11% Similarity=0.039 Sum_probs=205.5
Q ss_pred cCCHHHHHHHHHhcCC------CceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCC-HhhHHHHHHHhhcccchHHH
Q 046775 346 CGHVEDAVKIFKESSA------VDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPD-SFVCSSLLNACANLSAYEQG 418 (771)
Q Consensus 346 ~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a 418 (771)
.+.+++|.+.|+...+ .+...|+.+...+...|++++|+..|++.... .|+ ..++..+...+...|++++|
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHH
Confidence 4678888888877543 23456777888888899999999999988764 455 44677777788888999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 046775 419 KQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIP---DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDG 495 (771)
Q Consensus 419 ~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 495 (771)
...+..+++.. +.+..++..+...|...|++++|...|++.. ..+...|..+...+.+.|++++|+..|++.+.
T Consensus 385 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~-- 461 (615)
T TIGR00990 385 EEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK-- 461 (615)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence 99999888775 5667888999999999999999999999876 33467788888999999999999999999988
Q ss_pred CCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcc--h------HHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 046775 496 VLPN-HITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQE--H------YACMIDILGRAGKFQEAMELVDTM-PFQ 565 (771)
Q Consensus 496 ~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~--~------y~~lv~~l~r~g~~~eA~~~~~~m-~~~ 565 (771)
..|+ ...+..+..++...|++++|++.|+...+ +.|+.. + ++.....+...|++++|.+++++. ...
T Consensus 462 ~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~ 538 (615)
T TIGR00990 462 NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID 538 (615)
T ss_pred hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 4565 55788888899999999999999999774 344321 1 111222344569999999999885 566
Q ss_pred CCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHh
Q 046775 566 ANAS-VWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKD 630 (771)
Q Consensus 566 p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 630 (771)
|+.. .|..+...+...|+.+.|...+++++++.+.....+ .+..|.++.++....++
T Consensus 539 p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~--------~a~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 539 PECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELV--------QAISYAEATRTQIQVQE 596 (615)
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 7654 788888899999999999999999999988654422 22234556666544443
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.74 E-value=5.3e-15 Score=168.33 Aligned_cols=326 Identities=11% Similarity=-0.015 Sum_probs=264.9
Q ss_pred CHhhHHHHHHHHhccCChhHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcCCHHHHHHHHHhcCC---CceecHHHHHHH
Q 046775 297 DQTTLSTVLKSVASFQAIGVCKQVHALSVKTAFESDDYIVNSLIDAYGKCGHVEDAVKIFKESSA---VDLVACTSMITA 373 (771)
Q Consensus 297 d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~ 373 (771)
+......++..+.+.|+++.+..++..++.....+. .....++......|++++|...|+++.. .+...|..+...
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~-~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~ 119 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGR-DLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASV 119 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCch-hHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 344566678888999999999999999988765444 4444455666779999999999998764 456778888999
Q ss_pred HHHcCChHHHHHHHHHHhcCCCCCC-HhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 046775 374 YAQFGLGEEALKLYLEMQDREINPD-SFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDD 452 (771)
Q Consensus 374 ~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~ 452 (771)
+.+.|++++|+..|++.... .|+ ...+..+...+...|++++|...+..+..... .+...+..+. .+.+.|++++
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~~-~l~~~g~~~e 195 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATCL-SFLNKSRLPE 195 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHHH-HHHHcCCHHH
Confidence 99999999999999999874 454 55677788889999999999999998877653 3333443343 4788999999
Q ss_pred HHHHHhhCCCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHH----HHHHH
Q 046775 453 ADRAFSEIPDR----GIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPN-HITLVSVLCACNHAGLVAE----AKHHF 523 (771)
Q Consensus 453 A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~----a~~~~ 523 (771)
|...++.+.+. +...+..+...+...|++++|+..|+++... .|+ ...+..+..++...|+.++ |...|
T Consensus 196 A~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~ 273 (656)
T PRK15174 196 DHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHW 273 (656)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence 99999987643 2334455677889999999999999999984 455 4567778889999999986 89999
Q ss_pred HHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 046775 524 ESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAMELVDTM-PFQAN-ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPE 600 (771)
Q Consensus 524 ~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 600 (771)
++..+ +.|+ ...+..+..+|.+.|++++|...+++. ...|+ ..++..+..++...|+.+.|...++++++.+|+
T Consensus 274 ~~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~ 350 (656)
T PRK15174 274 RHALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV 350 (656)
T ss_pred HHHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 98875 4565 668889999999999999999999887 35665 447888888899999999999999999999999
Q ss_pred CchhHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 046775 601 KSSTHVLLSNIYASAGMWDNVAKVRRFMKDNK 632 (771)
Q Consensus 601 ~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 632 (771)
++..+..++.+|...|++++|...++...+..
T Consensus 351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 88878788999999999999999988876554
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.73 E-value=1.4e-12 Score=142.04 Aligned_cols=522 Identities=13% Similarity=0.053 Sum_probs=366.4
Q ss_pred HHHHHHh--cCCCcHHHHHHHHHHHHhC--CCCChhhHHHHHHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHH---
Q 046775 101 SMINACA--GSGDSLLGRKIHGYSIKLG--YDSDMFSANALVDMYAKVGNLEDAVAVFKDIEHPDIVSWNAVIAGCV--- 173 (771)
Q Consensus 101 ~ll~~~~--~~~~~~~a~~i~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~--- 173 (771)
.+.+||. ..+++..+..+|..++... ..+|+.+. +-..+.++|+.+.|...|.+..+-|...-++++....
T Consensus 167 LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIg--ig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l 244 (1018)
T KOG2002|consen 167 LLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIG--IGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDL 244 (1018)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccch--hhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHH
Confidence 3445544 5678899999999877664 45666543 3356789999999999999988766555555554221
Q ss_pred ---hCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhcCCcHHHHHHHHHHHHHccCCCC--hhHHHHHHHhhhcCCCh
Q 046775 174 ---LHEHNDWALKLFQQMKSSEINPNMFTYTSALKACAGMELKELGRQLHCSLIKMEIKSD--PIVGVGLVDMYAKCGSM 248 (771)
Q Consensus 174 ---~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~--~~~~~~Li~~y~~~g~~ 248 (771)
....+..++.++...-... .-|+...+.|.+-+.-.+++..+..+...++..-.... ...|--+..+|-..|++
T Consensus 245 ~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ 323 (1018)
T KOG2002|consen 245 NFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDF 323 (1018)
T ss_pred HccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccH
Confidence 1123445555555543331 23455667777888889999999999988887652221 22355688899999999
Q ss_pred HHHHHHhhhCCC--CC--eehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH-hhHHHHHHHHhccC----ChhHHHH
Q 046775 249 DEARMIFHLMPE--KN--LIAWNIVISGHLQNGGDMEAASLFPWMYREGVGFDQ-TTLSTVLKSVASFQ----AIGVCKQ 319 (771)
Q Consensus 249 ~~A~~~f~~m~~--~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~~----~~~~a~~ 319 (771)
+.|...|-+... +| +..+--+...|.+.|+.+.+...|++.... .||. .|...+-..++..+ ..+.|..
T Consensus 324 ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~ 401 (1018)
T KOG2002|consen 324 EKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASN 401 (1018)
T ss_pred HHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHH
Confidence 999999987765 32 445666788899999999999999999875 3444 44444444444443 3456666
Q ss_pred HHHHHHHhcCCCchHHHhHHHHHHHhcCC------HHHHHHHHHh-cCCCceecHHHHHHHHHHcCChHHHHHHHHHHhc
Q 046775 320 VHALSVKTAFESDDYIVNSLIDAYGKCGH------VEDAVKIFKE-SSAVDLVACTSMITAYAQFGLGEEALKLYLEMQD 392 (771)
Q Consensus 320 i~~~~~~~g~~~~~~~~~~Li~~y~k~g~------~~~A~~~f~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 392 (771)
+.....+.- +.|...|-.+..+|-...- +..|..++.. +...-+...|.+...+...|.+++|...|.....
T Consensus 402 ~l~K~~~~~-~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~ 480 (1018)
T KOG2002|consen 402 VLGKVLEQT-PVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALG 480 (1018)
T ss_pred HHHHHHhcc-cccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhh
Confidence 666665554 5566667767666665443 2334433332 2335667789999999999999999999998865
Q ss_pred C---CCCCCH-----hh-HHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--
Q 046775 393 R---EINPDS-----FV-CSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIP-- 461 (771)
Q Consensus 393 ~---g~~p~~-----~t-~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~-- 461 (771)
. ...+|. +| --.+....-..++.+.|.+.+..+++.. +.-+..|-.|.-|--..++..+|...+....
T Consensus 481 ~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~ 559 (1018)
T KOG2002|consen 481 KLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNI 559 (1018)
T ss_pred hhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc
Confidence 4 223333 22 2233444456778999999999998875 3334444444444444567788999988776
Q ss_pred -CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhc------------cCcHHHHHHHHHHHH
Q 046775 462 -DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDG-VLPNHITLVSVLCACNH------------AGLVAEAKHHFESME 527 (771)
Q Consensus 462 -~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~------------~g~~~~a~~~~~~m~ 527 (771)
..|+..|+-+...|.....+..|-+-|+...+.- ..+|..+..+|.+-|.. .+..+.|+++|.+..
T Consensus 560 d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL 639 (1018)
T KOG2002|consen 560 DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVL 639 (1018)
T ss_pred ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHH
Confidence 5567788888888999888999999888776632 34788888888876642 234567777777766
Q ss_pred HhhCCCC-CcchHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCc
Q 046775 528 KKFGIQP-MQEHYACMIDILGRAGKFQEAMELVDTMP--FQANASVWGALLGAARIYKNVEVGQHAAEMLFAI--EPEKS 602 (771)
Q Consensus 528 ~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m~--~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l--~p~~~ 602 (771)
+. .| +...-+-+.-.|+..|++.+|.++|.+.. ......+|-.+...|...|++..|.++++..+.. ..+++
T Consensus 640 ~~---dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~ 716 (1018)
T KOG2002|consen 640 RN---DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRS 716 (1018)
T ss_pred hc---CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCH
Confidence 43 34 35555667788999999999999998873 3345568999999999999999999999999884 34567
Q ss_pred hhHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 046775 603 STHVLLSNIYASAGMWDNVAKVRRFMKDNK 632 (771)
Q Consensus 603 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 632 (771)
.....|+.+|...|+|.+|.+.........
T Consensus 717 ~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 717 EVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 788899999999999999999877665543
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.72 E-value=2.9e-13 Score=154.46 Aligned_cols=189 Identities=7% Similarity=0.048 Sum_probs=124.2
Q ss_pred HHHhcCCHHHHHHHHhhCCCCC--h--hHHHHHHHHHHHcCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHhcc
Q 046775 443 MYAKCGSIDDADRAFSEIPDRG--I--VSWSAMIGGLAQHGRGKEALQMFGQMLEDG-----VLPNHITLVSVLCACNHA 513 (771)
Q Consensus 443 ~y~k~g~~~~A~~~f~~~~~~~--~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----~~pd~~t~~~ll~a~~~~ 513 (771)
++.+.|++.++.+.|+.+.... + .+-.+...+|...+++++|+.+|+++.... ..++......|..|+..+
T Consensus 301 aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~ 380 (822)
T PRK14574 301 ALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNES 380 (822)
T ss_pred HHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhc
Confidence 3456667777777777766332 1 233456667777777777777777765532 111222345666777777
Q ss_pred CcHHHHHHHHHHHHHhhC----------CCCC---cchHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHhHHHHHHHHH
Q 046775 514 GLVAEAKHHFESMEKKFG----------IQPM---QEHYACMIDILGRAGKFQEAMELVDTMP-FQA-NASVWGALLGAA 578 (771)
Q Consensus 514 g~~~~a~~~~~~m~~~~~----------i~p~---~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~ 578 (771)
+++++|..+++.+.+.-. -.|+ .+.+..++..+...|++.+|++.++++. ..| |..++..+....
T Consensus 381 e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~ 460 (822)
T PRK14574 381 EQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIY 460 (822)
T ss_pred ccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 777777777777765210 0122 2234456677777888888888887773 444 455777777888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 046775 579 RIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 579 ~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
+..|+...|+..++.+..++|++..+.+.++..+-..|+|.+|.++.+...+.
T Consensus 461 ~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 461 LARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 88888888888888888888888888888888888888888887776655544
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=9.3e-14 Score=137.49 Aligned_cols=312 Identities=16% Similarity=0.164 Sum_probs=205.8
Q ss_pred hcCCCchhHHHHHHHHHHhCCCCChhhHHHHHHHHH--cCCC-------------------------hHHHHHHHhcCCC
Q 046775 6 TSKKDLFLGLQVHGIVVFTGFDSDEFVANSLVVMYA--KCGN-------------------------FIDSRRLFDAIPE 58 (771)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~y~--~~g~-------------------------~~~A~~~f~~~~~ 58 (771)
.+.|.+..+--++.+|...|.+-+..+-..|+..-+ ...+ -+-|.-+|+..|
T Consensus 126 IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~P- 204 (625)
T KOG4422|consen 126 ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLP- 204 (625)
T ss_pred HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcC-
Confidence 456778888888999999888877777666655321 1111 122333444333
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCCChhhHHHHH
Q 046775 59 RSVVSWNSLFSCYVHCDFLEEAVCFFKEMVLSGIRPNEFSLSSMINACAGSGDSLLGRKIHGYSIKLGYDSDMFSANALV 138 (771)
Q Consensus 59 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li 138 (771)
++..+|..||.++++-...+.|.+++++-.....+.+..+||.+|.+.+-. .++++..+|+...+.||.+++|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHH
Confidence 456688999999999999999999999999888899999999999886533 4488999999999999999999999
Q ss_pred HHHHhcCChhHHHHHH----ccCC----CCCcccHHHHHHHHHhCCChhH-HHHHHHHHHhC--C--CCC----ChhhHH
Q 046775 139 DMYAKVGNLEDAVAVF----KDIE----HPDIVSWNAVIAGCVLHEHNDW-ALKLFQQMKSS--E--INP----NMFTYT 201 (771)
Q Consensus 139 ~~y~~~g~~~~A~~~f----~~~~----~~~~~~~n~li~~~~~~g~~~~-A~~l~~~m~~~--g--~~p----~~~t~~ 201 (771)
+..++.|+++.|++.+ .+|. +|...+|..+|..+.+.++..+ |..++.+.... | ++| |...|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 9999999988877643 2222 2455555555555555444422 22333332221 1 111 223344
Q ss_pred HHHHHhhcCCcHHHHHHHHHHHHHccCCCChhHHHHHHHhhhcCCChHHHHHHhhhCCCCCeehHHHHHHHHHhCCChhH
Q 046775 202 SALKACAGMELKELGRQLHCSLIKMEIKSDPIVGVGLVDMYAKCGSMDEARMIFHLMPEKNLIAWNIVISGHLQNGGDME 281 (771)
Q Consensus 202 ~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~ 281 (771)
..+..|.+..+.+.|.+++....... . |...|.. + ....-|..+....++....+.
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~-N------------~~~ig~~------~-----~~~fYyr~~~~licq~es~~~ 416 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGD-N------------WKFIGPD------Q-----HRNFYYRKFFDLICQMESIDV 416 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCC-c------------hhhcChH------H-----HHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555544332110 0 0000000 0 111235556667777788888
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHhccCChhHHHHHHHHHHHhcCCCchHHHhHHHHHHHhc
Q 046775 282 AASLFPWMYREGVGFDQTTLSTVLKSVASFQAIGVCKQVHALSVKTAFESDDYIVNSLIDAYGKC 346 (771)
Q Consensus 282 A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~ 346 (771)
-+..|..|.-.-+-|+..+...+++|....+.++...+++..++..|...+.....-++...++.
T Consensus 417 ~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~ 481 (625)
T KOG4422|consen 417 TLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARD 481 (625)
T ss_pred HHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcC
Confidence 88999999888888999999999999999999999999999988888666555555555444443
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=2e-12 Score=128.25 Aligned_cols=327 Identities=16% Similarity=0.176 Sum_probs=211.6
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhc--CCCcHHH-HHHHHHHHHhCCCCChhhHHHH
Q 046775 61 VVSWNSLFSCYVHCDFLEEAVCFFKEMVLSGIRPNEFSLSSMINACAG--SGDSLLG-RKIHGYSIKLGYDSDMFSANAL 137 (771)
Q Consensus 61 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~--~~~~~~a-~~i~~~~~~~g~~~~~~~~~~L 137 (771)
+++=|.|+.. ..+|...++.-+|+.|++.|+..+...-..|++..+- ..++--+ .+.|-.|.+.| +.+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 4566666654 4567899999999999999988888777777665442 2232222 23333344444 2222333
Q ss_pred HHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhcCCcHHHHH
Q 046775 138 VDMYAKVGNLEDAVAVFKDIEHPDIVSWNAVIAGCVLHEHNDWALKLFQQMKSSEINPNMFTYTSALKACAGMELKELGR 217 (771)
Q Consensus 138 i~~y~~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 217 (771)
|.|++.+ -+|+..| +...++.+||.|.++--..+.|.++|++-.....+.+..+|+.+|.+-+- ..++
T Consensus 191 -----K~G~vAd--L~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K 258 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGK 258 (625)
T ss_pred -----ccccHHH--HHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccH
Confidence 4465544 4455444 55678999999999999999999999999988889999999999987543 3458
Q ss_pred HHHHHHHHccCCCChhHHHHHHHhhhcCCChHHHHHHhh----hCC----CCCeehHHHHHHHHHhCCChhH-HHHHHHH
Q 046775 218 QLHCSLIKMEIKSDPIVGVGLVDMYAKCGSMDEARMIFH----LMP----EKNLIAWNIVISGHLQNGGDME-AASLFPW 288 (771)
Q Consensus 218 ~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~----~m~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~ 288 (771)
.+..+|+...+.||..++|+++...++.|+++.|++.+- +|+ +|...+|..+|..+.+.+++.+ |..++.+
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 899999999999999999999999999999988775432 222 2444555555555555444422 2223332
Q ss_pred HHH----CCCC----CCHhhHHHHHHHHhccCChhHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcCCHHHHHHHHHhcC
Q 046775 289 MYR----EGVG----FDQTTLSTVLKSVASFQAIGVCKQVHALSVKTAFESDDYIVNSLIDAYGKCGHVEDAVKIFKESS 360 (771)
Q Consensus 289 m~~----~g~~----pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~ 360 (771)
... ...+ -|..-|.+.+..|.+..+.+.|.++++......- ++.|.
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N--------------------------~~~ig 392 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDN--------------------------WKFIG 392 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc--------------------------hhhcC
Confidence 222 1111 1222344445555555555555555444322100 00000
Q ss_pred C--CceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHhCC
Q 046775 361 A--VDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKFGF 430 (771)
Q Consensus 361 ~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~ 430 (771)
. ....-|..+....++....+.-+..|..|.-.-+-|+..+..-+++|....+.++...+++..++..|.
T Consensus 393 ~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 393 PDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence 0 011224445666677777888888888888877788888888888888888888888888877777663
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.65 E-value=4.1e-12 Score=145.14 Aligned_cols=441 Identities=10% Similarity=-0.001 Sum_probs=229.0
Q ss_pred HHHcCCChHHHHHHHhcCCCCCcc---hHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHH-H--HHHHHhcCCCc
Q 046775 39 MYAKCGNFIDSRRLFDAIPERSVV---SWNSLFSCYVHCDFLEEAVCFFKEMVLSGIRPNEFSLS-S--MINACAGSGDS 112 (771)
Q Consensus 39 ~y~~~g~~~~A~~~f~~~~~~~~~---~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~--ll~~~~~~~~~ 112 (771)
...+.|+++.|+..|++..+.++. ....++..+...|+.++|+..+++.. .|+...+. . +...+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCH
Confidence 455677777888777777653322 13367777777788888887777766 33322222 2 23456666777
Q ss_pred HHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHh--CCChhHHHHHHHHHHh
Q 046775 113 LLGRKIHGYSIKLGYDSDMFSANALVDMYAKVGNLEDAVAVFKDIEHPDIVSWNAVIAGCVL--HEHNDWALKLFQQMKS 190 (771)
Q Consensus 113 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~--~g~~~~A~~l~~~m~~ 190 (771)
+.|.++++.+++.. +.+..++..++..|...++.++|++.++++...+......+..+|.. .++..+|++.++++.+
T Consensus 119 d~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 119 DQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 78888887777775 33456666777777777777777777777765332222223334333 4455457777777776
Q ss_pred CCCCCC-hhhHHHHHHHhhcCCcHHHHHHHHHHHHHccCCCChhHHHHHHHhhhcCCChHHHHHHhhhCCCCCeehHHHH
Q 046775 191 SEINPN-MFTYTSALKACAGMELKELGRQLHCSLIKMEIKSDPIVGVGLVDMYAKCGSMDEARMIFHLMPEKNLIAWNIV 269 (771)
Q Consensus 191 ~g~~p~-~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l 269 (771)
. .|+ ...+..+..+....|-...|.++...- |+.++-..+... +.+.|.+..+.-..++.. .
T Consensus 198 ~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~l-----~~~~~a~~vr~a~~~~~~----~ 260 (822)
T PRK14574 198 L--APTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQL-----ERDAAAEQVRMAVLPTRS----E 260 (822)
T ss_pred h--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHHH-----HHHHHHHHHhhccccccc----c
Confidence 5 343 334445555555555555555443321 111111110000 011111111111000000 0
Q ss_pred HHHHHhCCChhHHHHHHHHHHHC-CCCCCH-h----hHHHHHHHHhccCChhHHHHHHHHHHHhcCCCchHHHhHHHHHH
Q 046775 270 ISGHLQNGGDMEAASLFPWMYRE-GVGFDQ-T----TLSTVLKSVASFQAIGVCKQVHALSVKTAFESDDYIVNSLIDAY 343 (771)
Q Consensus 270 i~~~~~~g~~~~A~~~~~~m~~~-g~~pd~-~----t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y 343 (771)
-. +.--.+.|+.-++.+... +-.|.. . ...--+-++...++...+.+.++.+...|.+....+.-++.++|
T Consensus 261 ~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~aday 337 (822)
T PRK14574 261 TE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAY 337 (822)
T ss_pred hh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Confidence 00 000134455555555442 222321 1 12234456667777777777777777777666667777788888
Q ss_pred HhcCCHHHHHHHHHhcCCC---------ceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhh-HHHHHHHhhccc
Q 046775 344 GKCGHVEDAVKIFKESSAV---------DLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFV-CSSLLNACANLS 413 (771)
Q Consensus 344 ~k~g~~~~A~~~f~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~ 413 (771)
...+.+++|..+|+++... +......|.-+|...+++++|..+++++... .|-.+. |. ...
T Consensus 338 l~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~--~p~~~~~~~-------~~~ 408 (822)
T PRK14574 338 IDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ--TPYQVGVYG-------LPG 408 (822)
T ss_pred HhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCcEEeccC-------CCC
Confidence 8888888888888775331 1222355677777778888888888777652 221000 00 000
Q ss_pred chHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHH
Q 046775 414 AYEQGKQVHVHIIKFGFMSD-TFAGNSLVNMYAKCGSIDDADRAFSEIP---DRGIVSWSAMIGGLAQHGRGKEALQMFG 489 (771)
Q Consensus 414 ~~~~a~~i~~~~~~~g~~~~-~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~ 489 (771)
....|| ......++..+...|++.+|++.++++. .-|...+..+...+...|++.+|++.++
T Consensus 409 --------------~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k 474 (822)
T PRK14574 409 --------------KEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELK 474 (822)
T ss_pred --------------CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 000011 1122233444455555555555555544 2234455555555555555555555554
Q ss_pred HHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 046775 490 QMLEDGVLPNHI-TLVSVLCACNHAGLVAEAKHHFESMEKK 529 (771)
Q Consensus 490 ~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 529 (771)
.... +.|+.. +......+....|++++|..+.+.+.+.
T Consensus 475 ~a~~--l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 475 AVES--LAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHhh--hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 4443 344432 3444444555555555555555555433
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.63 E-value=8.8e-10 Score=115.32 Aligned_cols=493 Identities=13% Similarity=0.069 Sum_probs=307.1
Q ss_pred HHhcCCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHccCCC---CCcccHHHHHHHHHhCCChhHH
Q 046775 105 ACAGSGDSLLGRKIHGYSIKLGYDSDMFSANALVDMYAKVGNLEDAVAVFKDIEH---PDIVSWNAVIAGCVLHEHNDWA 181 (771)
Q Consensus 105 ~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~n~li~~~~~~g~~~~A 181 (771)
+.....+.+.|+-++...++.- +.+.. |.-+|++...++.|.++++...+ .+...|.+-...=-.+|+.+..
T Consensus 385 aAVelE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv 459 (913)
T KOG0495|consen 385 AAVELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMV 459 (913)
T ss_pred HHHhccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHH
Confidence 3344455556666666666652 22333 33345555666777777765543 4555666655555567777776
Q ss_pred HHHHHH----HHhCCCCCChhhHHHHHHHhhcCCcHHHHHHHHHHHHHccCCCC--hhHHHHHHHhhhcCCChHHHHHHh
Q 046775 182 LKLFQQ----MKSSEINPNMFTYTSALKACAGMELKELGRQLHCSLIKMEIKSD--PIVGVGLVDMYAKCGSMDEARMIF 255 (771)
Q Consensus 182 ~~l~~~----m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~--~~~~~~Li~~y~~~g~~~~A~~~f 255 (771)
.++..+ +...|+..+..-|..=..+|-..|..-.+..+...++..|++.. ..+++.-...+.+.+.++-|+.+|
T Consensus 460 ~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVy 539 (913)
T KOG0495|consen 460 EKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVY 539 (913)
T ss_pred HHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHH
Confidence 666544 44567777777777766777777777777777777777666542 345666666677777777777776
Q ss_pred hhCCC---CCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCChhHHHHHHHHHHHhcCCCc
Q 046775 256 HLMPE---KNLIAWNIVISGHLQNGGDMEAASLFPWMYREGVGFDQTTLSTVLKSVASFQAIGVCKQVHALSVKTAFESD 332 (771)
Q Consensus 256 ~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~ 332 (771)
....+ .+...|...+..--..|..++-..+|++....- +..
T Consensus 540 a~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~------------------------------------pka 583 (913)
T KOG0495|consen 540 AHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC------------------------------------PKA 583 (913)
T ss_pred HHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC------------------------------------Ccc
Confidence 65544 344456555555555566666666666655431 112
Q ss_pred hHHHhHHHHHHHhcCCHHHHHHHHHhcCC---CceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHh
Q 046775 333 DYIVNSLIDAYGKCGHVEDAVKIFKESSA---VDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNAC 409 (771)
Q Consensus 333 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 409 (771)
...+-....-+-+.|++..|+.++.+.-+ .+...|-+-+..-..+.++++|..+|.+... ..|+...|.--+..-
T Consensus 584 e~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~e 661 (913)
T KOG0495|consen 584 EILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLE 661 (913)
T ss_pred hhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHH
Confidence 22233333444445666666665554332 2344565566666666666666666666654 344544444444444
Q ss_pred hcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCC-hhHHHHHHHHHHHcCChHHHHH
Q 046775 410 ANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIP--DRG-IVSWSAMIGGLAQHGRGKEALQ 486 (771)
Q Consensus 410 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~ 486 (771)
--++..++|.++++..++. ++.-...|--+...|-..++++.|++.|..-. -|+ +..|-.+...--+.|+.-+|..
T Consensus 662 r~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ 740 (913)
T KOG0495|consen 662 RYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARS 740 (913)
T ss_pred HHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHH
Confidence 4456667777777666654 34445566667777777777777777776544 233 4456666666666777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 046775 487 MFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMPFQA 566 (771)
Q Consensus 487 l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p 566 (771)
+|++....+ +-|..-|...+..=.+.|..++|..+..+..++ .+.+...|.--|.+..|.++-..+.+.+++.. -
T Consensus 741 ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~ 815 (913)
T KOG0495|consen 741 ILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--H 815 (913)
T ss_pred HHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc--C
Confidence 777776643 334456666777777777777777776666654 23345667777777777777777777777654 3
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCCccceEEEcC
Q 046775 567 NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDNKLKKEPGMSWIEVKD 646 (771)
Q Consensus 567 ~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~ 646 (771)
|+.+.-+....+....+++.|..-+++++..+|++..+|..+-..+...|.-++-.+|++....... .-|-.|+-+..
T Consensus 816 dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP--~hG~~W~avSK 893 (913)
T KOG0495|consen 816 DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEP--THGELWQAVSK 893 (913)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCC--CCCcHHHHHhh
Confidence 4444555555666677888888888888888888888888888888888888888888877665542 24777876654
Q ss_pred EE
Q 046775 647 KV 648 (771)
Q Consensus 647 ~~ 648 (771)
.|
T Consensus 894 ~i 895 (913)
T KOG0495|consen 894 DI 895 (913)
T ss_pred hH
Confidence 44
No 31
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.61 E-value=1.3e-11 Score=133.07 Aligned_cols=590 Identities=12% Similarity=0.046 Sum_probs=314.5
Q ss_pred HHHHHHHHhCCCCChhhHHHHHHHHHcCCChHHHHHHHhcCCCCC----cchHHHHHHHHHhCCChhHHHHHHHHhHHCC
Q 046775 16 QVHGIVVFTGFDSDEFVANSLVVMYAKCGNFIDSRRLFDAIPERS----VVSWNSLFSCYVHCDFLEEAVCFFKEMVLSG 91 (771)
Q Consensus 16 ~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~----~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g 91 (771)
.++..+...|+.|+.++|.+||..||..|+++.|- +|.-|.-++ ...++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 35667788999999999999999999999999999 888776432 334666666666666655544
Q ss_pred CCCCcchHHHHHHHHhcCCCcHH---HHHHHHHHH----HhCC-----------------CCChhhHHHHHHHHHhcCCh
Q 046775 92 IRPNEFSLSSMINACAGSGDSLL---GRKIHGYSI----KLGY-----------------DSDMFSANALVDMYAKVGNL 147 (771)
Q Consensus 92 ~~p~~~t~~~ll~~~~~~~~~~~---a~~i~~~~~----~~g~-----------------~~~~~~~~~Li~~y~~~g~~ 147 (771)
.|-+.||..|+.+|...||+.. .++.+..+. ..|+ -||. ...+....-.|-+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~illlv~eglw 155 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAILLLVLEGLW 155 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHHHHHHHHHH
Confidence 4566667777777776666543 222111111 1111 0111 1112222222333
Q ss_pred hHHHHHHccCC---------------------------------C-CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 046775 148 EDAVAVFKDIE---------------------------------H-PDIVSWNAVIAGCVLHEHNDWALKLFQQMKSSEI 193 (771)
Q Consensus 148 ~~A~~~f~~~~---------------------------------~-~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~ 193 (771)
+.+.++...+| + ++..++.+.+..-.-+|+.+.|..++.+|++.|+
T Consensus 156 aqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf 235 (1088)
T KOG4318|consen 156 AQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF 235 (1088)
T ss_pred HHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence 33334333333 1 5556666666666666777777777777777776
Q ss_pred CCChhhHHHHHHHhhcCCcHHHHHHHHHHHHHccCCCChhHHHHHHHhhhcCCChHHHHHHhhhCCCCCeehHHHHHHHH
Q 046775 194 NPNMFTYTSALKACAGMELKELGRQLHCSLIKMEIKSDPIVGVGLVDMYAKCGSMDEARMIFHLMPEKNLIAWNIVISGH 273 (771)
Q Consensus 194 ~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~ 273 (771)
+.+..-|-.+|-+ .++......+..-|...|+.|+..++.-.+-...+.|....+....+.-.--....+..+..+.
T Consensus 236 pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~ 312 (1088)
T KOG4318|consen 236 PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGL 312 (1088)
T ss_pred Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhccc
Confidence 6666655555543 5566666666666666677776666665555444444322221111000000011122222221
Q ss_pred HhC-----CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCChhHHHHHHHHHHHhcC---CCchHHHhHHHHHHHh
Q 046775 274 LQN-----GGDMEAASLFPWMYREGVGFDQTTLSTVLKSVASFQAIGVCKQVHALSVKTAF---ESDDYIVNSLIDAYGK 345 (771)
Q Consensus 274 ~~~-----g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~---~~~~~~~~~Li~~y~k 345 (771)
..+ ....-.+..+++..-.|+......|..... ....|.-+...++-+.+...-. ..++..+.+++.-|.+
T Consensus 313 ~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFr 391 (1088)
T KOG4318|consen 313 LANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFR 391 (1088)
T ss_pred HhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHH
Confidence 111 111112222233233344333333322222 2224555555565555543222 1122333333433332
Q ss_pred cCC------HH----------------HHHHHHHhcC----------------CCceecH-----------HHHHHHHHH
Q 046775 346 CGH------VE----------------DAVKIFKESS----------------AVDLVAC-----------TSMITAYAQ 376 (771)
Q Consensus 346 ~g~------~~----------------~A~~~f~~~~----------------~~~~~~~-----------~~li~~~~~ 376 (771)
.-+ +. ...+...... .+....| +.++..++.
T Consensus 392 r~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~s 471 (1088)
T KOG4318|consen 392 RIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNS 471 (1088)
T ss_pred HHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHH
Confidence 211 01 1111111000 0122222 223333444
Q ss_pred cCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcCCHHHHH
Q 046775 377 FGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKF--GFMSDTFAGNSLVNMYAKCGSIDDAD 454 (771)
Q Consensus 377 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~--g~~~~~~~~~~Li~~y~k~g~~~~A~ 454 (771)
.-+..+++..-...... .-| ..|..++.-|.....++.|..+.+++... .+..|...++.+.+...+.+...++.
T Consensus 472 e~n~lK~l~~~ekye~~-lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~ 548 (1088)
T KOG4318|consen 472 EYNKLKILCDEEKYEDL-LFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLS 548 (1088)
T ss_pred HHHHHHHHHHHHHHHHH-Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHH
Confidence 33444444322222211 111 45788888888888888888888877433 34567778889999999999999999
Q ss_pred HHHhhCCC-----CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC------------------------------C
Q 046775 455 RAFSEIPD-----RG-IVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVL------------------------------P 498 (771)
Q Consensus 455 ~~f~~~~~-----~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~------------------------------p 498 (771)
.++.++.+ ++ ..+.--|.++-+..|+.+..-++++-....|+. |
T Consensus 549 tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e~~~qkyk~ 628 (1088)
T KOG4318|consen 549 TILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQEAPEPEEQKYKP 628 (1088)
T ss_pred HHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhhhcchHHHHHhcC
Confidence 99988873 22 223444566667777777777777666555432 2
Q ss_pred CHHHHHHHHHHH---------------------hccCcHHHHHHHHHHHHHhhCCC---------------C--------
Q 046775 499 NHITLVSVLCAC---------------------NHAGLVAEAKHHFESMEKKFGIQ---------------P-------- 534 (771)
Q Consensus 499 d~~t~~~ll~a~---------------------~~~g~~~~a~~~~~~m~~~~~i~---------------p-------- 534 (771)
.....-.+.+.. .+.|.+.++.++.+ ..|+. |
T Consensus 629 ~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~e----tpG~r~r~~RDr~~de~e~~~lEll~elt 704 (1088)
T KOG4318|consen 629 YPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITE----TPGVRCRNGRDRDTDEGEIVPLELLLELT 704 (1088)
T ss_pred ChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccc----cCcccccCCCccccccCccccHHHHHHHH
Confidence 111112222221 11222222222111 11111 0
Q ss_pred -CcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCc---hhHHH
Q 046775 535 -MQEHYACMIDILGRAGKFQEAMELVDTMPFQANASVWGALLGAARIYK---NVEVGQHAAEMLFAIEPEKS---STHVL 607 (771)
Q Consensus 535 -~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~---~~~~a~~~~~~~~~l~p~~~---~~~~~ 607 (771)
+..+..-+...|.++|+++.|..++.++++-|+.....-|+...+.+. |+.++....+++-++.|..+ ..|.-
T Consensus 705 ~~lg~~dRLL~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~ 784 (1088)
T KOG4318|consen 705 HELGKNDRLLQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEG 784 (1088)
T ss_pred hHhHHHHHHHHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhh
Confidence 011223466789999999999999999999999998889999888775 56677777778877765433 33333
Q ss_pred HHHHHHhcCCch-hHHHHHHHHHhCC
Q 046775 608 LSNIYASAGMWD-NVAKVRRFMKDNK 632 (771)
Q Consensus 608 l~~~y~~~g~~~-~a~~~~~~m~~~g 632 (771)
-+ ..+.+++.. -|.+.+...++..
T Consensus 785 ~a-~~a~q~~qkkaAkk~f~r~eeq~ 809 (1088)
T KOG4318|consen 785 YA-FFATQTEQKKAAKKCFERLEEQL 809 (1088)
T ss_pred hH-HHHhhHHHHHHHHHHHHHHHHcc
Confidence 33 334444444 6777788887774
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.56 E-value=1.1e-09 Score=119.26 Aligned_cols=311 Identities=13% Similarity=0.098 Sum_probs=145.8
Q ss_pred CCchhHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCChHHHHHHHhcC---CCCCcchHHHHHHHHHhCCChhHHHHHHH
Q 046775 9 KDLFLGLQVHGIVVFTGFDSDEFVANSLVVMYAKCGNFIDSRRLFDAI---PERSVVSWNSLFSCYVHCDFLEEAVCFFK 85 (771)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~---~~~~~~~~n~li~~~~~~g~~~~A~~l~~ 85 (771)
|++..|..+...+++..+. +...|-+|-..|-..|+.+++...+-.. .+.|..-|-.+-.-..+.|++.+|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 5555555555555554432 3344555555566666655555544322 22344455555555555566666666665
Q ss_pred HhHHCCCCCCcchHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCCChhhHH----HHHHHHHhcCChhHHHHHHccCCC--
Q 046775 86 EMVLSGIRPNEFSLSSMINACAGSGDSLLGRKIHGYSIKLGYDSDMFSAN----ALVDMYAKVGNLEDAVAVFKDIEH-- 159 (771)
Q Consensus 86 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~----~Li~~y~~~g~~~~A~~~f~~~~~-- 159 (771)
+..+.. +++...+---...|-+.|+...|..-+.++.....+.|..-.- ..+..|...++-+.|.+.++....
T Consensus 232 rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 232 RAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 555432 2222222233344455555555555555555554222221111 123334444444555555554432
Q ss_pred ---CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChh----------------------hHH----HHHHHhhcC
Q 046775 160 ---PDIVSWNAVIAGCVLHEHNDWALKLFQQMKSSEINPNMF----------------------TYT----SALKACAGM 210 (771)
Q Consensus 160 ---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----------------------t~~----~ll~a~~~~ 210 (771)
-+...+|.++..|.+...++.|+.....+......+|.. .|. -+.-+..+.
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L 390 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHL 390 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcc
Confidence 122345566666666666666666655555411111111 111 111122333
Q ss_pred CcHHHHHHHHHHHHHcc--CCCChhHHHHHHHhhhcCCChHHHHHHhhhCCC----CCeehHHHHHHHHHhCCChhHHHH
Q 046775 211 ELKELGRQLHCSLIKME--IKSDPIVGVGLVDMYAKCGSMDEARMIFHLMPE----KNLIAWNIVISGHLQNGGDMEAAS 284 (771)
Q Consensus 211 ~~~~~a~~l~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~ 284 (771)
+..+....+........ +..++..+.-+.++|...|.+.+|.++|..+.. .+...|-.+...|...|..++|.+
T Consensus 391 ~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e 470 (895)
T KOG2076|consen 391 KERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIE 470 (895)
T ss_pred cccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHH
Confidence 44444444444444444 222344555555555556666666665555543 234455555555555566666665
Q ss_pred HHHHHHHCCCCCCHh-hHHHHHHHHhccCChhHHHHHHHH
Q 046775 285 LFPWMYREGVGFDQT-TLSTVLKSVASFQAIGVCKQVHAL 323 (771)
Q Consensus 285 ~~~~m~~~g~~pd~~-t~~~ll~a~~~~~~~~~a~~i~~~ 323 (771)
.|.+.+.. .|+.. .-.++-..+...|+.++|.+++..
T Consensus 471 ~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 471 FYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred HHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 55555543 22221 122222333444555555554444
No 33
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.53 E-value=5.4e-11 Score=128.33 Aligned_cols=533 Identities=12% Similarity=0.042 Sum_probs=273.3
Q ss_pred HHHHHhHHCCCCCCcchHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHccCCCCC
Q 046775 82 CFFKEMVLSGIRPNEFSLSSMINACAGSGDSLLGRKIHGYSIKLGYDSDMFSANALVDMYAKVGNLEDAVAVFKDIEHPD 161 (771)
Q Consensus 82 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~ 161 (771)
.++-.|...|+.|+.+||.++|..|+..|+.+.|- ++..|.-..++.+..+++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 46677788888888888888888888888888888 8888888777778888888888888888877665 577
Q ss_pred cccHHHHHHHHHhCCChhH---HHHHHHHHH----hCCCCCChhhHHHHHHHhhcCC-c------HHHHHHHHHHHHHcc
Q 046775 162 IVSWNAVIAGCVLHEHNDW---ALKLFQQMK----SSEINPNMFTYTSALKACAGME-L------KELGRQLHCSLIKME 227 (771)
Q Consensus 162 ~~~~n~li~~~~~~g~~~~---A~~l~~~m~----~~g~~p~~~t~~~ll~a~~~~~-~------~~~a~~l~~~~~~~g 227 (771)
..+|+.|..+|.++|+... ..+.+.... ..|+..-..-|-..+.+|-..- + ...-+.+++..++.+
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll 162 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLL 162 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888887654 222111111 1222222222222222221110 0 011122223333322
Q ss_pred C-CC-ChhHHHHH--HH-hhhcCCChHHHHHHhhhCCC-CCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhH
Q 046775 228 I-KS-DPIVGVGL--VD-MYAKCGSMDEARMIFHLMPE-KNLIAWNIVISGHLQNGGDMEAASLFPWMYREGVGFDQTTL 301 (771)
Q Consensus 228 ~-~~-~~~~~~~L--i~-~y~~~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~ 301 (771)
. .| ........ +. +-.-...+++-........+ ++..++.+.+..-..+|+.+.|..++.+|.+.|.+.+..-|
T Consensus 163 ~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyF 242 (1088)
T KOG4318|consen 163 AKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYF 242 (1088)
T ss_pred hhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccc
Confidence 1 01 00000000 11 11111122222222222222 66677777777777777777777777777777777777777
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcCCHHHHHHHHHhcCCCceecHHHHHHHHHHcCCh-
Q 046775 302 STVLKSVASFQAIGVCKQVHALSVKTAFESDDYIVNSLIDAYGKCGHVEDAVKIFKESSAVDLVACTSMITAYAQFGLG- 380 (771)
Q Consensus 302 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~- 380 (771)
..+|-+ .++......+..-|...|+.|+..++.-.+-...++|....+.+..+.-..-....+.++..|...+.+.
T Consensus 243 wpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~ 319 (1088)
T KOG4318|consen 243 WPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLR 319 (1088)
T ss_pred hhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHH
Confidence 766655 6666666777777777777777777766655555544422222111100000111122222221111111
Q ss_pred ----HHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 046775 381 ----EEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRA 456 (771)
Q Consensus 381 ----~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 456 (771)
.-.+..+.+..-.|+.-....|..... ....|.-+...++-+.+...- ...-+.-+++|. +.+.+.
T Consensus 320 ~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt----~r~s~~~V~a~~-----~~lrqy 389 (1088)
T KOG4318|consen 320 QNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPT----LRDSGQNVDAFG-----ALLRQY 389 (1088)
T ss_pred HHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCc----cccCcchHHHHH-----HHHHHH
Confidence 111122222222232222222221111 112344455555544442211 111111122221 223444
Q ss_pred HhhCCCCChh-HHHHHHHHHHH---cCChHHHHHHHHHH------------HH----CCCCC----C---HHHHHHHHHH
Q 046775 457 FSEIPDRGIV-SWSAMIGGLAQ---HGRGKEALQMFGQM------------LE----DGVLP----N---HITLVSVLCA 509 (771)
Q Consensus 457 f~~~~~~~~~-~~~~li~~~~~---~g~~~~A~~l~~~m------------~~----~g~~p----d---~~t~~~ll~a 509 (771)
|.+...+... .++ .-.+... .....+..++.... .. +-..| . ...-..++.+
T Consensus 390 Frr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~ 468 (1088)
T KOG4318|consen 390 FRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLT 468 (1088)
T ss_pred HHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHH
Confidence 4444433221 111 1111111 11111111111111 10 00111 0 0122344455
Q ss_pred HhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCC-----CCCCHhHHHHHHHHHHhcCCH
Q 046775 510 CNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMP-----FQANASVWGALLGAARIYKNV 584 (771)
Q Consensus 510 ~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~-----~~p~~~~~~~ll~a~~~~~~~ 584 (771)
|...-+..+++..-+... ++-+ | ..|..||+.+.+-.++++|..+.++.. +.-|..-+..+.....+++.+
T Consensus 469 l~se~n~lK~l~~~ekye-~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l 544 (1088)
T KOG4318|consen 469 LNSEYNKLKILCDEEKYE-DLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAIL 544 (1088)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHH
Confidence 555444455554333332 2122 2 568999999999999999999998874 222344566677777778877
Q ss_pred HHHHHHHHHHHh---cCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCCccce
Q 046775 585 EVGQHAAEMLFA---IEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDNKLKKEPGMSW 641 (771)
Q Consensus 585 ~~a~~~~~~~~~---l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~ 641 (771)
..+..+.+...+ ..|.-.....-+-|--+.+|+.+...+..+.....|+.- .|--|
T Consensus 545 ~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~ 603 (1088)
T KOG4318|consen 545 YDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLW 603 (1088)
T ss_pred HHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccce
Confidence 777777766655 234334556677788889999999999999999999865 34444
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.53 E-value=1.8e-08 Score=105.72 Aligned_cols=565 Identities=12% Similarity=0.060 Sum_probs=383.2
Q ss_pred CChHHHHHHHhcCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhcCCCcHHHHHHHH
Q 046775 44 GNFIDSRRLFDAIPER---SVVSWNSLFSCYVHCDFLEEAVCFFKEMVLSGIRPNEFSLSSMINACAGSGDSLLGRKIHG 120 (771)
Q Consensus 44 g~~~~A~~~f~~~~~~---~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~ 120 (771)
+++..|+.++....+. ++..|-+-.+.=-..|.+..|..+..+=.+. .+-+...|. .+ ++....+.|+.+..
T Consensus 265 ~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWL---ea-iRLhp~d~aK~vvA 339 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWL---EA-IRLHPPDVAKTVVA 339 (913)
T ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHH---HH-HhcCChHHHHHHHH
Confidence 4567788888877653 3445544333333345554444443322211 112222232 22 13445566777777
Q ss_pred HHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCh
Q 046775 121 YSIKLGYDSDMFSANALVDMYAKVGNLEDAVAVFKDIEH---PDIVSWNAVIAGCVLHEHNDWALKLFQQMKSSEINPNM 197 (771)
Q Consensus 121 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 197 (771)
..++.- +.++..|---.+.= .+...=.++++...+ .++..|-..+ .-...+.|.-++.+..+. -|.+
T Consensus 340 ~Avr~~-P~Sv~lW~kA~dLE---~~~~~K~RVlRKALe~iP~sv~LWKaAV----elE~~~darilL~rAvec--cp~s 409 (913)
T KOG0495|consen 340 NAVRFL-PTSVRLWLKAADLE---SDTKNKKRVLRKALEHIPRSVRLWKAAV----ELEEPEDARILLERAVEC--CPQS 409 (913)
T ss_pred HHHHhC-CCChhhhhhHHhhh---hHHHHHHHHHHHHHHhCCchHHHHHHHH----hccChHHHHHHHHHHHHh--ccch
Confidence 776653 33333333222221 122223344443332 3444565443 345666677777776653 3322
Q ss_pred hhHHHHHHHhhcCCcHHHHHHHHHHHHHccCCCChhHHHHHHHhhhcCCChHHHHHHhhhCCC--------CCeehHHHH
Q 046775 198 FTYTSALKACAGMELKELGRQLHCSLIKMEIKSDPIVGVGLVDMYAKCGSMDEARMIFHLMPE--------KNLIAWNIV 269 (771)
Q Consensus 198 ~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--------~~~~~~~~l 269 (771)
.-|.-+++++.-++.|+.++..+.+. ++.+..+|.+-...--..|..+...++.++-.. -+...|-.=
T Consensus 410 ---~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~e 485 (913)
T KOG0495|consen 410 ---MDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKE 485 (913)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHH
Confidence 23444666777778888887777653 455677776666666677888888777765321 133346665
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCC--HhhHHHHHHHHhccCChhHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcC
Q 046775 270 ISGHLQNGGDMEAASLFPWMYREGVGFD--QTTLSTVLKSVASFQAIGVCKQVHALSVKTAFESDDYIVNSLIDAYGKCG 347 (771)
Q Consensus 270 i~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g 347 (771)
...+-..|..--+-.+.+....-|+.-. ..|+...-..|.+.+.++-++.++..+++- ++.+..+|......--..|
T Consensus 486 Ae~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hg 564 (913)
T KOG0495|consen 486 AEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHG 564 (913)
T ss_pred HHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcC
Confidence 6666666777777777777666665432 457888888999999999999999998875 3667778888887777889
Q ss_pred CHHHHHHHHHhcCC---CceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHH
Q 046775 348 HVEDAVKIFKESSA---VDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVH 424 (771)
Q Consensus 348 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 424 (771)
..++-..+|++... +..+.|-.....+-..|+...|..++.+..+.. .-+...+...+..-.....++.++.++..
T Consensus 565 t~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llak 643 (913)
T KOG0495|consen 565 TRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAK 643 (913)
T ss_pred cHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 99999999988653 566788888888889999999999999988753 22556777778888888999999999998
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 046775 425 IIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPD--RG-IVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHI 501 (771)
Q Consensus 425 ~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 501 (771)
.... .++..+|.--+..---.|+.++|.+++++..+ |+ ...|-.+...+-+.++.+.|.+.|..-.+ .-|+.+
T Consensus 644 ar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~i 719 (913)
T KOG0495|consen 644 ARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSI 719 (913)
T ss_pred Hhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCc
Confidence 8764 57788888777777778999999999988763 44 34677778888888999999888876655 457776
Q ss_pred -HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHH
Q 046775 502 -TLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAMELVDTM-PFQA-NASVWGALLGA 577 (771)
Q Consensus 502 -t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a 577 (771)
-|..+..-=-+.|.+-.|+.+|+...-+ .|+ ...|-..|.+=.|+|..++|..++.+. .--| +...|..-+..
T Consensus 720 pLWllLakleEk~~~~~rAR~ildrarlk---NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~l 796 (913)
T KOG0495|consen 720 PLWLLLAKLEEKDGQLVRARSILDRARLK---NPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWL 796 (913)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHhc---CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHh
Confidence 4555555566788999999999998754 454 778999999999999999999988776 2334 44578777766
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCCccceE
Q 046775 578 ARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDNKLKKEPGMSWI 642 (771)
Q Consensus 578 ~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i 642 (771)
...++.-.....++ +.-.+|+-.....+.++....+++.|.+.+......+.. -|-.|.
T Consensus 797 e~~~~rkTks~DAL----kkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d--~GD~wa 855 (913)
T KOG0495|consen 797 EPRPQRKTKSIDAL----KKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD--NGDAWA 855 (913)
T ss_pred ccCcccchHHHHHH----HhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc--cchHHH
Confidence 65555544443333 333457778888899999999999999999877655432 355554
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.52 E-value=6.4e-10 Score=121.03 Aligned_cols=344 Identities=13% Similarity=0.106 Sum_probs=224.2
Q ss_pred CCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHccCC---CCCcccHHHHHHHHHhCCChhHHHHHH
Q 046775 109 SGDSLLGRKIHGYSIKLGYDSDMFSANALVDMYAKVGNLEDAVAVFKDIE---HPDIVSWNAVIAGCVLHEHNDWALKLF 185 (771)
Q Consensus 109 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~---~~~~~~~n~li~~~~~~g~~~~A~~l~ 185 (771)
.|++++|..++.++++.. +.+...|-.|...|-..|+.+++...+--.. ..|..-|-.+-.-..+.|++++|.-.|
T Consensus 152 rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 377777777777777765 4455667777777777777777766553322 244566777777677777777777777
Q ss_pred HHHHhCCCCCChhhHHHHHHHhhcCCcHHHHHHHHHHHHHccCCCChhHHHH----HHHhhhcCCChHHHHHHhhhCCC-
Q 046775 186 QQMKSSEINPNMFTYTSALKACAGMELKELGRQLHCSLIKMEIKSDPIVGVG----LVDMYAKCGSMDEARMIFHLMPE- 260 (771)
Q Consensus 186 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~----Li~~y~~~g~~~~A~~~f~~m~~- 260 (771)
.+..+.. +++...+--=...|-+.|+...|..-+.++.....+.|..-.-. .+..|...++-+.|.+.++....
T Consensus 231 ~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 7766642 22222222333445666777777777777666544333322222 23445556666777777766654
Q ss_pred -C---CeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHh----------------------hH----HHHHHHHhc
Q 046775 261 -K---NLIAWNIVISGHLQNGGDMEAASLFPWMYREGVGFDQT----------------------TL----STVLKSVAS 310 (771)
Q Consensus 261 -~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~----------------------t~----~~ll~a~~~ 310 (771)
. +....|.++..|.....++.|......+......+|.. .+ .-+.-+..+
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~ 389 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH 389 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence 2 33457777788888888888887777776522111111 11 122233445
Q ss_pred cCChhHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhcCCHHHHHHHHHhcCC----CceecHHHHHHHHHHcCChHHHH
Q 046775 311 FQAIGVCKQVHALSVKTA--FESDDYIVNSLIDAYGKCGHVEDAVKIFKESSA----VDLVACTSMITAYAQFGLGEEAL 384 (771)
Q Consensus 311 ~~~~~~a~~i~~~~~~~g--~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~ 384 (771)
....+....+........ ...+...+.-+.++|...|++.+|.++|..+.. .+...|--+..+|...|..++|+
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 566666666666666666 444567788888999999999999999988764 45678888999999999999999
Q ss_pred HHHHHHhcCCCCCCH-hhHHHHHHHhhcccchHHHHHHHHHHH--------HhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 046775 385 KLYLEMQDREINPDS-FVCSSLLNACANLSAYEQGKQVHVHII--------KFGFMSDTFAGNSLVNMYAKCGSIDDADR 455 (771)
Q Consensus 385 ~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~--------~~g~~~~~~~~~~Li~~y~k~g~~~~A~~ 455 (771)
+.|...... .|+. -.-.++-+.+.++|+.++|.+.+..+. ..+.+|+..+.-...++|.+.|+.++=..
T Consensus 470 e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 470 EFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 999888763 4543 334455556678889999888888743 34456677777777888888888776444
Q ss_pred H
Q 046775 456 A 456 (771)
Q Consensus 456 ~ 456 (771)
+
T Consensus 548 t 548 (895)
T KOG2076|consen 548 T 548 (895)
T ss_pred H
Confidence 3
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.52 E-value=1e-11 Score=123.73 Aligned_cols=271 Identities=13% Similarity=0.062 Sum_probs=198.6
Q ss_pred HHHhcCCHHHHHHHHHhcCCCceecHHH-----HHHHHHHcC-ChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccch
Q 046775 342 AYGKCGHVEDAVKIFKESSAVDLVACTS-----MITAYAQFG-LGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAY 415 (771)
Q Consensus 342 ~y~k~g~~~~A~~~f~~~~~~~~~~~~~-----li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 415 (771)
-|.+.|+++.|.++++-...+|..+-++ -.--|.+.| ++..|-+.-+...... +-|....+.--......|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 4678888888888887766655443322 122233433 4555555555443321 22222222222223346889
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 046775 416 EQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIP---DRGIVSWSAMIGGLAQHGRGKEALQMFGQML 492 (771)
Q Consensus 416 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 492 (771)
++|...+.++.+..-.-...+|| +.-.|.+.|++++|++.|-.+. ..++...-.+.+.|....+..+|++++-+..
T Consensus 507 dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 99999999888765333333333 3445788999999999998764 5566677778889999999999999998877
Q ss_pred HCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC-CcchHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHhH
Q 046775 493 EDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQP-MQEHYACMIDILGRAGKFQEAMELVDTMP-FQANASV 570 (771)
Q Consensus 493 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p~~~~ 570 (771)
.. ++.|...+.-|...|-+.|+-.+|.+++..- |..-| +.++...+..-|....-+++|+.+|++.. ++|+.+-
T Consensus 586 sl-ip~dp~ilskl~dlydqegdksqafq~~yds---yryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~k 661 (840)
T KOG2003|consen 586 SL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDS---YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSK 661 (840)
T ss_pred cc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhc---ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHH
Confidence 73 3445557777888999999999999887653 34344 58888888889999999999999999985 8999999
Q ss_pred HHHHHHHH-HhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCc
Q 046775 571 WGALLGAA-RIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMW 618 (771)
Q Consensus 571 ~~~ll~a~-~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 618 (771)
|..++..| |+.||+..|...++.+-+.-|+|-..+-.|..+....|.-
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 99999988 6689999999999999999999999999999988887764
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.51 E-value=1e-13 Score=142.22 Aligned_cols=253 Identities=15% Similarity=0.142 Sum_probs=110.4
Q ss_pred HHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHH-HhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 046775 371 ITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLN-ACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGS 449 (771)
Q Consensus 371 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~ 449 (771)
...+.+.|++++|++++.+.......|+...|-.++. .+...++.+.|.+.+..+...+ +.++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 3445556666666666644433322344444443333 3444566777777777666654 3355566677776 67888
Q ss_pred HHHHHHHHhhCC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 046775 450 IDDADRAFSEIP--DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDG-VLPNHITLVSVLCACNHAGLVAEAKHHFESM 526 (771)
Q Consensus 450 ~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 526 (771)
+++|.+++...- .++...|..++..+...|+++++.+++++..... .++|...|..+...+.+.|+.++|.+.+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888877654 3456677888888889999999999999877643 2345556777777888899999999999998
Q ss_pred HHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 046775 527 EKKFGIQPM-QEHYACMIDILGRAGKFQEAMELVDTMP--FQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSS 603 (771)
Q Consensus 527 ~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~--~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~ 603 (771)
.+. .|+ ......++.++...|+.+++.++++... ..+|+..|..+..++...|+.+.|...++++.+.+|+|+.
T Consensus 173 l~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 173 LEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 865 675 6678888999999999998888777662 2456678999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCchhHHHHHHHH
Q 046775 604 THVLLSNIYASAGMWDNVAKVRRFM 628 (771)
Q Consensus 604 ~~~~l~~~y~~~g~~~~a~~~~~~m 628 (771)
....++.++...|+.++|.++++..
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccc
Confidence 9999999999999999999998754
No 38
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=5.7e-10 Score=113.15 Aligned_cols=212 Identities=16% Similarity=0.142 Sum_probs=169.6
Q ss_pred ccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHH
Q 046775 412 LSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIP---DRGIVSWSAMIGGLAQHGRGKEALQMF 488 (771)
Q Consensus 412 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 488 (771)
.|+.-.+.+-++.+++... .+...|--+..+|....+.++-...|+... ..|..+|..-...+.-.+++++|+.=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~-~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDP-AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCc-ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 3666677777777777653 333346677778888888899999998766 334566766666677778899999999
Q ss_pred HHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 046775 489 GQMLEDGVLPNHI-TLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTM-PFQA 566 (771)
Q Consensus 489 ~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p 566 (771)
++.+. +.|+.+ .|..+-.+..+.+.+++....|+...++| +..++.|+-....|...++++.|.+.++.. .++|
T Consensus 418 ~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 418 QKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF--PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 99998 677664 78888888889999999999999998764 445889999999999999999999999876 3555
Q ss_pred C---------HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHH
Q 046775 567 N---------ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMK 629 (771)
Q Consensus 567 ~---------~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 629 (771)
+ +.+-.+++-.-. .+|+..|+...++++++||....+|..|+.+-...|+.++|.++++.-.
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4 233333433322 3899999999999999999999999999999999999999999998643
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.38 E-value=2.2e-10 Score=123.18 Aligned_cols=273 Identities=8% Similarity=0.020 Sum_probs=192.0
Q ss_pred cCCHHHHHHHHHhcCCC--ceecHHHH-HHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHH--HHHHHhhcccchHHHHH
Q 046775 346 CGHVEDAVKIFKESSAV--DLVACTSM-ITAYAQFGLGEEALKLYLEMQDREINPDSFVCS--SLLNACANLSAYEQGKQ 420 (771)
Q Consensus 346 ~g~~~~A~~~f~~~~~~--~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~ 420 (771)
.|+++.|++.....++. ++..+..+ .....+.|++++|.+.|.++.+ ..|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57888888777765542 12222222 2333678888888888888875 355554333 23456677888888888
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh-----------hHHHHHHHHHHHcCChHHHHHHHH
Q 046775 421 VHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPDRGI-----------VSWSAMIGGLAQHGRGKEALQMFG 489 (771)
Q Consensus 421 i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~l~~ 489 (771)
.++.+.+.. |.++.+...+...|.+.|++++|.+++..+.+... .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888887776 66778888888888888999888888887774322 133344444444445566666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH
Q 046775 490 QMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTM-PFQANA 568 (771)
Q Consensus 490 ~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~ 568 (771)
.+-.. .+.+......+..++...|+.++|.+.+++..+. .|+.... ++......|+.+++.+.+++. ...|+.
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 65442 3446667788888899999999999998887643 4444211 222223458888988888877 355654
Q ss_pred h-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHH
Q 046775 569 S-VWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFM 628 (771)
Q Consensus 569 ~-~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 628 (771)
. ...++...|...++.+.|+..++++++.+|+ ...|..|+.++.+.|+.++|...++.-
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-AYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4 6777778899999999999999999999994 566889999999999999999888754
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.38 E-value=2.9e-10 Score=122.17 Aligned_cols=215 Identities=13% Similarity=0.046 Sum_probs=101.9
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC---CceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHh-------hHHHHHHHh
Q 046775 340 IDAYGKCGHVEDAVKIFKESSA---VDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSF-------VCSSLLNAC 409 (771)
Q Consensus 340 i~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------t~~~ll~a~ 409 (771)
...+...|+.+.|...+++..+ .+......+...|.+.|++++|++++..+.+.+..++.. +|..++...
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777777766543 344556667777777777888887777777655432221 111222221
Q ss_pred hcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 046775 410 ANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPDRGIVSWSAMIGGLAQHGRGKEALQMFG 489 (771)
Q Consensus 410 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 489 (771)
....+.+...+++..+-+. .+.++.+...+...+.+.|+.++|.+++++..+.....--.++.+....++.+++++..+
T Consensus 240 ~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e 318 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLR 318 (398)
T ss_pred HHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHH
Confidence 1222222222222222111 133444444555555555555555555544432211111112222233345555555555
Q ss_pred HHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHH
Q 046775 490 QMLEDGVLPNHI-TLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVD 560 (771)
Q Consensus 490 ~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~ 560 (771)
+..+ -.||.. .+..+...|.+.|++++|.++|+...+ ..|+...|..+..++.+.|+.++|.+.++
T Consensus 319 ~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~---~~P~~~~~~~La~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 319 QQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK---QRPDAYDYAWLADALDRLHKPEEAAAMRR 385 (398)
T ss_pred HHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5444 233332 344444455555555555555554442 24444444444455555555544444444
No 41
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.37 E-value=3.1e-09 Score=106.41 Aligned_cols=273 Identities=14% Similarity=0.167 Sum_probs=185.9
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHhh--HHHHHHHHhccCChhHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcCCH
Q 046775 272 GHLQNGGDMEAASLFPWMYREGVGFDQTT--LSTVLKSVASFQAIGVCKQVHALSVKTAFESDDYIVNSLIDAYGKCGHV 349 (771)
Q Consensus 272 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t--~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~ 349 (771)
.|.++|+++.|+++++-+....-+.-+.. -..+|.-.....++..+.+.-+..+... .-+....+.-.+.-...|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 46677888888887777665433222222 2223333333455666666655554322 11111111112233457899
Q ss_pred HHHHHHHHhcCCCceecHHHHHH---HHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHH
Q 046775 350 EDAVKIFKESSAVDLVACTSMIT---AYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHII 426 (771)
Q Consensus 350 ~~A~~~f~~~~~~~~~~~~~li~---~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 426 (771)
++|.+.+++....|...-.+|.. .+-..|+.++|++.|-++..- +..+...+..+.+.|..+.+..+|.+++.++.
T Consensus 507 dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 99999999988877665444433 466789999999999887642 34456677788888888888888888887765
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhC-C--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 046775 427 KFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEI-P--DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITL 503 (771)
Q Consensus 427 ~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~-~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 503 (771)
.. ++.|+.+.+.|.+.|-+.|+-..|.+.+-.- . .-|+.+..-|..-|.....+++|+.+|++... +.|+.+-|
T Consensus 586 sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kw 662 (840)
T KOG2003|consen 586 SL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKW 662 (840)
T ss_pred cc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHH
Confidence 43 5778999999999999999999988765432 2 44555555566777778888899999998877 88999988
Q ss_pred HHHHHHH-hccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCC
Q 046775 504 VSVLCAC-NHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGK 551 (771)
Q Consensus 504 ~~ll~a~-~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~ 551 (771)
-.++..| .+.|.++.|..+++....+ ++.+.+....+|.+.+..|.
T Consensus 663 qlmiasc~rrsgnyqka~d~yk~~hrk--fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 663 QLMIASCFRRSGNYQKAFDLYKDIHRK--FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHh--CccchHHHHHHHHHhccccc
Confidence 8777665 4578899999888888764 35566666667777666664
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=2.2e-08 Score=101.23 Aligned_cols=286 Identities=14% Similarity=0.103 Sum_probs=152.9
Q ss_pred HHHhccCChhHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcCCHHHHHHHHHhcCCCc------eecHHHHHHHHHHcCC
Q 046775 306 KSVASFQAIGVCKQVHALSVKTAFESDDYIVNSLIDAYGKCGHVEDAVKIFKESSAVD------LVACTSMITAYAQFGL 379 (771)
Q Consensus 306 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~ 379 (771)
.++......+.+.+-.......|++.+...-+....++-...+++.|+.+|+++...| ..+|+..+ |+++.+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhh
Confidence 3444445555555555666666666666555555555556666666666666655432 23343332 333322
Q ss_pred hHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 046775 380 GEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSE 459 (771)
Q Consensus 380 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 459 (771)
.. +..+-+-...--+-.+.|...+.+-|+-.+..++|...|+++.+.+ +....+|+.+..-|....+...|.+-++.
T Consensus 313 sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 313 SK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 11 1111111110012223344455555555566666666666666655 44555666666666666666666666664
Q ss_pred CC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC
Q 046775 460 IP---DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNH-ITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM 535 (771)
Q Consensus 460 ~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~ 535 (771)
.. ++|-..|-.+..+|..-+...=|+-.|++... .+|+. ..+.+|...|.+.++.++|++.|.....- | ..+
T Consensus 390 Avdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~-~-dte 465 (559)
T KOG1155|consen 390 AVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL-G-DTE 465 (559)
T ss_pred HHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc-c-ccc
Confidence 43 44556666666666666666666666666666 45543 35666666666666666666666665532 1 223
Q ss_pred cchHHHHHHHHhhcCCHHHHHHHHHhCC--------CCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 046775 536 QEHYACMIDILGRAGKFQEAMELVDTMP--------FQANAS-VWGALLGAARIYKNVEVGQHAAEMLFAIEPE 600 (771)
Q Consensus 536 ~~~y~~lv~~l~r~g~~~eA~~~~~~m~--------~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 600 (771)
...|..+.+++-+-+++++|...+++-. ..|... +---|..-..+++|.++|...+.++..-+|.
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e 539 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETE 539 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCch
Confidence 3456666666666666666665554431 223222 1111344445566666666665555555443
No 43
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.35 E-value=8.4e-08 Score=97.20 Aligned_cols=479 Identities=13% Similarity=0.100 Sum_probs=341.8
Q ss_pred hcCChhHHHHHHccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhcCCcHHHHHHH
Q 046775 143 KVGNLEDAVAVFKDIEH---PDIVSWNAVIAGCVLHEHNDWALKLFQQMKSSEINPNMFTYTSALKACAGMELKELGRQL 219 (771)
Q Consensus 143 ~~g~~~~A~~~f~~~~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l 219 (771)
..+++..|+.+|++... ++...|---+..=.++.....|..++++....=.+.|..=|- -+-.--.+|++..|+++
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyK-Y~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYK-YIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHH-HHHHHHHhcccHHHHHH
Confidence 35677788888887764 667778878888888888888888888877643333433222 22233456888899999
Q ss_pred HHHHHHccCCCChhHHHHHHHhhhcCCChHHHHHHhhhCC--CCCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 046775 220 HCSLIKMEIKSDPIVGVGLVDMYAKCGSMDEARMIFHLMP--EKNLIAWNIVISGHLQNGGDMEAASLFPWMYREGVGFD 297 (771)
Q Consensus 220 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 297 (771)
|..-.. ..|+...|++.|+.-.+...++.|+.++++.. .|++.+|--...-=.++|...-|..+|....+. -.|
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~ 239 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGD 239 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhh
Confidence 988775 57899999999999999999999999998854 588888988888888889999998888877653 123
Q ss_pred HhhHHHHHHHHh----ccCChhHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhcCCHHHHHHHH--------HhcCCC--
Q 046775 298 QTTLSTVLKSVA----SFQAIGVCKQVHALSVKTAFES-DDYIVNSLIDAYGKCGHVEDAVKIF--------KESSAV-- 362 (771)
Q Consensus 298 ~~t~~~ll~a~~----~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~Li~~y~k~g~~~~A~~~f--------~~~~~~-- 362 (771)
...-..++.+++ .....+.++-|+..++..-... ....|..+...=-+.|+...-.... +.+...
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 333344444554 4456788888888887764222 2445555555545556544333322 223333
Q ss_pred -ceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCH-------hhHHHHHHHh---hcccchHHHHHHHHHHHHhCCC
Q 046775 363 -DLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDS-------FVCSSLLNAC---ANLSAYEQGKQVHVHIIKFGFM 431 (771)
Q Consensus 363 -~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~a~---~~~~~~~~a~~i~~~~~~~g~~ 431 (771)
|-.+|--.+..-...|+.+...++|.+... +++|-. ..|.-+=-+| ....+.+..++++...++ -+|
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIa-nvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIP 397 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIA-NVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIP 397 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHc-cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcC
Confidence 556777777777788999999999999986 466632 1222222222 346788999999999888 456
Q ss_pred CchhHHHHHHHHHH----hcCCHHHHHHHHhhCC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHH
Q 046775 432 SDTFAGNSLVNMYA----KCGSIDDADRAFSEIP--DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLP-NHITLV 504 (771)
Q Consensus 432 ~~~~~~~~Li~~y~----k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~ 504 (771)
...+++.-+--||+ ++-++..|++++.... .|-..++...|..-.+.++++....++++.++- .| |..++.
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~--~Pe~c~~W~ 475 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF--SPENCYAWS 475 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--ChHhhHHHH
Confidence 67778887777776 6789999999998765 566678888888889999999999999999994 45 556787
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHhHHHHHHHHHH----
Q 046775 505 SVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMP-FQANASVWGALLGAAR---- 579 (771)
Q Consensus 505 ~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p~~~~~~~ll~a~~---- 579 (771)
....-=...|+.|.|..+|+-......+......|-..||-=...|.++.|..++++.- -.+..-+|-++..--.
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~ 555 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASE 555 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccc
Confidence 77777778899999999999988654333345567888888899999999999999873 4455558988875332
Q ss_pred -hcC-----------CHHHHHHHHHHHHhc----CCCCchh--HHHHHHHHHhcCCchhHHHHHHHHHh
Q 046775 580 -IYK-----------NVEVGQHAAEMLFAI----EPEKSST--HVLLSNIYASAGMWDNVAKVRRFMKD 630 (771)
Q Consensus 580 -~~~-----------~~~~a~~~~~~~~~l----~p~~~~~--~~~l~~~y~~~g~~~~a~~~~~~m~~ 630 (771)
..+ ++..|..+++++... +|..... +-..-|+-...|.-.+...|-++|-+
T Consensus 556 ~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 556 GQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred cccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence 233 567788888887653 4433222 22334566777888888888887743
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.35 E-value=9.8e-11 Score=123.53 Aligned_cols=273 Identities=15% Similarity=0.111 Sum_probs=212.3
Q ss_pred CHHHHHHHHHhcCC--Ccee-cHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC----CHhhHHHHHHHhhcccchHHHHH
Q 046775 348 HVEDAVKIFKESSA--VDLV-ACTSMITAYAQFGLGEEALKLYLEMQDREINP----DSFVCSSLLNACANLSAYEQGKQ 420 (771)
Q Consensus 348 ~~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p----~~~t~~~ll~a~~~~~~~~~a~~ 420 (771)
+..+|...|..++. .|.. ....+..+|...+++++|.++|+...+. .| +..+|.++|.-.-+.-. ..
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~--~p~rv~~meiyST~LWHLq~~v~----Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRI--EPYRVKGMEIYSTTLWHLQDEVA----LS 407 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccccchhHHHHHHHHHHhhHH----HH
Confidence 45788888888664 3443 2234567888899999999999998763 33 44678887775533221 12
Q ss_pred HH-HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 046775 421 VH-VHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPDRG---IVSWSAMIGGLAQHGRGKEALQMFGQMLEDGV 496 (771)
Q Consensus 421 i~-~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 496 (771)
.+ +.+++.. +..+.+|.++.+.|+-.++.+.|.+.|++..+.| ..+|+.+..-+.....++.|...|+..+. +
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~ 484 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--V 484 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--C
Confidence 22 2333333 6678899999999999999999999999987544 56788888888888999999999999887 6
Q ss_pred CCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHh-HHH
Q 046775 497 LPNHI-TLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAMELVDTM-PFQANAS-VWG 572 (771)
Q Consensus 497 ~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~-~~~ 572 (771)
.|.+. .|.++...|.+.++++.|.-.|++.. .|.|. .....++...+-+.|+.|+|++++++. .++|... .--
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~ 561 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY 561 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH
Confidence 77665 78899999999999999999999887 67887 566778888999999999999999987 3555322 222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 046775 573 ALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDNK 632 (771)
Q Consensus 573 ~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 632 (771)
--.......++.++|...+|++.++-|+++..|.+++.+|-..|+.+.|.+-+..|-+..
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 233344557889999999999999999999999999999999999999998887776654
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.8e-09 Score=108.96 Aligned_cols=279 Identities=14% Similarity=0.123 Sum_probs=209.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---CceecHHH-HHHHHHHcCChHHHHHHHHHHhcCCC-C-CCHhhHHHHHHHhhcc
Q 046775 339 LIDAYGKCGHVEDAVKIFKESSA---VDLVACTS-MITAYAQFGLGEEALKLYLEMQDREI-N-PDSFVCSSLLNACANL 412 (771)
Q Consensus 339 Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~-~-p~~~t~~~ll~a~~~~ 412 (771)
+..+|-.....+++..-.+.... ++..-+-+ ...++-.+.++++|+.+|+++.+... + -|..||+.+|-.-...
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 44555555566666655554433 22222222 22334456789999999999987621 1 2557888777654433
Q ss_pred cchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---hhHHHHHHHHHHHcCChHHHHHHHH
Q 046775 413 SAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPDRG---IVSWSAMIGGLAQHGRGKEALQMFG 489 (771)
Q Consensus 413 ~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~ 489 (771)
..+.---+....+-+ + -+.+...+.+-|+-.++.++|...|++..+-| ...|+.|..-|..-.+...|++-++
T Consensus 313 skLs~LA~~v~~idK--y--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 313 SKLSYLAQNVSNIDK--Y--RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred HHHHHHHHHHHHhcc--C--CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 333222222222222 2 24456677888999999999999999987544 5789999999999999999999999
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhCC--CC
Q 046775 490 QMLEDGVLP-NHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAMELVDTMP--FQ 565 (771)
Q Consensus 490 ~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~--~~ 565 (771)
+.++ +.| |...|-++..+|.-.++..=|+-+|++.. ..+|+ ...|.+|.+.|.+.++++||++-+++.- -+
T Consensus 389 rAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 389 RAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred HHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH---hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 9999 556 56699999999999999999999999987 44665 7899999999999999999999999874 23
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh-------cCCCCchhHHHHHHHHHhcCCchhHHHHHH
Q 046775 566 ANASVWGALLGAARIYKNVEVGQHAAEMLFA-------IEPEKSSTHVLLSNIYASAGMWDNVAKVRR 626 (771)
Q Consensus 566 p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~-------l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 626 (771)
.+..++..|...+...++.+.|...+++-++ .+|+-..+-.-|++-+.+.++|++|...-.
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 3457888999999999999999999999988 455555667779999999999999988654
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=2e-10 Score=121.25 Aligned_cols=244 Identities=13% Similarity=0.101 Sum_probs=196.5
Q ss_pred ChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCHHH-HHH
Q 046775 379 LGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKFG--FMSDTFAGNSLVNMYAKCGSIDD-ADR 455 (771)
Q Consensus 379 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g--~~~~~~~~~~Li~~y~k~g~~~~-A~~ 455 (771)
+.++|+.+|..... .+.-.......+-.+|..++++++++.+|+.+.+.. .-.+..+|++.+--.-+.=.+.. |..
T Consensus 334 ~~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 56899999999544 344455777788899999999999999999997753 12366778777655443222221 223
Q ss_pred HHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC
Q 046775 456 AFSEIPDRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLP-NHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQP 534 (771)
Q Consensus 456 ~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p 534 (771)
+.+. .+..+.+|-++.++|..+++.+.|++.|++.++ +.| ...+|+.+..-+.....+|.|..+|+... ..
T Consensus 413 Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~ 484 (638)
T KOG1126|consen 413 LIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GV 484 (638)
T ss_pred HHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cC
Confidence 3332 233478999999999999999999999999999 778 55689888888888999999999999854 56
Q ss_pred CcchHHHH---HHHHhhcCCHHHHHHHHHhC-CCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 046775 535 MQEHYACM---IDILGRAGKFQEAMELVDTM-PFQANAS-VWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLS 609 (771)
Q Consensus 535 ~~~~y~~l---v~~l~r~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 609 (771)
+..||+++ .-.|.|.++++.|+-.|++. .+.|... +...+...+...|..|.|.+.+++++.++|.|+-.-+..+
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 77788776 45688999999999999987 5888655 5555556777889999999999999999999999999999
Q ss_pred HHHHhcCCchhHHHHHHHHHhC
Q 046775 610 NIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 610 ~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
.++...|++++|...++++++.
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHh
Confidence 9999999999999999999875
No 47
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=1.6e-07 Score=102.88 Aligned_cols=471 Identities=15% Similarity=0.143 Sum_probs=284.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHccCCC--CCcccHHH----HHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHh
Q 046775 134 ANALVDMYAKVGNLEDAVAVFKDIEH--PDIVSWNA----VIAGCVLHEHNDWALKLFQQMKSSEINPNMFTYTSALKAC 207 (771)
Q Consensus 134 ~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~n~----li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 207 (771)
+..+.+.+.+.|-...|++.|..+.. +.++.-+. -+..|.-.-.++++++.++.|...+++-|..+...+..-|
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky 688 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKY 688 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 56677888999999999998887764 22221111 1234555667899999999999988888877776666655
Q ss_pred hcCCcHHHHHHHHHHHHHc-----------cCCCChhHHHHHHHhhhcCCChHHHHHHhhhCCC----------------
Q 046775 208 AGMELKELGRQLHCSLIKM-----------EIKSDPIVGVGLVDMYAKCGSMDEARMIFHLMPE---------------- 260 (771)
Q Consensus 208 ~~~~~~~~a~~l~~~~~~~-----------g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---------------- 260 (771)
...-..+.-.++|+..... ++.-|+.+.-..|.+.++.|++.+.+++.++-.-
T Consensus 689 ~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~ 768 (1666)
T KOG0985|consen 689 HEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLT 768 (1666)
T ss_pred HHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcccc
Confidence 5444444444555443321 2456777777889999999999998888765421
Q ss_pred ---C------------CeehH------HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHH-------------HHHH
Q 046775 261 ---K------------NLIAW------NIVISGHLQNGGDMEAASLFPWMYREGVGFDQTTLS-------------TVLK 306 (771)
Q Consensus 261 ---~------------~~~~~------~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~-------------~ll~ 306 (771)
| |.+.| -..|..|++.=++...-.+...++.- ..+....- -+..
T Consensus 769 DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~--dC~E~~ik~Li~~v~gq~~~deLv~ 846 (1666)
T KOG0985|consen 769 DQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDV--DCSEDFIKNLILSVRGQFPVDELVE 846 (1666)
T ss_pred ccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcC--CCcHHHHHHHHHHHhccCChHHHHH
Confidence 1 11111 12345555544443333333332221 11221111 2223
Q ss_pred HHhccCChhHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcCCHHH-----------------------------------
Q 046775 307 SVASFQAIGVCKQVHALSVKTAFESDDYIVNSLIDAYGKCGHVED----------------------------------- 351 (771)
Q Consensus 307 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~----------------------------------- 351 (771)
-+-+.+++..-...++..+..| ..|+.++|+|...|...++-.+
T Consensus 847 EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqc 925 (1666)
T KOG0985|consen 847 EVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQC 925 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCC
Confidence 3344445555555555555566 4566777777766654432111
Q ss_pred -----------------------------HHHHHH-----------h-----cC-CCceecHHHHHHHHHHcCChHHHHH
Q 046775 352 -----------------------------AVKIFK-----------E-----SS-AVDLVACTSMITAYAQFGLGEEALK 385 (771)
Q Consensus 352 -----------------------------A~~~f~-----------~-----~~-~~~~~~~~~li~~~~~~g~~~~A~~ 385 (771)
-.+++. + ++ ..|+..-+.-+.++...+.+.+-++
T Consensus 926 D~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIE 1005 (1666)
T KOG0985|consen 926 DLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIE 1005 (1666)
T ss_pred cHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHH
Confidence 001110 0 00 0222223344556666666777777
Q ss_pred HHHHHhcCCCCCCHhh----HHHHHHH----------------------------hhcccchHHHHHHHHHHHHhCCCCc
Q 046775 386 LYLEMQDREINPDSFV----CSSLLNA----------------------------CANLSAYEQGKQVHVHIIKFGFMSD 433 (771)
Q Consensus 386 l~~~m~~~g~~p~~~t----~~~ll~a----------------------------~~~~~~~~~a~~i~~~~~~~g~~~~ 433 (771)
++++..-. |+.++ +..+|-. +...+-+++|..++.. +..+
T Consensus 1006 LLEKIvL~---~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkk-----f~~n 1077 (1666)
T KOG0985|consen 1006 LLEKIVLD---NSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKK-----FDMN 1077 (1666)
T ss_pred HHHHHhcC---CcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHH-----hccc
Confidence 77776532 22211 1111111 1111122222222221 1223
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 046775 434 TFAGNSLVNMYAKCGSIDDADRAFSEIPDRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHA 513 (771)
Q Consensus 434 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 513 (771)
....+.||+ .-+++|.|.+.-++..+| ..|..+..+-.+.|...+|++-|-+. -|...|.-++.++++.
