Query 046775
Match_columns 771
No_of_seqs 905 out of 4829
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 07:05:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046775.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046775hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.3E-42 4.4E-47 397.7 38.7 498 38-614 61-596 (597)
2 2xpi_A Anaphase-promoting comp 100.0 5.9E-42 2E-46 392.2 40.8 481 140-631 62-579 (597)
3 4g26_A Pentatricopeptide repea 99.9 5.4E-27 1.9E-31 257.7 20.2 184 365-549 27-223 (501)
4 1w3b_A UDP-N-acetylglucosamine 99.9 5.5E-24 1.9E-28 229.1 38.3 276 336-617 104-388 (388)
5 4g26_A Pentatricopeptide repea 99.9 1.7E-26 5.8E-31 253.8 18.8 184 62-245 27-223 (501)
6 1w3b_A UDP-N-acetylglucosamine 99.9 2.9E-23 1E-27 223.4 40.3 350 271-631 7-368 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 2.9E-23 1E-27 228.0 28.5 224 408-637 152-412 (450)
8 2gw1_A Mitochondrial precursor 99.9 1.9E-21 6.6E-26 217.3 31.0 437 165-608 9-489 (514)
9 2gw1_A Mitochondrial precursor 99.9 5E-21 1.7E-25 213.9 30.6 426 199-632 8-479 (514)
10 3fp2_A TPR repeat-containing p 99.9 1.9E-19 6.7E-24 202.3 32.1 418 164-631 27-491 (537)
11 3fp2_A TPR repeat-containing p 99.9 8E-19 2.7E-23 197.3 36.7 448 61-608 25-502 (537)
12 2y4t_A DNAJ homolog subfamily 99.9 4.8E-19 1.7E-23 194.3 32.6 294 332-631 25-358 (450)
13 3ieg_A DNAJ homolog subfamily 99.8 6.1E-17 2.1E-21 171.2 34.0 302 300-631 5-335 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 3.8E-17 1.3E-21 172.8 31.8 321 263-614 3-352 (359)
15 1xi4_A Clathrin heavy chain; a 99.8 6.2E-15 2.1E-19 170.9 51.4 547 26-623 721-1376(1630)
16 1b89_A Protein (clathrin heavy 99.8 4E-18 1.4E-22 178.3 19.0 320 244-599 15-343 (449)
17 3hym_B Cell division cycle pro 99.8 1.2E-16 4E-21 167.0 29.7 286 330-618 19-321 (330)
18 1xi4_A Clathrin heavy chain; a 99.8 7.1E-14 2.4E-18 162.2 54.1 490 9-562 853-1381(1630)
19 1b89_A Protein (clathrin heavy 99.8 5.5E-17 1.9E-21 169.7 23.5 223 41-292 14-236 (449)
20 3hym_B Cell division cycle pro 99.7 6.2E-16 2.1E-20 161.4 27.8 263 362-630 20-298 (330)
21 1fch_A Peroxisomal targeting s 99.7 3.4E-16 1.2E-20 166.4 25.2 277 343-626 35-354 (368)
22 2ooe_A Cleavage stimulation fa 99.7 9.7E-15 3.3E-19 163.7 36.8 87 161-252 12-100 (530)
23 2ooe_A Cleavage stimulation fa 99.7 3.6E-14 1.2E-18 159.0 39.8 410 196-631 12-492 (530)
24 2xm6_A Protein corresponding t 99.7 4.1E-14 1.4E-18 156.9 37.7 351 245-614 56-452 (490)
25 3mkr_A Coatomer subunit epsilo 99.7 2.5E-14 8.6E-19 146.4 31.3 246 343-630 9-263 (291)
26 4g1t_A Interferon-induced prot 99.7 6.1E-15 2.1E-19 162.7 28.5 366 232-642 51-470 (472)
27 1fch_A Peroxisomal targeting s 99.7 1.4E-15 4.8E-20 161.7 21.6 303 348-675 16-343 (368)
28 4eqf_A PEX5-related protein; a 99.7 1.1E-15 3.7E-20 162.5 20.3 230 400-632 66-311 (365)
29 4eqf_A PEX5-related protein; a 99.7 1.9E-15 6.3E-20 160.7 21.8 258 363-626 64-351 (365)
30 3cv0_A Peroxisome targeting si 99.7 6.3E-15 2.2E-19 153.5 22.9 259 363-627 20-311 (327)
31 3spa_A Mtrpol, DNA-directed RN 99.7 1.1E-16 3.9E-21 179.9 8.8 133 429-562 122-262 (1134)
32 2xm6_A Protein corresponding t 99.6 7.9E-13 2.7E-17 146.5 38.8 351 261-632 37-433 (490)
33 3spa_A Mtrpol, DNA-directed RN 99.6 1.6E-16 5.4E-21 178.7 7.0 147 30-176 127-286 (1134)
34 3cv0_A Peroxisome targeting si 99.6 1.1E-13 3.9E-18 143.9 27.3 258 262-562 20-312 (327)
35 3mkr_A Coatomer subunit epsilo 99.6 1E-13 3.6E-18 141.7 24.8 225 238-503 40-271 (291)
36 2pl2_A Hypothetical conserved 99.6 1.2E-13 4E-18 134.9 18.5 192 431-627 2-210 (217)
37 4g1t_A Interferon-induced prot 99.5 6.2E-12 2.1E-16 138.5 33.6 387 162-609 51-471 (472)
38 3uq3_A Heat shock protein STI1 99.5 4.8E-13 1.6E-17 133.9 21.5 210 408-631 14-236 (258)
39 1xnf_A Lipoprotein NLPI; TPR, 99.5 7.5E-13 2.6E-17 134.0 22.3 240 377-625 18-269 (275)
40 3uq3_A Heat shock protein STI1 99.5 1E-12 3.4E-17 131.5 21.4 233 366-611 7-256 (258)
41 3u4t_A TPR repeat-containing p 99.5 1.3E-12 4.3E-17 132.2 19.9 255 334-617 4-270 (272)
42 2h6f_A Protein farnesyltransfe 99.5 2.2E-12 7.6E-17 136.5 20.2 242 365-614 98-365 (382)
43 2vq2_A PILW, putative fimbrial 99.4 9.5E-12 3.3E-16 121.4 22.0 198 432-631 6-211 (225)
44 2ho1_A Type 4 fimbrial biogene 99.4 6.6E-12 2.3E-16 125.3 21.2 196 434-631 37-238 (252)
45 2ho1_A Type 4 fimbrial biogene 99.4 2.4E-11 8.1E-16 121.2 24.4 206 364-608 37-249 (252)
46 2vq2_A PILW, putative fimbrial 99.4 2.1E-11 7.2E-16 118.9 23.1 197 409-609 18-223 (225)
47 2q7f_A YRRB protein; TPR, prot 99.4 3.5E-12 1.2E-16 126.4 17.6 178 435-615 58-240 (243)
48 2pl2_A Hypothetical conserved 99.4 1.3E-11 4.6E-16 120.2 20.0 191 365-562 6-211 (217)
49 3e4b_A ALGK; tetratricopeptide 99.4 2.2E-11 7.5E-16 132.9 23.8 369 105-527 12-419 (452)
50 3u4t_A TPR repeat-containing p 99.4 3.7E-11 1.3E-15 121.3 23.3 227 299-529 4-250 (272)
51 2q7f_A YRRB protein; TPR, prot 99.4 6.5E-12 2.2E-16 124.4 17.2 197 432-631 21-222 (243)
52 3e4b_A ALGK; tetratricopeptide 99.4 4.6E-11 1.6E-15 130.4 25.5 338 208-599 14-389 (452)
53 1ouv_A Conserved hypothetical 99.4 1.1E-10 3.9E-15 118.0 26.4 224 363-632 5-252 (273)
54 2h6f_A Protein farnesyltransfe 99.4 8.4E-12 2.9E-16 132.1 17.3 222 400-628 98-344 (382)
55 1ouv_A Conserved hypothetical 99.4 8.9E-11 3E-15 118.8 24.2 229 331-603 4-257 (273)
56 4abn_A Tetratricopeptide repea 99.4 4.3E-12 1.5E-16 139.5 15.3 206 415-626 84-316 (474)
57 3sf4_A G-protein-signaling mod 99.3 1.8E-11 6.1E-16 131.5 17.8 197 434-630 87-335 (406)
58 1xnf_A Lipoprotein NLPI; TPR, 99.3 2.2E-11 7.6E-16 123.1 17.3 217 410-632 16-245 (275)
59 3vtx_A MAMA; tetratricopeptide 99.3 6.1E-11 2.1E-15 112.0 19.1 162 465-631 5-170 (184)
60 4a1s_A PINS, partner of inscut 99.3 9.8E-12 3.4E-16 134.1 15.2 197 434-630 126-371 (411)
61 3ro2_A PINS homolog, G-protein 99.3 4.1E-11 1.4E-15 124.6 19.5 258 372-631 13-332 (338)