T Consensus 1078 ~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~ 1146 (1666)
T KOG0985|consen 1078 VSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRT 1146 (1666)
T ss_pred HHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhc
Confidence 333333332 235556665555555544 46999999999999999999887542 3567899999999999
Q ss_pred CcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 046775 514 GLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMPFQANASVWGALLGAARIYKNVEVGQHAAEM 593 (771)
Q Consensus 514 g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~ 593 (771)
|.+++-.+++...+++ .-+|.++ +.++-+|++.|++.|-++++. -||..-......-|...|.++.|+-.+.
T Consensus 1147 ~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~- 1218 (1666)
T KOG0985|consen 1147 GKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS- 1218 (1666)
T ss_pred CcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH-
Confidence 9999999999877766 6667665 678999999999999999886 5888888888999999999999988876
Q ss_pred HHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCCccce
Q 046775 594 LFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDNKLKKEPGMSW 641 (771)
Q Consensus 594 ~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~ 641 (771)
+.+.|..|+..+...|.+..|..--++..+-..-|+.+.+.
T Consensus 1219 -------~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaC 1259 (1666)
T KOG0985|consen 1219 -------NVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFAC 1259 (1666)
T ss_pred -------HhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Confidence 55677788888888888887766555444433333333333
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.32 E-value=8.6e-10 Score=119.22 Aligned_cols=289 Identities=12% Similarity=-0.003 Sum_probs=133.5
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhh-HHHHHHHHhccCChhHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcCCHHHHHH
Q 046775 276 NGGDMEAASLFPWMYREGVGFDQTT-LSTVLKSVASFQAIGVCKQVHALSVKTAFESDDYIVNSLIDAYGKCGHVEDAVK 354 (771)
Q Consensus 276 ~g~~~~A~~~~~~m~~~g~~pd~~t-~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~ 354 (771)
.|+++.|.+.+.+..+. .|++.. +...-.+....|+.+.+.+.+..+.+..-.+...+.......+...|+++.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 45555555555444333 122211 112222333334444444444444333212222233334555556666666666
Q ss_pred HHHhcCC---CceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCC
Q 046775 355 IFKESSA---VDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFM 431 (771)
Q Consensus 355 ~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~ 431 (771)
.++.+.+ .+...+..+...|.+.|++++|.+++..+.+.++.+.......-..+
T Consensus 175 ~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a----------------------- 231 (409)
T TIGR00540 175 GVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKA----------------------- 231 (409)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-----------------------
Confidence 6655443 23344555666666666666666666666655432211110100011
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH---HH
Q 046775 432 SDTFAGNSLVNMYAKCGSIDDADRAFSEIPD---RGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITL---VS 505 (771)
Q Consensus 432 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~---~~ 505 (771)
+..+++.-......+...+.++..+. .+...+..+...+...|+.++|++.+++..+. .||.... ..
T Consensus 232 -----~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l 304 (409)
T TIGR00540 232 -----EIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLC 304 (409)
T ss_pred -----HHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHH
Confidence 01111111111122333333444432 24555555566666666666666666666552 3433311 11
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHh---CCCCCCHhHHHHHHHHHHhcC
Q 046775 506 VLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDT---MPFQANASVWGALLGAARIYK 582 (771)
Q Consensus 506 ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~---m~~~p~~~~~~~ll~a~~~~~ 582 (771)
........++.+.+.+.+++..+...-.|+.....++..++.+.|++++|.+.+++ ....|+..++..|...+...|
T Consensus 305 ~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g 384 (409)
T TIGR00540 305 LPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAG 384 (409)
T ss_pred HHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcC
Confidence 11112223555556666655554422222213344556666666666666666662 234566655556666666666
Q ss_pred CHHHHHHHHHHHHh
Q 046775 583 NVEVGQHAAEMLFA 596 (771)
Q Consensus 583 ~~~~a~~~~~~~~~ 596 (771)
+.+.|...+++.+.
T Consensus 385 ~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 385 DKAEAAAMRQDSLG 398 (409)
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666666544
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.32 E-value=1e-11 Score=127.41 Aligned_cols=211 Identities=18% Similarity=0.167 Sum_probs=89.9
Q ss_pred CChhHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcCCHHHHHHHHHhcC--CCceecHHHHHHHHHHcCChHHHHHHHHH
Q 046775 312 QAIGVCKQVHALSVKTAFESDDYIVNSLIDAYGKCGHVEDAVKIFKESS--AVDLVACTSMITAYAQFGLGEEALKLYLE 389 (771)
Q Consensus 312 ~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 389 (771)
++.+.+.+.+..+...+ +.++..+..++.. ...+++++|.+++...- .++...|..++..+.+.++++++.+++.+
T Consensus 58 ~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~ 135 (280)
T PF13429_consen 58 GDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEK 135 (280)
T ss_dssp --------------------------------------------------------------H-HHHTT-HHHHHHHHHH
T ss_pred ccccccccccccccccc-ccccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHH
Confidence 34444444444444333 2234445555555 57777777777776542 24556677777778888888888888877
Q ss_pred HhcCC-CCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCh
Q 046775 390 MQDRE-INPDSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIP---DRGI 465 (771)
Q Consensus 390 m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~ 465 (771)
..... .+++...|......+.+.|+.++|...+..+++.. |.|..+.+.++.++...|+.+++.+++.... ..|.
T Consensus 136 ~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~ 214 (280)
T PF13429_consen 136 LEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDP 214 (280)
T ss_dssp HHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSC
T ss_pred HHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHH
Confidence 66422 23455566666666777777778877777777765 4456677777777777777777666665443 3455
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 046775 466 VSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLP-NHITLVSVLCACNHAGLVAEAKHHFESME 527 (771)
Q Consensus 466 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 527 (771)
..|..+..+|...|+.++|+..|++.... .| |..+...+..++...|+.++|+++..+..
T Consensus 215 ~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 215 DLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp CHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT----------------
T ss_pred HHHHHHHHHhccccccccccccccccccc--cccccccccccccccccccccccccccccccc
Confidence 66777777777777888888887777763 34 45566677777777777777777766543
No 50
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.31 E-value=3.2e-07 Score=93.08 Aligned_cols=414 Identities=12% Similarity=0.113 Sum_probs=258.3
Q ss_pred hCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHH
Q 046775 73 HCDFLEEAVCFFKEMVLSGIRPNEFSLSSMINACAGSGDSLLGRKIHGYSIKLGYDSDMFSANALVDMYAKVGNLEDAVA 152 (771)
Q Consensus 73 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~ 152 (771)
.++++..|..+|++..... ..+...+.--+..=.+...+..|+.+++..+..-...|. .|-..+.|=-..|++..|++
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhcccHHHHH
Confidence 3556667777777776533 223444444555555667777777888777766422232 34444555556688888888
Q ss_pred HHccCC--CCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhcCCcHHHHHHHHHHHHHccC--
Q 046775 153 VFKDIE--HPDIVSWNAVIAGCVLHEHNDWALKLFQQMKSSEINPNMFTYTSALKACAGMELKELGRQLHCSLIKMEI-- 228 (771)
Q Consensus 153 ~f~~~~--~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~-- 228 (771)
+|++-. +|+...|++.|.-=.+-..++.|..+|++..- +.|+..+|.--.+---+.|+...++.++..++..--
T Consensus 163 iferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 163 IFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 887754 38888888888877777888888888887765 467877777777766777788888888877765321
Q ss_pred CCChhHHHHHHHhhhcCCChHHHHHHhhhC----CCC-CeehHHHHHHHHHhCCCh---hHHHHH-----HHHHHHCCCC
Q 046775 229 KSDPIVGVGLVDMYAKCGSMDEARMIFHLM----PEK-NLIAWNIVISGHLQNGGD---MEAASL-----FPWMYREGVG 295 (771)
Q Consensus 229 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m----~~~-~~~~~~~li~~~~~~g~~---~~A~~~-----~~~m~~~g~~ 295 (771)
..+..++.+....-.++...+.|+-+|.-. |.. ....|.....-=-+.|+. ++++-- ++.+++. -+
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~-np 319 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK-NP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-CC
Confidence 112334455555555667777777776543 321 112222222222233443 333322 2233332 24
Q ss_pred CCHhhHHHHHHHHhccCChhHHHHHHHHHHHhcCCCchH-HHhHHHH--------HHHhcCCHHHHHHHHHhcC---CCc
Q 046775 296 FDQTTLSTVLKSVASFQAIGVCKQVHALSVKTAFESDDY-IVNSLID--------AYGKCGHVEDAVKIFKESS---AVD 363 (771)
Q Consensus 296 pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~-~~~~Li~--------~y~k~g~~~~A~~~f~~~~---~~~ 363 (771)
.|-.|+--.++.-...|+.+..+++++.++..-.+.... .+.-.|- .=....+++.++++|+... +..
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHk 399 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHK 399 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcc
Confidence 566677777777777788888888888777553222211 1111111 1123567777777776533 233
Q ss_pred eecHHHHHHHH----HHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHH
Q 046775 364 LVACTSMITAY----AQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNS 439 (771)
Q Consensus 364 ~~~~~~li~~~----~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~ 439 (771)
..|+.-+=-.| .++.+...|-+++-... |.-|-..+|-..+..=.+++.++..+.++...+..+ |.+..+|..
T Consensus 400 kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~k 476 (677)
T KOG1915|consen 400 KFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSK 476 (677)
T ss_pred cchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHH
Confidence 34444333333 35566777777776665 667877888877777778888888888888887776 566677777
Q ss_pred HHHHHHhcCCHHHHHHHHhhCC-CCC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 046775 440 LVNMYAKCGSIDDADRAFSEIP-DRG----IVSWSAMIGGLAQHGRGKEALQMFGQMLED 494 (771)
Q Consensus 440 Li~~y~k~g~~~~A~~~f~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 494 (771)
....-...|+.+.|+.+|+-.. +|- ...|.+.|.--...|.++.|..+++++++.
T Consensus 477 yaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 477 YAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 7777777888888888887654 332 356777777777788888888888888774
No 51
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.31 E-value=6.1e-07 Score=94.46 Aligned_cols=508 Identities=15% Similarity=0.156 Sum_probs=269.4
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHhcCCC-----CCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHH
Q 046775 30 EFVANSLVVMYAKCGNFIDSRRLFDAIPE-----RSVVSWNSLFSCYVHCDFLEEAVCFFKEMVLSGIRPNEFSLSSMIN 104 (771)
Q Consensus 30 ~~~~~~ll~~y~~~g~~~~A~~~f~~~~~-----~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 104 (771)
+.+|-.-+....+.|++..-++.|++... .-...|...|.-..+.+-++-++.+|++..+- .|.. -.--|.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~~--~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APEA--REEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHHH--HHHHHH
Confidence 34454555555666777777777765322 12335666666666677777777777776642 2322 444555
Q ss_pred HHhcCCCcHHHHHHHHHHHHhC------CCCChhhHHHHHHHHHhcCCh---hHHHHHHccCCC--CC--cccHHHHHHH
Q 046775 105 ACAGSGDSLLGRKIHGYSIKLG------YDSDMFSANALVDMYAKVGNL---EDAVAVFKDIEH--PD--IVSWNAVIAG 171 (771)
Q Consensus 105 ~~~~~~~~~~a~~i~~~~~~~g------~~~~~~~~~~Li~~y~~~g~~---~~A~~~f~~~~~--~~--~~~~n~li~~ 171 (771)
-++..+++++|.+.++.++... .+.+...|..+-+..++.-+. -....+++.+.. +| ...|++|..-
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 5666677777766666654321 134444555555555544221 122334444433 23 2357777777
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhcCCcHHHHHHHHHHHHHccCCCChhHHHHHHHhhhcCCChHHH
Q 046775 172 CVLHEHNDWALKLFQQMKSSEINPNMFTYTSALKACAGMELKELGRQLHCSLIKMEIKSDPIVGVGLVDMYAKCGSMDEA 251 (771)
Q Consensus 172 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A 251 (771)
|.+.|.++.|.++|++-.+. .....-|+.+..+|+.-.....+..+- .....+..+. ..-+++-.
T Consensus 258 YIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~e------------d~~dl~~~ 322 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEE------------DDVDLELH 322 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChh------------hhhhHHHH
Confidence 77777777777777765543 223344555555554322211111111 0000000000 00112222
Q ss_pred HHHhhhCCCC---------------CeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCChhH
Q 046775 252 RMIFHLMPEK---------------NLIAWNIVISGHLQNGGDMEAASLFPWMYREGVGFDQTTLSTVLKSVASFQAIGV 316 (771)
Q Consensus 252 ~~~f~~m~~~---------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 316 (771)
..-|+.+..+ ++..|..-+.. ..|++.+-...|.+..+. +.|-.
T Consensus 323 ~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~k------------------ 381 (835)
T KOG2047|consen 323 MARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKK------------------ 381 (835)
T ss_pred HHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCccc------------------
Confidence 2333333221 22233322222 123344444444443332 11110
Q ss_pred HHHHHHHHHHhcCCCchHHHhHHHHHHHhcCCHHHHHHHHHhcCCCcee-------cHHHHHHHHHHcCChHHHHHHHHH
Q 046775 317 CKQVHALSVKTAFESDDYIVNSLIDAYGKCGHVEDAVKIFKESSAVDLV-------ACTSMITAYAQFGLGEEALKLYLE 389 (771)
Q Consensus 317 a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~l~~~ 389 (771)
....-...+..+.+.|-..|+++.|+.+|++....+-. .|-.-...-.+..+++.|+++.+.
T Consensus 382 -----------a~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~ 450 (835)
T KOG2047|consen 382 -----------AVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRR 450 (835)
T ss_pred -----------CCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 01112234666777777777777777777776553332 233333344456667777777666
Q ss_pred HhcCC----------CCC-------CHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 046775 390 MQDRE----------INP-------DSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDD 452 (771)
Q Consensus 390 m~~~g----------~~p-------~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~ 452 (771)
....- -.| +...|+..+..--..|-++..+.+++.++...+-... +.-...-.+....-+++
T Consensus 451 A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPq-ii~NyAmfLEeh~yfee 529 (835)
T KOG2047|consen 451 ATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQ-IIINYAMFLEEHKYFEE 529 (835)
T ss_pred hhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhhHHHHH
Confidence 54211 011 1122333444444567788888888888887653322 22223333445566888
Q ss_pred HHHHHhhCC----CCCh-hHHHHHHHHHHH-c--CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--hccCcHHHHHHH
Q 046775 453 ADRAFSEIP----DRGI-VSWSAMIGGLAQ-H--GRGKEALQMFGQMLEDGVLPNHITLVSVLCAC--NHAGLVAEAKHH 522 (771)
Q Consensus 453 A~~~f~~~~----~~~~-~~~~~li~~~~~-~--g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~--~~~g~~~~a~~~ 522 (771)
+.++|++-. -|++ ..||.-+.-+.+ . -..+.|..+|++.++ |.+|...-+.-|+.|- -.-|+...|..+
T Consensus 530 sFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsi 608 (835)
T KOG2047|consen 530 SFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSI 608 (835)
T ss_pred HHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999988754 4554 478876655543 2 257899999999998 7888776544444432 123666666666
Q ss_pred HHHHH--------------------HhhCCCCCcchHHHH----------------HHHHhhcCCHHHHHHHHHhCC--C
Q 046775 523 FESME--------------------KKFGIQPMQEHYACM----------------IDILGRAGKFQEAMELVDTMP--F 564 (771)
Q Consensus 523 ~~~m~--------------------~~~~i~p~~~~y~~l----------------v~~l~r~g~~~eA~~~~~~m~--~ 564 (771)
+++.. +.||+..+.+.|.-- .++=.+.|..+.|..++.-.. .
T Consensus 609 yerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~ 688 (835)
T KOG2047|consen 609 YERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQIC 688 (835)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcC
Confidence 55443 345665555555432 344567888999998887653 3
Q ss_pred CC--CHhHHHHHHHHHHhcCCHHHHHHH
Q 046775 565 QA--NASVWGALLGAARIYKNVEVGQHA 590 (771)
Q Consensus 565 ~p--~~~~~~~ll~a~~~~~~~~~a~~~ 590 (771)
.| +...|.+.=.--..|||-+--+.+
T Consensus 689 dPr~~~~fW~twk~FEvrHGnedT~keM 716 (835)
T KOG2047|consen 689 DPRVTTEFWDTWKEFEVRHGNEDTYKEM 716 (835)
T ss_pred CCcCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 45 455888888888889995444333
No 52
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.30 E-value=4.1e-09 Score=113.98 Aligned_cols=278 Identities=10% Similarity=0.005 Sum_probs=182.4
Q ss_pred hcCCHHHHHHHHHhcCCC--ce-ecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHh--hHHHHHHHhhcccchHHHH
Q 046775 345 KCGHVEDAVKIFKESSAV--DL-VACTSMITAYAQFGLGEEALKLYLEMQDREINPDSF--VCSSLLNACANLSAYEQGK 419 (771)
Q Consensus 345 k~g~~~~A~~~f~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~~~~~~a~ 419 (771)
..|+++.|.+.+.+..+. +. ..+-.....+.+.|++++|.+.|.+..+. .|+.. ............|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 456677776666654432 21 11222234455667777777777776543 24432 2223355566677777777
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---hhHHH----HHHHHHHHcCChHHHHHHHHHHH
Q 046775 420 QVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPDRG---IVSWS----AMIGGLAQHGRGKEALQMFGQML 492 (771)
Q Consensus 420 ~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~---~~~~~----~li~~~~~~g~~~~A~~l~~~m~ 492 (771)
..++.+.+.. |.++.+...+..+|.+.|++++|.+.+....+.+ ...+. ....++...+..+++.+.+.++.
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 7777777765 5566677777778888888887777777766332 21121 11112233334444455666666
Q ss_pred HCCC---CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcch---HHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 046775 493 EDGV---LPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEH---YACMIDILGRAGKFQEAMELVDTM-PFQ 565 (771)
Q Consensus 493 ~~g~---~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~---y~~lv~~l~r~g~~~eA~~~~~~m-~~~ 565 (771)
..-. +.+...+..+...+...|+.++|.+.+++..+. .|+... .....-.....++.+++.+.+++. ...
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 5321 126677888889999999999999999999865 455432 112222223457888888888765 234
Q ss_pred CCH---hHHHHHHHHHHhcCCHHHHHHHHH--HHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHH
Q 046775 566 ANA---SVWGALLGAARIYKNVEVGQHAAE--MLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMK 629 (771)
Q Consensus 566 p~~---~~~~~ll~a~~~~~~~~~a~~~~~--~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 629 (771)
|+. ....++...|...|+.+.|...++ ..++..|++ ..+..|+.++.+.|+.++|.+++++-.
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 432 577788999999999999999999 578889955 457799999999999999999988653
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.30 E-value=4.7e-10 Score=111.62 Aligned_cols=200 Identities=13% Similarity=0.005 Sum_probs=166.7
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046775 431 MSDTFAGNSLVNMYAKCGSIDDADRAFSEIP---DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVL 507 (771)
Q Consensus 431 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 507 (771)
......+..+...|.+.|++++|...|++.. ..+...|..+...|...|++++|++.|++..+.. +.+...+..+.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 3446677888999999999999999999765 3346788889999999999999999999999853 33456777888
Q ss_pred HHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHH
Q 046775 508 CACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTM-PFQAN-ASVWGALLGAARIYKNVE 585 (771)
Q Consensus 508 ~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~~~ 585 (771)
..+...|++++|.++|++..+..........+..+...+.+.|++++|.+.+++. ...|+ ...|..+...+...|+.+
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHH
Confidence 8899999999999999998864222223556778899999999999999999886 34454 457888888889999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 046775 586 VGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 586 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
.|...+++++++.|.++..+..++.++...|++++|..+.+.+...
T Consensus 187 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 187 DARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999999999989999999999999999999999998877643
No 54
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=8.6e-09 Score=106.83 Aligned_cols=251 Identities=14% Similarity=0.085 Sum_probs=183.0
Q ss_pred HHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 046775 373 AYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDD 452 (771)
Q Consensus 373 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~ 452 (771)
-+-..+++.+.++++....+. .++....+..-|..+..+|+-.+-..+-..+++. .|..+.+|-++.-.|.-.|+.++
T Consensus 253 ~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~se 330 (611)
T KOG1173|consen 253 RLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSE 330 (611)
T ss_pred HHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHH
Confidence 344555666666666666543 2333333333344444455444443333344433 46677888888888888899999
Q ss_pred HHHHHhhCCCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 046775 453 ADRAFSEIPDRG---IVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKK 529 (771)
Q Consensus 453 A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 529 (771)
|++.|.+...-| ...|-+....|+-.|..++|+..+...-+. ++-.+--+.-+..-|...+..+.|.++|.+..
T Consensus 331 ARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~-- 407 (611)
T KOG1173|consen 331 ARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL-- 407 (611)
T ss_pred HHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH--
Confidence 999998876444 468999999999999999999999888773 23233345555667888999999999998876
Q ss_pred hCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhCC-----CCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 046775 530 FGIQPM-QEHYACMIDILGRAGKFQEAMELVDTMP-----FQAN----ASVWGALLGAARIYKNVEVGQHAAEMLFAIEP 599 (771)
Q Consensus 530 ~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~-----~~p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p 599 (771)
+|-|. +..++-+.-+....+.+.+|..+|+... ..+. ..+|+.|..+||+.+..+.|...+++++.+.|
T Consensus 408 -ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~ 486 (611)
T KOG1173|consen 408 -AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP 486 (611)
T ss_pred -hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 67776 4455555555667788889988887652 1122 23577778899999999999999999999999
Q ss_pred CCchhHHHHHHHHHhcCCchhHHHHHHHHH
Q 046775 600 EKSSTHVLLSNIYASAGMWDNVAKVRRFMK 629 (771)
Q Consensus 600 ~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 629 (771)
.|+.+|..++-+|...|+.+.|...+.+..
T Consensus 487 k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 487 KDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred CchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 999999999999999999999999987553
No 55
>PF13041 PPR_2: PPR repeat family
Probab=99.23 E-value=2.5e-11 Score=87.33 Aligned_cols=50 Identities=24% Similarity=0.492 Sum_probs=48.0
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046775 463 RGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNH 512 (771)
Q Consensus 463 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 512 (771)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 56
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.22 E-value=1.2e-08 Score=98.62 Aligned_cols=264 Identities=13% Similarity=0.091 Sum_probs=162.8
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCChhHHHHHHHHHHHhc-CCCc--hHHHhHHHHHHHhcCCHHHH
Q 046775 276 NGGDMEAASLFPWMYREGVGFDQTTLSTVLKSVASFQAIGVCKQVHALSVKTA-FESD--DYIVNSLIDAYGKCGHVEDA 352 (771)
Q Consensus 276 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g-~~~~--~~~~~~Li~~y~k~g~~~~A 352 (771)
+.++++|.++|-+|.+.. +-+..+-.++=+.+.+.|..+.|.++|+.+.++. ++.+ ....-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 567888999998888732 1122223345566777888888888888887653 2222 23445677888899999999
Q ss_pred HHHHHhcCCCce---ecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhh----HHHHHHHhhcccchHHHHHHHHHH
Q 046775 353 VKIFKESSAVDL---VACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFV----CSSLLNACANLSAYEQGKQVHVHI 425 (771)
Q Consensus 353 ~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t----~~~ll~a~~~~~~~~~a~~i~~~~ 425 (771)
+.+|..+.+.+. .+...++..|-+..++++|+++-+++...+-++..+- |.-+........+.+.|...+..+
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 999988776443 3455678889999999999999888887665555432 223333334445666777777776
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 046775 426 IKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPDRGI----VSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHI 501 (771)
Q Consensus 426 ~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 501 (771)
.+.+ +..+...-.+.+.+...|+++.|.+.++.+.+.|. .....|..+|.+.|+.++.+..+.++.+....++..
T Consensus 207 lqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~ 285 (389)
T COG2956 207 LQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAE 285 (389)
T ss_pred HhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHH
Confidence 6655 44555555666677777777777777776665443 245556667777777777777777666643223322
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHH
Q 046775 502 TLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDIL 546 (771)
Q Consensus 502 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l 546 (771)
..+-.--....-.+.|..+..+-... +|+...+..+++.-
T Consensus 286 --l~l~~lie~~~G~~~Aq~~l~~Ql~r---~Pt~~gf~rl~~~~ 325 (389)
T COG2956 286 --LMLADLIELQEGIDAAQAYLTRQLRR---KPTMRGFHRLMDYH 325 (389)
T ss_pred --HHHHHHHHHhhChHHHHHHHHHHHhh---CCcHHHHHHHHHhh
Confidence 11111111111234444444443322 56666666666554
No 57
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.1e-07 Score=94.77 Aligned_cols=306 Identities=13% Similarity=0.029 Sum_probs=215.6
Q ss_pred CCCCHhhHHHHHHHHhcc--CChhHHHHHHHHHH-HhcCCCchHHHhHHHHHHHhcCCHHHHHHHHHhcCCCceecHHHH
Q 046775 294 VGFDQTTLSTVLKSVASF--QAIGVCKQVHALSV-KTAFESDDYIVNSLIDAYGKCGHVEDAVKIFKESSAVDLVACTSM 370 (771)
Q Consensus 294 ~~pd~~t~~~ll~a~~~~--~~~~~a~~i~~~~~-~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~l 370 (771)
+.|...+...-+.+++.. ++-..+.+.+-.+. ..-++.|+....++.+.|...|+.++|...|++....|+.+..+|
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M 269 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM 269 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH
Confidence 344455555556555443 33334444444443 355788889999999999999999999999998776665554444
Q ss_pred ---HHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 046775 371 ---ITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKC 447 (771)
Q Consensus 371 ---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~ 447 (771)
.--+.+.|+.+..-.+...+.... +-....|..-+...-...+.+.|..+-+..++.. +.+...+-.-...+...
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhc
Confidence 223467788888888777776431 1111122222222334567777777777766654 33344443334566778
Q ss_pred CCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHh-ccCcHHHHHHH
Q 046775 448 GSIDDADRAFSEIP---DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVL-CACN-HAGLVAEAKHH 522 (771)
Q Consensus 448 g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll-~a~~-~~g~~~~a~~~ 522 (771)
|+.++|.-.|.... .-+..+|..++..|...|+..+|..+-+..... +..+..|+..+. ..|. ....-++|.++
T Consensus 348 ~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf 426 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKF 426 (564)
T ss_pred cchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHH
Confidence 99999999998755 356889999999999999999999998877663 333444554442 2232 22345788898
Q ss_pred HHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 046775 523 FESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAMELVDTM-PFQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPE 600 (771)
Q Consensus 523 ~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 600 (771)
+++-. .++|+ ......+..++.+.|+.+++..++++. ...||...-+.|....+..+.+..|...+..+++++|+
T Consensus 427 ~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 427 AEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 88765 56887 455677888999999999999999987 57899999999999999999999999999999999998
Q ss_pred CchhH
Q 046775 601 KSSTH 605 (771)
Q Consensus 601 ~~~~~ 605 (771)
|..+.
T Consensus 504 ~~~sl 508 (564)
T KOG1174|consen 504 SKRTL 508 (564)
T ss_pred chHHH
Confidence 86653
No 58
>PF13041 PPR_2: PPR repeat family
Probab=99.21 E-value=2.9e-11 Score=87.06 Aligned_cols=50 Identities=34% Similarity=0.617 Sum_probs=48.2
Q ss_pred CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhc
Q 046775 160 PDIVSWNAVIAGCVLHEHNDWALKLFQQMKSSEINPNMFTYTSALKACAG 209 (771)
Q Consensus 160 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 209 (771)
||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
No 59
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.19 E-value=4.1e-08 Score=98.06 Aligned_cols=281 Identities=12% Similarity=0.054 Sum_probs=193.2
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCChhHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcCCHHHHHHH
Q 046775 276 NGGDMEAASLFPWMYREGVGFDQTTLSTVLKSVASFQAIGVCKQVHALSVKTAFESDDYIVNSLIDAYGKCGHVEDAVKI 355 (771)
Q Consensus 276 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 355 (771)
.|++.+|.++..+-.+.+-.| ...|.....+....|+.+.+.+....+.+..-.++..+.-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466666666666655554333 2334445556667777888888877777765567777888888888889999988887
Q ss_pred HHh---cCCCceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCH-------hhHHHHHHHhhcccchHHHHHHHHHH
Q 046775 356 FKE---SSAVDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDS-------FVCSSLLNACANLSAYEQGKQVHVHI 425 (771)
Q Consensus 356 f~~---~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~a~~~~~~~~~a~~i~~~~ 425 (771)
.++ |..++..........|.+.|++.+.+.++..|.+.|+--|+ .++..++.-+...+..+.-+..++..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 765 55677888899999999999999999999999998865554 46777777776666666655556555
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 046775 426 IKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPDRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVS 505 (771)
Q Consensus 426 ~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 505 (771)
-+. ...++.+..+++.-+.+||+.++|.++..+..++.-..=-...-...+-++.+.-++..++-... .+-+.-.+.+
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~t 333 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLST 333 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHH
Confidence 332 24566777778888888888888888777665332111011223344556666666666555442 2222345667
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC
Q 046775 506 VLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTM 562 (771)
Q Consensus 506 ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m 562 (771)
+..-|.+.+.+.+|..+|+... ...|+.++|+-+.+.|.+.|+.++|.+..++.
T Consensus 334 LG~L~~k~~~w~kA~~~leaAl---~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 334 LGRLALKNKLWGKASEALEAAL---KLRPSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH---hcCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 7777778888888888887655 44777788888888888888877777776653
No 60
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.18 E-value=5.6e-09 Score=111.69 Aligned_cols=230 Identities=18% Similarity=0.180 Sum_probs=174.1
Q ss_pred hhHHHHHHHhhcccchHHHHHHHHHHHHh-----CC-CCch-hHHHHHHHHHHhcCCHHHHHHHHhhCC--------CCC
Q 046775 400 FVCSSLLNACANLSAYEQGKQVHVHIIKF-----GF-MSDT-FAGNSLVNMYAKCGSIDDADRAFSEIP--------DRG 464 (771)
Q Consensus 400 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-----g~-~~~~-~~~~~Li~~y~k~g~~~~A~~~f~~~~--------~~~ 464 (771)
.|...+...|...|+++.|.+++...++. |. .+.+ ...+.+..+|...+++++|..+|+++. ..+
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 46666888899999999999988877654 21 1222 233457788999999999999998875 111
Q ss_pred ---hhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC
Q 046775 465 ---IVSWSAMIGGLAQHGRGKEALQMFGQMLE-----DGVLPNHI--TLVSVLCACNHAGLVAEAKHHFESMEKKFGIQP 534 (771)
Q Consensus 465 ---~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p 534 (771)
..+++.|..+|...|++++|..++++..+ .|..+..+ -++.+...|.+.+.+++|..++....+.+.-.|
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 35788889999999999999888887764 23233332 366677789999999999999998877665233
Q ss_pred C------cchHHHHHHHHhhcCCHHHHHHHHHhCC---------CCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 046775 535 M------QEHYACMIDILGRAGKFQEAMELVDTMP---------FQAN-ASVWGALLGAARIYKNVEVGQHAAEMLFAI- 597 (771)
Q Consensus 535 ~------~~~y~~lv~~l~r~g~~~eA~~~~~~m~---------~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l- 597 (771)
. ..+|+.|..+|-..|+++||++++++.- ..+. ....+.|..+|...++.+.|...++....+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 2 4579999999999999999999998862 1233 336677888998888888888888777653
Q ss_pred ---CCC---CchhHHHHHHHHHhcCCchhHHHHHHHHH
Q 046775 598 ---EPE---KSSTHVLLSNIYASAGMWDNVAKVRRFMK 629 (771)
Q Consensus 598 ---~p~---~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 629 (771)
.|+ -..+|-.|+-+|...|++++|.++-....
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 444 45678889999999999999999876654
No 61
>PRK12370 invasion protein regulator; Provisional
Probab=99.18 E-value=5.1e-09 Score=117.68 Aligned_cols=244 Identities=14% Similarity=0.046 Sum_probs=180.1
Q ss_pred ChHHHHHHHHHHhcCCCCCCHh-hHHHHHHHhh---------cccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 046775 379 LGEEALKLYLEMQDREINPDSF-VCSSLLNACA---------NLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCG 448 (771)
Q Consensus 379 ~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~---------~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g 448 (771)
..++|+.+|++..+. .|+.. .+..+..++. ..+++++|...+..+++.. +.+...+..+..++...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 356888888888763 56543 3333333222 2345788999999988876 667888889999999999
Q ss_pred CHHHHHHHHhhCC--CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHH
Q 046775 449 SIDDADRAFSEIP--DR-GIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHI-TLVSVLCACNHAGLVAEAKHHFE 524 (771)
Q Consensus 449 ~~~~A~~~f~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~ 524 (771)
++++|...|++.. .| +...|..+...|...|++++|+..+++..+ +.|+.. .+..++.++...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 9999999999876 33 356788899999999999999999999999 567643 33344555667899999999999
Q ss_pred HHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 046775 525 SMEKKFGIQPM-QEHYACMIDILGRAGKFQEAMELVDTM-PFQANAS-VWGALLGAARIYKNVEVGQHAAEMLFAIEPEK 601 (771)
Q Consensus 525 ~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 601 (771)
+..+. ..|+ ...+..+..+|...|++++|.+.++++ +..|+.. .++.|...+...| +.+...++++++..-..
T Consensus 431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 88754 1354 455778889999999999999999887 4566554 4555545555556 47788788887754444
Q ss_pred chhHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 046775 602 SSTHVLLSNIYASAGMWDNVAKVRRFMKDNK 632 (771)
Q Consensus 602 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 632 (771)
+.....+..+|+-.|+-+.+..+ +.+.+.|
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 44444588899999999998888 5555543
No 62
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=2.8e-08 Score=103.07 Aligned_cols=470 Identities=12% Similarity=0.045 Sum_probs=230.5
Q ss_pred chhHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCChHHHHHHHh--cCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhH
Q 046775 11 LFLGLQVHGIVVFTGFDSDEFVANSLVVMYAKCGNFIDSRRLFD--AIPERSVVSWNSLFSCYVHCDFLEEAVCFFKEMV 88 (771)
Q Consensus 11 ~~~~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~--~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~ 88 (771)
...|.-+-+.+...+.+|+..- -+..+|.-.|.++.|..+.. .+...|..+.......+.+..++++|+.++..-.
T Consensus 32 y~~a~f~adkV~~l~~dp~d~~--~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~ 109 (611)
T KOG1173|consen 32 YKTALFWADKVAGLTNDPADIY--WLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGH 109 (611)
T ss_pred hhHHHHHHHHHHhccCChHHHH--HHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3344444444444443343333 36677777777777776664 3566788888888888888888888888887321
Q ss_pred HCCCCCCcchHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHccCCCCCcccHHHH
Q 046775 89 LSGIRPNEFSLSSMINACAGSGDSLLGRKIHGYSIKLGYDSDMFSANALVDMYAKVGNLEDAVAVFKDIEHPDIVSWNAV 168 (771)
Q Consensus 89 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~n~l 168 (771)
+.-+.+.|-..=. +..-....+.+.+..-.+.+ .+-.--..|....+.++|+..|.+....|+..+.++
T Consensus 110 ---~~~~~f~yy~~~~--~~~l~~n~~~~~~~~~~ess------ic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~ 178 (611)
T KOG1173|consen 110 ---VETNPFSYYEKDA--ANTLELNSAGEDLMINLESS------ICYLRGKVYVALDNREEARDKYKEALLADAKCFEAF 178 (611)
T ss_pred ---hhhcchhhcchhh--hceeccCcccccccccchhc------eeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHH
Confidence 1111111100000 00000000110000000000 111111234444566666666666555555554443
Q ss_pred HHHHHhCC-ChhHHHHHHHHHHhC-CCCCChhhHHHHHHHhh-cCCcHHHHHHHHHHHHHccCCCChhHHHHHHHhhhcC
Q 046775 169 IAGCVLHE-HNDWALKLFQQMKSS-EINPNMFTYTSALKACA-GMELKELGRQLHCSLIKMEIKSDPIVGVGLVDMYAKC 245 (771)
Q Consensus 169 i~~~~~~g-~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~-~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~ 245 (771)
..--...= -.++-..+|..+.-. -..-+....-.+..... +..+.+. ...-....-.+...++.+...-.+-+-.+
T Consensus 179 ~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~-~~r~~~~sl~~l~~~~dll~~~ad~~y~~ 257 (611)
T KOG1173|consen 179 EKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEES-LTRNEDESLIGLAENLDLLAEKADRLYYG 257 (611)
T ss_pred HHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccc-cccCchhhhhhhhhcHHHHHHHHHHHHHc
Confidence 33211110 111222222210000 00011111111111110 0000000 00000000012223333444444444455
Q ss_pred CChHHHHHHhhhCCCCCe---ehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCChhHHHHHHH
Q 046775 246 GSMDEARMIFHLMPEKNL---IAWNIVISGHLQNGGDMEAASLFPWMYREGVGFDQTTLSTVLKSVASFQAIGVCKQVHA 322 (771)
Q Consensus 246 g~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~ 322 (771)
+++.+..++++...+.|+ ..+..-|..+...|+..+-..+=.+|.+.
T Consensus 258 c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~------------------------------ 307 (611)
T KOG1173|consen 258 CRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL------------------------------ 307 (611)
T ss_pred ChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh------------------------------
Confidence 555555555555544222 23333344444444444433333333332
Q ss_pred HHHHhcCCCchHHHhHHHHHHHhcCCHHHHHHHHHhcCCCc---eecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCH
Q 046775 323 LSVKTAFESDDYIVNSLIDAYGKCGHVEDAVKIFKESSAVD---LVACTSMITAYAQFGLGEEALKLYLEMQDREINPDS 399 (771)
Q Consensus 323 ~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 399 (771)
.+..+.+|-++.--|.-.|+.++|++.|.+...-| ...|-.....|+-.|..+.|+..+...-+. ++-..
T Consensus 308 ------yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~h 380 (611)
T KOG1173|consen 308 ------YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCH 380 (611)
T ss_pred ------CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCc
Confidence 25556677777777878888899999887754433 357888888888889999988888765542 11111
Q ss_pred hhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC--C--------hhHHH
Q 046775 400 FVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPDR--G--------IVSWS 469 (771)
Q Consensus 400 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~--~--------~~~~~ 469 (771)
.-+.-+---|.+.++++.|.+.+.++.... |.|+.+.+-+.-++-..+.+.+|..+|+....+ + ..+|+
T Consensus 381 lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~ 459 (611)
T KOG1173|consen 381 LPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLN 459 (611)
T ss_pred chHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHH
Confidence 122223334667778888888888776654 667777777777777777777777777654410 0 12345
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCc
Q 046775 470 AMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQ 536 (771)
Q Consensus 470 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~ 536 (771)
.|..+|.+.+.+++|+..|++.+.. .+-|..|+.++.-.+...|.++.|..+|++.. .+.|+-
T Consensus 460 NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL---~l~p~n 522 (611)
T KOG1173|consen 460 NLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL---ALKPDN 522 (611)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH---hcCCcc
Confidence 5555556666666666666665552 12233455555555555555555555555544 444543
No 63
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.16 E-value=4.3e-08 Score=97.86 Aligned_cols=291 Identities=14% Similarity=0.094 Sum_probs=204.0
Q ss_pred CCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhcCCcHHHHHHHHHHHHHccCCCChhHHHHHHHhhhcCCChHHHHHH
Q 046775 175 HEHNDWALKLFQQMKSSEINPNMFTYTSALKACAGMELKELGRQLHCSLIKMEIKSDPIVGVGLVDMYAKCGSMDEARMI 254 (771)
Q Consensus 175 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 254 (771)
.|++..|.++..+-.+.+-.| ...|.....+.-..|+.+.+-.+..++-+..-.++..+.-+........|+.+.|+.-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 477888888777766655443 2345555566677888888888888877765566677777777778888888888877
Q ss_pred hhhCC---CCCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCChhHHHHHHHHHHHhcCCC
Q 046775 255 FHLMP---EKNLIAWNIVISGHLQNGGDMEAASLFPWMYREGVGFDQTTLSTVLKSVASFQAIGVCKQVHALSVKTAFES 331 (771)
Q Consensus 255 f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~ 331 (771)
.++.. .++..........|.+.|++.+...++.+|.+.|+--|+..- + .
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------~-----------l 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------R-----------L 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------H-----------H
Confidence 66544 367778888889999999999999999999888764443321 0 1
Q ss_pred chHHHhHHHHHHHhcCCHHHHHHHHHhcCC---CceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHH
Q 046775 332 DDYIVNSLIDAYGKCGHVEDAVKIFKESSA---VDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNA 408 (771)
Q Consensus 332 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 408 (771)
...+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++..+-.+.+..|+. ..+-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHh
Confidence 122344555544444555555556666653 34556667788888889999999998888888777772 22334
Q ss_pred hhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCChhHHHHHHHHHHHcCChHHHHH
Q 046775 409 CANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIP--DRGIVSWSAMIGGLAQHGRGKEALQ 486 (771)
Q Consensus 409 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~ 486 (771)
+.+.++.+.-.+..+.-.+.. +.++..+.+|...|.|.+.+.+|...|+... .++..+|+-+..+|.+.|+..+|.+
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHH
Confidence 566666666666655554443 4555788888888888888888888888655 5677888888888888888888888
Q ss_pred HHHHHHHCCCCCC
Q 046775 487 MFGQMLEDGVLPN 499 (771)
Q Consensus 487 l~~~m~~~g~~pd 499 (771)
.+++.+..-.+|+
T Consensus 383 ~r~e~L~~~~~~~ 395 (400)
T COG3071 383 VRREALLLTRQPN 395 (400)
T ss_pred HHHHHHHHhcCCC
Confidence 8887765434443
No 64
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=2.4e-07 Score=90.58 Aligned_cols=440 Identities=13% Similarity=0.046 Sum_probs=235.0
Q ss_pred HHHHHHhcCChhHHHHHHccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhcCCcH
Q 046775 137 LVDMYAKVGNLEDAVAVFKDIEH---PDIVSWNAVIAGCVLHEHNDWALKLFQQMKSSEINPNMFTYTSALKACAGMELK 213 (771)
Q Consensus 137 Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 213 (771)
+...|.+.|++++|..++..+.+ ++...|-.|...+.--|.+.+|..+-.... -+.-.-..+....-+.++-
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~-----k~pL~~RLlfhlahklndE 137 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDE 137 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCC-----CChHHHHHHHHHHHHhCcH
Confidence 44556667777777777765543 445556666666666677777766544321 1222233334444566666
Q ss_pred HHHHHHHHHHHHccCCCChhHHHHHHHhhhcCCChHHHHHHhhhCCC--CCeehHHHH-HHHHHhCCChhHHHHHHHHHH
Q 046775 214 ELGRQLHCSLIKMEIKSDPIVGVGLVDMYAKCGSMDEARMIFHLMPE--KNLIAWNIV-ISGHLQNGGDMEAASLFPWMY 290 (771)
Q Consensus 214 ~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~ 290 (771)
+.-...|+.+...- .-.-+|..+.--.-..++|..++.++.. |+....|.- .-+|.+..-++-+.+++.--+
T Consensus 138 k~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL 212 (557)
T KOG3785|consen 138 KRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYL 212 (557)
T ss_pred HHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 66666666654321 2223344444444567888888888765 445555543 345677777777777777665
Q ss_pred HCCCCCCHhhHHHHHHHHhccC--ChhHHHHHHHHHHHhcCCCchHHHhHHHHHHHhc-----CCHHHHHHHHHhcCCCc
Q 046775 291 REGVGFDQTTLSTVLKSVASFQ--AIGVCKQVHALSVKTAFESDDYIVNSLIDAYGKC-----GHVEDAVKIFKESSAVD 363 (771)
Q Consensus 291 ~~g~~pd~~t~~~ll~a~~~~~--~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~-----g~~~~A~~~f~~~~~~~ 363 (771)
+. -||+ |+..=+.+|.... +-..+++-...+.+.+-..-+ .+.-.++. ..-+.|.+++-.+...-
T Consensus 213 ~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~-----f~~~l~rHNLVvFrngEgALqVLP~L~~~I 284 (557)
T KOG3785|consen 213 RQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP-----FIEYLCRHNLVVFRNGEGALQVLPSLMKHI 284 (557)
T ss_pred Hh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch-----hHHHHHHcCeEEEeCCccHHHhchHHHhhC
Confidence 53 2443 3444444553322 222222222222222211101 11111221 12244444443322211
Q ss_pred eecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 046775 364 LVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNM 443 (771)
Q Consensus 364 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~ 443 (771)
+.+--.++--|.+.++..+|..+.+++.- ..|-....-.+..+- +..-
T Consensus 285 PEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aa------------------------------lGQe 332 (557)
T KOG3785|consen 285 PEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAA------------------------------LGQE 332 (557)
T ss_pred hHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHH------------------------------hhhh
Confidence 12222334446777888888887776542 234333333333221 1111
Q ss_pred HHhcCCHHHHHHHHhhCCC----CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 046775 444 YAKCGSIDDADRAFSEIPD----RG-IVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAE 518 (771)
Q Consensus 444 y~k~g~~~~A~~~f~~~~~----~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~ 518 (771)
.+....+.-|.+.|+-... -| +.--.+|.+.+.-..++++.+..++....- +..|.+--..+..|....|.+.+
T Consensus 333 ~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~e 411 (557)
T KOG3785|consen 333 TGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVE 411 (557)
T ss_pred cCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHH
Confidence 1111223334444443321 11 223445666666666677777777766664 33344444456777788888888
Q ss_pred HHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHH-HHHHHhcCCHHHHHHHHHHHHhc
Q 046775 519 AKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMPFQANASVWGAL-LGAARIYKNVEVGQHAAEMLFAI 597 (771)
Q Consensus 519 a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~l-l~a~~~~~~~~~a~~~~~~~~~l 597 (771)
|.++|-.+... .++.+..-...+...|.+.|+.+-|.+++-++.-..+..+...| .+-|.+.+.+--|-+++..+-.+
T Consensus 412 aEelf~~is~~-~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 412 AEELFIRISGP-EIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred HHHHHhhhcCh-hhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 88888776521 22222222344567788888888888888887644444444444 45899999999999999999889
Q ss_pred CCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCCc
Q 046775 598 EPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDNKLKKEPG 638 (771)
Q Consensus 598 ~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g 638 (771)
+| +|..| .|+-....-++..+-...-+..|+
T Consensus 491 DP-~pEnW---------eGKRGACaG~f~~l~~~~~~~~p~ 521 (557)
T KOG3785|consen 491 DP-TPENW---------EGKRGACAGLFRQLANHKTDPIPI 521 (557)
T ss_pred CC-Ccccc---------CCccchHHHHHHHHHcCCCCCCch
Confidence 98 55544 344445555666555444444443
No 65
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=1.8e-07 Score=95.43 Aligned_cols=400 Identities=14% Similarity=0.089 Sum_probs=196.1
Q ss_pred HHHHHHHHhCCChhHHHHHHHHhHHCCCCCC-cchHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCCC-hhhHHHHHHHHH
Q 046775 65 NSLFSCYVHCDFLEEAVCFFKEMVLSGIRPN-EFSLSSMINACAGSGDSLLGRKIHGYSIKLGYDSD-MFSANALVDMYA 142 (771)
Q Consensus 65 n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~-~~~~~~Li~~y~ 142 (771)
-..-.-|-++|.+++|+++|.+... ..|| ++-|...-.+|...|+++...+.-...++.. |+ +-.+..-.+++-
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHE 194 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHH
Confidence 3344567789999999999999987 4688 6667777777888999998888777777654 44 345666667777
Q ss_pred hcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHH---------HHhC--CCCCChhhHHHHHHHhhcCC
Q 046775 143 KVGNLEDAVAVFKDIEHPDIVSWNAVIAGCVLHEHNDWALKLFQQ---------MKSS--EINPNMFTYTSALKACAGME 211 (771)
Q Consensus 143 ~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~---------m~~~--g~~p~~~t~~~ll~a~~~~~ 211 (771)
..|++++|+.= +|-.++..++....-.--+.+++.. |... .+-|+.....+.+..+...-
T Consensus 195 ~lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~ 265 (606)
T KOG0547|consen 195 QLGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP 265 (606)
T ss_pred hhccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc
Confidence 78888877631 2334444444433333233333322 2211 24455444444443331100
Q ss_pred cHHHHHHHHHHHHHccCCCChhHHHHHHHhhhcC-CChHHHHHHhhh-------CCCCC---ee------hHHHHHHHHH
Q 046775 212 LKELGRQLHCSLIKMEIKSDPIVGVGLVDMYAKC-GSMDEARMIFHL-------MPEKN---LI------AWNIVISGHL 274 (771)
Q Consensus 212 ~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~-g~~~~A~~~f~~-------m~~~~---~~------~~~~li~~~~ 274 (771)
.. .+...+-..|...-..+-..|... ..+..|...+.+ -...+ .. +.+.-..-+.
T Consensus 266 ~~--------~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~f 337 (606)
T KOG0547|consen 266 KP--------LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHF 337 (606)
T ss_pred cc--------cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhh
Confidence 00 000000011111111111111111 011222222111 11111 00 0000011122
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCChhHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcCCHHHHHH
Q 046775 275 QNGGDMEAASLFPWMYREGVGFDQTTLSTVLKSVASFQAIGVCKQVHALSVKTAFESDDYIVNSLIDAYGKCGHVEDAVK 354 (771)
Q Consensus 275 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~ 354 (771)
-.|+...|..-|+........++. .|--+..+|....+.++..+
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~------------------------------------lyI~~a~~y~d~~~~~~~~~ 381 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNS------------------------------------LYIKRAAAYADENQSEKMWK 381 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccch------------------------------------HHHHHHHHHhhhhccHHHHH
Confidence 234555555555555443322222 13333344555555555555
Q ss_pred HHHhcC---CCceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCC-HhhHHHHHHHhhcccchHHHHHHHHHHHHhCC
Q 046775 355 IFKESS---AVDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPD-SFVCSSLLNACANLSAYEQGKQVHVHIIKFGF 430 (771)
Q Consensus 355 ~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~ 430 (771)
.|+... ..|..+|..-...+.-.+++++|..-|++.+. +.|+ ...|.-+--+..+.+.++.....|+..++. +
T Consensus 382 ~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-F 458 (606)
T KOG0547|consen 382 DFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-F 458 (606)
T ss_pred HHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C
Confidence 554432 23444444444444445555666666665554 2332 233333333334555666666666665543 4
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCC-------hhH--HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 046775 431 MSDTFAGNSLVNMYAKCGSIDDADRAFSEIP--DRG-------IVS--WSAMIGGLAQHGRGKEALQMFGQMLEDGVLPN 499 (771)
Q Consensus 431 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--~~~-------~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 499 (771)
|..+.+|+-....+...++++.|.+.|+... +|. ..+ --+++. +.-.++...|+.++++..+ +.|-
T Consensus 459 P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e--~Dpk 535 (606)
T KOG0547|consen 459 PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIE--LDPK 535 (606)
T ss_pred CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHc--cCch
Confidence 5566666666666666666666666666543 221 100 011111 1122666777777777766 4443
Q ss_pred -HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 046775 500 -HITLVSVLCACNHAGLVAEAKHHFESME 527 (771)
Q Consensus 500 -~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 527 (771)
...+.++..--.+.|+.++|+++|+...
T Consensus 536 ce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 536 CEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3466677777777777777777777654
No 66
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.10 E-value=1.2e-08 Score=104.84 Aligned_cols=211 Identities=16% Similarity=0.090 Sum_probs=152.0
Q ss_pred chHHHHHHHHHHHHhC-CCC--chhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHH
Q 046775 414 AYEQGKQVHVHIIKFG-FMS--DTFAGNSLVNMYAKCGSIDDADRAFSEIP---DRGIVSWSAMIGGLAQHGRGKEALQM 487 (771)
Q Consensus 414 ~~~~a~~i~~~~~~~g-~~~--~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l 487 (771)
..+.+..-+..++... ..+ ....+..+...|.+.|+.++|...|+... ..+...|+.+...|...|++++|++.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4455555555565432 222 24567788889999999999999998775 34578999999999999999999999
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-C-C
Q 046775 488 FGQMLEDGVLPNH-ITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTM-P-F 564 (771)
Q Consensus 488 ~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~-~ 564 (771)
|++.++ +.|+. .++..+..++...|++++|.+.|+...+. .|+.........++...++.++|.+.+++. + .
T Consensus 121 ~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 999998 66764 57888888899999999999999998754 565432222233455678899999999654 2 2
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH-------hcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 046775 565 QANASVWGALLGAARIYKNVEVGQHAAEMLF-------AIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDNKL 633 (771)
Q Consensus 565 ~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~-------~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 633 (771)
.|+...|. + .....|+...+. +++.+. ++.|+.+.+|..|+.+|...|++++|...++...+.++
T Consensus 196 ~~~~~~~~--~-~~~~lg~~~~~~-~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 196 DKEQWGWN--I-VEFYLGKISEET-LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CccccHHH--H-HHHHccCCCHHH-HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 33332332 1 222345443332 333333 56777888999999999999999999999988776553
No 67
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.05 E-value=3e-07 Score=89.12 Aligned_cols=303 Identities=14% Similarity=0.110 Sum_probs=196.6
Q ss_pred cCChhHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcCCHHHHHHHHHhcCC-Ccee------cHHHHHHHHHHcCChHHH
Q 046775 311 FQAIGVCKQVHALSVKTAFESDDYIVNSLIDAYGKCGHVEDAVKIFKESSA-VDLV------ACTSMITAYAQFGLGEEA 383 (771)
Q Consensus 311 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-~~~~------~~~~li~~~~~~g~~~~A 383 (771)
....++|...|-+|.+.. +.+..+.-+|.+.|.+.|.+|.|+++-+.+.+ ||.. ..-.+..-|...|.++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 356778888888888732 34455667888999999999999999887654 4432 233456678888999999
Q ss_pred HHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCch----hHHHHHHHHHHhcCCHHHHHHHHhh
Q 046775 384 LKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDT----FAGNSLVNMYAKCGSIDDADRAFSE 459 (771)
Q Consensus 384 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~----~~~~~Li~~y~k~g~~~~A~~~f~~ 459 (771)
..+|..+.+.+ .--.....-++..|-...++++|..+-..+.+.+-.+.. ..|.-|...+.-..+.+.|..++.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99999988754 333456777888888888999998888888777644332 2345566666667788888888887
Q ss_pred CCCCCh---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC
Q 046775 460 IPDRGI---VSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHI--TLVSVLCACNHAGLVAEAKHHFESMEKKFGIQP 534 (771)
Q Consensus 460 ~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p 534 (771)
..+.|. ..=-.+...+...|+++.|++.++...+. .|+.. +...|..+|.+.|+.+++..++.++.+. .+
T Consensus 206 Alqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ--n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~ 280 (389)
T COG2956 206 ALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ--NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NT 280 (389)
T ss_pred HHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cC
Confidence 764433 22233456677888888888888888874 45543 5666777888888888888888877754 34
Q ss_pred CcchHHHHHHHHhhcCCHHHHHHHH-HhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 046775 535 MQEHYACMIDILGRAGKFQEAMELV-DTMPFQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYA 613 (771)
Q Consensus 535 ~~~~y~~lv~~l~r~g~~~eA~~~~-~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 613 (771)
..+.-..+.+......-.++|...+ +...-+|+......|+..-. .=+
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l-------------------------------~da 329 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHL-------------------------------ADA 329 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhh-------------------------------ccc
Confidence 4444444444433333333443333 22233444443333332210 112
Q ss_pred hcCCchhHHHHHHHHHhCCCccCCccceEEEcCEEEEE
Q 046775 614 SAGMWDNVAKVRRFMKDNKLKKEPGMSWIEVKDKVYTF 651 (771)
Q Consensus 614 ~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f 651 (771)
+-|+|.+..-+.+.|....++..|.+..-.-+=+.|.|
T Consensus 330 eeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l 367 (389)
T COG2956 330 EEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTL 367 (389)
T ss_pred cccchhhhHHHHHHHHHHHHhhcCCceecccCCcceee
Confidence 34667777777788887777777765544433345555
No 68
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.03 E-value=9.3e-07 Score=93.92 Aligned_cols=437 Identities=17% Similarity=0.176 Sum_probs=207.6
Q ss_pred cCCChHHHHHHHhcCCC-CCcc-hHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhcCCCcHHHHHHH
Q 046775 42 KCGNFIDSRRLFDAIPE-RSVV-SWNSLFSCYVHCDFLEEAVCFFKEMVLSGIRPNEFSLSSMINACAGSGDSLLGRKIH 119 (771)
Q Consensus 42 ~~g~~~~A~~~f~~~~~-~~~~-~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~ 119 (771)
..|+++.|...++.... |+.. .|-.+-..-...|+..-|.+.| +..|++..++.+|
T Consensus 456 d~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercf----------------------aai~dvak~r~lh 513 (1636)
T KOG3616|consen 456 DDGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCF----------------------AAIGDVAKARFLH 513 (1636)
T ss_pred ccCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHH----------------------HHHHHHHHHHHHH
Confidence 34667777766665543 3332 4555544444455444444443 3345556666666
Q ss_pred HHHH-------HhCCC-CChhhHHHHHHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 046775 120 GYSI-------KLGYD-SDMFSANALVDMYAKVGNLEDAVAVFKDIEHPDIVSWNAVIAGCVLHEHNDWALKLFQQMKSS 191 (771)
Q Consensus 120 ~~~~-------~~g~~-~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~ 191 (771)
+... +.|-. .+-+-..+++.+.. ..+.+|..+|-+-. + -..-|..|....++++|+.+-+..
T Consensus 514 d~~eiadeas~~~ggdgt~fykvra~lail~--kkfk~ae~ifleqn--~---te~aigmy~~lhkwde~i~lae~~--- 583 (1636)
T KOG3616|consen 514 DILEIADEASIEIGGDGTDFYKVRAMLAILE--KKFKEAEMIFLEQN--A---TEEAIGMYQELHKWDEAIALAEAK--- 583 (1636)
T ss_pred HHHHHHHHHhHhhCCCCchHHHHHHHHHHHH--hhhhHHHHHHHhcc--c---HHHHHHHHHHHHhHHHHHHHHHhc---
Confidence 5442 22212 22223334444333 35777887774321 1 233455666667777777765432
Q ss_pred CCCCChhhHHHHHHHhhcCCcHHHHHHHHHHHHHccCCCChhHHHHHHHhhhcCCChHHHHHHhhh--CCCCCeehHHHH
Q 046775 192 EINPNMFTYTSALKACAGMELKELGRQLHCSLIKMEIKSDPIVGVGLVDMYAKCGSMDEARMIFHL--MPEKNLIAWNIV 269 (771)
Q Consensus 192 g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~--m~~~~~~~~~~l 269 (771)
|.+.-...-.+.++++...|+-+.|-++- .+.--.-+-|..|.+.|....|.+.-.. ....|......+
T Consensus 584 ~~p~~eklk~sy~q~l~dt~qd~ka~elk---------~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~i 654 (1636)
T KOG3616|consen 584 GHPALEKLKRSYLQALMDTGQDEKAAELK---------ESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHI 654 (1636)
T ss_pred CChHHHHHHHHHHHHHHhcCchhhhhhhc---------cccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHH
Confidence 21111112233445555555555444331 1111223456778888877776654322 112343344444
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCChhHHHHHHHHHHHhcCCCchHH-HhHHHHHHHhcCC
Q 046775 270 ISGHLQNGGDMEAASLFPWMYREGVGFDQTTLSTVLKSVASFQAIGVCKQVHALSVKTAFESDDYI-VNSLIDAYGKCGH 348 (771)
Q Consensus 270 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~-~~~Li~~y~k~g~ 348 (771)
..++.+...+++|-++|+++.. +...+..+.+...+.++.++-... ++..+.. -.+-.+-+...|.
T Consensus 655 a~alik~elydkagdlfeki~d---------~dkale~fkkgdaf~kaielarfa----fp~evv~lee~wg~hl~~~~q 721 (1636)
T KOG3616|consen 655 AAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQ 721 (1636)
T ss_pred HHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHh
Confidence 5555555556666666665532 111222222222233333322211 1111111 1122233344555
Q ss_pred HHHHHHHHHhcCCCceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHh
Q 046775 349 VEDAVKIFKESSAVDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKF 428 (771)
Q Consensus 349 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 428 (771)
++.|...|-+... .---|.+-.....+.+|+.+++.++... .-..-|..+..-|++.|+++.|.+++...
T Consensus 722 ~daainhfiea~~-----~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~--- 791 (1636)
T KOG3616|consen 722 LDAAINHFIEANC-----LIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA--- 791 (1636)
T ss_pred HHHHHHHHHHhhh-----HHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---
Confidence 6666555543211 0112334445566667777766666542 22233555566666667766666665432
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC--hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 046775 429 GFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPDRG--IVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSV 506 (771)
Q Consensus 429 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 506 (771)
..++--|+||.+.|++++|.++-.+...|. +.+|-+-..-+-.+|++.+|.+++-... .||..
T Consensus 792 ------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~a----- 856 (1636)
T KOG3616|consen 792 ------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDKA----- 856 (1636)
T ss_pred ------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchHH-----
Confidence 123445667777777777766666555443 3344444555556666666666554331 34432
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHh
Q 046775 507 LCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDT 561 (771)
Q Consensus 507 l~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~ 561 (771)
+..|-+.|+.++.+++..+-..+ .-.++--.+..-|-..|++.+|++-|-+
T Consensus 857 iqmydk~~~~ddmirlv~k~h~d----~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 857 IQMYDKHGLDDDMIRLVEKHHGD----HLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred HHHHHhhCcchHHHHHHHHhChh----hhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 33455555555555544332111 1122223344455556666666655443
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=99.02 E-value=2.9e-08 Score=111.54 Aligned_cols=210 Identities=11% Similarity=0.021 Sum_probs=162.1
Q ss_pred cchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh---------cCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCC
Q 046775 413 SAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAK---------CGSIDDADRAFSEIPD---RGIVSWSAMIGGLAQHGR 480 (771)
Q Consensus 413 ~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k---------~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~ 480 (771)
+++++|...+..+++.. +.+...+..|..+|.. .+++++|...+++..+ .+...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 45678889999988765 4455666666665542 2458899999998763 356788889889999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcc-hHHHHHHHHhhcCCHHHHHHH
Q 046775 481 GKEALQMFGQMLEDGVLPNHI-TLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQE-HYACMIDILGRAGKFQEAMEL 558 (771)
Q Consensus 481 ~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~-~y~~lv~~l~r~g~~~eA~~~ 558 (771)
+++|+..|++.++ ..|+.. .+..+..++...|++++|...+++..+ +.|+.. .+..+...+...|++++|.+.
T Consensus 354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999999 567654 677788899999999999999999884 466632 333445557778999999999
Q ss_pred HHhCC--CCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHh
Q 046775 559 VDTMP--FQANAS-VWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKD 630 (771)
Q Consensus 559 ~~~m~--~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 630 (771)
+++.- ..|+.. .+..+..++...|+.+.|+..++++....|++......|+..|...| ++|....+.+.+
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 98863 235544 45556666678999999999999999999988888888999999888 477775555544
No 70
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.00 E-value=8.2e-08 Score=95.34 Aligned_cols=198 Identities=16% Similarity=0.132 Sum_probs=99.9
Q ss_pred ecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 046775 365 VACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMY 444 (771)
Q Consensus 365 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y 444 (771)
..+..+...|...|++++|.+.|++..+.. +.+...+..+...+...|+++.|...+....+.. +.+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~----------- 98 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNN----------- 98 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCC-----------
Confidence 445556666666677777776666665431 1122333333444444444444444444444332 222
Q ss_pred HhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHH
Q 046775 445 AKCGSIDDADRAFSEIPDRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPN-HITLVSVLCACNHAGLVAEAKHHF 523 (771)
Q Consensus 445 ~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~ 523 (771)
...|..+...|...|++++|++.|++.......|. ...+..+..++...|++++|..+|
T Consensus 99 --------------------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (234)
T TIGR02521 99 --------------------GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYL 158 (234)
T ss_pred --------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33444555555555555555555555554322221 223444445555556666666666
Q ss_pred HHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 046775 524 ESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAMELVDTMP-FQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIE 598 (771)
Q Consensus 524 ~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~ 598 (771)
++..+. .|+ ...+..+...+...|++++|.+.+++.. ..| +...|..+.......|+.+.|....+.+.+..
T Consensus 159 ~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 159 TRALQI---DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHh---CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 555432 222 3445555566666666666666655541 122 33344444555556666666666665555443
No 71
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=7.5e-06 Score=85.92 Aligned_cols=428 Identities=13% Similarity=0.086 Sum_probs=238.7
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhcCCcHHHHHHHHHHHHHccC-CCChhHHHHHHHhhh--cCCCh
Q 046775 172 CVLHEHNDWALKLFQQMKSSEINPNMFTYTSALKACAGMELKELGRQLHCSLIKMEI-KSDPIVGVGLVDMYA--KCGSM 248 (771)
Q Consensus 172 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~-~~~~~~~~~Li~~y~--~~g~~ 248 (771)
+..+|++++|.+.-.++...+ +-|...+..-+-+..+.+.++.|..+. ...+. ..+.+.+ +=.+|+ +.+..
T Consensus 22 ~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~i---kk~~~~~~~~~~~--fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 22 HGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLI---KKNGALLVINSFF--FEKAYCEYRLNKL 95 (652)
T ss_pred hccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHH---Hhcchhhhcchhh--HHHHHHHHHcccH
Confidence 344555666666655555443 222333444444455555555554222 11111 1111110 233443 67888
Q ss_pred HHHHHHhhhCCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-HhhHHHHHHHHhccCChhHHHHHHHHHHHh
Q 046775 249 DEARMIFHLMPEKNLIAWNIVISGHLQNGGDMEAASLFPWMYREGVGFD-QTTLSTVLKSVASFQAIGVCKQVHALSVKT 327 (771)
Q Consensus 249 ~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 327 (771)
++|...++....-+...-..-...+.+.|++++|+++|+.+.+.+..-- ...-..++.+-+... + ..+...
T Consensus 96 Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~----~----~~~q~v 167 (652)
T KOG2376|consen 96 DEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQ----V----QLLQSV 167 (652)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhh----H----HHHHhc
Confidence 9999888855554544555555667788999999999999987764322 222223332221111 0 011111
Q ss_pred cCCCchHHHhH---HHHHHHhcCCHHHHHHHHHhc--------CCCcee-----c-----HHHHHHHHHHcCChHHHHHH
Q 046775 328 AFESDDYIVNS---LIDAYGKCGHVEDAVKIFKES--------SAVDLV-----A-----CTSMITAYAQFGLGEEALKL 386 (771)
Q Consensus 328 g~~~~~~~~~~---Li~~y~k~g~~~~A~~~f~~~--------~~~~~~-----~-----~~~li~~~~~~g~~~~A~~l 386 (771)
...| ..+|.. ..-.+...|++.+|+++++.. .+.|.- . ---|.-.+...|+.++|.++
T Consensus 168 ~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 168 PEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred cCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 1122 222222 344567789999999998765 221111 1 11234456678999999999
Q ss_pred HHHHhcCCCCCCHhhHHHH---HHHhhcccchHHH--------------HHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 046775 387 YLEMQDREINPDSFVCSSL---LNACANLSAYEQG--------------KQVHVHIIKFGFMSDTFAGNSLVNMYAKCGS 449 (771)
Q Consensus 387 ~~~m~~~g~~p~~~t~~~l---l~a~~~~~~~~~a--------------~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~ 449 (771)
|...+... .+|....... |.+...-.++..+ ......+.+ .-......-++|+.+|. +.
T Consensus 247 y~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~-~qk~~i~~N~~lL~l~t--nk 322 (652)
T KOG2376|consen 247 YVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSK-KQKQAIYRNNALLALFT--NK 322 (652)
T ss_pred HHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHh--hh
Confidence 99998864 4454322222 2222222222111 011111111 10112333456777775 55
Q ss_pred HHHHHHHHhhCCCCC-hhHHHHHHHH-HH-HcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHhccCcHHHHHHHHH
Q 046775 450 IDDADRAFSEIPDRG-IVSWSAMIGG-LA-QHGRGKEALQMFGQMLEDGVLPNHIT--LVSVLCACNHAGLVAEAKHHFE 524 (771)
Q Consensus 450 ~~~A~~~f~~~~~~~-~~~~~~li~~-~~-~~g~~~~A~~l~~~m~~~g~~pd~~t--~~~ll~a~~~~g~~~~a~~~~~ 524 (771)
.+.+++.-...+..- ...+.+++.. +. +.....+|.+++...-+. .|+... ....+.--...|+++.|.+++.
T Consensus 323 ~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 323 MDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred HHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 677777777776332 2334444433 22 222577888888877763 565533 3334445667899999999988
Q ss_pred --------HHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCCH-hHHHHHHHHHHhcCCHHHH
Q 046775 525 --------SMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTM--------PFQANA-SVWGALLGAARIYKNVEVG 587 (771)
Q Consensus 525 --------~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m--------~~~p~~-~~~~~ll~a~~~~~~~~~a 587 (771)
+..+. +- .+.+.+.++.++.+.+.-+-|-.++.+. +-.+.. .+|.-+..--..+|+.+.|
T Consensus 401 ~~~~~~~ss~~~~-~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea 477 (652)
T KOG2376|consen 401 LFLESWKSSILEA-KH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEA 477 (652)
T ss_pred HHhhhhhhhhhhh-cc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHH
Confidence 44422 33 3455678899999888755555544432 333322 2444444555678999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHH
Q 046775 588 QHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKV 624 (771)
Q Consensus 588 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 624 (771)
...++.+++.+|+|....+.|.-.|+.. +.+.|..+
T Consensus 478 ~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l 513 (652)
T KOG2376|consen 478 SSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESL 513 (652)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHH
Confidence 9999999999999999999999998875 34455444
No 72
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=2.1e-08 Score=96.73 Aligned_cols=228 Identities=14% Similarity=0.088 Sum_probs=172.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 046775 368 TSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKC 447 (771)
Q Consensus 368 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~ 447 (771)
+.|..+|.+.|.+.+|.+.|+.-... .|-..||..+-.+|.+...+..|..++..-++. ++.|+.........+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 34666777777777777777666554 455556666666777777777777666665553 355555556666677777
Q ss_pred CCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 046775 448 GSIDDADRAFSEIPD---RGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFE 524 (771)
Q Consensus 448 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~ 524 (771)
++.++|.++|+...+ -|+.+.-.+..+|.-.++++-|+.+++++++.|+. +..-|..+.-+|..++.+|-++..|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 888888888887763 34555566677888889999999999999998864 66678888888988888888888877
Q ss_pred HHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 046775 525 SMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMPFQAN--ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKS 602 (771)
Q Consensus 525 ~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~--~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~ 602 (771)
+.... | -.|+ ..+|-.|.-....-||+..|.+.++-++.-+|++.
T Consensus 383 RAlst--------------------------------a-t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ 429 (478)
T KOG1129|consen 383 RALST--------------------------------A-TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG 429 (478)
T ss_pred HHHhh--------------------------------c-cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH
Confidence 76532 1 1232 34787777777788999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 046775 603 STHVLLSNIYASAGMWDNVAKVRRFMKDNK 632 (771)
Q Consensus 603 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 632 (771)
.+|+.|+-+-.+.|+.++|..+....++..
T Consensus 430 ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 430 EALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 999999999999999999999998887654
No 73
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=4.6e-05 Score=84.37 Aligned_cols=506 Identities=15% Similarity=0.153 Sum_probs=261.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHhcCCC--CCcchHHHH-----HHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHH
Q 046775 33 ANSLVVMYAKCGNFIDSRRLFDAIPE--RSVVSWNSL-----FSCYVHCDFLEEAVCFFKEMVLSGIRPNEFSLSSMINA 105 (771)
Q Consensus 33 ~~~ll~~y~~~g~~~~A~~~f~~~~~--~~~~~~n~l-----i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 105 (771)
+..+.+.+.|.|-+..|++.|..+.. +.++. +.+ +-.|.-.-.++++++.++.|...+++.|..+...+-.-
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVh-th~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatk 687 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVH-THLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATK 687 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHH-hccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 66677788899999999988887754 22221 111 22344455788999999999998888888777777666
Q ss_pred HhcCCCcHHHHHHHHHHHHh-----------CCCCChhhHHHHHHHHHhcCChhHHHHHHccCCC---------------
Q 046775 106 CAGSGDSLLGRKIHGYSIKL-----------GYDSDMFSANALVDMYAKVGNLEDAVAVFKDIEH--------------- 159 (771)
Q Consensus 106 ~~~~~~~~~a~~i~~~~~~~-----------g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--------------- 159 (771)
|...-..+...++|+..... ++..|+.+.-..|.+-++.|++.+.+++.++-.-
T Consensus 688 y~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL 767 (1666)
T KOG0985|consen 688 YHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKL 767 (1666)
T ss_pred HHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccc
Confidence 65544444455555544321 3466777778889999999999999888765431
Q ss_pred ----C------------CcccH------HHHHHHHHhCCChhHHHHHHHHHHhCCCCC-----------ChhhHHHHHHH
Q 046775 160 ----P------------DIVSW------NAVIAGCVLHEHNDWALKLFQQMKSSEINP-----------NMFTYTSALKA 206 (771)
Q Consensus 160 ----~------------~~~~~------n~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----------~~~t~~~ll~a 206 (771)
| |.+.| --.|..|++.=++...-.+...+.+....- ..+...-+..-
T Consensus 768 ~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~E 847 (1666)
T KOG0985|consen 768 TDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEE 847 (1666)
T ss_pred cccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHH
Confidence 1 11111 112344444433322222222222111000 00111222233
Q ss_pred hhcCCcHHHHHHHHHHHHHccCCCChhHHHHHHHhhhcCCChHHHHHHhhhC------------CCCCe-----------
Q 046775 207 CAGMELKELGRQLHCSLIKMEIKSDPIVGVGLVDMYAKCGSMDEARMIFHLM------------PEKNL----------- 263 (771)
Q Consensus 207 ~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m------------~~~~~----------- 263 (771)
+-+.+.+..-...++..+..|. -|+.++|+|...|...++-.+- .+.+- .+||+
T Consensus 848 vEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~--fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGq 924 (1666)
T KOG0985|consen 848 VEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPER--FLKENPYYDSKVVGKYCEKRDPHLACVAYERGQ 924 (1666)
T ss_pred HHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHH--hcccCCcchhhHHhhhhcccCCceEEEeecccC
Confidence 4445555555566666666664 3777888888777655432211 11000 01111
Q ss_pred --------ehHHHHHHH----HHhCCCh---hHH--------HHHHHHHHHCCC--CCCHhhHHHHHHHHhccCChhHHH
Q 046775 264 --------IAWNIVISG----HLQNGGD---MEA--------ASLFPWMYREGV--GFDQTTLSTVLKSVASFQAIGVCK 318 (771)
Q Consensus 264 --------~~~~~li~~----~~~~g~~---~~A--------~~~~~~m~~~g~--~pd~~t~~~ll~a~~~~~~~~~a~ 318 (771)
..-|+|... +....+. .+. ..+.++....++ ..|+...+....|+...+-..+-.
T Consensus 925 cD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLI 1004 (1666)
T KOG0985|consen 925 CDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELI 1004 (1666)
T ss_pred CcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHH
Confidence 001111111 1111111 111 122223322222 123333333444444444444444
Q ss_pred HHHHHHHHh--cCCCchHHHhHHH---------------------------HHHHhcCCHHHHHHHHHhcCC--------
Q 046775 319 QVHALSVKT--AFESDDYIVNSLI---------------------------DAYGKCGHVEDAVKIFKESSA-------- 361 (771)
Q Consensus 319 ~i~~~~~~~--g~~~~~~~~~~Li---------------------------~~y~k~g~~~~A~~~f~~~~~-------- 361 (771)
++++.++-. -+..+....|.|+ ......+-+++|..+|+....
T Consensus 1005 ELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VL 1084 (1666)
T KOG0985|consen 1005 ELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVL 1084 (1666)
T ss_pred HHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHH
Confidence 444443311 1111112222221 112223334555555543210
Q ss_pred -----------------CceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHH
Q 046775 362 -----------------VDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVH 424 (771)
Q Consensus 362 -----------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 424 (771)
.....|..+..+-.+.|...+|++-|-+. -|+..|.-++.++.+.|.++.-...+..
T Consensus 1085 ie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~M 1158 (1666)
T KOG0985|consen 1085 IENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLM 1158 (1666)
T ss_pred HHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 23356888888888888888888777543 3566788888888888888888888877
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-----------------------ChhHHHHHHHHHHHcCCh
Q 046775 425 IIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPDR-----------------------GIVSWSAMIGGLAQHGRG 481 (771)
Q Consensus 425 ~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~-----------------------~~~~~~~li~~~~~~g~~ 481 (771)
+.+..-+|. +-+.||-+|+|.+++.+-++....-... ++..|..+...+...|++
T Consensus 1159 aRkk~~E~~--id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~Lgey 1236 (1666)
T KOG0985|consen 1159 ARKKVREPY--IDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEY 1236 (1666)
T ss_pred HHHhhcCcc--chHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 777664444 4567888888888887776655422111 112344444555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHh
Q 046775 482 KEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDT 561 (771)
Q Consensus 482 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~ 561 (771)
+.|...-++. .+.-||--+-.||...+.+.-|. |-.. .+.-..+-..-++..|...|.++|-+.+++.
T Consensus 1237 Q~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL-~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1237 QGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----ICGL-NIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred HHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hcCc-eEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 5555443322 12335666666665554443332 1100 1122233345566666666666666666654
Q ss_pred C
Q 046775 562 M 562 (771)
Q Consensus 562 m 562 (771)
.
T Consensus 1305 ~ 1305 (1666)
T KOG0985|consen 1305 G 1305 (1666)
T ss_pred h
Confidence 3
No 74
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.95 E-value=6e-06 Score=89.30 Aligned_cols=397 Identities=12% Similarity=0.060 Sum_probs=244.1
Q ss_pred cCCCChhHHHHHHHhhhcCCChHHHHHHhhhCCC---CCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHH
Q 046775 227 EIKSDPIVGVGLVDMYAKCGSMDEARMIFHLMPE---KNLIAWNIVISGHLQNGGDMEAASLFPWMYREGVGFDQTTLST 303 (771)
Q Consensus 227 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 303 (771)
.+..|..+|..|.-+...+|+++.+.+.|++... .....|+.+-..|...|....|+.+++.-......|+..+.-.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4567889999999999999999999999998764 3456799999999999999999999998766554555444333
Q ss_pred H-HHHHh-ccCChhHHHHHHHHHHHh--cC--CCchHHHhHHHHHHHhcC-----------CHHHHHHHHHhcCCC---c
Q 046775 304 V-LKSVA-SFQAIGVCKQVHALSVKT--AF--ESDDYIVNSLIDAYGKCG-----------HVEDAVKIFKESSAV---D 363 (771)
Q Consensus 304 l-l~a~~-~~~~~~~a~~i~~~~~~~--g~--~~~~~~~~~Li~~y~k~g-----------~~~~A~~~f~~~~~~---~ 363 (771)
+ -..|. +.+..+++..+-..++.. +. ...+..+-.+.-+|+..- ...++...+++..+. |
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3 33343 345666666666555552 11 122333444444444321 123344444444322 2
Q ss_pred eecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHh-CCCCchhHHHHHHH
Q 046775 364 LVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKF-GFMSDTFAGNSLVN 442 (771)
Q Consensus 364 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g~~~~~~~~~~Li~ 442 (771)
...---+---|+..++.+.|++..++....+-.-+...+.-+.-..+..+++..|..+.+..... |. |-...-.-+.
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~~~ 555 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGKIH 555 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhhhh
Confidence 22222223345666778888888888777655556666666666666677777777777665432 21 0000000011
Q ss_pred HHHhcCCHHHHHH--------------------------HHhhCC-----CCCh-hHHHHHHHHHHHcCChHHHHHHHHH
Q 046775 443 MYAKCGSIDDADR--------------------------AFSEIP-----DRGI-VSWSAMIGGLAQHGRGKEALQMFGQ 490 (771)
Q Consensus 443 ~y~k~g~~~~A~~--------------------------~f~~~~-----~~~~-~~~~~li~~~~~~g~~~~A~~l~~~ 490 (771)
.-..-++.++|.. .+..+. ..|. .++..+.. ... -+.+.+..-..
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~-l~a-~~~~~~~se~~- 632 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS-LVA-SQLKSAGSELK- 632 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH-HHH-hhhhhcccccc-
Confidence 1111223333222 222111 0011 11111111 111 01111100000
Q ss_pred HHHCCCCC--CH------HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHh
Q 046775 491 MLEDGVLP--NH------ITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAMELVDT 561 (771)
Q Consensus 491 m~~~g~~p--d~------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~ 561 (771)
|...-+.| +. ..+......+...+..++|+..+.+.. ++.|. ...|.-....+-..|+++||.+.|..
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLV 709 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 11111222 32 123455567788899999998887766 44554 55666677888999999999998876
Q ss_pred C-CCCCCHh-HHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 046775 562 M-PFQANAS-VWGALLGAARIYKNVEVGQH--AAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 562 m-~~~p~~~-~~~~ll~a~~~~~~~~~a~~--~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
. .+.|+.+ +..+|...+...|+-..|+. +...+++++|.|+.+|..|+.++-+.|+.++|.+-+...-+.
T Consensus 710 Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 710 ALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 6 5888765 78888888888999888888 999999999999999999999999999999999999877654
No 75
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.94 E-value=2.6e-05 Score=82.62 Aligned_cols=263 Identities=13% Similarity=0.123 Sum_probs=169.3
Q ss_pred ecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHh----hcccchHHHHHHHHHHHHh-----------C
Q 046775 365 VACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNAC----ANLSAYEQGKQVHVHIIKF-----------G 429 (771)
Q Consensus 365 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~----~~~~~~~~a~~i~~~~~~~-----------g 429 (771)
..|..+..-|-.+|+.+.|..+|.+......+ ...-+..+=-.| .+..+.+.|..+.+.+... +
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~-~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~ 466 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYK-TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNS 466 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc-chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCC
Confidence 46888899999999999999999987754321 111122222223 2345666777766655321 1
Q ss_pred CCC------chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHH---HHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 046775 430 FMS------DTFAGNSLVNMYAKCGSIDDADRAFSEIPDRGIVSWSAMI---GGLAQHGRGKEALQMFGQMLEDGVLPNH 500 (771)
Q Consensus 430 ~~~------~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 500 (771)
.++ +..+|+-++|.--.+|-++....+|+++.+.-+.|=..++ .-+-.|.-++++.+.+++-+..=-.|+.