62 4e6h_A MRNA 3'-END-processing 99.3 6.5E-09 2.2E-13 117.4 38.3 417 160-604 64-577 (679)
63 3sf4_A G-protein-signaling mod 99.3 1.1E-11 3.9E-16 133.0 13.8 155 466-620 188-365 (406)
64 4gyw_A UDP-N-acetylglucosamine 99.3 4.7E-11 1.6E-15 136.5 17.5 161 465-630 9-173 (723)
65 2ond_A Cleavage stimulation fa 99.3 7.7E-10 2.6E-14 114.1 25.0 219 381-603 33-276 (308)
66 3vtx_A MAMA; tetratricopeptide 99.2 1.5E-10 5.1E-15 109.3 16.5 166 432-602 3-175 (184)
67 4a1s_A PINS, partner of inscut 99.2 1.2E-10 4E-15 125.6 17.4 274 266-599 51-374 (411)
68 3ro2_A PINS homolog, G-protein 99.2 1.5E-10 5.2E-15 120.2 17.7 275 266-600 8-335 (338)
69 4e6h_A MRNA 3'-END-processing 99.2 3E-08 1E-12 111.9 35.9 144 401-547 436-585 (679)
70 4i17_A Hypothetical protein; T 99.2 7.4E-10 2.5E-14 108.6 19.0 205 398-614 6-226 (228)
71 3nf1_A KLC 1, kinesin light ch 99.2 4.3E-11 1.5E-15 123.3 10.4 162 367-528 30-223 (311)
72 2ond_A Cleavage stimulation fa 99.2 1.1E-09 3.8E-14 112.9 20.8 211 416-632 33-271 (308)
73 3nf1_A KLC 1, kinesin light ch 99.2 2.3E-10 7.8E-15 117.8 15.5 232 399-630 27-306 (311)
74 3as5_A MAMA; tetratricopeptide 99.2 7.7E-10 2.6E-14 103.9 17.1 162 435-631 9-173 (186)
75 3ulq_A Response regulator aspa 99.1 1.2E-09 4.2E-14 116.5 19.7 226 371-596 110-367 (383)
76 3as5_A MAMA; tetratricopeptide 99.1 2.5E-09 8.6E-14 100.3 18.9 169 400-604 9-180 (186)
77 4abn_A Tetratricopeptide repea 99.1 6.6E-10 2.3E-14 121.9 16.7 177 450-631 84-287 (474)
78 4i17_A Hypothetical protein; T 99.1 1.4E-09 4.8E-14 106.5 16.8 187 433-631 6-209 (228)
79 3ulq_A Response regulator aspa 99.1 9.3E-10 3.2E-14 117.4 16.7 225 405-630 109-367 (383)
80 1hz4_A MALT regulatory protein 99.1 2.7E-08 9.3E-13 105.4 27.5 257 374-630 24-321 (373)
81 4gyw_A UDP-N-acetylglucosamine 99.0 1.7E-09 5.9E-14 123.6 13.7 165 431-600 6-177 (723)
82 3q15_A PSP28, response regulat 99.0 8E-09 2.8E-13 109.9 17.9 220 409-629 111-363 (378)
83 3q15_A PSP28, response regulat 99.0 1.2E-07 4.3E-12 100.6 25.8 228 371-598 108-366 (378)
84 3edt_B KLC 2, kinesin light ch 99.0 4.8E-09 1.7E-13 105.9 13.7 221 410-630 12-280 (283)
85 1qqe_A Vesicular transport pro 98.9 1E-08 3.5E-13 104.7 15.8 184 443-626 46-264 (292)
86 1hz4_A MALT regulatory protein 98.9 4.4E-07 1.5E-11 96.0 28.3 255 273-527 24-320 (373)
87 1qqe_A Vesicular transport pro 98.9 1.8E-08 6.1E-13 102.9 16.6 214 348-605 32-277 (292)
88 3qky_A Outer membrane assembly 98.9 4.1E-08 1.4E-12 98.2 18.7 203 432-677 13-247 (261)
89 4ga2_A E3 SUMO-protein ligase 98.9 1.7E-09 5.9E-14 98.1 7.0 136 477-617 9-149 (150)
90 3qky_A Outer membrane assembly 98.9 6.9E-08 2.4E-12 96.6 18.8 201 398-620 14-250 (261)
91 3edt_B KLC 2, kinesin light ch 98.9 6.9E-08 2.3E-12 97.3 18.0 199 400-598 44-282 (283)
92 2yhc_A BAMD, UPF0169 lipoprote 98.8 1.2E-07 4E-12 92.6 18.4 181 434-634 4-216 (225)
93 3mv2_B Coatomer subunit epsilo 98.8 1.3E-06 4.3E-11 87.7 25.4 163 465-632 100-283 (310)
94 2pzi_A Probable serine/threoni 98.8 1.4E-08 4.7E-13 116.7 11.2 151 410-567 402-566 (681)
95 3qou_A Protein YBBN; thioredox 98.8 6.8E-08 2.3E-12 98.2 15.0 161 462-627 114-280 (287)
96 2fo7_A Synthetic consensus TPR 98.8 1.8E-07 6.2E-12 82.0 16.0 129 467-630 3-131 (136)
97 2pzi_A Probable serine/threoni 98.8 1.4E-07 4.8E-12 108.3 18.7 164 445-614 402-580 (681)
98 2fo7_A Synthetic consensus TPR 98.8 1.4E-07 4.6E-12 82.8 14.6 95 538-632 3-99 (136)
99 4ga2_A E3 SUMO-protein ligase 98.7 3.2E-08 1.1E-12 89.6 10.0 120 507-629 4-127 (150)
100 3mv2_B Coatomer subunit epsilo 98.7 8.2E-07 2.8E-11 89.1 19.7 241 344-606 24-291 (310)
101 3urz_A Uncharacterized protein 98.7 2.5E-07 8.6E-12 88.9 14.4 125 471-601 60-190 (208)
102 2uy1_A Cleavage stimulation fa 98.7 7.1E-06 2.4E-10 89.8 27.4 363 178-596 11-412 (493)
103 2r5s_A Uncharacterized protein 98.6 4.9E-07 1.7E-11 84.2 15.3 155 437-628 9-170 (176)
104 3gyz_A Chaperone protein IPGC; 98.6 1E-07 3.5E-12 86.1 9.3 102 531-632 30-134 (151)
105 3rjv_A Putative SEL1 repeat pr 98.6 1.6E-06 5.5E-11 83.5 18.4 160 464-632 17-198 (212)
106 2ifu_A Gamma-SNAP; membrane fu 98.6 9.3E-07 3.2E-11 90.7 17.4 219 377-623 4-253 (307)
107 2vsy_A XCC0866; transferase, g 98.6 5.9E-07 2E-11 101.1 17.0 158 447-609 2-169 (568)
108 2vsy_A XCC0866; transferase, g 98.6 3.7E-07 1.3E-11 102.7 15.3 149 478-631 2-157 (568)
109 3dra_A Protein farnesyltransfe 98.6 4E-06 1.4E-10 84.9 21.3 148 479-630 124-286 (306)
110 4gco_A Protein STI-1; structur 98.6 2.8E-07 9.4E-12 80.5 11.2 108 502-612 15-125 (126)
111 2uy1_A Cleavage stimulation fa 98.6 2.8E-05 9.5E-10 85.1 29.6 366 74-493 7-412 (493)
112 2vgx_A Chaperone SYCD; alterna 98.6 1.7E-07 5.7E-12 84.6 9.7 101 531-631 15-118 (148)
113 4gco_A Protein STI-1; structur 98.6 3.9E-07 1.3E-11 79.6 11.3 100 532-631 8-110 (126)
114 2c2l_A CHIP, carboxy terminus 98.5 2.6E-07 8.9E-12 93.5 10.7 191 433-631 3-199 (281)
115 3urz_A Uncharacterized protein 98.5 1.1E-06 3.7E-11 84.5 13.7 181 369-576 9-198 (208)
116 3dra_A Protein farnesyltransfe 98.5 3E-05 1E-09 78.4 24.6 227 378-611 47-302 (306)
117 2yhc_A BAMD, UPF0169 lipoprote 98.5 2.8E-06 9.5E-11 82.7 16.4 184 399-603 4-219 (225)
118 3qou_A Protein YBBN; thioredox 98.5 3.6E-06 1.2E-10 85.4 17.7 154 401-560 119-279 (287)
119 2ifu_A Gamma-SNAP; membrane fu 98.5 2.8E-07 9.7E-12 94.6 9.4 230 311-589 4-253 (307)
120 2xcb_A PCRH, regulatory protei 98.5 1.1E-06 3.7E-11 78.5 12.1 96 536-631 18-115 (142)
121 1hh8_A P67PHOX, NCF-2, neutrop 98.5 2E-06 6.7E-11 82.7 14.6 122 506-632 12-151 (213)
122 1hh8_A P67PHOX, NCF-2, neutrop 98.4 5.3E-06 1.8E-10 79.6 16.9 146 437-602 9-155 (213)
123 2qfc_A PLCR protein; TPR, HTH, 98.4 4.2E-06 1.4E-10 85.2 16.7 162 467-628 77-263 (293)
124 2r5s_A Uncharacterized protein 98.4 3.4E-06 1.1E-10 78.4 14.6 153 336-492 9-171 (176)