T Consensus 467 ~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v 546 (835)
T KOG2047|consen 467 EPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV 546 (835)
T ss_pred CcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH
Confidence 122 3445566677777889999999999988754443322222 2234566788999988876664223555
Q ss_pred H-HHHHHHH---HHhccCcHHHHHHHHHHHHHhhCCCCCc--chHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCH--hH
Q 046775 501 I-TLVSVLC---ACNHAGLVAEAKHHFESMEKKFGIQPMQ--EHYACMIDILGRAGKFQEAMELVDTMP--FQANA--SV 570 (771)
Q Consensus 501 ~-t~~~ll~---a~~~~g~~~~a~~~~~~m~~~~~i~p~~--~~y~~lv~~l~r~g~~~eA~~~~~~m~--~~p~~--~~ 570 (771)
. .|+..|. .=...-.++.|+.+|++..+ |.+|.. ..|-...++=-+-|.-..|++++++.. .+|.. ..
T Consensus 547 ~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~m 624 (835)
T KOG2047|consen 547 YDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDM 624 (835)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3 3444444 32334578999999999986 666652 223333444456788889999999984 34432 37
Q ss_pred HHHHHH-HHHhcCCHHHHHHHHHHHHhcCCCCchh--HHHHHHHHHhcCCchhHHHHHHHHHhC
Q 046775 571 WGALLG-AARIYKNVEVGQHAAEMLFAIEPEKSST--HVLLSNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 571 ~~~ll~-a~~~~~~~~~a~~~~~~~~~l~p~~~~~--~~~l~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
|+..+. +-.+.| +.....+++++++.=|++..- -.-.+.+=.+.|..+.|..+...-.+-
T Consensus 625 yni~I~kaae~yG-v~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 625 YNIYIKKAAEIYG-VPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred HHHHHHHHHHHhC-CcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 888776 334444 445678899999988865443 345678888999999999888765554
No 76
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.92 E-value=9e-08 Score=88.66 Aligned_cols=162 Identities=13% Similarity=0.073 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHH
Q 046775 467 SWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHI-TLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMID 544 (771)
Q Consensus 467 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~ 544 (771)
+...+..+|.+.|+...|..-+++.++ ..|+.. ++..+...|...|..+.|.+.|++.. .+.|+ .+..+....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhH
Confidence 344567788888888888888888888 456654 78888888888899999988888877 44665 667778888
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchh
Q 046775 545 ILGRAGKFQEAMELVDTMPFQAN----ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDN 620 (771)
Q Consensus 545 ~l~r~g~~~eA~~~~~~m~~~p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 620 (771)
-||..|++++|...|++....|+ ..+|..+.....+.|+.+.|+..+++.++++|+++.+...+++...+.|++-+
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 88999999999999988744443 34777776666789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 046775 621 VAKVRRFMKDNKL 633 (771)
Q Consensus 621 a~~~~~~m~~~g~ 633 (771)
|.-..+....+|.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999988877764
No 77
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.92 E-value=1.2e-05 Score=87.09 Aligned_cols=439 Identities=12% Similarity=0.042 Sum_probs=252.7
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHH
Q 046775 127 YDSDMFSANALVDMYAKVGNLEDAVAVFKDIEH---PDIVSWNAVIAGCVLHEHNDWALKLFQQMKSSEINPNMFTYTSA 203 (771)
Q Consensus 127 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 203 (771)
+.-|..+|..|.-+..++|+++.+-+.|++... .....|+.+-..|+-.|....|+.+++.-......|+..+-..+
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 456888999999999999999999999988654 34557999999999999999999999876654433544443333
Q ss_pred H-HHhh-cCCcHHHHHHHHHHHHHcc--C--CCChhHHHHHHHhhhcCCChHHHHHHhhhCCCCCeehHHHHHHHHHhCC
Q 046775 204 L-KACA-GMELKELGRQLHCSLIKME--I--KSDPIVGVGLVDMYAKCGSMDEARMIFHLMPEKNLIAWNIVISGHLQNG 277 (771)
Q Consensus 204 l-~a~~-~~~~~~~a~~l~~~~~~~g--~--~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g 277 (771)
. +.|. +.+..++|...-..++... . ......+-.+.-+|...- +...+|+- +..
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A--------------~~a~~~se------R~~ 458 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQA--------------RQANLKSE------RDA 458 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHh--------------hcCCChHH------HHH
Confidence 3 3343 4455666665555555421 0 011112222222221110 00011110 011
Q ss_pred ChhHHHHHHHHHHHCC-CCCCHhhHHHHHHHHhccCChhHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcCCHHHHHHHH
Q 046775 278 GDMEAASLFPWMYREG-VGFDQTTLSTVLKSVASFQAIGVCKQVHALSVKTAFESDDYIVNSLIDAYGKCGHVEDAVKIF 356 (771)
Q Consensus 278 ~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f 356 (771)
...++++.+++..+.+ -.|+..-|.++- ++-.++++.|.+...+..+.+-..+...+.-|.-.+.-.+++.+|+.+.
T Consensus 459 ~h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vv 536 (799)
T KOG4162|consen 459 LHKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVV 536 (799)
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 2345566666665532 334444444433 3445567777777777777665666677777777777777777777776
Q ss_pred HhcCC---CceecHHHHHHHHHHcCChHHHHHHHHHHhcC--CCCCCHhhHHHHHHHhhcccchHHHHHHHHHHH--HhC
Q 046775 357 KESSA---VDLVACTSMITAYAQFGLGEEALKLYLEMQDR--EINPDSFVCSSLLNACANLSAYEQGKQVHVHII--KFG 429 (771)
Q Consensus 357 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~--~~g 429 (771)
+...+ .|.+....-|..-..-++.++|+.+...+... ...|-..|.. .|.. .+....+. ...
T Consensus 537 d~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~--------~g~~---~~lk~~l~la~~q 605 (799)
T KOG4162|consen 537 DAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLD--------EGKL---LRLKAGLHLALSQ 605 (799)
T ss_pred HHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhh--------hhhh---hhhhcccccCccc
Confidence 54322 11111111122222356666666666655431 0011011100 0000 00000000 000
Q ss_pred CCCchhHHH---HHHHHHHhcCCHHHHHHHHhhCCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 046775 430 FMSDTFAGN---SLVNMYAKCGSIDDADRAFSEIPDRG------IVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNH 500 (771)
Q Consensus 430 ~~~~~~~~~---~Li~~y~k~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 500 (771)
....+.++. +++..=.+.-..+.....+...+.++ ...|......+...++.++|...+.+... +.|-.
T Consensus 606 ~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~ 683 (799)
T KOG4162|consen 606 PTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLS 683 (799)
T ss_pred ccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhh
Confidence 001111222 22221111111112222222233333 23577777888889999999888887776 44443
Q ss_pred H-HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHH--HHHhC-CCCCC-HhHHHHH
Q 046775 501 I-TLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAME--LVDTM-PFQAN-ASVWGAL 574 (771)
Q Consensus 501 ~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~--~~~~m-~~~p~-~~~~~~l 574 (771)
. .|......+...|..++|.+.|.... -+.|+ +..-.++..+|.+.|+-.-|.. ++..+ ...|+ ...|..|
T Consensus 684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~L 760 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYL 760 (799)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 3 44444456677889999999888765 56777 6677888999999997766666 77777 46774 5599999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 046775 575 LGAARIYKNVEVGQHAAEMLFAIEPEKSS 603 (771)
Q Consensus 575 l~a~~~~~~~~~a~~~~~~~~~l~p~~~~ 603 (771)
....++.|+.+.|...++-++++++.+|.
T Consensus 761 G~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 761 GEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 99999999999999999999999998774
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.89 E-value=5.5e-07 Score=92.64 Aligned_cols=218 Identities=13% Similarity=0.009 Sum_probs=151.0
Q ss_pred CChHHHHHHHHHHhcCC-CCCC--HhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 046775 378 GLGEEALKLYLEMQDRE-INPD--SFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDAD 454 (771)
Q Consensus 378 g~~~~A~~l~~~m~~~g-~~p~--~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~ 454 (771)
+..+.++.-+.++.... ..|+ ...+...-..+...|+.+.|...+..+++.. +.++..++.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45566677776666432 2222 2345555556777788888888888887765 567889999999999999999999
Q ss_pred HHHhhCCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhC
Q 046775 455 RAFSEIPD--R-GIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFG 531 (771)
Q Consensus 455 ~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 531 (771)
..|+...+ | +..+|..+...+...|++++|++.|++..+ ..|+.......+..+...++.++|...|.+....
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-- 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-- 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh--
Confidence 99998753 3 467888899999999999999999999998 5676543222222344567899999999775532
Q ss_pred CCCCcchHHHHHHHHhhcCCHH--HHHHHHHh-CC----CCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 046775 532 IQPMQEHYACMIDILGRAGKFQ--EAMELVDT-MP----FQAN-ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSS 603 (771)
Q Consensus 532 i~p~~~~y~~lv~~l~r~g~~~--eA~~~~~~-m~----~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~ 603 (771)
..|+... ..++..+ .|++. ++.+.+.+ .. ..|+ ...|..|...+...|+.+.|...++++++++|.|..
T Consensus 195 ~~~~~~~-~~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWG-WNIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccH-HHHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 2343322 2333333 44443 33333322 11 1222 347888999999999999999999999999985443
No 79
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.88 E-value=2.8e-07 Score=98.87 Aligned_cols=233 Identities=17% Similarity=0.196 Sum_probs=147.2
Q ss_pred hHHHhHHHHHHHhcCCHHHHHHHHHhcCCC----------cee-cHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhh
Q 046775 333 DYIVNSLIDAYGKCGHVEDAVKIFKESSAV----------DLV-ACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFV 401 (771)
Q Consensus 333 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~----------~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 401 (771)
..+..-|..+|...|+++.|..+|+...+. .+. ..+.+...|...+++++|..+|+++..-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i-------- 270 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI-------- 270 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--------
Confidence 345555777777777777777777653221 111 1122334455555555555555555421
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHhhCC----------CCCh-hH
Q 046775 402 CSSLLNACANLSAYEQGKQVHVHIIKFGFMSD---TFAGNSLVNMYAKCGSIDDADRAFSEIP----------DRGI-VS 467 (771)
Q Consensus 402 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~Li~~y~k~g~~~~A~~~f~~~~----------~~~~-~~ 467 (771)
.... .| +.+ ..+++.|...|.+.|++++|...+++.. .+.+ .-
T Consensus 271 --------------------~e~~--~G-~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~ 327 (508)
T KOG1840|consen 271 --------------------REEV--FG-EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQ 327 (508)
T ss_pred --------------------HHHh--cC-CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHH
Confidence 0000 01 122 2334445556777777766666555432 1222 23
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHHHHhh-----CCCCC
Q 046775 468 WSAMIGGLAQHGRGKEALQMFGQMLED---GVLPNH----ITLVSVLCACNHAGLVAEAKHHFESMEKKF-----GIQPM 535 (771)
Q Consensus 468 ~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~i~p~ 535 (771)
.+.++..+...+++++|..+++...+. -+.++. -++..+...+.+.|++++|.++|++..+.. +..+.
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 556677778888888888888766542 133443 267888888889999999999888876543 11222
Q ss_pred -cchHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046775 536 -QEHYACMIDILGRAGKFQEAMELVDTM--------PFQANAS-VWGALLGAARIYKNVEVGQHAAEMLFA 596 (771)
Q Consensus 536 -~~~y~~lv~~l~r~g~~~eA~~~~~~m--------~~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~ 596 (771)
..+++-|...|.+.+++++|.++|.+. |..|+.. ++..|...|+..|++|.|+.+.++++.
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 456778888888888888888888764 3455544 899999999999999999999998874
No 80
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.87 E-value=4.3e-06 Score=92.45 Aligned_cols=564 Identities=12% Similarity=0.031 Sum_probs=280.5
Q ss_pred HHHHHHHHHhCCCCC-hhhHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhHHC
Q 046775 15 LQVHGIVVFTGFDSD-EFVANSLVVMYAKCGNFIDSRRLFDAIPE---RSVVSWNSLFSCYVHCDFLEEAVCFFKEMVLS 90 (771)
Q Consensus 15 ~~~~~~~~~~g~~~~-~~~~~~ll~~y~~~g~~~~A~~~f~~~~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~ 90 (771)
..+|..+...-+.++ ...|..|-..|+...+...|.+.|+..-+ .+..+|......|++..+++.|..+.-.--+.
T Consensus 476 ~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk 555 (1238)
T KOG1127|consen 476 LALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK 555 (1238)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh
Confidence 334444443334333 23566666677766677777777776543 45667777777777777777777762221111
Q ss_pred C-CCCCcchHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHccCCCCCcccHHH-H
Q 046775 91 G-IRPNEFSLSSMINACAGSGDSLLGRKIHGYSIKLGYDSDMFSANALVDMYAKVGNLEDAVAVFKDIEHPDIVSWNA-V 168 (771)
Q Consensus 91 g-~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~n~-l 168 (771)
. ...-...+..+--.+...++...+..-++..++.. +.|...|..|..+|.++|....|.++|++...-+..+|-. .
T Consensus 556 a~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~f 634 (1238)
T KOG1127|consen 556 APAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRF 634 (1238)
T ss_pred chHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHH
Confidence 0 00011112222222334455555555555555544 4455667777777777777777777776665533333222 1
Q ss_pred H--HHHHhCCChhHHHHHHHHHHhCC------CCCChhhHHHHHHHhhcCCcHHHHHHHHHHHHHccCCCChhHHHHHHH
Q 046775 169 I--AGCVLHEHNDWALKLFQQMKSSE------INPNMFTYTSALKACAGMELKELGRQLHCSLIKMEIKSDPIVGVGLVD 240 (771)
Q Consensus 169 i--~~~~~~g~~~~A~~l~~~m~~~g------~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~ 240 (771)
- ..-+..|.+.+|+..+....... ..--..++..+...+...|-...+...+
T Consensus 635 k~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~-------------------- 694 (1238)
T KOG1127|consen 635 KEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFF-------------------- 694 (1238)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHH--------------------
Confidence 1 11234566666666665544320 0000111111111111111111111111
Q ss_pred hhhcCCChHHHHHHhhhCC----CCCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCh--
Q 046775 241 MYAKCGSMDEARMIFHLMP----EKNLIAWNIVISGHLQNGGDMEAASLFPWMYREGVGFDQTTLSTVLKSVASFQAI-- 314 (771)
Q Consensus 241 ~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~-- 314 (771)
+++.+.|.-.. ..|...|-.+- .|..+|-... .. .|+......+..-.-..+..
T Consensus 695 --------eksie~f~~~l~h~~~~~~~~Wi~as----------dac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~ 754 (1238)
T KOG1127|consen 695 --------EKSIESFIVSLIHSLQSDRLQWIVAS----------DACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKK 754 (1238)
T ss_pred --------HHHHHHHHHHHHHhhhhhHHHHHHHh----------HHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcc
Confidence 11111111110 01222222221 1222222222 00 12222111111111112211
Q ss_pred -h---HHHHHHHHHHHhcCCCchHHHhHHHHHHHh----cC----CHHHHHHHHHhc---CCCceecHHHHHHHHHHcCC
Q 046775 315 -G---VCKQVHALSVKTAFESDDYIVNSLIDAYGK----CG----HVEDAVKIFKES---SAVDLVACTSMITAYAQFGL 379 (771)
Q Consensus 315 -~---~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k----~g----~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~ 379 (771)
+ .|-+.. .....+..+...|..|...|.+ +| +...|...+... ...+...||+|-.. ...|.
T Consensus 755 ~d~l~Lg~~c~--~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gn 831 (1238)
T KOG1127|consen 755 NDLLFLGYECG--IAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGN 831 (1238)
T ss_pred hhHHHHHHHHh--hHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccch
Confidence 1 010100 0011112223333333333322 22 223566666543 34677788877555 55566
Q ss_pred hHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 046775 380 GEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSE 459 (771)
Q Consensus 380 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 459 (771)
+.-|...|-+-... .+-+..+|..+--.|....+.+.|.+.+...+... |.+..-|-...-.-...|++-++..+|..
T Consensus 832 va~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 832 VACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 66666666554443 23355677777777778888888888888776654 33433333332333455777777777765
Q ss_pred C-----C---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC---------CCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 046775 460 I-----P---DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLED---------GVLPNHITLVSVLCACNHAGLVAEAKHH 522 (771)
Q Consensus 460 ~-----~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---------g~~pd~~t~~~ll~a~~~~g~~~~a~~~ 522 (771)
- . -++..-|-.-..-..++|+.++-+..-+.+-.. |.+-+...|...++..-|.+...++.+.
T Consensus 910 s~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~el 989 (1238)
T KOG1127|consen 910 SDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALEL 989 (1238)
T ss_pred hHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHH
Confidence 2 1 234455555555566777766655544443221 2333445788888888888888887777
Q ss_pred HHHHHHhhCCCCCcchHHH----HHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 046775 523 FESMEKKFGIQPMQEHYAC----MIDILGRAGKFQEAMELVDTMPFQANASVWGALLGAARIYKNVEVGQHAAEMLFAIE 598 (771)
Q Consensus 523 ~~~m~~~~~i~p~~~~y~~----lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~ 598 (771)
..+...-...+-+...|+. ...++...|.++.|..-+...+.+-+..+-++-++. ...|+++.+...+++++.+-
T Consensus 990 a~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis 1068 (1238)
T KOG1127|consen 990 ATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSIS 1068 (1238)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhc
Confidence 6665432222334444543 344556678888888777777766666666555555 55678888999999988876
Q ss_pred CCCchhHHHHHHH---HHhcCCchhHHHHH
Q 046775 599 PEKSSTHVLLSNI---YASAGMWDNVAKVR 625 (771)
Q Consensus 599 p~~~~~~~~l~~~---y~~~g~~~~a~~~~ 625 (771)
.++.-.-++++.+ ...++.-+.|....
T Consensus 1069 ~se~d~vvLl~kva~~~g~~~~k~~A~~lL 1098 (1238)
T KOG1127|consen 1069 NSESDKVVLLCKVAVCMGLARQKNDAQFLL 1098 (1238)
T ss_pred ccccchhhhhHHHHHHHhhcccchHHHHHH
Confidence 5555444444443 33445555565543
No 81
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.84 E-value=3.5e-06 Score=82.62 Aligned_cols=95 Identities=17% Similarity=0.276 Sum_probs=56.9
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCC---ChhHHHHH-HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhcc
Q 046775 439 SLVNMYAKCGSIDDADRAFSEIPDR---GIVSWSAM-IGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVL-CACNHA 513 (771)
Q Consensus 439 ~Li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll-~a~~~~ 513 (771)
.+..+++..|++.+|+++|-.+..+ |-.+|-+| ..+|.++++++-|..++-++. -+.+..++..++ .-|.+.
T Consensus 398 N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~ 474 (557)
T KOG3785|consen 398 NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKA 474 (557)
T ss_pred HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHH
Confidence 3566677777777777777766643 34555554 356677777777766554432 222333433333 457777
Q ss_pred CcHHHHHHHHHHHHHhhCCCCCcchH
Q 046775 514 GLVAEAKHHFESMEKKFGIQPMQEHY 539 (771)
Q Consensus 514 g~~~~a~~~~~~m~~~~~i~p~~~~y 539 (771)
+.+--|-+.|+.+. ...|+++.|
T Consensus 475 ~eFyyaaKAFd~lE---~lDP~pEnW 497 (557)
T KOG3785|consen 475 NEFYYAAKAFDELE---ILDPTPENW 497 (557)
T ss_pred HHHHHHHHhhhHHH---ccCCCcccc
Confidence 77777777777665 346776665
No 82
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.83 E-value=4.1e-05 Score=81.81 Aligned_cols=235 Identities=17% Similarity=0.246 Sum_probs=136.9
Q ss_pred HhHHHHHHHhcCCHHHHHHHHHhcCCCceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccch
Q 046775 336 VNSLIDAYGKCGHVEDAVKIFKESSAVDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAY 415 (771)
Q Consensus 336 ~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 415 (771)
|.-+.+-|+..|+++.|+++|-+.. .++--|..|.++|+++.|.++-.+.. | |
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~--~--~------------------ 820 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECH--G--P------------------ 820 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhc--C--c------------------
Confidence 4445566777777777777765432 24455666777777777766655433 1 1
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 046775 416 EQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPDRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDG 495 (771)
Q Consensus 416 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 495 (771)
+.....|-+-..-.-+.|++.+|+++|-.+..|+. .|..|-++|..+..+++.++
T Consensus 821 ---------------e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k----- 875 (1636)
T KOG3616|consen 821 ---------------EATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEK----- 875 (1636)
T ss_pred ---------------hhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHH-----
Confidence 11222233333334456777777777777766664 35667777777777776665
Q ss_pred CCCCHH--HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCC---CCCC-Hh
Q 046775 496 VLPNHI--TLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMP---FQAN-AS 569 (771)
Q Consensus 496 ~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~---~~p~-~~ 569 (771)
..||.. |-..+..-+-..|++.+|...|-+.. -|..-|.+|-.+|.+++|..+-+.-. .+.. ..
T Consensus 876 ~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~f 945 (1636)
T KOG3616|consen 876 HHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAF 945 (1636)
T ss_pred hChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHH
Confidence 344442 55556666667777777776665442 25566777777777777777765432 1111 12
Q ss_pred HHHHHHH------HHHhcCCHHHHHHH------HHHHHhc-----CCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 046775 570 VWGALLG------AARIYKNVEVGQHA------AEMLFAI-----EPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDNK 632 (771)
Q Consensus 570 ~~~~ll~------a~~~~~~~~~a~~~------~~~~~~l-----~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 632 (771)
.|.--++ ...+||-++.|... ++-++++ ...-+..++.++--+...|++++|.+-+-...+.+
T Consensus 946 lwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 946 LWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred HHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 3432221 12345544444332 2222222 33456778888888999999999988776655443
No 83
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=8.9e-05 Score=78.13 Aligned_cols=180 Identities=13% Similarity=0.106 Sum_probs=108.4
Q ss_pred hHHHHHHHhcCCHHHHHHHHHhcCCCc-eecHHHHHHHHH--HcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhccc
Q 046775 337 NSLIDAYGKCGHVEDAVKIFKESSAVD-LVACTSMITAYA--QFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLS 413 (771)
Q Consensus 337 ~~Li~~y~k~g~~~~A~~~f~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 413 (771)
+.|+.+|. +..+.++++-...+... ...+.+++.... +...+.+|.+++...-+....-..+.....+..-...|
T Consensus 313 ~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~g 390 (652)
T KOG2376|consen 313 NALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQG 390 (652)
T ss_pred HHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcC
Confidence 44555554 45667777777776543 233444444332 22346777777777665321112344445555667788
Q ss_pred chHHHHHHHH--------HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC------CCC----hhHHHHHHHHH
Q 046775 414 AYEQGKQVHV--------HIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIP------DRG----IVSWSAMIGGL 475 (771)
Q Consensus 414 ~~~~a~~i~~--------~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~------~~~----~~~~~~li~~~ 475 (771)
+++.|..++. .+.+.+ ..+.+..+++.+|.+.++.+.|..++++.. ... ...|.-...--
T Consensus 391 n~~~A~~il~~~~~~~~ss~~~~~--~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~ 468 (652)
T KOG2376|consen 391 NPEVALEILSLFLESWKSSILEAK--HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFK 468 (652)
T ss_pred CHHHHHHHHHHHhhhhhhhhhhhc--cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHH
Confidence 9999988888 444433 344566788888888888777777776543 111 13344444455
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 046775 476 AQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHH 522 (771)
Q Consensus 476 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~ 522 (771)
.++|+.++|..+++++.+. -++|..+...++.||+.. +++.|..+
T Consensus 469 lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l 513 (652)
T KOG2376|consen 469 LRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESL 513 (652)
T ss_pred HhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHH
Confidence 5678888888888888774 244555777777777654 35555544
No 84
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.79 E-value=9.2e-05 Score=78.88 Aligned_cols=435 Identities=13% Similarity=0.084 Sum_probs=245.0
Q ss_pred cCCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHccCCC---CCcccHHHHHHHHHhCCChhHHHHH
Q 046775 108 GSGDSLLGRKIHGYSIKLGYDSDMFSANALVDMYAKVGNLEDAVAVFKDIEH---PDIVSWNAVIAGCVLHEHNDWALKL 184 (771)
Q Consensus 108 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~n~li~~~~~~g~~~~A~~l 184 (771)
..+.+..+.+..+.+++ +++....+.....-.+...|+.++|......-.. ++.+.|..+.-.+-...++++|++.
T Consensus 19 E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 44556666666666666 3333333333222234456888888877766554 5678899988877788899999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHhhcCCcHHHHHHHHHHHHHccCCCChhHHHHHHHhhhcCCChHHHHHHhhhC---CCC
Q 046775 185 FQQMKSSEINPNMFTYTSALKACAGMELKELGRQLHCSLIKMEIKSDPIVGVGLVDMYAKCGSMDEARMIFHLM---PEK 261 (771)
Q Consensus 185 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m---~~~ 261 (771)
|+..... .||....-- -|.-.-+..++++.....-... ...
T Consensus 98 y~nAl~~--~~dN~qilr----------------------------------DlslLQ~QmRd~~~~~~tr~~LLql~~~ 141 (700)
T KOG1156|consen 98 YRNALKI--EKDNLQILR----------------------------------DLSLLQIQMRDYEGYLETRNQLLQLRPS 141 (700)
T ss_pred HHHHHhc--CCCcHHHHH----------------------------------HHHHHHHHHHhhhhHHHHHHHHHHhhhh
Confidence 9987764 444322111 0000111112222222221111 123
Q ss_pred CeehHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCCHhhHHHHHHH------HhccCChhHHHHHHHHHHHhcCCCchH
Q 046775 262 NLIAWNIVISGHLQNGGDMEAASLFPWMYREG-VGFDQTTLSTVLKS------VASFQAIGVCKQVHALSVKTAFESDDY 334 (771)
Q Consensus 262 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~a------~~~~~~~~~a~~i~~~~~~~g~~~~~~ 334 (771)
....|.....++.-.|+...|..+++...+.. -.|+...+...... ....|.++.+.+......+. +.....
T Consensus 142 ~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla 220 (700)
T KOG1156|consen 142 QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLA 220 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHH
Confidence 45678888888888999999999998887764 35666665543332 23445556555554443322 112222
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHHhcCC--CceecHHHHH-HHHHHcCChHHHH-HHHHHHhcC---CCCCCHhhHHHHHH
Q 046775 335 IVNSLIDAYGKCGHVEDAVKIFKESSA--VDLVACTSMI-TAYAQFGLGEEAL-KLYLEMQDR---EINPDSFVCSSLLN 407 (771)
Q Consensus 335 ~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~li-~~~~~~g~~~~A~-~l~~~m~~~---g~~p~~~t~~~ll~ 407 (771)
.--.-.+.+.+.+++++|..++..+.. ||.+.|+... .++.+-.+.-+++ .+|....+. .-.|-.... +
T Consensus 221 ~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpl----s 296 (700)
T KOG1156|consen 221 FEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPL----S 296 (700)
T ss_pred HhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccH----H
Confidence 334456778889999999999988765 4445555443 3443344444444 566655442 111111111 1
Q ss_pred HhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH---H-HHHHHhhCC--------------CCChhHHH
Q 046775 408 ACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSID---D-ADRAFSEIP--------------DRGIVSWS 469 (771)
Q Consensus 408 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~---~-A~~~f~~~~--------------~~~~~~~~ 469 (771)
......-.+....++....+.|+++ ++..|...|-.-...+ + +..+...+. .|....|+
T Consensus 297 vl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt 373 (700)
T KOG1156|consen 297 VLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWT 373 (700)
T ss_pred HhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHH
Confidence 1111222333344555556666543 2333333332211111 1 111111111 23345566
Q ss_pred H--HHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHH
Q 046775 470 A--MIGGLAQHGRGKEALQMFGQMLEDGVLPNHI-TLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDIL 546 (771)
Q Consensus 470 ~--li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l 546 (771)
. ++..|-..|+++.|+.+.+..+. -.|..+ -|..-..-+.|+|++++|..+++...+- -.||...-+--+.-.
T Consensus 374 ~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el--D~aDR~INsKcAKYm 449 (700)
T KOG1156|consen 374 LYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL--DTADRAINSKCAKYM 449 (700)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--cchhHHHHHHHHHHH
Confidence 5 56778888999999999999888 467776 4666667889999999999999887643 244544444456677
Q ss_pred hhcCCHHHHHHHHHhCCCCC-C--------HhHHHHHHH--HHHhcCCHHHHHHHH
Q 046775 547 GRAGKFQEAMELVDTMPFQA-N--------ASVWGALLG--AARIYKNVEVGQHAA 591 (771)
Q Consensus 547 ~r~g~~~eA~~~~~~m~~~p-~--------~~~~~~ll~--a~~~~~~~~~a~~~~ 591 (771)
.|+.+.++|.++.....-+- + ...|-.+-. ++...|++.+|.+-+
T Consensus 450 LrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkf 505 (700)
T KOG1156|consen 450 LRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKF 505 (700)
T ss_pred HHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHH
Confidence 89999999998887664111 1 124544432 455566665554433
No 85
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.76 E-value=2.2e-06 Score=79.71 Aligned_cols=195 Identities=18% Similarity=0.125 Sum_probs=144.4
Q ss_pred HHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCCh
Q 046775 405 LLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIP---DRGIVSWSAMIGGLAQHGRG 481 (771)
Q Consensus 405 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~ 481 (771)
+--.|.+.|+...|+.-++.++++. +.+..++..+...|.+.|..+.|.+-|+... ..+-...|....-++..|++
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~ 119 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRP 119 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCCh
Confidence 3445556666666666666666665 5666777788888888888888888888654 34456677777778888899
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHHH
Q 046775 482 KEALQMFGQMLEDGVLPNH-ITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAMELV 559 (771)
Q Consensus 482 ~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~ 559 (771)
++|...|++....-.-|.. .||..+.-+-.++|+.+.|..+|++..+. .|+ ......|.+.....|++-+|..++
T Consensus 120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~---dp~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 120 EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL---DPQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh---CcCCChHHHHHHHHHHhcccchHHHHHH
Confidence 9999999888875433433 47888887788889999999998887743 555 556778888889999999999988
Q ss_pred HhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 046775 560 DTMP--FQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSS 603 (771)
Q Consensus 560 ~~m~--~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~ 603 (771)
+... ..++....--.+..-+..||.+.+-+.-.++.++-|....
T Consensus 197 ~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 197 ERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 8763 3455554444455567788999888888888888886554
No 86
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=3e-07 Score=89.04 Aligned_cols=227 Identities=15% Similarity=0.050 Sum_probs=185.4
Q ss_pred HhHHHHHHHhcCCHHHHHHHHHhcC--CCceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHH-HHHHHhhcc
Q 046775 336 VNSLIDAYGKCGHVEDAVKIFKESS--AVDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCS-SLLNACANL 412 (771)
Q Consensus 336 ~~~Li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~a~~~~ 412 (771)
-+.+..+|.+.|.+.+|.+.|++-. .+-+.||--+-..|.+..+++.|+.+|.+-.+ ..|-.+||. .+.+.+...
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHHHHHH
Confidence 4678899999999999999998754 36778888899999999999999999998876 367777765 566677788
Q ss_pred cchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHH
Q 046775 413 SAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPD---RGIVSWSAMIGGLAQHGRGKEALQMFG 489 (771)
Q Consensus 413 ~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 489 (771)
+..+.+.++++.+.+.. +.++....++...|.-.++++-|.+.|.++.+ .+...|+.+.-+|.-.++++-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 99999999999998876 56677777777888889999999999998774 445678888888888999999999999
Q ss_pred HHHHCCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCC-CCC
Q 046775 490 QMLEDGVLPNHI--TLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMP-FQA 566 (771)
Q Consensus 490 ~m~~~g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p 566 (771)
+.+..--.|+.. .|..+.......|++.-|.+.|+-.... -....+.++.+.-+-.|.|++++|..+++... ..|
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--DAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc--CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 999876667664 4666777777889999999999987643 12236778888888899999999999998763 344
Q ss_pred C
Q 046775 567 N 567 (771)
Q Consensus 567 ~ 567 (771)
+
T Consensus 461 ~ 461 (478)
T KOG1129|consen 461 D 461 (478)
T ss_pred c
Confidence 3
No 87
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.69 E-value=0.00048 Score=75.07 Aligned_cols=539 Identities=13% Similarity=0.090 Sum_probs=281.0
Q ss_pred ChhhHHHHHH--HHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHH-CCC--------CCCcc
Q 046775 29 DEFVANSLVV--MYAKCGNFIDSRRLFDAIPERSVVSWNSLFSCYVHCDFLEEAVCFFKEMVL-SGI--------RPNEF 97 (771)
Q Consensus 29 ~~~~~~~ll~--~y~~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~-~g~--------~p~~~ 97 (771)
|..+--++++ .|..-|+.+.|.+....+. +-..|..|.+.+.+..+.+-|.-.+-.|.. +|. .|+ .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e 801 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-E 801 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence 5556666665 5777899999988777665 445799999999999888888877777653 111 122 2
Q ss_pred hHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHccCCCCC-cccHHHHHHHHHhCC
Q 046775 98 SLSSMINACAGSGDSLLGRKIHGYSIKLGYDSDMFSANALVDMYAKVGNLEDAVAVFKDIEHPD-IVSWNAVIAGCVLHE 176 (771)
Q Consensus 98 t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~-~~~~n~li~~~~~~g 176 (771)
+=.-+.-.....|.+++|+.++.+..+.. .|=..|-..|.+++|.++-+.-..-. ..||..-..-+-..+
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 22222222346788899999998887753 34456777899999998875433211 124444444455567
Q ss_pred ChhHHHHHHHHH----------HhCCC---------CCChhhHHHHHHHhhcCCcHHHHHHHHHHHHHccCCCChhHHHH
Q 046775 177 HNDWALKLFQQM----------KSSEI---------NPNMFTYTSALKACAGMELKELGRQLHCSLIKMEIKSDPIVGVG 237 (771)
Q Consensus 177 ~~~~A~~l~~~m----------~~~g~---------~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~ 237 (771)
+.+.|++.|++- +...+ .-|..-|.---.-.-+.|+.+.|..++..+.. |-+
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs 943 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFS 943 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhh
Confidence 788888777642 22110 11222222222223345666666666554432 345
Q ss_pred HHHhhhcCCChHHHHHHhhhCCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCChh--
Q 046775 238 LVDMYAKCGSMDEARMIFHLMPEKNLIAWNIVISGHLQNGGDMEAASLFPWMYREGVGFDQTTLSTVLKSVASFQAIG-- 315 (771)
Q Consensus 238 Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~-- 315 (771)
++...+-.|+.++|-++-++- .|..+...+...|-..|+..+|+..|.+.+ +|...|+.|-..+--+
T Consensus 944 ~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~L 1012 (1416)
T KOG3617|consen 944 MVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDRL 1012 (1416)
T ss_pred heeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHH
Confidence 666666778888887776654 455667778888889999999999998764 4556666554333211
Q ss_pred -------------HHHHHHHHHHHhcCCCchHHHhHHHHHHHhcCCHHHHHHHHHhcC--------------CCceecHH
Q 046775 316 -------------VCKQVHALSVKTAFESDDYIVNSLIDAYGKCGHVEDAVKIFKESS--------------AVDLVACT 368 (771)
Q Consensus 316 -------------~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--------------~~~~~~~~ 368 (771)
.+.++++ +.|.. ..--+..|-|.|.+.+|+++-=+-. ..|+...+
T Consensus 1013 ~nlal~s~~~d~v~aArYyE---e~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~ 1084 (1416)
T KOG3617|consen 1013 ANLALMSGGSDLVSAARYYE---ELGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLR 1084 (1416)
T ss_pred HHHHhhcCchhHHHHHHHHH---Hcchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHH
Confidence 1222221 11111 1223456777888777776532111 12333344
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHH--HhCCCC---chhHHHHHHHH
Q 046775 369 SMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHII--KFGFMS---DTFAGNSLVNM 443 (771)
Q Consensus 369 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~--~~g~~~---~~~~~~~Li~~ 443 (771)
--..-|+.+.++++|..++...++ |...+..|...+- .-..++-+.|. +.+.++ -..+...+.+.
T Consensus 1085 RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~nv-~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~ 1154 (1416)
T KOG3617|consen 1085 RCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRNV-RVTEEFAELMTPTKDDMPNEQERKQVLEQVAEL 1154 (1416)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCCC-chhHHHHHhcCcCcCCCccHHHHHHHHHHHHHH
Confidence 444455667777777777655442 2333333433221 11111111111 111111 12234445556
Q ss_pred HHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHH-------------HHHHHHCCCCCCHHHHHHHHHHH
Q 046775 444 YAKCGSIDDADRAFSEIPDRGIVSWSAMIGGLAQHGRGKEALQM-------------FGQMLEDGVLPNHITLVSVLCAC 510 (771)
Q Consensus 444 y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l-------------~~~m~~~g~~pd~~t~~~ll~a~ 510 (771)
+.+.|.+..|-+-|-....+ -..+.++.+.|+.++-.-+ -+-++......|+.+...+..-|
T Consensus 1155 c~qQG~Yh~AtKKfTQAGdK-----l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tFY 1229 (1416)
T KOG3617|consen 1155 CLQQGAYHAATKKFTQAGDK-----LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETFY 1229 (1416)
T ss_pred HHhccchHHHHHHHhhhhhH-----HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhhh
Confidence 66666666665555443321 0122333344433321000 00011112233333333333333
Q ss_pred hccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHh-HHHH----------HHHHHH
Q 046775 511 NHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMPFQANAS-VWGA----------LLGAAR 579 (771)
Q Consensus 511 ~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~-~~~~----------ll~a~~ 579 (771)
.+..-+|.--.++..... -..++|...-.++ |-++||.+-+.+...+.+.. .+++ .|...+
T Consensus 1230 TKgqafd~LanFY~~cAq-----iEiee~q~ydKa~---gAl~eA~kCl~ka~~k~~~~t~l~~Lq~~~a~vk~~l~~~q 1301 (1416)
T KOG3617|consen 1230 TKGQAFDHLANFYKSCAQ-----IEIEELQTYDKAM---GALEEAAKCLLKAEQKNMSTTGLDALQEDLAKVKVQLRKLQ 1301 (1416)
T ss_pred hcchhHHHHHHHHHHHHH-----hhHHHHhhhhHHh---HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 333222222222322221 1223333332222 44566666666654332222 2322 233333
Q ss_pred hcC-CHHHHHHHHHHHHhcCCCCc------hhHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 046775 580 IYK-NVEVGQHAAEMLFAIEPEKS------STHVLLSNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 580 ~~~-~~~~a~~~~~~~~~l~p~~~------~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
... |...+.+-.+-+++ +|..+ ..|-+|..-|....+|..|-+..+.|+.+
T Consensus 1302 ~~~eD~~~~i~qc~~lle-ep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1302 IMKEDAADGIRQCTTLLE-EPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKK 1359 (1416)
T ss_pred HhhhhHHHHHHHHHHHhh-CcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhc
Confidence 222 44455555544443 44333 45778899999999999999999999764
No 88
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=0.00017 Score=72.62 Aligned_cols=82 Identities=9% Similarity=0.019 Sum_probs=49.2
Q ss_pred HHHHHHHhhCC--CCC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 046775 451 DDADRAFSEIP--DRG-IVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESME 527 (771)
Q Consensus 451 ~~A~~~f~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 527 (771)
++|..+++.-. +|+ +...+.+...+...|..++++.++++-+. ..||.+-.+.+..-+...+.++++.++|....
T Consensus 421 EKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 421 EKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred HHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 45555555444 233 23455555666666666667777666666 56666666666666666666777776666654
Q ss_pred HhhCCCCCcc
Q 046775 528 KKFGIQPMQE 537 (771)
Q Consensus 528 ~~~~i~p~~~ 537 (771)
.+.|+.+
T Consensus 499 ---r~dP~~~ 505 (564)
T KOG1174|consen 499 ---RQDPKSK 505 (564)
T ss_pred ---hcCccch
Confidence 4455544
No 89
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.60 E-value=0.00028 Score=77.06 Aligned_cols=411 Identities=13% Similarity=0.106 Sum_probs=228.1
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCCChhhH-HHHHHHhhcCCcHHHHHHHHHHHHHccCCCChhHHHHHHHhhhcC---
Q 046775 170 AGCVLHEHNDWALKLFQQMKSSEINPNMFTY-TSALKACAGMELKELGRQLHCSLIKMEIKSDPIVGVGLVDMYAKC--- 245 (771)
Q Consensus 170 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~--- 245 (771)
..+...|++++|++.+..-.. ..+|..++ ......+.+.|+.++|..++..+++.+. .+..-|..|..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhccc
Confidence 345678999999998876433 34454443 4444556677777777777777777663 2334444444444221
Q ss_pred --CChHHHHHHhhhCCCCCe--ehHHHHHHHHHhCCCh-hHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCChhHHHHH
Q 046775 246 --GSMDEARMIFHLMPEKNL--IAWNIVISGHLQNGGD-MEAASLFPWMYREGVGFDQTTLSTVLKSVASFQAIGVCKQV 320 (771)
Q Consensus 246 --g~~~~A~~~f~~m~~~~~--~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i 320 (771)
.+.+....+++++....+ .+.-.+.-.+.....+ ..+...+..+...|+++
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs------------------------ 144 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS------------------------ 144 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch------------------------
Confidence 133444444544433111 1111111111111111 12223333344444322
Q ss_pred HHHHHHhcCCCchHHHhHHHHHHHhcCCHHHHHHHHHhc------------------CCCceecH--HHHHHHHHHcCCh
Q 046775 321 HALSVKTAFESDDYIVNSLIDAYGKCGHVEDAVKIFKES------------------SAVDLVAC--TSMITAYAQFGLG 380 (771)
Q Consensus 321 ~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~------------------~~~~~~~~--~~li~~~~~~g~~ 380 (771)
+++.|-..|....+.+-..+++... ..|....| .-+...|-..|++
T Consensus 145 --------------lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~ 210 (517)
T PF12569_consen 145 --------------LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDY 210 (517)
T ss_pred --------------HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCH
Confidence 2333333333333332222332221 11333334 4557778899999
Q ss_pred HHHHHHHHHHhcCCCCCC-HhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 046775 381 EEALKLYLEMQDREINPD-SFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSE 459 (771)
Q Consensus 381 ~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 459 (771)
++|++..++.++. .|+ ...|..-...+-+.|++.+|....+.+.... ..|..+-+-.+..+.++|++++|.+++..
T Consensus 211 ~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~ 287 (517)
T PF12569_consen 211 EKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASL 287 (517)
T ss_pred HHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 9999999988875 565 4566777788889999999999999998877 67888888899999999999999999988
Q ss_pred CCCCCh----------hHHH--HHHHHHHHcCChHHHHHHHHHHHHC--CCCCC-------------HHHHHHHHHHHhc
Q 046775 460 IPDRGI----------VSWS--AMIGGLAQHGRGKEALQMFGQMLED--GVLPN-------------HITLVSVLCACNH 512 (771)
Q Consensus 460 ~~~~~~----------~~~~--~li~~~~~~g~~~~A~~l~~~m~~~--g~~pd-------------~~t~~~ll~a~~~ 512 (771)
..+++. ..|- .-..+|.+.|++..|+..|....+. .+.-| ..+|..+|.-.-+
T Consensus 288 Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~ 367 (517)
T PF12569_consen 288 FTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDK 367 (517)
T ss_pred hcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHH
Confidence 776552 2343 3467889999999998888776542 12222 2234444433221
Q ss_pred cCc-------HHHHHHHHHHHHHhhCCCCCcch-----------HHHHHHHH---hhcCCHHHHHHHHH-----------
Q 046775 513 AGL-------VAEAKHHFESMEKKFGIQPMQEH-----------YACMIDIL---GRAGKFQEAMELVD----------- 560 (771)
Q Consensus 513 ~g~-------~~~a~~~~~~m~~~~~i~p~~~~-----------y~~lv~~l---~r~g~~~eA~~~~~----------- 560 (771)
... ...|++++-.+............ -.-+-.-. .+....+++...-.
T Consensus 368 l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~ 447 (517)
T PF12569_consen 368 LRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSK 447 (517)
T ss_pred hhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhcccc
Confidence 111 12344444444322111100000 00000000 11111122221110
Q ss_pred ----hCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHH
Q 046775 561 ----TMPFQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRR 626 (771)
Q Consensus 561 ----~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 626 (771)
.-|.++|....+.-|. ....=++.|.+.++.+.+..|++..+|.+--.+|.+.|++--|.+-.+
T Consensus 448 ~~~~~~~~~~D~Dp~GekL~--~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~ 515 (517)
T PF12569_consen 448 KKEKVEPKKKDDDPLGEKLL--KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALK 515 (517)
T ss_pred ccccccCCcCCCCccHHHHh--cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHH
Confidence 0122223322222221 233457889999999999999999999999999999999988776543
No 90
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.57 E-value=6.3e-05 Score=80.22 Aligned_cols=291 Identities=11% Similarity=-0.067 Sum_probs=160.2
Q ss_pred HhHHHHHHHhcCCHHHHHHHHHhcC---CCceec---HHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHh-hHHH---H
Q 046775 336 VNSLIDAYGKCGHVEDAVKIFKESS---AVDLVA---CTSMITAYAQFGLGEEALKLYLEMQDREINPDSF-VCSS---L 405 (771)
Q Consensus 336 ~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~---l 405 (771)
+..+...|...|+.+.+.+.+.... ..+... .......+...|++++|.+.+++..+. .|+.. .+.. .
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~ 86 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHH
Confidence 3444455555566666554444322 122221 112233456677888888888877664 34332 2221 1
Q ss_pred HHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChH
Q 046775 406 LNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIP---DRGIVSWSAMIGGLAQHGRGK 482 (771)
Q Consensus 406 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~ 482 (771)
.......+....+.+..... ....+........+...+...|++++|...+++.. ..+...+..+...|...|+++
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 11111233444444443331 11112233344455667788888888888888765 334566777778888888888
Q ss_pred HHHHHHHHHHHCCC-CCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHH------HHHHHHhhcCCHH
Q 046775 483 EALQMFGQMLEDGV-LPNH--ITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYA------CMIDILGRAGKFQ 553 (771)
Q Consensus 483 ~A~~l~~~m~~~g~-~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~------~lv~~l~r~g~~~ 553 (771)
+|+.++++.....- .|+. ..+..+...+...|+.++|..+++..... .|...... .+...+...|..+
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP---SAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc---ccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 88888888776421 1232 23445666777888888888888886432 23111111 2233334444333
Q ss_pred HHHHH---HHhC-CCCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-C--------CCchhHHHHHHHHHhcCC
Q 046775 554 EAMEL---VDTM-PFQAN---ASVWGALLGAARIYKNVEVGQHAAEMLFAIE-P--------EKSSTHVLLSNIYASAGM 617 (771)
Q Consensus 554 eA~~~---~~~m-~~~p~---~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~-p--------~~~~~~~~l~~~y~~~g~ 617 (771)
.+.++ ...- +..|+ .........++...|+.+.|....+.+.... + ......++.+.++...|+
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~ 322 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGN 322 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCC
Confidence 33322 1111 11111 1122234445566778888888887775532 1 134556788899999999
Q ss_pred chhHHHHHHHHHhCC
Q 046775 618 WDNVAKVRRFMKDNK 632 (771)
Q Consensus 618 ~~~a~~~~~~m~~~g 632 (771)
+++|.+........+
T Consensus 323 ~~~A~~~L~~al~~a 337 (355)
T cd05804 323 YATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999877766554
No 91
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.53 E-value=0.00039 Score=74.24 Aligned_cols=215 Identities=12% Similarity=0.062 Sum_probs=110.0
Q ss_pred CcHHHHHHHHHHHHHccCCCChhHHHHHHHhhhcCCChHHHHHHhhhCCC---CCeehHHHHHHHHHhCCChhHHHHHHH
Q 046775 211 ELKELGRQLHCSLIKMEIKSDPIVGVGLVDMYAKCGSMDEARMIFHLMPE---KNLIAWNIVISGHLQNGGDMEAASLFP 287 (771)
Q Consensus 211 ~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 287 (771)
+++..+....+.+++ +.+....+.....-.....|+.++|......-.. ++.+.|..+.-.+-...++++|++.|+
T Consensus 21 kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~ 99 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYR 99 (700)
T ss_pred HHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHH
Confidence 445555555555554 2222222222222223455777777766665544 566788888777777788999999998
Q ss_pred HHHHCCCCCCHhhHHHHHHHHhccCChhHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcCCHHHHHHHHHh---cCCCce
Q 046775 288 WMYREGVGFDQTTLSTVLKSVASFQAIGVCKQVHALSVKTAFESDDYIVNSLIDAYGKCGHVEDAVKIFKE---SSAVDL 364 (771)
Q Consensus 288 ~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~---~~~~~~ 364 (771)
.....+ ||. ..++.-|.-.-++.|+++.....-.+ ......
T Consensus 100 nAl~~~--~dN----------------------------------~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~r 143 (700)
T KOG1156|consen 100 NALKIE--KDN----------------------------------LQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQR 143 (700)
T ss_pred HHHhcC--CCc----------------------------------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhH
Confidence 887653 332 22222222222233333333222222 122344
Q ss_pred ecHHHHHHHHHHcCChHHHHHHHHHHhcCC-CCCCHhhHHHHHH------HhhcccchHHHHHHHHHHHHhCCCCchhHH
Q 046775 365 VACTSMITAYAQFGLGEEALKLYLEMQDRE-INPDSFVCSSLLN------ACANLSAYEQGKQVHVHIIKFGFMSDTFAG 437 (771)
Q Consensus 365 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~------a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~ 437 (771)
..|.....++--.|+...|..+.++..+.. -.|+...+.-... .....|.++.+.+.+....+. +......-
T Consensus 144 a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~ 222 (700)
T KOG1156|consen 144 ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFE 222 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHh
Confidence 566666666666777777777776665533 2344444332221 123344555555444433221 11122223
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCC
Q 046775 438 NSLVNMYAKCGSIDDADRAFSEIPDR 463 (771)
Q Consensus 438 ~~Li~~y~k~g~~~~A~~~f~~~~~~ 463 (771)
..-.+.+.+.|++++|..++..+..+
T Consensus 223 e~ka~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 223 ETKADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred hhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence 33456667777777777777766643
No 92
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=0.00022 Score=74.60 Aligned_cols=214 Identities=11% Similarity=0.101 Sum_probs=144.2
Q ss_pred HHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh----------hHHHHHH
Q 046775 403 SSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPDRGI----------VSWSAMI 472 (771)
Q Consensus 403 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~----------~~~~~li 472 (771)
.-+.++.-+..+++.+.+-+...+... .+..-++.....|...|.+.+....-+...+.+- .+...+.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 344455555566677777777666655 5555566777778888877776666555443331 1222344
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCc--chHHHHHHHHhhcC
Q 046775 473 GGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQ--EHYACMIDILGRAG 550 (771)
Q Consensus 473 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~--~~y~~lv~~l~r~g 550 (771)
.+|.+.++++.|+..|++.+..-..||..+ .....+++....+... -+.|.. +--.+ ..-+.+.|
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~k-Gne~Fk~g 372 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREK-GNEAFKKG 372 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHH-HHHHHhcc
Confidence 567777888999999988776544554432 1233444444444332 234442 11222 55677889
Q ss_pred CHHHHHHHHHhC-CCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHH
Q 046775 551 KFQEAMELVDTM-PFQANA-SVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFM 628 (771)
Q Consensus 551 ~~~eA~~~~~~m-~~~p~~-~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 628 (771)
++.+|...+.++ ...|+. ..|.....++...+++..|..-++..++++|+....|..-+-++....+|++|.+.+...
T Consensus 373 dy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999887 356754 467777667778899999999999999999999999999999999999999999888866
Q ss_pred HhC
Q 046775 629 KDN 631 (771)
Q Consensus 629 ~~~ 631 (771)
.+.
T Consensus 453 le~ 455 (539)
T KOG0548|consen 453 LEL 455 (539)
T ss_pred Hhc
Confidence 654
No 93
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.53 E-value=4.7e-06 Score=84.54 Aligned_cols=248 Identities=13% Similarity=0.098 Sum_probs=122.6
Q ss_pred HHhcCCHHHHHHHHH--hcCC-CceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHH
Q 046775 343 YGKCGHVEDAVKIFK--ESSA-VDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGK 419 (771)
Q Consensus 343 y~k~g~~~~A~~~f~--~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 419 (771)
+.-.|.+..+..-.+ ...+ .+.....-+..+|...|+++.++. +..... .|....+..+...+....+-+...
T Consensus 11 ~fy~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 11 QFYLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HHCTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHHhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHHH
Confidence 344566666664443 1111 122334445666666776654442 232222 444444433333333322222222
Q ss_pred HHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 046775 420 QVHVHIIKFGFM-SDTFAGNSLVNMYAKCGSIDDADRAFSEIPDRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLP 498 (771)
Q Consensus 420 ~i~~~~~~~g~~-~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 498 (771)
.-+......... .+..+......+|...|++++|.+++... .+....-..+..|.+.++++.|.+.++.|.+ +..
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~e 162 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDE 162 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSC
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCC
Confidence 222221111111 23333333334555666666666666554 3334444455566666666666666666665 233
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHhHHHHHHH
Q 046775 499 NHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMP--FQANASVWGALLG 576 (771)
Q Consensus 499 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~--~~p~~~~~~~ll~ 576 (771)
|. +...+..|+ |.+..-.+.+.+|.-+|+++. +.+++.+++.+..
T Consensus 163 D~-~l~qLa~aw--------------------------------v~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~ 209 (290)
T PF04733_consen 163 DS-ILTQLAEAW--------------------------------VNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAV 209 (290)
T ss_dssp CH-HHHHHHHHH--------------------------------HHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHH
T ss_pred cH-HHHHHHHHH--------------------------------HHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 32 222233322 222211234555555555542 2345556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCc-hhHHHHHHHHHhC
Q 046775 577 AARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMW-DNVAKVRRFMKDN 631 (771)
Q Consensus 577 a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~-~~a~~~~~~m~~~ 631 (771)
+.-..|++++|+..++.+++.+|+|+.+...++-+....|+. +.+.+....++..
T Consensus 210 ~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 210 CHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 666777777788878888888888888888888788888888 5566677766653
No 94
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.51 E-value=0.0014 Score=73.39 Aligned_cols=192 Identities=11% Similarity=-0.031 Sum_probs=100.5
Q ss_pred eehHHHHHHHHHh----CC----ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCChhHHHHHHHHHHHhcC-CCch
Q 046775 263 LIAWNIVISGHLQ----NG----GDMEAASLFPWMYREGVGFDQTTLSTVLKSVASFQAIGVCKQVHALSVKTAF-ESDD 333 (771)
Q Consensus 263 ~~~~~~li~~~~~----~g----~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~-~~~~ 333 (771)
..+|..++..|.+ .| +...|+..+.+-.+. ..+...+-..|...+..|++. ...|..+...-. +...
T Consensus 775 ~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVlsg~gnva--~aQHCfIks~~sep~~~ 850 (1238)
T KOG1127|consen 775 MYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVLSGIGNVA--CAQHCFIKSRFSEPTCH 850 (1238)
T ss_pred cchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHhhccchhh--hhhhhhhhhhhccccch
Confidence 5567666665544 11 223566666665543 234444444455553334433 334444444332 4455
Q ss_pred HHHhHHHHHHHhcCCHHHHHHHHHhcCC---CceecHHHHHHHHHHcCChHHHHHHHHHHh----cCCCCCCHhhHHHHH
Q 046775 334 YIVNSLIDAYGKCGHVEDAVKIFKESSA---VDLVACTSMITAYAQFGLGEEALKLYLEMQ----DREINPDSFVCSSLL 406 (771)
Q Consensus 334 ~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~----~~g~~p~~~t~~~ll 406 (771)
.+|..+.-.+.+..+++.|...|..... .|.+.|--+...-...|+.-+++.+|..-- ..|-.|+..-+....
T Consensus 851 ~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~t 930 (1238)
T KOG1127|consen 851 CQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCAT 930 (1238)
T ss_pred hheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHH
Confidence 6777777788888888888888876553 466777666666666777777777776621 123233333232222
Q ss_pred HHhhcccchHH----------HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 046775 407 NACANLSAYEQ----------GKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSE 459 (771)
Q Consensus 407 ~a~~~~~~~~~----------a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 459 (771)
.-..+.|+.+. |.-...+... +.+.+.+.|.+.....-..+...+|.+...+
T Consensus 931 e~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~R 992 (1238)
T KOG1127|consen 931 EIHLQNGNIEESINTARKISSASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATR 992 (1238)
T ss_pred HHHHhccchHHHHHHhhhhhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 22233333221 1111222222 3345555666655555555555555555544
No 95
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.50 E-value=0.0057 Score=74.18 Aligned_cols=225 Identities=13% Similarity=0.067 Sum_probs=119.0
Q ss_pred HhhcccchHHHHHHHHHHHHh----CC-CCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------CC----hhHHHHH
Q 046775 408 ACANLSAYEQGKQVHVHIIKF----GF-MSDTFAGNSLVNMYAKCGSIDDADRAFSEIPD-------RG----IVSWSAM 471 (771)
Q Consensus 408 a~~~~~~~~~a~~i~~~~~~~----g~-~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-------~~----~~~~~~l 471 (771)
.+...|+++.|...+...... |- .........+...+...|++++|...+++... ++ ...+..+
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 334455555555555544322 10 01112334445556666666666666554321 01 1223334
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC--CCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHH-----HH
Q 046775 472 IGGLAQHGRGKEALQMFGQMLED--GVLPNH--ITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYA-----CM 542 (771)
Q Consensus 472 i~~~~~~g~~~~A~~l~~~m~~~--g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~-----~l 542 (771)
...+...|++++|...+++.... ...|.. .++..+.......|+.++|...+...............+. ..
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 659 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVR 659 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHH
Confidence 44555567777777777766542 111221 2333344455667777777777776654321111111110 11
Q ss_pred HHHHhhcCCHHHHHHHHHhCCC-C-CCH----hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CCchhHHHHHH
Q 046775 543 IDILGRAGKFQEAMELVDTMPF-Q-ANA----SVWGALLGAARIYKNVEVGQHAAEMLFAIEP------EKSSTHVLLSN 610 (771)
Q Consensus 543 v~~l~r~g~~~eA~~~~~~m~~-~-p~~----~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p------~~~~~~~~l~~ 610 (771)
...+...|+.++|.+++..... . ... ..+..+..+....|+.+.|...++++++... +...++..++.
T Consensus 660 ~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~ 739 (903)
T PRK04841 660 LIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQ 739 (903)
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 2334557788888887766531 1 111 1133444455667888888888888776521 22345677888
Q ss_pred HHHhcCCchhHHHHHHHHHhCC
Q 046775 611 IYASAGMWDNVAKVRRFMKDNK 632 (771)
Q Consensus 611 ~y~~~g~~~~a~~~~~~m~~~g 632 (771)
+|...|+.++|...+....+..
T Consensus 740 a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 740 LYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 8888888888888777666543
No 96
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.50 E-value=0.00018 Score=70.70 Aligned_cols=306 Identities=12% Similarity=0.077 Sum_probs=165.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHH---HHhccCChhHHHHHHHHHHHhcCCCchHHH-hHHHHHHH
Q 046775 269 VISGHLQNGGDMEAASLFPWMYREGVGFDQTTLSTVLK---SVASFQAIGVCKQVHALSVKTAFESDDYIV-NSLIDAYG 344 (771)
Q Consensus 269 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~---a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~-~~Li~~y~ 344 (771)
+...+...|++..|+.-|....+- |+..|..+.+ .|...|....|..=+..++.. .||-... -.-...+.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhh
Confidence 455667778888888888776543 3333433332 334445444444444444432 3432211 11223456
Q ss_pred hcCCHHHHHHHHHhcCCCceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHH
Q 046775 345 KCGHVEDAVKIFKESSAVDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVH 424 (771)
Q Consensus 345 k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 424 (771)
|.|.++.|..-|+.....++.- +....++.+. .+.+++. .....+..+...|+...+......
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl-------~~~~e~~---------~l~~ql~s~~~~GD~~~ai~~i~~ 180 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSN-GLVLEAQSKL-------ALIQEHW---------VLVQQLKSASGSGDCQNAIEMITH 180 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCc-chhHHHHHHH-------HhHHHHH---------HHHHHHHHHhcCCchhhHHHHHHH
Confidence 6777777777766654432210 0111111111 1111111 122334445566788888888888
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhC---CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 046775 425 IIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEI---PDRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHI 501 (771)
Q Consensus 425 ~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 501 (771)
+++.. +.|...+..-..+|...|.+..|..-+... ...+....--+-..+...|+.+.++...++.++ +.||+-
T Consensus 181 llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK 257 (504)
T KOG0624|consen 181 LLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHK 257 (504)
T ss_pred HHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchh
Confidence 87765 678888888899999999999997666544 355666666777788889999999999999888 778874
Q ss_pred H-HHHH----------H--HHHhccCcHHHHHHHHHHHHHhhCCCCC-----cchHHHHHHHHhhcCCHHHHHHHHHhC-
Q 046775 502 T-LVSV----------L--CACNHAGLVAEAKHHFESMEKKFGIQPM-----QEHYACMIDILGRAGKFQEAMELVDTM- 562 (771)
Q Consensus 502 t-~~~l----------l--~a~~~~g~~~~a~~~~~~m~~~~~i~p~-----~~~y~~lv~~l~r~g~~~eA~~~~~~m- 562 (771)
. |... - ......+.+.++++-.++..+. +|. ...+..+-..+...|++-||++.-.+.
T Consensus 258 ~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL 334 (504)
T KOG0624|consen 258 LCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL 334 (504)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHH
Confidence 2 2110 0 0112233333343333333321 333 122333334445555555555554443
Q ss_pred CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 046775 563 PFQAN-ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSS 603 (771)
Q Consensus 563 ~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~ 603 (771)
.+.|| +.++.--..|+..-..++.|..-++++.+++|+|..
T Consensus 335 ~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 335 DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHH
Confidence 24444 334444455555555555555555555555555443
No 97
>PF12854 PPR_1: PPR repeat
Probab=98.46 E-value=1.8e-07 Score=60.38 Aligned_cols=34 Identities=29% Similarity=0.483 Sum_probs=28.8
Q ss_pred hCCCCChhhHHHHHHHHHcCCChHHHHHHHhcCC
Q 046775 24 TGFDSDEFVANSLVVMYAKCGNFIDSRRLFDAIP 57 (771)
Q Consensus 24 ~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~ 57 (771)
.|+.||.++||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3778888888888888888888888888888875
No 98
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.46 E-value=3.4e-06 Score=76.31 Aligned_cols=123 Identities=12% Similarity=0.055 Sum_probs=92.4
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhCC
Q 046775 485 LQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAMELVDTMP 563 (771)
Q Consensus 485 ~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~ 563 (771)
..+|++.++ +.|+. +.....++...|++++|..+|+.... +.|+ ...|..+..++.+.|++++|...+++.-
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345566655 45664 44556677788888888888888763 3554 6677788888888888888888888773
Q ss_pred -CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 046775 564 -FQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYAS 614 (771)
Q Consensus 564 -~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 614 (771)
..| +...|..+..++...|+.+.|...+++++++.|+++..+..++++...
T Consensus 86 ~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 455 445777777788888999999999999999999999998888776543
No 99
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.44 E-value=0.0001 Score=80.47 Aligned_cols=286 Identities=13% Similarity=0.055 Sum_probs=167.0
Q ss_pred HhhhcCCChHHHHHHhhhCCC--CCeehH-HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHh----c--
Q 046775 240 DMYAKCGSMDEARMIFHLMPE--KNLIAW-NIVISGHLQNGGDMEAASLFPWMYREGVGFDQTTLSTVLKSVA----S-- 310 (771)
Q Consensus 240 ~~y~~~g~~~~A~~~f~~m~~--~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~----~-- 310 (771)
..+...|+.++|...++.-.. .|..+| ......+.+.|+.++|..+++.+...+ ||...|-..+..|. .
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 345677888888888877544 454444 445667788899999999999888864 77777776666665 1
Q ss_pred cCChhHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcCCHH-HHHHHHHhcCCCce-ecHHHHHHHHHHcCChHHHHHHHH
Q 046775 311 FQAIGVCKQVHALSVKTAFESDDYIVNSLIDAYGKCGHVE-DAVKIFKESSAVDL-VACTSMITAYAQFGLGEEALKLYL 388 (771)
Q Consensus 311 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~-~A~~~f~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~ 388 (771)
..+.+...++++.+...- |......-+.-.+.....+. .+......+..+.+ .+++.+-.-|......+-..+++.
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence 123455556666554332 11111111111111111111 12222233333343 445555555554444444444444
Q ss_pred HHhcC----C----------CCCCH--hhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 046775 389 EMQDR----E----------INPDS--FVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDD 452 (771)
Q Consensus 389 ~m~~~----g----------~~p~~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~ 452 (771)
..... + -.|.. .++..+...+...|++++|....+.++.+. |..+..|..-...|-+.|++++
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHH
Confidence 44321 1 12222 233444555667888888888888887775 4446777777888888888888
Q ss_pred HHHHHhhCCCCCh---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH--------HHHHHHHHhccCcHHHHHH
Q 046775 453 ADRAFSEIPDRGI---VSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHIT--------LVSVLCACNHAGLVAEAKH 521 (771)
Q Consensus 453 A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t--------~~~ll~a~~~~g~~~~a~~ 521 (771)
|.+..+....-|. ..-+-.+..+.+.|+.++|.+++......+..|-... .+-...||.+.|++..|++
T Consensus 247 Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk 326 (517)
T PF12569_consen 247 AAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALK 326 (517)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 8888877664443 3444556667788888888888887777665443211 1334556777788888877
Q ss_pred HHHHHHHhh
Q 046775 522 HFESMEKKF 530 (771)
Q Consensus 522 ~~~~m~~~~ 530 (771)
.|..+.+.|
T Consensus 327 ~~~~v~k~f 335 (517)
T PF12569_consen 327 RFHAVLKHF 335 (517)
T ss_pred HHHHHHHHH
Confidence 777665543
No 100
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.42 E-value=0.0041 Score=65.27 Aligned_cols=173 Identities=12% Similarity=0.082 Sum_probs=115.4
Q ss_pred hHHHHHHHHHHhcCC-CCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHH
Q 046775 380 GEEALKLYLEMQDRE-INPDSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMS-DTFAGNSLVNMYAKCGSIDDADRAF 457 (771)
Q Consensus 380 ~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~Li~~y~k~g~~~~A~~~f 457 (771)
.+...+.++++...- ..| ..+|...++..-+..-+..|+.+|..+.+.+..+ ++.++++++..|+ .++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 444555555554422 223 2456666777777777888888888887776666 7788888888776 46777788888
Q ss_pred hhCC--CCC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHHHHhhC-
Q 046775 458 SEIP--DRG-IVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHI--TLVSVLCACNHAGLVAEAKHHFESMEKKFG- 531 (771)
Q Consensus 458 ~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~- 531 (771)
+--. -.| ..--+..+.-+...++-..|..+|++.+..++.||.. .|..+|.-=+.-|++....++=+++...|.
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 7544 223 3334455666667777778888888888777677653 677777777777888888777777766665
Q ss_pred -CCCCcchHHHHHHHHhhcCCHHH
Q 046775 532 -IQPMQEHYACMIDILGRAGKFQE 554 (771)
Q Consensus 532 -i~p~~~~y~~lv~~l~r~g~~~e 554 (771)
.+|...+-..+++.|+=.+....
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred hhcCCCChHHHHHHHHhhcccccc
Confidence 55555666666777765555443
No 101
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.42 E-value=2e-05 Score=78.45 Aligned_cols=181 Identities=13% Similarity=0.044 Sum_probs=119.7
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-h---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----
Q 046775 432 SDTFAGNSLVNMYAKCGSIDDADRAFSEIPD--RG-I---VSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHI---- 501 (771)
Q Consensus 432 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~---- 501 (771)
.....+..+...|.+.|++++|...|+++.. |+ . .+|..+...|.+.|++++|+..++++.+ ..|+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHH
Confidence 3455666777777888888888888876652 22 1 3566777788888888888888888877 344322
Q ss_pred HHHHHHHHHhcc--------CcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHH
Q 046775 502 TLVSVLCACNHA--------GLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMPFQANASVWGA 573 (771)
Q Consensus 502 t~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ 573 (771)
++..+..++... |+.++|.+.|+.+.+. .|+..... .++.+.+....... .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~---~a~~~~~~~~~~~~-----------~~~~~ 171 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAP---DAKKRMDYLRNRLA-----------GKELY 171 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHH---HHHHHHHHHHHHHH-----------HHHHH
Confidence 344444455543 6777788888777754 34432211 11111111111100 01124
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 046775 574 LLGAARIYKNVEVGQHAAEMLFAIEPEK---SSTHVLLSNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 574 ll~a~~~~~~~~~a~~~~~~~~~l~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
+...+...|+.+.|...++++++..|++ +.++..++.+|...|++++|....+.+..+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4456678899999999999999997765 478999999999999999999998887665
No 102
>PF12854 PPR_1: PPR repeat
Probab=98.41 E-value=3.5e-07 Score=59.01 Aligned_cols=33 Identities=39% Similarity=0.598 Sum_probs=22.9
Q ss_pred CCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCC
Q 046775 531 GIQPMQEHYACMIDILGRAGKFQEAMELVDTMP 563 (771)
Q Consensus 531 ~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~ 563 (771)
|+.||..+|++||+.|++.|++++|.+++++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566777777777777777777777777776664
No 103
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.41 E-value=6.9e-06 Score=88.35 Aligned_cols=220 Identities=16% Similarity=0.093 Sum_probs=141.5
Q ss_pred CCCchHHHhHHHHHHHhcCCHHHHHHHHHhcCCCceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHH
Q 046775 329 FESDDYIVNSLIDAYGKCGHVEDAVKIFKESSAVDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNA 408 (771)
Q Consensus 329 ~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 408 (771)
++|--.....+...+.++|-...|..+|+++ ..|.-.|.+|...|+..+|..+.++-.+ -
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k------------- 453 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--K------------- 453 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--C-------------
Confidence 4455555666777778888888888888775 3466677777777777777777666654 2
Q ss_pred hhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHH
Q 046775 409 CANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPDRGIVSWSAMIGGLAQHGRGKEALQMF 488 (771)
Q Consensus 409 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 488 (771)
+||+..|..|.|.....--+++|.++++....+--..|+..+ ...++++++.+.|
T Consensus 454 ----------------------~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~---~~~~~fs~~~~hl 508 (777)
T KOG1128|consen 454 ----------------------DPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLI---LSNKDFSEADKHL 508 (777)
T ss_pred ----------------------CCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhcccc---ccchhHHHHHHHH
Confidence 344555555555554444556666666655433222232222 2367788888888
Q ss_pred HHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhCC-C-
Q 046775 489 GQMLEDGVLPNH-ITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAMELVDTMP-F- 564 (771)
Q Consensus 489 ~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~- 564 (771)
+.-.+ +.|=. .||.....+..+.++++.+.+.|.... ...|+ .+.|+.+..+|.+.|+..+|...+++.- .
T Consensus 509 e~sl~--~nplq~~~wf~~G~~ALqlek~q~av~aF~rcv---tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 509 ERSLE--INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCV---TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHhh--cCccchhHHHhccHHHHHHhhhHHHHHHHHHHh---hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 87766 44433 477777777778888888888888766 34565 5667777777777777777776666652 2
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 046775 565 QANASVWGALLGAARIYKNVEVGQHAAEMLFAIE 598 (771)
Q Consensus 565 ~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~ 598 (771)
.-+..+|....-..-.-|+.+.|.+++.+++.+.
T Consensus 584 ~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 584 YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 2233466666666667777777777777777653
No 104
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=0.00062 Score=71.33 Aligned_cols=166 Identities=15% Similarity=0.123 Sum_probs=113.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHH
Q 046775 440 LVNMYAKCGSIDDADRAFSEIPDRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHI-TLVSVLCACNHAGLVAE 518 (771)
Q Consensus 440 Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~ 518 (771)
+...|.+.++++.|...|.+...+-.. -....+....++++...+...- +.|+.. -...-...+.+.|++..
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHH
Confidence 445777778888888888875421110 0111223334555555555444 445543 22333667788899999
Q ss_pred HHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046775 519 AKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAMELVDTM-PFQANAS-VWGALLGAARIYKNVEVGQHAAEMLF 595 (771)
Q Consensus 519 a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~ 595 (771)
|+..+.++.+. .|+ ...|+.-.-+|.+.|.+.+|++--+.. ...|+.. .|.--..+.+.-++.+.|..++++.+
T Consensus 377 Av~~YteAIkr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 377 AVKHYTEAIKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988764 454 777888888899999988888765544 3466554 55555666677789999999999999
Q ss_pred hcCCCCchhHHHHHHHHHhc
Q 046775 596 AIEPEKSSTHVLLSNIYASA 615 (771)
Q Consensus 596 ~l~p~~~~~~~~l~~~y~~~ 615 (771)
+++|++......+..++...
T Consensus 454 e~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 454 ELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred hcCchhHHHHHHHHHHHHHh
Confidence 99999998888888777764
No 105
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.39 E-value=0.0037 Score=68.47 Aligned_cols=222 Identities=12% Similarity=0.073 Sum_probs=137.7
Q ss_pred hhcCCCchhHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCChHHHHHHHhcCCC-C----------CcchHHHHHH-HHH
Q 046775 5 CTSKKDLFLGLQVHGIVVFTGFDSDEFVANSLVVMYAKCGNFIDSRRLFDAIPE-R----------SVVSWNSLFS-CYV 72 (771)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~-~----------~~~~~n~li~-~~~ 72 (771)
|...|+++.|.+--..+ .+..+|..+..|+.+..+++-|...+-.|.. + |..--.+-.. .-.
T Consensus 738 yvtiG~MD~AfksI~~I------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAi 811 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFI------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAI 811 (1416)
T ss_pred EEEeccHHHHHHHHHHH------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHH
Confidence 34457777665543222 2567899999999999999888887777753 1 1111111111 224
Q ss_pred hCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHH
Q 046775 73 HCDFLEEAVCFFKEMVLSGIRPNEFSLSSMINACAGSGDSLLGRKIHGYSIKLGYDSDMFSANALVDMYAKVGNLEDAVA 152 (771)
Q Consensus 73 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~ 152 (771)
+.|..++|+.+|++-.+. ..+=+.|-..|.+.+|.++-+.--+-.+.. +|-.-..-+-..++.+.|++
T Consensus 812 eLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~---Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRN---TYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred HHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhh---hHHHHHHHHHhhccHHHHHH
Confidence 568889999999887653 334445556788888887765433222221 22222333334566777777
Q ss_pred HHccCCC-----------------------CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhc
Q 046775 153 VFKDIEH-----------------------PDIVSWNAVIAGCVLHEHNDWALKLFQQMKSSEINPNMFTYTSALKACAG 209 (771)
Q Consensus 153 ~f~~~~~-----------------------~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 209 (771)
.|++... +|...|.-.-.-+-..|+.+.|+.+|...++ |-++.+..+-
T Consensus 880 yyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~ 950 (1416)
T KOG3617|consen 880 YYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCI 950 (1416)
T ss_pred HHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEee
Confidence 7765432 2333344444444456888888888887653 4556666677
Q ss_pred CCcHHHHHHHHHHHHHccCCCChhHHHHHHHhhhcCCChHHHHHHhhhCC
Q 046775 210 MELKELGRQLHCSLIKMEIKSDPIVGVGLVDMYAKCGSMDEARMIFHLMP 259 (771)
Q Consensus 210 ~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 259 (771)
.|+.++|-++-++- .|....--|..+|-..|++.+|...|-+..
T Consensus 951 qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 951 QGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 78888887775532 255556668888888899988888887654
No 106
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.39 E-value=0.0037 Score=75.79 Aligned_cols=194 Identities=10% Similarity=0.037 Sum_probs=111.0
Q ss_pred HhHHHHHHHhcCCHHHHHHHHHhcCC-------Cc----eecHHHHHHHHHHcCChHHHHHHHHHHhcC--CCCCC--Hh
Q 046775 336 VNSLIDAYGKCGHVEDAVKIFKESSA-------VD----LVACTSMITAYAQFGLGEEALKLYLEMQDR--EINPD--SF 400 (771)
Q Consensus 336 ~~~Li~~y~k~g~~~~A~~~f~~~~~-------~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~--~~ 400 (771)
...+...+...|+++.|...+++... ++ ...+..+...+...|++++|...+.+.... ...+. ..
T Consensus 534 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 613 (903)
T PRK04841 534 LLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQ 613 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHH
Confidence 34445556666777666666554221 11 112233344555667777777777765442 11121 22
Q ss_pred hHHHHHHHhhcccchHHHHHHHHHHHHhC--CCCch----hHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh-------hH
Q 046775 401 VCSSLLNACANLSAYEQGKQVHVHIIKFG--FMSDT----FAGNSLVNMYAKCGSIDDADRAFSEIPDRGI-------VS 467 (771)
Q Consensus 401 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g--~~~~~----~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~-------~~ 467 (771)
.+..+.......|+.+.|...+..+.... ..... ......+..+...|+.+.|.+.+.....+.. ..
T Consensus 614 ~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 693 (903)
T PRK04841 614 CLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQ 693 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHH
Confidence 33334445566777777777776664321 11000 0011122445567888998888876653321 11
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 046775 468 WSAMIGGLAQHGRGKEALQMFGQMLED----GVLPNH-ITLVSVLCACNHAGLVAEAKHHFESMEKK 529 (771)
Q Consensus 468 ~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 529 (771)
+..+..++...|++++|...+++.... |..++. .+...+..++...|+.++|...+.+..+.
T Consensus 694 ~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 694 WRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345666788889999999988887653 333332 24556666778888888888888887754
No 107
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.38 E-value=1.5e-05 Score=80.90 Aligned_cols=214 Identities=15% Similarity=0.107 Sum_probs=120.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCceecHHHHHHHHHHc-CChHHHHHHHHHHhcCCCCC-CHhhHHHHHHHhhcccch
Q 046775 338 SLIDAYGKCGHVEDAVKIFKESSAVDLVACTSMITAYAQF-GLGEEALKLYLEMQDREINP-DSFVCSSLLNACANLSAY 415 (771)
Q Consensus 338 ~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~ 415 (771)
-+.+.|...|+.+.+..-...-..|.......+ ..|... +.-+.++.-+.+.......+ +..........+...|++
T Consensus 40 ~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~l-a~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~ 118 (290)
T PF04733_consen 40 YQYRSYIALGQYDSVLSEIKKSSSPELQAVRLL-AEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDY 118 (290)
T ss_dssp HHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHH-HHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHH
T ss_pred HHHHHHHHcCChhHHHHHhccCCChhHHHHHHH-HHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCH
Confidence 345566666766655444433334444444333 333333 44556666666655444332 333333333455667888
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh-hH----HHHHHHHHHHcCChHHHHHHHHH
Q 046775 416 EQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPDRGI-VS----WSAMIGGLAQHGRGKEALQMFGQ 490 (771)
Q Consensus 416 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~-~~----~~~li~~~~~~g~~~~A~~l~~~ 490 (771)
+.|.+++... .+.......+..|.+.++++.|.+.++.|.+-|. .+ ..+.+..+.-.+.+++|..+|++
T Consensus 119 ~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~E 192 (290)
T PF04733_consen 119 EEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEE 192 (290)
T ss_dssp HHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred HHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 8887776432 3456666788889999999999999998874431 11 22222222223468899999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCH-HHHHHHHHhC
Q 046775 491 MLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKF-QEAMELVDTM 562 (771)
Q Consensus 491 m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~-~eA~~~~~~m 562 (771)
+.+. ..++..+.+++..+..+.|++++|.+.+.+... ..|+ .++...++-+..-.|+. +.+.+++..+
T Consensus 193 l~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~---~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 193 LSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE---KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC---C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 7664 567777888888888888888888888776542 2333 33444444444444444 3344444444
No 108
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.38 E-value=2.5e-05 Score=89.46 Aligned_cols=206 Identities=15% Similarity=0.146 Sum_probs=169.3
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC--------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 046775 423 VHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPDR--------GIVSWSAMIGGLAQHGRGKEALQMFGQMLED 494 (771)
Q Consensus 423 ~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 494 (771)
.+.++.. |.+...|-..|......+++++|++++++.... -...|.++++.-...|.-+...++|+++.+.
T Consensus 1448 erlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy 1526 (1710)
T KOG1070|consen 1448 ERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY 1526 (1710)
T ss_pred HHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh
Confidence 3333433 556778888888888999999999999987621 1468999999988999888899999999883
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHhH
Q 046775 495 GVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTM-PFQA---NASV 570 (771)
Q Consensus 495 g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p---~~~~ 570 (771)
---...|..|+.-|...+..++|.++++.|.++++ -....|...++.|.|..+-++|.+++++. ..-| ...+
T Consensus 1527 --cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1527 --CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEF 1602 (1710)
T ss_pred --cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHH
Confidence 22234688888999999999999999999999887 66788999999999999999999998775 3334 3445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 046775 571 WGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDNKL 633 (771)
Q Consensus 571 ~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 633 (771)
..-.+..-.++||.++|+.+++-++.-.|.-...|..+..+-.+.|..+.+..+++.....++
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 555666668899999999999999999999999999999999999999999999998887765
No 109
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.38 E-value=6.4e-06 Score=86.44 Aligned_cols=218 Identities=13% Similarity=0.115 Sum_probs=162.9
Q ss_pred hcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHH
Q 046775 410 ANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPD---RGIVSWSAMIGGLAQHGRGKEALQ 486 (771)
Q Consensus 410 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 486 (771)
.+.|++..|.-.++..++.. |.+...|.-|...-+..++-..|+..+.+..+ .|....-+|...|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 34566777777777777765 56677777777777777777777777776653 345666677778888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHH--------HHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHH
Q 046775 487 MFGQMLEDGVLPNHITLVSV--------LCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMEL 558 (771)
Q Consensus 487 l~~~m~~~g~~pd~~t~~~l--------l~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~ 558 (771)
.++.=+... |-..-...- -....+...+....++|-.+....+..++.+.+.+|.-+|--.|.++.|.+-
T Consensus 375 ~L~~Wi~~~--p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNK--PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhC--ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 888765532 111100000 0122233344556667777766667668888999999999999999999999
Q ss_pred HHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHh
Q 046775 559 VDTM-PFQAN-ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKD 630 (771)
Q Consensus 559 ~~~m-~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 630 (771)
|+.. ..+|+ ..+|+-|......-...++|..+++++++|.|.-..+...|+-.|...|.++||.+.+-....