125 1na0_A Designed protein CTPR3; 98.4 3.6E-06 1.2E-10 72.4 13.6 112 503-616 12-125 (125)
126 3u3w_A Transcriptional activat 98.4 2.2E-05 7.4E-10 79.8 21.2 159 471-629 81-264 (293)
127 4f3v_A ESX-1 secretion system 98.4 6.6E-07 2.2E-11 88.5 9.0 136 470-610 107-249 (282)
128 2vyi_A SGTA protein; chaperone 98.4 4E-06 1.4E-10 72.8 13.2 116 502-619 14-131 (131)
129 2lni_A Stress-induced-phosphop 98.4 3.4E-06 1.2E-10 73.6 12.0 117 465-617 16-133 (133)
130 1p5q_A FKBP52, FK506-binding p 98.4 1.9E-06 6.5E-11 89.6 11.9 142 465-628 147-291 (336)
131 3rjv_A Putative SEL1 repeat pr 98.3 1.3E-05 4.4E-10 77.0 16.9 172 418-599 5-199 (212)
132 1a17_A Serine/threonine protei 98.3 6.5E-06 2.2E-10 75.1 13.9 120 508-630 21-145 (166)
133 3upv_A Heat shock protein STI1 98.3 5.2E-06 1.8E-10 72.1 11.7 94 538-631 6-101 (126)
134 3gyz_A Chaperone protein IPGC; 98.3 2.2E-06 7.7E-11 77.2 9.3 97 503-602 39-138 (151)
135 2e2e_A Formate-dependent nitri 98.3 5.3E-06 1.8E-10 77.0 12.2 118 513-632 23-145 (177)
136 2fbn_A 70 kDa peptidylprolyl i 98.3 1.5E-06 5.2E-11 82.6 8.3 171 439-630 9-185 (198)
137 1hxi_A PEX5, peroxisome target 98.3 1.8E-06 6.2E-11 74.6 8.0 95 537-631 18-114 (121)
138 2vgx_A Chaperone SYCD; alterna 98.2 3.1E-06 1.1E-10 76.1 9.2 103 502-607 23-128 (148)
139 4f3v_A ESX-1 secretion system 98.2 1.7E-06 5.9E-11 85.5 7.6 181 446-631 18-237 (282)
140 2kck_A TPR repeat; tetratricop 98.2 9.2E-06 3.1E-10 68.3 11.2 97 536-632 6-107 (112)
141 1wao_1 Serine/threonine protei 98.2 4.3E-06 1.5E-10 91.3 11.4 115 510-627 16-135 (477)
142 3gw4_A Uncharacterized protein 98.2 2.6E-05 8.9E-10 73.8 15.6 93 435-527 27-134 (203)
143 3gw4_A Uncharacterized protein 98.2 1.7E-05 5.9E-10 75.1 14.3 155 446-629 4-174 (203)
144 3u3w_A Transcriptional activat 98.2 0.00013 4.4E-09 74.0 21.3 158 440-597 81-266 (293)
145 3dss_A Geranylgeranyl transfer 98.2 0.00034 1.2E-08 71.2 24.0 191 415-611 90-318 (331)
146 3q7a_A Farnesyltransferase alp 98.2 9.7E-05 3.3E-09 75.6 19.7 208 418-630 73-330 (349)
147 2qfc_A PLCR protein; TPR, HTH, 98.2 3E-05 1E-09 78.7 15.9 165 367-561 78-262 (293)
148 2e2e_A Formate-dependent nitri 98.2 1.5E-05 5.3E-10 73.8 12.5 130 476-608 21-155 (177)
149 2xcb_A PCRH, regulatory protei 98.1 3.9E-06 1.3E-10 74.8 7.7 106 503-611 21-129 (142)
150 3q49_B STIP1 homology and U bo 98.1 1.4E-05 4.8E-10 70.3 11.2 97 535-631 8-106 (137)
151 2dba_A Smooth muscle cell asso 98.1 3.3E-05 1.1E-09 68.7 13.5 114 464-614 27-145 (148)
152 1a17_A Serine/threonine protei 98.1 2.6E-05 8.9E-10 71.0 12.9 91 468-561 16-106 (166)
153 1elw_A TPR1-domain of HOP; HOP 98.1 4E-05 1.4E-09 64.9 13.1 74 539-612 41-116 (118)
154 3rkv_A Putative peptidylprolyl 98.1 1.6E-05 5.3E-10 72.6 11.0 63 569-631 64-126 (162)
155 3sz7_A HSC70 cochaperone (SGT) 98.1 1.7E-05 5.7E-10 72.6 10.7 90 540-629 15-106 (164)
156 1wao_1 Serine/threonine protei 98.1 5.7E-06 1.9E-10 90.4 8.8 115 441-560 13-134 (477)
157 1elw_A TPR1-domain of HOP; HOP 98.1 1.9E-05 6.4E-10 67.0 10.4 96 536-631 4-101 (118)
158 1na0_A Designed protein CTPR3; 98.1 2.1E-05 7.3E-10 67.4 10.8 96 536-631 9-106 (125)
159 2c2l_A CHIP, carboxy terminus 98.1 1.2E-05 4.2E-10 81.1 10.1 91 335-427 6-100 (281)
160 3q7a_A Farnesyltransferase alp 98.0 0.0013 4.4E-08 67.3 24.7 229 374-609 64-344 (349)
161 3sz7_A HSC70 cochaperone (SGT) 98.0 2.5E-05 8.5E-10 71.4 11.1 105 503-610 14-121 (164)
162 3upv_A Heat shock protein STI1 98.0 2.5E-05 8.6E-10 67.7 10.3 77 537-613 39-123 (126)
163 2dba_A Smooth muscle cell asso 98.0 3.6E-05 1.2E-09 68.4 11.6 96 536-631 28-128 (148)
164 2lni_A Stress-induced-phosphop 98.0 2.1E-05 7.1E-10 68.5 9.8 96 536-631 16-113 (133)
165 2xev_A YBGF; tetratricopeptide 98.0 2.5E-05 8.6E-10 67.8 10.3 91 541-631 7-105 (129)
166 2vyi_A SGTA protein; chaperone 98.0 6.7E-05 2.3E-09 64.8 12.4 96 536-631 12-109 (131)
167 1dce_A Protein (RAB geranylger 98.0 0.00016 5.5E-09 80.4 18.1 168 448-620 43-244 (567)
168 4gcn_A Protein STI-1; structur 98.0 1.6E-05 5.5E-10 69.2 8.0 92 539-630 11-111 (127)
169 3dss_A Geranylgeranyl transfer 97.9 0.00073 2.5E-08 68.7 20.8 177 450-630 90-303 (331)
170 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 4.2E-05 1.4E-09 83.1 12.2 143 465-629 268-413 (457)
171 2hr2_A Hypothetical protein; a 97.9 6.4E-05 2.2E-09 67.1 10.8 110 467-606 13-140 (159)
172 3k9i_A BH0479 protein; putativ 97.9 8.5E-06 2.9E-10 69.8 4.8 83 548-630 2-89 (117)
173 4gcn_A Protein STI-1; structur 97.9 6.2E-05 2.1E-09 65.4 10.1 92 468-561 11-108 (127)
174 2hr2_A Hypothetical protein; a 97.9 4.1E-05 1.4E-09 68.3 8.5 62 569-630 58-130 (159)
175 1elr_A TPR2A-domain of HOP; HO 97.9 8.8E-05 3E-09 64.1 10.8 94 538-631 6-108 (131)
176 1p5q_A FKBP52, FK506-binding p 97.8 7.5E-05 2.6E-09 77.4 11.7 138 412-555 126-283 (336)
177 3q49_B STIP1 homology and U bo 97.8 0.0001 3.4E-09 64.7 11.0 96 502-600 11-109 (137)
178 1ihg_A Cyclophilin 40; ppiase 97.8 7.7E-05 2.6E-09 78.3 11.3 137 466-624 224-363 (370)
179 2fbn_A 70 kDa peptidylprolyl i 97.8 0.0002 7E-09 67.6 13.3 63 569-631 89-151 (198)
180 2xev_A YBGF; tetratricopeptide 97.8 0.00028 9.7E-09 60.9 12.7 100 509-611 11-119 (129)
181 3ro3_A PINS homolog, G-protein 97.8 0.00013 4.4E-09 65.6 10.9 136 466-630 10-157 (164)
182 1elr_A TPR2A-domain of HOP; HO 97.8 8.7E-05 3E-09 64.1 9.2 116 466-614 5-124 (131)
183 1hxi_A PEX5, peroxisome target 97.8 7.4E-05 2.5E-09 64.3 8.6 91 509-602 26-119 (121)
184 4b4t_Q 26S proteasome regulato 97.8 0.00018 6.1E-09 77.4 13.7 162 467-628 57-242 (434)
185 2kck_A TPR repeat; tetratricop 97.8 0.00016 5.6E-09 60.3 10.6 92 467-562 8-103 (112)
186 3n71_A Histone lysine methyltr 97.8 6.5E-05 2.2E-09 81.5 9.9 100 538-637 353-470 (490)
187 2if4_A ATFKBP42; FKBP-like, al 97.8 5.8E-05 2E-09 78.3 9.2 147 466-632 180-329 (338)
188 3rkv_A Putative peptidylprolyl 97.7 0.00017 5.8E-09 65.6 10.9 122 466-613 12-143 (162)