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9987 57885 559999999998888999999999999999999999999999999999999999998765543
No 110
>PLN02789 farnesyltranstransferase
Probab=98.38 E-value=9.2e-05 Score=76.20 Aligned_cols=196 Identities=8% Similarity=0.043 Sum_probs=122.9
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-CHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCCh--HHHHHH
Q 046775 414 AYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCG-SIDDADRAFSEIP---DRGIVSWSAMIGGLAQHGRG--KEALQM 487 (771)
Q Consensus 414 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g-~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~--~~A~~l 487 (771)
..+.|..+...+++.. +.+..+|+....++.+.| .++++...++.+. .++..+|+.....+.+.|+. ++++.+
T Consensus 52 ~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 52 RSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 3344444444444433 233334444444444555 4566777666554 33445666555455555543 567777
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhc---CC----HHHHHHH
Q 046775 488 FGQMLEDGVLP-NHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRA---GK----FQEAMEL 558 (771)
Q Consensus 488 ~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~---g~----~~eA~~~ 558 (771)
++++++ ..| |..++.....++.+.|++++++++++++.+. .|. ...|+....++.+. |. .+++.++
T Consensus 131 ~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 131 TRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---CCCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 777776 344 4456777777777777888888888877754 232 34444444444333 22 2466777
Q ss_pred HHh-CCCCC-CHhHHHHHHHHHHhcC----CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 046775 559 VDT-MPFQA-NASVWGALLGAARIYK----NVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASA 615 (771)
Q Consensus 559 ~~~-m~~~p-~~~~~~~ll~a~~~~~----~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 615 (771)
..+ +...| |...|+-+.+.+..++ +...+...+..++..+|+++.++..|+.+|+..
T Consensus 206 ~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 206 TIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 644 35566 4569999999888743 446688888999999999999999999999864
No 111
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.37 E-value=0.00063 Score=72.53 Aligned_cols=20 Identities=10% Similarity=-0.238 Sum_probs=12.0
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 046775 578 ARIYKNVEVGQHAAEMLFAI 597 (771)
Q Consensus 578 ~~~~~~~~~a~~~~~~~~~l 597 (771)
+...||.+.|.+.+..++++
T Consensus 317 ~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 317 AFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 34556666666666666554
No 112
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.33 E-value=2.4e-05 Score=74.92 Aligned_cols=146 Identities=9% Similarity=0.114 Sum_probs=106.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC-CcchHHHHHHHHhhcC
Q 046775 472 IGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQP-MQEHYACMIDILGRAG 550 (771)
Q Consensus 472 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g 550 (771)
+.+|.+.|+++.+....+++.. |. . .++..+..+++...++...+. .| +.+.|..+...|...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~---~P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCC
Confidence 4567777777665433322211 11 0 112255666777666666543 44 4778888888888999
Q ss_pred CHHHHHHHHHhC-CCCCC-HhHHHHHHHHH-HhcCC--HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHH
Q 046775 551 KFQEAMELVDTM-PFQAN-ASVWGALLGAA-RIYKN--VEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVR 625 (771)
Q Consensus 551 ~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~-~~~~~--~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 625 (771)
++++|.+.+++. ...|+ ..+|..+..+. ...|+ .+.|..+++++++++|+++.++..|+..+...|++++|...+
T Consensus 88 ~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 88 DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999888877 35664 45777777764 56666 589999999999999999999999999999999999999999
Q ss_pred HHHHhCC
Q 046775 626 RFMKDNK 632 (771)
Q Consensus 626 ~~m~~~g 632 (771)
+.+.+..
T Consensus 168 ~~aL~l~ 174 (198)
T PRK10370 168 QKVLDLN 174 (198)
T ss_pred HHHHhhC
Confidence 9987764
No 113
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.27 E-value=1.4e-05 Score=71.13 Aligned_cols=118 Identities=11% Similarity=0.016 Sum_probs=97.3
Q ss_pred cchHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 046775 536 QEHYACMIDILGRAGKFQEAMELVDTMP-FQAN-ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYA 613 (771)
Q Consensus 536 ~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 613 (771)
.+..-.+...+...|++++|..+|+-.- ..|. ..-|..|...|+..|+.+.|..++.++..++|+|+.+|..++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 4555566777889999999999998874 6674 5589999999999999999999999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHhCCCccCCccceEEEcCEEEEEEeCCCCccchHHHHHHHHHHHHHHH
Q 046775 614 SAGMWDNVAKVRRFMKDNKLKKEPGMSWIEVKDKVYTFTVGDRSHARSKEIYAKLDEVSDLLN 676 (771)
Q Consensus 614 ~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~~~~h~~~~~i~~~l~~l~~~~~ 676 (771)
..|+.+.|.+-++...... ..+|+..+|.++-+.....|.
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhh
Confidence 9999999999998665432 136777777777666655543
No 114
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.27 E-value=4.6e-05 Score=80.23 Aligned_cols=212 Identities=16% Similarity=0.187 Sum_probs=152.2
Q ss_pred cCChhHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcCCHHHHHHHHHhcCC---CceecHHHHHHHHHHcCChHHHHHHH
Q 046775 311 FQAIGVCKQVHALSVKTAFESDDYIVNSLIDAYGKCGHVEDAVKIFKESSA---VDLVACTSMITAYAQFGLGEEALKLY 387 (771)
Q Consensus 311 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 387 (771)
.|++..|.-.++..++.. +.+...|--|.......++-..|+..+++..+ .|....-+|...|...|.-.+|+..|
T Consensus 298 nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L 376 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKML 376 (579)
T ss_pred cCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 344555555555555443 44566677777777777777777777776554 45566666777888889999999999
Q ss_pred HHHhcCCC-----CC---CHhhHHHHHHHhhcccchHHHHHHHHHH-HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 046775 388 LEMQDREI-----NP---DSFVCSSLLNACANLSAYEQGKQVHVHI-IKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFS 458 (771)
Q Consensus 388 ~~m~~~g~-----~p---~~~t~~~ll~a~~~~~~~~~a~~i~~~~-~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~ 458 (771)
+.-+.... .+ +..+-.. ........+....++|-.+ ...+...|+.+...|.-.|--.|.++.|...|+
T Consensus 377 ~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~ 454 (579)
T KOG1125|consen 377 DKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFE 454 (579)
T ss_pred HHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHH
Confidence 88754320 00 1100000 1222233344445555444 445556899999999999999999999999999
Q ss_pred hCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHH
Q 046775 459 EIP---DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHI-TLVSVLCACNHAGLVAEAKHHFESME 527 (771)
Q Consensus 459 ~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 527 (771)
... ..|...||.|...++...+.++|++.|++.++ ++|+.+ ....|.-+|...|.++||.++|-...
T Consensus 455 ~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 455 AALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 876 33578999999999999999999999999999 899987 56677889999999999999887654
No 115
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.23 E-value=2.8e-05 Score=70.37 Aligned_cols=99 Identities=9% Similarity=-0.051 Sum_probs=87.7
Q ss_pred CCCCcchHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 046775 532 IQPMQEHYACMIDILGRAGKFQEAMELVDTMP-FQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLS 609 (771)
Q Consensus 532 i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 609 (771)
+.|+ ++......+...|++++|.+.++... ..| +...|..+..+|...|+.+.|...++++++++|+++.++..++
T Consensus 22 ~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg 99 (144)
T PRK15359 22 VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTG 99 (144)
T ss_pred cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 3555 46678889999999999999999873 556 5569999999999999999999999999999999999999999
Q ss_pred HHHHhcCCchhHHHHHHHHHhCC
Q 046775 610 NIYASAGMWDNVAKVRRFMKDNK 632 (771)
Q Consensus 610 ~~y~~~g~~~~a~~~~~~m~~~g 632 (771)
.+|...|++++|...++...+..
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999998876654
No 116
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.19 E-value=8.8e-05 Score=73.87 Aligned_cols=180 Identities=14% Similarity=0.060 Sum_probs=126.3
Q ss_pred CHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCch---hHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-h---hHH
Q 046775 398 DSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDT---FAGNSLVNMYAKCGSIDDADRAFSEIPD--RG-I---VSW 468 (771)
Q Consensus 398 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~---~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~-~---~~~ 468 (771)
....+......+...|+++.|...+..+++.. +.++ ..+..+...|.+.|++++|...|+.+.+ |+ . .+|
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 44567777788889999999999999998765 2222 4667888999999999999999998862 22 2 246
Q ss_pred HHHHHHHHHc--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchH
Q 046775 469 SAMIGGLAQH--------GRGKEALQMFGQMLEDGVLPNHI-TLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHY 539 (771)
Q Consensus 469 ~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y 539 (771)
..+..++.+. |+.++|++.|+++.. ..|+.. ....+.... .... .. ..+.
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~----~~~~------~~---------~~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMD----YLRN------RL---------AGKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHH----HHHH------HH---------HHHH
Confidence 6666666654 789999999999998 467653 222111110 0000 00 0112
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC----CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 046775 540 ACMIDILGRAGKFQEAMELVDTM----PFQAN-ASVWGALLGAARIYKNVEVGQHAAEMLFAIEP 599 (771)
Q Consensus 540 ~~lv~~l~r~g~~~eA~~~~~~m----~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p 599 (771)
..+.+.+.+.|++++|...+++. |-.|. ...|..+..++...|+.+.|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 35667788999999999888775 33343 45888888899999999999988887766555
No 117
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.17 E-value=3.1e-06 Score=55.46 Aligned_cols=34 Identities=44% Similarity=0.870 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 046775 466 VSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPN 499 (771)
Q Consensus 466 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 499 (771)
++||+||.+|++.|++++|.++|++|.+.|++||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 4799999999999999999999999999999998
No 118
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=0.00039 Score=67.10 Aligned_cols=81 Identities=17% Similarity=0.156 Sum_probs=63.0
Q ss_pred HHhhcCCHHHHHHHHHhCC----CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchh
Q 046775 545 ILGRAGKFQEAMELVDTMP----FQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDN 620 (771)
Q Consensus 545 ~l~r~g~~~eA~~~~~~m~----~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 620 (771)
.+.+.|+++.|.+-+..|| -+.|+++...+.- --..++...+.+-++-+++++|--+.++..+.-+|++..-++-
T Consensus 250 Ieyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al-~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~l 328 (459)
T KOG4340|consen 250 IEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQAL-MNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDL 328 (459)
T ss_pred hhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHH-hcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhH
Confidence 4568999999999999997 3446666654432 2345667777888888999999888888888889999998988
Q ss_pred HHHHHH
Q 046775 621 VAKVRR 626 (771)
Q Consensus 621 a~~~~~ 626 (771)
|..+..
T Consensus 329 AADvLA 334 (459)
T KOG4340|consen 329 AADVLA 334 (459)
T ss_pred HHHHHh
Confidence 888765
No 119
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.14 E-value=0.00011 Score=83.27 Aligned_cols=189 Identities=9% Similarity=0.058 Sum_probs=140.3
Q ss_pred hhHHHHHH-HhhcccchHH-HHHHHHHHHHhCCCCchhHHHHHHHHHHhc----CCHHHHHHHHhhCCCCChhHHHHHHH
Q 046775 400 FVCSSLLN-ACANLSAYEQ-GKQVHVHIIKFGFMSDTFAGNSLVNMYAKC----GSIDDADRAFSEIPDRGIVSWSAMIG 473 (771)
Q Consensus 400 ~t~~~ll~-a~~~~~~~~~-a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~----g~~~~A~~~f~~~~~~~~~~~~~li~ 473 (771)
.|...++. +.+..|..++ +.++|.++.+ ++..-+.- ..+.++..+..+.. .++..+-.|..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~La~ 94 (694)
T PRK15179 28 PTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRRYP-HTELFQVLVAR 94 (694)
T ss_pred cHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHhcc-ccHHHHHHHHH
Confidence 34444444 4556665554 4667766543 22222221 12233333333222 34667778888
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCC
Q 046775 474 GLAQHGRGKEALQMFGQMLEDGVLPNHI-TLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGK 551 (771)
Q Consensus 474 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~ 551 (771)
...+.|+.++|+.+++...+ +.||.. .+..+...+.+.+.+++|...+++... ..|+ ..+...+..+|...|+
T Consensus 95 i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~~a~~l~~~g~ 169 (694)
T PRK15179 95 ALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILLEAKSWDEIGQ 169 (694)
T ss_pred HHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHhcc
Confidence 89999999999999999999 789876 678888899999999999999999874 4676 6788889999999999
Q ss_pred HHHHHHHHHhCC-CCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHH
Q 046775 552 FQEAMELVDTMP-FQAN-ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHV 606 (771)
Q Consensus 552 ~~eA~~~~~~m~-~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~ 606 (771)
+++|.++|++.- -.|+ ..+|.++..+....|+.+.|..+++++++...+-...|.
T Consensus 170 ~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 170 SEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 999999999984 3554 568999999999999999999999999998765555543
No 120
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.13 E-value=0.00017 Score=68.97 Aligned_cols=156 Identities=13% Similarity=0.132 Sum_probs=112.6
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 046775 441 VNMYAKCGSIDDADRAFSEIPDRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAK 520 (771)
Q Consensus 441 i~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 520 (771)
+-.|.+.|+++......+.+..+. ..|...++.++++..+++.++.. +.|...+..+...+...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456777787776654443322211 01223566788888888887742 344557888888899999999999
Q ss_pred HHHHHHHHhhCCCCC-cchHHHHHHHH-hhcCC--HHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 046775 521 HHFESMEKKFGIQPM-QEHYACMIDIL-GRAGK--FQEAMELVDTM-PFQAN-ASVWGALLGAARIYKNVEVGQHAAEML 594 (771)
Q Consensus 521 ~~~~~m~~~~~i~p~-~~~y~~lv~~l-~r~g~--~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~ 594 (771)
..|++..+ +.|+ ...+..+..++ .+.|+ .++|.+++++. ...|+ ..++..|..++...|+.+.|...++++
T Consensus 94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99988774 4564 67778888864 67787 58999999887 35664 457888888889999999999999999
Q ss_pred HhcCCCCchhHHHH
Q 046775 595 FAIEPEKSSTHVLL 608 (771)
Q Consensus 595 ~~l~p~~~~~~~~l 608 (771)
++++|.+..-+-.+
T Consensus 171 L~l~~~~~~r~~~i 184 (198)
T PRK10370 171 LDLNSPRVNRTQLV 184 (198)
T ss_pred HhhCCCCccHHHHH
Confidence 99998777655433
No 121
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.13 E-value=6.6e-05 Score=81.04 Aligned_cols=132 Identities=8% Similarity=0.034 Sum_probs=85.7
Q ss_pred ccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCC-hhHHHHHHHHHHHcCChHHHHHHH
Q 046775 412 LSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIP--DRG-IVSWSAMIGGLAQHGRGKEALQMF 488 (771)
Q Consensus 412 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~l~ 488 (771)
.++++++...++.-.+.. +....+|-.+..++.++++.+.|.+.|.... +|| ..+||.+-.+|.+.|+-.+|...+
T Consensus 498 ~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l 576 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKL 576 (777)
T ss_pred chhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHH
Confidence 345555555555554443 4455566677777778888888888887665 443 568888888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHH
Q 046775 489 GQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDI 545 (771)
Q Consensus 489 ~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~ 545 (771)
.+..+.... +...+-.....-...|.+++|++.+.++........+.++-.-++..
T Consensus 577 ~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~ 632 (777)
T KOG1128|consen 577 KEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRT 632 (777)
T ss_pred HHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHH
Confidence 888876522 22234444444567788888888888776543333345555444433
No 122
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.10 E-value=5.1e-06 Score=54.37 Aligned_cols=35 Identities=37% Similarity=0.608 Sum_probs=32.9
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCc
Q 046775 62 VSWNSLFSCYVHCDFLEEAVCFFKEMVLSGIRPNE 96 (771)
Q Consensus 62 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 96 (771)
++||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
No 123
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=0.0016 Score=63.01 Aligned_cols=174 Identities=14% Similarity=0.095 Sum_probs=95.1
Q ss_pred HHHHhcCCHHHHHHHHhhCCCC-----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCc
Q 046775 442 NMYAKCGSIDDADRAFSEIPDR-----GIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLP-NHITLVSVLCACNHAGL 515 (771)
Q Consensus 442 ~~y~k~g~~~~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~ 515 (771)
..+.+.|+.+.|.+.+-.|+.+ |++|...|.-. -..|++.+..+-++-++.. .| -..||..+|--|++...
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~--nPfP~ETFANlLllyCKNey 325 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQ--NPFPPETFANLLLLYCKNEY 325 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhc--CCCChHHHHHHHHHHhhhHH
Confidence 4466889999999999999954 56776655332 2345555555555555553 44 34699999999999988
Q ss_pred HHHHHHHHHHHHHhhCCCCCcchHHHH-------HHHHhh-cCCHHHHHHHHHhCCCCCCHhHHHHHHH--HHHhcCCHH
Q 046775 516 VAEAKHHFESMEKKFGIQPMQEHYACM-------IDILGR-AGKFQEAMELVDTMPFQANASVWGALLG--AARIYKNVE 585 (771)
Q Consensus 516 ~~~a~~~~~~m~~~~~i~p~~~~y~~l-------v~~l~r-~g~~~eA~~~~~~m~~~p~~~~~~~ll~--a~~~~~~~~ 585 (771)
++-|-.++.+ .|+ .+|-|+ .|.+.- .-..++|++-++.+...- ..-.+.+.. --.++.+.+
T Consensus 326 f~lAADvLAE-------n~~-lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l-~~kLRklAi~vQe~r~~~dd 396 (459)
T KOG4340|consen 326 FDLAADVLAE-------NAH-LTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGML-TEKLRKLAIQVQEARHNRDD 396 (459)
T ss_pred HhHHHHHHhh-------Ccc-hhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccH
Confidence 8888777543 222 233332 333332 234455555444331000 000011100 001223322
Q ss_pred HH----HHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHh
Q 046775 586 VG----QHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKD 630 (771)
Q Consensus 586 ~a----~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 630 (771)
.+ ..-++..+|+- -.....-+++|....++..+.+.++.-.+
T Consensus 397 ~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 397 EAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 22 22333333331 12344567889999999999988875444
No 124
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.09 E-value=0.00053 Score=79.17 Aligned_cols=203 Identities=15% Similarity=0.142 Sum_probs=160.2
Q ss_pred HhhHHHHHHHHhccCChhHHHHHHHHHHHhc-C---CCchHHHhHHHHHHHhcCCHHHHHHHHHhcCCC-c-eecHHHHH
Q 046775 298 QTTLSTVLKSVASFQAIGVCKQVHALSVKTA-F---ESDDYIVNSLIDAYGKCGHVEDAVKIFKESSAV-D-LVACTSMI 371 (771)
Q Consensus 298 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g-~---~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~-~-~~~~~~li 371 (771)
...|..-+.-....++++.|+++.+.+++.= + +--..+|.+++++-.--|.-+...++|++..+- | ...|..|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLL 1537 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 3445556666666777777777777766531 1 122357888888888888888889999987763 2 35678899
Q ss_pred HHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCH
Q 046775 372 TAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFM-SDTFAGNSLVNMYAKCGSI 450 (771)
Q Consensus 372 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~-~~~~~~~~Li~~y~k~g~~ 450 (771)
..|.+.+.+++|.++|+.|.+. ..-....|...+....+...-+.|..++.++.+.-.. ..+.+..-.+++-.++|+.
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 9999999999999999999874 3456677888888888888889999999988876321 2456677788889999999
Q ss_pred HHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 046775 451 DDADRAFSEIP---DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHI 501 (771)
Q Consensus 451 ~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 501 (771)
+.++.+|+... .+-...|+..|..-.+||+.+.+..+|++....++.|-..
T Consensus 1617 eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkm 1670 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKM 1670 (1710)
T ss_pred hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHh
Confidence 99999999887 3446789999999999999999999999999999888765
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.05 E-value=0.00048 Score=78.28 Aligned_cols=143 Identities=11% Similarity=0.101 Sum_probs=118.8
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH-HH
Q 046775 429 GFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIP--DRG-IVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHIT-LV 504 (771)
Q Consensus 429 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-~~ 504 (771)
.++.++..+-.|.+.-...|.+++|..+++... .|| ...+..++..+.+.+++++|+..+++... ..||..+ ..
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHH
Confidence 456778899999999999999999999999887 344 67888899999999999999999999999 5788765 55
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHhHHHHHHH
Q 046775 505 SVLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAMELVDTMP--FQANASVWGALLG 576 (771)
Q Consensus 505 ~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~--~~p~~~~~~~ll~ 576 (771)
.+..++.+.|..++|..+|++.... .|+ ...+..+..+|-..|+.++|...|++.- ..|.+-.++.+++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~---~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQ---HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 5666788999999999999999863 444 6788899999999999999999999872 4555555554443
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.04 E-value=0.00088 Score=69.62 Aligned_cols=146 Identities=16% Similarity=0.105 Sum_probs=105.4
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHH
Q 046775 465 IVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVL-CACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACM 542 (771)
Q Consensus 465 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~l 542 (771)
...|-...-.+...|++++|+..++.++. -.||...|..+. .-+...|+.++|.+.++++... .|+ ....-.+
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~ 380 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNL 380 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHH
Confidence 34444445556677888888888888777 466666555444 4577788888888888888743 566 4455566
Q ss_pred HHHHhhcCCHHHHHHHHHhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchh
Q 046775 543 IDILGRAGKFQEAMELVDTMP--FQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDN 620 (771)
Q Consensus 543 v~~l~r~g~~~eA~~~~~~m~--~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 620 (771)
.++|.+.|+..||...++... .+-|+..|..|..+|...||..++..+ .+..|+-.|+|++
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~ 443 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQ 443 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHH
Confidence 788888888888888887763 233566888888888888887666554 3457888899999
Q ss_pred HHHHHHHHHhCC
Q 046775 621 VAKVRRFMKDNK 632 (771)
Q Consensus 621 a~~~~~~m~~~g 632 (771)
|....+..+++.
T Consensus 444 A~~~l~~A~~~~ 455 (484)
T COG4783 444 AIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHhc
Confidence 988888777764
No 127
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.03 E-value=0.0024 Score=63.08 Aligned_cols=250 Identities=20% Similarity=0.235 Sum_probs=176.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHH---HHHHHcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccC
Q 046775 439 SLVNMYAKCGSIDDADRAFSEIPDRGIVSWSAMI---GGLAQHGRGKEALQMFGQMLEDGVLPNHIT-LVSVLCACNHAG 514 (771)
Q Consensus 439 ~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-~~~ll~a~~~~g 514 (771)
-|...+.-.|++.+|+.-|....+-|+..|.++. ..|..-|+..-|+.=|.+.++ ++||-.. -..-...+.+.|
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcc
Confidence 3455566678888899989888877777777664 567888999999999999988 7898653 233344567889
Q ss_pred cHHHHHHHHHHHHHhhCCCCC----cchHHH------------HHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHH
Q 046775 515 LVAEAKHHFESMEKKFGIQPM----QEHYAC------------MIDILGRAGKFQEAMELVDTM-PFQA-NASVWGALLG 576 (771)
Q Consensus 515 ~~~~a~~~~~~m~~~~~i~p~----~~~y~~------------lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~ 576 (771)
.+++|..-|+...+. .|+ .+++.- .+.-+.-.|+...|++++..+ .+.| |+..+..-..
T Consensus 121 ele~A~~DF~~vl~~---~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rak 197 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQH---EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAK 197 (504)
T ss_pred cHHHHHHHHHHHHhc---CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHH
Confidence 999999999988754 442 222222 223345678999999999887 3555 5555555556
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCCccceEEEcCEEEEEEeCCC
Q 046775 577 AARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDNKLKKEPGMSWIEVKDKVYTFTVGDR 656 (771)
Q Consensus 577 a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~~~ 656 (771)
++...|++..|..-.+.+-++..+|+..+.-.|.+|...|+.+++....+.-.+. |.
T Consensus 198 c~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl-----------------------dp 254 (504)
T KOG0624|consen 198 CYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL-----------------------DP 254 (504)
T ss_pred HHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc-----------------------Cc
Confidence 6677899999999999999999999999999999999999999887765544332 22
Q ss_pred CccchHHHHHHHHHHHHHHHhcCcccCCccccCCcchhhhhhhhccccHHHHHHcccccCCCC-CeEEEeecccccc
Q 046775 657 SHARSKEIYAKLDEVSDLLNKAGYVPMVETDLHDVEESEKEQLLYHHSEKLAVAFGLIATPPG-ATIRVKKNLRICV 732 (771)
Q Consensus 657 ~h~~~~~i~~~l~~l~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~~-~~~~~~kn~r~c~ 732 (771)
.|...---|.+|..+.+.+..+- +..|+ ....|-|+-.=.++.+.|. ++||+.---++|.
T Consensus 255 dHK~Cf~~YKklkKv~K~les~e--------------~~ie~--~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~ 315 (504)
T KOG0624|consen 255 DHKLCFPFYKKLKKVVKSLESAE--------------QAIEE--KHWTECLEAGEKVLKNEPEETMIRYNGFRVLCT 315 (504)
T ss_pred chhhHHHHHHHHHHHHHHHHHHH--------------HHHhh--hhHHHHHHHHHHHHhcCCcccceeeeeeheeee
Confidence 35555556777777666554321 00010 1235667777777888777 8888876666664
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.02 E-value=0.00048 Score=71.49 Aligned_cols=123 Identities=20% Similarity=0.085 Sum_probs=107.0
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcC
Q 046775 506 VLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAMELVDTM-PFQAN-ASVWGALLGAARIYK 582 (771)
Q Consensus 506 ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~ 582 (771)
..-.....|..++|+..++.+... .|+ +......++.+.++|+.++|.+.++++ ...|+ ...|-.+..++...|
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g 388 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcC
Confidence 334456689999999999998865 565 555667889999999999999999998 47787 558888999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 046775 583 NVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 583 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
+..+|.+.++....-+|+|+..|.+|+..|+.+|+-.++..-+.++-..
T Consensus 389 ~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 389 KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999988876543
No 129
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.02 E-value=0.00022 Score=68.16 Aligned_cols=135 Identities=13% Similarity=0.099 Sum_probs=106.6
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHhHHHH
Q 046775 496 VLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTM--PFQANASVWGA 573 (771)
Q Consensus 496 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~~p~~~~~~~ 573 (771)
..|+......+-.++.-.|+-+.+..+.......+ .-+.+.....+....+.|++.+|...+++. +-.||...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~~--~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAIAY--PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhccC--cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 35544333556667777888888877776654322 222334455888999999999999999987 34567779999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 046775 574 LLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDNK 632 (771)
Q Consensus 574 ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 632 (771)
+..+|-..|+.+.|...+.+++++.|+++.++..|+-.|.-.|+.++|..+.......+
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999988776554
No 130
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.01 E-value=4.4e-05 Score=68.51 Aligned_cols=100 Identities=16% Similarity=0.268 Sum_probs=77.5
Q ss_pred CCCC-cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 046775 532 IQPM-QEHYACMIDILGRAGKFQEAMELVDTM-PFQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLL 608 (771)
Q Consensus 532 i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l 608 (771)
..|+ ......++..+...|++++|.+.++.. ...| +...|..+...+...|+.+.|...++++++++|+++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 3443 344556667777778888888777765 3445 445777777777888899999999999999999999999999
Q ss_pred HHHHHhcCCchhHHHHHHHHHhC
Q 046775 609 SNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 609 ~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
+.+|...|++++|.+.++...+.
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999988766554
No 131
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.00 E-value=0.00021 Score=75.03 Aligned_cols=122 Identities=14% Similarity=0.105 Sum_probs=100.4
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHhHHHHHHHHHHh
Q 046775 503 LVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMP-FQA-NASVWGALLGAARI 580 (771)
Q Consensus 503 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~ 580 (771)
..+++..+...+++++|.++|+++.+. .|+ ....++.++...++-.+|.+++++.- ..| +...+......|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 446677777888999999999998865 354 45567888888888889998888763 344 45566666667888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHH
Q 046775 581 YKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMK 629 (771)
Q Consensus 581 ~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 629 (771)
.++.+.|..+++++.++.|++..+|..|+.+|...|+|++|.-....+-
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999998888764
No 132
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.99 E-value=0.00075 Score=64.57 Aligned_cols=177 Identities=12% Similarity=0.063 Sum_probs=119.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 046775 438 NSLVNMYAKCGSIDDADRAFSEIP---DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAG 514 (771)
Q Consensus 438 ~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g 514 (771)
..+-..|--.|+-+.+..+..... ..|....+..+....+.|++.+|+..|++.... -+||..+++.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHcc
Confidence 445555666677777666666543 334445566777788888888888888888774 2456667888888888888
Q ss_pred cHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCC--CHhHHHHHHHHHHhcCCHHHHHHHHH
Q 046775 515 LVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMPFQA--NASVWGALLGAARIYKNVEVGQHAAE 592 (771)
Q Consensus 515 ~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p--~~~~~~~ll~a~~~~~~~~~a~~~~~ 592 (771)
+.++|..-|.+..+..+-+ ...++.|.-.|.-.|+++.|..++...-..| |..+-..|.-+-...|+++.|+.+..
T Consensus 149 r~~~Ar~ay~qAl~L~~~~--p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELAPNE--PSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhccCC--chhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 8888888888877553322 4556777777778888888888887764322 56677777777788888888887766
Q ss_pred HHHhcCCCCchhHHHHHHHHHhcCCc
Q 046775 593 MLFAIEPEKSSTHVLLSNIYASAGMW 618 (771)
Q Consensus 593 ~~~~l~p~~~~~~~~l~~~y~~~g~~ 618 (771)
+-+..+- -......|.++...+|-|
T Consensus 227 ~e~~~~~-~~~~~~~l~~~~~~~~~~ 251 (257)
T COG5010 227 QELLSEQ-AANNVAALRAAASQSGAW 251 (257)
T ss_pred ccccchh-HhhHHHHHHHhhcccchh
Confidence 5443321 112233455555555554
No 133
>PLN02789 farnesyltranstransferase
Probab=97.97 E-value=0.0027 Score=65.49 Aligned_cols=203 Identities=14% Similarity=0.066 Sum_probs=131.5
Q ss_pred HHHHHHcCChHHHHHHHHHHhcCCCCCCHhh-HHHHHHHhhccc-chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 046775 371 ITAYAQFGLGEEALKLYLEMQDREINPDSFV-CSSLLNACANLS-AYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCG 448 (771)
Q Consensus 371 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~-~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g 448 (771)
-..+...++.++|+.++.++++ +.|+..| +..--.++..++ .++++...+..+++.. +.+..+|+...-++.+.|
T Consensus 44 ra~l~~~e~serAL~lt~~aI~--lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIR--LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcC
Confidence 3345556777888888888775 3555543 322223334445 5677888888877765 455556776655666666
Q ss_pred CH--HHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---Cc----H
Q 046775 449 SI--DDADRAFSEIP---DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHA---GL----V 516 (771)
Q Consensus 449 ~~--~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~---g~----~ 516 (771)
.. +++...++.+. .+|..+|+.....+...|++++|++.++++++.... |...+......+.+. |. .
T Consensus 121 ~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 121 PDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred chhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccH
Confidence 53 56777776665 556788999888888999999999999999986533 334555544444443 22 3
Q ss_pred HHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhc----CCHHHHHHHHHhC-CCCCCHh-HHHHHHHHHHh
Q 046775 517 AEAKHHFESMEKKFGIQPM-QEHYACMIDILGRA----GKFQEAMELVDTM-PFQANAS-VWGALLGAARI 580 (771)
Q Consensus 517 ~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~----g~~~eA~~~~~~m-~~~p~~~-~~~~ll~a~~~ 580 (771)
++..++..++... .|+ ...|..+..+|... ++..+|.+++.+. ...|+.. ....|+..+..
T Consensus 200 e~el~y~~~aI~~---~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 200 DSELKYTIDAILA---NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHHh---CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 5677777666543 555 66777777777763 4456788887775 3455443 66666666653
No 134
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.95 E-value=0.0024 Score=73.37 Aligned_cols=164 Identities=7% Similarity=0.082 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046775 436 AGNSLVNMYAKCGSIDDADRAFSEIP---DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNH 512 (771)
Q Consensus 436 ~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 512 (771)
.+-.|..+|-+.|+.++|..+++++. ..|+...|.+...|+.. +.++|++++.+.+.. +..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~ 181 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIK 181 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHh
Confidence 44455555555555555555555544 22344555555555555 555555555555442 223
Q ss_pred cCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 046775 513 AGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAMELVDTMPFQANASVWGALLGAARIYKNVEVGQHAA 591 (771)
Q Consensus 513 ~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~ 591 (771)
..++.++.++|..+... .|+ .+.+--+.... .....+.--+.+|--|-.-++..++.+.+..++
T Consensus 182 ~kq~~~~~e~W~k~~~~---~~~d~d~f~~i~~ki------------~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHY---NSDDFDFFLRIERKV------------LGHREFTRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred hhcchHHHHHHHHHHhc---CcccchHHHHHHHHH------------HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 33444455555554421 222 11111111100 000111122234444555566677777788888
Q ss_pred HHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 046775 592 EMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDNK 632 (771)
Q Consensus 592 ~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 632 (771)
+.+++.+|.|..+..-|+..|. +++.+-..+-+.++-.|
T Consensus 247 K~iL~~~~~n~~a~~~l~~~y~--~kY~~~~~~ee~l~~s~ 285 (906)
T PRK14720 247 KKILEHDNKNNKAREELIRFYK--EKYKDHSLLEDYLKMSD 285 (906)
T ss_pred HHHHhcCCcchhhHHHHHHHHH--HHccCcchHHHHHHHhc
Confidence 8888888887777777777666 44544333333333333
No 135
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.95 E-value=1.5e-05 Score=51.74 Aligned_cols=33 Identities=36% Similarity=0.624 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 046775 466 VSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLP 498 (771)
Q Consensus 466 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 498 (771)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
No 136
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.93 E-value=1.5e-05 Score=51.77 Aligned_cols=34 Identities=26% Similarity=0.489 Sum_probs=31.0
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCC
Q 046775 61 VVSWNSLFSCYVHCDFLEEAVCFFKEMVLSGIRP 94 (771)
Q Consensus 61 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p 94 (771)
+.+||.+|.+|++.|+++.|+++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4689999999999999999999999999999887
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.89 E-value=0.00031 Score=73.78 Aligned_cols=127 Identities=13% Similarity=0.126 Sum_probs=103.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcc
Q 046775 435 FAGNSLVNMYAKCGSIDDADRAFSEIPDRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNH-ITLVSVLCACNHA 513 (771)
Q Consensus 435 ~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~ 513 (771)
.+..+|+..+...++++.|..+|+++.+.+...+-.|+..+...++-.+|++++++.++. .|+. ..+..-...|...
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc
Confidence 344566677777899999999999998777766777888888889999999999999974 4544 4444455568889
Q ss_pred CcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 046775 514 GLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAMELVDTMPFQA 566 (771)
Q Consensus 514 g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p 566 (771)
++.+.|+++.+++.+ ..|+ ...|..|+..|.+.|++++|+..++.+|+-|
T Consensus 248 ~~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 248 KKYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 999999999999884 4776 6699999999999999999999999999655
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.75 E-value=0.00067 Score=60.76 Aligned_cols=114 Identities=10% Similarity=0.078 Sum_probs=82.1
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 046775 487 MFGQMLEDGVLPNHI-TLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTM-PF 564 (771)
Q Consensus 487 l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~ 564 (771)
+|++.+. ..|+.. ....+...+...|++++|.+.|+...... +.+...+..+...+.+.|++++|.+.+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555 456543 45566667777888888888888776531 224567777888888888888888887766 34
Q ss_pred CC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh
Q 046775 565 QA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSST 604 (771)
Q Consensus 565 ~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 604 (771)
.| +...|..+...+...|+.+.|...++++++++|++...
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 45 45577777778888899999999999999999977663
No 139
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.72 E-value=3.9e-05 Score=48.48 Aligned_cols=31 Identities=35% Similarity=0.718 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 046775 466 VSWSAMIGGLAQHGRGKEALQMFGQMLEDGV 496 (771)
Q Consensus 466 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 496 (771)
++||+||.+|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888888764
No 140
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=0.0058 Score=58.18 Aligned_cols=164 Identities=20% Similarity=0.193 Sum_probs=115.0
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCChhHHHHH---HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcH
Q 046775 440 LVNMYAKCGSIDDADRAFSEIPDRGIVSWSAM---IGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLV 516 (771)
Q Consensus 440 Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~ 516 (771)
+.-+..-+|+.+.|...++.+..+-.-|...+ ..-+-..|++++|+++++..++.. +.|.+++.--+...-..|+.
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~ 136 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKN 136 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCc
Confidence 33334456666666666665542211111111 122456788999999999998875 55667777767677777888
Q ss_pred HHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHh-HHHHHHHHHHhc---CCHHHHHHHH
Q 046775 517 AEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMP-FQANAS-VWGALLGAARIY---KNVEVGQHAA 591 (771)
Q Consensus 517 ~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p~~~-~~~~ll~a~~~~---~~~~~a~~~~ 591 (771)
-+|++-+....+.| ..|.+.|.-+.++|...|+++.|.--++++- ..|-.. ....|....... .|++.+...+
T Consensus 137 l~aIk~ln~YL~~F--~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy 214 (289)
T KOG3060|consen 137 LEAIKELNEYLDKF--MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYY 214 (289)
T ss_pred HHHHHHHHHHHHHh--cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 89998888888754 7788899999999999999999999998883 556433 445555444443 4889999999
Q ss_pred HHHHhcCCCCchhHH
Q 046775 592 EMLFAIEPEKSSTHV 606 (771)
Q Consensus 592 ~~~~~l~p~~~~~~~ 606 (771)
++++++.|.+...+.
T Consensus 215 ~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 215 ERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHhChHhHHHHH
Confidence 999999997766544
No 141
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.0021 Score=61.04 Aligned_cols=169 Identities=18% Similarity=0.202 Sum_probs=119.4
Q ss_pred cCCHHHHHHHHhhCC--------CCCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhccCcH
Q 046775 447 CGSIDDADRAFSEIP--------DRGI-VSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSV-LCACNHAGLV 516 (771)
Q Consensus 447 ~g~~~~A~~~f~~~~--------~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l-l~a~~~~g~~ 516 (771)
..+.++..+++..+. .++. ..+..++-+....|+...|...++++... + |++.-...+ ..-+-..|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 356777777777665 1222 23344455556778888888888888875 3 554322211 1123446888
Q ss_pred HHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 046775 517 AEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAMELVDTM--PFQANASVWGALLGAARIYKNVEVGQHAAEM 593 (771)
Q Consensus 517 ~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~ 593 (771)
++|.++++++.++ .|+ ...|---+-++-..|+--+|++-+.+. .|..|...|.-|...+...|+++.|.-.++.
T Consensus 103 ~~A~e~y~~lL~d---dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 103 KEAIEYYESLLED---DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhHHHHHHHHhcc---CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 9999999988866 354 555666666677777777888777665 3667888899999999999999999999999
Q ss_pred HHhcCCCCchhHHHHHHHHHhcCCchh
Q 046775 594 LFAIEPEKSSTHVLLSNIYASAGMWDN 620 (771)
Q Consensus 594 ~~~l~p~~~~~~~~l~~~y~~~g~~~~ 620 (771)
++=+.|.++..+-.|+.++.-.|-.+.
T Consensus 180 ~ll~~P~n~l~f~rlae~~Yt~gg~eN 206 (289)
T KOG3060|consen 180 LLLIQPFNPLYFQRLAEVLYTQGGAEN 206 (289)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHhhHHH
Confidence 999999999888899988877766444
No 142
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.66 E-value=5.7e-05 Score=47.72 Aligned_cols=31 Identities=45% Similarity=0.610 Sum_probs=26.5
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHhHHCCC
Q 046775 62 VSWNSLFSCYVHCDFLEEAVCFFKEMVLSGI 92 (771)
Q Consensus 62 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~ 92 (771)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5788899999999999999999998888764
No 143
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.65 E-value=0.00058 Score=66.65 Aligned_cols=113 Identities=15% Similarity=0.181 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHh
Q 046775 483 EALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAMELVDT 561 (771)
Q Consensus 483 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~ 561 (771)
+...+-++++.+| .-....+++++|+..|.... .+.|+ ...|..=..+|.+.|.+++|.+-.+.
T Consensus 76 e~~~~AE~LK~eG------------N~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~ 140 (304)
T KOG0553|consen 76 EDKALAESLKNEG------------NKLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCES 140 (304)
T ss_pred hHHHHHHHHHHHH------------HHHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 4455555555554 22345677777777777766 34665 33344456677778888777776665
Q ss_pred C-CCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 046775 562 M-PFQANAS-VWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSN 610 (771)
Q Consensus 562 m-~~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 610 (771)
. .+.|... .|..|.-|+...|+.+.|+++++++++++|+|....-.|..
T Consensus 141 Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 141 ALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred HHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 5 4677655 88888889999999999999999999999988855444443
No 144
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.60 E-value=0.00064 Score=71.72 Aligned_cols=83 Identities=11% Similarity=0.058 Sum_probs=41.1
Q ss_pred hhcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHH
Q 046775 547 GRAGKFQEAMELVDTM-PFQAN-ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKV 624 (771)
Q Consensus 547 ~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 624 (771)
.+.|++++|++++++. ...|+ ...|..+..++...|+++.|...++++++++|+++.+|..++.+|...|++++|...
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~ 92 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAA 92 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3444444554444443 22332 224444444445555555555555555555555555555555555555555555555
Q ss_pred HHHHH
Q 046775 625 RRFMK 629 (771)
Q Consensus 625 ~~~m~ 629 (771)
++...
T Consensus 93 ~~~al 97 (356)
T PLN03088 93 LEKGA 97 (356)
T ss_pred HHHHH
Confidence 54443
No 145
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.57 E-value=0.049 Score=55.19 Aligned_cols=237 Identities=17% Similarity=0.133 Sum_probs=155.9
Q ss_pred cCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 046775 377 FGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRA 456 (771)
Q Consensus 377 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 456 (771)
.|+++.|.+-|+.|... ......-+..+.-..-+.|+.+.++++-+..-..- +.-...+.++++..+..|+++.|.++
T Consensus 133 eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkL 210 (531)
T COG3898 133 EGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKL 210 (531)
T ss_pred cCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHH
Confidence 46666666666666541 01111122333334456788888888777765544 34456778889999999999999999
Q ss_pred HhhCC-----CCChh--HHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHH
Q 046775 457 FSEIP-----DRGIV--SWSAMIGGLAQ---HGRGKEALQMFGQMLEDGVLPNHI-TLVSVLCACNHAGLVAEAKHHFES 525 (771)
Q Consensus 457 f~~~~-----~~~~~--~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~ 525 (771)
.+.-. ++|+. .--.|+.+-+. .-+...|...-.+..+ +.||-+ .-+.-..++...|++.+|-.+++.
T Consensus 211 vd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~ 288 (531)
T COG3898 211 VDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILET 288 (531)
T ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHH
Confidence 98654 45542 22233333222 2356667776666666 788876 445556789999999999999999
Q ss_pred HHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 046775 526 MEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTM----PFQANAS-VWGALLGAARIYKNVEVGQHAAEMLFAIEPE 600 (771)
Q Consensus 526 m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 600 (771)
+-+. +|.+..+...+ ..|.|+. +.+-+++. .++||.. .-.++..+....|++..|...++.+..++|
T Consensus 289 aWK~---ePHP~ia~lY~--~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p- 360 (531)
T COG3898 289 AWKA---EPHPDIALLYV--RARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP- 360 (531)
T ss_pred HHhc---CCChHHHHHHH--HhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc-
Confidence 8754 77766554333 3455542 22222222 3567654 556666788889999999999999999999
Q ss_pred CchhHHHHHHHHHhc-CCchhHHHHH
Q 046775 601 KSSTHVLLSNIYASA-GMWDNVAKVR 625 (771)
Q Consensus 601 ~~~~~~~l~~~y~~~-g~~~~a~~~~ 625 (771)
..+.|.+|+.|-... |+-.++....
T Consensus 361 res~~lLlAdIeeAetGDqg~vR~wl 386 (531)
T COG3898 361 RESAYLLLADIEEAETGDQGKVRQWL 386 (531)
T ss_pred hhhHHHHHHHHHhhccCchHHHHHHH
Confidence 667889999987654 7766554443
No 146
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.56 E-value=0.24 Score=55.85 Aligned_cols=167 Identities=13% Similarity=0.153 Sum_probs=91.0
Q ss_pred HHHHHHhhcccchH---HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChh--HHHH-HHHHHH
Q 046775 403 SSLLNACANLSAYE---QGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPDRGIV--SWSA-MIGGLA 476 (771)
Q Consensus 403 ~~ll~a~~~~~~~~---~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~--~~~~-li~~~~ 476 (771)
+.++..|-+.++.. +|.-+++...... +.|..+--.||..|+-.|-...|.++|+.+.-+++. |..- +..-+.
T Consensus 440 ~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~~ 518 (932)
T KOG2053|consen 440 NHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRAE 518 (932)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHHH
Confidence 34556666666554 3333444443333 455556667889999899999999999988755542 2222 234445
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcH---HHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCC
Q 046775 477 QHGRGKEALQMFGQMLEDGVLPNH--ITLVSVLCACNHAGLV---AEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGK 551 (771)
Q Consensus 477 ~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~---~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~ 551 (771)
..|++..+...+++...- --+. .|--.+..||.+ |.+ .+-..+-++|.... -.-...+=+...+.+.-+++
T Consensus 519 t~g~~~~~s~~~~~~lkf--y~~~~kE~~eyI~~AYr~-g~ySkI~em~~fr~rL~~S~-q~~a~~VE~~~l~ll~~~~~ 594 (932)
T KOG2053|consen 519 TSGRSSFASNTFNEHLKF--YDSSLKETPEYIALAYRR-GAYSKIPEMLAFRDRLMHSL-QKWACRVENLQLSLLCNADR 594 (932)
T ss_pred hcccchhHHHHHHHHHHH--HhhhhhhhHHHHHHHHHc-CchhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCc
Confidence 566777777666665541 1111 122222334332 333 33333333332210 00011223456678889999
Q ss_pred HHHHHHHHHhCCCCC--CHhHHHHH
Q 046775 552 FQEAMELVDTMPFQA--NASVWGAL 574 (771)
Q Consensus 552 ~~eA~~~~~~m~~~p--~~~~~~~l 574 (771)
.++=...+..|...| |.+-|.+|
T Consensus 595 ~~q~~~~~~~~~l~~~e~~I~w~~L 619 (932)
T KOG2053|consen 595 GTQLLKLLESMKLPPSEDRIQWVSL 619 (932)
T ss_pred HHHHHHHHhccccCcchhhcccccc
Confidence 999999998886555 33455554
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.55 E-value=0.00063 Score=55.89 Aligned_cols=92 Identities=14% Similarity=0.203 Sum_probs=72.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC-CCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 046775 539 YACMIDILGRAGKFQEAMELVDTMP-FQAN-ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAG 616 (771)
Q Consensus 539 y~~lv~~l~r~g~~~eA~~~~~~m~-~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 616 (771)
+..+...+.+.|++++|.+.+++.. ..|+ ..+|..+...+...++.+.|...++++.++.|.++..+..++.+|...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 4456667777888888888887762 3444 3567777777778899999999999999999988888999999999999
Q ss_pred CchhHHHHHHHHHh
Q 046775 617 MWDNVAKVRRFMKD 630 (771)
Q Consensus 617 ~~~~a~~~~~~m~~ 630 (771)
++++|.+.+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999888776544
No 148
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.0022 Score=65.06 Aligned_cols=89 Identities=9% Similarity=0.076 Sum_probs=73.5
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCC-----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 046775 544 DILGRAGKFQEAMELVDTM-PFQAN-----ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGM 617 (771)
Q Consensus 544 ~~l~r~g~~~eA~~~~~~m-~~~p~-----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 617 (771)
.-..+.|++.+|.+.+.+. .+.|+ +-.|.....+...+|+.+.|..-.+.+++++|.-..+|..-+++|-..++
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEK 336 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999886 34554 44555555666788999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHhCC
Q 046775 618 WDNVAKVRRFMKDNK 632 (771)
Q Consensus 618 ~~~a~~~~~~m~~~g 632 (771)
|++|.+-++..-+.-
T Consensus 337 ~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999887665543
No 149
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.49 E-value=0.00013 Score=59.16 Aligned_cols=77 Identities=16% Similarity=0.261 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHhC----CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHH
Q 046775 550 GKFQEAMELVDTM----PFQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVR 625 (771)
Q Consensus 550 g~~~eA~~~~~~m----~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 625 (771)
|++++|+.+++++ |..|+...|..+..++...|+.+.|..++++ .+.+|.+.....+++.+|...|+|++|.+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4455555555444 1112344555566666666667777666666 6667767677777788888888888888877
Q ss_pred HH
Q 046775 626 RF 627 (771)
Q Consensus 626 ~~ 627 (771)
+.
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 150
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.48 E-value=0.00029 Score=54.55 Aligned_cols=64 Identities=16% Similarity=0.111 Sum_probs=57.7
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC-CchhHHHHHHHHHh
Q 046775 567 NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAG-MWDNVAKVRRFMKD 630 (771)
Q Consensus 567 ~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g-~~~~a~~~~~~m~~ 630 (771)
++.+|..+...+...|+.+.|+..++++++++|+++.+|..++.+|...| ++++|.+.++...+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45688888899999999999999999999999999999999999999999 79999998876543
No 151
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.47 E-value=8.6e-05 Score=47.80 Aligned_cols=32 Identities=16% Similarity=0.361 Sum_probs=30.5
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHhcCCchhHH
Q 046775 591 AEMLFAIEPEKSSTHVLLSNIYASAGMWDNVA 622 (771)
Q Consensus 591 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 622 (771)
++++++++|+|+.+|..|+++|...|++++|.
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68899999999999999999999999999985
No 152
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.46 E-value=0.0041 Score=68.60 Aligned_cols=151 Identities=15% Similarity=0.141 Sum_probs=83.7
Q ss_pred CCCChhHHHHHHHHHHHcC-----ChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC
Q 046775 461 PDRGIVSWSAMIGGLAQHG-----RGKEALQMFGQMLEDGVLPNHI-TLVSVLCACNHAGLVAEAKHHFESMEKKFGIQP 534 (771)
Q Consensus 461 ~~~~~~~~~~li~~~~~~g-----~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p 534 (771)
...|...|...+.|..... ...+|+.+|++.++ ..||.. .+..+..++... ++..|
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~----------------~~~~~ 394 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVR----------------HSQQP 394 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHH----------------HhcCC
Confidence 3456677777777654322 36689999999998 678764 333322222110 01122
Q ss_pred CcchHHHHHHHHhhcCCHHHHHHHHHh---CC-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 046775 535 MQEHYACMIDILGRAGKFQEAMELVDT---MP-FQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSN 610 (771)
Q Consensus 535 ~~~~y~~lv~~l~r~g~~~eA~~~~~~---m~-~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 610 (771)
..+ ++++.+.+..++ ++ ...++.++.++.-.....|+.+.|...++++++++| +..+|+.++.
T Consensus 395 ~~~------------~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~ 461 (517)
T PRK10153 395 LDE------------KQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGK 461 (517)
T ss_pred ccH------------HHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 100 122222222222 12 122334565555555556777777777777777777 5667777777
Q ss_pred HHHhcCCchhHHHHHHHHHhCCCccCCccceEE
Q 046775 611 IYASAGMWDNVAKVRRFMKDNKLKKEPGMSWIE 643 (771)
Q Consensus 611 ~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~ 643 (771)
+|...|+.++|...++........ .|.+-|+|
T Consensus 462 ~~~~~G~~~eA~~~~~~A~~L~P~-~pt~~~~~ 493 (517)
T PRK10153 462 VYELKGDNRLAADAYSTAFNLRPG-ENTLYWIE 493 (517)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC-CchHHHHH
Confidence 777777777777776665554432 24444443
No 153
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.46 E-value=0.0028 Score=57.51 Aligned_cols=51 Identities=16% Similarity=0.127 Sum_probs=26.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHH
Q 046775 576 GAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRF 627 (771)
Q Consensus 576 ~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 627 (771)
..+...|+.+.|...++.+ .-.|-.+..+.+++++|...|++++|...++.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3334444444444444331 11222344555667777777777777666553
No 154
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.014 Score=56.11 Aligned_cols=144 Identities=15% Similarity=0.066 Sum_probs=89.1
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcH
Q 046775 441 VNMYAKCGSIDDADRAFSEIPDRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNH----AGLV 516 (771)
Q Consensus 441 i~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~g~~ 516 (771)
...|.+.|++++|.+.......-+....|. ..+.+..+.+-|.+.+++|++- -+..|.+.|..|+.. .+.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~~lE~~Al~V--qI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGENLEAAALNV--QILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hHHhhcCCChHHHHHHHhccchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhh
Confidence 445777788888887777644333333332 2234455677777777777762 245566655555432 2334
Q ss_pred HHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046775 517 AEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMPFQANASVWGALLGAARIYKNVEVGQHAAEMLFA 596 (771)
Q Consensus 517 ~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~ 596 (771)
.+|.-+|+.|.++ ..|+..+.+-.+..|-..+|+++|+...+.++.
T Consensus 190 qdAfyifeE~s~k----------------------------------~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 190 QDAFYIFEELSEK----------------------------------TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred hhHHHHHHHHhcc----------------------------------cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 4444455544432 355555666666667777788888888888888
Q ss_pred cCCCCchhHHHHHHHHHhcCCchhHHH
Q 046775 597 IEPEKSSTHVLLSNIYASAGMWDNVAK 623 (771)
Q Consensus 597 l~p~~~~~~~~l~~~y~~~g~~~~a~~ 623 (771)
-+|+++.++..+.-.--..|+-.++..
T Consensus 236 kd~~dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 236 KDAKDPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred ccCCCHHHHHHHHHHHHHhCCChHHHH
Confidence 888887777766666666777666543
No 155
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.44 E-value=0.33 Score=54.71 Aligned_cols=122 Identities=14% Similarity=0.161 Sum_probs=76.6
Q ss_pred hcCChhHHHHHHccCCC--CCcccHHHHHHHH--HhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhcCCcHHHHHH
Q 046775 143 KVGNLEDAVAVFKDIEH--PDIVSWNAVIAGC--VLHEHNDWALKLFQQMKSSEINPNMFTYTSALKACAGMELKELGRQ 218 (771)
Q Consensus 143 ~~g~~~~A~~~f~~~~~--~~~~~~n~li~~~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 218 (771)
..+++..|.+..+.+.. ||. .|...+.++ .+.|+.++|..+++.....+.. |..|...+-..|...+..+++..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 44667777776666543 333 344444444 4667888888777776655444 67777777777777888888888
Q ss_pred HHHHHHHccCCCChhHHHHHHHhhhcCCChH----HHHHHhhhCCCCCeehHHH
Q 046775 219 LHCSLIKMEIKSDPIVGVGLVDMYAKCGSMD----EARMIFHLMPEKNLIAWNI 268 (771)
Q Consensus 219 l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~----~A~~~f~~m~~~~~~~~~~ 268 (771)
+++++.+.. |+......+-.+|.+.+++. .|.+++...+++--.-|+.
T Consensus 99 ~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV 150 (932)
T KOG2053|consen 99 LYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV 150 (932)
T ss_pred HHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH
Confidence 887776643 34555555666666666543 3556666665554445544
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.41 E-value=0.0022 Score=55.70 Aligned_cols=100 Identities=14% Similarity=0.079 Sum_probs=49.8
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC----HhHHHHHHHHHH
Q 046775 506 VLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAMELVDTMP-FQAN----ASVWGALLGAAR 579 (771)
Q Consensus 506 ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p~----~~~~~~ll~a~~ 579 (771)
+...+...|++++|.+.|..+.+.+.-.|. ...+..+..++.+.|++++|.+.+++.. ..|+ ..+|..+..++.
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 87 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ 87 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH
Confidence 333344445555555555554433211110 1233334555555555555555555431 1222 234555555666
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhH
Q 046775 580 IYKNVEVGQHAAEMLFAIEPEKSSTH 605 (771)
Q Consensus 580 ~~~~~~~a~~~~~~~~~l~p~~~~~~ 605 (771)
..|+.+.|...++++++..|+++.+.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 88 ELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HhCChHHHHHHHHHHHHHCcCChhHH
Confidence 66777777777777777777665443
No 157
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.41 E-value=0.21 Score=51.52 Aligned_cols=121 Identities=16% Similarity=0.156 Sum_probs=87.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 046775 438 NSLVNMYAKCGSIDDADRAFSEIPDRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVA 517 (771)
Q Consensus 438 ~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~ 517 (771)
+..|.-+...|+...|.++-.+..-||-.-|...+.+|+..|++++-..+... +-.++-|-..+.+|...|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 33455556678899999999888888888999999999999998877665432 223477888888999999999
Q ss_pred HHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 046775 518 EAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMPFQANASVWGALLGAA 578 (771)
Q Consensus 518 ~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~ 578 (771)
+|..|...+. +.--+++|.++|.+.+|.+.--+. -|...+..+...|
T Consensus 255 eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~---kd~~~L~~i~~~~ 301 (319)
T PF04840_consen 255 EASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE---KDIDLLKQILKRC 301 (319)
T ss_pred HHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc---CCHHHHHHHHHHC
Confidence 9988877632 355678889999999887765442 2444444444433
No 158
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.37 E-value=0.064 Score=62.09 Aligned_cols=147 Identities=12% Similarity=0.153 Sum_probs=80.8
Q ss_pred hHHHHHHHhhcCCcHHHHHHHHHHHHHccCCCChhHHHHHHHhhhcCCChHHHHHHhhhCCCCCeehHHHHHHHHHhCCC
Q 046775 199 TYTSALKACAGMELKELGRQLHCSLIKMEIKSDPIVGVGLVDMYAKCGSMDEARMIFHLMPEKNLIAWNIVISGHLQNGG 278 (771)
Q Consensus 199 t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~ 278 (771)
.+..+..+|.+.|+.+++..+++.+++.. +.|+.+.|.+...|+.. ++++|..++.+. +..|....+
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~kq 184 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKKQ 184 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhhc
Confidence 44445555555666666666666666555 34566666666666666 677776665543 233556666
Q ss_pred hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCChhHHHHHHHHHHHh-cCCCchHHHhHHHHHHHhcCCHHHHHHHHH
Q 046775 279 DMEAASLFPWMYREGVGFDQTTLSTVLKSVASFQAIGVCKQVHALSVKT-AFESDDYIVNSLIDAYGKCGHVEDAVKIFK 357 (771)
Q Consensus 279 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~ 357 (771)
+.++.+++.++.... |+.+.+ -.++...+..+ |+..-..++-.|-..|-+..+++++..+|+
T Consensus 185 ~~~~~e~W~k~~~~~--~~d~d~---------------f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 185 YVGIEEIWSKLVHYN--SDDFDF---------------FLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred chHHHHHHHHHHhcC--cccchH---------------HHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 777777777666542 222221 12222222222 333334445556666777777777777777
Q ss_pred hcCC---CceecHHHHHHHHH
Q 046775 358 ESSA---VDLVACTSMITAYA 375 (771)
Q Consensus 358 ~~~~---~~~~~~~~li~~~~ 375 (771)
.+.+ .|..+..-++..|.
T Consensus 248 ~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 248 KILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHhcCCcchhhHHHHHHHHH
Confidence 6543 34444455555554
No 159
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.36 E-value=0.0019 Score=56.15 Aligned_cols=96 Identities=11% Similarity=0.019 Sum_probs=80.5
Q ss_pred chHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---chhHHHH
Q 046775 537 EHYACMIDILGRAGKFQEAMELVDTMP-FQAN----ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEK---SSTHVLL 608 (771)
Q Consensus 537 ~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~---~~~~~~l 608 (771)
..+-..+..+.+.|++++|.+.++++. ..|+ ...+..+..++...|+.+.|...++.++...|++ +..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 346677888899999999999998873 3343 2366667888899999999999999999999875 5678899
Q ss_pred HHHHHhcCCchhHHHHHHHHHhCC
Q 046775 609 SNIYASAGMWDNVAKVRRFMKDNK 632 (771)
Q Consensus 609 ~~~y~~~g~~~~a~~~~~~m~~~g 632 (771)
+.+|...|++++|.+.++.+.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999887764
No 160
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.35 E-value=0.00053 Score=52.25 Aligned_cols=57 Identities=16% Similarity=0.127 Sum_probs=44.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 046775 575 LGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 575 l~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
...+...|+++.|+..++++++.+|+++.++..++.+|...|++++|..+++.+.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445667788888888888888888888888888888888888888888888776543
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.33 E-value=0.0044 Score=58.10 Aligned_cols=129 Identities=14% Similarity=0.079 Sum_probs=88.9
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHH
Q 046775 465 IVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPN--HITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYAC 541 (771)
Q Consensus 465 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~ 541 (771)
...+..+...|...|++++|+..|++.......|+ ...+..+...+.+.|++++|..++++..+. .|+ ...+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~ 111 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHH
Confidence 45677777788888999999999998887433332 246777777888888888888888887753 443 455666
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 046775 542 MIDILGRAGKFQEAMELVDTMPFQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGM 617 (771)
Q Consensus 542 lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 617 (771)
+..++...|+...|..-.+.. ....+.|...++++++++|++ |..+.+.+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 677777777765555333221 122577888999999999977 5555566665554
No 162
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.32 E-value=0.0073 Score=56.35 Aligned_cols=110 Identities=15% Similarity=0.098 Sum_probs=74.6
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHH
Q 046775 465 IVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPN--HITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYAC 541 (771)
Q Consensus 465 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~ 541 (771)
...|..+...+...|++++|+..|++.......|. ..++..+...+.+.|+.++|+.++++..+. .|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~---~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER---NPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCcHHHHHH
Confidence 45677777888888888888888888877432222 236777778888888888888888887643 443 444555
Q ss_pred HHHHHh-------hcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 046775 542 MIDILG-------RAGKFQEAMELVDTMPFQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKS 602 (771)
Q Consensus 542 lv~~l~-------r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~ 602 (771)
+..++. +.|++++|...+ +.|...++++++.+|++.
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~-------------------------~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWF-------------------------DQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHH-------------------------HHHHHHHHHHHHhCcccH
Confidence 555555 445555544433 356778888888888554
No 163
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.31 E-value=0.01 Score=53.80 Aligned_cols=114 Identities=19% Similarity=0.170 Sum_probs=58.9
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCc--chHHHHHHHHhhcCC
Q 046775 478 HGRGKEALQMFGQMLEDGVLPNH----ITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQ--EHYACMIDILGRAGK 551 (771)
Q Consensus 478 ~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~--~~y~~lv~~l~r~g~ 551 (771)
.++...+...++++... .|+. .....+...+...|++++|...|+..... .-.|.. ...-.+..++...|+
T Consensus 24 ~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~ 100 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQ 100 (145)
T ss_pred CCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCC
Confidence 55556666666666653 2222 12223334555566666666666666544 211211 123334556666666
Q ss_pred HHHHHHHHHhCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 046775 552 FQEAMELVDTMPFQA-NASVWGALLGAARIYKNVEVGQHAAEML 594 (771)
Q Consensus 552 ~~eA~~~~~~m~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~ 594 (771)
+++|+..++..+..+ ....+..+...+...|+.+.|..+++++
T Consensus 101 ~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 101 YDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 666666665543222 2234444455666666666666666654
No 164
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.28 E-value=0.0026 Score=67.20 Aligned_cols=102 Identities=17% Similarity=0.086 Sum_probs=60.2
Q ss_pred hccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHH
Q 046775 511 NHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAMELVDTM-PFQAN-ASVWGALLGAARIYKNVEVG 587 (771)
Q Consensus 511 ~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~~~~a 587 (771)
...|++++|+.+|++..+. .|+ ...|..+..+|.+.|++++|+..+++. .+.|+ ...|..+..++...|+++.|
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 3344555555555554432 332 334445555555555666655555554 23443 33666666677777788888
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 046775 588 QHAAEMLFAIEPEKSSTHVLLSNIYASA 615 (771)
Q Consensus 588 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 615 (771)
...++++++++|+++.....+..+....
T Consensus 90 ~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 90 KAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 8888888888888777777666554443
No 165
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.032 Score=53.74 Aligned_cols=161 Identities=15% Similarity=0.041 Sum_probs=116.7
Q ss_pred hhHHHHHHHHHHHcCChHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHH
Q 046775 465 IVSWSAMIGGLAQHGRGKEAL-QMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMI 543 (771)
Q Consensus 465 ~~~~~~li~~~~~~g~~~~A~-~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv 543 (771)
......+......-++-++-+ ++.+.+.......|.+....-..-|.|.|+.++|.+..... -+.+....=|
T Consensus 72 lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-------~~lE~~Al~V 144 (299)
T KOG3081|consen 72 LQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-------ENLEAAALNV 144 (299)
T ss_pred HHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-------chHHHHHHHH
Confidence 333333333334444444443 44555655545555555555556799999999999887652 2456667778
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCch
Q 046775 544 DILGRAGKFQEAMELVDTMPFQANASVWGALLGAARI----YKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWD 619 (771)
Q Consensus 544 ~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~----~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 619 (771)
..+.|..+++-|.+.+++|..-.+..+.+.|..+... -+.+..|..+++.+-+.-|..+-...-.+.++...|||+
T Consensus 145 qI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~e 224 (299)
T KOG3081|consen 145 QILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYE 224 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHH
Confidence 8899999999999999999755555677777776643 235888889999999866668888888999999999999
Q ss_pred hHHHHHHHHHhCC
Q 046775 620 NVAKVRRFMKDNK 632 (771)
Q Consensus 620 ~a~~~~~~m~~~g 632 (771)
+|..+.+...++.
T Consensus 225 eAe~lL~eaL~kd 237 (299)
T KOG3081|consen 225 EAESLLEEALDKD 237 (299)
T ss_pred HHHHHHHHHHhcc
Confidence 9999998887664
No 166
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.21 E-value=0.42 Score=50.89 Aligned_cols=210 Identities=14% Similarity=0.159 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---CHHHHHHHHhhCC---CCC-hhHHHHHHHHHHHcCChHHHHHHH
Q 046775 416 EQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCG---SIDDADRAFSEIP---DRG-IVSWSAMIGGLAQHGRGKEALQMF 488 (771)
Q Consensus 416 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g---~~~~A~~~f~~~~---~~~-~~~~~~li~~~~~~g~~~~A~~l~ 488 (771)
+++..+++..+..-...+..+|.++.+.--..- ..+.....+++.. ..+ ..+|-..+..-.+..-.+.|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 344555555554433344455555443221111 1333444444443 122 346777777777777789999999
Q ss_pred HHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCC---C
Q 046775 489 GQMLEDGVLPNHI-TLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMP---F 564 (771)
Q Consensus 489 ~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~---~ 564 (771)
.+..+.+..+-++ ...+++. |--.++.+-|.++|+.=.+.||-.|. --.+.+|-|.+-|+-..|..+|++.- .
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mE-y~cskD~~~AfrIFeLGLkkf~d~p~--yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALME-YYCSKDKETAFRIFELGLKKFGDSPE--YVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHH-HHhcCChhHHHHHHHHHHHhcCCChH--HHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 9999998888444 4444444 44568899999999998888765554 34677899999999999999999872 3
Q ss_pred CCCH--hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch----hHHHHHHHHHhcCCchhHHHHHHHH
Q 046775 565 QANA--SVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSS----THVLLSNIYASAGMWDNVAKVRRFM 628 (771)
Q Consensus 565 ~p~~--~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~----~~~~l~~~y~~~g~~~~a~~~~~~m 628 (771)
.|+. .+|..+|.--..-||+.....+-++.+..-|.+.. .-..+...|.=.+.+..-..-.+.|
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 4554 49999999999999999999998888877662211 1223445666666666554444444
No 167
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.20 E-value=0.012 Score=59.75 Aligned_cols=144 Identities=17% Similarity=0.195 Sum_probs=100.9
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHH
Q 046775 466 VSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCA-CNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMID 544 (771)
Q Consensus 466 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~ 544 (771)
.+|-.++....+.+..+.|..+|.+.++.+ .-+...|...... +...++.+.|.++|+...+.| ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 357777777777777888888888887542 2233344444333 334567777999999988876 445667888899
Q ss_pred HHhhcCCHHHHHHHHHhCC-CCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 046775 545 ILGRAGKFQEAMELVDTMP-FQAN----ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYA 613 (771)
Q Consensus 545 ~l~r~g~~~eA~~~~~~m~-~~p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 613 (771)
.+.+.|+.+.|..+|++.- .-|. ..+|...+.--..+|+++....+.+++.++-|++... ..+++=|.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~-~~f~~ry~ 151 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL-ELFSDRYS 151 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH-HHHHCCT-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH-HHHHHHhh
Confidence 9999999999999998863 2232 3499999999999999999999999999999875443 33444443
No 168
>PRK15331 chaperone protein SicA; Provisional
Probab=97.18 E-value=0.0025 Score=57.22 Aligned_cols=100 Identities=9% Similarity=0.060 Sum_probs=79.9
Q ss_pred CCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 046775 531 GIQPM-QEHYACMIDILGRAGKFQEAMELVDTMP-FQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVL 607 (771)
Q Consensus 531 ~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~ 607 (771)
|+.++ .+..-....-+-..|++++|..+|+-+- ..| +..-|..|...|...++.+.|...+..+..++++||.++..
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 45444 2222233344557899999999888763 333 45578889889999999999999999999999999999999
Q ss_pred HHHHHHhcCCchhHHHHHHHHHh
Q 046775 608 LSNIYASAGMWDNVAKVRRFMKD 630 (771)
Q Consensus 608 l~~~y~~~g~~~~a~~~~~~m~~ 630 (771)
.+.+|-..|+.+.|...+....+
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999998886654
No 169
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.003 Score=62.17 Aligned_cols=107 Identities=14% Similarity=0.107 Sum_probs=88.9
Q ss_pred CCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCCchhHHHH
Q 046775 534 PMQEHYACMIDILGRAGKFQEAMELVDTM-PFQA-NASVWGALLGAARIY---KNVEVGQHAAEMLFAIEPEKSSTHVLL 608 (771)
Q Consensus 534 p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~---~~~~~a~~~~~~~~~l~p~~~~~~~~l 608 (771)
-|.+-|-.|...|.+.|++.+|..-+.+. .+.| ++.+|..+..+.... .....+..++++++.+||.|..+..+|
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 35889999999999999999999999877 3444 455777777766443 357889999999999999999999999
Q ss_pred HHHHHhcCCchhHHHHHHHHHhCCCccCCccc
Q 046775 609 SNIYASAGMWDNVAKVRRFMKDNKLKKEPGMS 640 (771)
Q Consensus 609 ~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s 640 (771)
+-.+...|++.+|...|+.|.+....-.|..+
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~ 265 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLLPADDPRRS 265 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCCCCCchHH
Confidence 99999999999999999999988764444433
No 170
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.17 E-value=0.0014 Score=49.96 Aligned_cols=61 Identities=13% Similarity=0.206 Sum_probs=48.7
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 046775 542 MIDILGRAGKFQEAMELVDTM-PFQANA-SVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKS 602 (771)
Q Consensus 542 lv~~l~r~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~ 602 (771)
+...+.+.|++++|.+.+++. ...|+. .+|..+...+...|+.+.|...++++++.+|+||
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 355677888888888888877 356754 4888888899999999999999999999999875
No 171
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.12 E-value=0.0031 Score=58.84 Aligned_cols=92 Identities=8% Similarity=-0.117 Sum_probs=70.4
Q ss_pred cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 046775 536 QEHYACMIDILGRAGKFQEAMELVDTM-PFQAN----ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSN 610 (771)
Q Consensus 536 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 610 (771)
...|..++..+...|++++|+..+++. ...|+ ..+|..+...+...|+.+.|...++++++++|.+..++..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 344556666677778888888777765 22232 2478888888899999999999999999999999999999999
Q ss_pred HHH-------hcCCchhHHHHHHH
Q 046775 611 IYA-------SAGMWDNVAKVRRF 627 (771)
Q Consensus 611 ~y~-------~~g~~~~a~~~~~~ 627 (771)
+|. ..|++++|...++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHH
Confidence 999 77788766555543
No 172
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.58 Score=51.85 Aligned_cols=341 Identities=16% Similarity=0.068 Sum_probs=179.9
Q ss_pred CCCCCChhhHH-----HHHHHhhcCCcHHHHHHHHHHHHHccCCCChhHHHHHHHhhhcCCC---hHHHHHHhhhCCC--
Q 046775 191 SEINPNMFTYT-----SALKACAGMELKELGRQLHCSLIKMEIKSDPIVGVGLVDMYAKCGS---MDEARMIFHLMPE-- 260 (771)
Q Consensus 191 ~g~~p~~~t~~-----~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~---~~~A~~~f~~m~~-- 260 (771)
-|++.+..-|. .++.-+...+.+..|.++-..+--.-... ..++.....-+.+..+ -+-+..+=+++..
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 35555444443 33444455556666666655543221122 5666666666665532 2334444444444
Q ss_pred CCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCC----CCHhhHHHHHHHHhccCChhHHHHHHHHHHHhcCCCchHHH
Q 046775 261 KNLIAWNIVISGHLQNGGDMEAASLFPWMYREGVG----FDQTTLSTVLKSVASFQAIGVCKQVHALSVKTAFESDDYIV 336 (771)
Q Consensus 261 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~ 336 (771)
...++|..+.+--.+.|+.+-|..+++.=...+-+ .+..-+...|.-+...|+.+...++.-.+...-..
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~------ 578 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNR------ 578 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHH------
Confidence 55677777777777788888887776543222211 12223445556666667766666655544432100
Q ss_pred hHHHHHHHhcCCHHHHHHHHHhcCC-CceecHHHHHHHHHHcCChHHHHHHHH--HHhc-CCCCCCHhhHHHHHHHhhcc
Q 046775 337 NSLIDAYGKCGHVEDAVKIFKESSA-VDLVACTSMITAYAQFGLGEEALKLYL--EMQD-REINPDSFVCSSLLNACANL 412 (771)
Q Consensus 337 ~~Li~~y~k~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~--~m~~-~g~~p~~~t~~~ll~a~~~~ 412 (771)
-+...-..+...|..++.+.-. .|.. .+-+.|-+..+ .+++.-|. .... .-+.+-.......-.+|++.
T Consensus 579 ---s~l~~~l~~~p~a~~lY~~~~r~~~~~---~l~d~y~q~dn-~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~s 651 (829)
T KOG2280|consen 579 ---SSLFMTLRNQPLALSLYRQFMRHQDRA---TLYDFYNQDDN-HQALASFHLQASYAAETIEGRIPALKTAANAFAKS 651 (829)
T ss_pred ---HHHHHHHHhchhhhHHHHHHHHhhchh---hhhhhhhcccc-hhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhh
Confidence 0001111122333333333211 1111 01111222222 22222221 1000 00222223334445556555
Q ss_pred cchHHHHHHHHHH-----------HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCCh
Q 046775 413 SAYEQGKQVHVHI-----------IKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPDRGIVSWSAMIGGLAQHGRG 481 (771)
Q Consensus 413 ~~~~~a~~i~~~~-----------~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~ 481 (771)
.....+.+..++. .+.|......+.+--+.-+..-|+..+|.++-.+..-||-..|--=+.+++..+++
T Consensus 652 k~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kw 731 (829)
T KOG2280|consen 652 KEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKW 731 (829)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhH
Confidence 4433222222111 12232222233344444556779999999999999988888888888999999988
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHh
Q 046775 482 KEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDT 561 (771)
Q Consensus 482 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~ 561 (771)
++-+++-+.+.. ++-|.-...+|.+.|+.+||.+|+.+.. | +.-.+++|.+.|.+.||.++--+
T Consensus 732 eeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYiprv~---~-------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 732 EELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVG---G-------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhhhhccC---C-------hHHHHHHHHHhccHHHHHHHHHH
Confidence 877766554432 4567778889999999999999977653 1 12568899999999998876543
No 173
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.11 E-value=0.004 Score=58.35 Aligned_cols=80 Identities=13% Similarity=0.076 Sum_probs=58.1
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhCC-CCC---C-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 046775 538 HYACMIDILGRAGKFQEAMELVDTMP-FQA---N-ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIY 612 (771)
Q Consensus 538 ~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p---~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 612 (771)
.|..+...+.+.|++++|...+++.- ..| + ...|..+...+...|+.+.|...++++++..|+++..+..++.+|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34455555556666666666555441 112 2 346777778888889999999999999999999999999999999
Q ss_pred HhcCC
Q 046775 613 ASAGM 617 (771)
Q Consensus 613 ~~~g~ 617 (771)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 88877
No 174
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.11 E-value=0.0092 Score=53.93 Aligned_cols=103 Identities=17% Similarity=0.286 Sum_probs=58.3
Q ss_pred HhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--Cc
Q 046775 528 KKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTM---PFQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPE--KS 602 (771)
Q Consensus 528 ~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m---~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~--~~ 602 (771)
++..+.|++.+--.+...+.+.|+..||...+++. ++.-|......+..+...-++...+...++.++|..|. .+
T Consensus 81 ~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p 160 (251)
T COG4700 81 EELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP 160 (251)
T ss_pred HHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC
Confidence 33345555555555666666666666666666554 34445555555555555556666666666666665553 34
Q ss_pred hhHHHHHHHHHhcCCchhHHHHHHHHHh
Q 046775 603 STHVLLSNIYASAGMWDNVAKVRRFMKD 630 (771)
Q Consensus 603 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 630 (771)
....+++..|+..|++++|..-++...+
T Consensus 161 d~~Ll~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 161 DGHLLFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred CchHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 4455556666666666666555554443
No 175
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.08 E-value=0.098 Score=56.30 Aligned_cols=194 Identities=15% Similarity=0.189 Sum_probs=105.2
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHH
Q 046775 341 DAYGKCGHVEDAVKIFKESSAVDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQ 420 (771)
Q Consensus 341 ~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 420 (771)
+.++-.|++.+|-++|. ++|....|+++|..|+--. ...-+...|..++-+.
T Consensus 640 ~~~Ay~gKF~EAAklFk------------------~~G~enRAlEmyTDlRMFD----------~aQE~~~~g~~~eKKm 691 (1081)
T KOG1538|consen 640 DVFAYQGKFHEAAKLFK------------------RSGHENRALEMYTDLRMFD----------YAQEFLGSGDPKEKKM 691 (1081)
T ss_pred HHHHhhhhHHHHHHHHH------------------HcCchhhHHHHHHHHHHHH----------HHHHHhhcCChHHHHH
Confidence 44555677777777763 4566677777777765311 1122233344443333
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 046775 421 VHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPDRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNH 500 (771)
Q Consensus 421 i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 500 (771)
+...-..-. -++.--.+-..|+...|+.++|..+ .+.+|-.+-++++-+++-. .+.
T Consensus 692 L~RKRA~WA--r~~kePkaAAEmLiSaGe~~KAi~i------------------~~d~gW~d~lidI~rkld~----~er 747 (1081)
T KOG1538|consen 692 LIRKRADWA--RNIKEPKAAAEMLISAGEHVKAIEI------------------CGDHGWVDMLIDIARKLDK----AER 747 (1081)
T ss_pred HHHHHHHHh--hhcCCcHHHHHHhhcccchhhhhhh------------------hhcccHHHHHHHHHhhcch----hhh
Confidence 322211100 0000012234455566777666544 3344444555555444432 223
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHh-HHHHHH---
Q 046775 501 ITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMP-FQANAS-VWGALL--- 575 (771)
Q Consensus 501 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p~~~-~~~~ll--- 575 (771)
.+...+..-+-+...+.-|-++|.+|-. ...+|++....|+++||..+-++.| +.||+. -+...|
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEN 817 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhh
Confidence 3444443344445556667778877743 2467888888888888888888887 666654 222222
Q ss_pred -------HHHHhcCCHHHHHHHHHHHHh
Q 046775 576 -------GAARIYKNVEVGQHAAEMLFA 596 (771)
Q Consensus 576 -------~a~~~~~~~~~a~~~~~~~~~ 596 (771)
.|+.+.|+..+|.++++++-.
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 356677777888877777643
No 176
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.06 E-value=0.0015 Score=51.18 Aligned_cols=57 Identities=7% Similarity=0.042 Sum_probs=48.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 046775 576 GAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDNK 632 (771)
Q Consensus 576 ~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 632 (771)
..+...++.+.|..+++++++++|+++..+..++.+|...|+|++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 456778889999999999999999999999999999999999999998888776543
No 177
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.05 E-value=0.012 Score=64.94 Aligned_cols=49 Identities=10% Similarity=-0.044 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhc--CCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 046775 584 VEVGQHAAEMLFAI--EPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDNK 632 (771)
Q Consensus 584 ~~~a~~~~~~~~~l--~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 632 (771)
.+.+...++++..+ +|.++..|..++-++...|+|++|...++...+.+
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ 450 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE 450 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 45566666676664 78888899999999999999999999999888776
No 178
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.05 E-value=0.0017 Score=49.98 Aligned_cols=51 Identities=14% Similarity=0.259 Sum_probs=38.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHh
Q 046775 580 IYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKD 630 (771)
Q Consensus 580 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 630 (771)
..|+++.|...++++++.+|+|+..+..|+.+|.+.|++++|.++.+.+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 457778888888888888888888888888888888888888877764443
No 179
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.01 E-value=0.54 Score=48.51 Aligned_cols=106 Identities=22% Similarity=0.205 Sum_probs=83.7
Q ss_pred hHHHHHHHhcCCHHHHHHHHHhcCCCceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchH
Q 046775 337 NSLIDAYGKCGHVEDAVKIFKESSAVDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYE 416 (771)
Q Consensus 337 ~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 416 (771)
+.-+.-+...|....|.++-.+..-||-.-|-..|.+|+..++|++-.++... +-.+.-|..++.+|...|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 34455566788999999999999889999999999999999999887765432 224588999999999999988
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 046775 417 QGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFS 458 (771)
Q Consensus 417 ~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~ 458 (771)
+|..+...+ .+..-+.+|.+||++.+|.+.--
T Consensus 255 eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 255 EASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHH
Confidence 887776651 22567889999999999876643
No 180
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.94 E-value=0.0098 Score=48.48 Aligned_cols=88 Identities=22% Similarity=0.224 Sum_probs=44.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHH
Q 046775 468 WSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNH-ITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDI 545 (771)
Q Consensus 468 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~ 545 (771)
|..+...+...|++++|+..|++..+. .|+. ..+..+...+...|++++|.++|+..... .|. ...+..++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~ 77 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL---DPDNAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCcchhHHHHHHHH
Confidence 444555566666666666666666653 3332 34445555555556666666666555432 222 2234444444
Q ss_pred HhhcCCHHHHHHHHH
Q 046775 546 LGRAGKFQEAMELVD 560 (771)
Q Consensus 546 l~r~g~~~eA~~~~~ 560 (771)
+...|++++|.+.++
T Consensus 78 ~~~~~~~~~a~~~~~ 92 (100)
T cd00189 78 YYKLGKYEEALEAYE 92 (100)
T ss_pred HHHHHhHHHHHHHHH
Confidence 444444444444443
No 181
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.92 E-value=0.0086 Score=58.70 Aligned_cols=99 Identities=20% Similarity=0.266 Sum_probs=79.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcC
Q 046775 473 GGLAQHGRGKEALQMFGQMLEDGVLP-NHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAG 550 (771)
Q Consensus 473 ~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g 550 (771)
.-..+.+++++|+..|.+.++ +.| |.+-|..-..||++.|..+.|++-.+... .+.|. ...|..|.-+|.-.|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccC
Confidence 345678899999999999999 565 45567777889999999999998877766 55776 678999999999999
Q ss_pred CHHHHHHHHHhC-CCCCCHhHHHHHHH
Q 046775 551 KFQEAMELVDTM-PFQANASVWGALLG 576 (771)
Q Consensus 551 ~~~eA~~~~~~m-~~~p~~~~~~~ll~ 576 (771)
++++|.+.|++. .++|+..+|.+=|.