189 4b4t_Q 26S proteasome regulato 97.7 0.0054 1.9E-07 65.6 24.6 251 342-593 13-320 (434)
190 3ro3_A PINS homolog, G-protein 97.7 0.00019 6.5E-09 64.5 10.4 95 434-528 9-117 (164)
191 3k9i_A BH0479 protein; putativ 97.7 4.2E-05 1.4E-09 65.3 5.2 74 538-611 29-104 (117)
192 2if4_A ATFKBP42; FKBP-like, al 97.6 6.6E-05 2.3E-09 77.9 7.1 113 502-631 181-293 (338)
193 2l6j_A TPR repeat-containing p 97.6 0.00011 3.7E-09 61.6 7.2 89 536-624 4-100 (111)
194 3ma5_A Tetratricopeptide repea 97.6 0.00024 8.2E-09 58.5 8.6 65 567-631 6-70 (100)
195 1ihg_A Cyclophilin 40; ppiase 97.6 0.00026 9E-09 74.2 10.9 112 501-631 224-336 (370)
196 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.00054 1.8E-08 74.2 13.4 131 480-632 249-381 (457)
197 1na3_A Designed protein CTPR2; 97.5 0.00034 1.2E-08 55.9 8.9 81 536-616 9-91 (91)
198 3bee_A Putative YFRE protein; 97.5 0.00035 1.2E-08 56.5 8.7 68 566-633 4-74 (93)
199 2kat_A Uncharacterized protein 97.5 0.00022 7.6E-09 60.4 7.1 77 555-631 4-82 (115)
200 3n71_A Histone lysine methyltr 97.4 0.00023 7.8E-09 77.2 8.1 114 546-677 319-450 (490)
201 3qwp_A SET and MYND domain-con 97.4 0.00029 9.8E-09 75.2 7.8 113 546-676 297-427 (429)
202 1zu2_A Mitochondrial import re 97.3 0.0001 3.5E-09 65.6 3.2 49 584-632 62-121 (158)
203 1zu2_A Mitochondrial import re 97.2 0.00031 1.1E-08 62.5 5.4 104 476-605 13-128 (158)
204 2l6j_A TPR repeat-containing p 97.2 0.0003 1E-08 58.8 5.2 94 465-563 4-105 (111)
205 3qww_A SET and MYND domain-con 97.2 0.0003 1E-08 74.9 5.3 83 570-670 342-432 (433)
206 3ly7_A Transcriptional activat 97.1 0.0085 2.9E-07 61.1 14.8 141 462-630 191-338 (372)
207 1klx_A Cysteine rich protein B 97.0 0.0056 1.9E-07 53.7 11.1 111 479-632 9-127 (138)
208 1dce_A Protein (RAB geranylger 96.9 0.0083 2.8E-07 66.5 14.4 147 478-629 42-219 (567)
209 1na3_A Designed protein CTPR2; 96.8 0.0031 1E-07 50.1 7.5 64 568-631 9-72 (91)
210 3ly7_A Transcriptional activat 96.8 0.0081 2.8E-07 61.3 11.9 71 593-671 268-339 (372)
211 1klx_A Cysteine rich protein B 96.6 0.01 3.4E-07 52.0 10.0 109 379-495 10-127 (138)
212 3ma5_A Tetratricopeptide repea 96.6 0.0042 1.4E-07 50.9 6.8 61 465-527 7-68 (100)
213 3qww_A SET and MYND domain-con 96.6 0.011 3.6E-07 63.0 11.3 67 539-605 343-424 (433)
214 2kat_A Uncharacterized protein 96.4 0.0095 3.2E-07 50.0 8.3 61 465-527 19-80 (115)
215 3lvg_A Clathrin heavy chain 1; 96.4 0.0029 9.9E-08 65.7 5.5 237 29-284 53-325 (624)
216 3qwp_A SET and MYND domain-con 96.4 0.02 6.8E-07 60.9 12.1 110 472-608 294-416 (429)
217 2kc7_A BFR218_protein; tetratr 96.4 0.015 5.1E-07 47.1 8.8 64 542-605 6-72 (99)
218 2kc7_A BFR218_protein; tetratr 96.2 0.01 3.6E-07 48.0 6.9 59 574-632 6-65 (99)
219 3mkq_A Coatomer beta'-subunit; 96.1 0.1 3.4E-06 60.9 17.7 48 443-492 661-708 (814)
220 3mkq_A Coatomer beta'-subunit; 96.0 0.16 5.3E-06 59.2 18.7 103 341-460 660-762 (814)