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 999999998887 58888776644443
No 182
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.91 E-value=0.00096 Score=51.35 Aligned_cols=61 Identities=20% Similarity=0.265 Sum_probs=26.4
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 046775 549 AGKFQEAMELVDTM-PFQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLS 609 (771)
Q Consensus 549 ~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 609 (771)
.|++++|+++++++ ...| +..++..+..++...|+.+.|+..++++...+|+++..+.+++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 34444444444443 1223 2334444444444445555555555555555554444444433
No 183
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.88 E-value=0.018 Score=54.05 Aligned_cols=123 Identities=18% Similarity=0.171 Sum_probs=77.8
Q ss_pred CCHhhHHHHHHHhh-----cccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHH
Q 046775 397 PDSFVCSSLLNACA-----NLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPDRGIVSWSAM 471 (771)
Q Consensus 397 p~~~t~~~ll~a~~-----~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~l 471 (771)
-|..+|..++..+. +.|..+-....+..|.+.|+..|..+|+.|++.+=| |.+- .++ .+.++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv----------p~n--~fQ~~ 111 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV----------PRN--FFQAE 111 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc----------ccc--HHHHH
Confidence 34555555555553 335666667777888889999999999999988754 2221 111 11122
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcH-HHHHHHHHHHHHhhCCCC
Q 046775 472 IGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLV-AEAKHHFESMEKKFGIQP 534 (771)
Q Consensus 472 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~-~~a~~~~~~m~~~~~i~p 534 (771)
..-| ..+-+-|++++++|...|+-||..|+..|+..+...+.. ...++....|.+-.++.|
T Consensus 112 F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpkfk~~nP 173 (228)
T PF06239_consen 112 FMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPKFKNINP 173 (228)
T ss_pred hccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhccCC
Confidence 2212 234577899999999999999999999999998766542 233444444443333444
No 184
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.88 E-value=0.0016 Score=52.70 Aligned_cols=80 Identities=20% Similarity=0.293 Sum_probs=50.2
Q ss_pred cCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHH
Q 046775 478 HGRGKEALQMFGQMLEDGV-LPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEA 555 (771)
Q Consensus 478 ~g~~~~A~~l~~~m~~~g~-~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA 555 (771)
.|+++.|+.+|+++.+..- .|+...+..+..++.+.|++++|..+++. . .+.|+ ....-.+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 5777888888888887432 12344455567778888888888888877 2 22332 23333447777788888888
Q ss_pred HHHHHh
Q 046775 556 MELVDT 561 (771)
Q Consensus 556 ~~~~~~ 561 (771)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 877764
No 185
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.78 E-value=0.024 Score=48.83 Aligned_cols=91 Identities=19% Similarity=0.198 Sum_probs=68.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC-CcchHHHHHHHHh
Q 046775 471 MIGGLAQHGRGKEALQMFGQMLEDGVLPNH--ITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQP-MQEHYACMIDILG 547 (771)
Q Consensus 471 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~ 547 (771)
+..++-..|+.++|+.+|++....|..+.. ..+..+.+++.+.|++++|..+|+.....+.-.+ +......+...+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 456778899999999999999998877653 3678888999999999999999999887642211 1122233445778
Q ss_pred hcCCHHHHHHHHHh
Q 046775 548 RAGKFQEAMELVDT 561 (771)
Q Consensus 548 r~g~~~eA~~~~~~ 561 (771)
..|+.+||.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 88999999887644
No 186
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.73 E-value=0.014 Score=48.47 Aligned_cols=80 Identities=8% Similarity=-0.034 Sum_probs=66.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhHHCCC-CCCcchHHHHHHHHhcCC--------CcHHHHHHHHHHHHhCCCCChhhH
Q 046775 64 WNSLFSCYVHCDFLEEAVCFFKEMVLSGI-RPNEFSLSSMINACAGSG--------DSLLGRKIHGYSIKLGYDSDMFSA 134 (771)
Q Consensus 64 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~i~~~~~~~g~~~~~~~~ 134 (771)
-...|..+..++++.....+|+.+++.|+ .|+..+|+.+|.+.+++. .+-....+++.|+..++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666777999999999999999999 899999999999987653 234567888899999999999999
Q ss_pred HHHHHHHHh
Q 046775 135 NALVDMYAK 143 (771)
Q Consensus 135 ~~Li~~y~~ 143 (771)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 998887654
No 187
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.70 E-value=0.03 Score=59.37 Aligned_cols=120 Identities=13% Similarity=0.084 Sum_probs=85.9
Q ss_pred CCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCChhH
Q 046775 394 EINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKF--GFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIP----DRGIVS 467 (771)
Q Consensus 394 g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~--g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~----~~~~~~ 467 (771)
+.+.+...+..++..+.+..+++.+..++-..... ....-+.+..++|..|.+.|..+++..+++.=. -+|..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44556777777777777777777777776666554 222233444578888888888888888776544 366778
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 046775 468 WSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHA 513 (771)
Q Consensus 468 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 513 (771)
+|.++..+.+.|++..|.+++.+|...+...+..|+..-+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888887777777777777777777665
No 188
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.66 E-value=0.017 Score=51.64 Aligned_cols=93 Identities=11% Similarity=0.028 Sum_probs=67.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhc
Q 046775 437 GNSLVNMYAKCGSIDDADRAFSEIP---DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPN-HITLVSVLCACNH 512 (771)
Q Consensus 437 ~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~ 512 (771)
.-++..-+...|++++|..+|+-.. ..+..-|-.|...+-..|++++|+..|...... .|| ...+-.+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L--~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI--KIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHHHHHHHH
Confidence 3344555567788888888888665 334567778888888888888888888888874 454 4467777777888
Q ss_pred cCcHHHHHHHHHHHHHhhC
Q 046775 513 AGLVAEAKHHFESMEKKFG 531 (771)
Q Consensus 513 ~g~~~~a~~~~~~m~~~~~ 531 (771)
.|+.+.|++.|+.....-+
T Consensus 116 lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 116 CDNVCYAIKALKAVVRICG 134 (157)
T ss_pred cCCHHHHHHHHHHHHHHhc
Confidence 8888888888887765533
No 189
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.62 E-value=0.0042 Score=42.83 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 046775 569 SVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSN 610 (771)
Q Consensus 569 ~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 610 (771)
.+|..|..++...|+.+.|+++++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 368888999999999999999999999999999999888764
No 190
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.59 E-value=0.026 Score=59.85 Aligned_cols=120 Identities=13% Similarity=0.079 Sum_probs=82.1
Q ss_pred CCCCCHhhHHHHHHHHhccCChhHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhcCCHHHHHHHHHhcCC----Cceec
Q 046775 293 GVGFDQTTLSTVLKSVASFQAIGVCKQVHALSVKT--AFESDDYIVNSLIDAYGKCGHVEDAVKIFKESSA----VDLVA 366 (771)
Q Consensus 293 g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~--g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~----~~~~~ 366 (771)
+.+.+...+..++..+.+..+++.++.++-..... ....-+.+..++|+.|.+.|..+.+..+++.-.. +|..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44556667777777777777777777776666554 2223334445777777777777777777765333 67777
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcc
Q 046775 367 CTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANL 412 (771)
Q Consensus 367 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 412 (771)
+|.+|..+.+.|++..|.++..+|...+...++.|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777777777766667777777666666554
No 191
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.58 E-value=0.049 Score=55.44 Aligned_cols=129 Identities=13% Similarity=0.077 Sum_probs=71.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHH-hhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 046775 367 CTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNA-CANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYA 445 (771)
Q Consensus 367 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~ 445 (771)
|-.++...-+.+..+.|-.+|.+..+.+ ..+...|...... +...++.+.|..|++...+. ++.+...+...++++.
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 4444444445555555555555554321 1112222222111 22234555566666666654 4566777777777777
Q ss_pred hcCCHHHHHHHHhhCCCC------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 046775 446 KCGSIDDADRAFSEIPDR------GIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPN 499 (771)
Q Consensus 446 k~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 499 (771)
+.|+.+.|+.+|++.... -...|...+.-=.+.|+.+.+..+.+++.+ ..|+
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~ 139 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPE 139 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTT
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--Hhhh
Confidence 777777777777766521 124677777777777777777777777776 3444
No 192
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.56 E-value=0.18 Score=48.55 Aligned_cols=167 Identities=14% Similarity=0.044 Sum_probs=111.7
Q ss_pred HhHHHHHHHhcCCHHHHHHHHHhcCC--Cceec--------HHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHH
Q 046775 336 VNSLIDAYGKCGHVEDAVKIFKESSA--VDLVA--------CTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSL 405 (771)
Q Consensus 336 ~~~Li~~y~k~g~~~~A~~~f~~~~~--~~~~~--------~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 405 (771)
+++|...|.-..-+++-...|+.-.. ..+.. -+.++....-.|.+.-.+.++++.++...+.++.....+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 45666666655555555555554322 22222 345566666677788888888888886656677778888
Q ss_pred HHHhhcccchHHHHHHHHHHHHhCCCC-----chhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHH
Q 046775 406 LNACANLSAYEQGKQVHVHIIKFGFMS-----DTFAGNSLVNMYAKCGSIDDADRAFSEIPDR---GIVSWSAMIGGLAQ 477 (771)
Q Consensus 406 l~a~~~~~~~~~a~~i~~~~~~~g~~~-----~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~ 477 (771)
.+.-.+.|+.+.++..++...+..-.. ...+.......|.-..++.+|...|++++.. |++.-|.-.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 888888999999999988776653333 3333333444566677888888888887743 45666655555566
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHH
Q 046775 478 HGRGKEALQMFGQMLEDGVLPNHITLV 504 (771)
Q Consensus 478 ~g~~~~A~~l~~~m~~~g~~pd~~t~~ 504 (771)
.|+..+|++..+.|++ ..|...+-.
T Consensus 299 lg~l~DAiK~~e~~~~--~~P~~~l~e 323 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQ--QDPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHHHHhc--cCCccchhh
Confidence 7889999999999988 456555433
No 193
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.53 E-value=0.66 Score=48.36 Aligned_cols=186 Identities=17% Similarity=0.146 Sum_probs=96.8
Q ss_pred HHHHHHcCChHHHHHHHHHHhcCCC--CC-CHhhHHHHHHHhhc---ccchHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 046775 371 ITAYAQFGLGEEALKLYLEMQDREI--NP-DSFVCSSLLNACAN---LSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMY 444 (771)
Q Consensus 371 i~~~~~~g~~~~A~~l~~~m~~~g~--~p-~~~t~~~ll~a~~~---~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y 444 (771)
+-+|-...+++.-+++.+.|...-. .+ ....--...-|..+ .|+.+.|++++..+....-.+++.++..+...|
T Consensus 148 llSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 148 LLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred HHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 3356666677777777777664310 01 11111112223334 667777777777655544456665555555444
Q ss_pred HhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 046775 445 AKCGSIDDADRAFSEIPDRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFE 524 (771)
Q Consensus 445 ~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~ 524 (771)
-. .|.+....|..+ .++|+..|.+.-+ +.||..+=..++....-.|.-.+...-..
T Consensus 228 KD---------~~~~s~~~d~~~-------------ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~ 283 (374)
T PF13281_consen 228 KD---------LFLESNFTDRES-------------LDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELR 283 (374)
T ss_pred HH---------HHHHcCccchHH-------------HHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHH
Confidence 21 122221222222 5667777776666 45665432222222222332222111111
Q ss_pred HHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 046775 525 SMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMPFQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKS 602 (771)
Q Consensus 525 ~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~ 602 (771)
++. ..+-.++++.|..+. ..|--...+++.++...||.+.|.+++++++.+.|..-
T Consensus 284 ~i~------------~~l~~llg~kg~~~~----------~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 284 KIG------------VKLSSLLGRKGSLEK----------MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred HHH------------HHHHHHHHhhccccc----------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 111 122334555554332 23334567899999999999999999999999987543
No 194
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.45 E-value=0.25 Score=45.06 Aligned_cols=129 Identities=13% Similarity=0.108 Sum_probs=81.3
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCC-CCcchHHHHHHHHhhcCCHHHHHHHHHhC----C--CCCCHh
Q 046775 497 LPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQ-PMQEHYACMIDILGRAGKFQEAMELVDTM----P--FQANAS 569 (771)
Q Consensus 497 ~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~-p~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~--~~p~~~ 569 (771)
.|....-..+..+....|+..||...|++... |+- -|....-.+..+....++..+|...+++. | -.||..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 44444445555556666666666666655442 322 23334444455555556666666655554 1 234433
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHh
Q 046775 570 VWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKD 630 (771)
Q Consensus 570 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 630 (771)
..+...+...|..+.|+.+++.++..-| ++..-...+.+++++|+.+++..-....-+
T Consensus 164 --Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 --LLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred --HHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 3455667788899999999999999988 677777788899999999888765554443
No 195
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.33 E-value=0.52 Score=51.08 Aligned_cols=106 Identities=14% Similarity=0.225 Sum_probs=57.6
Q ss_pred HHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 046775 375 AQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDAD 454 (771)
Q Consensus 375 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~ 454 (771)
..+|-.+-++++-+++.. .+..+...+..-+-+...+..|.+||..+-.. .+++++....+++++|.
T Consensus 727 ~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAF 793 (1081)
T KOG1538|consen 727 GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAF 793 (1081)
T ss_pred hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhH
Confidence 334444445555444432 23334444444445556666777777665332 35677777888888888
Q ss_pred HHHhhCCC--CChh----HH-------HHHHHHHHHcCChHHHHHHHHHHHH
Q 046775 455 RAFSEIPD--RGIV----SW-------SAMIGGLAQHGRGKEALQMFGQMLE 493 (771)
Q Consensus 455 ~~f~~~~~--~~~~----~~-------~~li~~~~~~g~~~~A~~l~~~m~~ 493 (771)
.+-++.++ +|+. -| .-.-.+|-+.|+-++|..+++++..
T Consensus 794 alAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 794 ALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 88887773 3431 11 1122345555555566655555543
No 196
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.33 E-value=0.061 Score=48.75 Aligned_cols=109 Identities=15% Similarity=0.064 Sum_probs=71.2
Q ss_pred HhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 046775 510 CNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMPFQANASVWGALLGAARIYKNVEVGQH 589 (771)
Q Consensus 510 ~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~ 589 (771)
....|+.+.+...+..+...|.-.+=..... ........+.++++- ..++..++..+...|+.+.+..
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~--------~~W~~~~r~~l~~~~----~~~~~~l~~~~~~~~~~~~a~~ 83 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD--------EEWVEPERERLRELY----LDALERLAEALLEAGDYEEALR 83 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT--------STTHHHHHHHHHHHH----HHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc--------cHHHHHHHHHHHHHH----HHHHHHHHHHHHhccCHHHHHH
Confidence 3456677777777777766553222111000 112222223333221 1245667777888999999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHh
Q 046775 590 AAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKD 630 (771)
Q Consensus 590 ~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 630 (771)
.+++++.++|-|...|..|..+|...|+..+|.++++.++.
T Consensus 84 ~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 84 LLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887753
No 197
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.29 E-value=0.027 Score=43.32 Aligned_cols=63 Identities=25% Similarity=0.287 Sum_probs=51.5
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccC-cHHHHHHHHHHHHH
Q 046775 464 GIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHI-TLVSVLCACNHAG-LVAEAKHHFESMEK 528 (771)
Q Consensus 464 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g-~~~~a~~~~~~m~~ 528 (771)
+...|..+...+...|++++|+..|++.++ +.|+.. .+..+..++...| ++++|++.|++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 456788888889999999999999999888 457654 6777888888888 78999998888764
No 198
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.29 E-value=0.064 Score=53.62 Aligned_cols=103 Identities=14% Similarity=0.111 Sum_probs=59.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHH
Q 046775 468 WSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNH----ITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMI 543 (771)
Q Consensus 468 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv 543 (771)
|+..+..+.+.|++++|+..|+.++. ..|+. ..+..+..++...|++++|...|+.+.+.|...|.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~-------- 215 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK-------- 215 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc--------
Confidence 34334333455677777777777776 34543 24555556666666666666666666655322221
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 046775 544 DILGRAGKFQEAMELVDTMPFQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSS 603 (771)
Q Consensus 544 ~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~ 603 (771)
....|..+...+...|+.+.|...++++++..|++..
T Consensus 216 -----------------------~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 216 -----------------------AADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred -----------------------hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 1123333444555677777777777777777776554
No 199
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.25 E-value=2.5 Score=46.53 Aligned_cols=123 Identities=17% Similarity=0.246 Sum_probs=60.5
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCh---hHHHHHHHHH----HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 046775 441 VNMYAKCGSIDDADRAFSEIPDRGI---VSWSAMIGGL----AQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHA 513 (771)
Q Consensus 441 i~~y~k~g~~~~A~~~f~~~~~~~~---~~~~~li~~~----~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 513 (771)
|.++-|.|+.-+|.+++.+|.++.. +.+-.+-..| .-..+..++++-.++....|...|... +...
T Consensus 930 Ie~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles 1002 (1189)
T KOG2041|consen 930 IEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLES 1002 (1189)
T ss_pred HHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhh
Confidence 5677788887777777777763321 1111111111 111233445555555555554333222 1223
Q ss_pred CcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCC----CCCCHhHHHHH
Q 046775 514 GLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMP----FQANASVWGAL 574 (771)
Q Consensus 514 g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~----~~p~~~~~~~l 574 (771)
|...++-.+.+..-. -....||-.|..--.+.|+.+.|.+---.+. +-|-.-++.-|
T Consensus 1003 ~~l~~~~ri~~n~Wr----gAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySll 1063 (1189)
T KOG2041|consen 1003 GLLAEQSRILENTWR----GAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLL 1063 (1189)
T ss_pred hhhhhHHHHHHhhhh----hHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHH
Confidence 334444444332211 1234566666777778899998886544332 34445555544
No 200
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.23 E-value=0.025 Score=53.06 Aligned_cols=98 Identities=9% Similarity=0.132 Sum_probs=74.9
Q ss_pred HHHHHhcC--CCCCcchHHHHHHHHHhC-----CChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhcCC-----------
Q 046775 49 SRRLFDAI--PERSVVSWNSLFSCYVHC-----DFLEEAVCFFKEMVLSGIRPNEFSLSSMINACAGSG----------- 110 (771)
Q Consensus 49 A~~~f~~~--~~~~~~~~n~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~----------- 110 (771)
-...|+.. ..+|..+|..+|..|.+. |..+=....+..|.+.|+.-|..+|+.||..+-+..
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 34566665 457778888888887654 566666777888899999999999999998875422
Q ss_pred -----CcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCC
Q 046775 111 -----DSLLGRKIHGYSIKLGYDSDMFSANALVDMYAKVGN 146 (771)
Q Consensus 111 -----~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~ 146 (771)
+-+.|.+++++|...|+-||..++..|++.+++.+.
T Consensus 113 ~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 345688889999999999999999888888866553
No 201
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.23 E-value=0.031 Score=55.81 Aligned_cols=94 Identities=9% Similarity=-0.001 Sum_probs=70.7
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCH----hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---chhHHHHH
Q 046775 538 HYACMIDILGRAGKFQEAMELVDTMP-FQANA----SVWGALLGAARIYKNVEVGQHAAEMLFAIEPEK---SSTHVLLS 609 (771)
Q Consensus 538 ~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p~~----~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~---~~~~~~l~ 609 (771)
.|..-++++.+.|++++|...|+... ..|+. .++..+..++...|+.+.|...++++++..|++ +.++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 45555566566677777777766652 23332 355667778889999999999999999988875 55666779
Q ss_pred HHHHhcCCchhHHHHHHHHHhC
Q 046775 610 NIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 610 ~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
.+|...|++++|.++++...+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999877554
No 202
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.21 E-value=0.016 Score=60.76 Aligned_cols=64 Identities=13% Similarity=-0.111 Sum_probs=50.8
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh---HHHHHHHHHhcCCchhHHHHHHHHHhC
Q 046775 568 ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSST---HVLLSNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 568 ~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~---~~~l~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
...|..+..++...|+++.|...++++++++|+++.+ |..++.+|+..|+.++|...++...+.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4478888888888888888888888888888887744 888888888888888888877766654
No 203
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.21 E-value=0.28 Score=48.62 Aligned_cols=55 Identities=11% Similarity=-0.083 Sum_probs=34.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCcee---c---HHHHHHHHHHcCChHHHHHHHHHHhcC
Q 046775 339 LIDAYGKCGHVEDAVKIFKESSAVDLV---A---CTSMITAYAQFGLGEEALKLYLEMQDR 393 (771)
Q Consensus 339 Li~~y~k~g~~~~A~~~f~~~~~~~~~---~---~~~li~~~~~~g~~~~A~~l~~~m~~~ 393 (771)
....+.+.|++++|.+.|+++....+. . .-.+..+|-+.+++++|...|++..+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 334455677888888888776542221 1 123455667778888888888877764
No 204
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.18 E-value=0.11 Score=44.87 Aligned_cols=106 Identities=16% Similarity=0.081 Sum_probs=62.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHhcCCCCCCH--hhHHHHHHHhhcccchHHHHHHHHHHHHhCCCC---chhHHHHHHHHH
Q 046775 370 MITAYAQFGLGEEALKLYLEMQDREINPDS--FVCSSLLNACANLSAYEQGKQVHVHIIKFGFMS---DTFAGNSLVNMY 444 (771)
Q Consensus 370 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~---~~~~~~~Li~~y 444 (771)
+..++-..|+.++|+.+|++....|+.... ..+..+-+++..+|++++|..+++...... +. +..+...+...+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHH
Confidence 344566778888888888888877765542 345556666777777777777777766542 11 222223333445
Q ss_pred HhcCCHHHHHHHHhhCCCCChhHHHHHHHHHH
Q 046775 445 AKCGSIDDADRAFSEIPDRGIVSWSAMIGGLA 476 (771)
Q Consensus 445 ~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~ 476 (771)
...|+.++|.+.+-...-++...|..-|..|+
T Consensus 86 ~~~gr~~eAl~~~l~~la~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAETLPRYRRAIRFYA 117 (120)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777666665444333334444444443
No 205
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.16 E-value=0.069 Score=44.45 Aligned_cols=79 Identities=14% Similarity=0.050 Sum_probs=63.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhcCCC-CCCHhhHHHHHHHhhccc--------chHHHHHHHHHHHHhCCCCchhHHH
Q 046775 368 TSMITAYAQFGLGEEALKLYLEMQDREI-NPDSFVCSSLLNACANLS--------AYEQGKQVHVHIIKFGFMSDTFAGN 438 (771)
Q Consensus 368 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~~--------~~~~a~~i~~~~~~~g~~~~~~~~~ 438 (771)
...|..+...+++.....+|+.+.+.|+ .|+..+|+.+|.+.++.. ++-....+++.|+..++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456666667999999999999999999 899999999999877643 3445667788888888999999998
Q ss_pred HHHHHHHh
Q 046775 439 SLVNMYAK 446 (771)
Q Consensus 439 ~Li~~y~k 446 (771)
.++....+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88876654
No 206
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.14 E-value=0.018 Score=44.81 Aligned_cols=65 Identities=14% Similarity=0.259 Sum_probs=51.6
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 046775 544 DILGRAGKFQEAMELVDTM-PFQANA-SVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLL 608 (771)
Q Consensus 544 ~~l~r~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l 608 (771)
.+|.+.+++++|.+.++.+ ...|+. ..|......+...|+.+.|...++++++..|+++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 4677888888888888887 355654 4777777788889999999999999999999887765443
No 207
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.14 E-value=0.22 Score=50.91 Aligned_cols=128 Identities=16% Similarity=0.218 Sum_probs=73.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHhhCCCCC----cchHHHHHH
Q 046775 470 AMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHA-GLVAEAKHHFESMEKKFGIQPM----QEHYACMID 544 (771)
Q Consensus 470 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~i~p~----~~~y~~lv~ 544 (771)
..+..|...|++..|-..+.++ ...|... |++++|+++|++..+.|.-... ...+.-+.+
T Consensus 99 ~A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 99 KAIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAAD 163 (282)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHH
Confidence 3445556666665555554443 3345555 7788888888777665533332 334566778
Q ss_pred HHhhcCCHHHHHHHHHhCC---CCCC---HhHHHHHHH---HHHhcCCHHHHHHHHHHHHhcCCC--CchhHHHHHHHH
Q 046775 545 ILGRAGKFQEAMELVDTMP---FQAN---ASVWGALLG---AARIYKNVEVGQHAAEMLFAIEPE--KSSTHVLLSNIY 612 (771)
Q Consensus 545 ~l~r~g~~~eA~~~~~~m~---~~p~---~~~~~~ll~---a~~~~~~~~~a~~~~~~~~~l~p~--~~~~~~~l~~~y 612 (771)
++.+.|++++|.+++++.. .+.+ ..+=..++. .+...||...|...+++..+.+|. ++.=+.++.++.
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~ 242 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLL 242 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHH
Confidence 8899999999999988752 1111 111122222 234468999999999999999884 333344454443
No 208
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=1.1 Score=46.22 Aligned_cols=210 Identities=14% Similarity=0.089 Sum_probs=104.8
Q ss_pred hcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh---------------hHHHHHHHH
Q 046775 410 ANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPDRGI---------------VSWSAMIGG 474 (771)
Q Consensus 410 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~---------------~~~~~li~~ 474 (771)
...++.+.+.++-..+.+.. ..+....-.-..++--.++.+.|...|++...-|+ ..|.-=..-
T Consensus 180 ~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~ 258 (486)
T KOG0550|consen 180 AFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGND 258 (486)
T ss_pred hhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhh
Confidence 44566666666666655543 11111111111223334666677777766653332 123333344
Q ss_pred HHHcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcC
Q 046775 475 LAQHGRGKEALQMFGQMLED---GVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAG 550 (771)
Q Consensus 475 ~~~~g~~~~A~~l~~~m~~~---g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g 550 (771)
..+.|++.+|.+.+.+.+.. .++|+.-.|.....+..+.|+.++|+.--+... .|.|. +..|-.-..++.-.+
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHHHH
Confidence 45667777777777776651 122333345555555666677777766555443 33333 222222223333445
Q ss_pred CHHHHHHHHHhC-CCCCC------------------HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-hh------
Q 046775 551 KFQEAMELVDTM-PFQAN------------------ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKS-ST------ 604 (771)
Q Consensus 551 ~~~eA~~~~~~m-~~~p~------------------~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~-~~------ 604 (771)
+|++|.+-+++. ..+-+ -.-|-.+|+.-+...+.+........++...|+-. +.
T Consensus 336 ~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~ 415 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEA 415 (486)
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHH
Confidence 566666665543 11111 11355555666666666666666666777777532 22
Q ss_pred -HHHHHHHHHhcCCchhHHH
Q 046775 605 -HVLLSNIYASAGMWDNVAK 623 (771)
Q Consensus 605 -~~~l~~~y~~~g~~~~a~~ 623 (771)
+...++.|.-.++..+..+
T Consensus 416 kFkevgeAy~il~d~~kr~r 435 (486)
T KOG0550|consen 416 KFKEVGEAYTILSDPMKRVR 435 (486)
T ss_pred HHHHHHHHHHHhcCHHHHhh
Confidence 2344455555555544443
No 209
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.09 E-value=0.042 Score=55.92 Aligned_cols=128 Identities=15% Similarity=0.086 Sum_probs=89.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHH---HHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhCC-----CC---CCHh
Q 046775 502 TLVSVLCACNHAGLVAEAKHHFES---MEKKFGIQPM-QEHYACMIDILGRAGKFQEAMELVDTMP-----FQ---ANAS 569 (771)
Q Consensus 502 t~~~ll~a~~~~g~~~~a~~~~~~---m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~-----~~---p~~~ 569 (771)
.|-.|...|.-.|++++|+...+. +.+.||-+.. ...++.+...+.-.|+++.|.+.++..- +. -.+.
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 456666666677889988877653 3345554443 4467788888888899999998887641 11 1233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc----C--CCCchhHHHHHHHHHhcCCchhHHHHHHHHH
Q 046775 570 VWGALLGAARIYKNVEVGQHAAEMLFAI----E--PEKSSTHVLLSNIYASAGMWDNVAKVRRFMK 629 (771)
Q Consensus 570 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l----~--p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 629 (771)
..-+|.+++...++++.|....++=+.+ + -....++..|+|.|...|..+.|......-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 5667888888888888888777665543 2 2356688999999999999999887765543
No 210
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.08 E-value=0.05 Score=46.23 Aligned_cols=90 Identities=17% Similarity=0.122 Sum_probs=74.5
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHHhcCC
Q 046775 544 DILGRAGKFQEAMELVDTM-PFQ-ANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKS----STHVLLSNIYASAGM 617 (771)
Q Consensus 544 ~~l~r~g~~~eA~~~~~~m-~~~-p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~----~~~~~l~~~y~~~g~ 617 (771)
-++..+|++++|++.|.+. .+- .++++|+.-..++|.+|+.+.|..-+++++++..+.. .+|+.-+-+|-..|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3577888999999888775 233 3677899999999999999999999999999865433 358899999999999
Q ss_pred chhHHHHHHHHHhCCC
Q 046775 618 WDNVAKVRRFMKDNKL 633 (771)
Q Consensus 618 ~~~a~~~~~~m~~~g~ 633 (771)
-++|..-++...+.|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999999988877763
No 211
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.07 E-value=0.32 Score=48.20 Aligned_cols=172 Identities=12% Similarity=0.062 Sum_probs=99.1
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCC--Ch-h---HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHH
Q 046775 439 SLVNMYAKCGSIDDADRAFSEIPDR--GI-V---SWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNH--ITLVSVLCAC 510 (771)
Q Consensus 439 ~Li~~y~k~g~~~~A~~~f~~~~~~--~~-~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~ 510 (771)
.....+.+.|++++|.+.|+.+... +. . ..-.++.+|-+.+++++|+..|++..+ ..|+. +-+...+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~--~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCcCCCchHHHHHHHHH
Confidence 3444456678888888888877632 21 1 122345667778888888888888877 34443 2344444443
Q ss_pred hc--cC---------------c---HHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhH
Q 046775 511 NH--AG---------------L---VAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMPFQANASV 570 (771)
Q Consensus 511 ~~--~g---------------~---~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~ 570 (771)
++ .+ + ..+|...|+.+.+.| |+. .-..+|...+..+...--..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~S-------------~ya~~A~~rl~~l~~~la~~- 177 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PNS-------------QYTTDATKRLVFLKDRLAKY- 177 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cCC-------------hhHHHHHHHHHHHHHHHHHH-
Confidence 32 10 1 233445555555443 332 22233333222221000000
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHhcCCchhHHHHHHHHH
Q 046775 571 WGALLGAARIYKNVEVGQHAAEMLFAIEPEK---SSTHVLLSNIYASAGMWDNVAKVRRFMK 629 (771)
Q Consensus 571 ~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 629 (771)
-.....-+.+.|+..-|..-++.+++--|+. +.+...+.+.|...|..++|.++.+...
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0012233566788888999999999987764 4567788899999999999999887664
No 212
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.01 E-value=0.55 Score=47.91 Aligned_cols=90 Identities=13% Similarity=0.189 Sum_probs=40.7
Q ss_pred HHHHHHHHhc-CCHHHHHHHHhhCC-----CCC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-----CHH-
Q 046775 438 NSLVNMYAKC-GSIDDADRAFSEIP-----DRG----IVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLP-----NHI- 501 (771)
Q Consensus 438 ~~Li~~y~k~-g~~~~A~~~f~~~~-----~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----d~~- 501 (771)
..+..+|.+. |++++|.+.|++.. ... ...+..+...+.+.|++++|+++|++....-... +.-
T Consensus 118 ~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~ 197 (282)
T PF14938_consen 118 KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKE 197 (282)
T ss_dssp HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHH
Confidence 3344445554 55555555555433 111 1234445555666666666666666665532211 111
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHH
Q 046775 502 TLVSVLCACNHAGLVAEAKHHFESME 527 (771)
Q Consensus 502 t~~~ll~a~~~~g~~~~a~~~~~~m~ 527 (771)
.|...+-.+...|+...|.+.|+...
T Consensus 198 ~~l~a~l~~L~~~D~v~A~~~~~~~~ 223 (282)
T PF14938_consen 198 YFLKAILCHLAMGDYVAARKALERYC 223 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHG
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22233334445566666666666554
No 213
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.93 E-value=0.84 Score=48.33 Aligned_cols=63 Identities=16% Similarity=0.091 Sum_probs=36.1
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCh----hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046775 431 MSDTFAGNSLVNMYAKCGSIDDADRAFSEIP--DRGI----VSWSAMIGGLAQHGRGKEALQMFGQMLE 493 (771)
Q Consensus 431 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~ 493 (771)
+.+...++.+...|.+.|++++|...|++.. .|+. .+|..+..+|++.|+.++|++.+++.++
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3345555666666666666666666665543 2331 2466666666666666666666666655
No 214
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.82 E-value=0.37 Score=46.44 Aligned_cols=185 Identities=15% Similarity=0.005 Sum_probs=128.2
Q ss_pred HHHHHHHHHHhCCCCChhhHHHHHHHHHcCCChHHHHHHHhcCCC--CCc--------chHHHHHHHHHhCCChhHHHHH
Q 046775 14 GLQVHGIVVFTGFDSDEFVANSLVVMYAKCGNFIDSRRLFDAIPE--RSV--------VSWNSLFSCYVHCDFLEEAVCF 83 (771)
Q Consensus 14 ~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~--~~~--------~~~n~li~~~~~~g~~~~A~~l 83 (771)
-+-+|+.+...-. .-+++|...|.-...+++-...|+.-.. ..+ ..-++++..+.-.+.+.-.+.+
T Consensus 124 mR~lhAe~~~~lg----npqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~ 199 (366)
T KOG2796|consen 124 MRILHAELQQYLG----NPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDA 199 (366)
T ss_pred HHHHHHHHHHhcC----CcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHH
Confidence 3456777655321 2267788887776667777766665433 222 2345677777778888889999
Q ss_pred HHHhHHCCCCCCcchHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCCChhhHH-----HHHHHHHhcCChhHHHHHHccCC
Q 046775 84 FKEMVLSGIRPNEFSLSSMINACAGSGDSLLGRKIHGYSIKLGYDSDMFSAN-----ALVDMYAKVGNLEDAVAVFKDIE 158 (771)
Q Consensus 84 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~-----~Li~~y~~~g~~~~A~~~f~~~~ 158 (771)
+.+.++...+.++.....+.+.-.+.||.+.+...++.+.+..-..|....+ .....|.-.+++..|.+.|++++
T Consensus 200 ~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~ 279 (366)
T KOG2796|consen 200 YHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEIL 279 (366)
T ss_pred HHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhcc
Confidence 9999887767777788888888889999999999999887764344433333 33445666788999999999988
Q ss_pred CC---CcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHH
Q 046775 159 HP---DIVSWNAVIAGCVLHEHNDWALKLFQQMKSSEINPNMFTYTSAL 204 (771)
Q Consensus 159 ~~---~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 204 (771)
.. |.+.-|.-.-+..-.|+..+|++..+.|++. .|...+-.+++
T Consensus 280 ~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 280 RMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred ccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 73 4455555444555568999999999999875 45544444433
No 215
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.67 E-value=3.1 Score=42.79 Aligned_cols=220 Identities=17% Similarity=0.131 Sum_probs=138.2
Q ss_pred HhcCCHHHHHHHHHhcCC---CceecHHHHHHHHHHcCChHHHHHHHHHHhcC-CCCCCHh--hHHHHHHHhhcc---cc
Q 046775 344 GKCGHVEDAVKIFKESSA---VDLVACTSMITAYAQFGLGEEALKLYLEMQDR-EINPDSF--VCSSLLNACANL---SA 414 (771)
Q Consensus 344 ~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~--t~~~ll~a~~~~---~~ 414 (771)
-+.|..+.|+..-+..-. .-...|.+.+...++.|+++.|+++.+.-... -+.++.. .-..+|.+-+.. .+
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 356777777666655433 23356788899999999999999999876553 2445543 223344332221 23
Q ss_pred hHHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 046775 415 YEQGKQVHVHIIKFGFMSDTFAG-NSLVNMYAKCGSIDDADRAFSEIPD--RGIVSWSAMIGGLAQHGRGKEALQMFGQM 491 (771)
Q Consensus 415 ~~~a~~i~~~~~~~g~~~~~~~~-~~Li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m 491 (771)
...++..-.+..|. .||..-. -.-...|.+.|++.++-.+++.+-+ |....| .+..+++.|+ .++.-+++.
T Consensus 245 p~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia--~lY~~ar~gd--ta~dRlkRa 318 (531)
T COG3898 245 PASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA--LLYVRARSGD--TALDRLKRA 318 (531)
T ss_pred hHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH--HHHHHhcCCC--cHHHHHHHH
Confidence 44555554444443 3433221 2224568899999999999998864 333333 2333445554 444444444
Q ss_pred HH-CCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhc-CCHHHHHHHHHhCCCCCCH
Q 046775 492 LE-DGVLPNHI-TLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRA-GKFQEAMELVDTMPFQANA 568 (771)
Q Consensus 492 ~~-~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~-g~~~eA~~~~~~m~~~p~~ 568 (771)
.. ..++||.. +...+..+-...|++..|..--+... ...|....|.-|.|.-.-. |+-.++..++-+..-.|..
T Consensus 319 ~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrd 395 (531)
T COG3898 319 KKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRD 395 (531)
T ss_pred HHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCC
Confidence 32 22778764 77778888888999988887766655 5689999999999987655 8988998888776434433
Q ss_pred hHHH
Q 046775 569 SVWG 572 (771)
Q Consensus 569 ~~~~ 572 (771)
..|.
T Consensus 396 PaW~ 399 (531)
T COG3898 396 PAWT 399 (531)
T ss_pred Cccc
Confidence 3443
No 216
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.095 Score=53.88 Aligned_cols=82 Identities=10% Similarity=0.056 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCCccceEEEcCEEE
Q 046775 570 VWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDNKLKKEPGMSWIEVKDKVY 649 (771)
Q Consensus 570 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~ 649 (771)
+...|...+.+.++...|....+++++++|+|.-++..-+.+|...|.+++|...++++.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~------------------ 320 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL------------------ 320 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh------------------
Confidence 44455555667888999999999999999999999999999999999999999999988654
Q ss_pred EEEeCCCCccchHHHHHHHHHHHHHHHh
Q 046775 650 TFTVGDRSHARSKEIYAKLDEVSDLLNK 677 (771)
Q Consensus 650 ~f~~~~~~h~~~~~i~~~l~~l~~~~~~ 677 (771)
.|..++|...|..|..++++
T Consensus 321 --------~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 321 --------EPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred --------CCCcHHHHHHHHHHHHHHHH
Confidence 35567788888888877765
No 217
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.34 E-value=2.9 Score=40.34 Aligned_cols=194 Identities=16% Similarity=0.122 Sum_probs=123.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046775 434 TFAGNSLVNMYAKCGSIDDADRAFSEIP-----DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLC 508 (771)
Q Consensus 434 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 508 (771)
..........+...+.+..+...+.... ......+..+...+...++...+++.+.........+.. .......
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDL-AEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch-HHHHHHH
Confidence 4555666666777777777777666543 223445566666666777777777777777764333311 1222222
Q ss_pred -HHhccCcHHHHHHHHHHHHHhhCCCC----CcchHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC--HhHHHHHHHHHHh
Q 046775 509 -ACNHAGLVAEAKHHFESMEKKFGIQP----MQEHYACMIDILGRAGKFQEAMELVDTMP-FQAN--ASVWGALLGAARI 580 (771)
Q Consensus 509 -a~~~~g~~~~a~~~~~~m~~~~~i~p----~~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p~--~~~~~~ll~a~~~ 580 (771)
++...|..+++...|..... ..| ....+......+...|+.++|...+.+.. ..|+ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 66777888888888777632 233 22333333444566778888887777663 3333 4567777777777
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 046775 581 YKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 581 ~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
.++.+.+......+++..|.....+..++..+...|+++++..........
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 788888888888888888876666777777777667777777766655443
No 218
>PRK11906 transcriptional regulator; Provisional
Probab=95.20 E-value=0.89 Score=48.23 Aligned_cols=156 Identities=13% Similarity=0.164 Sum_probs=100.4
Q ss_pred hHH--HHHHHHHHHcC-----ChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhc----------cCcHHHHHHHHHHHH
Q 046775 466 VSW--SAMIGGLAQHG-----RGKEALQMFGQMLE-DGVLPNHITLVSVLCACNH----------AGLVAEAKHHFESME 527 (771)
Q Consensus 466 ~~~--~~li~~~~~~g-----~~~~A~~l~~~m~~-~g~~pd~~t~~~ll~a~~~----------~g~~~~a~~~~~~m~ 527 (771)
..| ..++.|....- ..+.|+.+|.+... +.+.|+...-...+.-|.. .....+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 55555554421 34678888999882 2367776533333332211 223455666655555
Q ss_pred HhhCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh
Q 046775 528 KKFGIQPM-QEHYACMIDILGRAGKFQEAMELVDTM-PFQANAS-VWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSST 604 (771)
Q Consensus 528 ~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 604 (771)
.+.|+ ......+..+++-.|+++.|..+|++. ...||.. +|......+.-.|+.+.|....++.++++|....+
T Consensus 332 ---eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 ---DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred ---hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 33443 555566667777788899999999887 4778755 77777777888899999999999999999977666
Q ss_pred HHHHHH--HHHhcCCchhHHHHH
Q 046775 605 HVLLSN--IYASAGMWDNVAKVR 625 (771)
Q Consensus 605 ~~~l~~--~y~~~g~~~~a~~~~ 625 (771)
-++--+ +|...+ .++|.+++
T Consensus 409 ~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 409 VVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred HHHHHHHHHHcCCc-hhhhHHHH
Confidence 554444 466544 55665554
No 219
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.10 E-value=4.3 Score=47.83 Aligned_cols=157 Identities=22% Similarity=0.270 Sum_probs=95.3
Q ss_pred CCHHHHHHHHHhcCCCceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHH
Q 046775 347 GHVEDAVKIFKESSAVDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHII 426 (771)
Q Consensus 347 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 426 (771)
+++++|..-+.++. ...|+-.+.---++|.+.+|+.++ +|+...+.-+..+|+. ++.
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~------------hL~ 950 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYAD------------HLR 950 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHH------------HHH
Confidence 45566655555544 233444444445566666666653 5777777666666543 122
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH--HH
Q 046775 427 KFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPDRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHIT--LV 504 (771)
Q Consensus 427 ~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t--~~ 504 (771)
+.. .++--.-||.+||++++|.+ +|...|++++|+.+..+|.. .-|... -.
T Consensus 951 ~~~------~~~~Aal~Ye~~GklekAl~------------------a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~ 1003 (1265)
T KOG1920|consen 951 EEL------MSDEAALMYERCGKLEKALK------------------AYKECGDWREALSLAAQLSE---GKDELVILAE 1003 (1265)
T ss_pred Hhc------cccHHHHHHHHhccHHHHHH------------------HHHHhccHHHHHHHHHhhcC---CHHHHHHHHH
Confidence 211 12223457889999999865 45567788888888777643 122222 23
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC
Q 046775 505 SVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTM 562 (771)
Q Consensus 505 ~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m 562 (771)
.|.+-|...++.-+|-++......+ +.--+..|+++-.+++|..+....
T Consensus 1004 ~L~s~L~e~~kh~eAa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHcccchhHHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 4566677777777777776554432 344577888888888888877654
No 220
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.06 E-value=0.06 Score=46.89 Aligned_cols=93 Identities=12% Similarity=0.199 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 046775 435 FAGNSLVNMYAKCGSIDDADRAFSEIPDRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAG 514 (771)
Q Consensus 435 ~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g 514 (771)
.++.+++-++++.|+++....+.+..=.-|+ .+-...+. --......|+..++.+++.+++..|
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~-------~~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n~ 66 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDV-------NGKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYNG 66 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCC-------CCccccCc---------cCCCCCCCCCHHHHHHHHHHHHhcc
Confidence 4455666666666666666666554321111 11111111 1112346688888888888888888
Q ss_pred cHHHHHHHHHHHHHhhCCCCCcchHHHHH
Q 046775 515 LVAEAKHHFESMEKKFGIQPMQEHYACMI 543 (771)
Q Consensus 515 ~~~~a~~~~~~m~~~~~i~p~~~~y~~lv 543 (771)
++..|.++.+...+.|+++-....|..|.
T Consensus 67 ~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 67 DIFSALKLVDFFSRKYPIPIPKEFWRRLL 95 (126)
T ss_pred cHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 88888888888888877655544444443
No 221
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.04 E-value=0.16 Score=44.34 Aligned_cols=84 Identities=20% Similarity=0.330 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHH--------------HhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC--
Q 046775 499 NHITLVSVLCACNHAGLVAEAKHHFESME--------------KKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTM-- 562 (771)
Q Consensus 499 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~--------------~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-- 562 (771)
|..++..++.|+++.|+++....+.++.= ....+.|+.....+++.+|+..|++..|+++++..
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 34566666666666666666666654321 12234566677777888888888888888777654
Q ss_pred --CCCCCHhHHHHHHHHHHhcC
Q 046775 563 --PFQANASVWGALLGAARIYK 582 (771)
Q Consensus 563 --~~~p~~~~~~~ll~a~~~~~ 582 (771)
+++-+..+|..|+.=|...-
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHhc
Confidence 44445667877777555443
No 222
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.87 E-value=0.21 Score=54.00 Aligned_cols=132 Identities=16% Similarity=0.212 Sum_probs=86.2
Q ss_pred HHHcCChHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHH
Q 046775 475 LAQHGRGKEALQMFG-QMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQ 553 (771)
Q Consensus 475 ~~~~g~~~~A~~l~~-~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~ 553 (771)
....|+++++.+..+ .-.-..++ ..-...++.-+.+.|..+.|+++-..-..+ .++....|+++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r-------------FeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDHR-------------FELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH-------------HHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHHH-------------hHHHHhcCCHH
Confidence 345667777666554 11111122 223556666677788888888774433322 36777899999
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 046775 554 EAMELVDTMPFQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDNK 632 (771)
Q Consensus 554 eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 632 (771)
.|.+..++.+ +...|..|...+-.+||++.|+.++++. ..+..|+-+|...|+-+.-.++-+....+|
T Consensus 336 ~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 336 IALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 9999888754 7779999999999999999999999965 345678889999999888777777766665
No 223
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.79 E-value=1.6 Score=41.94 Aligned_cols=141 Identities=17% Similarity=0.217 Sum_probs=78.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHH
Q 046775 469 SAMIGGLAQHGRGKEALQMFGQMLEDGVLPN----HITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMID 544 (771)
Q Consensus 469 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~ 544 (771)
-.....+.+.|++.+|++.|+++... -|+ ......+..++...|++++|...|+...+.|.-.|... +.-...
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-~A~Y~~ 85 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDR--YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-YALYML 85 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-HHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-hHHHHH
Confidence 34455667888899999999988874 233 13456677788888888888888888887765554422 111111
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh-----------------HHH
Q 046775 545 ILGRAGKFQEAMELVDTMPFQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSST-----------------HVL 607 (771)
Q Consensus 545 ~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~-----------------~~~ 607 (771)
+++.-.... ..+ +.. +..+....|...++.+++.-|+++-+ -..
T Consensus 86 g~~~~~~~~---~~~---~~~-------------~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ 146 (203)
T PF13525_consen 86 GLSYYKQIP---GIL---RSD-------------RDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELY 146 (203)
T ss_dssp HHHHHHHHH---HHH----TT----------------HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCc---cch---hcc-------------cChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 111000000 000 111 22233455666666666666654433 235
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhC
Q 046775 608 LSNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 608 l~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
.+..|.+.|+|..|..-++.+.+.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH
Confidence 678899999999998887776543
No 224
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.72 E-value=8.6 Score=42.59 Aligned_cols=37 Identities=16% Similarity=0.088 Sum_probs=20.4
Q ss_pred HHHHHcCChHHHHHHHHHHhc----CCCCCCHhhHHHHHHH
Q 046775 372 TAYAQFGLGEEALKLYLEMQD----REINPDSFVCSSLLNA 408 (771)
Q Consensus 372 ~~~~~~g~~~~A~~l~~~m~~----~g~~p~~~t~~~ll~a 408 (771)
.-+-+.|++-+|-+++.+|.+ .+.+|-..--..+|.|
T Consensus 931 e~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~A 971 (1189)
T KOG2041|consen 931 EKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGA 971 (1189)
T ss_pred HHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHH
Confidence 345566777777777777754 3444444333334443
No 225
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.66 E-value=2.3 Score=36.69 Aligned_cols=140 Identities=16% Similarity=0.129 Sum_probs=84.2
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHH
Q 046775 476 AQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEA 555 (771)
Q Consensus 476 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA 555 (771)
...|..++..++..+...+. |..-++.++.--..+-+-+-..+.++++-+-|.+.|-.. .-.+|..+.+.|...|-
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~N-lKrVi~C~~~~n~~se~ 88 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGN-LKRVIECYAKRNKLSEY 88 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT---HH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcc-hHHHHHHHHHhcchHHH
Confidence 34577778888888776632 333344444433333444555666777766665555322 23456666666655442
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 046775 556 MELVDTMPFQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDNKLK 634 (771)
Q Consensus 556 ~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~ 634 (771)
..--|++...+|.-+.-.++++.++.-+..+|...+-++++|.+.|+..++.++++..-++|++
T Consensus 89 ---------------vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 89 ---------------VDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp ---------------HHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred ---------------HHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 2234566678888888888888888766668899999999999999999999999999999985
No 226
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.54 E-value=7.4 Score=41.04 Aligned_cols=352 Identities=13% Similarity=0.046 Sum_probs=178.6
Q ss_pred HHHHHhhcCCcHHHHHHHHHHHHHccC----CCChhHHHHHHHhhhcCCChHHHHHHhhhCCCCCeehHHHHHHHHHhCC
Q 046775 202 SALKACAGMELKELGRQLHCSLIKMEI----KSDPIVGVGLVDMYAKCGSMDEARMIFHLMPEKNLIAWNIVISGHLQNG 277 (771)
Q Consensus 202 ~ll~a~~~~~~~~~a~~l~~~~~~~g~----~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g 277 (771)
..+.++...|.+.+|+.++..++..=+ .-+..+|+.++-++++.=-++. -+.+...=..-|--||..|.+.=
T Consensus 133 i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl----~e~~s~dl~pdyYemilfY~kki 208 (549)
T PF07079_consen 133 IEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLEL----KESMSSDLYPDYYEMILFYLKKI 208 (549)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHH----HHhcccccChHHHHHHHHHHHHH
Confidence 334455667777777777766665433 3677777777777765322211 11111111233555555554321
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcc--CChhHHHHHHHHHHHhcCCCch-HHHhHHHHHHHhcCCHHHHHH
Q 046775 278 GDMEAASLFPWMYREGVGFDQTTLSTVLKSVASF--QAIGVCKQVHALSVKTAFESDD-YIVNSLIDAYGKCGHVEDAVK 354 (771)
Q Consensus 278 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~--~~~~~a~~i~~~~~~~g~~~~~-~~~~~Li~~y~k~g~~~~A~~ 354 (771)
..-++ -.=..+-|....+..++....-. ..+.--.+++..-.+.-+.|+- -+...|+.-+.+ +.+++..
T Consensus 209 ~~~d~------~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~ 280 (549)
T PF07079_consen 209 HAFDQ------RPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGH 280 (549)
T ss_pred HHHhh------chHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHH
Confidence 11111 00012234444444444433322 1233334444444444444443 334445555544 3344433
Q ss_pred HHHh--------cCCCceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHh----------hHHHHHHH-hhcccch
Q 046775 355 IFKE--------SSAVDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSF----------VCSSLLNA-CANLSAY 415 (771)
Q Consensus 355 ~f~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----------t~~~ll~a-~~~~~~~ 415 (771)
+-+. +.+.=+.++..++...++.++..+|-+.+.-+.- +.|+.. ++..++.. =....++
T Consensus 281 ~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tkl 358 (549)
T PF07079_consen 281 FCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTKL 358 (549)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHHH
Confidence 3322 2233456778888888899999998888776654 234332 22222210 0001111
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHH---HHHHhcCC-HHHHHHHHhhCC---CCChhHHHHHH----HHHHHc---CCh
Q 046775 416 EQGKQVHVHIIKFGFMSDTFAGNSLV---NMYAKCGS-IDDADRAFSEIP---DRGIVSWSAMI----GGLAQH---GRG 481 (771)
Q Consensus 416 ~~a~~i~~~~~~~g~~~~~~~~~~Li---~~y~k~g~-~~~A~~~f~~~~---~~~~~~~~~li----~~~~~~---g~~ 481 (771)
..-..++..+...++..- ....-|+ .-|-+.|. -++|.++++.+. .-|..+-|... ..|.+. ...
T Consensus 359 r~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~ 437 (549)
T PF07079_consen 359 RDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAI 437 (549)
T ss_pred HHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 222223333333332211 1111222 22334444 677888877665 44544433322 223221 123
Q ss_pred HHHHHHHHHHHHCCCCCCHHH----HHHHHHH--HhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHH
Q 046775 482 KEALQMFGQMLEDGVLPNHIT----LVSVLCA--CNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEA 555 (771)
Q Consensus 482 ~~A~~l~~~m~~~g~~pd~~t----~~~ll~a--~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA 555 (771)
.+-+.+-+-..+.|+.|-.+. -+.+..| +...|++.++.-+=..+. .|.|++.+|.-+.-.+....+++||
T Consensus 438 ~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA 514 (549)
T PF07079_consen 438 PRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEA 514 (549)
T ss_pred HHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHH
Confidence 333444444556788774432 2333333 445688888877766655 5789999999998888899999999
Q ss_pred HHHHHhCCCCCCHhHHHH
Q 046775 556 MELVDTMPFQANASVWGA 573 (771)
Q Consensus 556 ~~~~~~m~~~p~~~~~~~ 573 (771)
.+++.+.| |+..+|++
T Consensus 515 ~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 515 WEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHHHhCC--CchhhHHH
Confidence 99999987 56666655
No 227
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.41 E-value=0.042 Score=43.47 Aligned_cols=58 Identities=14% Similarity=0.114 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc----CC---CCchhHHHHHHHHHhcCCchhHHHHHHHH
Q 046775 571 WGALLGAARIYKNVEVGQHAAEMLFAI----EP---EKSSTHVLLSNIYASAGMWDNVAKVRRFM 628 (771)
Q Consensus 571 ~~~ll~a~~~~~~~~~a~~~~~~~~~l----~p---~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 628 (771)
++.+...++..|+.+.|...+++++++ .| +-..++..++++|...|++++|.++.+..
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444444444444444444432 11 12345667777788888888777776644
No 228
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.40 E-value=11 Score=42.38 Aligned_cols=318 Identities=14% Similarity=0.043 Sum_probs=178.2
Q ss_pred HCCCCCCHhhHHH-----HHHHHhccCChhHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcCC---HHHHHHHHHhcCC-
Q 046775 291 REGVGFDQTTLST-----VLKSVASFQAIGVCKQVHALSVKTAFESDDYIVNSLIDAYGKCGH---VEDAVKIFKESSA- 361 (771)
Q Consensus 291 ~~g~~pd~~t~~~-----ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~---~~~A~~~f~~~~~- 361 (771)
.-|++.+..-|.. ++.-+...+.+..|.++-..+--.-... ..++.....-+.+..+ -+.+.++=+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 3466655554443 4455556666677777665554322222 4566666666665532 2333344444444
Q ss_pred -CceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCC----CCHhhHHHHHHHhhcccchHHHHHHHHHHHHh--------
Q 046775 362 -VDLVACTSMITAYAQFGLGEEALKLYLEMQDREIN----PDSFVCSSLLNACANLSAYEQGKQVHVHIIKF-------- 428 (771)
Q Consensus 362 -~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~----p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-------- 428 (771)
...++|..+...--+.|+++-|..+++.=...+.+ .+-.-+...|.-+...|+.+...+++-.+.+.
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~ 583 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFM 583 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777788888887776543222211 12223445566666777777666665544332
Q ss_pred ---CCCCchhHHHHHHH---------HHHhcCCHHHHHHHHhhCC-------CCChhHHHHHHHHHHHcCC---hHHH--
Q 046775 429 ---GFMSDTFAGNSLVN---------MYAKCGSIDDADRAFSEIP-------DRGIVSWSAMIGGLAQHGR---GKEA-- 484 (771)
Q Consensus 429 ---g~~~~~~~~~~Li~---------~y~k~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~---~~~A-- 484 (771)
..+....+|.-++. .|-. ++..++...|..-. ..-..........+++... ..+|
T Consensus 584 ~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q-~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~e 662 (829)
T KOG2280|consen 584 TLRNQPLALSLYRQFMRHQDRATLYDFYNQ-DDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALE 662 (829)
T ss_pred HHHhchhhhHHHHHHHHhhchhhhhhhhhc-ccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHH
Confidence 11122222222211 1111 11112222211100 0111122233344444333 1222
Q ss_pred -----HHHHHHHHH-CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHH
Q 046775 485 -----LQMFGQMLE-DGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMEL 558 (771)
Q Consensus 485 -----~~l~~~m~~-~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~ 558 (771)
+.+++.+.. .|..-...|..-.+.-|.+.|...+|.++-...+ -|+...|---+.+|...++++|-+++
T Consensus 663 d~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekf 737 (829)
T KOG2280|consen 663 DQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKF 737 (829)
T ss_pred HHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHH
Confidence 233333332 2333444566667778888999999988755442 57777888888999999999999999
Q ss_pred HHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHH
Q 046775 559 VDTMPFQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRR 626 (771)
Q Consensus 559 ~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 626 (771)
-+++.- +.-|.-+..+|...||.++|....-++-.+ .-...+|...|+..+|.+.--
T Consensus 738 Akskks---PIGy~PFVe~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 738 AKSKKS---PIGYLPFVEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HhccCC---CCCchhHHHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHH
Confidence 888741 344555778999999999998887665222 246678999999999987644
No 229
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.37 E-value=1.3 Score=39.65 Aligned_cols=66 Identities=23% Similarity=0.322 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhc-CCHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 046775 501 ITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRA-GKFQEAMELVDTMPFQANASVWGALLGAAR 579 (771)
Q Consensus 501 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~-g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~ 579 (771)
.....++..|...+.++++..++..+.. |...++.+... ++.+.|.+++.+- .+...|..++..|.
T Consensus 70 yd~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~l 136 (140)
T smart00299 70 YDIEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKALL 136 (140)
T ss_pred CCHHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 3344466666666666666666655421 22233444333 6677777777652 24456766666554
No 230
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.32 E-value=12 Score=42.37 Aligned_cols=74 Identities=18% Similarity=0.160 Sum_probs=42.8
Q ss_pred HHHHHHHhhhcCCChHHHHHHhhhCCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc
Q 046775 234 VGVGLVDMYAKCGSMDEARMIFHLMPEKNLIAWNIVISGHLQNGGDMEAASLFPWMYREGVGFDQTTLSTVLKSVAS 310 (771)
Q Consensus 234 ~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~ 310 (771)
++..+|+.+.-.|+.++|-...-.|...+..-|--.+.-+...++......++ .....+.+...|-.+|..+..
T Consensus 394 v~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 394 VGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccC---CCCCcccCchHHHHHHHHHHH
Confidence 34445666666777777777777777777777776666666666654433321 111122344555566655544
No 231
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.29 E-value=0.14 Score=40.45 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=10.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHH
Q 046775 539 YACMIDILGRAGKFQEAMELVD 560 (771)
Q Consensus 539 y~~lv~~l~r~g~~~eA~~~~~ 560 (771)
+..+..++.+.|++++|+++++
T Consensus 49 ~~~lg~~~~~~g~~~~A~~~~~ 70 (78)
T PF13424_consen 49 LNNLGECYYRLGDYEEALEYYQ 70 (78)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHH
Confidence 4444444444455554444444
No 232
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.26 E-value=11 Score=44.53 Aligned_cols=162 Identities=18% Similarity=0.208 Sum_probs=88.3
Q ss_pred CChHHHHHHhhhCCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCChhHHHHHHHHHH
Q 046775 246 GSMDEARMIFHLMPEKNLIAWNIVISGHLQNGGDMEAASLFPWMYREGVGFDQTTLSTVLKSVASFQAIGVCKQVHALSV 325 (771)
Q Consensus 246 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 325 (771)
++++.|..-+..+. ...|+-.+.---++|.+.+|+.++ +||..++..+..+|+.. +.
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~h------------L~ 950 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADH------------LR 950 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHH------------HH
Confidence 34455554444443 223344444444555666666554 57777776666655431 11
Q ss_pred HhcCCCchHHHhHHHHHHHhcCCHHHHHHHHHhcCCCceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhh--HH
Q 046775 326 KTAFESDDYIVNSLIDAYGKCGHVEDAVKIFKESSAVDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFV--CS 403 (771)
Q Consensus 326 ~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~ 403 (771)
+.. .++--.-+|.++|+.++|.+. |..+|++++|+.+-.+|... -|... -.
T Consensus 951 ~~~------~~~~Aal~Ye~~GklekAl~a------------------~~~~~dWr~~l~~a~ql~~~---~de~~~~a~ 1003 (1265)
T KOG1920|consen 951 EEL------MSDEAALMYERCGKLEKALKA------------------YKECGDWREALSLAAQLSEG---KDELVILAE 1003 (1265)
T ss_pred Hhc------cccHHHHHHHHhccHHHHHHH------------------HHHhccHHHHHHHHHhhcCC---HHHHHHHHH
Confidence 111 122234478888888888664 56678899999988877531 22222 13
Q ss_pred HHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh
Q 046775 404 SLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPDRGI 465 (771)
Q Consensus 404 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~ 465 (771)
.+.+-+...+..-+|-++...... | ..--+..|++...+++|.++-......|.
T Consensus 1004 ~L~s~L~e~~kh~eAa~il~e~~s-----d---~~~av~ll~ka~~~~eAlrva~~~~~~d~ 1057 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEYLS-----D---PEEAVALLCKAKEWEEALRVASKAKRDDI 1057 (1265)
T ss_pred HHHHHHHHcccchhHHHHHHHHhc-----C---HHHHHHHHhhHhHHHHHHHHHHhcccchH
Confidence 455555555655555554443321 1 12334556677777777777666554443
No 233
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.19 E-value=7.3 Score=39.58 Aligned_cols=98 Identities=9% Similarity=0.061 Sum_probs=48.9
Q ss_pred hHHHHHHHhhcccchH---HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCC--hhHHHHHHHH
Q 046775 401 VCSSLLNACANLSAYE---QGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIP-DRG--IVSWSAMIGG 474 (771)
Q Consensus 401 t~~~ll~a~~~~~~~~---~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~-~~~--~~~~~~li~~ 474 (771)
++..+..++...+..+ ++..+.+.+.+ .++..+.++---+....+.++.+++.+++.+|. ..+ ...|...+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~-e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLES-EYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHH-hCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 4444555555544433 33344444422 223334444444555555677777777776665 222 2345554444
Q ss_pred H---HHcCChHHHHHHHHHHHHCCCCCCH
Q 046775 475 L---AQHGRGKEALQMFGQMLEDGVLPNH 500 (771)
Q Consensus 475 ~---~~~g~~~~A~~l~~~m~~~g~~pd~ 500 (771)
+ ..+ ....|...+..++...+.|..
T Consensus 165 i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 165 IKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 4 333 345666666666665555554
No 234
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.15 E-value=0.41 Score=43.26 Aligned_cols=69 Identities=23% Similarity=0.290 Sum_probs=33.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH----HhhCCCCCcch
Q 046775 469 SAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESME----KKFGIQPMQEH 538 (771)
Q Consensus 469 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~~i~p~~~~ 538 (771)
..++..+...|++++|+.+.+++.... +-|...+..++.++...|+..+|.+.|+.+. ++.|+.|+..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344455555566666666666665521 2234455566666666666666666555442 34566666543
No 235
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.13 E-value=3.3 Score=39.78 Aligned_cols=166 Identities=11% Similarity=0.101 Sum_probs=99.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC--CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHH
Q 046775 439 SLVNMYAKCGSIDDADRAFSEIPD--RG----IVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHI--TLVSVLCAC 510 (771)
Q Consensus 439 ~Li~~y~k~g~~~~A~~~f~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~ 510 (771)
.....+...|++++|...|+.+.. |+ ..+.-.++.++-+.|++++|+..|++.++ .-|++. -+...+.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~--~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK--LYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--H-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCcchhhHHHHHHH
Confidence 345556788999999999998872 22 24566778899999999999999999988 356542 333333333
Q ss_pred hccCcH-------------HHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 046775 511 NHAGLV-------------AEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMPFQANASVWGALLGA 577 (771)
Q Consensus 511 ~~~g~~-------------~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a 577 (771)
++.... .+|...|+.+.+.| -.+...++|...+..+...--. -=-....-
T Consensus 88 ~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y----------------P~S~y~~~A~~~l~~l~~~la~-~e~~ia~~ 150 (203)
T PF13525_consen 88 SYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY----------------PNSEYAEEAKKRLAELRNRLAE-HELYIARF 150 (203)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-----------------TTSTTHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHhCccchhcccChHHHHHHHHHHHHHHHHC----------------cCchHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 332221 23444555554443 3333344444443332100000 00112344
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCch---hHHHHHHHHHhcCCchhHHH
Q 046775 578 ARIYKNVEVGQHAAEMLFAIEPEKSS---THVLLSNIYASAGMWDNVAK 623 (771)
Q Consensus 578 ~~~~~~~~~a~~~~~~~~~l~p~~~~---~~~~l~~~y~~~g~~~~a~~ 623 (771)
+...|+...|..-++.+++--|+.+. +...|...|.+.|.-+.+..
T Consensus 151 Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 66788999999999999999997654 45678889999998884433
No 236
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.03 E-value=14 Score=42.16 Aligned_cols=115 Identities=12% Similarity=0.037 Sum_probs=60.7
Q ss_pred HHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHH----HHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhcCCC
Q 046775 36 LVVMYAKCGNFIDSRRLFDAIPERSVVSWNSLFSC----YVHCDFLEEAVCFFKEMVLSGIRPNEFSLSSMINACAGSGD 111 (771)
Q Consensus 36 ll~~y~~~g~~~~A~~~f~~~~~~~~~~~n~li~~----~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 111 (771)
-|++..+..-++.|..+-..-.. |...-..+... +-+.|++++|...|-+-... +.| ..+++-+.....
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~ 412 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQR 412 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHH
Confidence 34455555555556555443222 12222222222 34567777777776654421 222 234455544445
Q ss_pred cHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHccCC
Q 046775 112 SLLGRKIHGYSIKLGYDSDMFSANALVDMYAKVGNLEDAVAVFKDIE 158 (771)
Q Consensus 112 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~ 158 (771)
...-...++.+.+.|+. +..--+.|++.|.|.++.++-.+..+...
T Consensus 413 IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 55555666666677743 33344667777777777777666555444
No 237
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.01 E-value=0.39 Score=49.18 Aligned_cols=127 Identities=17% Similarity=0.051 Sum_probs=90.6
Q ss_pred hHHHHHHHhhcccchHHHHHHHHHHH----HhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhhCC-------CCC--hh
Q 046775 401 VCSSLLNACANLSAYEQGKQVHVHII----KFGFM-SDTFAGNSLVNMYAKCGSIDDADRAFSEIP-------DRG--IV 466 (771)
Q Consensus 401 t~~~ll~a~~~~~~~~~a~~i~~~~~----~~g~~-~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~-------~~~--~~ 466 (771)
.|..+-..|.-+|+++.+...|+.-. +.|-. .....+..|.+.|.-.|+++.|.+.|+... .+. ..
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45555555666788999998887543 23321 234567778899999999999999988643 333 34
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 046775 467 SWSAMIGGLAQHGRGKEALQMFGQMLE----DG-VLPNHITLVSVLCACNHAGLVAEAKHHFESME 527 (771)
Q Consensus 467 ~~~~li~~~~~~g~~~~A~~l~~~m~~----~g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 527 (771)
+.-+|...|.-...+++|+.++.+-+. .+ ..-....+.+|..++...|..++|+.+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 666788888888899999999887543 11 11233578889999999999999988766543
No 238
>PRK11906 transcriptional regulator; Provisional
Probab=93.93 E-value=0.76 Score=48.73 Aligned_cols=117 Identities=13% Similarity=0.052 Sum_probs=86.3
Q ss_pred cHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHh---------hcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcC
Q 046775 515 LVAEAKHHFESMEKKFGIQPM-QEHYACMIDILG---------RAGKFQEAMELVDTM-PFQA-NASVWGALLGAARIYK 582 (771)
Q Consensus 515 ~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~---------r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~ 582 (771)
..+.|..+|.+......++|+ ...|.++...+. ......+|.++.++. ...| |+.....+.-+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 356788889988855567887 455655544332 123345677777665 3555 4445555555667777
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 046775 583 NVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 583 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
+.+.|...++++.+++|+.+.+|...+++..-+|+.++|.+..+...+.
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999999999988764443
No 239
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.93 E-value=0.32 Score=47.31 Aligned_cols=114 Identities=12% Similarity=0.088 Sum_probs=87.6
Q ss_pred ChHHHHHHHhcCC--CCCcchHHHHHHHHHhC-----CChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhcCC-------
Q 046775 45 NFIDSRRLFDAIP--ERSVVSWNSLFSCYVHC-----DFLEEAVCFFKEMVLSGIRPNEFSLSSMINACAGSG------- 110 (771)
Q Consensus 45 ~~~~A~~~f~~~~--~~~~~~~n~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~------- 110 (771)
.+...++.|...+ ++|-.+|-+++..+... +..+-....++.|.+.||.-|..+|..||+.+-+..
T Consensus 49 ~Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvf 128 (406)
T KOG3941|consen 49 SLVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVF 128 (406)
T ss_pred cccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHH
Confidence 4556677888887 68888999999888654 556666778899999999999999999999875533
Q ss_pred ---------CcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCC-hhHHHHHHccCC
Q 046775 111 ---------DSLLGRKIHGYSIKLGYDSDMFSANALVDMYAKVGN-LEDAVAVFKDIE 158 (771)
Q Consensus 111 ---------~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~-~~~A~~~f~~~~ 158 (771)
.-.-+..++++|.-.|+.||-.+-..|++++.+.|- ..+..++.-.|+
T Consensus 129 Q~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 129 QKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 224578889999999999999999999999887664 334444444454
No 240
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.69 E-value=2 Score=45.84 Aligned_cols=99 Identities=15% Similarity=0.132 Sum_probs=50.9
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHh--HHHHHHHHHHhc
Q 046775 506 VLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMP--FQANAS--VWGALLGAARIY 581 (771)
Q Consensus 506 ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~--~~p~~~--~~~~ll~a~~~~ 581 (771)
+..++-+.|+.+||++.|+.|.+++...-.......++..|...+.+.|+..++.+.. ..|... .|++.|-..|.-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav 344 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAV 344 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhh
Confidence 3334445555555555555555443211122234455566666666666666666553 123332 344433333333
Q ss_pred CC---------------HHHHHHHHHHHHhcCCCCchh
Q 046775 582 KN---------------VEVGQHAAEMLFAIEPEKSST 604 (771)
Q Consensus 582 ~~---------------~~~a~~~~~~~~~l~p~~~~~ 604 (771)
++ ...|.++..++++.+|.-+..
T Consensus 345 ~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 345 GDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred ccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 32 123567889999999976654
No 241
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.58 E-value=14 Score=40.62 Aligned_cols=183 Identities=14% Similarity=0.059 Sum_probs=127.0
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046775 432 SDTFAGNSLVNMYAKCGSIDDADRAFSEIPDRG---IVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLC 508 (771)
Q Consensus 432 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 508 (771)
++...|..-++.-.+.|+.+...-.|++..-|= ...|-..+.-.-..|+.+-|-.+.....+--++-...+-..-..
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 355677788888888899999888888876432 23455555555555888877777766665333333333332333
Q ss_pred HHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHH---HHHHhC-CCCCCHhHHHHHHH-----HH
Q 046775 509 ACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAM---ELVDTM-PFQANASVWGALLG-----AA 578 (771)
Q Consensus 509 a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~---~~~~~m-~~~p~~~~~~~ll~-----a~ 578 (771)
-+-+.|+.+.|..+++...+++ |+ ++.-.--+.+..|.|.++.+. +++... +.+-+..+...+.- -.
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 4667899999999999998874 66 333444567788999999888 666554 33434444333332 23
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 046775 579 RIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGM 617 (771)
Q Consensus 579 ~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 617 (771)
.+.++.+.|..++.++.+..|++...|..+.++....+.
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 567899999999999999999999999999998777663
No 242
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.55 E-value=7.3 Score=37.39 Aligned_cols=196 Identities=18% Similarity=0.120 Sum_probs=129.2
Q ss_pred hhHHHHHHHhhcccchHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC--C-hhHHHHHHH-H
Q 046775 400 FVCSSLLNACANLSAYEQGKQVHVHIIKF-GFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPDR--G-IVSWSAMIG-G 474 (771)
Q Consensus 400 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~--~-~~~~~~li~-~ 474 (771)
..+......+...+.+..+.......... ........+..+...+...+....+...+...... + ...+..... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 44444444555555555555555544432 23444555666666677777777777777766532 2 122333333 6
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC--cchHHHHHHHHhh
Q 046775 475 LAQHGRGKEALQMFGQMLEDGVLP----NHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM--QEHYACMIDILGR 548 (771)
Q Consensus 475 ~~~~g~~~~A~~l~~~m~~~g~~p----d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~--~~~y~~lv~~l~r 548 (771)
+...|+.+.|...|++... ..| ....+......+...+..+++...+...... .|. ...+..+...+..
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL---NPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh---CcccchHHHHHhhHHHHH
Confidence 8888889999999988855 344 2234444444466778889999888888754 333 5667788888888
Q ss_pred cCCHHHHHHHHHhCC-CCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 046775 549 AGKFQEAMELVDTMP-FQAN-ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPE 600 (771)
Q Consensus 549 ~g~~~eA~~~~~~m~-~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 600 (771)
.|.+++|...+.... ..|+ ...+..+...+...++.+.+....++.++..|.
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 888999998887763 4454 445666666666667799999999999999986
No 243
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=93.41 E-value=2.8 Score=41.76 Aligned_cols=96 Identities=20% Similarity=0.140 Sum_probs=48.2
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcC---ChHHHHHHHHHHHHCCCCCCHHH-H
Q 046775 431 MSDTFAGNSLVNMYAKCGSIDDADRAFSEIP---DRGIVSWSAMIGGLAQHG---RGKEALQMFGQMLEDGVLPNHIT-L 503 (771)
Q Consensus 431 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~pd~~t-~ 503 (771)
+.|..-|--|...|...|+.+.|..-|.... .+|...+..+..++.... ...++..+|++++. ..|+.++ .
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~--~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA--LDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh--cCCccHHHH
Confidence 4455555556666666666666655555433 334444444444332221 23455556666655 3454443 2
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHH
Q 046775 504 VSVLCACNHAGLVAEAKHHFESMEK 528 (771)
Q Consensus 504 ~~ll~a~~~~g~~~~a~~~~~~m~~ 528 (771)
..+..++...|++.+|...|+.|.+
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh
Confidence 2333355555666666666665553
No 244
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.31 E-value=8.7 Score=37.57 Aligned_cols=140 Identities=14% Similarity=0.120 Sum_probs=87.9
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHH
Q 046775 466 VSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPN----HITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYAC 541 (771)
Q Consensus 466 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~ 541 (771)
..|-.=+..-.+.|++++|.+.|+.+..+ .|. ..+...++.|..+.++.++|+..+++....|+-.|+.. |..
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~--~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~ 111 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSR--HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAY 111 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHH
Confidence 34444455566788999999999998874 232 34666777788888999999999888888877777755 444
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------------ch
Q 046775 542 MIDILGRAGKFQEAMELVDTMP-FQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEK-----------------SS 603 (771)
Q Consensus 542 lv~~l~r~g~~~eA~~~~~~m~-~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~-----------------~~ 603 (771)
.+.++. .+...+ ..-|. .-...|...++.+++--|++ ++
T Consensus 112 YlkgLs----------~~~~i~~~~rDq-------------~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~ 168 (254)
T COG4105 112 YLKGLS----------YFFQIDDVTRDQ-------------SAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAG 168 (254)
T ss_pred HHHHHH----------HhccCCccccCH-------------HHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHH
Confidence 444444 111111 00011 11223333344444444432 22
Q ss_pred hHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 046775 604 THVLLSNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 604 ~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
.-...++.|.+-|.|.-|..-.+.|.+.
T Consensus 169 ~Em~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 169 HEMAIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 2336778999999999999888888765
No 245
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.20 E-value=2.3 Score=38.36 Aligned_cols=98 Identities=14% Similarity=0.097 Sum_probs=68.8
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHhHHHHHHHHHHh
Q 046775 503 LVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAMELVDTMP-FQANASVWGALLGAARI 580 (771)
Q Consensus 503 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p~~~~~~~ll~a~~~ 580 (771)
...+++.-...++.+++..++..+. -+.|. .++-.+-+-++.+.|++.+|..++++.. -.|....-.+|+.-|..
T Consensus 13 Lie~~~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 13 LIEVLSVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 3344455556778888888888887 45776 4444555667889999999999999985 34555667788888877
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchh
Q 046775 581 YKNVEVGQHAAEMLFAIEPEKSST 604 (771)
Q Consensus 581 ~~~~~~a~~~~~~~~~l~p~~~~~ 604 (771)
...-..=...++.+++-.| |+.+
T Consensus 90 ~~~D~~Wr~~A~evle~~~-d~~a 112 (160)
T PF09613_consen 90 ALGDPSWRRYADEVLESGA-DPDA 112 (160)
T ss_pred HcCChHHHHHHHHHHhcCC-ChHH
Confidence 6555555666777877776 4443
No 246
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.09 E-value=3.7 Score=38.70 Aligned_cols=160 Identities=17% Similarity=0.153 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHH-H
Q 046775 466 VSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPN-HITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACM-I 543 (771)
Q Consensus 466 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~l-v 543 (771)
..+|-+.--+...|+++.|.+.|+...+ +.|. ..++..-.-++.-.|+++-|.+-|.+.-+. .|+-- |..+ .
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~---D~~DP-fR~LWL 173 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD---DPNDP-FRSLWL 173 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHHHHHHhc---CCCCh-HHHHHH
Confidence 4566666666667777777777776666 3332 234444444455566666666555444332 23211 2222 1
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------CchhHHHHHHHHHhcC
Q 046775 544 DILGRAGKFQEAMELVDTMPFQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPE-------KSSTHVLLSNIYASAG 616 (771)
Q Consensus 544 ~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~-------~~~~~~~l~~~y~~~g 616 (771)
-+--+.-+..+|..-+.+--..-|..-|+.-+-.+..-+=-+ +.+.+++.+-..+ =+.+|..|+.-|-..|
T Consensus 174 Yl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 174 YLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred HHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 111223344455533322222445556666555443221111 1222233222222 2467999999999999
Q ss_pred CchhHHHHHHHHHhCCC
Q 046775 617 MWDNVAKVRRFMKDNKL 633 (771)
Q Consensus 617 ~~~~a~~~~~~m~~~g~ 633 (771)
..++|..+++.....++
T Consensus 252 ~~~~A~~LfKLaiannV 268 (297)
T COG4785 252 DLDEATALFKLAVANNV 268 (297)
T ss_pred cHHHHHHHHHHHHHHhH
Confidence 99999999998766543
No 247
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.04 E-value=0.18 Score=32.20 Aligned_cols=33 Identities=12% Similarity=0.095 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 046775 569 SVWGALLGAARIYKNVEVGQHAAEMLFAIEPEK 601 (771)
Q Consensus 569 ~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 601 (771)
.+|..+..++...|+.+.|...++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 467788888888999999999999999999863
No 248
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.92 E-value=0.26 Score=31.31 Aligned_cols=32 Identities=22% Similarity=0.198 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 046775 570 VWGALLGAARIYKNVEVGQHAAEMLFAIEPEK 601 (771)
Q Consensus 570 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 601 (771)
+|..+...+...|+.+.|...++++++++|+|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 56677778888888888888888888888865
No 249
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.71 E-value=1.1 Score=39.60 Aligned_cols=58 Identities=19% Similarity=0.245 Sum_probs=43.0
Q ss_pred HhhcCCHHHHHHHHHhC----CCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 046775 546 LGRAGKFQEAMELVDTM----PFQANA-SVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSS 603 (771)
Q Consensus 546 l~r~g~~~eA~~~~~~m----~~~p~~-~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~ 603 (771)
..+.|++++|.+.++.+ |..|-+ -+-..|+.++...++.+.|...+++.++|+|.++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 34667777777777665 444432 25556778889999999999999999999998764
No 250
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.61 E-value=0.97 Score=46.75 Aligned_cols=137 Identities=12% Similarity=0.047 Sum_probs=91.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCC
Q 046775 472 IGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGK 551 (771)
Q Consensus 472 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~ 551 (771)
.+.|.+.|++..|...|++.+.. -++.. .-..++..... ......+..+.-.+.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~--l~~~~-----------~~~~ee~~~~~---------~~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF--LEYRR-----------SFDEEEQKKAE---------ALKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH--hhccc-----------cCCHHHHHHHH---------HHHHHHhhHHHHHHHhhhh
Confidence 45778888888888888887652 11100 00112221111 1112335566677778888
Q ss_pred HHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhH-HHHHHHH
Q 046775 552 FQEAMELVDTM-PFQAN-ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNV-AKVRRFM 628 (771)
Q Consensus 552 ~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a-~~~~~~m 628 (771)
+.+|++.-++. ..+|+ +-..---..||...|+++.|+..++++++++|+|-.+-..|+.+-.+..+.++. .+++..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888777765 34554 335555667888899999999999999999999999888888777766666655 6677777
Q ss_pred Hh
Q 046775 629 KD 630 (771)
Q Consensus 629 ~~ 630 (771)
-.
T Consensus 353 F~ 354 (397)
T KOG0543|consen 353 FA 354 (397)
T ss_pred hh
Confidence 54
No 251
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.47 E-value=3.5 Score=41.02 Aligned_cols=113 Identities=17% Similarity=0.171 Sum_probs=74.1
Q ss_pred HhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHH------HHHHHHhcC
Q 046775 510 CNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAMELVDTMPFQANASVWGA------LLGAARIYK 582 (771)
Q Consensus 510 ~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~------ll~a~~~~~ 582 (771)
....|+..++...|...... .|+ .+.-..|+..|..+|+.++|..++..+|.+-...-|.. ++.-....+
T Consensus 144 ~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34556677777777666543 232 45556677778888888888888888875544433333 222222223
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHH
Q 046775 583 NVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMK 629 (771)
Q Consensus 583 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 629 (771)
+. ..+++-+.-+|+|...-..|+..|-..|+.++|.+..-.+.
T Consensus 221 ~~----~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 221 EI----QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred CH----HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 32 23455567899999999999999999999999987654443
No 252
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.26 E-value=1.1 Score=43.77 Aligned_cols=110 Identities=18% Similarity=0.179 Sum_probs=82.8
Q ss_pred HHHHHhhCC--CCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-----------
Q 046775 453 ADRAFSEIP--DRGIVSWSAMIGGLAQH-----GRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAG----------- 514 (771)
Q Consensus 453 A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g----------- 514 (771)
.+..|.... ++|-.+|-+++..+..+ ++.+---..++.|.+-|+.-|..+|..||..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 455677666 77888888888888765 455556667888999999999999999998764432
Q ss_pred -----cHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCH-HHHHHHHHhCC
Q 046775 515 -----LVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKF-QEAMELVDTMP 563 (771)
Q Consensus 515 -----~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~-~eA~~~~~~m~ 563 (771)
.-+=|+.++++|. .+|+.|+.++-..++.++||.|.. .+-..+.--||
T Consensus 133 ~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 2234788999996 569999999999999999999874 33444444444
No 253
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.13 E-value=0.95 Score=49.75 Aligned_cols=161 Identities=12% Similarity=0.060 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHH-Hhc---cCcHHHHHHHHHHHHHhhCCCCCc
Q 046775 467 SWSAMIGGLAQHGRGKEALQMFGQMLEDG-VLPNH-----ITLVSVLCA-CNH---AGLVAEAKHHFESMEKKFGIQPMQ 536 (771)
Q Consensus 467 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~-----~t~~~ll~a-~~~---~g~~~~a~~~~~~m~~~~~i~p~~ 536 (771)
....++...+-.|+-+.+++++.+..+.+ +.-.. .+|..++.. +.. ....+.+.++++.+.+.| |+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCc
Confidence 34566777778888888888888766532 21111 123333332 232 456777888888887664 665
Q ss_pred chHHHH-HHHHhhcCCHHHHHHHHHhCCC-CC-----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHH-HH
Q 046775 537 EHYACM-IDILGRAGKFQEAMELVDTMPF-QA-----NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHV-LL 608 (771)
Q Consensus 537 ~~y~~l-v~~l~r~g~~~eA~~~~~~m~~-~p-----~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~-~l 608 (771)
..|... ..++...|++++|.+.+++.-. +. ....+--+...+....|.+.|...+.++.+...-+...|. ..
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~ 346 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 444333 4556677888888888876420 11 1222333444556677788888888888877665555554 44
Q ss_pred HHHHHhcCCchhHHHHHHHHHh
Q 046775 609 SNIYASAGMWDNVAKVRRFMKD 630 (771)
Q Consensus 609 ~~~y~~~g~~~~a~~~~~~m~~ 630 (771)
+-+|...|+-+.+.+..+...+
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~ 368 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEE 368 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHH
Confidence 5566777777555555444433
No 254
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=92.08 E-value=19 Score=41.28 Aligned_cols=44 Identities=23% Similarity=0.245 Sum_probs=28.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhcCC
Q 046775 167 AVIAGCVLHEHNDWALKLFQQMKSSEINPNMFTYTSALKACAGME 211 (771)
Q Consensus 167 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 211 (771)
++|--+.+.|+.++|.++..+... ........|...+..+....
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~ 159 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSP 159 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCC
Confidence 466677888888888888755443 24555667777788876653
No 255
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.02 E-value=3.8 Score=36.27 Aligned_cols=114 Identities=14% Similarity=0.075 Sum_probs=68.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhh
Q 046775 472 IGGLAQHGRGKEALQMFGQMLEDGVLPN---HITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGR 548 (771)
Q Consensus 472 i~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r 548 (771)
.....+.|++++|++.|+.+... .+.. ...-..++.++...|++++|...+++..+.+.-.|+ ..|.-...+|+.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHH
Confidence 34445678888888888888775 2222 234666777888888888888888888766544444 235444444432
Q ss_pred cCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 046775 549 AGKFQEAMELVDTMPFQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKS 602 (771)
Q Consensus 549 ~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~ 602 (771)
-...+ ..+..++ +.=+-.+....|...++.+++.-|++.
T Consensus 95 ~~~~~---~~~~~~~------------~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 95 YEQDE---GSLQSFF------------RSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHhh---hHHhhhc------------ccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 22222 2222222 111223346688888999999999664
No 256
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.98 E-value=12 Score=37.48 Aligned_cols=154 Identities=17% Similarity=0.109 Sum_probs=88.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCH
Q 046775 473 GGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKF 552 (771)
Q Consensus 473 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~ 552 (771)
......|++.+|..+|....... +-+...-..+..++...|++++|..++..+-.+.. .........-+..+.++...
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHHhcC
Confidence 34556777777777777777742 22233455666677777888888777776643210 00011122345666777766
Q ss_pred HHHHHHHHhCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCchhHHHHHHHHHhcCCch-hHHHHHHHH
Q 046775 553 QEAMELVDTMPFQAN-ASVWGALLGAARIYKNVEVGQHAAEMLFAI--EPEKSSTHVLLSNIYASAGMWD-NVAKVRRFM 628 (771)
Q Consensus 553 ~eA~~~~~~m~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l--~p~~~~~~~~l~~~y~~~g~~~-~a~~~~~~m 628 (771)
.+..++..+..-.|+ ...-..|...+...|+.+.|..-+=.+++. .-+|..+--.|..++..-|.-+ -+.+.|++|
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 666666666655663 335555556666677776665544444443 2345566666666666666443 344556555
No 257
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.96 E-value=1.3 Score=43.41 Aligned_cols=93 Identities=20% Similarity=0.205 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHH
Q 046775 467 SWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNH----ITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYAC 541 (771)
Q Consensus 467 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~ 541 (771)
.|+.-+.. .+.|++.+|...|...++. -|+. ..+-.|..++...|+.++|..+|..+.++|+-.|. ++.+--
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 36655544 4667799999999998885 3443 24556788888899999999999999988877777 377777
Q ss_pred HHHHHhhcCCHHHHHHHHHhC
Q 046775 542 MIDILGRAGKFQEAMELVDTM 562 (771)
Q Consensus 542 lv~~l~r~g~~~eA~~~~~~m 562 (771)
+...+++.|+.++|...+++.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHH
Confidence 777788888888777776665
No 258
>PRK12798 chemotaxis protein; Reviewed
Probab=91.58 E-value=20 Score=37.73 Aligned_cols=166 Identities=16% Similarity=0.230 Sum_probs=112.9
Q ss_pred cCCHHHHHHHHhhCCC----CChhHHHHHHHHHH-HcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCcHH
Q 046775 447 CGSIDDADRAFSEIPD----RGIVSWSAMIGGLA-QHGRGKEALQMFGQMLEDGVLPNH----ITLVSVLCACNHAGLVA 517 (771)
Q Consensus 447 ~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~g~~~ 517 (771)
.|+.++|.+.+..+.. +.+..+-+|+.+-. ...++.+|+++|++..- ..|-. .....-+.-....|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 6899999999998873 33556777776544 44578999999999887 45643 34444555677899999
Q ss_pred HHHHHHHHHHHhhCCCCCcchHH-HHHHHHhhcC---CHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 046775 518 EAKHHFESMEKKFGIQPMQEHYA-CMIDILGRAG---KFQEAMELVDTMPFQANASVWGALLGAARIYKNVEVGQHAAEM 593 (771)
Q Consensus 518 ~a~~~~~~m~~~~~i~p~~~~y~-~lv~~l~r~g---~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~ 593 (771)
++..+-.+....|.-.|=...|. -++..+.+-+ ..+.-.+++..|+-.--..+|..+...-.+.|+.+.|..+.++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 99888888877776666544433 2333443333 3444445555554222244788888888899999999999999
Q ss_pred HHhcCCCCchhHHHHHHHHHhc
Q 046775 594 LFAIEPEKSSTHVLLSNIYASA 615 (771)
Q Consensus 594 ~~~l~p~~~~~~~~l~~~y~~~ 615 (771)
+..+.+. ...-...+++|...
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aa 303 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGA 303 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHH
Confidence 9999743 34444555666543
No 259
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.39 E-value=7 Score=44.70 Aligned_cols=85 Identities=12% Similarity=0.045 Sum_probs=43.8
Q ss_pred HHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHh---c
Q 046775 372 TAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKFG-FMSDTFAGNSLVNMYAK---C 447 (771)
Q Consensus 372 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g-~~~~~~~~~~Li~~y~k---~ 447 (771)
..+.-.|++|.|++.+.+ ..+...+.+.+...|.-+.-+.-.+... ..+.... -.+...-+..||..|.+ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 445668999999999887 3456778888888877665444333222 2221111 01122456778888876 4
Q ss_pred CCHHHHHHHHhhCC
Q 046775 448 GSIDDADRAFSEIP 461 (771)
Q Consensus 448 g~~~~A~~~f~~~~ 461 (771)
.+..+|.+.|--+.
T Consensus 341 td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 341 TDPREALQYLYLIC 354 (613)
T ss_dssp T-HHHHHHHHHGGG
T ss_pred cCHHHHHHHHHHHH
Confidence 67888888887665
No 260
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.34 E-value=15 Score=35.90 Aligned_cols=180 Identities=15% Similarity=0.113 Sum_probs=105.1
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh------hHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHH
Q 046775 432 SDTFAGNSLVNMYAKCGSIDDADRAFSEIPDRGI------VSWSAMIGGLAQHGRGKEALQMFGQMLED-GVLPNHITLV 504 (771)
Q Consensus 432 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~t~~ 504 (771)
|-...|+.-++ -.+.|++++|.+.|+.+..+.+ .+--.++-++-+.+++++|+..+++.... +-.|| +-|.
T Consensus 33 p~~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~ 110 (254)
T COG4105 33 PASELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYA 110 (254)
T ss_pred CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHH
Confidence 33345554443 3478999999999999984432 23344566788999999999999998883 22333 2344
Q ss_pred HHHHHHhc---c----CcHH---HHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHh--HHH
Q 046775 505 SVLCACNH---A----GLVA---EAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMPFQANAS--VWG 572 (771)
Q Consensus 505 ~ll~a~~~---~----g~~~---~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~--~~~ 572 (771)
..|.+.++ . .+.. +|..-|+....+| |+.. | -.+|..-+.... |.. -=.
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry---PnS~-Y------------a~dA~~~i~~~~---d~LA~~Em 171 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY---PNSR-Y------------APDAKARIVKLN---DALAGHEM 171 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC---CCCc-c------------hhhHHHHHHHHH---HHHHHHHH
Confidence 44444442 1 1122 2223333333332 3211 0 011111111000 000 001
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCch---hHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 046775 573 ALLGAARIYKNVEVGQHAAEMLFAIEPEKSS---THVLLSNIYASAGMWDNVAKVRRFMKDNK 632 (771)
Q Consensus 573 ~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~---~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 632 (771)
+...-+.++|....|..-++.+++--|+.+. ++..|.++|...|.-++|.+..+.+...-
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~ 234 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANY 234 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcC
Confidence 2234567788888888888888887665544 45577788999999999999998887654
No 261
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=91.26 E-value=10 Score=33.71 Aligned_cols=128 Identities=9% Similarity=-0.007 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHH
Q 046775 466 VSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDI 545 (771)
Q Consensus 466 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~ 545 (771)
..-..+|..+.+.+.....+.+++.+...+ ..+....+.++..+.... .++..+++.. .++......++..
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~ 78 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKL 78 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHH
Confidence 334566777777788888888888888775 345556666777666543 3444555542 1223334456667
Q ss_pred HhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 046775 546 LGRAGKFQEAMELVDTMPFQANASVWGALLGAARIY-KNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYA 613 (771)
Q Consensus 546 l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~-~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 613 (771)
+-+.|.++++.-++.++....+ .+...-.+ ++.+.|.+.+++ +.++..|..+.+.+.
T Consensus 79 c~~~~l~~~~~~l~~k~~~~~~------Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 79 CEKAKLYEEAVELYKKDGNFKD------AIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HHHcCcHHHHHHHHHhhcCHHH------HHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 7777777777777777642211 22222233 778888877775 345566666555443
No 262
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.19 E-value=1.2 Score=41.26 Aligned_cols=88 Identities=9% Similarity=0.094 Sum_probs=66.5
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCCC------HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 046775 545 ILGRAGKFQEAMELVDTM-PFQAN------ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGM 617 (771)
Q Consensus 545 ~l~r~g~~~eA~~~~~~m-~~~p~------~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 617 (771)
-+...|.+++|..-+... .+-|. .+.|..-..+.-+.+..+.|...+-+++++.|.+..+.+.-+.+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 355667777777666554 12221 22333334455567889999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHhCC
Q 046775 618 WDNVAKVRRFMKDNK 632 (771)
Q Consensus 618 ~~~a~~~~~~m~~~g 632 (771)
+++|.+-++.+.+..
T Consensus 184 ~eealeDyKki~E~d 198 (271)
T KOG4234|consen 184 YEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999887754
No 263
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.03 E-value=16 Score=35.41 Aligned_cols=21 Identities=33% Similarity=0.503 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHH
Q 046775 436 AGNSLVNMYAKCGSIDDADRA 456 (771)
Q Consensus 436 ~~~~Li~~y~k~g~~~~A~~~ 456 (771)
.++--..+|..||.++.|-..
T Consensus 93 l~eKAs~lY~E~GspdtAAma 113 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMA 113 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHH
Confidence 344444555555555444433
No 264
>PRK09687 putative lyase; Provisional
Probab=90.82 E-value=20 Score=36.33 Aligned_cols=76 Identities=12% Similarity=0.039 Sum_probs=44.4
Q ss_pred CCchHHHhHHHHHHHhcCCHHHHHHHHHhcCCCceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHh
Q 046775 330 ESDDYIVNSLIDAYGKCGHVEDAVKIFKESSAVDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNAC 409 (771)
Q Consensus 330 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 409 (771)
.++..+...-+.++++.|+.+....+.+.+..++ ..-..+.+....|.. +|+..+.++... .||...-...+.+|
T Consensus 203 D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 203 DKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred CCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 4455666666667777776443333444444433 234566677777775 577777777653 34666665555555
Q ss_pred h
Q 046775 410 A 410 (771)
Q Consensus 410 ~ 410 (771)
.
T Consensus 278 ~ 278 (280)
T PRK09687 278 K 278 (280)
T ss_pred h
Confidence 4
No 265
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=90.79 E-value=25 Score=37.31 Aligned_cols=72 Identities=10% Similarity=0.037 Sum_probs=57.1
Q ss_pred HHHHHhCCCCC----CHhHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHH
Q 046775 556 MELVDTMPFQA----NASVWGALLGA--ARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFM 628 (771)
Q Consensus 556 ~~~~~~m~~~p----~~~~~~~ll~a--~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 628 (771)
+.++++..+.| +.-+-+.|..| ...+|++..+.-...-+.+..| ++.+|-+++-+.....++++|..++..+
T Consensus 444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 44555554444 33356666665 4679999999999999999999 9999999999999999999999998743
No 266
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.32 E-value=4.7 Score=43.79 Aligned_cols=103 Identities=18% Similarity=0.089 Sum_probs=66.1
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHH
Q 046775 341 DAYGKCGHVEDAVKIFKESSAVDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQ 420 (771)
Q Consensus 341 ~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 420 (771)
+...++|+++.|.++-++.. +...|..|.....+.|+.+-|.+.|.+... +..++-.+...|+.+.-.+
T Consensus 326 eLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH
T ss_pred HHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHH
Confidence 44557888888888776665 455888999988999999999888887653 4455556666777777666
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 046775 421 VHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEI 460 (771)
Q Consensus 421 i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~ 460 (771)
+.......| . +|.-...+...|++++..+++.+.
T Consensus 395 l~~~a~~~~-~-----~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 395 LAKIAEERG-D-----INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHcc-C-----HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 666666655 1 233333444456666666555443
No 267
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.30 E-value=5.9 Score=40.39 Aligned_cols=224 Identities=16% Similarity=0.065 Sum_probs=100.9
Q ss_pred HHHcCChHHHHHHHHHHhcC--CCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHh--CCCCch---hHHHHHHHHHHh
Q 046775 374 YAQFGLGEEALKLYLEMQDR--EINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKF--GFMSDT---FAGNSLVNMYAK 446 (771)
Q Consensus 374 ~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~--g~~~~~---~~~~~Li~~y~k 446 (771)
+-+..+.++|+..+.+-... .......++..+..+.+..|.++++...-.-.+.. ...... ..|-.|...|.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777765542 11122345666666667766666554432211111 111111 122233333444
Q ss_pred cCCHHHHHHHHhhCC-CCC-------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhcc
Q 046775 447 CGSIDDADRAFSEIP-DRG-------IVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPN-----HITLVSVLCACNHA 513 (771)
Q Consensus 447 ~g~~~~A~~~f~~~~-~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-----~~t~~~ll~a~~~~ 513 (771)
.-++.+++.+-..-. -|+ -..--+|..++.-.+.++++++.|+...+---..+ -..++++.+-+...
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 444444443332211 011 01122344455555566666666666554211111 12456666666666
Q ss_pred CcHHHHHHHHHHHH---HhhCCCCCcchHHHHH-----HHHhhcCCHHHHHHHHHhC-------CCCC-CHhHHHHHHHH
Q 046775 514 GLVAEAKHHFESME---KKFGIQPMQEHYACMI-----DILGRAGKFQEAMELVDTM-------PFQA-NASVWGALLGA 577 (771)
Q Consensus 514 g~~~~a~~~~~~m~---~~~~i~p~~~~y~~lv-----~~l~r~g~~~eA~~~~~~m-------~~~p-~~~~~~~ll~a 577 (771)
.+.++|.-+..+.. ..+++..-..-|.+|+ -.|-..|++-+|.+.-++. .-.| .......+...
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 66666665544332 2233332222333332 2344445544444444332 1111 12234445556
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 046775 578 ARIYKNVEVGQHAAEMLFAI 597 (771)
Q Consensus 578 ~~~~~~~~~a~~~~~~~~~l 597 (771)
+|..|+.|.|.+-++.+...
T Consensus 256 yR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHhcccHhHHHHHHHHHHHH
Confidence 66666666666666555443
No 268
>PRK15331 chaperone protein SicA; Provisional
Probab=90.26 E-value=1.2 Score=40.37 Aligned_cols=83 Identities=11% Similarity=-0.023 Sum_probs=47.2
Q ss_pred HhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 046775 445 AKCGSIDDADRAFSEIP---DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKH 521 (771)
Q Consensus 445 ~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 521 (771)
-..|++++|..+|.-+. .-|..-|..|...+-..+++++|+..|......+ .-|...+.....++...|+.+.|+.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHH
Confidence 34566666666666543 2334456666666666666666666666655532 1233334444555566666666666
Q ss_pred HHHHHHH
Q 046775 522 HFESMEK 528 (771)
Q Consensus 522 ~~~~m~~ 528 (771)
.|....+
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 6666553
No 269
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=90.10 E-value=18 Score=39.87 Aligned_cols=147 Identities=16% Similarity=0.094 Sum_probs=98.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC-CCh---------hHHHHHHHHHHHc----CChHHHHHHHHHHHHCCCCCCHH
Q 046775 436 AGNSLVNMYAKCGSIDDADRAFSEIPD-RGI---------VSWSAMIGGLAQH----GRGKEALQMFGQMLEDGVLPNHI 501 (771)
Q Consensus 436 ~~~~Li~~y~k~g~~~~A~~~f~~~~~-~~~---------~~~~~li~~~~~~----g~~~~A~~l~~~m~~~g~~pd~~ 501 (771)
....++...+=.|+-+.+.+.+....+ .++ ..|..++..+... ...+.|.++++++.+ --||..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~--~yP~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK--RYPNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH--hCCCcH
Confidence 346778888888999999998887653 332 3466666555543 467889999999998 578887
Q ss_pred HHHHHH-HHHhccCcHHHHHHHHHHHHHhhCCCCCcch--HHHHHHHHhhcCCHHHHHHHHHhCCCCC--CHhHHHHHHH
Q 046775 502 TLVSVL-CACNHAGLVAEAKHHFESMEKKFGIQPMQEH--YACMIDILGRAGKFQEAMELVDTMPFQA--NASVWGALLG 576 (771)
Q Consensus 502 t~~~ll-~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~--y~~lv~~l~r~g~~~eA~~~~~~m~~~p--~~~~~~~ll~ 576 (771)
-|...- .-+...|++++|++.|+.....-.--|...| +--+.-.+.-.+++++|.+.+..+.-.- ...+|.-+.+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 665433 3567789999999999976532111223332 2234455788999999999999885322 3345555555
Q ss_pred HHH-hcCCH
Q 046775 577 AAR-IYKNV 584 (771)
Q Consensus 577 a~~-~~~~~ 584 (771)
+|. ..++.
T Consensus 348 ~c~~~l~~~ 356 (468)
T PF10300_consen 348 ACLLMLGRE 356 (468)
T ss_pred HHHHhhccc
Confidence 554 34555
No 270
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=90.01 E-value=16 Score=38.33 Aligned_cols=72 Identities=21% Similarity=0.254 Sum_probs=43.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---ceecHH----HHHHHHHH---cCChHHHHHHHHHHhcCCCCCCHhhHHHHHH
Q 046775 338 SLIDAYGKCGHVEDAVKIFKESSAV---DLVACT----SMITAYAQ---FGLGEEALKLYLEMQDREINPDSFVCSSLLN 407 (771)
Q Consensus 338 ~Li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~----~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 407 (771)
.|+-.|....+++...++.+.++.. ++..-. -..-++.+ .|+.++|++++..+....-.+++.|+..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444577777777777777766543 111111 12223445 6788888888888665556677777766655
Q ss_pred Hh
Q 046775 408 AC 409 (771)
Q Consensus 408 a~ 409 (771)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 54
No 271
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.99 E-value=9.3 Score=39.02 Aligned_cols=64 Identities=16% Similarity=0.247 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHh-ccC--cHHHHHHHHHHHHHhhCCCCCcchHHHHHHH
Q 046775 481 GKEALQMFGQMLEDGVLPNHI-TLVSVLCACN-HAG--LVAEAKHHFESMEKKFGIQPMQEHYACMIDI 545 (771)
Q Consensus 481 ~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~-~~g--~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~ 545 (771)
.+.+...|+.+...|+..+.. -+.+-+-++. ... .+....++++.+.+. |+++...||..+.-+
T Consensus 159 ~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 159 AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHHH
Confidence 356677888888888776543 3444333333 222 255788888888877 999998888766543
No 272
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=89.67 E-value=8.9 Score=41.12 Aligned_cols=217 Identities=17% Similarity=0.134 Sum_probs=105.6
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHH---HH
Q 046775 479 GRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQ---EA 555 (771)
Q Consensus 479 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~---eA 555 (771)
.+.+.-+++-++.++ +.||-.+-..+| |--.+.-+.++.++|++..+.- .. .|++....+ ..
T Consensus 182 Rnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAg-----E~-------~lg~s~~~~~~g~~ 246 (539)
T PF04184_consen 182 RNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAG-----EA-------SLGKSQFLQHHGHF 246 (539)
T ss_pred CCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHH-----HH-------hhchhhhhhcccch
Confidence 445666666666666 667766544333 2233445677777777665431 00 011111000 01
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CchhHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 046775 556 MELVDTMPFQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPE--KSSTHVLLSNIYASAGMWDNVAKVRRFMKDNKL 633 (771)
Q Consensus 556 ~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~--~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 633 (771)
.+.+.+-...|-..+=..|...+++.|..++|.+.++.+++..|. +-+.+..|.+.+-..+++.|+..+..+-.+..+
T Consensus 247 ~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l 326 (539)
T PF04184_consen 247 WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL 326 (539)
T ss_pred hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC
Confidence 111111112233334445555667777777777777777766664 345666777777777777777777666544333
Q ss_pred ccCCccceEEEcCEEEEE-EeCCCCccc-------hHHHHHHHHHHHHHHHhcCcccCCccccCCcchhhhhhhh-cccc
Q 046775 634 KKEPGMSWIEVKDKVYTF-TVGDRSHAR-------SKEIYAKLDEVSDLLNKAGYVPMVETDLHDVEESEKEQLL-YHHS 704 (771)
Q Consensus 634 ~k~~g~s~i~~~~~~~~f-~~~~~~h~~-------~~~i~~~l~~l~~~~~~~g~~p~~~~~~~~~~~~~~~~~~-~~hs 704 (771)
.|..-.+|-. ..-.| .+||+..|+ +......++-+.+.++.--+||+--.-.-.+.-- =|.++ ..-|
T Consensus 327 pkSAti~YTa---ALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilP-PehilkrGDS 402 (539)
T PF04184_consen 327 PKSATICYTA---ALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILP-PEHILKRGDS 402 (539)
T ss_pred CchHHHHHHH---HHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCC-hHHhcCCCcH
Confidence 2222222210 00000 123332232 1222335566777777778888632221111100 12222 2347
Q ss_pred HHHHHHcccc
Q 046775 705 EKLAVAFGLI 714 (771)
Q Consensus 705 e~la~~~~~~ 714 (771)
|-+|-||--+
T Consensus 403 EAiaYAf~hL 412 (539)
T PF04184_consen 403 EAIAYAFFHL 412 (539)
T ss_pred HHHHHHHHHH
Confidence 8777776533
No 273
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.40 E-value=3.4 Score=41.57 Aligned_cols=160 Identities=13% Similarity=0.035 Sum_probs=111.4
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHH----HHHHhhcCCH
Q 046775 477 QHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACM----IDILGRAGKF 552 (771)
Q Consensus 477 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~l----v~~l~r~g~~ 552 (771)
-.|+..+|-..++++++. .+.|-..+.-.=.+|...|..+.-...++++... -.|+...|..+ .-.|...|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 368888999999999885 5667778888888999999999999888887643 35666555443 4455689999
Q ss_pred HHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CchhHHHHHHHHHhcCCchhHHHHHH
Q 046775 553 QEAMELVDTM-PFQAN-ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPE----KSSTHVLLSNIYASAGMWDNVAKVRR 626 (771)
Q Consensus 553 ~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~----~~~~~~~l~~~y~~~g~~~~a~~~~~ 626 (771)
++|++.-++. .+.|. .-.-.++.......++..+|.+..++--..=.+ -+-.|...+-.|...+.++.|.++++
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999998887 34443 224445555666778888887766554332111 13346666667888899999999977
Q ss_pred HHHhCCCccCCcc
Q 046775 627 FMKDNKLKKEPGM 639 (771)
Q Consensus 627 ~m~~~g~~k~~g~ 639 (771)
.=.-+.+.|..+.
T Consensus 272 ~ei~k~l~k~Da~ 284 (491)
T KOG2610|consen 272 REIWKRLEKDDAV 284 (491)
T ss_pred HHHHHHhhccchh
Confidence 5544445555553
No 274
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.37 E-value=2.5 Score=38.17 Aligned_cols=63 Identities=16% Similarity=0.274 Sum_probs=48.0
Q ss_pred HHHHHHHH---HHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 046775 570 VWGALLGA---ARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDNK 632 (771)
Q Consensus 570 ~~~~ll~a---~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 632 (771)
+.+.|+.. -..+++.+.++.++.-+.-+.|+.+..-..-++++...|+|.+|.++++.+.+++
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 44444443 3456788888888888888888888888888888888888888888888876665
No 275
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.11 E-value=4.1 Score=40.09 Aligned_cols=101 Identities=17% Similarity=0.171 Sum_probs=62.2
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC-CcchHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCH-hHHHHHHH
Q 046775 503 LVSVLCACNHAGLVAEAKHHFESMEKKFGIQP-MQEHYACMIDILGRAGKFQEAMELVDTM----PFQANA-SVWGALLG 576 (771)
Q Consensus 503 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~~-~~~~~ll~ 576 (771)
|..-+. +...|++.+|..-|....+.|.-.+ ....+-.|...+...|++++|...|..+ |-.|.. ..+--|.-
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 444433 3456778888888888887752222 1344556777777777777777766554 333332 23334444
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchh
Q 046775 577 AARIYKNVEVGQHAAEMLFAIEPEKSST 604 (771)
Q Consensus 577 a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 604 (771)
.....||.+.|...++.+.+--|+.+.+
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 5566677777777777777777765543
No 276
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.05 E-value=33 Score=36.09 Aligned_cols=146 Identities=10% Similarity=-0.029 Sum_probs=80.6
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHHHHh-hCCCCCcch
Q 046775 463 RGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLP---NHITLVSVLCACNHAGLVAEAKHHFESMEKK-FGIQPMQEH 538 (771)
Q Consensus 463 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~i~p~~~~ 538 (771)
....+|..++..+.+.|+++.|...+.++...+..+ +...+..-....-..|+-++|...++...+. ..-..+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 345678888999999999999999998888744222 2223333344455578888888888777652 111101111
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC--C-CCC--CHhHHHHHHHHHHh------cCCHHHHHHHHHHHHhcCCCCchhHHH
Q 046775 539 YACMIDILGRAGKFQEAMELVDTM--P-FQA--NASVWGALLGAARI------YKNVEVGQHAAEMLFAIEPEKSSTHVL 607 (771)
Q Consensus 539 y~~lv~~l~r~g~~~eA~~~~~~m--~-~~p--~~~~~~~ll~a~~~------~~~~~~a~~~~~~~~~l~p~~~~~~~~ 607 (771)
...+...+.. ..+....- . ..+ -..++..+..-+.. +++.+.+...++.+.++.|+...+|..
T Consensus 224 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~ 297 (352)
T PF02259_consen 224 NAELKSGLLE------SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHS 297 (352)
T ss_pred HHHHhhcccc------ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHH
Confidence 1111110000 00000000 0 000 01122222222333 377888999999999999988888888
Q ss_pred HHHHHHh
Q 046775 608 LSNIYAS 614 (771)
Q Consensus 608 l~~~y~~ 614 (771)
++..+..
T Consensus 298 ~a~~~~~ 304 (352)
T PF02259_consen 298 WALFNDK 304 (352)
T ss_pred HHHHHHH
Confidence 8776654
No 277
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.64 E-value=0.56 Score=30.45 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=21.3
Q ss_pred hHHHHHHHHHhcCCchhHHHHHHHH
Q 046775 604 THVLLSNIYASAGMWDNVAKVRRFM 628 (771)
Q Consensus 604 ~~~~l~~~y~~~g~~~~a~~~~~~m 628 (771)
+|..|+++|.+.|+|++|.++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4778999999999999999998874
No 278
>PRK09687 putative lyase; Provisional
Probab=88.55 E-value=30 Score=35.08 Aligned_cols=130 Identities=11% Similarity=0.059 Sum_probs=69.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhccc-chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 046775 370 MITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLS-AYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCG 448 (771)
Q Consensus 370 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g 448 (771)
.+.++.+.++ ++|+..+..+.. .+|...-...+.++.+.+ .-+.+...+..+. -.++..+-..-+.+.++.|
T Consensus 148 a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L---~D~~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 148 VAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAML---QDKNEEIRIEAIIGLALRK 220 (280)
T ss_pred HHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHh---cCCChHHHHHHHHHHHccC
Confidence 3444444443 345555555554 234444444444444432 1223333333333 2456666677777777777
Q ss_pred CHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 046775 449 SIDDADRAFSEIPDRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACN 511 (771)
Q Consensus 449 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 511 (771)
+..-...+.+.+..+++ .-..+.+++..|.. +|+..+.++... .||...-...+.+|.
T Consensus 221 ~~~av~~Li~~L~~~~~--~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 221 DKRVLSVLIKELKKGTV--GDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred ChhHHHHHHHHHcCCch--HHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 75433334444444332 34567788888874 688888888873 457665555555554
No 279
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.42 E-value=2.6 Score=37.39 Aligned_cols=54 Identities=13% Similarity=0.124 Sum_probs=47.4
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 046775 580 IYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDNKL 633 (771)
Q Consensus 580 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 633 (771)
.+.+.+.++.+...+--+.|+.+..-..-++++...|+|+||.++++...+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 378888899999999999999999999999999999999999999988877653
No 280
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.17 E-value=12 Score=37.74 Aligned_cols=173 Identities=11% Similarity=0.127 Sum_probs=111.6
Q ss_pred hcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH--HH-HHH-HHHhccCcHHH
Q 046775 446 KCGSIDDADRAFSEIP---DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHIT--LV-SVL-CACNHAGLVAE 518 (771)
Q Consensus 446 k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t--~~-~ll-~a~~~~g~~~~ 518 (771)
-.|+..+|...++++. ..|..+|+--=.+|.-.|+-..-...+++..-. ..||... |+ .+. .++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 3577778777777776 567889999999999999999999999988764 4566643 32 222 24456788999
Q ss_pred HHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhCCCCCC-------HhHHHHHHHHHHh-cCCHHHHHH
Q 046775 519 AKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAMELVDTMPFQAN-------ASVWGALLGAARI-YKNVEVGQH 589 (771)
Q Consensus 519 a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~-------~~~~~~ll~a~~~-~~~~~~a~~ 589 (771)
|.+.-++.. .|.|. .-.-.+....+-..|+..|+.+|+.+-.-.-+ .--|..-+ |.+ .+.++.|+.
T Consensus 194 AEk~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al--~~iE~aeye~ale 268 (491)
T KOG2610|consen 194 AEKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTAL--FHIEGAEYEKALE 268 (491)
T ss_pred HHHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHH--hhhcccchhHHHH
Confidence 988776654 34443 22334567778899999999999988642111 11232222 222 367888888
Q ss_pred HHHHH--HhcCCCCchhHH---HHHHHHHhcCCchhHHHH
Q 046775 590 AAEML--FAIEPEKSSTHV---LLSNIYASAGMWDNVAKV 624 (771)
Q Consensus 590 ~~~~~--~~l~p~~~~~~~---~l~~~y~~~g~~~~a~~~ 624 (771)
++.+- -+++.+|+.+.. -+--+-...-.|.+-.++
T Consensus 269 IyD~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~l 308 (491)
T KOG2610|consen 269 IYDREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKL 308 (491)
T ss_pred HHHHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhh
Confidence 88764 356776764432 233344444445444433
No 281
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.01 E-value=0.9 Score=28.76 Aligned_cols=31 Identities=13% Similarity=0.082 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 046775 570 VWGALLGAARIYKNVEVGQHAAEMLFAIEPE 600 (771)
Q Consensus 570 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 600 (771)
+|..+...+...|+.+.|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4666666777788888888888888888874
No 282
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.73 E-value=3.5 Score=41.18 Aligned_cols=74 Identities=15% Similarity=0.188 Sum_probs=59.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 046775 434 TFAGNSLVNMYAKCGSIDDADRAFSEIPD---RGIVSWSAMIGGLAQHGRGKEALQMFGQMLE-----DGVLPNHITLVS 505 (771)
Q Consensus 434 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~~t~~~ 505 (771)
..+++.++..|..+|+.+.+.+.+++... -|...|..++.+|.+.|+...|+..|+++.+ .|+.|-..+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 45678889999999999999999988764 3567899999999999999999999998876 466666655443
Q ss_pred HH
Q 046775 506 VL 507 (771)
Q Consensus 506 ll 507 (771)
..
T Consensus 233 y~ 234 (280)
T COG3629 233 YE 234 (280)
T ss_pred HH
Confidence 33
No 283
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=87.68 E-value=6.5 Score=43.83 Aligned_cols=182 Identities=18% Similarity=0.318 Sum_probs=108.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhcCCCCCCH----------hhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHH
Q 046775 368 TSMITAYAQFGLGEEALKLYLEMQDREINPDS----------FVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAG 437 (771)
Q Consensus 368 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----------~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~ 437 (771)
..|+-.|-...+++..+++.+.++. -||. +.|...|+-=-+-|+-++|..+.--+++..-+..+
T Consensus 205 ~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap--- 278 (1226)
T KOG4279|consen 205 SNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP--- 278 (1226)
T ss_pred HHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC---
Confidence 3455566666777777777777664 2322 22333333333456666776665555443212221
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHhccC
Q 046775 438 NSLVNMYAKCGSIDDADRAFSEIPDRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHIT---LVSVLCACNHAG 514 (771)
Q Consensus 438 ~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t---~~~ll~a~~~~g 514 (771)
+||+-||++- +.|- +-+.|...+..+.|++.|++..+ +.|+..+ +..||.|-.+.
T Consensus 279 ----Dm~Cl~GRIY------KDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~~- 336 (1226)
T KOG4279|consen 279 ----DMYCLCGRIY------KDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGEH- 336 (1226)
T ss_pred ----ceeeeechhh------hhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhhh-
Confidence 4677777653 2222 12334455566788888888887 7887653 44555443221
Q ss_pred cHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 046775 515 LVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMPFQANASVWGALLGAARIYKNVEVGQHAAEML 594 (771)
Q Consensus 515 ~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~ 594 (771)
++.-.+ |... | -.+-.+++|.|.++.-.++++- .+.+++....+|...|..+++++
T Consensus 337 -Fens~E----lq~I-g--------mkLn~LlgrKG~leklq~YWdV----------~~y~~asVLAnd~~kaiqAae~m 392 (1226)
T KOG4279|consen 337 -FENSLE----LQQI-G--------MKLNSLLGRKGALEKLQEYWDV----------ATYFEASVLANDYQKAIQAAEMM 392 (1226)
T ss_pred -ccchHH----HHHH-H--------HHHHHHhhccchHHHHHHHHhH----------HHhhhhhhhccCHHHHHHHHHHH
Confidence 111111 1111 1 2244678999999988777763 45677888889999999999999
Q ss_pred HhcCCCC
Q 046775 595 FAIEPEK 601 (771)
Q Consensus 595 ~~l~p~~ 601 (771)
+++.|..
T Consensus 393 fKLk~P~ 399 (1226)
T KOG4279|consen 393 FKLKPPV 399 (1226)
T ss_pred hccCCce
Confidence 9999854
No 284
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.62 E-value=59 Score=37.39 Aligned_cols=117 Identities=11% Similarity=-0.015 Sum_probs=65.9
Q ss_pred HHHHHHHhcCChhHHHHHHccCCCCCcccHHHH---HHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhcCCc
Q 046775 136 ALVDMYAKVGNLEDAVAVFKDIEHPDIVSWNAV---IAGCVLHEHNDWALKLFQQMKSSEINPNMFTYTSALKACAGMEL 212 (771)
Q Consensus 136 ~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~n~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 212 (771)
.-+++..+...++.|..+-..-..+....-+.+ ..-+.+.|++++|..-|-+-... +.| ..+++-+.....
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~ 412 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQR 412 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHH
Confidence 345555555666666665544332211111111 12344668888888777654322 233 234444444444
Q ss_pred HHHHHHHHHHHHHccCCCChhHHHHHHHhhhcCCChHHHHHHhhhCC
Q 046775 213 KELGRQLHCSLIKMEIKSDPIVGVGLVDMYAKCGSMDEARMIFHLMP 259 (771)
Q Consensus 213 ~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 259 (771)
...--.+++.+.+.|+... ..-+.|+.+|.|.++.+.-.+..+...
T Consensus 413 IknLt~YLe~L~~~gla~~-dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLANS-DHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHcccccc-hhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 5555556667777776533 334568888999888888777766654
No 285
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=87.55 E-value=1.6 Score=29.85 Aligned_cols=33 Identities=21% Similarity=0.423 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 046775 467 SWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHI 501 (771)
Q Consensus 467 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 501 (771)
+|..+...|...|++++|+++|++.++ ..||..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCH
Confidence 466677777777777777777777777 456554
No 286
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.02 E-value=27 Score=34.80 Aligned_cols=61 Identities=13% Similarity=0.012 Sum_probs=52.9
Q ss_pred HHHHHH----HHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHh
Q 046775 570 VWGALL----GAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKD 630 (771)
Q Consensus 570 ~~~~ll----~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 630 (771)
++..++ .+|...|++..|....++++.++|-+...+..|.++|+..|+--.|.+-+..|.+
T Consensus 277 ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 277 LYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 444454 4778899999999999999999999999999999999999998888888777754
No 287
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.82 E-value=1.4 Score=27.96 Aligned_cols=32 Identities=25% Similarity=0.354 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 046775 466 VSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPN 499 (771)
Q Consensus 466 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 499 (771)
.+|..+...|...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 3567777777777777788777777777 4554
No 288
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=86.78 E-value=1.4 Score=28.47 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 046775 467 SWSAMIGGLAQHGRGKEALQMFGQML 492 (771)
Q Consensus 467 ~~~~li~~~~~~g~~~~A~~l~~~m~ 492 (771)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666777777777777777777644
No 289
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=85.82 E-value=5 Score=40.13 Aligned_cols=62 Identities=16% Similarity=0.157 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 046775 570 VWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 570 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
+...++.+....|+.+.+....+++++++|-|...|..|...|...|+...|...++.+++.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 34556667778899999999999999999999999999999999999999999998888763
No 290
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.67 E-value=16 Score=32.55 Aligned_cols=86 Identities=16% Similarity=0.114 Sum_probs=56.8
Q ss_pred HhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHhHHHHHHHHHHhc-CCHHH
Q 046775 510 CNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAMELVDTMPFQA-NASVWGALLGAARIY-KNVEV 586 (771)
Q Consensus 510 ~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p-~~~~~~~ll~a~~~~-~~~~~ 586 (771)
-...++.+++..+++.|. -+.|+ .+.-.+-+-++.+.|+++||..++++..-.+ ....-.+|+.-|... ||.+
T Consensus 20 aL~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~- 95 (153)
T TIGR02561 20 ALRSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE- 95 (153)
T ss_pred HHhcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH-
Confidence 334788888888888887 45666 3444455667788999999999999986444 445556777777554 4443
Q ss_pred HHHHHHHHHhcCC
Q 046775 587 GQHAAEMLFAIEP 599 (771)
Q Consensus 587 a~~~~~~~~~l~p 599 (771)
=...++.+++-.+
T Consensus 96 Wr~~A~~~le~~~ 108 (153)
T TIGR02561 96 WHVHADEVLARDA 108 (153)
T ss_pred HHHHHHHHHHhCC
Confidence 3444555555543
No 291
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.41 E-value=3.1 Score=41.85 Aligned_cols=110 Identities=17% Similarity=0.191 Sum_probs=68.1
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCC
Q 046775 473 GGLAQHGRGKEALQMFGQMLEDGVLP-NHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGK 551 (771)
Q Consensus 473 ~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~ 551 (771)
+-|.+.|.+++|+..|.+-+. +.| |.+++..-..||.+...+..|..-.+..... -...+.+|.|.|.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~~Y~KAYSRR~~ 173 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DKLYVKAYSRRMQ 173 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hHHHHHHHHHHHH
Confidence 568888888888888887776 566 7888887777777776666554433332211 0122344444333
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHH
Q 046775 552 FQEAMELVDTMPFQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVA 622 (771)
Q Consensus 552 ~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 622 (771)
|-...|+.++|..-++.+++|+|++.. |-..|+......++.
T Consensus 174 -------------------------AR~~Lg~~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~ 215 (536)
T KOG4648|consen 174 -------------------------ARESLGNNMEAKKDCETVLALEPKNIE----LKKSLARINSLRERK 215 (536)
T ss_pred -------------------------HHHHHhhHHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhh
Confidence 333456778888999999999997544 334444444444443
No 292
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=84.78 E-value=26 Score=30.52 Aligned_cols=58 Identities=14% Similarity=0.185 Sum_probs=25.2
Q ss_pred HHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHhC
Q 046775 371 ITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKFG 429 (771)
Q Consensus 371 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 429 (771)
+....+.|+-+.-.++++++.. +-+|++..+..+..||.+.|+..++..++..+-+.|
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3444445555555555555443 224444455555555555555555555555544444
No 293
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.68 E-value=7 Score=39.08 Aligned_cols=98 Identities=14% Similarity=0.232 Sum_probs=73.2
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCC--------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 046775 428 FGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIP-DRG--------IVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLP 498 (771)
Q Consensus 428 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~-~~~--------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 498 (771)
.|.+....+...+++.-....+++++...+-... .++ .++|-.++.- =++++++.++..=++.|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk----y~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK----YDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc----cChHHHHHHHhCcchhcccc
Confidence 3555566666777777777788888888777665 333 2344333332 36789999999999999999
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 046775 499 NHITLVSVLCACNHAGLVAEAKHHFESMEKK 529 (771)
Q Consensus 499 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 529 (771)
|..|+..++..+.+.+.+.+|.++...|...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999988877666543
No 294
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.65 E-value=8.6 Score=31.22 Aligned_cols=69 Identities=10% Similarity=0.090 Sum_probs=49.0
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 046775 554 EAMELVDTMPFQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDNKL 633 (771)
Q Consensus 554 eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 633 (771)
.++.-+-.+..-|++.+..+-|.|||+-+|+..|.++++-+...-..+...|-.+ ..+++-.|.+.|+
T Consensus 28 r~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~------------lqeikp~l~ELGI 95 (103)
T cd00923 28 RGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYI------------LQEIKPTLKELGI 95 (103)
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHH------------HHHHhHHHHHHCC
Confidence 3344444556889999999999999999999999999998764433344444433 2456667777776
Q ss_pred c
Q 046775 634 K 634 (771)
Q Consensus 634 ~ 634 (771)
.
T Consensus 96 ~ 96 (103)
T cd00923 96 S 96 (103)
T ss_pred C
Confidence 3
No 295
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=84.61 E-value=2.4 Score=30.38 Aligned_cols=36 Identities=19% Similarity=0.213 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 046775 573 ALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLL 608 (771)
Q Consensus 573 ~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l 608 (771)
.|.-++.+.|+.+.|.+..+.+++++|+|..+-.+.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 345578899999999999999999999988765443
No 296
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=84.02 E-value=12 Score=32.34 Aligned_cols=53 Identities=26% Similarity=0.241 Sum_probs=27.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 046775 475 LAQHGRGKEALQMFGQMLEDGVLP-NHITLVSVLCACNHAGLVAEAKHHFESMEKK 529 (771)
Q Consensus 475 ~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 529 (771)
.+..|+.+.|++.|.+.+. +-| +...|+.-..++.-.|+.++|+.-+++..+.
T Consensus 53 laE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 4445555555555555555 222 3334555555555555555555555554443
No 297
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=83.91 E-value=28 Score=32.01 Aligned_cols=133 Identities=12% Similarity=0.001 Sum_probs=68.1
Q ss_pred HHHHHhHHCCCCCCcchHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCCChh-hHHHHHHHHHhcCChhHHHHHHccCCCC
Q 046775 82 CFFKEMVLSGIRPNEFSLSSMINACAGSGDSLLGRKIHGYSIKLGYDSDMF-SANALVDMYAKVGNLEDAVAVFKDIEHP 160 (771)
Q Consensus 82 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~-~~~~Li~~y~~~g~~~~A~~~f~~~~~~ 160 (771)
++.+.+.+.+++|+...+..+++.+.+.|...... +++..++-+|.. +...|++.- +....+.++=-.|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~---~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLG---NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhH---ccChHHHHHHHHHHHH
Confidence 44555556677777777777777777777654332 333444433332 222222221 1122222222222222
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhcCCcHHHHHHHHHHHHH
Q 046775 161 DIVSWNAVIAGCVLHEHNDWALKLFQQMKSSEINPNMFTYTSALKACAGMELKELGRQLHCSLIK 225 (771)
Q Consensus 161 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~ 225 (771)
=...+..++..+...|++-+|+++.+..... +......++.+....+|...--.++.....
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2224556667777788888888877664221 222334456666666665555555555444
No 298
>PRK10941 hypothetical protein; Provisional
Probab=83.66 E-value=7.2 Score=39.09 Aligned_cols=62 Identities=19% Similarity=0.164 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 046775 570 VWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 570 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
..+.|-.++...++.+.|.++.++++.+.|+++.-+--.+-+|+..|.|..|..-.+.-.+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 34566678889999999999999999999999998989999999999999998877655444
No 299
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=82.99 E-value=24 Score=33.01 Aligned_cols=59 Identities=20% Similarity=0.198 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046775 435 FAGNSLVNMYAKCGSIDDADRAFSEIPDRG------IVSWSAMIGGLAQHGRGKEALQMFGQMLE 493 (771)
Q Consensus 435 ~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 493 (771)
..+..+.+.|.+.|+++.|.+.|.++.+.. +..+-.+|......|++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345667777777777777777777765433 23455556666666666666666655554
No 300
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.67 E-value=10 Score=31.19 Aligned_cols=69 Identities=9% Similarity=0.072 Sum_probs=44.4
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 046775 554 EAMELVDTMPFQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDNKL 633 (771)
Q Consensus 554 eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 633 (771)
.++.-+-.+..-|++.+..+-|.|||+.+|+..|.++++-+...-.+....|-.+ ..+++-.+.+.||
T Consensus 31 rglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~------------lqElkPtl~ELGI 98 (108)
T PF02284_consen 31 RGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYI------------LQELKPTLEELGI 98 (108)
T ss_dssp HHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHH------------HHHHHHHHHHHT-
T ss_pred HHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHH------------HHHHhhHHHHhCC
Confidence 3444444556789999999999999999999999999998876544344345433 2456666677776
Q ss_pred c
Q 046775 634 K 634 (771)
Q Consensus 634 ~ 634 (771)
.
T Consensus 99 ~ 99 (108)
T PF02284_consen 99 P 99 (108)
T ss_dssp -
T ss_pred C
Confidence 3
No 301
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=82.22 E-value=69 Score=33.56 Aligned_cols=64 Identities=17% Similarity=0.217 Sum_probs=53.6
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CchhHHHHHHHHHhcCCchhHHHHHHHHHh
Q 046775 567 NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPE----KSSTHVLLSNIYASAGMWDNVAKVRRFMKD 630 (771)
Q Consensus 567 ~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~----~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 630 (771)
....|..+...||++|+++.|..++.++...++. .+...+.-+.+....|+-++|....+....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3458999999999999999999999999987632 456677779999999999999988776665
No 302
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=82.20 E-value=15 Score=34.38 Aligned_cols=96 Identities=17% Similarity=0.143 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCC--CC----cc
Q 046775 466 VSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHI--TLVSVLCACNHAGLVAEAKHHFESMEKKFGIQ--PM----QE 537 (771)
Q Consensus 466 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~--p~----~~ 537 (771)
..|..+..-|.+.|+.++|++.|.++.+....|... .+..++..+...|++.....+..+......-. ++ ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 467788999999999999999999999987777765 46788888899999999998888776432211 11 22
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhCC
Q 046775 538 HYACMIDILGRAGKFQEAMELVDTMP 563 (771)
Q Consensus 538 ~y~~lv~~l~r~g~~~eA~~~~~~m~ 563 (771)
.|..+.. ...|++.+|-+.|-+.+
T Consensus 117 ~~~gL~~--l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLAN--LAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHH--HHhchHHHHHHHHHccC
Confidence 3333332 34679999888876663
No 303
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=82.02 E-value=2.7 Score=26.35 Aligned_cols=31 Identities=32% Similarity=0.493 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 046775 467 SWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPN 499 (771)
Q Consensus 467 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 499 (771)
.|..+...|.+.|++++|++.|++.++ +.|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 466677777777888888888877776 4454
No 304
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=81.70 E-value=31 Score=35.26 Aligned_cols=126 Identities=10% Similarity=0.186 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhc--c----cchHHHHHHHHHHHHhCC---CCchhHHHHHHHHHHhcCCH
Q 046775 380 GEEALKLYLEMQDREINPDSFVCSSLLNACAN--L----SAYEQGKQVHVHIIKFGF---MSDTFAGNSLVNMYAKCGSI 450 (771)
Q Consensus 380 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~--~----~~~~~a~~i~~~~~~~g~---~~~~~~~~~Li~~y~k~g~~ 450 (771)
+++.+.+++.|.+.|++-+..+|.+.+..... . .....++.+++.|.+... .++...+.+|+.+ ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34567788888888888888777764444333 1 235678888999987653 2344455555433 33333
Q ss_pred ----HHHHHHHhhCCC-----CCh-hHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046775 451 ----DDADRAFSEIPD-----RGI-VSWSAMIGGLAQHGR--GKEALQMFGQMLEDGVLPNHITLVSVL 507 (771)
Q Consensus 451 ----~~A~~~f~~~~~-----~~~-~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~pd~~t~~~ll 507 (771)
+.++..|+.+.+ .|. .....++........ ..++.++++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 345556655542 233 333333332222222 458899999999999998877665443
No 305
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=81.40 E-value=79 Score=33.66 Aligned_cols=144 Identities=16% Similarity=0.186 Sum_probs=88.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH-HHH
Q 046775 433 DTFAGNSLVNMYAKCGSIDDADRAFSEIP-----DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITL-VSV 506 (771)
Q Consensus 433 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~-~~l 506 (771)
-..++..+++.-.+..-++.|+.+|-+.. .+++..++++|.-+++ |+..-|..+|+--.. -.||...| .-.
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~--~f~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLL--KFPDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHH--hCCCchHHHHHH
Confidence 34566677777777777788888887665 3456677777776665 566777777776555 34555443 334
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhhCCCCC--cchHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHhHHHHHHHHHHhc
Q 046775 507 LCACNHAGLVAEAKHHFESMEKKFGIQPM--QEHYACMIDILGRAGKFQEAMELVDTMP-FQANASVWGALLGAARIY 581 (771)
Q Consensus 507 l~a~~~~g~~~~a~~~~~~m~~~~~i~p~--~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p~~~~~~~ll~a~~~~ 581 (771)
+.-+..-++-+.|+.+|+...+. +..+ ...|..|++-=..-|.+..+..+=++|. .-|...+-..+++-+.+.
T Consensus 473 l~fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ik 548 (660)
T COG5107 473 LLFLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAIK 548 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhhh
Confidence 45555667778888888855443 2222 4567777777777777777776666652 334443333344444433
No 306
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.07 E-value=5.3 Score=39.91 Aligned_cols=50 Identities=10% Similarity=0.132 Sum_probs=28.2
Q ss_pred ChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q 046775 76 FLEEAVCFFKEMVLSGIRPNEFSLSSMINACAGSGDSLLGRKIHGYSIKL 125 (771)
Q Consensus 76 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~ 125 (771)
++++++.++..=.+.|+-||.++++.+|..+.+.++...|.++...|+..
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 44455555555555555666666666666655555555555555555444
No 307
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.77 E-value=2.6 Score=24.88 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHhcCCchhHHHHHH
Q 046775 603 STHVLLSNIYASAGMWDNVAKVRR 626 (771)
Q Consensus 603 ~~~~~l~~~y~~~g~~~~a~~~~~ 626 (771)
.+...|+.+|...|++++|..+.+
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456788999999999999988764
No 308
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=79.03 E-value=95 Score=33.12 Aligned_cols=130 Identities=5% Similarity=0.030 Sum_probs=81.8
Q ss_pred CChhhHHHHHHHHHcCCChHHHHHHHhcCCCCCcc---hHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHH
Q 046775 28 SDEFVANSLVVMYAKCGNFIDSRRLFDAIPERSVV---SWNSLFSCYVHCDFLEEAVCFFKEMVLSGIRPNEFSLSSMIN 104 (771)
Q Consensus 28 ~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~---~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 104 (771)
.|...|-.||.-|...|..++.++++++|..|-++ .|..-|++=....++.....+|.+-...... ...|..-|.
T Consensus 40 tnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~--ldLW~lYl~ 117 (660)
T COG5107 40 TNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN--LDLWMLYLE 117 (660)
T ss_pred hhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc--HhHHHHHHH
Confidence 36778999999999999999999999999887654 6888888877788899999999887765444 333433333
Q ss_pred HHhcCCCc------HHHHHHHHHHHHh-CCCCC-hhhHHHHHHHHHh---cC------ChhHHHHHHccCCC
Q 046775 105 ACAGSGDS------LLGRKIHGYSIKL-GYDSD-MFSANALVDMYAK---VG------NLEDAVAVFKDIEH 159 (771)
Q Consensus 105 ~~~~~~~~------~~a~~i~~~~~~~-g~~~~-~~~~~~Li~~y~~---~g------~~~~A~~~f~~~~~ 159 (771)
-..+.... ....+.++..+.. +++|- ...|+..+...-. .| +++..++.+.++..
T Consensus 118 YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~ 189 (660)
T COG5107 118 YIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQ 189 (660)
T ss_pred HHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHc
Confidence 33332221 1223455555542 44443 2345555443221 22 34455555655543
No 309
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=78.95 E-value=3.4 Score=26.33 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=14.6
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHH
Q 046775 431 MSDTFAGNSLVNMYAKCGSIDDAD 454 (771)
Q Consensus 431 ~~~~~~~~~Li~~y~k~g~~~~A~ 454 (771)
|.++.+++.|...|...|+.++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 445566666666666666666654
No 310
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=78.79 E-value=1.3e+02 Score=34.58 Aligned_cols=194 Identities=13% Similarity=0.108 Sum_probs=96.9
Q ss_pred CCChhhHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHH-hCCChhHHHHHHHHhHHCCCCCCcc----h-HH
Q 046775 27 DSDEFVANSLVVMYAKCGNFIDSRRLFDAIPERSVVSWNSLFSCYV-HCDFLEEAVCFFKEMVLSGIRPNEF----S-LS 100 (771)
Q Consensus 27 ~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~-~~g~~~~A~~l~~~m~~~g~~p~~~----t-~~ 100 (771)
+.+..-|..||.+-.+| ++.+.+-|.--|..+..++-.+...|. ...+++.|...+++.....-+++-. . -.
T Consensus 27 ~~~l~~Y~kLI~~ai~C--L~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ 104 (608)
T PF10345_consen 27 EEQLKQYYKLIATAIKC--LEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQF 104 (608)
T ss_pred hhhHHHHHHHHHHHHHH--HHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 34556677777765554 222222111111123445555566555 5677888888887665332222211 1 12
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHhCC----CCChhhHHHH-HHHHHhcCChhHHHHHHccCCC-------CCcccHHHH
Q 046775 101 SMINACAGSGDSLLGRKIHGYSIKLGY----DSDMFSANAL-VDMYAKVGNLEDAVAVFKDIEH-------PDIVSWNAV 168 (771)
Q Consensus 101 ~ll~~~~~~~~~~~a~~i~~~~~~~g~----~~~~~~~~~L-i~~y~~~g~~~~A~~~f~~~~~-------~~~~~~n~l 168 (771)
.+++.+.+.+... |++..+..++.-- .+-...+.-+ +..+...++...|.+.++.+.. |-+...-.+
T Consensus 105 ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l 183 (608)
T PF10345_consen 105 LLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASL 183 (608)
T ss_pred HHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHH
Confidence 2344444444333 7777777665421 1222333333 3333334788888888766543 222233333
Q ss_pred HHHH--HhCCChhHHHHHHHHHHhCCC---------CCChhhHHHHHHHhh--cCCcHHHHHHHHHHH
Q 046775 169 IAGC--VLHEHNDWALKLFQQMKSSEI---------NPNMFTYTSALKACA--GMELKELGRQLHCSL 223 (771)
Q Consensus 169 i~~~--~~~g~~~~A~~l~~~m~~~g~---------~p~~~t~~~ll~a~~--~~~~~~~a~~l~~~~ 223 (771)
+.+. .+.+..+++++.++++..... .|-..+|..++..|+ ..|+.+.+++....+
T Consensus 184 ~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 184 SEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333 244666777777776633211 234456666666554 456655665554444
No 311
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=78.76 E-value=31 Score=28.34 Aligned_cols=61 Identities=16% Similarity=0.204 Sum_probs=47.4
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 046775 442 NMYAKCGSIDDADRAFSEIPDRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVS 505 (771)
Q Consensus 442 ~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 505 (771)
..+...|++++|..+.+....||+..|-++-. .+.|...++..-+.+|..+| .|...+|..
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 34567899999999999999999999987755 46777788888888888876 566556643
No 312
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=78.59 E-value=1.9 Score=38.62 Aligned_cols=86 Identities=14% Similarity=0.149 Sum_probs=61.9
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChhH
Q 046775 101 SMINACAGSGDSLLGRKIHGYSIKLGYDSDMFSANALVDMYAKVGNLEDAVAVFKDIEHPDIVSWNAVIAGCVLHEHNDW 180 (771)
Q Consensus 101 ~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~ 180 (771)
.+++.+.+.+.+....+.++.+.+.+...+....+.|+..|++.++.++..++++.... .-...++..+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 34566666777777778888888777667788899999999999888888888874333 444566777777787877
Q ss_pred HHHHHHHHH
Q 046775 181 ALKLFQQMK 189 (771)
Q Consensus 181 A~~l~~~m~ 189 (771)
|.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 777777653
No 313
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=78.39 E-value=11 Score=34.76 Aligned_cols=46 Identities=20% Similarity=0.165 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC----chhHHHHHHHHH
Q 046775 584 VEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGM----WDNVAKVRRFMK 629 (771)
Q Consensus 584 ~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~----~~~a~~~~~~m~ 629 (771)
++.|..-++.++.++|+...++..|+|+|.+.|. -.+|...+++..
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 4557778888999999999999999999988765 234455555544
No 314
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=77.39 E-value=4.7 Score=40.66 Aligned_cols=83 Identities=16% Similarity=0.037 Sum_probs=62.3
Q ss_pred HHHhhcCCHHHHHHHHHh-CCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhH
Q 046775 544 DILGRAGKFQEAMELVDT-MPFQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNV 621 (771)
Q Consensus 544 ~~l~r~g~~~eA~~~~~~-m~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 621 (771)
.-|.+.|.++||++.+.+ |...| |++.+..-..||.+.+.+..|+.-.+.++.|+-.-..+|..-+..-.+.|+..+|
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEA 184 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 346778888888888765 45667 7777777778888888888888888888888876677777776677777777777
Q ss_pred HHHHH
Q 046775 622 AKVRR 626 (771)
Q Consensus 622 ~~~~~ 626 (771)
.+-.+
T Consensus 185 KkD~E 189 (536)
T KOG4648|consen 185 KKDCE 189 (536)
T ss_pred HHhHH
Confidence 65433
No 315
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=77.30 E-value=2.6 Score=37.73 Aligned_cols=84 Identities=11% Similarity=0.129 Sum_probs=53.7
Q ss_pred CchhhcCCCchhHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHH
Q 046775 2 LKACTSKKDLFLGLQVHGIVVFTGFDSDEFVANSLVVMYAKCGNFIDSRRLFDAIPERSVVSWNSLFSCYVHCDFLEEAV 81 (771)
Q Consensus 2 l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~A~ 81 (771)
++.+.+.+.+.........+++.+...+..+.+.|+..|++.++.+.....++.... .-...++..+.+.|.+++|.
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a~ 90 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEAV 90 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHHH
Confidence 344555566666667777777766666778888888888888777777777763322 33345666666666666666
Q ss_pred HHHHHhH
Q 046775 82 CFFKEMV 88 (771)
Q Consensus 82 ~l~~~m~ 88 (771)
-++.++.
T Consensus 91 ~Ly~~~~ 97 (143)
T PF00637_consen 91 YLYSKLG 97 (143)
T ss_dssp HHHHCCT
T ss_pred HHHHHcc
Confidence 6666543
No 316
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.44 E-value=45 Score=30.61 Aligned_cols=50 Identities=18% Similarity=0.202 Sum_probs=27.3
Q ss_pred HhcCCHHHHHHHHHhcCCCceecHHHHH-----HHHHHcCChHHHHHHHHHHhcC
Q 046775 344 GKCGHVEDAVKIFKESSAVDLVACTSMI-----TAYAQFGLGEEALKLYLEMQDR 393 (771)
Q Consensus 344 ~k~g~~~~A~~~f~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~l~~~m~~~ 393 (771)
++.+..++|..-|..+...+--+|-.|. ....+.|+...|...|.+.-..
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d 123 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD 123 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc
Confidence 3445556666666655554444444332 2345566666666666666543
No 317
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=76.18 E-value=14 Score=34.80 Aligned_cols=70 Identities=11% Similarity=0.048 Sum_probs=50.7
Q ss_pred HHHHHHHHhCCCCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CchhHHHHHHHHHhcCCchhHH
Q 046775 553 QEAMELVDTMPFQA--NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPE----KSSTHVLLSNIYASAGMWDNVA 622 (771)
Q Consensus 553 ~eA~~~~~~m~~~p--~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~----~~~~~~~l~~~y~~~g~~~~a~ 622 (771)
++|.+.|-.+.-.| +..-.-.-|..+....|.+.+...+-+++++.+. |+..+..|+.+|.+.|+.+.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 45555555553233 3344455566677788999999999999997433 5788899999999999998874
No 318
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.74 E-value=1.9 Score=43.62 Aligned_cols=87 Identities=13% Similarity=0.198 Sum_probs=61.5
Q ss_pred cCCHHHHHHHHHhC-CCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHH
Q 046775 549 AGKFQEAMELVDTM-PFQANA-SVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRR 626 (771)
Q Consensus 549 ~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 626 (771)
.|.+++|++.+.+. +..|.. .++.--.+++...+....|++-+..+++++|+.+..|-.-.......|+|++|.+.+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 34456666555544 334433 2344444555666777778888888899999888888888888888899999998888
Q ss_pred HHHhCCCcc
Q 046775 627 FMKDNKLKK 635 (771)
Q Consensus 627 ~m~~~g~~k 635 (771)
...+.+...
T Consensus 207 ~a~kld~dE 215 (377)
T KOG1308|consen 207 LACKLDYDE 215 (377)
T ss_pred HHHhccccH
Confidence 887777653
No 319
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=75.32 E-value=4.4 Score=25.42 Aligned_cols=27 Identities=30% Similarity=0.324 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046775 467 SWSAMIGGLAQHGRGKEALQMFGQMLE 493 (771)
Q Consensus 467 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 493 (771)
+|..+...|.+.|+.++|++.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666667777777777777777665
No 320
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.02 E-value=19 Score=39.53 Aligned_cols=124 Identities=15% Similarity=0.128 Sum_probs=58.8
Q ss_pred cCCHHHHHHHHHhcCCCceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHH
Q 046775 346 CGHVEDAVKIFKESSAVDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHI 425 (771)
Q Consensus 346 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~ 425 (771)
.|+++.|..++..++++ .-+.++.-+.+.|..++|+++ .+|+..- .....++|+++.|.++..+.
T Consensus 599 rrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e~ 663 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVEA 663 (794)
T ss_pred hccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHhh
Confidence 35555555554444421 223344444555555555543 2222111 11123445555555543332
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 046775 426 IKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPDRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDG 495 (771)
Q Consensus 426 ~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 495 (771)
.+..-|..|.++..+.|++..|.+.|..... |..|+-.|...|+.+....+-....+.|
T Consensus 664 ------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-----~~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 664 ------NSEVKWRQLGDAALSAGELPLASECFLRARD-----LGSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred ------cchHHHHHHHHHHhhcccchhHHHHHHhhcc-----hhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 2344455666666666666666666654432 4455555555555554444444444443
No 321
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.12 E-value=39 Score=37.19 Aligned_cols=147 Identities=16% Similarity=0.053 Sum_probs=95.2
Q ss_pred hcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHH
Q 046775 446 KCGSIDDADRAFSEIPDRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHI-TLVSVLCACNHAGLVAEAKHHFE 524 (771)
Q Consensus 446 k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~ 524 (771)
-.|+++.|..++-.++++ .-+.++.-+...|..++|++ +.||.. -|-.. .+.|+++.|.++..
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~---------~s~D~d~rFela----l~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALE---------LSTDPDQRFELA----LKLGRLDIAFDLAV 661 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhh---------cCCChhhhhhhh----hhcCcHHHHHHHHH
Confidence 457777777777766632 23455666667777777766 344443 23322 34688888877755
Q ss_pred HHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh
Q 046775 525 SMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMPFQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSST 604 (771)
Q Consensus 525 ~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 604 (771)
+.. +..-|..|.++...+|++..|.+.+.+.. -|.+|+-.+...||-+.-..++....+-.-.|..
T Consensus 662 e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~A- 727 (794)
T KOG0276|consen 662 EAN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLA- 727 (794)
T ss_pred hhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccchH-
Confidence 432 34568888888889999988888887643 3677777777777776555555555444443332
Q ss_pred HHHHHHHHHhcCCchhHHHHHH
Q 046775 605 HVLLSNIYASAGMWDNVAKVRR 626 (771)
Q Consensus 605 ~~~l~~~y~~~g~~~~a~~~~~ 626 (771)
-..|...|+++++.++..
T Consensus 728 ----F~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 728 ----FLAYFLSGDYEECLELLI 745 (794)
T ss_pred ----HHHHHHcCCHHHHHHHHH
Confidence 246777888888877654
No 322
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=73.98 E-value=1.3e+02 Score=32.13 Aligned_cols=121 Identities=11% Similarity=-0.013 Sum_probs=63.5
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHh--ccCcHHHHHHHHHHHHHhhCC-CCCcchHHHHHHHHhhcC
Q 046775 476 AQHGRGKEALQMFGQMLEDGVLPNHI--TLVSVLCACN--HAGLVAEAKHHFESMEKKFGI-QPMQEHYACMIDILGRAG 550 (771)
Q Consensus 476 ~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~~--~~g~~~~a~~~~~~m~~~~~i-~p~~~~y~~lv~~l~r~g 550 (771)
-.++++..|.++|+++... ++++.. .+..+..+|. ...+.++|.++|+........ .-...++..++..+-...
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 220 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEVLKALE 220 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHH
Confidence 3677888888888888886 666554 2333334443 355677888888876644111 011233444443333322
Q ss_pred CHHHHHHHHHhCCCCCCH-hHHHHHHHHHHh--cCCHHHHHHHHHHHHhc
Q 046775 551 KFQEAMELVDTMPFQANA-SVWGALLGAARI--YKNVEVGQHAAEMLFAI 597 (771)
Q Consensus 551 ~~~eA~~~~~~m~~~p~~-~~~~~ll~a~~~--~~~~~~a~~~~~~~~~l 597 (771)
.+..+......-+-+|.. .+..-+.+|-|+ .|+++.|..-+-+++|+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 221 SILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred hhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 222222222222212222 244445556653 57888887766666664
No 323
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=73.91 E-value=6.7 Score=25.87 Aligned_cols=28 Identities=25% Similarity=0.431 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046775 466 VSWSAMIGGLAQHGRGKEALQMFGQMLE 493 (771)
Q Consensus 466 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 493 (771)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3566777777777777777777777654
No 324
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=73.47 E-value=4.7 Score=26.67 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHhcCCchhHHHHHHHHHh
Q 046775 603 STHVLLSNIYASAGMWDNVAKVRRFMKD 630 (771)
Q Consensus 603 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 630 (771)
.++..|+++|...|++++|..+.+...+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4577899999999999999998877654
No 325
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=73.43 E-value=2.2e+02 Score=34.56 Aligned_cols=18 Identities=17% Similarity=-0.038 Sum_probs=7.9
Q ss_pred CcchHHHHHHHHhhcCCH
Q 046775 535 MQEHYACMIDILGRAGKF 552 (771)
Q Consensus 535 ~~~~y~~lv~~l~r~g~~ 552 (771)
+...-...+..|++.|.-
T Consensus 788 d~~VR~aA~~aLg~~g~~ 805 (897)
T PRK13800 788 DPLVRAAALAALAELGCP 805 (897)
T ss_pred CHHHHHHHHHHHHhcCCc
Confidence 333444444444444443
No 326
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=72.86 E-value=25 Score=28.67 Aligned_cols=62 Identities=21% Similarity=0.341 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHH
Q 046775 481 GKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMID 544 (771)
Q Consensus 481 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~ 544 (771)
.-++.+-++.+....+-|+.....+.|.||.+.+++.-|..+|+..+.+-|. +...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 4455666677777778999999999999999999999999999988755332 4456766654
No 327
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=72.70 E-value=79 Score=29.09 Aligned_cols=32 Identities=19% Similarity=0.189 Sum_probs=18.2
Q ss_pred HHHHHccCCCChhHHHHHHHhhhcCCChHHHH
Q 046775 221 CSLIKMEIKSDPIVGVGLVDMYAKCGSMDEAR 252 (771)
Q Consensus 221 ~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~ 252 (771)
..+.+.++.++..++..+++...+.|+.....
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ 49 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLIRNGQFSQLH 49 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 33445566666666666666666666554433
No 328
>PHA02875 ankyrin repeat protein; Provisional
Probab=72.62 E-value=1.5e+02 Score=32.11 Aligned_cols=19 Identities=5% Similarity=0.114 Sum_probs=9.9
Q ss_pred HHHHHhcCChhHHHHHHcc
Q 046775 138 VDMYAKVGNLEDAVAVFKD 156 (771)
Q Consensus 138 i~~y~~~g~~~~A~~~f~~ 156 (771)
+...++.|+.+.+..+++.
T Consensus 72 L~~A~~~g~~~~v~~Ll~~ 90 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLDL 90 (413)
T ss_pred HHHHHHCCCHHHHHHHHHc
Confidence 3344455666555555544
No 329
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.50 E-value=1.5e+02 Score=33.68 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc-CCchhHHHHHHHHHhCCCcc
Q 046775 582 KNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASA-GMWDNVAKVRRFMKDNKLKK 635 (771)
Q Consensus 582 ~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~-g~~~~a~~~~~~m~~~g~~k 635 (771)
.|.+.|...+.++-+.+ ++.+...++..|.-- ++++.+.-.+..+++.|.+-
T Consensus 378 r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~ 430 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEV 430 (552)
T ss_pred CCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhH
Confidence 35666777777777666 344445555444433 77777777777777766543
No 330
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=72.47 E-value=3.2e+02 Score=36.01 Aligned_cols=279 Identities=15% Similarity=0.092 Sum_probs=155.0
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHHh-cCCCceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCC-HhhHHHHHHHhhcc
Q 046775 335 IVNSLIDAYGKCGHVEDAVKIFKE-SSAVDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPD-SFVCSSLLNACANL 412 (771)
Q Consensus 335 ~~~~Li~~y~k~g~~~~A~~~f~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~ 412 (771)
.+-.+...|+.-+++|....+... ...++ ...-|.-....|++..|...|+.+.+. .|+ ..+++.++..-...
T Consensus 1422 l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~ 1496 (2382)
T KOG0890|consen 1422 LYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWADAAACYERLIQK--DPDKEKHHSGVLKSMLAI 1496 (2382)
T ss_pred HHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHHHHHHHHHHhhcC--CCccccchhhHHHhhhcc
Confidence 344455577777777776666552 22222 233455566778899999999988865 444 66777777777677
Q ss_pred cchHHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHH-HHH-HHHc--CChHHHHHH
Q 046775 413 SAYEQGKQVHVHIIKFGFMSDTFAG-NSLVNMYAKCGSIDDADRAFSEIPDRGIVSWSAM-IGG-LAQH--GRGKEALQM 487 (771)
Q Consensus 413 ~~~~~a~~i~~~~~~~g~~~~~~~~-~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~l-i~~-~~~~--g~~~~A~~l 487 (771)
+.++...-..+...... .+...-+ +.=+.+--+.++++.-..... .++..+|.+. +.. ..+. .+.-.-.++
T Consensus 1497 ~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~ 1572 (2382)
T KOG0890|consen 1497 QHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDL 1572 (2382)
T ss_pred cchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHH
Confidence 77766655444333222 2222222 222334456666666665555 5566677665 221 1111 111111123
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH----------HHHhhCCCCCcchHH---HHHHHHhhcCCHHH
Q 046775 488 FGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFES----------MEKKFGIQPMQEHYA---CMIDILGRAGKFQE 554 (771)
Q Consensus 488 ~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~----------m~~~~~i~p~~~~y~---~lv~~l~r~g~~~e 554 (771)
.+.+++. ...=+++|+..|-+..+.++.-. .....+.+|+....+ ....-+-+.+....
T Consensus 1573 i~~~r~~--------~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~ 1644 (2382)
T KOG0890|consen 1573 IENSREL--------VIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFR 1644 (2382)
T ss_pred HHHHHHH--------hhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHH
Confidence 3333332 11123444444433333332221 122224444422111 11222333333333
Q ss_pred HHHHHHhC-------CCCCC-----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHH
Q 046775 555 AMELVDTM-------PFQAN-----ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVA 622 (771)
Q Consensus 555 A~~~~~~m-------~~~p~-----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 622 (771)
+.+-|-.+ -+.|+ ..+|......+|..|.++.|..+.-++.+.. -+..++..+......|+-..|.
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al 1722 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNAL 1722 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHH
Confidence 33333222 12333 3389999999999999999999988887776 4778999999999999999999
Q ss_pred HHHHHHHhCC
Q 046775 623 KVRRFMKDNK 632 (771)
Q Consensus 623 ~~~~~m~~~g 632 (771)
.+.+.-.+..
T Consensus 1723 ~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1723 SVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHhh
Confidence 9988776543
No 331
>PRK11619 lytic murein transglycosylase; Provisional
Probab=71.51 E-value=2e+02 Score=33.23 Aligned_cols=254 Identities=8% Similarity=0.022 Sum_probs=123.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccch--
Q 046775 338 SLIDAYGKCGHVEDAVKIFKESSAVDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAY-- 415 (771)
Q Consensus 338 ~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~-- 415 (771)
.-+..+++.++++...+ |..-+..+...-.....+....|+.++|....+.+-..| ...+.....++..+.+.|.+
T Consensus 104 ~~l~~La~~~~w~~~~~-~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt~ 181 (644)
T PRK11619 104 RFVNELARREDWRGLLA-FSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQDP 181 (644)
T ss_pred HHHHHHHHccCHHHHHH-hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCCH
Confidence 33444555666666665 332223344444445556666677666666666655444 22334444555555433332
Q ss_pred ----------------HHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHH--
Q 046775 416 ----------------EQGKQVHVHIIKFGFMSD-TFAGNSLVNMYAKCGSIDDADRAFSEIPDRGIVSWSAMIGGLA-- 476 (771)
Q Consensus 416 ----------------~~a~~i~~~~~~~g~~~~-~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~-- 476 (771)
..+..+...+ +++ ......++..+.+-. .+...+.... ++...-...+.++.
T Consensus 182 ~d~w~R~~~al~~~~~~lA~~l~~~l-----~~~~~~~a~a~~al~~~p~---~~~~~~~~~~-~~~~~~~~~~~~l~Rl 252 (644)
T PRK11619 182 LAYLERIRLAMKAGNTGLVTYLAKQL-----PADYQTIASALIKLQNDPN---TVETFARTTG-PTDFTRQMAAVAFASV 252 (644)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhc-----ChhHHHHHHHHHHHHHCHH---HHHHHhhccC-CChhhHHHHHHHHHHH
Confidence 2222222221 111 223334444443322 2222222221 11111111111221
Q ss_pred HcCChHHHHHHHHHHHHC-CCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHH
Q 046775 477 QHGRGKEALQMFGQMLED-GVLPNHI--TLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQ 553 (771)
Q Consensus 477 ~~g~~~~A~~l~~~m~~~-g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~ 553 (771)
...+.+.|..++.+.... ++.+... ....+.......+..+++...++..... ..+.+...--+..-.+.++++
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~ 329 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRR 329 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHH
Confidence 234568888888887543 3333333 2223322222322256677776654322 123344444455555899999
Q ss_pred HHHHHHHhCCCC-CCHhHHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 046775 554 EAMELVDTMPFQ-ANASVWGAL-LGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLS 609 (771)
Q Consensus 554 eA~~~~~~m~~~-p~~~~~~~l-l~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 609 (771)
.+...|..||-. -+..-|.-- ..+....|+.+.|...++++-. + ...|-.|+
T Consensus 330 ~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~--~~fYG~LA 383 (644)
T PRK11619 330 GLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--Q--RGFYPMVA 383 (644)
T ss_pred HHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CCcHHHHH
Confidence 999999998721 122233333 3344557999999999888743 3 24565554
No 332
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=71.49 E-value=31 Score=28.47 Aligned_cols=61 Identities=20% Similarity=0.306 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHH
Q 046775 483 EALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDI 545 (771)
Q Consensus 483 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~ 545 (771)
+..+-++.+....+-|+.....+.|.||.+.+++.-|.++|+..+.+-| +....|..+++-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHHH
Confidence 4555566666677889999999999999999999999999999887643 344478777653
No 333
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.90 E-value=1.1e+02 Score=29.82 Aligned_cols=99 Identities=14% Similarity=0.291 Sum_probs=58.1
Q ss_pred CcHHHHHHHHHHHHHhhCCCCC-cchHHHHH---HHHhhcCCHHHHHHHHHhCC---CCCCHhHHHH---H--HHHHHhc
Q 046775 514 GLVAEAKHHFESMEKKFGIQPM-QEHYACMI---DILGRAGKFQEAMELVDTMP---FQANASVWGA---L--LGAARIY 581 (771)
Q Consensus 514 g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv---~~l~r~g~~~eA~~~~~~m~---~~p~~~~~~~---l--l~a~~~~ 581 (771)
.+.++|+.+|+..-+-|..+-. ...--|++ +.-+..|++.+|++++++.. +..+..-|+. + .+.|...
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 3455666666655544433222 22233444 34456778888999988762 4444444443 2 2456555
Q ss_pred -CCHHHHHHHHHHHHhcCCC--CchhHHHHHHHH
Q 046775 582 -KNVEVGQHAAEMLFAIEPE--KSSTHVLLSNIY 612 (771)
Q Consensus 582 -~~~~~a~~~~~~~~~l~p~--~~~~~~~l~~~y 612 (771)
.|.--+.+++++-.+++|. ++.-+-.|-.+.
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~ 241 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFTDSRECKFLKDLL 241 (288)
T ss_pred cccHHHHHHHHHHHHhcCCcccccHHHHHHHHHH
Confidence 7888889999999999996 333344444443
No 334
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=70.66 E-value=8.5 Score=22.81 Aligned_cols=28 Identities=14% Similarity=0.043 Sum_probs=13.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 046775 572 GALLGAARIYKNVEVGQHAAEMLFAIEP 599 (771)
Q Consensus 572 ~~ll~a~~~~~~~~~a~~~~~~~~~l~p 599 (771)
..+...+...++.+.|...++++++++|
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3333344444455555555555554444
No 335
>PF15161 Neuropep_like: Neuropeptide-like
Probab=70.35 E-value=1.4 Score=30.94 Aligned_cols=17 Identities=41% Similarity=0.860 Sum_probs=12.4
Q ss_pred eccccccCccchhhhhhh
Q 046775 726 KNLRICVDCHTSFEFISK 743 (771)
Q Consensus 726 kn~r~c~dch~~~k~~s~ 743 (771)
-.-|-|.|||.|- |+-+
T Consensus 11 aesRPCVDCHAFe-fmqR 27 (65)
T PF15161_consen 11 AESRPCVDCHAFE-FMQR 27 (65)
T ss_pred CCCCCchhhHHHH-HHHH
Confidence 3568999999765 5544
No 336
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=70.12 E-value=5 Score=24.86 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=23.6
Q ss_pred hHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 046775 604 THVLLSNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 604 ~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
++..++.+|...|++++|.+.++...++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4667899999999999999998887654
No 337
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=69.18 E-value=18 Score=33.34 Aligned_cols=62 Identities=19% Similarity=0.281 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCc-----------HHHHHHHHHHHHHhhCCCCCcchHHHHHHHHh
Q 046775 481 GKEALQMFGQMLEDGVLPNHI-TLVSVLCACNHAGL-----------VAEAKHHFESMEKKFGIQPMQEHYACMIDILG 547 (771)
Q Consensus 481 ~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~-----------~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~ 547 (771)
+++|+.-|++.+. +.|+.. ++..+..|+...+. +++|..+|++... .+|+.+.|..-.++..
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~---~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD---EDPNNELYRKSLEMAA 124 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH---H-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh---cCCCcHHHHHHHHHHH
Confidence 4566666777777 788864 77777777765443 3445555555443 4788777776666553
No 338
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=68.95 E-value=7.7 Score=41.20 Aligned_cols=127 Identities=13% Similarity=0.173 Sum_probs=73.6
Q ss_pred cchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-------------ChhHHHHHHHHH----
Q 046775 413 SAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPDR-------------GIVSWSAMIGGL---- 475 (771)
Q Consensus 413 ~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~-------------~~~~~~~li~~~---- 475 (771)
+.+++-.++++.+.+.| .+| +...-||.|.+.+++++|..-+++-.+. ++..-..++.+.
T Consensus 68 ~~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~Pv 144 (480)
T TIGR01503 68 ALLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPL 144 (480)
T ss_pred CcHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCe
Confidence 44666667777777665 222 4566788888889998888888755421 122333344432
Q ss_pred -HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH---HHHHhh---CCCCCcchHHHHH
Q 046775 476 -AQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFE---SMEKKF---GIQPMQEHYACMI 543 (771)
Q Consensus 476 -~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~---~m~~~~---~i~p~~~~y~~lv 543 (771)
.+||. ..|..+++-+...|+.-..--..+.---|++.=-+++++..|+ ++...| |+..+.+.|.+|-
T Consensus 145 QvRHGt-pDarlL~e~~~a~G~~a~EGG~ISYnlPYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpLt 218 (480)
T TIGR01503 145 QIRHGT-PDARLLAEIILAGGFTSFEGGGISYNIPYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPLT 218 (480)
T ss_pred eccCCC-CcHHHHHHHHHHcCCCccCCCcceeccccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCCC
Confidence 34453 4577788888888776543222222223444445566655554 333333 7777777777653
No 339
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=68.87 E-value=45 Score=27.43 Aligned_cols=63 Identities=13% Similarity=0.125 Sum_probs=45.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHH
Q 046775 338 SLIDAYGKCGHVEDAVKIFKESSAVDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCS 403 (771)
Q Consensus 338 ~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 403 (771)
.-+..+...|++++|..+.+...-||...|-++-. .+.|..+++..-+.+|..+| .|...+|.
T Consensus 44 IRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 44 IRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 33455677889999999988888899998877754 46677777777777777665 45554444
No 340
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.86 E-value=97 Score=28.56 Aligned_cols=119 Identities=17% Similarity=0.139 Sum_probs=79.3
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHH-----HHHHhh
Q 046775 475 LAQHGRGKEALQMFGQMLEDGVLPNHI-TLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACM-----IDILGR 548 (771)
Q Consensus 475 ~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~l-----v~~l~r 548 (771)
+++.|..++|+.-|.++.+.|...=.+ ............|+..+|...|+.+..+ .|.+....-+ .-+|..
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHHHhc
Confidence 467788888888888888876543322 2333344566788888999999888765 3333322222 235677
Q ss_pred cCCHHHHHHHHHhCCCCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046775 549 AGKFQEAMELVDTMPFQAN---ASVWGALLGAARIYKNVEVGQHAAEMLFA 596 (771)
Q Consensus 549 ~g~~~eA~~~~~~m~~~p~---~~~~~~ll~a~~~~~~~~~a~~~~~~~~~ 596 (771)
.|.+++....++-+..+-+ ...-.+|.-+-.+.|++..|...++.+..
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 8888888877776643222 33455666677888999999888888776
No 341
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.68 E-value=1.3e+02 Score=29.81 Aligned_cols=247 Identities=16% Similarity=0.189 Sum_probs=143.2
Q ss_pred cCCCchHHHhHHHHHH-HhcCCHHHHHHHHHhcCC----Cc---eecHHHHHHHHHHcCChHHHHHHHHHHhc---CCC-
Q 046775 328 AFESDDYIVNSLIDAY-GKCGHVEDAVKIFKESSA----VD---LVACTSMITAYAQFGLGEEALKLYLEMQD---REI- 395 (771)
Q Consensus 328 g~~~~~~~~~~Li~~y-~k~g~~~~A~~~f~~~~~----~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~- 395 (771)
+-+||+..-|..-+.- .+..++++|..-|++..+ +. -.+...||..+.+.+++++.++.|.+|.. ..+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 3355555444332222 234567888888876543 22 22344578889999999999999988864 112
Q ss_pred -CCCHhhHHHHHHHhhcccchHHHHHHHHHHHHh-----CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--------
Q 046775 396 -NPDSFVCSSLLNACANLSAYEQGKQVHVHIIKF-----GFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIP-------- 461 (771)
Q Consensus 396 -~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-----g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~-------- 461 (771)
.-+..+.++++.-.+...+.+.-..+++--.+. +-..--.+-+.|...|...|.+..-.+++.++.
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 224556778887776666665555554432211 111122233557777777777777777776654
Q ss_pred C----CC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-----ccCcHHHHHHHHHHHHHh
Q 046775 462 D----RG---IVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACN-----HAGLVAEAKHHFESMEKK 529 (771)
Q Consensus 462 ~----~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~-----~~g~~~~a~~~~~~m~~~ 529 (771)
+ ++ ...|..=|..|....+-.+--.++++.+.-.-..-+....+++.-|. +.|.+++|..-|-..-+.
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 1 11 23566667788888887777888887765322222334556777774 568888887655555555
Q ss_pred hCCCCCcc-----hHHHHHHHHhhcCC----HHHHHHHHHhCCCC--CCHhHHHHHHHHHHh
Q 046775 530 FGIQPMQE-----HYACMIDILGRAGK----FQEAMELVDTMPFQ--ANASVWGALLGAARI 580 (771)
Q Consensus 530 ~~i~p~~~-----~y~~lv~~l~r~g~----~~eA~~~~~~m~~~--p~~~~~~~ll~a~~~ 580 (771)
|.-.-++. -|-.+..+|.++|- -.|| -|++ |.......|+.|+..
T Consensus 261 YDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEA------KPyKNdPEIlAMTnlv~aYQ~ 316 (440)
T KOG1464|consen 261 YDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEA------KPYKNDPEILAMTNLVAAYQN 316 (440)
T ss_pred ccccCCcchhHHHHHHHHHHHHHHcCCCCCccccc------CCCCCCHHHHHHHHHHHHHhc
Confidence 54332222 25556677776662 1121 1433 444566677777654
No 342
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=68.14 E-value=1.4e+02 Score=30.20 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=13.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHH
Q 046775 468 WSAMIGGLAQHGRGKEALQMFGQM 491 (771)
Q Consensus 468 ~~~li~~~~~~g~~~~A~~l~~~m 491 (771)
||. ...+.+.+++.+|.+.|+-.
T Consensus 250 W~~-~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 250 WNK-GKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHH-HHHHHhhcCHHHHHHHHHHH
Confidence 444 23344567777887777643
No 343
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=67.60 E-value=25 Score=30.72 Aligned_cols=28 Identities=14% Similarity=0.137 Sum_probs=16.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 046775 576 GAARIYKNVEVGQHAAEMLFAIEPEKSS 603 (771)
Q Consensus 576 ~a~~~~~~~~~a~~~~~~~~~l~p~~~~ 603 (771)
-+|.+.|+++.+.+..+.+++.+|+|..
T Consensus 79 vg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 79 VGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred HHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 3555555666666666666666665444
No 344
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=66.85 E-value=13 Score=39.69 Aligned_cols=83 Identities=13% Similarity=0.059 Sum_probs=63.4
Q ss_pred HhhcCCHHHHHHHHHhC-CCCCCHhHHHHHH-HHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHH
Q 046775 546 LGRAGKFQEAMELVDTM-PFQANASVWGALL-GAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAK 623 (771)
Q Consensus 546 l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll-~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 623 (771)
+...+.++.|..++.+. .++||..++-+.= .+..+.+++..|..-+.++++++|.....|+.-+..+.+.|+..+|..
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~ 93 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALL 93 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHH
Confidence 34556666666666655 4678766544443 567778889999999999999999999999999999999999888888
Q ss_pred HHHHH
Q 046775 624 VRRFM 628 (771)
Q Consensus 624 ~~~~m 628 (771)
.++.-
T Consensus 94 ~l~~~ 98 (476)
T KOG0376|consen 94 DLEKV 98 (476)
T ss_pred HHHHh
Confidence 77643
No 345
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=66.44 E-value=11 Score=22.13 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHh
Q 046775 437 GNSLVNMYAKCGSIDDADRAFS 458 (771)
Q Consensus 437 ~~~Li~~y~k~g~~~~A~~~f~ 458 (771)
...|...+...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3445566666666666666654
No 346
>PHA02875 ankyrin repeat protein; Provisional
Probab=65.78 E-value=1.1e+02 Score=33.05 Aligned_cols=131 Identities=11% Similarity=0.027 Sum_probs=59.6
Q ss_pred HHHHHhCCCCChhh--HHHHHHHHHcCCChHHHHHHHhcCCCCCcc--hHHHHHHHHHhCCChhHHHHHHHHhHHCCCCC
Q 046775 19 GIVVFTGFDSDEFV--ANSLVVMYAKCGNFIDSRRLFDAIPERSVV--SWNSLFSCYVHCDFLEEAVCFFKEMVLSGIRP 94 (771)
Q Consensus 19 ~~~~~~g~~~~~~~--~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~--~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p 94 (771)
..+++.|..++... ..+.+...++.|+.+-+..+++.-..++.. ...+.+...+..|+.+.+..+++ .|...
T Consensus 19 ~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~~~~~ 94 (413)
T PHA02875 19 RRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD----LGKFA 94 (413)
T ss_pred HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH----cCCcc
Confidence 34466677665432 344555666777777666666543333221 11123334445666555444443 23211
Q ss_pred Ccc---hHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCCChhh--HHHHHHHHHhcCChhHHHHHHccC
Q 046775 95 NEF---SLSSMINACAGSGDSLLGRKIHGYSIKLGYDSDMFS--ANALVDMYAKVGNLEDAVAVFKDI 157 (771)
Q Consensus 95 ~~~---t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~--~~~Li~~y~~~g~~~~A~~~f~~~ 157 (771)
+.. .-.+.+...+..|+. ++.+.+++.|..++... ....+...+..|+.+-+..+++.-
T Consensus 95 ~~~~~~~g~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g 158 (413)
T PHA02875 95 DDVFYKDGMTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHK 158 (413)
T ss_pred cccccCCCCCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 110 011222333334443 34445555565544321 123344445566666655555443
No 347
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.44 E-value=1.2e+02 Score=28.52 Aligned_cols=112 Identities=13% Similarity=0.124 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHH-----HHHHhhcCCHHHH
Q 046775 483 EALQMFGQMLEDGVLPNHITLV--SVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACM-----IDILGRAGKFQEA 555 (771)
Q Consensus 483 ~A~~l~~~m~~~g~~pd~~t~~--~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~l-----v~~l~r~g~~~eA 555 (771)
+.....+++....-+....++. .+..+....|++++|...++.... .|.-+.+..+ ..++...|.+|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 5566666666642222222333 334467788999999988887653 2444445444 4567889999999
Q ss_pred HHHHHhCCCCCCHhHHHHH-----HHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 046775 556 MELVDTMPFQANASVWGAL-----LGAARIYKNVEVGQHAAEMLFAIEPEKS 602 (771)
Q Consensus 556 ~~~~~~m~~~p~~~~~~~l-----l~a~~~~~~~~~a~~~~~~~~~l~p~~~ 602 (771)
+..++... .+ .|.++ ..++...||-+.|+..+++.++.+++++
T Consensus 146 L~~L~t~~-~~---~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 146 LKTLDTIK-EE---SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHhccc-cc---cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 99998654 23 23332 3467788999999999999999886443
No 348
>PF15469 Sec5: Exocyst complex component Sec5
Probab=65.32 E-value=1e+02 Score=28.86 Aligned_cols=115 Identities=14% Similarity=0.198 Sum_probs=57.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC-CcchHHHHHHHHhhc
Q 046775 471 MIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQP-MQEHYACMIDILGRA 549 (771)
Q Consensus 471 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~ 549 (771)
++..-.+......++.++++..-- ...-.-|.-|...|+++.+...|.+....++-.. ....+..
T Consensus 63 ll~~~~k~~~l~~~l~~l~r~~fl------F~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~-------- 128 (182)
T PF15469_consen 63 LLERREKADKLRNALEFLQRNRFL------FNLPSNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQK-------- 128 (182)
T ss_pred HHccHHHHHHHHHHHHHHHHHHHH------HHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHH--------
Confidence 333333334444555555544331 1223456667777888888777777765543222 1111111
Q ss_pred CCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 046775 550 GKFQEAMELVDTMPFQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVL 607 (771)
Q Consensus 550 g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~ 607 (771)
-+.+....++... ..+|..|.... .+.+........+++|+|++...+..
T Consensus 129 -v~~eve~ii~~~r----~~l~~~L~~~~---~s~~~~~~~i~~Ll~L~~~~dPi~~~ 178 (182)
T PF15469_consen 129 -VWSEVEKIIEEFR----EKLWEKLLSPP---SSQEEFLKLIRKLLELNVEEDPIWYW 178 (182)
T ss_pred -HHHHHHHHHHHHH----HHHHHHHhCCC---CCHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 1233333333321 12333333222 55677778888888888865555443
No 349
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=64.96 E-value=2.2e+02 Score=31.16 Aligned_cols=192 Identities=7% Similarity=-0.002 Sum_probs=0.0
Q ss_pred HHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCChhHHHHHHHHHHHcCChHHH
Q 046775 407 NACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIP--DRGIVSWSAMIGGLAQHGRGKEA 484 (771)
Q Consensus 407 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A 484 (771)
...+...+---|.-+-+.+.-..-+.|....-++++.++..-...-.+.+-.+|. ..+-..+-.++..|.++ ..++-
T Consensus 39 ~hl~~~k~si~~lyisg~~~~s~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l 117 (711)
T COG1747 39 EHLAHSKNSIIALYISGIISLSKQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQL 117 (711)
T ss_pred HHHHHhhhhhHHHHHHHHHHhhhccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-Cchhh
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhh--cCCHHHHHHHHHhC
Q 046775 485 LQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGR--AGKFQEAMELVDTM 562 (771)
Q Consensus 485 ~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r--~g~~~eA~~~~~~m 562 (771)
..+|+++.+ ..-|.+.+.-.|.-+...++.+.+..+|.+....+=-+.......-+-.-+-. ..+.|.-+.++.+.
T Consensus 118 ~~lWer~ve--~dfnDvv~~ReLa~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~ki 195 (711)
T COG1747 118 YSLWERLVE--YDFNDVVIGRELADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKI 195 (711)
T ss_pred HHHHHHHHH--hcchhHHHHHHHHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHH
Q ss_pred C----CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 046775 563 P----FQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEK 601 (771)
Q Consensus 563 ~----~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 601 (771)
. .....+.+.-+-.-|....|..+|.++...+++.+..|
T Consensus 196 qt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~ 238 (711)
T COG1747 196 QTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKD 238 (711)
T ss_pred HHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchh
No 350
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=64.88 E-value=1.8e+02 Score=30.22 Aligned_cols=191 Identities=15% Similarity=0.133 Sum_probs=100.5
Q ss_pred HHhHHHHHHHhcCCHHHHHHHH-------HhcCC--CceecHHHHHHHHHHcCChHHHHHHHHHHhc-CCCCCCH---hh
Q 046775 335 IVNSLIDAYGKCGHVEDAVKIF-------KESSA--VDLVACTSMITAYAQFGLGEEALKLYLEMQD-REINPDS---FV 401 (771)
Q Consensus 335 ~~~~Li~~y~k~g~~~~A~~~f-------~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~---~t 401 (771)
++..+.++.++.|.++++...- .+..+ .-..+|-.+..++-+.-++.+++.+-..-.. .|..|.. ..
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 3444555556666655554321 11111 1123344455555555555555554433222 2333311 22
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHHHhC-----CCCchhHHHHHHHHHHhcCCHHHHHHHHhh-------CCCCChh---
Q 046775 402 CSSLLNACANLSAYEQGKQVHVHIIKFG-----FMSDTFAGNSLVNMYAKCGSIDDADRAFSE-------IPDRGIV--- 466 (771)
Q Consensus 402 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g-----~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~-------~~~~~~~--- 466 (771)
..++-.+...++.++++.+.|+.+.+.. -.....++-+|...|++..++++|.-+... ..-.|+.
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 3345667777778888888887765531 122456788888889888888876544332 2223321
Q ss_pred ---HHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHH
Q 046775 467 ---SWSAMIGGLAQHGRGKEALQMFGQMLE----DGVLPNHI-TLVSVLCACNHAGLVAEAKHHFES 525 (771)
Q Consensus 467 ---~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~ 525 (771)
+.-.|..++...|....|.+.-++..+ .|-.|-.. ....+..-|...|+.|.|+.-|++
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 223355667777777777777666543 33222221 233444456666666666655544
No 351
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=64.17 E-value=50 Score=29.50 Aligned_cols=78 Identities=14% Similarity=0.158 Sum_probs=47.4
Q ss_pred hHHHHHHHHHcCCChHHHHHHHhcCCC---------CCcchHHHHHHHHHhCCC-hhHHHHHHHHhHHCCCCCCcchHHH
Q 046775 32 VANSLVVMYAKCGNFIDSRRLFDAIPE---------RSVVSWNSLFSCYVHCDF-LEEAVCFFKEMVLSGIRPNEFSLSS 101 (771)
Q Consensus 32 ~~~~ll~~y~~~g~~~~A~~~f~~~~~---------~~~~~~n~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ 101 (771)
..|+++.-.+..+++.....+++.++. .+-.+|..++.+.++... ---+..+|..|.+.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 356666655556666666666555532 344567777777755554 3345666777776666677777777
Q ss_pred HHHHHhcC
Q 046775 102 MINACAGS 109 (771)
Q Consensus 102 ll~~~~~~ 109 (771)
++++|.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 77766543
No 352
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=63.51 E-value=47 Score=31.41 Aligned_cols=73 Identities=16% Similarity=0.144 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHh---CCCCchhHHHHHHHHHHhcCCHHHHH
Q 046775 381 EEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKF---GFMSDTFAGNSLVNMYAKCGSIDDAD 454 (771)
Q Consensus 381 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~---g~~~~~~~~~~Li~~y~k~g~~~~A~ 454 (771)
++|++.|-++...+.- +.......|..+-...+.+++++++-.+... +-.+|+.++.+|+..|-+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l-~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPEL-ETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 5677777777766544 3334444444444466777777777766543 23567888888888888888888774
No 353
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=63.30 E-value=13 Score=22.83 Aligned_cols=28 Identities=11% Similarity=0.019 Sum_probs=21.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 046775 574 LLGAARIYKNVEVGQHAAEMLFAIEPEK 601 (771)
Q Consensus 574 ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 601 (771)
+..++...|+.+.|...++++++..|++
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 4455667788888888888888888853
No 354
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.88 E-value=1.6e+02 Score=28.89 Aligned_cols=66 Identities=21% Similarity=0.207 Sum_probs=38.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHh---CC--CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 046775 539 YACMIDILGRAGKFQEAMELVDT---MP--FQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIY 612 (771)
Q Consensus 539 y~~lv~~l~r~g~~~eA~~~~~~---m~--~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 612 (771)
|-..|-++.-+.++..|...++. .| ..| +..+...||.++ ..||.|....++ ++++.-.+=|.|
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl---------~sp~~r~MDney 262 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL---------SSPTVRNMDNEY 262 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH---------cChHhhhhhHHH
Confidence 33344445556677888888877 33 233 344777777775 456777666654 344444555555
Q ss_pred Hh
Q 046775 613 AS 614 (771)
Q Consensus 613 ~~ 614 (771)
+.
T Consensus 263 a~ 264 (308)
T KOG1585|consen 263 AH 264 (308)
T ss_pred HH
Confidence 54
No 355
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=62.18 E-value=87 Score=34.47 Aligned_cols=57 Identities=19% Similarity=0.259 Sum_probs=35.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCC--Chh---HHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 046775 438 NSLVNMYAKCGSIDDADRAFSEIPDR--GIV---SWSAMIGGLAQHGRGKEALQMFGQMLED 494 (771)
Q Consensus 438 ~~Li~~y~k~g~~~~A~~~f~~~~~~--~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~ 494 (771)
..|+.-|.+++++++|..++..|.-. +.. +.+.+.+.+.+..-..+....++.++..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 45778899999999999999999722 223 3333444444444445555555555543
No 356
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.07 E-value=2.2e+02 Score=30.18 Aligned_cols=59 Identities=24% Similarity=0.254 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046775 435 FAGNSLVNMYAKCGSIDDADRAFSEIPD-----RG-IVSWSAMIGGLAQHGRGKEALQMFGQMLE 493 (771)
Q Consensus 435 ~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 493 (771)
....-|.+.|..||+++.|.+.|.+..+ +. +..|-.+|..-.-.|++.....+-.+..+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 4566788999999999999999998541 11 33555566555566777777766666655
No 357
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=61.97 E-value=32 Score=36.64 Aligned_cols=121 Identities=21% Similarity=0.281 Sum_probs=71.5
Q ss_pred cCChHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHH
Q 046775 478 HGRGKEA-LQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAM 556 (771)
Q Consensus 478 ~g~~~~A-~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~ 556 (771)
.|+...| .++|.-+....-.|+.+-+.+++ .++.|.++.+.+.+....+ -+-....+..|++.-+...|++++|+
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHH
Confidence 3444443 34455555544456666555444 4567778877777666543 23444566777777777888888888
Q ss_pred HHHHhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 046775 557 ELVDTMP--FQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKS 602 (771)
Q Consensus 557 ~~~~~m~--~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~ 602 (771)
.+-.-|- --.+..+...-.+..+..|-++++....++++.++|...
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 7776662 111222233333444556667777777788888776533
No 358
>PF13934 ELYS: Nuclear pore complex assembly
Probab=61.33 E-value=63 Score=31.57 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=12.0
Q ss_pred HHHHHHHcCChHHHHHHHHHH
Q 046775 471 MIGGLAQHGRGKEALQMFGQM 491 (771)
Q Consensus 471 li~~~~~~g~~~~A~~l~~~m 491 (771)
++.++...|+.+.|+.+++.+
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~ 134 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAV 134 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhc
Confidence 455555556666666665553
No 359
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=60.82 E-value=28 Score=33.13 Aligned_cols=65 Identities=14% Similarity=0.085 Sum_probs=44.4
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh
Q 046775 540 ACMIDILGRAGKFQEAMELVDTM-PFQAN-ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSST 604 (771)
Q Consensus 540 ~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 604 (771)
...+.-|.+.+++.+|+...+.- .-+|. ...-..|..-+...|+.++|..-++-+-+++|++..-
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~ 71 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVG 71 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchH
Confidence 33456677888888888766543 34553 3455566677778888888888888888888866543
No 360
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=60.46 E-value=3.8e+02 Score=32.53 Aligned_cols=254 Identities=9% Similarity=-0.035 Sum_probs=134.2
Q ss_pred HHhhhCCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCChhHHHHHHHHHHHhcCCCc
Q 046775 253 MIFHLMPEKNLIAWNIVISGHLQNGGDMEAASLFPWMYREGVGFDQTTLSTVLKSVASFQAIGVCKQVHALSVKTAFESD 332 (771)
Q Consensus 253 ~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~ 332 (771)
.+...+..+|...--..+..+.+.+. +++...+..... .+|...-...+.++...+........+...++ .+|
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SPD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CCC
Confidence 34444445666555555666665554 334444444443 23433334444444443221111122222222 255
Q ss_pred hHHHhHHHHHHHhcCCHHHHHHHHHhcCCCceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcc
Q 046775 333 DYIVNSLIDAYGKCGHVEDAVKIFKESSAVDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANL 412 (771)
Q Consensus 333 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 412 (771)
..+-.+.++.+...+.-+ ...+...+..+|...-...+.++.+.+..+. +.... -.++...-.....+....
T Consensus 698 ~~VR~~A~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~ 769 (897)
T PRK13800 698 PVVRAAALDVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATL 769 (897)
T ss_pred HHHHHHHHHHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHh
Confidence 666666666665543211 2234455566666555555666665544332 12222 245555555666666666
Q ss_pred cchHH-HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH-HHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 046775 413 SAYEQ-GKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDAD-RAFSEIPDRGIVSWSAMIGGLAQHGRGKEALQMFGQ 490 (771)
Q Consensus 413 ~~~~~-a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~-~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 490 (771)
+..+. +...+..+.+ .+|..+-.+.+..+++.|..+.+. .+...+..+|...-...+.++...+. +++...+..
T Consensus 770 ~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~ 845 (897)
T PRK13800 770 GAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVE 845 (897)
T ss_pred ccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHH
Confidence 54332 2233333333 456778888888888888766543 34445556665555556677777664 567777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 046775 491 MLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEK 528 (771)
Q Consensus 491 m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 528 (771)
+.. .||...-...+.++...+.-.++...+....+
T Consensus 846 ~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 846 ALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred Hhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 765 46666666667777665334456666666554
No 361
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=60.25 E-value=20 Score=29.02 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 046775 589 HAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 589 ~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
..+++.++.+|+|...-..|+..|...|++++|.+..-.+..+
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4556666777777777777777777777777777765555433
No 362
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=59.41 E-value=3.5e+02 Score=31.80 Aligned_cols=184 Identities=16% Similarity=0.139 Sum_probs=98.8
Q ss_pred HhcCCHHHHHHHHhhCC----CCC-------hhHHHHHHHHH-HHcCChHHHHHHHHHHHHCCCC-----CCHHHHHHHH
Q 046775 445 AKCGSIDDADRAFSEIP----DRG-------IVSWSAMIGGL-AQHGRGKEALQMFGQMLEDGVL-----PNHITLVSVL 507 (771)
Q Consensus 445 ~k~g~~~~A~~~f~~~~----~~~-------~~~~~~li~~~-~~~g~~~~A~~l~~~m~~~g~~-----pd~~t~~~ll 507 (771)
....++++|..+..+.. .++ ...|+++-.-. ...|++++|+++.+..... +. +..+.+..+.
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~-L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQ-LPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-cccccchhhhhhhhhhh
Confidence 34567777776665432 332 13677664433 3457778888888877664 22 2334455555
Q ss_pred HHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHH-----HHhhcCCHHHHHH--HH---HhC--CCCCC----HhHH
Q 046775 508 CACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMID-----ILGRAGKFQEAME--LV---DTM--PFQAN----ASVW 571 (771)
Q Consensus 508 ~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~-----~l~r~g~~~eA~~--~~---~~m--~~~p~----~~~~ 571 (771)
.+..-.|++++|..+..+..+. .-.-+..+|...+. .+-..|+...|.. .+ +.- +-+|- ..+.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 6666678888888776655432 22234444444332 3455663322222 22 221 12222 1233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc----CCC--Cc-hhHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 046775 572 GALLGAARIYKNVEVGQHAAEMLFAI----EPE--KS-STHVLLSNIYASAGMWDNVAKVRRFMKDNKL 633 (771)
Q Consensus 572 ~~ll~a~~~~~~~~~a~~~~~~~~~l----~p~--~~-~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 633 (771)
..++.+. -+.+.++..+.+.+++ -|. ++ ..+..|+.++...|+.++|......+.....
T Consensus 584 ~~ll~~~---~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 584 AQLLRAW---LRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred HHHHHHH---HHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 3333333 3355566555555553 222 22 1233788888889999998888777766543
No 363
>PF13934 ELYS: Nuclear pore complex assembly
Probab=59.29 E-value=86 Score=30.61 Aligned_cols=118 Identities=17% Similarity=0.169 Sum_probs=71.2
Q ss_pred HHHHHHHH--HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHH
Q 046775 468 WSAMIGGL--AQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDI 545 (771)
Q Consensus 468 ~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~ 545 (771)
+...+.|+ ..++++++|++++-.- .+.|+... -++.++...|+.+.|..+++.+.- .-.+.+.-..+..+
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFPD--KILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccHH--HHHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH
Confidence 44455554 4567788888877322 23344332 366677778999999999887631 11122223333444
Q ss_pred HhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 046775 546 LGRAGKFQEAMELVDTMPFQANASVWGALLGAARIYKNVEVGQHAAEMLFAI 597 (771)
Q Consensus 546 l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l 597 (771)
...|.+.||..+.+..+-+-....|..++..|..+.. . ...++.++++
T Consensus 151 -La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~~--~-~~~~~~Ll~L 198 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEECA--R-SGRLDELLSL 198 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHhh--h-hhHHHHHHhC
Confidence 4568999999999988643234578888888776553 1 2224555554
No 364
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=59.20 E-value=17 Score=28.39 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=25.9
Q ss_pred ccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHH
Q 046775 512 HAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAMEL 558 (771)
Q Consensus 512 ~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~ 558 (771)
+....++|+..|.+..++..-.|+ -...++++.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666665554322222 23456666666666666666554
No 365
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.89 E-value=3.4e+02 Score=31.40 Aligned_cols=75 Identities=8% Similarity=0.088 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhc
Q 046775 132 FSANALVDMYAKVGNLEDAVAVFKDIEHPDIVSWNAVIAGCVLHEHNDWALKLFQQMKSSEINPNMFTYTSALKACAG 209 (771)
Q Consensus 132 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 209 (771)
.++...|+-+.-.|++++|-...-.|-..+..-|---+.-++..++......+ +.....+.+...|..+|..+..
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 45666777777778888887777777777777777777766666655443332 2222222344456666655544
No 366
>PRK13342 recombination factor protein RarA; Reviewed
Probab=58.83 E-value=2.7e+02 Score=30.18 Aligned_cols=116 Identities=8% Similarity=-0.098 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHh---CCC-CCChhhHHHHHHHhhcCCcHHHHHHHHHHHHHccCCCChhHHHHHHHhhhcCCChHHHHHH
Q 046775 179 DWALKLFQQMKS---SEI-NPNMFTYTSALKACAGMELKELGRQLHCSLIKMEIKSDPIVGVGLVDMYAKCGSMDEARMI 254 (771)
Q Consensus 179 ~~A~~l~~~m~~---~g~-~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 254 (771)
++...++..... .|+ ..+......++..+ .|+...+..+.+.+...+... ..+....+
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~I----------------t~~~v~~~ 215 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSI----------------TLELLEEA 215 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCC----------------CHHHHHHH
Confidence 444445544432 133 44444455554443 678877777777665432111 12222222
Q ss_pred hhhC---CCCCeehHHHHHHHHHh---CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccC
Q 046775 255 FHLM---PEKNLIAWNIVISGHLQ---NGGDMEAASLFPWMYREGVGFDQTTLSTVLKSVASFQ 312 (771)
Q Consensus 255 f~~m---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~ 312 (771)
+... ..++...+..+++++.+ .++++.|+..+.+|.+.|..|....-..+..++-..|
T Consensus 216 ~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 216 LQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 2221 12333445666666665 4789999999999999998888666666665554443
No 367
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=58.11 E-value=1.5e+02 Score=29.07 Aligned_cols=53 Identities=4% Similarity=-0.180 Sum_probs=42.3
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 046775 579 RIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 579 ~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
.+.|++-.++.-...++..+|.|..+|..-+.+.+..=+..+|..-+....+.
T Consensus 241 L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 241 LKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred hhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 35678888899999999999999999999998888776666776666655443
No 368
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=55.86 E-value=22 Score=20.80 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046775 467 SWSAMIGGLAQHGRGKEALQMFGQMLE 493 (771)
Q Consensus 467 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 493 (771)
.|..+...|...|++++|...|++.++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 345555556666666666666665554
No 369
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.53 E-value=3.5e+02 Score=30.60 Aligned_cols=86 Identities=24% Similarity=0.191 Sum_probs=38.7
Q ss_pred HHhcCCHHHHHHHHHhcCC--------CceecHHHHHHHHHHcC-----ChHHHHHHHHHHhcCCCCCCHhhHHHHHHHh
Q 046775 343 YGKCGHVEDAVKIFKESSA--------VDLVACTSMITAYAQFG-----LGEEALKLYLEMQDREINPDSFVCSSLLNAC 409 (771)
Q Consensus 343 y~k~g~~~~A~~~f~~~~~--------~~~~~~~~li~~~~~~g-----~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 409 (771)
++...+.+.|...|+..-+ -+..+.+-+-..|.+.. +.+.|+.+|.+.-+.| .|+...+...+.-.
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~ 337 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYET 337 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHc
Confidence 3455566666666654422 13334444555555432 3344555555555444 33333333222222
Q ss_pred hc-ccchHHHHHHHHHHHHhC
Q 046775 410 AN-LSAYEQGKQVHVHIIKFG 429 (771)
Q Consensus 410 ~~-~~~~~~a~~i~~~~~~~g 429 (771)
.. ..+...|.+++..+.+.|
T Consensus 338 g~~~~d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 338 GTKERDYRRAFEYYSLAAKAG 358 (552)
T ss_pred CCccccHHHHHHHHHHHHHcC
Confidence 22 123445555555555544
No 370
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=54.88 E-value=1.3e+02 Score=25.28 Aligned_cols=87 Identities=9% Similarity=0.075 Sum_probs=51.0
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046775 414 AYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPDRGIVSWSAMIGGLAQHGRGKEALQMFGQMLE 493 (771)
Q Consensus 414 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 493 (771)
..++|..|.+.+...+- ....+.-.-+..+...|++++|...=.....||+.+|-++-. .+.|..+++...+.++-.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 35666666666666552 222233333445667888888865555666888888876654 477888888888887776
Q ss_pred CCCCCCHHHHH
Q 046775 494 DGVLPNHITLV 504 (771)
Q Consensus 494 ~g~~pd~~t~~ 504 (771)
+| .|....|.
T Consensus 98 ~g-~~~~q~Fa 107 (116)
T PF09477_consen 98 SG-SPELQAFA 107 (116)
T ss_dssp -S-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 44444443
No 371
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=54.86 E-value=23 Score=29.28 Aligned_cols=59 Identities=19% Similarity=0.171 Sum_probs=49.9
Q ss_pred hhhhccccHHHHHHcccccCCCCCeEEEeeccccccCccchhhhhhhhhcceEEEecCC
Q 046775 697 EQLLYHHSEKLAVAFGLIATPPGATIRVKKNLRICVDCHTSFEFISKIVSREIIVRDVN 755 (771)
Q Consensus 697 ~~~~~~hse~la~~~~~~~~~~~~~~~~~kn~r~c~dch~~~k~~s~~~~r~i~~rd~~ 755 (771)
++.|.-|.|.-++--=-.+-.+|..+-|.--++-|..|-.+|.-.|.-+|-.|+-++.+
T Consensus 44 ~~slaTHTE~ri~~~l~~~~~~Gd~m~I~G~ypPC~~CkG~Mr~~s~~~g~~I~Y~w~~ 102 (118)
T PF14427_consen 44 ESSLATHTEARITRDLPLNQVPGDRMLIDGQYPPCNSCKGKMRRASEKSGATIQYTWPN 102 (118)
T ss_pred hhhhhhhhHhHHHhhcCccccCCceEEEeeecCCCchhHHHHHHhhhccCcEEEEecCC
Confidence 35578899988876555555569999999999999999999999999999999998854
No 372
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=53.94 E-value=4e+02 Score=30.67 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=15.4
Q ss_pred HHHHHHHhcCCchhHHHHHHHHH
Q 046775 607 LLSNIYASAGMWDNVAKVRRFMK 629 (771)
Q Consensus 607 ~l~~~y~~~g~~~~a~~~~~~m~ 629 (771)
.+.+.|...|+.++|...+....
T Consensus 582 ~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 582 MLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHH
Confidence 44556777788888777776543
No 373
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=52.20 E-value=67 Score=27.10 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=25.2
Q ss_pred ecHHHHHHHHHHcCChHHHHHHHHHHhc
Q 046775 365 VACTSMITAYAQFGLGEEALKLYLEMQD 392 (771)
Q Consensus 365 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 392 (771)
.-|..++.-|...|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4588999999999999999999999877
No 374
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=52.13 E-value=35 Score=22.10 Aligned_cols=32 Identities=13% Similarity=-0.051 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHH--HHHHHhcCCCC
Q 046775 570 VWGALLGAARIYKNVEVGQHA--AEMLFAIEPEK 601 (771)
Q Consensus 570 ~~~~ll~a~~~~~~~~~a~~~--~~~~~~l~p~~ 601 (771)
-|-++...+...|+.+.|+.+ ++-+..++|.|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 355666777778888888888 44777777754
No 375
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=52.05 E-value=69 Score=27.03 Aligned_cols=27 Identities=11% Similarity=0.370 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046775 467 SWSAMIGGLAQHGRGKEALQMFGQMLE 493 (771)
Q Consensus 467 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 493 (771)
-|..++.-|..+|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 588999999999999999999999887
No 376
>PRK14015 pepN aminopeptidase N; Provisional
Probab=51.80 E-value=3.3e+02 Score=32.82 Aligned_cols=149 Identities=15% Similarity=0.180 Sum_probs=79.2
Q ss_pred HHHHHHHHcCChHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHh
Q 046775 470 AMIGGLAQHGRGKEALQ-MFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILG 547 (771)
Q Consensus 470 ~li~~~~~~g~~~~A~~-l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~ 547 (771)
..+.-++..+ ..++.+ ..++.... .|..--.+-|.++.+.+.. +....++...+.+.-.|- ..-|-.+...--
T Consensus 687 ~~l~~l~~~~-~~~~~~~~~~~~~~a---~~mtd~~~al~~l~~~~~~-~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~ 761 (875)
T PRK14015 687 VCLSYLAAAD-DEEAAELAEAQFDQA---DNMTDRLAALSALVNADLP-ERDEALADFYDRWKDDPLVMDKWFALQATSP 761 (875)
T ss_pred HHHHHHHhCC-ChhHHHHHHHHHhhC---CCHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHhCCCchhhHHHHHHHhCCC
Confidence 3333334433 334333 44444443 2333344555555554432 333334444444444554 334444443333
Q ss_pred hcCCHHHHHHHHHhCCCCC-CHhHHHHHHHHHHhcC------CHHHH-HHHHHHHHhcCCCCchhHHHHHHHHHhcCCch
Q 046775 548 RAGKFQEAMELVDTMPFQA-NASVWGALLGAARIYK------NVEVG-QHAAEMLFAIEPEKSSTHVLLSNIYASAGMWD 619 (771)
Q Consensus 548 r~g~~~eA~~~~~~m~~~p-~~~~~~~ll~a~~~~~------~~~~a-~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 619 (771)
+.+-++...++.+.-.+.+ ++--.++|++++...+ ....| .-+++.+++++|-||..=..|...+.+=.+++
T Consensus 762 ~~~~~~~v~~l~~hp~f~~~npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~~~~~~ 841 (875)
T PRK14015 762 APDTLERVRALMQHPAFDLKNPNRVRSLIGAFAAANPAGFHAADGSGYRFLADQILALDKINPQVAARLATPLIRWRRYD 841 (875)
T ss_pred CcCHHHHHHHHhcCCCCCCCCCcHHHHHHHHHhhcCCcccCCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhccC
Confidence 3344444444444333443 3335688888885433 22333 45888999999999998888888888777777
Q ss_pred hHHH
Q 046775 620 NVAK 623 (771)
Q Consensus 620 ~a~~ 623 (771)
+..+
T Consensus 842 ~~r~ 845 (875)
T PRK14015 842 PKRQ 845 (875)
T ss_pred HHHH
Confidence 6654
No 377
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=51.73 E-value=43 Score=36.71 Aligned_cols=43 Identities=16% Similarity=0.034 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 046775 569 SVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNI 611 (771)
Q Consensus 569 ~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 611 (771)
.+..++..++...+|++.|.+.++.++.++|+++..-..|-.|
T Consensus 677 l~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 677 LTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred hHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 3455666777788899999999999999999988776555444
No 378
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=51.71 E-value=2.6e+02 Score=27.96 Aligned_cols=83 Identities=20% Similarity=0.233 Sum_probs=47.0
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 046775 432 SDTFAGNSLVNMYAKCGSIDDADRAFSEIPDRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACN 511 (771)
Q Consensus 432 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 511 (771)
.|+.....+...|.+.|++.+|+..|-.-..++...+-.++.-....|...++ |...-.+++ -|.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~yL 152 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-QYL 152 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-HHH
Confidence 47788888999999999999999888765544443332233333333333322 111112222 344
Q ss_pred ccCcHHHHHHHHHHHHHh
Q 046775 512 HAGLVAEAKHHFESMEKK 529 (771)
Q Consensus 512 ~~g~~~~a~~~~~~m~~~ 529 (771)
..|++..|...++...+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 567888888887777654
No 379
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=51.63 E-value=1.9e+02 Score=28.27 Aligned_cols=76 Identities=12% Similarity=-0.023 Sum_probs=43.6
Q ss_pred CHHHHHHHHhhCC--CCCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCcHHHHHHHHH
Q 046775 449 SIDDADRAFSEIP--DRGI-VSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHIT-LVSVLCACNHAGLVAEAKHHFE 524 (771)
Q Consensus 449 ~~~~A~~~f~~~~--~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-~~~ll~a~~~~g~~~~a~~~~~ 524 (771)
+++.|..-|.+.. .|.+ .-|+.=+..|.+..+++.+.+--.+.++ +.||.+- ...+..+.+....+++|+..+.
T Consensus 25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAIKVLQ 102 (284)
T ss_pred hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 3444444443332 4444 3456667777777777777777777666 6777763 3333344455555666665555
Q ss_pred HH
Q 046775 525 SM 526 (771)
Q Consensus 525 ~m 526 (771)
+.
T Consensus 103 ra 104 (284)
T KOG4642|consen 103 RA 104 (284)
T ss_pred HH
Confidence 43
No 380
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=51.28 E-value=1.2e+02 Score=26.17 Aligned_cols=68 Identities=10% Similarity=0.085 Sum_probs=47.5
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 046775 554 EAMELVDTMPFQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDNKL 633 (771)
Q Consensus 554 eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 633 (771)
.++.-+-.+.+-|++.+-.+-|.|||.-+|+..|.++++-+...-+.....|-.+ ..++.-..++.|+
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~------------v~elkpvl~ELGI 137 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYY------------VKELKPVLNELGI 137 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHH------------HHHHHHHHHHhCC
Confidence 3344444556889999999999999999999999999998876544333333322 3455556666666
No 381
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=51.20 E-value=1.3e+02 Score=24.33 Aligned_cols=63 Identities=19% Similarity=0.119 Sum_probs=41.6
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CchhHHHHHHHHHhcCCch-hHHHHHHHHH
Q 046775 567 NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPE--KSSTHVLLSNIYASAGMWD-NVAKVRRFMK 629 (771)
Q Consensus 567 ~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~--~~~~~~~l~~~y~~~g~~~-~a~~~~~~m~ 629 (771)
|....-.|...+...|+.+.|...+-.+++.+|+ +..+-..|..++...|.-+ -+.+.|++|-
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL~ 86 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKLA 86 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3446666777778888888888888888887764 4666677777777777743 5667776653
No 382
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=50.29 E-value=3e+02 Score=28.29 Aligned_cols=86 Identities=7% Similarity=-0.012 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHhCC----CCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCChhHHHHHHHHHHHcCChHHHHHHHH
Q 046775 415 YEQGKQVHVHIIKFGF----MSDTFAGNSLVNMYAKCGSIDDADRAFSEIP-DRGIVSWSAMIGGLAQHGRGKEALQMFG 489 (771)
Q Consensus 415 ~~~a~~i~~~~~~~g~----~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~ 489 (771)
.+.+.+.+......+. ..++.....+.....+.|..+.-..+++... .++..-.+.++.+.+...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 4555666665555311 3455555566666666676665555555544 2344556666777776666666666666
Q ss_pred HHHHCC-CCCCH
Q 046775 490 QMLEDG-VLPNH 500 (771)
Q Consensus 490 ~m~~~g-~~pd~ 500 (771)
.....+ +++..
T Consensus 226 ~~l~~~~v~~~d 237 (324)
T PF11838_consen 226 LLLSNDKVRSQD 237 (324)
T ss_dssp HHHCTSTS-TTT
T ss_pred HHcCCcccccHH
Confidence 666643 44444
No 383
>PRK11619 lytic murein transglycosylase; Provisional
Probab=49.95 E-value=4.6e+02 Score=30.31 Aligned_cols=189 Identities=12% Similarity=-0.021 Sum_probs=93.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHH-HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046775 433 DTFAGNSLVNMYAKCGSIDDADRAFSEIPD--RGIVSWSA-MIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCA 509 (771)
Q Consensus 433 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 509 (771)
+..+...-+..-.+.++++.+...|..|+. .+..-|.- +..++...|+.++|...|++.... .+|-+++.+
T Consensus 311 ~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~------~~fYG~LAa 384 (644)
T PRK11619 311 STSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ------RGFYPMVAA 384 (644)
T ss_pred CcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC------CCcHHHHHH
Confidence 333444445555577788887777777762 12112221 345555578888888888776331 235554443
Q ss_pred HhccCcHHHHHHHH--HHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 046775 510 CNHAGLVAEAKHHF--ESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMPFQANASVWGALLGAARIYKNVEVG 587 (771)
Q Consensus 510 ~~~~g~~~~a~~~~--~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a 587 (771)
= +.|..-. ...- ..-.....-.| ----+..|...|+..+|...+..+--..+..-...+.......|..+.+
T Consensus 385 ~-~Lg~~~~-~~~~~~~~~~~~~~~~~----~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~a 458 (644)
T PRK11619 385 Q-RLGEEYP-LKIDKAPKPDSALTQGP----EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLS 458 (644)
T ss_pred H-HcCCCCC-CCCCCCCchhhhhccCh----HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHH
Confidence 1 1121100 0000 00000000001 1123456778889888888887664334545555555666778888888
Q ss_pred HHHHHHHHhcCC---CCchhHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 046775 588 QHAAEMLFAIEP---EKSSTHVLLSNIYASAGMWDNVAKVRRFMKDNKL 633 (771)
Q Consensus 588 ~~~~~~~~~l~p---~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 633 (771)
..+..+....+. .-|..|.-...-++..-..+.+.-.--...|.+.
T Consensus 459 i~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f 507 (644)
T PRK11619 459 VQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYAMAIARQESAW 507 (644)
T ss_pred HHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCC
Confidence 777765432110 1123344444445544455544433222335554
No 384
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=49.71 E-value=4.3e+02 Score=31.76 Aligned_cols=151 Identities=15% Similarity=0.112 Sum_probs=78.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHh
Q 046775 469 SAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILG 547 (771)
Q Consensus 469 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~ 547 (771)
|..+.-++..+..+......++..+. .|..--.+-|.++.+.+. .+....++...+.+.-.|- ..-|-.+...-.
T Consensus 676 n~~l~~l~~~~~~~~~~~~~~~~~~a---~~mtd~~~al~~l~~~~~-~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~ 751 (863)
T TIGR02414 676 NACLSYLSAADDAEIRNLALEQFKSA---DNMTDRLAALSALVHFES-DFRERALAAFYQKWKDDPLVMDKWFALQATSP 751 (863)
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHhC---CCHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHCCCchhHHHHHHHHhCCC
Confidence 44444444445443223333344333 233334445555554333 2333344444444444554 333444433333
Q ss_pred hcCCHHHHHHHHHhCCCCC-CHhHHHHHHHHHHhcC-------CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCch
Q 046775 548 RAGKFQEAMELVDTMPFQA-NASVWGALLGAARIYK-------NVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWD 619 (771)
Q Consensus 548 r~g~~~eA~~~~~~m~~~p-~~~~~~~ll~a~~~~~-------~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 619 (771)
+.+-++...++.+.-.+.+ ++--.++|+++....+ +-+-=.-+++.+++++|-||..=..|...+.+=.+++
T Consensus 752 ~~~~~~~v~~l~~h~~f~~~npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~w~~~~ 831 (863)
T TIGR02414 752 RPDTLERVKALLQHPAFDLKNPNRVRALIGAFANNNLVRFHDISGSGYRFLADQIIAIDRFNPQVAARLLEPLTRWRKLD 831 (863)
T ss_pred cccHHHHHHHHhcCCCCCcCCCcHHHHHHHHHHhcCcccccCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhcCC
Confidence 3334444444443333433 3335688888885332 2222345888999999999998888888888777777
Q ss_pred hHHH
Q 046775 620 NVAK 623 (771)
Q Consensus 620 ~a~~ 623 (771)
+..+
T Consensus 832 ~~r~ 835 (863)
T TIGR02414 832 PKRQ 835 (863)
T ss_pred HHHH
Confidence 6644
No 385
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=49.42 E-value=3.5e+02 Score=28.67 Aligned_cols=89 Identities=16% Similarity=0.174 Sum_probs=56.4
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhhCCCCCcc--hHHHHHHHHh-hcCCHHHHHHHHHhCCC---------CCCHhHHHHH
Q 046775 507 LCACNHAGLVAEAKHHFESMEKKFGIQPMQE--HYACMIDILG-RAGKFQEAMELVDTMPF---------QANASVWGAL 574 (771)
Q Consensus 507 l~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~--~y~~lv~~l~-r~g~~~eA~~~~~~m~~---------~p~~~~~~~l 574 (771)
+..+.+.|-+..|.++.+-+. .+.|+.+ .--.+||.|+ |+++++--+++++.... -|+ ..++.-
T Consensus 110 i~~L~~RG~~rTAlE~~KlLl---sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn-~a~S~a 185 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLL---SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN-FAFSIA 185 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHH---hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc-HHHHHH
Confidence 446677788888888877766 4566544 3445567664 78888877777776432 122 233333
Q ss_pred HHHHHhcCC--------------HHHHHHHHHHHHhcCC
Q 046775 575 LGAARIYKN--------------VEVGQHAAEMLFAIEP 599 (771)
Q Consensus 575 l~a~~~~~~--------------~~~a~~~~~~~~~l~p 599 (771)
|.-....++ .+.|..++++++..-|
T Consensus 186 LA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 186 LAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HHHHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 443333333 3888899999998888
No 386
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=49.03 E-value=26 Score=33.62 Aligned_cols=57 Identities=21% Similarity=0.318 Sum_probs=43.7
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 046775 545 ILGRAGKFQEAMELVDTM-PFQAN-ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEK 601 (771)
Q Consensus 545 ~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 601 (771)
++...|+.+-|.+++.+. ...|+ ...|--+...--+.|+.+.|.+++++.++++|+|
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 455677777777877776 34554 4478877777788899999999999999998875
No 387
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=48.97 E-value=83 Score=30.42 Aligned_cols=63 Identities=11% Similarity=0.034 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHH-------HHhcCC--C----CchhHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 046775 569 SVWGALLGAARIYKNVEVGQHAAEM-------LFAIEP--E----KSSTHVLLSNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 569 ~~~~~ll~a~~~~~~~~~a~~~~~~-------~~~l~p--~----~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
.++.-+.+.||..|+.+.-...+++ +++-+. . +.....+++.++.+.|+.++|.+.+..+...
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 3666677788888885554444444 444332 1 2345668899999999999999999877654
No 388
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.97 E-value=18 Score=41.46 Aligned_cols=95 Identities=18% Similarity=0.262 Sum_probs=65.8
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHH
Q 046775 507 LCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMPFQANASVWGALLGAARIYKNVEV 586 (771)
Q Consensus 507 l~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~ 586 (771)
+.-+-+.|-.+-|+.+.+.=...| ++...+|+++.|++.-++. .|..+|..|......+||.+.
T Consensus 627 IaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~ale~akkl---dd~d~w~rLge~Al~qgn~~I 690 (1202)
T KOG0292|consen 627 IAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVALEAAKKL---DDKDVWERLGEEALRQGNHQI 690 (1202)
T ss_pred HHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHHHHHHHhc---CcHHHHHHHHHHHHHhcchHH
Confidence 333445566666665544322222 3445689999999988875 367799999999999999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHH
Q 046775 587 GQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVR 625 (771)
Q Consensus 587 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 625 (771)
|+..+++.... ..|+-+|.-.|+.++-.++-
T Consensus 691 aEm~yQ~~knf--------ekLsfLYliTgn~eKL~Km~ 721 (1202)
T KOG0292|consen 691 AEMCYQRTKNF--------EKLSFLYLITGNLEKLSKMM 721 (1202)
T ss_pred HHHHHHHhhhh--------hheeEEEEEeCCHHHHHHHH
Confidence 99999976544 45777788888765544433
No 389
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=48.47 E-value=4.3e+02 Score=29.53 Aligned_cols=405 Identities=7% Similarity=-0.035 Sum_probs=192.7
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHH-HHHHhcCCCcHHHHHHHHHHHHhCCCCChhhHHHHH
Q 046775 60 SVVSWNSLFSCYVHCDFLEEAVCFFKEMVLSGIRPNEFSLSSM-INACAGSGDSLLGRKIHGYSIKLGYDSDMFSANALV 138 (771)
Q Consensus 60 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li 138 (771)
+...|+.+|.---+....+.+...+..+... .|..+-|=.- -.-=.+.|..+.+.++++..+.. ++.++..|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 4456777776555555555556666666643 3444433221 11223567777888888877753 456666666665
Q ss_pred HHHH-hcCChhHHHHHHccCCC------CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHh---h
Q 046775 139 DMYA-KVGNLEDAVAVFKDIEH------PDIVSWNAVIAGCVLHEHNDWALKLFQQMKSSEINPNMFTYTSALKAC---A 208 (771)
Q Consensus 139 ~~y~-~~g~~~~A~~~f~~~~~------~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~---~ 208 (771)
.... ..|+.+..++.|+.... .....|-..|.--..++++.....+|++.++.. . .-|+.....+ .
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP---~-~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP---L-HQLNRHFDRFKQLL 196 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh---h-hHhHHHHHHHHHHH
Confidence 5543 34677777777776553 445568888887777888888888888887642 1 1111111111 1
Q ss_pred cC------CcHHHHHHHHHHHHHccCCCChhHHHHHHHhhhcCCC-hHHHHHHhhhCCCCCeehHHHHHHHHHhCCChhH
Q 046775 209 GM------ELKELGRQLHCSLIKMEIKSDPIVGVGLVDMYAKCGS-MDEARMIFHLMPEKNLIAWNIVISGHLQNGGDME 281 (771)
Q Consensus 209 ~~------~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~-~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~ 281 (771)
.. ...+...++-....... .-...+. .+.-....+....+. +..++
T Consensus 197 ~~~~~~~l~~~d~~~~l~~~~~~~~-------------~~~~~~~~~e~~~~~v~~~~~~s--------------~~l~~ 249 (577)
T KOG1258|consen 197 NQNEEKILLSIDELIQLRSDVAERS-------------KITHSQEPLEELEIGVKDSTDPS--------------KSLTE 249 (577)
T ss_pred hcCChhhhcCHHHHHHHhhhHHhhh-------------hcccccChhHHHHHHHhhccCcc--------------chhhH
Confidence 11 11111111111111000 0000000 000011111111110 00111
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHhccCChhHHHHHHHHHHHhc-------CCCchHHHhHHHHHHHhcCCHHHHHH
Q 046775 282 AASLFPWMYREGVGFDQTTLSTVLKSVASFQAIGVCKQVHALSVKTA-------FESDDYIVNSLIDAYGKCGHVEDAVK 354 (771)
Q Consensus 282 A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g-------~~~~~~~~~~Li~~y~k~g~~~~A~~ 354 (771)
+.....+.... --..+.........+..++.-++.. ..++..+|...++--.+.|+.+...-
T Consensus 250 ~~~~l~~~~~~-----------~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~ 318 (577)
T KOG1258|consen 250 EKTILKRIVSI-----------HEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFI 318 (577)
T ss_pred HHHHHHHHHHH-----------HHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHH
Confidence 11111000000 0000000111111122222222211 12334567777777778888888888
Q ss_pred HHHhcCCCc---eecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCC
Q 046775 355 IFKESSAVD---LVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFM 431 (771)
Q Consensus 355 ~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~ 431 (771)
+|++..-+- ...|--.+.-....|+.+-|-.++..-.+--++-.+.+-..--.-+-..|+...|+.+++.+...- +
T Consensus 319 l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-p 397 (577)
T KOG1258|consen 319 LFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-P 397 (577)
T ss_pred HHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-C
Confidence 887755331 233443333333447766666666555443333223222222223445678888888888776654 4
Q ss_pred CchhHHHHHHHHHHhcCCHHHHH---HHHhhCC--CCChhHHHHHHHH-----HHHcCChHHHHHHHHHHHHCCCCCCHH
Q 046775 432 SDTFAGNSLVNMYAKCGSIDDAD---RAFSEIP--DRGIVSWSAMIGG-----LAQHGRGKEALQMFGQMLEDGVLPNHI 501 (771)
Q Consensus 432 ~~~~~~~~Li~~y~k~g~~~~A~---~~f~~~~--~~~~~~~~~li~~-----~~~~g~~~~A~~l~~~m~~~g~~pd~~ 501 (771)
.-+.+-..-+.+--+.|+.+.+. +++.... ..+....+.+..- +.-.++.+.|..++.+|.+. ++++..
T Consensus 398 g~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~ 476 (577)
T KOG1258|consen 398 GLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKV 476 (577)
T ss_pred chhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHH
Confidence 44444455566677777777777 4443332 1222222222222 23346677777777777774 444555
Q ss_pred HHHHHHHHHh
Q 046775 502 TLVSVLCACN 511 (771)
Q Consensus 502 t~~~ll~a~~ 511 (771)
-|..++.-+.
T Consensus 477 ~~~~~~~~~~ 486 (577)
T KOG1258|consen 477 LYLELIRFEL 486 (577)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 390
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=48.39 E-value=60 Score=33.13 Aligned_cols=89 Identities=8% Similarity=0.047 Sum_probs=66.4
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 046775 538 HYACMIDILGRAGKFQEAMELVDTMP----FQAN--ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNI 611 (771)
Q Consensus 538 ~y~~lv~~l~r~g~~~eA~~~~~~m~----~~p~--~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 611 (771)
+|--=..-|.+..++..|.+.+.+.- -.|| .+.|..-..+-.-.||+..+..-..+++.++|.+.-+|..=+.+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 34444556778889999999987751 2343 34555555555667999999999999999999999999988888
Q ss_pred HHhcCCchhHHHHHH
Q 046775 612 YASAGMWDNVAKVRR 626 (771)
Q Consensus 612 y~~~g~~~~a~~~~~ 626 (771)
+....+.++|..+-+
T Consensus 163 ~~eLe~~~~a~nw~e 177 (390)
T KOG0551|consen 163 LLELERFAEAVNWCE 177 (390)
T ss_pred HHHHHHHHHHHHHHh
Confidence 888888666655443
No 391
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=48.35 E-value=2e+02 Score=31.04 Aligned_cols=138 Identities=13% Similarity=0.160 Sum_probs=91.1
Q ss_pred cCcHHHHH-HHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHhHHHHHHHHHHhcCCHHHHHH
Q 046775 513 AGLVAEAK-HHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMP--FQANASVWGALLGAARIYKNVEVGQH 589 (771)
Q Consensus 513 ~g~~~~a~-~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~--~~p~~~~~~~ll~a~~~~~~~~~a~~ 589 (771)
.|++-.|- ++|..++ .+.-.| .|..-........|.+|.|+..+.... +.....+...++......+..+.|..
T Consensus 302 ~gd~~aas~~~~~~lr-~~~~~p--~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 302 DGDIIAASQQLFAALR-NQQQDP--VLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred ccCHHHHHHHHHHHHH-hCCCCc--hhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 45555554 4555544 433344 444444455677899999999998774 44455677778888888889999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCCccceEEEcCEEEEEEeCC
Q 046775 590 AAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDNKLKKEPGMSWIEVKDKVYTFTVGD 655 (771)
Q Consensus 590 ~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~~ 655 (771)
.++.++.-+-+++.....-+---...|-.+++.-.|+..-....... .-|+..-....-|.-|.
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~--~g~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ--SGWVNFLSSTQYFNDGN 442 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc--ccceeeeccceeccCcc
Confidence 99999887766666554444444456778888888887765554333 34776655555565444
No 392
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=48.07 E-value=33 Score=32.52 Aligned_cols=35 Identities=11% Similarity=0.091 Sum_probs=17.6
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 046775 565 QANASVWGALLGAARIYKNVEVGQHAAEMLFAIEP 599 (771)
Q Consensus 565 ~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p 599 (771)
.|++.++..++.++...|+.++|++..+++..+-|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 44444455555555555555555555555554444
No 393
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=48.03 E-value=3.8e+02 Score=28.78 Aligned_cols=335 Identities=15% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhcCC---
Q 046775 34 NSLVVMYAKCGNFIDSRRLFDAIPERSVVSWNSLFSCYVHCDFLEEAVCFFKEMVLSGIRPNEFSLSSMINACAGSG--- 110 (771)
Q Consensus 34 ~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~--- 110 (771)
|-++.-|...|+..+|.+...++. .+.+.....-++++-.+.-..|..+.-.+...+...+-..-+.+.+++.+.+
T Consensus 218 n~~l~eyv~~getrea~rciR~L~-vsffhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~kGfsr~~~sl 296 (645)
T KOG0403|consen 218 NGNLIEYVEIGETREACRCIRELG-VSFFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGKGFSRKGGSL 296 (645)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhC-CCchhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccccCchhhcccc
Q ss_pred -----CcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHH
Q 046775 111 -----DSLLGRKIHGYSIKLGYDSDMFSANALVDMYAKVGNLEDAVAVFKDIEHPDIVSWNAVIAGCVLHEHNDWALKLF 185 (771)
Q Consensus 111 -----~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~ 185 (771)
+...|+..++.++-.....+-.--+++-..-..+|+.+. .+.|++ ....+|.-|..+|+..+..+.+
T Consensus 297 ddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~-~r~Fkk-------~~~~IIqEYFlsgDt~Evi~~L 368 (645)
T KOG0403|consen 297 DDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSEN-LRAFKK-------DLTPIIQEYFLSGDTPEVIRSL 368 (645)
T ss_pred ccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchH-HHHHHH-------hhHHHHHHHHhcCChHHHHHHH
Q ss_pred HHHHhCCCCCChhhHHHHHHHhhcCCcHHHHHHHHHHHHHccCCCChhHHHHHHHhhhcCCChHHHHHHhhhCCC-----
Q 046775 186 QQMKSSEINPNMFTYTSALKACAGMELKELGRQLHCSLIKMEIKSDPIVGVGLVDMYAKCGSMDEARMIFHLMPE----- 260 (771)
Q Consensus 186 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~----- 260 (771)
+.+-.....|-..-+..-|..=.+...-+.|-.+ |-+.+...=..++.+.-|..+.+
T Consensus 369 ~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvl------------------lS~L~~e~fsteDv~~~F~mLLesaedt 430 (645)
T KOG0403|consen 369 RDLNLPEYNPGFLKLLITLALDRKNSEKEMASVL------------------LSDLHGEVFSTEDVEKGFDMLLESAEDT 430 (645)
T ss_pred HHcCCccccchHHHHHHHHHhccchhHHHHHHHH------------------HHHhhcccCCHHHHHHHHHHHHhcchhh
Q ss_pred -CCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCChhHHHHHHHHHHHhc-----CCCchH
Q 046775 261 -KNLIAWNIVISGHLQNGGDMEAASLFPWMYREGVGFDQTTLSTVLKSVASFQAIGVCKQVHALSVKTA-----FESDDY 334 (771)
Q Consensus 261 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g-----~~~~~~ 334 (771)
-|...-...+..|...--.++.+.-+.-=.-.|-.|-..+-...+.....+=....+-+-....--.| +..-..
T Consensus 431 ALD~p~a~~elalFlARAViDdVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeRllr~WGgGG~g~sVed~kd 510 (645)
T KOG0403|consen 431 ALDIPRASQELALFLARAVIDDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAGERLLRVWGGGGGGWSVEDAKD 510 (645)
T ss_pred hccccccHHHHHHHHHHHHhhcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccchhheecCCCCcchHHHHHH
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHHhcCCC---ceecHHHHHHHHHHcCChHHHHHHHHHHhcCCC
Q 046775 335 IVNSLIDAYGKCGHVEDAVKIFKESSAV---DLVACTSMITAYAQFGLGEEALKLYLEMQDREI 395 (771)
Q Consensus 335 ~~~~Li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 395 (771)
-...|+.-|...|++.+|....+++.-| ..+.+.+++.+.-+.|+...-+.++++.-.+|+
T Consensus 511 kI~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 511 KIDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
No 394
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=48.02 E-value=49 Score=32.11 Aligned_cols=67 Identities=12% Similarity=0.100 Sum_probs=42.1
Q ss_pred CCCCHhHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHh
Q 046775 564 FQANASVWGA-LLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKD 630 (771)
Q Consensus 564 ~~p~~~~~~~-ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 630 (771)
+.|...+|-+ -+-.+.+.++.+.++.-..++++++|+..-.+..|++.......+++|..+.....+
T Consensus 39 ~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 39 INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYS 106 (284)
T ss_pred cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 4555543322 222223456667777777777777777777777777777777777777777665543
No 395
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=47.71 E-value=2.1e+02 Score=25.64 Aligned_cols=50 Identities=10% Similarity=0.131 Sum_probs=31.6
Q ss_pred ChhHHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 046775 464 GIVSWSAMIGGLAQHGR-GKEALQMFGQMLEDGVLPNHITLVSVLCACNHA 513 (771)
Q Consensus 464 ~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 513 (771)
+-.+|.+++.+.++..- ---+..+|.-|.+.+.+++..-|..++.+|.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 34566777776655444 234566677777766677777777777776654
No 396
>PRK13342 recombination factor protein RarA; Reviewed
Probab=47.49 E-value=4e+02 Score=28.83 Aligned_cols=47 Identities=15% Similarity=0.066 Sum_probs=33.4
Q ss_pred ecHHHHHHHHHH---cCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhc
Q 046775 365 VACTSMITAYAQ---FGLGEEALKLYLEMQDREINPDSFVCSSLLNACAN 411 (771)
Q Consensus 365 ~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 411 (771)
..+..+++++.+ .++++.|+..+..|.+.|..|....-..+..++..
T Consensus 228 ~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ed 277 (413)
T PRK13342 228 DEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASED 277 (413)
T ss_pred cHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 345556666655 47899999999999999988876665555555433
No 397
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=46.87 E-value=37 Score=20.47 Aligned_cols=28 Identities=11% Similarity=0.108 Sum_probs=20.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 046775 582 KNVEVGQHAAEMLFAIEPEKSSTHVLLS 609 (771)
Q Consensus 582 ~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 609 (771)
|+.+.+..++++++...|.++..+...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 4667788888888888887777666544
No 398
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=45.99 E-value=64 Score=23.12 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=24.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046775 471 MIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVL 507 (771)
Q Consensus 471 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 507 (771)
+.-|+.+.|++++|.+..+.+++ +.|+..-...|-
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHH
Confidence 45677888889999998888888 778776554443
No 399
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=45.56 E-value=2.2e+02 Score=25.20 Aligned_cols=70 Identities=16% Similarity=0.119 Sum_probs=47.8
Q ss_pred CCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHHhhCCCCC--cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH
Q 046775 497 LPNHITLVSVLCACNHAG---LVAEAKHHFESMEKKFGIQPM--QEHYACMIDILGRAGKFQEAMELVDTM-PFQANA 568 (771)
Q Consensus 497 ~pd~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~i~p~--~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~ 568 (771)
.|...|-..+..++.++. ++.+|+.+++.+.+. -.|+ .+..-.+.-.+.|.|+++++..+++.. ..+||.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~--~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS--AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh--cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 566666667777777764 567889999988752 2333 333334556788999999999998876 355654
No 400
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=44.05 E-value=4.7e+02 Score=28.68 Aligned_cols=18 Identities=17% Similarity=0.499 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHhhCCC
Q 046775 516 VAEAKHHFESMEKKFGIQ 533 (771)
Q Consensus 516 ~~~a~~~~~~m~~~~~i~ 533 (771)
+.-++.+++.|...||-.
T Consensus 512 l~~~r~~yd~a~~~fg~d 529 (568)
T KOG2396|consen 512 LANIREYYDRALREFGAD 529 (568)
T ss_pred chHHHHHHHHHHHHhCCC
Confidence 566778888888887733
No 401
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=43.93 E-value=1.4e+02 Score=23.98 Aligned_cols=39 Identities=15% Similarity=0.114 Sum_probs=29.7
Q ss_pred hcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHH
Q 046775 446 KCGSIDDADRAFSEIPDRGIVSWSAMIGGLAQHGRGKEAL 485 (771)
Q Consensus 446 k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 485 (771)
..|+.+.|+++++.++ ++...+...+.++...|+..-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 5577888888888888 77777888888888877765554
No 402
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=43.61 E-value=32 Score=34.46 Aligned_cols=60 Identities=15% Similarity=0.229 Sum_probs=39.0
Q ss_pred hhcCCHHHHHHHHHhC-CCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHH
Q 046775 547 GRAGKFQEAMELVDTM-PFQANAS-VWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHV 606 (771)
Q Consensus 547 ~r~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~ 606 (771)
-+.|+.|+|..+|+.. .+.|+.. +..-+..-.-.++++-+|-..+-+++.+.|.|+.+++
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 3667777777777654 4555433 3333333334566777888888888888888877766
No 403
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=43.19 E-value=3.1e+02 Score=26.41 Aligned_cols=60 Identities=15% Similarity=0.040 Sum_probs=39.0
Q ss_pred hHHHhHHHHHHHhcCCHHHHHHHHHhcCCCceec-HHHHHHH--HHHcCChHHHHHHHHHHhc
Q 046775 333 DYIVNSLIDAYGKCGHVEDAVKIFKESSAVDLVA-CTSMITA--YAQFGLGEEALKLYLEMQD 392 (771)
Q Consensus 333 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~-~~~li~~--~~~~g~~~~A~~l~~~m~~ 392 (771)
+.++|-|.--+...|+++.|.+.|+...+.|+.- |..+=.| +--.|++.-|.+-|.+.-+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHh
Confidence 5678888888888899999999998877755432 2222111 1234677777776666544
No 404
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=42.60 E-value=60 Score=34.78 Aligned_cols=44 Identities=16% Similarity=0.153 Sum_probs=31.1
Q ss_pred HHHhCCCCCCHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 046775 558 LVDTMPFQANAS--VWGALLGAARIYKNVEVGQHAAEMLFAIEPEK 601 (771)
Q Consensus 558 ~~~~m~~~p~~~--~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 601 (771)
+|....++|... ++++-++.+.+++|+.-|...+++++++.|..
T Consensus 288 YFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 288 YFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 344445666533 77788888999999999999999999999844
No 405
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=42.22 E-value=74 Score=31.98 Aligned_cols=99 Identities=14% Similarity=0.123 Sum_probs=65.4
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCCccceEEEcCEEEEEEeCCCC
Q 046775 578 ARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDNKLKKEPGMSWIEVKDKVYTFTVGDRS 657 (771)
Q Consensus 578 ~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~~~~ 657 (771)
.++.|+.|.|...++.++.+.|.++..+.-++.......+.-+|...+- +.+.-.||-|- ..+..++.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~----~ALtisP~nse--------ALvnR~RT 193 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYV----KALTISPGNSE--------ALVNRART 193 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhh----eeeeeCCCchH--------HHhhhhcc
Confidence 4678999999999999999999999999888887777777767766654 23334466553 23445667
Q ss_pred ccchHHHHHHH-HHHHHHHHhcCcccCCcccc
Q 046775 658 HARSKEIYAKL-DEVSDLLNKAGYVPMVETDL 688 (771)
Q Consensus 658 h~~~~~i~~~l-~~l~~~~~~~g~~p~~~~~~ 688 (771)
-|-.++|-++. +.+..+-.+.-.+|..+..|
T Consensus 194 ~plV~~iD~r~l~svdskrd~~~~i~~sN~AL 225 (472)
T KOG3824|consen 194 TPLVSAIDRRMLRSVDSKRDEFNHIQHSNTAL 225 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhcccccHHH
Confidence 77777776543 33333333334444443333
No 406
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=41.97 E-value=2.1e+02 Score=24.05 Aligned_cols=86 Identities=8% Similarity=0.074 Sum_probs=50.8
Q ss_pred ChhHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcCCHHHHHHHHHhcCCCceecHHHHHHHHHHcCChHHHHHHHHHHhc
Q 046775 313 AIGVCKQVHALSVKTAFESDDYIVNSLIDAYGKCGHVEDAVKIFKESSAVDLVACTSMITAYAQFGLGEEALKLYLEMQD 392 (771)
Q Consensus 313 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 392 (771)
..++|..|.+.+...+- ....+.-.-+..+.+.|++++|...=.....||.+.|-++-. .+.|..+++...+.++-.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 34555666665555543 333444445556778899999955445566688888877654 477888888888887776
Q ss_pred CCCCCCHhhH
Q 046775 393 REINPDSFVC 402 (771)
Q Consensus 393 ~g~~p~~~t~ 402 (771)
.| .|....|
T Consensus 98 ~g-~~~~q~F 106 (116)
T PF09477_consen 98 SG-SPELQAF 106 (116)
T ss_dssp -S-SHHHHHH
T ss_pred CC-CHHHHHH
Confidence 55 4444443
No 407
>PRK09169 hypothetical protein; Validated
Probab=41.95 E-value=1e+03 Score=31.88 Aligned_cols=463 Identities=11% Similarity=0.058 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCC-----CChhhHHHHHHHhhcCCcHHHHHHHHHHH-------HHccCCCCh
Q 046775 165 WNAVIAGCVLHEHNDWALKLFQQMKSSEIN-----PNMFTYTSALKACAGMELKELGRQLHCSL-------IKMEIKSDP 232 (771)
Q Consensus 165 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~-----p~~~t~~~ll~a~~~~~~~~~a~~l~~~~-------~~~g~~~~~ 232 (771)
|..+.+.+++.-+...+.+.+..+...-+. .+...+..+|+++++-.+-..+...-..+ .+.-...+.
T Consensus 125 ~a~l~n~lsK~~d~~aC~~a~a~ia~q~~~~~~~~l~~~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~~~l~~al~~ 204 (2316)
T PRK09169 125 LAHLGNKLSKYPDRPACMAAIAWIAGQLLDALREALDAISFALLLNALSKWPDNTDCQTAAEQLADRLASDSRLLQAMDA 204 (2316)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccCCCchHHHHHHHHHHHHhccCHHHHHhcch
Q ss_pred hHHHHHHHhhhcCCChHHHHHHhhhCCCC-----------CeehHHHHHHHHHhCCChhHHHHHHHHHHH-------CCC
Q 046775 233 IVGVGLVDMYAKCGSMDEARMIFHLMPEK-----------NLIAWNIVISGHLQNGGDMEAASLFPWMYR-------EGV 294 (771)
Q Consensus 233 ~~~~~Li~~y~~~g~~~~A~~~f~~m~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~g~ 294 (771)
.-...++++++|.-+-......-..+-.+ +......+++++.+-.+.+.+...-..+-. ...
T Consensus 205 q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~l~~~l~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~lr~ 284 (2316)
T PRK09169 205 QEVANALNALSKWPDSPRCRNAAERLAERLADEPGLLQSLRAQEVALLLNALSKWPDDEACRQAAEALAARLAREPGLRL 284 (2316)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChHHHHhcCHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChhhhh
Q ss_pred CCCHhhHHHHHHHHhccCChh--------HHHHHHHHHHHhcCCCchHHHhHHHHHHHhcCCHHHHHHHHHhcCC-----
Q 046775 295 GFDQTTLSTVLKSVASFQAIG--------VCKQVHALSVKTAFESDDYIVNSLIDAYGKCGHVEDAVKIFKESSA----- 361 (771)
Q Consensus 295 ~pd~~t~~~ll~a~~~~~~~~--------~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~----- 361 (771)
..|..-+...+.++++..+-+ .+.++..... ..-..+..-....+++++|..+-+.+....+.+-.
T Consensus 285 ~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~~~~~-l~~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~~~ 363 (2316)
T PRK09169 285 ALDPQGVANALNALSKWPDTEACRQAAEALAERLAQERG-LLQAMNAQAVANALNALSKWPDEEACRAAAEALAARLARD 363 (2316)
T ss_pred hcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhChh-hhhhCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhC
Q ss_pred ------CceecHHHHHHHHHHcCChH----HHHHHHHHHhcC---CCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHH-
Q 046775 362 ------VDLVACTSMITAYAQFGLGE----EALKLYLEMQDR---EINPDSFVCSSLLNACANLSAYEQGKQVHVHIIK- 427 (771)
Q Consensus 362 ------~~~~~~~~li~~~~~~g~~~----~A~~l~~~m~~~---g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~- 427 (771)
-|..-....+.++++-++.+ -|..+...+... .-..|..-...++++|++.+.-+...+....+..
T Consensus 364 ~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA~rL~~~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~aLA~r 443 (2316)
T PRK09169 364 AGLRRALNAQELANALNALSKWPDEEACRAAAEALAARLARDAGLRAALNAQGVANALNALSKWPGAEACRQAALALAAR 443 (2316)
T ss_pred hhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHhchhhhhhcChHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q ss_pred ------hCCCCchhHHHHHHHHHHhcCCHH----HHHHHHhhCC-------CCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 046775 428 ------FGFMSDTFAGNSLVNMYAKCGSID----DADRAFSEIP-------DRGIVSWSAMIGGLAQHGRGKEALQMFGQ 490 (771)
Q Consensus 428 ------~g~~~~~~~~~~Li~~y~k~g~~~----~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 490 (771)
..-..++.-....+.+++|.++-+ .|..+...+. .-+..-....+.++++-++.+.....-+.
T Consensus 444 l~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa~~LA~rl~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~~aA~a 523 (2316)
T PRK09169 444 LAADARLRNALSAQELANALNALSKWPDEAACRRAAEALAARLAGDAELRQALDAQGLANALNALSKWPDSDACRAAAEA 523 (2316)
T ss_pred HhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcChhhhhhcChHHHHHHHHHHhcCCccHHHHHHHHH
Q ss_pred H-------HHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC------CcchHHHHHHHHhhcCCH----H
Q 046775 491 M-------LEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQP------MQEHYACMIDILGRAGKF----Q 553 (771)
Q Consensus 491 m-------~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p------~~~~y~~lv~~l~r~g~~----~ 553 (771)
+ -..--.-|..-+.+.++|+++-++.+.....-..+.....-+| +....+..+.+|.+-+.- +
T Consensus 524 LA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~AA~aLA~~la~~~~l~~~~naQ~LAN~LnALSKWP~~~acr~ 603 (2316)
T PRK09169 524 LADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDCRAAAEALAARLARRPDLRSALNAQGLANLLNALSKWPDEDACRA 603 (2316)
T ss_pred HHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhcChhhhhccCHHHHHHHHHHHhhCCCchhHHH
Q ss_pred HHHHHHHhCCCCC------CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHH-----HHHHHHHhcCCchhHH
Q 046775 554 EAMELVDTMPFQA------NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHV-----LLSNIYASAGMWDNVA 622 (771)
Q Consensus 554 eA~~~~~~m~~~p------~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~-----~l~~~y~~~g~~~~a~ 622 (771)
-|..+.....-+| |.--|..+++++.+-.+.+....++..+-+.=..++.... .|+|+.-..-+|.+..
T Consensus 604 Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~~~~cr~Aa~aLA~~L~~~~~l~~af~aQ~LaN~LnALSKWp~~~ 683 (2316)
T PRK09169 604 AAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPDEDDCRQAAEALAARLLRDAGLPRAFDAQGLANALNALSKWPDEA 683 (2316)
T ss_pred HHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcchhHHhcCcHHHHHHHHHHHhCCCcH
Q ss_pred HHHHHH
Q 046775 623 KVRRFM 628 (771)
Q Consensus 623 ~~~~~m 628 (771)
..++.+
T Consensus 684 ~c~~Aa 689 (2316)
T PRK09169 684 ACRAAA 689 (2316)
T ss_pred HHHHHH
No 408
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=41.42 E-value=10 Score=27.20 Aligned_cols=12 Identities=33% Similarity=0.695 Sum_probs=8.8
Q ss_pred cccccCccchhh
Q 046775 728 LRICVDCHTSFE 739 (771)
Q Consensus 728 ~r~c~dch~~~k 739 (771)
.-||+|||.---
T Consensus 20 iYiCgdC~~en~ 31 (62)
T KOG3507|consen 20 IYICGDCGQENT 31 (62)
T ss_pred EEEecccccccc
Confidence 458999997543
No 409
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=41.33 E-value=52 Score=22.49 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=14.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHC
Q 046775 269 VISGHLQNGGDMEAASLFPWMYRE 292 (771)
Q Consensus 269 li~~~~~~g~~~~A~~~~~~m~~~ 292 (771)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445666666666666666666543
No 410
>COG4896 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.05 E-value=14 Score=26.69 Aligned_cols=22 Identities=27% Similarity=0.702 Sum_probs=16.6
Q ss_pred CCeEEEeeccccccCccc--hhhhhhhh
Q 046775 719 GATIRVKKNLRICVDCHT--SFEFISKI 744 (771)
Q Consensus 719 ~~~~~~~kn~r~c~dch~--~~k~~s~~ 744 (771)
..|||-. +|.|||. ++|-+|++
T Consensus 26 N~PIrty----mC~eC~~Rva~kt~~R~ 49 (68)
T COG4896 26 NKPIRTY----MCPECEHRVAIKTISRV 49 (68)
T ss_pred CCCceeE----echhhHhhhchhhHHHh
Confidence 4577765 9999995 67778765
No 411
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=40.60 E-value=81 Score=29.84 Aligned_cols=31 Identities=16% Similarity=0.079 Sum_probs=15.3
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 046775 497 LPNHITLVSVLCACNHAGLVAEAKHHFESME 527 (771)
Q Consensus 497 ~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 527 (771)
.|+..++..++.++...|+.++|.+...++.
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455445444445555555555554444444
No 412
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=40.43 E-value=3.5e+02 Score=26.16 Aligned_cols=123 Identities=16% Similarity=0.130 Sum_probs=70.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC----cchHHHH
Q 046775 468 WSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNH-ITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM----QEHYACM 542 (771)
Q Consensus 468 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~----~~~y~~l 542 (771)
.+.-|+.+.+.+...+|+...++-++. +|.. -+-..++.-++-.|++++|..-++-.. .+.|+ ...|..+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a---~l~p~~t~~a~lyr~l 78 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAA---TLSPQDTVGASLYRHL 78 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHh---hcCcccchHHHHHHHH
Confidence 445567777888888888888877774 4544 355566677788888888887766554 23444 3445444
Q ss_pred HHHHhhcCCHHHHH-HHHHh--CCCCC--CHhHHHHH-HHHHHhc--CCHHHHHHHHHHHHhcCCCCc
Q 046775 543 IDILGRAGKFQEAM-ELVDT--MPFQA--NASVWGAL-LGAARIY--KNVEVGQHAAEMLFAIEPEKS 602 (771)
Q Consensus 543 v~~l~r~g~~~eA~-~~~~~--m~~~p--~~~~~~~l-l~a~~~~--~~~~~a~~~~~~~~~l~p~~~ 602 (771)
|+. +.+. ++|.. -|.-+ ....|-.. +.+...| |.-+......+..++--|...
T Consensus 79 ir~-------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~i 139 (273)
T COG4455 79 IRC-------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPI 139 (273)
T ss_pred HHH-------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCC
Confidence 432 1222 22321 23111 22345444 4444333 345556666777777777543
No 413
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=40.17 E-value=1.5e+02 Score=23.89 Aligned_cols=64 Identities=16% Similarity=0.121 Sum_probs=38.8
Q ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHH
Q 046775 15 LQVHGIVVFTGFDSDEFVANSLVVMYAKCGNFIDSRRLFDAIPERSVVSWNSLFSCYVHCDFLEEA 80 (771)
Q Consensus 15 ~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~A 80 (771)
..++..++..|+-.+ .-...+-..-...|+.+.|+++++.++ +.+-.|...++++...|.-.-|
T Consensus 22 ~~v~d~ll~~~ilT~-~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLLTE-EDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCCCH-HHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 345556666554221 112222222224578888888888888 7777888888888777765444
No 414
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=40.13 E-value=2.8e+02 Score=28.40 Aligned_cols=165 Identities=12% Similarity=0.166 Sum_probs=80.7
Q ss_pred cccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC--hhHH--HHHHHHHHHcCChHHHHH
Q 046775 411 NLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPDRG--IVSW--SAMIGGLAQHGRGKEALQ 486 (771)
Q Consensus 411 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~--~~~~--~~li~~~~~~g~~~~A~~ 486 (771)
....+.+|..++..+.+.+ ...| -+..+...--...+.+.++| +.+| ..+..+-.+.|+..+|.+
T Consensus 228 Ea~Ti~~AE~l~k~ALka~----e~~y-------r~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K 296 (556)
T KOG3807|consen 228 EATTIVDAERLFKQALKAG----ETIY-------RQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVK 296 (556)
T ss_pred hhhhHHHHHHHHHHHHHHH----HHHH-------hhHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHH
Confidence 3345667788888877765 1122 22222222222233444555 3333 345555667899999999
Q ss_pred HHHHHHHCCCCCCHHH----HHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC
Q 046775 487 MFGQMLEDGVLPNHIT----LVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTM 562 (771)
Q Consensus 487 l~~~m~~~g~~pd~~t----~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m 562 (771)
.|+++.++ .| ..| -..++.+|....-+.+...++-+..+. . .|...+ -|.-.++.+ +..+-++
T Consensus 297 ~~RDL~ke--~p-l~t~lniheNLiEalLE~QAYADvqavLakYDdi-s-lPkSA~-icYTaALLK------~RAVa~k- 363 (556)
T KOG3807|consen 297 IMRDLMKE--FP-LLTMLNIHENLLEALLELQAYADVQAVLAKYDDI-S-LPKSAA-ICYTAALLK------TRAVSEK- 363 (556)
T ss_pred HHHHHhhh--cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c-CcchHH-HHHHHHHHH------HHHHHhh-
Confidence 99888774 33 222 234566665554444444443332211 1 222111 122222221 2222222
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHH
Q 046775 563 PFQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHV 606 (771)
Q Consensus 563 ~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~ 606 (771)
+.||..+-..|-.| ---|.++..+++|.+|.-|....
T Consensus 364 -Fspd~asrRGLS~A------E~~AvEAihRAvEFNPHVPkYLL 400 (556)
T KOG3807|consen 364 -FSPETASRRGLSTA------EINAVEAIHRAVEFNPHVPKYLL 400 (556)
T ss_pred -cCchhhhhccccHH------HHHHHHHHHHHhhcCCCCcHHHH
Confidence 35655433222222 12366778888999997666544
No 415
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=39.75 E-value=60 Score=24.12 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 046775 499 NHITLVSVLCACNHAGLVAEAKHHFESMEK 528 (771)
Q Consensus 499 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 528 (771)
|-.--..++.++...|++++|.++.+.+.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333444556666666666666666665544
No 416
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=39.71 E-value=65 Score=22.04 Aligned_cols=25 Identities=16% Similarity=0.379 Sum_probs=15.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCC
Q 046775 471 MIGGLAQHGRGKEALQMFGQMLEDG 495 (771)
Q Consensus 471 li~~~~~~g~~~~A~~l~~~m~~~g 495 (771)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4456666666666666666666543
No 417
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=39.54 E-value=1.2e+02 Score=26.98 Aligned_cols=67 Identities=16% Similarity=0.109 Sum_probs=43.5
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHH
Q 046775 553 QEAMELVDTMPFQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVA 622 (771)
Q Consensus 553 ~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 622 (771)
+.|.++++-|. +..............|+...|..+++.++..+|+|..+-.+.+++|...|.-.+..
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~~ 124 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSENA 124 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SSH
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccCH
Confidence 45555555553 11222233344566899999999999999999999999999998887766544433
No 418
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=39.45 E-value=4.2e+02 Score=26.82 Aligned_cols=58 Identities=10% Similarity=0.132 Sum_probs=38.1
Q ss_pred CCCchHHHhHHHHHHHhcCCHHHHHHHHHhc-----CCCceecHHHHHHHHHHcCChHHHHHH
Q 046775 329 FESDDYIVNSLIDAYGKCGHVEDAVKIFKES-----SAVDLVACTSMITAYAQFGLGEEALKL 386 (771)
Q Consensus 329 ~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~l 386 (771)
-.++..+...++..+++.+++..-.++++.. +..|...|...|......|+..-...+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence 3555666666777777777777777777653 235677777777777777776544333
No 419
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=39.07 E-value=2.5e+02 Score=24.15 Aligned_cols=65 Identities=11% Similarity=0.101 Sum_probs=37.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHH----HHHHHHHh
Q 046775 539 YACMIDILGRAGKFQEAMELVDTMPFQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHV----LLSNIYAS 614 (771)
Q Consensus 539 y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~----~l~~~y~~ 614 (771)
+..|..++.+.|++++++.-- +.|...+++--+|+.+...-|+ .-+-.+..
T Consensus 58 hA~Ls~A~~~Lgry~e~L~sA-------------------------~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~ 112 (144)
T PF12968_consen 58 HAGLSGALAGLGRYDECLQSA-------------------------DRALRYFNRRGELHQDEGKLWIAAVFSRAVALEG 112 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHHH-------------------------HHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHH-------------------------HHHHHHHhhccccccccchhHHHHHHHHHHHHHh
Confidence 455666777777777765433 3345555555566665444444 33446778
Q ss_pred cCCchhHHHHHHHH
Q 046775 615 AGMWDNVAKVRRFM 628 (771)
Q Consensus 615 ~g~~~~a~~~~~~m 628 (771)
.|+.++|.+-++..
T Consensus 113 ~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 113 LGRKEEALKEFRMA 126 (144)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred cCChHHHHHHHHHH
Confidence 89999998877654
No 420
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=39.02 E-value=65 Score=27.32 Aligned_cols=72 Identities=17% Similarity=0.335 Sum_probs=48.4
Q ss_pred ceEEEcCEEEEEEeCCC-CccchHHHHHHHHHHHHHHHhcCcccCCccccCCcchhhhhhhhccccHHHHHHcccccCCC
Q 046775 640 SWIEVKDKVYTFTVGDR-SHARSKEIYAKLDEVSDLLNKAGYVPMVETDLHDVEESEKEQLLYHHSEKLAVAFGLIATPP 718 (771)
Q Consensus 640 s~i~~~~~~~~f~~~~~-~h~~~~~i~~~l~~l~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~ 718 (771)
+|++.+|.+-.|...+. .+|...++...|+++.+++... ..++.-|++++ ..||-.|++.+.|
T Consensus 22 ~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~-----v~f~kVdid~~----------~~la~~f~V~sIP- 85 (111)
T cd02965 22 DWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR-----FRAAVVGRADE----------QALAARFGVLRTP- 85 (111)
T ss_pred HHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc-----EEEEEEECCCC----------HHHHHHcCCCcCC-
Confidence 34455555555555554 8999999999999988765321 23334455542 4688899999998
Q ss_pred CCeEEEeeccc
Q 046775 719 GATIRVKKNLR 729 (771)
Q Consensus 719 ~~~~~~~kn~r 729 (771)
++.++||=+
T Consensus 86 --Tli~fkdGk 94 (111)
T cd02965 86 --ALLFFRDGR 94 (111)
T ss_pred --EEEEEECCE
Confidence 677777644
No 421
>PRK10941 hypothetical protein; Provisional
Probab=38.99 E-value=1.6e+02 Score=29.61 Aligned_cols=65 Identities=9% Similarity=0.031 Sum_probs=40.9
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHH
Q 046775 542 MIDILGRAGKFQEAMELVDTM-PFQAN-ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHV 606 (771)
Q Consensus 542 lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~ 606 (771)
+-..|.+.++++.|+...+.+ .+.|+ +.-|.--.-.+..-|....|..-++..++.-|+++.+-.
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 334556666666666666665 24454 335655556666777777777777777777777766543
No 422
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.54 E-value=7.3e+02 Score=29.34 Aligned_cols=50 Identities=16% Similarity=0.175 Sum_probs=29.3
Q ss_pred HhHHHHHHHhcCCHHHHHHHHHhcCCCceecHHHHHHHHHHcCChHHHHHHHHHH
Q 046775 336 VNSLIDAYGKCGHVEDAVKIFKESSAVDLVACTSMITAYAQFGLGEEALKLYLEM 390 (771)
Q Consensus 336 ~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 390 (771)
..+........|+.+.+..+-.-|.. |..++.-+.+.+.+++|++++..-
T Consensus 507 retv~~l~~~~~~~e~ll~fA~l~~d-----~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 507 RETVYQLLASHGRQEELLQFANLIKD-----YEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444455555665555444333322 455677778888888888877543
No 423
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=38.37 E-value=2.2e+02 Score=27.03 Aligned_cols=95 Identities=15% Similarity=0.090 Sum_probs=51.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHH
Q 046775 472 IGGLAQHGRGKEALQMFGQMLEDGVLPNH-----ITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDIL 546 (771)
Q Consensus 472 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l 546 (771)
..-+..+|++++|..-|.+.+.. ++|-. +.|..-..|..+.+.++.|+.--.+.. .+.|+-. .
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKai---el~pty~------k-- 169 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAI---ELNPTYE------K-- 169 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhH---hcCchhH------H--
Confidence 34567788888888888888874 23322 223333344555555555554443333 2233210 0
Q ss_pred hhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 046775 547 GRAGKFQEAMELVDTMPFQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEK 601 (771)
Q Consensus 547 ~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 601 (771)
...--.-++-....++.|..-++++++++|..
T Consensus 170 -----------------------Al~RRAeayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 170 -----------------------ALERRAEAYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred -----------------------HHHHHHHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence 11111223344456777888888888888854
No 424
>PF05119 Terminase_4: Phage terminase, small subunit; InterPro: IPR006448 This entry is represented by Streptococcus phage 7201, Orf21. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This group of sequences describe the distinct family of phage (and integrated prophage) putative terminase small subunit sequnces. Members tend to be encoded by the gene adjacent to the phage terminase large subunit gene.
Probab=37.49 E-value=92 Score=25.58 Aligned_cols=37 Identities=11% Similarity=0.210 Sum_probs=30.5
Q ss_pred CCCccchHHHHHHHHHHHHHHHhcCcccCCccccCCc
Q 046775 655 DRSHARSKEIYAKLDEVSDLLNKAGYVPMVETDLHDV 691 (771)
Q Consensus 655 ~~~h~~~~~i~~~l~~l~~~~~~~g~~p~~~~~~~~~ 691 (771)
-..||....+.....++.....+.|..|....-+-..
T Consensus 57 ~~~nP~~~~~~~~~~~~~~l~~~lGLtP~sR~kl~~~ 93 (100)
T PF05119_consen 57 PKKNPAVSILNKAMKQMRSLASELGLTPASRAKLAVP 93 (100)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHcCCCHHHHhhccCC
Confidence 6789999998888899999999999999876655443
No 425
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=37.48 E-value=37 Score=29.61 Aligned_cols=34 Identities=29% Similarity=0.445 Sum_probs=25.4
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046775 475 LAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCAC 510 (771)
Q Consensus 475 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 510 (771)
....|.-.+|-.+|++|++.|-+||. +..|+.++
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34456667899999999999999986 45555554
No 426
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=37.07 E-value=88 Score=25.47 Aligned_cols=52 Identities=8% Similarity=0.022 Sum_probs=34.9
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCC---------chhHHHHHHHHHhcCCchhHHHHHHHHHh
Q 046775 579 RIYKNVEVGQHAAEMLFAIEPEK---------SSTHVLLSNIYASAGMWDNVAKVRRFMKD 630 (771)
Q Consensus 579 ~~~~~~~~a~~~~~~~~~l~p~~---------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 630 (771)
...||...|...+.+.++....+ ..+...++.++...|++++|....++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34567777776666666643221 12345678889999999999888776543
No 427
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=36.73 E-value=5.5e+02 Score=27.33 Aligned_cols=31 Identities=10% Similarity=-0.170 Sum_probs=22.8
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 046775 474 GLAQHGRGKEALQMFGQMLEDGVLPNHITLV 504 (771)
Q Consensus 474 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 504 (771)
.+...+++..|.++|+++.+...+|+..++.
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~ 169 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVNHTFY 169 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhhhhHH
Confidence 4456788999999999999876666554433
No 428
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=36.10 E-value=87 Score=21.81 Aligned_cols=34 Identities=9% Similarity=0.175 Sum_probs=22.1
Q ss_pred HHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHH
Q 046775 71 YVHCDFLEEAVCFFKEMVLSGIRPNEFSLSSMIN 104 (771)
Q Consensus 71 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 104 (771)
..+.|-..++..++++|.+.|+..+...|..+++
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3455666677777777777777666666666554
No 429
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=35.43 E-value=63 Score=28.39 Aligned_cols=67 Identities=16% Similarity=0.213 Sum_probs=47.4
Q ss_pred CEEEEEEeCC-CCccchHHHHHHHHHHHHHHHhcCcccCCccccCCcchhhhhhhhccccHHHHHHcccccCCCCCeEEE
Q 046775 646 DKVYTFTVGD-RSHARSKEIYAKLDEVSDLLNKAGYVPMVETDLHDVEESEKEQLLYHHSEKLAVAFGLIATPPGATIRV 724 (771)
Q Consensus 646 ~~~~~f~~~~-~~h~~~~~i~~~l~~l~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~~~~~~~ 724 (771)
+..-.|..|| ..+|++..+--.|++|.+++.. . +..++--|+| +.+.||--||+.+.| ++-+
T Consensus 35 ~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~--~--~v~~akVDiD----------~~~~LA~~fgV~siP---TLl~ 97 (132)
T PRK11509 35 PDGVVLLSSDPKRTPEVSDNPVMIGELLREFPD--Y--TWQVAIADLE----------QSEAIGDRFGVFRFP---ATLV 97 (132)
T ss_pred CcEEEEeCCCCCcCCccccHHHHHHHHHHHhcC--C--ceEEEEEECC----------CCHHHHHHcCCccCC---EEEE
Confidence 3345688898 6789999999999999887631 1 1223334555 357899999999999 5666
Q ss_pred eeccc
Q 046775 725 KKNLR 729 (771)
Q Consensus 725 ~kn~r 729 (771)
+||=+
T Consensus 98 FkdGk 102 (132)
T PRK11509 98 FTGGN 102 (132)
T ss_pred EECCE
Confidence 66643
No 430
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=35.32 E-value=1.2e+02 Score=23.79 Aligned_cols=47 Identities=19% Similarity=0.081 Sum_probs=33.6
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHHHHHH
Q 046775 477 QHGRGKEALQMFGQMLEDGVLPNH--ITLVSVLCACNHAGLVAEAKHHF 523 (771)
Q Consensus 477 ~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~ 523 (771)
...+-++|+..|+..++.-..|.. .++..+..|++..|++.+.+++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556678888888888875333322 36777788888889888887763
No 431
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=35.09 E-value=2.9e+02 Score=26.99 Aligned_cols=52 Identities=21% Similarity=0.137 Sum_probs=32.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCH
Q 046775 437 GNSLVNMYAKCGSIDDADRAFSEIPDRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVL-PNH 500 (771)
Q Consensus 437 ~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~ 500 (771)
|...|+.|...|.- ..|.+.++.||- ....|+++.|+++.+-+++.|.. |+.
T Consensus 67 Y~p~V~g~L~~g~~-----------~qd~Vl~~~mvW-~~D~Gd~~~AL~ia~yAI~~~l~~Pd~ 119 (230)
T PHA02537 67 YLPWVEGVLAAGAG-----------YQDDVLMTVMVW-RFDIGDFDGALEIAEYALEHGLTMPDQ 119 (230)
T ss_pred hHHHHHHHHHcCCC-----------CCCCeeeEeeee-eeeccCHHHHHHHHHHHHHcCCCCCcc
Confidence 55556666555421 233333333333 34679999999999999998854 543
No 432
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=34.91 E-value=15 Score=20.08 Aligned_cols=10 Identities=20% Similarity=0.421 Sum_probs=6.4
Q ss_pred Cccchhhhhh
Q 046775 733 DCHTSFEFIS 742 (771)
Q Consensus 733 dch~~~k~~s 742 (771)
.-|.++|+||
T Consensus 11 glhe~ikli~ 20 (23)
T PF08225_consen 11 GLHEVIKLIN 20 (23)
T ss_pred HHHHHHHHHh
Confidence 3467777766
No 433
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=34.83 E-value=1.8e+02 Score=24.49 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=12.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHH
Q 046775 369 SMITAYAQFGLGEEALKLYLEM 390 (771)
Q Consensus 369 ~li~~~~~~g~~~~A~~l~~~m 390 (771)
.++..|...|+.++|...+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3455566666666666666665
No 434
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.67 E-value=4.5e+02 Score=25.75 Aligned_cols=17 Identities=18% Similarity=0.612 Sum_probs=10.2
Q ss_pred HHhcCCHHHHHHHHHhc
Q 046775 343 YGKCGHVEDAVKIFKES 359 (771)
Q Consensus 343 y~k~g~~~~A~~~f~~~ 359 (771)
++-.+++++|.++|.+.
T Consensus 24 fgg~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERA 40 (288)
T ss_pred cCCCcchHHHHHHHHHH
Confidence 34445677777776553
No 435
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=34.40 E-value=5.9e+02 Score=27.00 Aligned_cols=120 Identities=18% Similarity=0.176 Sum_probs=84.8
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCCCCCC------HhH--HHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC----Cchh
Q 046775 540 ACMIDILGRAGKFQEAMELVDTMPFQAN------ASV--WGALLGAARIYKNVEVGQHAAEMLFAI---EPE----KSST 604 (771)
Q Consensus 540 ~~lv~~l~r~g~~~eA~~~~~~m~~~p~------~~~--~~~ll~a~~~~~~~~~a~~~~~~~~~l---~p~----~~~~ 604 (771)
..+++.+-..|+.++|.+++.+.|++.- ..+ -.--+..|...+|+-+|....+++..- +|+ --..
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlky 214 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKY 214 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHH
Confidence 3456778899999999999999874421 111 111245788899999999888887653 232 1235
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHhCCCccCCccceEEEcCEEEEEEeCCCCcc
Q 046775 605 HVLLSNIYASAGMWDNVAKVRRFMKDNKLKKEPGMSWIEVKDKVYTFTVGDRSHA 659 (771)
Q Consensus 605 ~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~~~~h~ 659 (771)
|.++..++.+.+.+-++.+.++..-+-|-.|...--|+++--.+-.|..--...+
T Consensus 215 Y~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~~LAp~dn 269 (439)
T KOG1498|consen 215 YELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFCVLAPHDN 269 (439)
T ss_pred HHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEEeecCCCc
Confidence 7888999999999999999999998887666644558877666666765443333
No 436
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.05 E-value=2.8e+02 Score=27.51 Aligned_cols=89 Identities=19% Similarity=0.278 Sum_probs=51.0
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC------C--CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCchhH----HH
Q 046775 542 MIDILGRAGKFQEAMELVDTMP------F--QANASVWGALLGAARIYKNVEVGQHAAEMLFAI--EPEKSSTH----VL 607 (771)
Q Consensus 542 lv~~l~r~g~~~eA~~~~~~m~------~--~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l--~p~~~~~~----~~ 607 (771)
||....|.|++++.++.++++- + .-+.-..++.+..-...++.++-...++--++. +..|...| .-
T Consensus 71 miKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtK 150 (440)
T KOG1464|consen 71 MIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTK 150 (440)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccch
Confidence 3444555566665555555441 1 112224556666555666666666555554442 22333333 36
Q ss_pred HHHHHHhcCCchhHHHHHHHHHh
Q 046775 608 LSNIYASAGMWDNVAKVRRFMKD 630 (771)
Q Consensus 608 l~~~y~~~g~~~~a~~~~~~m~~ 630 (771)
|+++|...|.+....++.+.+..
T Consensus 151 Lgkl~fd~~e~~kl~KIlkqLh~ 173 (440)
T KOG1464|consen 151 LGKLYFDRGEYTKLQKILKQLHQ 173 (440)
T ss_pred HhhhheeHHHHHHHHHHHHHHHH
Confidence 88899988888888888777754
No 437
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=33.20 E-value=16 Score=27.31 Aligned_cols=20 Identities=20% Similarity=0.424 Sum_probs=15.9
Q ss_pred ceEEEecCCccccccCCccC
Q 046775 747 REIIVRDVNRFHHFRNGSCS 766 (771)
Q Consensus 747 r~i~~rd~~rfh~f~~g~cs 766 (771)
..|=+.|.+-.|+||||+-+
T Consensus 8 ksi~LkDGstvyiFKDGKMa 27 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMA 27 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EE
T ss_pred eeEecCCCCEEEEEcCCcee
Confidence 35778899999999999854
No 438
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=33.08 E-value=4.8e+02 Score=25.62 Aligned_cols=184 Identities=16% Similarity=0.096 Sum_probs=91.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhh-
Q 046775 471 MIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNH-AGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGR- 548 (771)
Q Consensus 471 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~-~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r- 548 (771)
|+..+-+.|+++++++.++++...+...+..--+.+-.||-+ -|....+++.+..+.....-..+ .....++.-|-.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~k 85 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKKK 85 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHHH
Confidence 556667888888888888888887655554433333334322 24445566666665544222222 122222221110
Q ss_pred c-----CCHHHHHHHHHhC--CC--CCCHhH-HHHH-HHHHHh-----cC-----CHHHHHHHHHHHHh-----cCCCCc
Q 046775 549 A-----GKFQEAMELVDTM--PF--QANASV-WGAL-LGAARI-----YK-----NVEVGQHAAEMLFA-----IEPEKS 602 (771)
Q Consensus 549 ~-----g~~~eA~~~~~~m--~~--~p~~~~-~~~l-l~a~~~-----~~-----~~~~a~~~~~~~~~-----l~p~~~ 602 (771)
. .--.+...+++.- |. .+...+ |.-+ ...+|- .| -.+.|..+++.+.+ +.|.+|
T Consensus 86 ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p 165 (236)
T PF00244_consen 86 IEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHP 165 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCc
Confidence 0 0113455555553 21 122222 2221 112221 11 24677777777766 577777
Q ss_pred hhHHHHHH----HHHhcCCchhHHHHHHHHHhCCCccCCccceEEEcCEEEEEEeCCCCccchHHHHHHHH
Q 046775 603 STHVLLSN----IYASAGMWDNVAKVRRFMKDNKLKKEPGMSWIEVKDKVYTFTVGDRSHARSKEIYAKLD 669 (771)
Q Consensus 603 ~~~~~l~~----~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~~~~h~~~~~i~~~l~ 669 (771)
.-+-+..| .|--.|+.++|.++-+..-+..+....+ .++.+++.+..|.+.|.
T Consensus 166 ~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~--------------l~e~~~~d~~~ilqlLr 222 (236)
T PF00244_consen 166 LRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDT--------------LSEESYKDSTLILQLLR 222 (236)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGG--------------SHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcc--------------cchhhhHHHHHHHHHHH
Confidence 65443332 3456899999999888776655433221 13455666666655544
No 439
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.02 E-value=9.3e+02 Score=28.88 Aligned_cols=213 Identities=19% Similarity=0.231 Sum_probs=103.2
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 046775 366 ACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYA 445 (771)
Q Consensus 366 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~ 445 (771)
-|..|+.-|...|..++|++++.+....--.-|... .+.-..+.+++.+.+- ++. .|+--|+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~-------------~~~~e~ii~YL~~l~~-~~~----~Li~~y~ 567 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQ-------------LDGLEKIIEYLKKLGA-ENL----DLILEYA 567 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccch-------------hhhHHHHHHHHHHhcc-cch----hHHHHHh
Confidence 478899999999999999999998876310011110 1111224444444442 211 1121221
Q ss_pred ---hcCCHHHHHHHHhhCCCCChhHHH-HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--------
Q 046775 446 ---KCGSIDDADRAFSEIPDRGIVSWS-AMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHA-------- 513 (771)
Q Consensus 446 ---k~g~~~~A~~~f~~~~~~~~~~~~-~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~-------- 513 (771)
-..+.+...++|-.-......+.+ .-+-.|......+-++.+++.+....-.++..-.+.++.-|...
T Consensus 568 ~wvl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~ 647 (877)
T KOG2063|consen 568 DWVLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTD 647 (877)
T ss_pred hhhhccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCch
Confidence 234455556666541110111111 12334556667777788888887765555555455554444321
Q ss_pred CcHHHHHHH-----HHHHHH-hhCCCCC--------cchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 046775 514 GLVAEAKHH-----FESMEK-KFGIQPM--------QEHYACMIDILGRAGKFQEAMELVDTMPFQANASVWGALLGAAR 579 (771)
Q Consensus 514 g~~~~a~~~-----~~~m~~-~~~i~p~--------~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~ 579 (771)
++-+++.+. ...+.+ ...+.|. ...|.-..-.++|.|+-++|+.++-..
T Consensus 648 ~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~----------------- 710 (877)
T KOG2063|consen 648 GKGEEAPETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHE----------------- 710 (877)
T ss_pred hccccchhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHH-----------------
Confidence 111222222 111111 1122332 233444445677888888888876532
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 046775 580 IYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYAS 614 (771)
Q Consensus 580 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 614 (771)
-+|++.|+.......+-++.+...|..|..+|-.
T Consensus 711 -L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~ 744 (877)
T KOG2063|consen 711 -LDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLN 744 (877)
T ss_pred -hcchhHHHHHHHHhccCCCcccHHHHHHHHHHhc
Confidence 2344455555555544333344555544444443
No 440
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=32.92 E-value=58 Score=23.96 Aligned_cols=29 Identities=21% Similarity=0.538 Sum_probs=24.9
Q ss_pred CCCCccchHHHHHHHHHHHHHHHhcCccc
Q 046775 654 GDRSHARSKEIYAKLDEVSDLLNKAGYVP 682 (771)
Q Consensus 654 ~~~~h~~~~~i~~~l~~l~~~~~~~g~~p 682 (771)
|--+-.+++.|...++.-...+.+.||+|
T Consensus 31 G~iTqeqAd~ik~~id~~~~~~~qnGf~p 59 (59)
T PF10925_consen 31 GVITQEQADAIKKHIDQRQEYMQQNGFVP 59 (59)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 44556788999999999999999999998
No 441
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=32.83 E-value=54 Score=24.38 Aligned_cols=26 Identities=27% Similarity=0.311 Sum_probs=19.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 046775 468 WSAMIGGLAQHGRGKEALQMFGQMLE 493 (771)
Q Consensus 468 ~~~li~~~~~~g~~~~A~~l~~~m~~ 493 (771)
--..|.||.+.|++++|.++.+++..
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34568888888888888888887765
No 442
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=32.71 E-value=53 Score=28.69 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=24.6
Q ss_pred hCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHh
Q 046775 174 LHEHNDWALKLFQQMKSSEINPNMFTYTSALKAC 207 (771)
Q Consensus 174 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 207 (771)
..|.-.+|-.+|+.|++.|-+||. ++.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 346677899999999999998884 66666554
No 443
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=32.67 E-value=2.5e+02 Score=28.17 Aligned_cols=86 Identities=8% Similarity=0.101 Sum_probs=39.3
Q ss_pred HHHHHHhCCChhHHHHHHHHhHHC--CCCCCcchHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHh-
Q 046775 67 LFSCYVHCDFLEEAVCFFKEMVLS--GIRPNEFSLSSMINACAGSGDSLLGRKIHGYSIKLGYDSDMFSANALVDMYAK- 143 (771)
Q Consensus 67 li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~- 143 (771)
=|.+++..+++.+++...-+--+. .++|.. ...-|-.|++.+......++-..-++..-..+..-|.++...|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 367788888888877665443321 122221 222222344555555555544444433222222234444444433
Q ss_pred ----cCChhHHHHHH
Q 046775 144 ----VGNLEDAVAVF 154 (771)
Q Consensus 144 ----~g~~~~A~~~f 154 (771)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 24444444443
No 444
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=32.33 E-value=22 Score=29.43 Aligned_cols=32 Identities=28% Similarity=0.295 Sum_probs=20.3
Q ss_pred eeccccccCc-cchhhhhhhhhcceEEEecCCc
Q 046775 725 KKNLRICVDC-HTSFEFISKIVSREIIVRDVNR 756 (771)
Q Consensus 725 ~kn~r~c~dc-h~~~k~~s~~~~r~i~~rd~~r 756 (771)
.-++-||.+| |.|.+--.....-..++||+|-
T Consensus 16 dg~~~iCpeC~~EW~~~~~~~~~~~~~~kDsnG 48 (109)
T TIGR00686 16 DGTQLICPSCLYEWNENEVNDDDDELIVKDCNG 48 (109)
T ss_pred cCCeeECccccccccccccccccCCceEEcCCC
Confidence 3478899999 7777653222222257899873
No 445
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=32.18 E-value=1.4e+02 Score=20.75 Aligned_cols=33 Identities=6% Similarity=-0.039 Sum_probs=20.5
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 046775 173 VLHEHNDWALKLFQQMKSSEINPNMFTYTSALK 205 (771)
Q Consensus 173 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 205 (771)
.+.|...++..++++|.+.|+..+...|..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666666677777766666666555555543
No 446
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=32.12 E-value=8e+02 Score=27.88 Aligned_cols=126 Identities=17% Similarity=0.234 Sum_probs=59.0
Q ss_pred ccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH-------------------HHHHHhhCCCCChhHHHHHH
Q 046775 412 LSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDD-------------------ADRAFSEIPDRGIVSWSAMI 472 (771)
Q Consensus 412 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~-------------------A~~~f~~~~~~~~~~~~~li 472 (771)
.|++..+.+..... ..|..+...+.+...++|-++. |..++. +...|..-+
T Consensus 310 ~~d~~~vL~~~~~~-----~~~~w~aahladLl~~~g~L~~~~~~~~~~~~lre~~ll~YA~~L~s-----~~~lW~vai 379 (566)
T PF07575_consen 310 EGDIESVLKEISSL-----FDDWWFAAHLADLLEHKGLLEDSEQEDFGGSSLREYLLLEYASSLMS-----HHSLWQVAI 379 (566)
T ss_dssp TS--GGGHHHHHHH-------HHHHHHHHHHHHHHTTSS--SS-----TS-HHHHHHHHHHHHHHT------TTTHHHHH
T ss_pred ccCHHHHHHHHHHH-----ccchhHHHHHHHHHHhcCccccccccccccccHHHHHHHHHHHHHhc-----CcchHHHHH
Confidence 45555555444332 2344556667777777776651 111111 223455555
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCH
Q 046775 473 GGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKF 552 (771)
Q Consensus 473 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~ 552 (771)
.-+...++.. ....++++..-.-.+...-.-++..|...|+.+.+..+.+.+..+. -....|+.-+..+.|+|+.
T Consensus 380 ~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~---~~~~~~g~AL~~~~ra~d~ 454 (566)
T PF07575_consen 380 GYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRL---LKEGRYGEALSWFIRAGDY 454 (566)
T ss_dssp HHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-----
T ss_pred HHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---HHCCCHHHHHHHHHHCCCH
Confidence 5444444322 4444444443222345567778889999999999999888776541 1122344444444455544
No 447
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=31.88 E-value=4.3e+02 Score=26.62 Aligned_cols=19 Identities=32% Similarity=0.324 Sum_probs=12.3
Q ss_pred HHHHHHcCChHHHHHHHHH
Q 046775 371 ITAYAQFGLGEEALKLYLE 389 (771)
Q Consensus 371 i~~~~~~g~~~~A~~l~~~ 389 (771)
|.+++..+++.+++...-+
T Consensus 90 IQALAEmnrWreVLsWvlq 108 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQ 108 (309)
T ss_pred HHHHHHHhhHHHHHHHHHH
Confidence 6667777777777665433
No 448
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=31.67 E-value=52 Score=25.69 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHhcCcccCCccc
Q 046775 661 SKEIYAKLDEVSDLLNKAGYVPMVETD 687 (771)
Q Consensus 661 ~~~i~~~l~~l~~~~~~~g~~p~~~~~ 687 (771)
..+|.+.+++-..+++..||.||.-.+
T Consensus 7 li~il~~ie~~inELk~dG~ePDivL~ 33 (85)
T PF08967_consen 7 LIRILELIEEKINELKEDGFEPDIVLV 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTT----EEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 356778888888999999999997553
No 449
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=31.32 E-value=2.7e+02 Score=24.20 Aligned_cols=60 Identities=17% Similarity=0.315 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHH
Q 046775 483 EALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMID 544 (771)
Q Consensus 483 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~ 544 (771)
+..+-++.+....+-|+.-..-.-|.||.+.+++..|..+|+.++.+ ..+....|..+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHHH
Confidence 34444556666678899999999999999999999999999998754 3444445766654
No 450
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=30.93 E-value=5.5e+02 Score=25.64 Aligned_cols=89 Identities=16% Similarity=0.134 Sum_probs=43.0
Q ss_pred HHhCCChhHHHHHHHHH----HHCCCCCCHhhHHHHHHHHhccCChh-HHHHHHHHHHH---hc--CCCchHHHhHHHHH
Q 046775 273 HLQNGGDMEAASLFPWM----YREGVGFDQTTLSTVLKSVASFQAIG-VCKQVHALSVK---TA--FESDDYIVNSLIDA 342 (771)
Q Consensus 273 ~~~~g~~~~A~~~~~~m----~~~g~~pd~~t~~~ll~a~~~~~~~~-~a~~i~~~~~~---~g--~~~~~~~~~~Li~~ 342 (771)
+.+.|+...|.++-.-| .+.+.++|......++..+...+.-+ .-.++...+++ .| -..|+.....+...
T Consensus 20 ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~ 99 (260)
T PF04190_consen 20 LLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEK 99 (260)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHH
Confidence 44555554444433332 33466666665555555554443211 22233333332 22 23466777888888
Q ss_pred HHhcCCHHHHHHHHHhcCC
Q 046775 343 YGKCGHVEDAVKIFKESSA 361 (771)
Q Consensus 343 y~k~g~~~~A~~~f~~~~~ 361 (771)
|.+.|++.+|+..|-.-..
T Consensus 100 ~~~e~~~~~A~~Hfl~~~~ 118 (260)
T PF04190_consen 100 LWKEGNYYEAERHFLLGTD 118 (260)
T ss_dssp HHHTT-HHHHHHHHHTS-H
T ss_pred HHhhccHHHHHHHHHhcCC
Confidence 9999999998887754433
No 451
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=30.92 E-value=1.5e+02 Score=23.62 Aligned_cols=61 Identities=10% Similarity=0.070 Sum_probs=41.7
Q ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhH
Q 046775 15 LQVHGIVVFTGFDSDEFVANSLVVMYAKCGNFIDSRRLFDAIPERSVVSWNSLFSCYVHCDFLEE 79 (771)
Q Consensus 15 ~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~ 79 (771)
..+...+++.|+- +..-.=..-+...+.+.|.++.+.+|.+...+|.+...++...|...-
T Consensus 19 ~~v~~~L~~~~Vl----t~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~L 79 (84)
T cd08326 19 KYLWDHLLSRGVF----TPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDL 79 (84)
T ss_pred HHHHHHHHhcCCC----CHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHH
Confidence 3466666666643 222222334455678889999999999999999998888887775443
No 452
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=30.07 E-value=94 Score=31.46 Aligned_cols=41 Identities=17% Similarity=0.250 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046775 467 SWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVL 507 (771)
Q Consensus 467 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 507 (771)
-||..|..-.+.|+.++|+.+++|..+.|+.--..||..-+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 47789999999999999999999999999876666666544
No 453
>PF01147 Crust_neurohorm: Crustacean CHH/MIH/GIH neurohormone family; InterPro: IPR001166 Arthropod express a family of neuropeptides [] which so far consist of the following types of neurohormones: Crustacean hyperglycemic hormone (CHH). CHH is primarily involved in blood sugar regulation, but also plays a role in the control of molting and reproduction. Molt-inhibiting hormone (MIH). MIH inhibits Y-organs where molting hormone (ecdysteroid) is secreted. A molting cycle is initiated when MIH secretion diminishes or stops. Gonad-inhibiting hormone (GIH), also known as vitellogenesis-inhibiting hormone (VIH) because of its role in inhibiting vitellogenesis in female animals. Mandibular organ-inhibiting hormone (MOIH). MOIH represses the synthesis of methyl farnesoate, the precursor of insect juvenile hormone III in the mandibular organ. Ion transport peptide (ITP) from locust. ITP stimulates salt and water reabsorption and inhibits acid secretion in the ileum of the locust. Caenorhabditis elegans hypothetical protein ZC168.2. These neurohormones are peptides of 70 to 80 residues which are processed from larger size precursors. They contain six conserved cysteines that are involved in disulphide bonds, as shown in the following schematic representation. ; GO: 0005184 neuropeptide hormone activity, 0005576 extracellular region; PDB: 1J0T_A.
Probab=29.99 E-value=8.8 Score=29.45 Aligned_cols=14 Identities=43% Similarity=0.771 Sum_probs=11.2
Q ss_pred eccccccCccchhh
Q 046775 726 KNLRICVDCHTSFE 739 (771)
Q Consensus 726 kn~r~c~dch~~~k 739 (771)
|--|||.|||+...
T Consensus 18 kldrVC~DCyNl~R 31 (73)
T PF01147_consen 18 KLDRVCDDCYNLFR 31 (73)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 45699999998754
No 454
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=29.65 E-value=3.3e+02 Score=28.43 Aligned_cols=82 Identities=24% Similarity=0.295 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCCccceEEEcCEEEEEEeCCCCcc--chH
Q 046775 585 EVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDNKLKKEPGMSWIEVKDKVYTFTVGDRSHA--RSK 662 (771)
Q Consensus 585 ~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~~~~h~--~~~ 662 (771)
|...+++.++--.+|+|+.+...++ |.++.++++++|-. +|+ ..++|+.... ...
T Consensus 28 e~vl~AA~~l~laDPeDSD~N~if~-----------avkiydeL~~~Ged-------veV-----A~VsG~~~~~v~ad~ 84 (344)
T PF04123_consen 28 EAVLDAAVKLALADPEDSDVNAIFG-----------AVKIYDELKAEGED-------VEV-----AVVSGSPDVGVEADR 84 (344)
T ss_pred HHHHHHHHHHhcCCcccccHHHHHH-----------HHHHHHHHHhcCCC-------eEE-----EEEECCCCCchhhHH
Confidence 3445666777778999999877664 88999999988742 222 5677876543 235
Q ss_pred HHHHHHHHHHHHHHhcCcccCCccccCCcchh
Q 046775 663 EIYAKLDEVSDLLNKAGYVPMVETDLHDVEES 694 (771)
Q Consensus 663 ~i~~~l~~l~~~~~~~g~~p~~~~~~~~~~~~ 694 (771)
+|.++|+++.. .|.||.-.+.-|=.|+
T Consensus 85 ~I~~qld~vl~-----~~~~~~~i~VsDGaeD 111 (344)
T PF04123_consen 85 KIAEQLDEVLS-----KFDPDSAIVVSDGAED 111 (344)
T ss_pred HHHHHHHHHHH-----hCCCCEEEEEecChhh
Confidence 56666666554 3566655555554444
No 455
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=29.63 E-value=3.2e+02 Score=31.08 Aligned_cols=30 Identities=20% Similarity=0.073 Sum_probs=0.0
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 046775 276 NGGDMEAASLFPWMYREGVGFDQTTLSTVL 305 (771)
Q Consensus 276 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll 305 (771)
.|+..+|.+.+-.+....+.|..+-...+.
T Consensus 508 ~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~ 537 (566)
T PF07575_consen 508 EGDFREAASLLVSLLKSPIAPKSFWPLLLC 537 (566)
T ss_dssp ------------------------------
T ss_pred hhhHHHHHHHHHHHHCCCCCcHHHHHHHHH
Confidence 355666666666666555555555444443
No 456
>PF14376 Haem_bd: Haem-binding domain
Probab=29.61 E-value=20 Score=31.83 Aligned_cols=10 Identities=40% Similarity=1.046 Sum_probs=7.9
Q ss_pred cccccCccch
Q 046775 728 LRICVDCHTS 737 (771)
Q Consensus 728 ~r~c~dch~~ 737 (771)
-+-|.||||-
T Consensus 41 ~~~CydCHSn 50 (137)
T PF14376_consen 41 KNSCYDCHSN 50 (137)
T ss_pred HccccccCCC
Confidence 3579999973
No 457
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=29.55 E-value=5e+02 Score=28.35 Aligned_cols=141 Identities=13% Similarity=0.058 Sum_probs=0.0
Q ss_pred HHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCChhH--------HHHHHH
Q 046775 406 LNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIP----DRGIVS--------WSAMIG 473 (771)
Q Consensus 406 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~----~~~~~~--------~~~li~ 473 (771)
++++.+..++..++.-...+.... ..+....-.--..+.-.|++.+|.+++.... .-...| ||.|..
T Consensus 213 Vr~llq~~~Lk~~krevK~vmn~a-~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGc 291 (696)
T KOG2471|consen 213 VRFLLQTRNLKLAKREVKHVMNIA-QDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGC 291 (696)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhc-CCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcce
Q ss_pred HHHHcCChHHHHHHHHHHHH-------CCCCCCH----------HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCc
Q 046775 474 GLAQHGRGKEALQMFGQMLE-------DGVLPNH----------ITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQ 536 (771)
Q Consensus 474 ~~~~~g~~~~A~~l~~~m~~-------~g~~pd~----------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~ 536 (771)
.+.+.|.+.-+..+|.+.++ .|++|.. .......-.+.|.|++-.|.+.|....+.| ..++
T Consensus 292 Ih~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf--h~nP 369 (696)
T KOG2471|consen 292 IHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF--HRNP 369 (696)
T ss_pred EeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH--hcCc
Q ss_pred chHHHHHHHHhhc
Q 046775 537 EHYACMIDILGRA 549 (771)
Q Consensus 537 ~~y~~lv~~l~r~ 549 (771)
..|--|...+..+
T Consensus 370 rlWLRlAEcCima 382 (696)
T KOG2471|consen 370 RLWLRLAECCIMA 382 (696)
T ss_pred HHHHHHHHHHHHH
No 458
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=29.42 E-value=6.3e+02 Score=25.86 Aligned_cols=89 Identities=18% Similarity=0.072 Sum_probs=60.3
Q ss_pred HHhccCcHHHHHHHHHHHHHhhCC---CCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHH
Q 046775 509 ACNHAGLVAEAKHHFESMEKKFGI---QPMQEHYACMIDILGRAGKFQEAMELVDTMPFQANASVWGALLGAARIYKNVE 585 (771)
Q Consensus 509 a~~~~g~~~~a~~~~~~m~~~~~i---~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~ 585 (771)
+|.+.+-.+++.+.|+.......- ..+......+.....+.|..++-..+++.....++...-..++.+..-..|.+
T Consensus 139 a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~ 218 (324)
T PF11838_consen 139 ACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPE 218 (324)
T ss_dssp HHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HH
T ss_pred hccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHH
Confidence 454455578899999988764111 33455666777777888887766666666655667778888899888888999
Q ss_pred HHHHHHHHHHhc
Q 046775 586 VGQHAAEMLFAI 597 (771)
Q Consensus 586 ~a~~~~~~~~~l 597 (771)
.-.++.+.++.-
T Consensus 219 ~~~~~l~~~l~~ 230 (324)
T PF11838_consen 219 LLKRLLDLLLSN 230 (324)
T ss_dssp HHHHHHHHHHCT
T ss_pred HHHHHHHHHcCC
Confidence 989999999883
No 459
>PF13971 Mei4: Meiosis-specific protein Mei4
Probab=29.37 E-value=16 Score=37.98 Aligned_cols=30 Identities=33% Similarity=0.572 Sum_probs=20.9
Q ss_pred hhhhhccccHHHHHHccccc-CCCCCeEEEe
Q 046775 696 KEQLLYHHSEKLAVAFGLIA-TPPGATIRVK 725 (771)
Q Consensus 696 ~~~~~~~hse~la~~~~~~~-~~~~~~~~~~ 725 (771)
++..-..+.=|||+|+++|. .|||+..|..
T Consensus 12 ~~~~wyl~tsKlAlAlAIIrsKPpg~s~Rey 42 (375)
T PF13971_consen 12 QQLSWYLKTSKLALALAIIRSKPPGKSSREY 42 (375)
T ss_pred cchhHHHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence 34344456779999999996 5678765543
No 460
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=29.29 E-value=1.1e+02 Score=30.82 Aligned_cols=57 Identities=11% Similarity=0.137 Sum_probs=43.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHh
Q 046775 134 ANALVDMYAKVGNLEDAVAVFKDIEH---PDIVSWNAVIAGCVLHEHNDWALKLFQQMKS 190 (771)
Q Consensus 134 ~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~ 190 (771)
.+.....|..+|.+.+|.++-+.... -+...|-.++..++..|+--.+.+-+++|.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 45556778888888888888877665 3556788888888888888888888877753
No 461
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=29.12 E-value=5.2e+02 Score=26.06 Aligned_cols=125 Identities=14% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHhcCCCCCCH-------hhHHHHHHHhhcccchHHHHHHHH----HHHHhCCCCchhHHH
Q 046775 370 MITAYAQFGLGEEALKLYLEMQDREINPDS-------FVCSSLLNACANLSAYEQGKQVHV----HIIKFGFMSDTFAGN 438 (771)
Q Consensus 370 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~a~~~~~~~~~a~~i~~----~~~~~g~~~~~~~~~ 438 (771)
+..-..+.++.++|+..+.+....|+..|. .|...+...|.+.|+...-.+... .|....-+..+.+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Q ss_pred HHHHHH-HhcCCHHHHHHHHhhCCCCC---------hhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 046775 439 SLVNMY-AKCGSIDDADRAFSEIPDRG---------IVSWSAMIGGLAQHGRGKEALQMFGQMLED 494 (771)
Q Consensus 439 ~Li~~y-~k~g~~~~A~~~f~~~~~~~---------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 494 (771)
+|++++ ....+++.-..+.....+.- ...=.-+|..+.+.|++.+|+.+...+..+
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~E 154 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHE 154 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
No 462
>COG5431 Uncharacterized metal-binding protein [Function unknown]
Probab=28.92 E-value=17 Score=29.67 Aligned_cols=11 Identities=36% Similarity=1.072 Sum_probs=8.9
Q ss_pred ccCCccCCCCC
Q 046775 760 FRNGSCSCGGY 770 (771)
Q Consensus 760 f~~g~csc~d~ 770 (771)
-..|-|||.||
T Consensus 47 l~~gfCSCp~~ 57 (117)
T COG5431 47 LEGGFCSCPDF 57 (117)
T ss_pred EEcCcccCHHH
Confidence 46789999886
No 463
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=28.81 E-value=6.3e+02 Score=25.63 Aligned_cols=53 Identities=9% Similarity=0.105 Sum_probs=34.3
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCChhHHHHHHHHHHHcCChHH
Q 046775 431 MSDTFAGNSLVNMYAKCGSIDDADRAFSEIP-----DRGIVSWSAMIGGLAQHGRGKE 483 (771)
Q Consensus 431 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~~ 483 (771)
.++..+...+++.+++.+++.+-.++++... ..|...|..+|..-..+|+..-
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~ 256 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEV 256 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHH
Confidence 4555666666777777777777666666443 3456677777777777777543
No 464
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=28.66 E-value=2.9e+02 Score=26.28 Aligned_cols=89 Identities=13% Similarity=0.106 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH-HHHHHhcCCchhHHHHHHHHHhC-CCccCCccceEEEcCE
Q 046775 570 VWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLL-SNIYASAGMWDNVAKVRRFMKDN-KLKKEPGMSWIEVKDK 647 (771)
Q Consensus 570 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l-~~~y~~~g~~~~a~~~~~~m~~~-g~~k~~g~s~i~~~~~ 647 (771)
...+++..|-..||.+.|.+++--+++..+-|.....-+ +.|+...+.-....+.++.|... ..++.- ...+...+.
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~~~~-~~~~~~~~~ 121 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYPSRKAF-NQYYNRRII 121 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhc-cchhhhhcc
Confidence 567788888888888888888888888877666554444 35666666655554555555321 111100 001112224
Q ss_pred EEEEEeCCCCcc
Q 046775 648 VYTFTVGDRSHA 659 (771)
Q Consensus 648 ~~~f~~~~~~h~ 659 (771)
.+.|.+|.+.|-
T Consensus 122 ~pvfrsGs~t~t 133 (199)
T PF04090_consen 122 APVFRSGSRTHT 133 (199)
T ss_pred cccccCCCcccc
Confidence 578999999883
No 465
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.59 E-value=6.5e+02 Score=29.78 Aligned_cols=130 Identities=14% Similarity=0.182 Sum_probs=85.4
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 046775 442 NMYAKCGSIDDADRAFSEIPDRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKH 521 (771)
Q Consensus 442 ~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 521 (771)
+....||+++.|.+.-..+.++ ..|..|...-...|+.+-|.-.|++... |.-|--.|.-.|+.++-.+
T Consensus 651 ~LaLe~gnle~ale~akkldd~--d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~K 719 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKLDDK--DVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSK 719 (1202)
T ss_pred eeehhcCCHHHHHHHHHhcCcH--HHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHH
Confidence 3456899999999987776654 5799999999999999999999988765 2333334556788777665
Q ss_pred HHHHHHHhhCCCCCc-chHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046775 522 HFESMEKKFGIQPMQ-EHYACMIDILGRAGKFQEAMELVDTMPFQANASVWGALLGAARIYKNVEVGQHAAEMLFA 596 (771)
Q Consensus 522 ~~~~m~~~~~i~p~~-~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~ 596 (771)
+-+... ++-|. .+|.. .+ -.|+.+|=.++++....-|-+ | + .-..||.-+.|++..+.+-.
T Consensus 720 m~~iae----~r~D~~~~~qn--al--Yl~dv~ervkIl~n~g~~~la--y---l-ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 720 MMKIAE----IRNDATGQFQN--AL--YLGDVKERVKILENGGQLPLA--Y---L-TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHH----hhhhhHHHHHH--HH--HhccHHHHHHHHHhcCcccHH--H---H-HHhhcCcHHHHHHHHHhhcc
Confidence 544432 22221 12211 11 247778877777776533322 1 1 22568888889888887765
No 466
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=28.57 E-value=1.2e+02 Score=19.14 Aligned_cols=26 Identities=8% Similarity=0.213 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHH
Q 046775 583 NVEVGQHAAEMLFAIEPEKSSTHVLLS 609 (771)
Q Consensus 583 ~~~~a~~~~~~~~~l~p~~~~~~~~l~ 609 (771)
.++.|..++++.+...| ++.+|+..+
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHH
Confidence 46788888888888887 566665443
No 467
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=28.06 E-value=1.2e+02 Score=32.20 Aligned_cols=84 Identities=17% Similarity=0.258 Sum_probs=38.4
Q ss_pred HHHHHHhCCCccCCccceEEEcCEEEEEEeCCCCccchHHHHHHHHHHHHHHHhcCcccCCcc---ccCCcchhhhhhhh
Q 046775 624 VRRFMKDNKLKKEPGMSWIEVKDKVYTFTVGDRSHARSKEIYAKLDEVSDLLNKAGYVPMVET---DLHDVEESEKEQLL 700 (771)
Q Consensus 624 ~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~~~~h~~~~~i~~~l~~l~~~~~~~g~~p~~~~---~~~~~~~~~~~~~~ 700 (771)
+|..|.+..+...+..|... .-| .+|...++|- +..+...++ ..||+--.-. .+|-+.+ ..+.-
T Consensus 309 yWqamiEeAiTr~esfsVmY-----tPf----atki~~d~ie-k~k~~F~k~-HPaY~~~IytD~~glHilPq--t~~ws 375 (569)
T PF15015_consen 309 YWQAMIEEAITRAESFSVMY-----TPF----ATKIKADKIE-KVKEVFTKT-HPAYVEYIYTDPQGLHILPQ--TADWS 375 (569)
T ss_pred HHHHHHHHHHhcccceeEEe-----ecc----cccccHHHHH-HHHHHHHhh-CccceeEEecccceeeeccc--cCCCC
Confidence 35566666666666555432 112 2366666664 333333222 2355522111 2333221 11112
Q ss_pred ccccHHHHHHcccccCCCCC
Q 046775 701 YHHSEKLAVAFGLIATPPGA 720 (771)
Q Consensus 701 ~~hse~la~~~~~~~~~~~~ 720 (771)
++-.+.-=...|+++...|+
T Consensus 376 ~~p~qqylltlGF~nke~gk 395 (569)
T PF15015_consen 376 SFPPQQYLLTLGFKNKEDGK 395 (569)
T ss_pred CCCHHHHHHHhcccccccch
Confidence 23335556677777776664
No 468
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=28.02 E-value=7.4e+02 Score=26.20 Aligned_cols=52 Identities=6% Similarity=0.006 Sum_probs=30.1
Q ss_pred HhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHH-hcCCHHHHHHHHhh
Q 046775 408 ACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYA-KCGSIDDADRAFSE 459 (771)
Q Consensus 408 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~-k~g~~~~A~~~f~~ 459 (771)
...+.|.+..|.++-+.+...+...|+.-.-..||.|+ ++++++--.++.+.
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~ 164 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSES 164 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHh
Confidence 44555666666666666666654446666666666664 45555555555554
No 469
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=27.73 E-value=4.1e+02 Score=23.08 Aligned_cols=80 Identities=16% Similarity=0.294 Sum_probs=49.2
Q ss_pred cCChHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCC
Q 046775 478 HGRGKEALQMFGQMLEDGVLP-----NHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGK 551 (771)
Q Consensus 478 ~g~~~~A~~l~~~m~~~g~~p-----d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~ 551 (771)
.|....-..++++.... +.+ |..-|..+=..|... .+++.++|..|... ||--. ...|......+...|+
T Consensus 39 ~~~~~~L~~lLer~~~~-f~~~~~Y~nD~RylkiWi~ya~~--~~~~~~if~~l~~~-~IG~~~A~fY~~wA~~le~~~~ 114 (126)
T PF08311_consen 39 GGKQSGLLELLERCIRK-FKDDERYKNDERYLKIWIKYADL--SSDPREIFKFLYSK-GIGTKLALFYEEWAEFLEKRGN 114 (126)
T ss_dssp CCCCHHHHHHHHHHHHH-HTTSGGGTT-HHHHHHHHHHHTT--BSHHHHHHHHHHHH-TTSTTBHHHHHHHHHHHHHTT-
T ss_pred CCchhHHHHHHHHHHHH-HhhhHhhcCCHHHHHHHHHHHHH--ccCHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHcCC
Confidence 34555555666665543 222 334444443334332 23888888888876 66555 5678888888888999
Q ss_pred HHHHHHHHHh
Q 046775 552 FQEAMELVDT 561 (771)
Q Consensus 552 ~~eA~~~~~~ 561 (771)
+++|.++++.
T Consensus 115 ~~~A~~I~~~ 124 (126)
T PF08311_consen 115 FKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999888764
No 470
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=26.83 E-value=2.2e+02 Score=22.70 Aligned_cols=61 Identities=18% Similarity=0.334 Sum_probs=38.8
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHH
Q 046775 420 QVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPDRGIVSWSAMIGGLAQHGRGKEA 484 (771)
Q Consensus 420 ~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 484 (771)
.++..+...|+-.. .-.-...+...+.+.|.++++.++.++..+|.+...++...|+..-|
T Consensus 20 ~v~~~L~~~~Vlt~----~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 20 YLWDHLLSRGVFTP----DMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHhcCCCCH----HHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 35555555553221 12222334556678888888888888888888888888877765544
No 471
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=26.71 E-value=5.5e+02 Score=24.28 Aligned_cols=50 Identities=12% Similarity=0.268 Sum_probs=27.8
Q ss_pred HhcCCHHHHHHHHhhCC------CCChhHHHHHHH-HHHHcCC--hHHHHHHHHHHHHC
Q 046775 445 AKCGSIDDADRAFSEIP------DRGIVSWSAMIG-GLAQHGR--GKEALQMFGQMLED 494 (771)
Q Consensus 445 ~k~g~~~~A~~~f~~~~------~~~~~~~~~li~-~~~~~g~--~~~A~~l~~~m~~~ 494 (771)
...|++++|..-++.+. ++-...|+.+.. +|+.++. +-+|..++.-....
T Consensus 40 ~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 40 LHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 34455666666655554 122345666555 6777765 44666666655544
No 472
>PRK14700 recombination factor protein RarA; Provisional
Probab=26.67 E-value=5.4e+02 Score=26.27 Aligned_cols=69 Identities=10% Similarity=-0.020 Sum_probs=48.3
Q ss_pred CeehHHHHHHHHHhC---CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCC-----hhHHHHHHHHHHHhcCC
Q 046775 262 NLIAWNIVISGHLQN---GGDMEAASLFPWMYREGVGFDQTTLSTVLKSVASFQA-----IGVCKQVHALSVKTAFE 330 (771)
Q Consensus 262 ~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~-----~~~a~~i~~~~~~~g~~ 330 (771)
+-..+-.+|+++.++ .+++.|+-.+-+|.+.|..|....-..++.|.-..|. +..+...++.....|++
T Consensus 122 ~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~P 198 (300)
T PRK14700 122 EGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMP 198 (300)
T ss_pred CcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCh
Confidence 333445567777654 7899999999999999999988888888888777663 33444444555555543
No 473
>PF07255 Benyvirus_14KDa: Benyvirus 14KDa protein; InterPro: IPR009884 This family consists of several Benyvirus specific 14 kDa proteins of around 125 residues in length. Members of this family contain 9 conserved cysteine residues. The function of this family is unknown.
Probab=26.25 E-value=25 Score=28.25 Aligned_cols=28 Identities=36% Similarity=0.750 Sum_probs=21.0
Q ss_pred ccccHHHHHHcccccCCCCCeEEEeec---cccccCccchh
Q 046775 701 YHHSEKLAVAFGLIATPPGATIRVKKN---LRICVDCHTSF 738 (771)
Q Consensus 701 ~~hse~la~~~~~~~~~~~~~~~~~kn---~r~c~dch~~~ 738 (771)
..|||-+.-+| +|+..| +-+|+||-...
T Consensus 82 k~H~~~~~~G~----------~R~~RNFSI~G~C~~C~~S~ 112 (123)
T PF07255_consen 82 KNHSKHVQNGY----------LRKVRNFSILGVCGDCCESF 112 (123)
T ss_pred cchHHHhhcCe----------EEEecceeEEeehhhHHHHH
Confidence 35899887776 788888 67899995443
No 474
>PRK05629 hypothetical protein; Validated
Probab=26.19 E-value=6.3e+02 Score=26.05 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=18.8
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCH
Q 046775 476 AQHGRGKEALQMFGQMLEDGVLPNH 500 (771)
Q Consensus 476 ~~~g~~~~A~~l~~~m~~~g~~pd~ 500 (771)
.-.|+..+|+.+++++...|..|-.
T Consensus 204 v~~g~~~~Al~~l~~l~~~g~~pi~ 228 (318)
T PRK05629 204 ACAGQVSKAVASTRRALQLGVSPVA 228 (318)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 3457788888888888888877743
No 475
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=25.68 E-value=1.6e+02 Score=30.81 Aligned_cols=45 Identities=16% Similarity=0.161 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHhCCCccCCccceEEEcCEEEEEEeCCCCccchHHHHHH
Q 046775 619 DNVAKVRRFMKDNKLKKEPGMSWIEVKDKVYTFTVGDRSHARSKEIYAK 667 (771)
Q Consensus 619 ~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~~~~h~~~~~i~~~ 667 (771)
++...+-++|++.|++-. |++.++..|.|..-+.+.+.+.++...
T Consensus 283 D~~~~Y~~~Lkk~Gv~v~----~~~~e~~~H~~~~~~~~~~~a~~~~~~ 327 (336)
T KOG1515|consen 283 DEGLAYAEKLKKAGVEVT----LIHYEDGFHGFHILDPSSKEAHALMDA 327 (336)
T ss_pred hhhHHHHHHHHHcCCeEE----EEEECCCeeEEEecCCchhhHHHHHHH
Confidence 677888889999998643 999999999999888775555544433
No 476
>COG4890 Predicted outer membrane lipoprotein [Function unknown]
Probab=25.11 E-value=24 Score=22.14 Aligned_cols=10 Identities=60% Similarity=0.893 Sum_probs=8.1
Q ss_pred HHHHHccccc
Q 046775 706 KLAVAFGLIA 715 (771)
Q Consensus 706 ~la~~~~~~~ 715 (771)
-||.|||+|+
T Consensus 11 lLAcAFgiin 20 (37)
T COG4890 11 LLACAFGIIN 20 (37)
T ss_pred HHHHHHHHHH
Confidence 4788999886
No 477
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=25.09 E-value=93 Score=31.49 Aligned_cols=39 Identities=15% Similarity=0.107 Sum_probs=29.0
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHH
Q 046775 63 SWNSLFSCYVHCDFLEEAVCFFKEMVLSGIRPNEFSLSS 101 (771)
Q Consensus 63 ~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 101 (771)
-||..|..-.+.|+.++|+.++++..+.|+.--..+|..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 367888888888888888888888888886644444433
No 478
>COG4472 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.84 E-value=1.4e+02 Score=23.13 Aligned_cols=35 Identities=31% Similarity=0.636 Sum_probs=27.2
Q ss_pred EEEEEEeCCCCccchHHHHHHHHHHHHHHHhcCcccCC
Q 046775 647 KVYTFTVGDRSHARSKEIYAKLDEVSDLLNKAGYVPMV 684 (771)
Q Consensus 647 ~~~~f~~~~~~h~~~~~i~~~l~~l~~~~~~~g~~p~~ 684 (771)
..-.|-.+| +..++|.+.|......+++.||-|-.
T Consensus 6 ~T~~f~~~d---~~~~~v~e~L~~VY~sL~ekGYNpiN 40 (88)
T COG4472 6 ETMRFDVGD---SDKKDVKETLNDVYNSLEEKGYNPIN 40 (88)
T ss_pred ceeeeecCC---ChHHHHHHHHHHHHHHHHHcCCChHH
Confidence 344677777 45677788899999999999999854
No 479
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=24.79 E-value=2.3e+02 Score=26.17 Aligned_cols=33 Identities=12% Similarity=-0.002 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 046775 481 GKEALQMFGQMLEDGVLPNHITLVSVLCACNHA 513 (771)
Q Consensus 481 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 513 (771)
.-.|.++++++.+.+..++..|....|..+...
T Consensus 41 hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~ 73 (169)
T PRK11639 41 AISAYDLLDLLREAEPQAKPPTVYRALDFLLEQ 73 (169)
T ss_pred CCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHC
Confidence 334444444444444444444433333333333
No 480
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=24.76 E-value=2.2e+02 Score=24.74 Aligned_cols=68 Identities=7% Similarity=0.221 Sum_probs=43.3
Q ss_pred HHHHHHHHhCC-CCCCHh---HHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCchhHHHHHHHHHhcCCchhHHHHHH
Q 046775 553 QEAMELVDTMP-FQANAS---VWGALLGAARIYKNVEVGQHAAEMLFAI--EPEKSSTHVLLSNIYASAGMWDNVAKVRR 626 (771)
Q Consensus 553 ~eA~~~~~~m~-~~p~~~---~~~~ll~a~~~~~~~~~a~~~~~~~~~l--~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 626 (771)
+.+.+.|...+ .+.|+. +|-.++..| ++ ...+++.+... .-.-+..|...+..+...|+|.+|.++++
T Consensus 50 erc~~~f~~~~~YknD~RyLkiWi~ya~~~---~d---p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 50 ERCIRYFEDDERYKNDPRYLKIWLKYADNC---DE---PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHhc---CC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444444433 333433 666666554 33 45566666553 44566778899999999999999999886
No 481
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=24.33 E-value=58 Score=28.52 Aligned_cols=47 Identities=23% Similarity=0.277 Sum_probs=33.5
Q ss_pred HHHHHcccccCCCCC----eEEEeeccccccCccchhhhhhhhhcceEEEecC
Q 046775 706 KLAVAFGLIATPPGA----TIRVKKNLRICVDCHTSFEFISKIVSREIIVRDV 754 (771)
Q Consensus 706 ~la~~~~~~~~~~~~----~~~~~kn~r~c~dch~~~k~~s~~~~r~i~~rd~ 754 (771)
....|++|++|.++. .+-|.|+- -|+-||.+++.+- .-|=+|-+-+.
T Consensus 8 ~~l~a~~l~~~~~~~a~~~~~~vyksP-nCGCC~~w~~~mk-~~Gf~Vk~~~~ 58 (149)
T COG3019 8 RSLAALGLGSTGPAQAQATEMVVYKSP-NCGCCDEWAQHMK-ANGFEVKVVET 58 (149)
T ss_pred HHHHHHHhhcccchhcceeeEEEEeCC-CCccHHHHHHHHH-hCCcEEEEeec
Confidence 345677788888764 46777764 5999999999884 66666655443
No 482
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]
Probab=23.97 E-value=69 Score=34.38 Aligned_cols=85 Identities=20% Similarity=0.241 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhcCcccCCccccCCcchhhhhhhhccccHHHHHHccc----ccCCCCCeEEEeeccccccCccchhhhhh
Q 046775 667 KLDEVSDLLNKAGYVPMVETDLHDVEESEKEQLLYHHSEKLAVAFGL----IATPPGATIRVKKNLRICVDCHTSFEFIS 742 (771)
Q Consensus 667 ~l~~l~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~hse~la~~~~~----~~~~~~~~~~~~kn~r~c~dch~~~k~~s 742 (771)
..++....+.+.||.|-.-.+.-...+|.....|..+-.+ ..+||. ++-.+..|+.++=-+--|.+ +-++| ||
T Consensus 277 ~~~kvr~~ld~~G~~~~~Ii~Sdg~lde~~i~~l~~~g~~-~d~FGvGT~L~~~~~~~~~~~v~Klvev~g-~p~~K-is 353 (405)
T COG1488 277 LSEKVRAHLDKLGYDPVKIIVSDGLLDEKIIALLRAFGAR-NDAFGVGTNLTTAKPRPPLDIVYKLVEVNG-KPVAK-IS 353 (405)
T ss_pred HHHHHHHHHHHcCCCceEEEEeCCcchHHHHHHHHHhCCC-ccEeccchhhccCCCCCcceeEEEEEEECC-cccee-ec
Confidence 3455677888999999444444356667777777777677 889984 44445566777655555555 88888 78
Q ss_pred hhhcceEEEecC
Q 046775 743 KIVSREIIVRDV 754 (771)
Q Consensus 743 ~~~~r~i~~rd~ 754 (771)
+--|+.-+.|..
T Consensus 354 ~~Pgkk~~~r~~ 365 (405)
T COG1488 354 KNPGKKQVYRSA 365 (405)
T ss_pred CCCccceeecch
Confidence 888888888876
No 483
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=23.93 E-value=6.8e+02 Score=24.36 Aligned_cols=94 Identities=20% Similarity=0.260 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHH--HHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHH
Q 046775 466 VSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLP---NHITL--VSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYA 540 (771)
Q Consensus 466 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---d~~t~--~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~ 540 (771)
.-.|.||--|..+..+.+|.+.|.. ..|+.| |..++ ..-+......|++++|++..++.... -+.-+.+.+-
T Consensus 27 ~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F 103 (228)
T KOG2659|consen 27 EDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFF 103 (228)
T ss_pred hhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHH
Confidence 4567888777777777777777754 345666 22333 33455667889999999888877543 2333332222
Q ss_pred HHHH----HHhhcCCHHHHHHHHHhC
Q 046775 541 CMID----ILGRAGKFQEAMELVDTM 562 (771)
Q Consensus 541 ~lv~----~l~r~g~~~eA~~~~~~m 562 (771)
-|-. =+.|+|..++|+++.+.-
T Consensus 104 ~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 104 HLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 2221 246888999999988764
No 484
>PF00322 Endothelin: Endothelin family; InterPro: IPR001928 Endothelins (ET's) are the most potent vasoconstrictors known [, , ]. They stimulate cardiac contraction, regulate release of vasoactive substances, and stimulate mitogenesis in blood vessels in primary culture. They also stimulate contraction in almost all other smooth muscles (e.g., uterus, bronchus, vas deferensa and stomach) and stimulate secretion in several tissues (e.g., kidney, liver and adrenals). Endothelin receptors have also been found in the brain, e.g. cerebral cortex, cerebellum and glial cells. Endothelins have been implicated in a variety of pathophysiological conditions associated with stress, including hypertension, myocardial infarction, subarachnoid haemorrhage and renal failure. Endothelins are synthesised by proteolysis of large preproendothelins, which are cleaved to 'big endothelins' before being processed to the mature peptide. Sarafotoxins (SRTX) and bibrotoxin (BTX) are cardiotoxins from the venom of snakes of the Atractaspis family, structurally and functionally [, ] similar to endothelin. As shown in the following schematic representation, these peptides which are 21 residues long contain two intramolecular disulphide bonds. +-------------+ | | CxCxxxxxxxCxxxCxxxxxx | | +-------+ 'C': conserved cysteine involved in a disulphide bond. ; GO: 0019229 regulation of vasoconstriction, 0005576 extracellular region; PDB: 1V6R_A 1T7H_A 1EDP_A 1EDN_A 3CMH_A 6CMH_A 1SRB_A 2LDF_A.
Probab=23.57 E-value=35 Score=21.03 Aligned_cols=8 Identities=38% Similarity=1.182 Sum_probs=5.0
Q ss_pred CccCCCCC
Q 046775 763 GSCSCGGY 770 (771)
Q Consensus 763 g~csc~d~ 770 (771)
+.|||.++
T Consensus 4 pRCsC~s~ 11 (31)
T PF00322_consen 4 PRCSCASW 11 (31)
T ss_dssp --ECCSSS
T ss_pred cceecCCC
Confidence 58999875
No 485
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=23.28 E-value=3.3e+02 Score=25.47 Aligned_cols=14 Identities=36% Similarity=0.413 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHh
Q 046775 516 VAEAKHHFESMEKK 529 (771)
Q Consensus 516 ~~~a~~~~~~m~~~ 529 (771)
++.|+.+|+++.+.
T Consensus 85 LESAl~v~~~I~~E 98 (200)
T cd00280 85 LESALMVLESIEKE 98 (200)
T ss_pred HHHHHHHHHHHHHh
Confidence 34566666666655
No 486
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=23.09 E-value=5.1e+02 Score=22.58 Aligned_cols=58 Identities=17% Similarity=0.029 Sum_probs=33.7
Q ss_pred cchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHH-HHHHHHHHhcCCHHHHHHHHHH
Q 046775 536 QEHYACMIDILGRAGKFQEAMELVDTMPFQANASVW-GALLGAARIYKNVEVGQHAAEM 593 (771)
Q Consensus 536 ~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~-~~ll~a~~~~~~~~~a~~~~~~ 593 (771)
..+-.++..+|.=.|..++|.++++.....++-..+ .-+|..|+...+-++-..+-++
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 444556666677777777787777777655444322 3355566665555444444333
No 487
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=22.97 E-value=1.8e+02 Score=29.01 Aligned_cols=55 Identities=22% Similarity=0.189 Sum_probs=45.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHH
Q 046775 574 LLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFM 628 (771)
Q Consensus 574 ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 628 (771)
+=+++...++.+.|.++.++++.++|+|+.-.---+-+|+..|-..-|.+-....
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~ 241 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYF 241 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHH
Confidence 3346677889999999999999999999988888888999999888887766643
No 488
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=22.94 E-value=2.4e+02 Score=22.10 Aligned_cols=35 Identities=20% Similarity=0.199 Sum_probs=17.2
Q ss_pred HHhCCCCChhhHHHHHHHHHcCCChHHHHHHHhcCCC
Q 046775 22 VFTGFDSDEFVANSLVVMYAKCGNFIDSRRLFDAIPE 58 (771)
Q Consensus 22 ~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~ 58 (771)
++.+.+.+. .+..+...+..|+.+-+..+++.-..
T Consensus 17 l~~~~~~~~--~~~~l~~A~~~~~~~~~~~Ll~~g~~ 51 (89)
T PF12796_consen 17 LEKGADINL--GNTALHYAAENGNLEIVKLLLENGAD 51 (89)
T ss_dssp HHTTSTTTS--SSBHHHHHHHTTTHHHHHHHHHTTTC
T ss_pred HHCcCCCCC--CCCHHHHHHHcCCHHHHHHHHHhccc
Confidence 444444333 33344455555666666666554433
No 489
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=22.81 E-value=7.3e+02 Score=24.35 Aligned_cols=48 Identities=17% Similarity=0.241 Sum_probs=36.7
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 046775 453 ADRAFSEIPDRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHI 501 (771)
Q Consensus 453 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 501 (771)
+..+|+-..+|.+.....|+..+. .++.++|.+.+.++-+.|+.|..+
T Consensus 227 ~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 227 QENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI 274 (333)
T ss_pred hhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH
Confidence 345666666777777777777654 467999999999999999998765
No 490
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=22.74 E-value=4.6e+02 Score=21.93 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=14.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHh
Q 046775 369 SMITAYAQFGLGEEALKLYLEMQ 391 (771)
Q Consensus 369 ~li~~~~~~g~~~~A~~l~~~m~ 391 (771)
.++..|...++.++|..-+.++.
T Consensus 7 ~~l~ey~~~~D~~ea~~~l~~L~ 29 (113)
T smart00544 7 LIIEEYLSSGDTDEAVHCLLELK 29 (113)
T ss_pred HHHHHHHHcCCHHHHHHHHHHhC
Confidence 45556666667777776666664
No 491
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=22.58 E-value=3.3e+02 Score=23.66 Aligned_cols=56 Identities=16% Similarity=0.173 Sum_probs=41.4
Q ss_pred chhHHHHHHHHHhCCCccCCccceEEEcCEEEEEEeCCCC-cc---chHHHHHHHHHHHHHHHhcCcc
Q 046775 618 WDNVAKVRRFMKDNKLKKEPGMSWIEVKDKVYTFTVGDRS-HA---RSKEIYAKLDEVSDLLNKAGYV 681 (771)
Q Consensus 618 ~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~~~~-h~---~~~~i~~~l~~l~~~~~~~g~~ 681 (771)
..-+.+.++.+++.|+ |+.....=.|++.|.. -+ +...+...|+.+...++..||.
T Consensus 49 pnTv~raY~eLE~eG~--------i~t~rg~G~fV~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~G~s 108 (125)
T COG1725 49 PNTVQRAYQELEREGI--------VETKRGKGTFVTEDAKEILDQLKRELAEEELEEFIEEAKALGLS 108 (125)
T ss_pred HHHHHHHHHHHHHCCC--------EEEecCeeEEEcCCchhhHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3457788899999986 5666666789887732 33 4566777888899999999974
No 492
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=22.51 E-value=6.8e+02 Score=23.85 Aligned_cols=131 Identities=11% Similarity=0.078 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHH
Q 046775 465 IVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVL-CACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMI 543 (771)
Q Consensus 465 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv 543 (771)
+...+.++..+...|+++.|-+.|--++... ..|..+.-.+. .-+.+.+.-....++++.| .
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l----------------~ 103 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWL----------------I 103 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHH----------------H
Confidence 3467788888899999999999999988753 44544322221 1222333222222444444 4
Q ss_pred HHHhhcCCHHHHHHHHHhCC--------CCCCH---hHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CC---CCchhHHH
Q 046775 544 DILGRAGKFQEAMELVDTMP--------FQANA---SVWGALLGAARIYKNVEVGQHAAEMLFAI--EP---EKSSTHVL 607 (771)
Q Consensus 544 ~~l~r~g~~~eA~~~~~~m~--------~~p~~---~~~~~ll~a~~~~~~~~~a~~~~~~~~~l--~p---~~~~~~~~ 607 (771)
..|.......+...-....| ..|.- ..|..|.........++.+.++.+++-|+ .| +++..|..
T Consensus 104 ~~y~~~~~~~~~~~~~~~~pvfrsGs~t~tp~y~~~~LW~~l~~~~~~~~~~~~~~~l~~ri~Elvl~PPy~d~~el~~i 183 (199)
T PF04090_consen 104 SFYPSRKAFNQYYNRRIIAPVFRSGSRTHTPLYAITWLWILLIQEEDRESELDSYQQLIERIDELVLSPPYMDDGELWFI 183 (199)
T ss_pred HHHHHhhhccchhhhhcccccccCCCcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhcCCCCCCcHHHHHH
Confidence 44432222222222111112 11221 14555555443344466688888888775 44 56666665
Q ss_pred HHHHH
Q 046775 608 LSNIY 612 (771)
Q Consensus 608 l~~~y 612 (771)
.+-++
T Consensus 184 ~~m~~ 188 (199)
T PF04090_consen 184 RGMCH 188 (199)
T ss_pred HHHHH
Confidence 55443
No 493
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=22.01 E-value=6.2e+02 Score=28.82 Aligned_cols=24 Identities=8% Similarity=0.005 Sum_probs=14.8
Q ss_pred HHHHHHhccCChhHHHHHHHHHHH
Q 046775 303 TVLKSVASFQAIGVCKQVHALSVK 326 (771)
Q Consensus 303 ~ll~a~~~~~~~~~a~~i~~~~~~ 326 (771)
+++.||...|++..+++++.....
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~ 56 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFID 56 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc
Confidence 566666666666666666655543
No 494
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=21.91 E-value=37 Score=35.72 Aligned_cols=21 Identities=0% Similarity=0.151 Sum_probs=16.6
Q ss_pred ccCc----cchhhhhhhhhcce--EEEe
Q 046775 731 CVDC----HTSFEFISKIVSRE--IIVR 752 (771)
Q Consensus 731 c~dc----h~~~k~~s~~~~r~--i~~r 752 (771)
|+|| |.++|.|++ .|+- |.+|
T Consensus 268 c~d~g~qL~~Al~~I~~-eG~GvlvYLr 294 (369)
T PRK12485 268 AGPANWTLWAALQKVAE-EGHGVVVVLA 294 (369)
T ss_pred CCccHHHHHHHHHHHHH-hCCEEEEEec
Confidence 8999 999999998 5654 4556
No 495
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=21.87 E-value=1.1e+02 Score=26.44 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHhcCcccCCccccCCcchhhhhhhhccccHHHHHHcccccCC----CCCeE
Q 046775 662 KEIYAKLDEVSDLLNKAGYVPMVETDLHDVEESEKEQLLYHHSEKLAVAFGLIATP----PGATI 722 (771)
Q Consensus 662 ~~i~~~l~~l~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~----~~~~~ 722 (771)
+.+.+.+.+|...++..|+.+......-+ ++-+|..| +++| +|.||
T Consensus 23 ~~L~~av~~l~~~L~~~Giev~l~~~~l~-------------~~~~~~~~--~~S~~I~inG~pi 72 (120)
T PF10865_consen 23 ETLREAVKELAPVLAPLGIEVRLEEIELD-------------EEEFARQP--LESPTIRINGRPI 72 (120)
T ss_pred HHHHHHHHHHHHHHHhCCcEEEEEEEECC-------------hHHHhhcc--cCCCeeeECCEeh
Confidence 45556667777778889998865443222 34455556 5555 47777
No 496
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=21.76 E-value=7.5e+02 Score=24.07 Aligned_cols=95 Identities=17% Similarity=0.079 Sum_probs=53.5
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---C--CChhHHH--HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 046775 431 MSDTFAGNSLVNMYAKCGSIDDADRAFSEIP---D--RGIVSWS--AMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITL 503 (771)
Q Consensus 431 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~--~~~~~~~--~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 503 (771)
.+...-.|.||--|.-...+.+|-+.|..-. . .|..+.+ .-|......|+.++|++...+....=+.-|...+
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~ 102 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELF 102 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHH
Confidence 3444445565555555555556666665432 2 2333333 3466677888888888887776544333443222
Q ss_pred HHHH--H--HHhccCcHHHHHHHHHH
Q 046775 504 VSVL--C--ACNHAGLVAEAKHHFES 525 (771)
Q Consensus 504 ~~ll--~--a~~~~g~~~~a~~~~~~ 525 (771)
-.+. . -..+.|..++|+++.+.
T Consensus 103 F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 103 FHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 2222 1 24567778888887765
No 497
>PF14044 NETI: NETI protein
Probab=21.62 E-value=80 Score=22.78 Aligned_cols=19 Identities=21% Similarity=0.548 Sum_probs=14.0
Q ss_pred HHHHHHHHHhcCcccCCcc
Q 046775 668 LDEVSDLLNKAGYVPMVET 686 (771)
Q Consensus 668 l~~l~~~~~~~g~~p~~~~ 686 (771)
+.+-..+|++.||.|-...
T Consensus 10 I~~CL~RM~~eGY~PvrR~ 28 (57)
T PF14044_consen 10 ISDCLARMKKEGYMPVRRI 28 (57)
T ss_pred HHHHHHHHHHcCCCceeec
Confidence 3455678999999997543
No 498
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=21.54 E-value=35 Score=33.56 Aligned_cols=16 Identities=19% Similarity=0.602 Sum_probs=13.2
Q ss_pred ccccCccchhhhhhhh
Q 046775 729 RICVDCHTSFEFISKI 744 (771)
Q Consensus 729 r~c~dch~~~k~~s~~ 744 (771)
-+|+|||+.+|.+=.-
T Consensus 253 EtC~~C~sYlKilyqe 268 (308)
T COG3058 253 ETCGDCNSYLKILYQE 268 (308)
T ss_pred hcCCcHHHHHHHHHHh
Confidence 4899999999987543
No 499
>PRK07914 hypothetical protein; Reviewed
Probab=21.42 E-value=8.2e+02 Score=25.23 Aligned_cols=26 Identities=15% Similarity=0.029 Sum_probs=19.9
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHH
Q 046775 476 AQHGRGKEALQMFGQMLEDGVLPNHI 501 (771)
Q Consensus 476 ~~~g~~~~A~~l~~~m~~~g~~pd~~ 501 (771)
.-.|+..+|+.+++++...|..|-.+
T Consensus 206 i~~g~~~~A~~~l~~L~~~ge~p~~i 231 (320)
T PRK07914 206 AVAGDVAGAAEALRWAMMRGEPHVVL 231 (320)
T ss_pred HHCCCHHHHHHHHHHHHHCCCchHHH
Confidence 34588888999999988888777443
No 500
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=21.28 E-value=1.7e+02 Score=28.37 Aligned_cols=54 Identities=15% Similarity=0.131 Sum_probs=47.7
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 046775 579 RIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDNK 632 (771)
Q Consensus 579 ~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 632 (771)
...+|.+.+..++.+++++-|+....|..++....++|+.+.|.+-++.-.+..
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 346788899999999999999999999999999999999999998887766544
Done!