221 1pc2_A Mitochondria fission pr 95.6 0.14 4.9E-06 44.8 11.8 94 482-608 15-111 (152)
222 3u64_A Protein TP_0956; tetrat 95.5 0.043 1.5E-06 53.6 8.9 86 553-638 180-276 (301)
223 1pc2_A Mitochondria fission pr 95.3 0.094 3.2E-06 46.0 9.4 90 566-681 30-124 (152)
224 2v5f_A Prolyl 4-hydroxylase su 95.2 0.085 2.9E-06 43.2 8.9 71 539-609 8-87 (104)
225 3mkq_B Coatomer subunit alpha; 94.8 0.65 2.2E-05 41.7 13.7 129 442-594 13-141 (177)
226 3lvg_A Clathrin heavy chain 1; 94.5 0.0038 1.3E-07 64.9 -1.8 210 60-286 53-285 (624)
227 3mkq_B Coatomer subunit alpha; 94.2 2.1 7.1E-05 38.4 15.7 104 341-461 13-116 (177)
228 3u64_A Protein TP_0956; tetrat 94.1 0.4 1.4E-05 46.9 11.6 112 446-562 133-266 (301)
229 3bee_A Putative YFRE protein; 94.1 0.16 5.4E-06 40.6 7.5 67 534-600 4-75 (93)
230 4gns_B Protein CSD3, chitin bi 94.0 0.13 4.4E-06 58.0 9.0 53 576-628 345-397 (754)
231 1wy6_A Hypothetical protein ST 93.9 2.6 8.8E-05 35.6 15.6 140 476-634 18-157 (172)
232 1nzn_A CGI-135 protein, fissio 91.4 2.1 7.2E-05 35.9 10.8 39 571-609 77-115 (126)
233 4ady_A RPN2, 26S proteasome re 90.8 28 0.00095 40.1 29.4 150 340-493 497-657 (963)
234 1qsa_A Protein (soluble lytic 89.5 28 0.00096 38.3 26.2 260 334-608 73-355 (618)
235 1y8m_A FIS1; mitochondria, unk 88.7 8 0.00027 33.1 12.2 72 533-604 36-113 (144)
236 2v5f_A Prolyl 4-hydroxylase su 87.8 1.9 6.4E-05 34.9 7.9 64 568-631 5-75 (104)
237 3lpz_A GET4 (YOR164C homolog); 87.1 26 0.00089 35.0 19.7 134 32-176 37-181 (336)
238 1nzn_A CGI-135 protein, fissio 87.0 2.2 7.7E-05 35.8 7.8 66 566-631 33-103 (126)
239 2qx5_A Nucleoporin NIC96; mRNA 86.5 11 0.00037 41.8 15.2 83 370-463 300-385 (661)
240 1wy6_A Hypothetical protein ST 86.5 14 0.00048 31.3 13.0 62 368-430 95-156 (172)
241 4h7y_A Dual specificity protei 86.3 4 0.00014 35.3 9.0 109 460-603 8-129 (161)
242 1v54_E Cytochrome C oxidase po 85.7 5.6 0.00019 31.6 8.7 69 554-634 31-99 (109)
243 4b4t_P 26S proteasome regulato 83.5 47 0.0016 34.9 22.1 95 468-562 140-244 (445)
244 3o48_A Mitochondria fission 1 83.3 20 0.00067 30.3 12.0 81 495-608 35-118 (134)
245 2p58_C Putative type III secre 83.0 13 0.00045 29.3 9.6 86 414-504 22-107 (116)
246 2ff4_A Probable regulatory pro 82.9 11 0.00038 39.0 12.8 65 571-635 174-243 (388)
247 2uwj_G Type III export protein 82.5 12 0.00043 29.4 9.3 87 414-505 21-107 (115)
248 4h7y_A Dual specificity protei 81.7 7.8 0.00027 33.5 8.8 39 57-96 9-53 (161)
249 4gns_B Protein CSD3, chitin bi 80.2 25 0.00085 39.6 14.9 51 474-526 346-397 (754)
250 4ady_A RPN2, 26S proteasome re 80.0 93 0.0032 35.9 26.3 278 343-630 384-695 (963)
251 2p58_C Putative type III secre 79.9 18 0.00062 28.6 9.4 86 313-403 22-107 (116)
252 3ffl_A Anaphase-promoting comp 79.8 8.3 0.00028 34.0 8.6 26 540-565 126-151 (167)
253 2y69_E Cytochrome C oxidase su 79.7 15 0.00051 30.9 9.5 70 553-634 73-142 (152)
254 2ff4_A Probable regulatory pro 79.2 9.8 0.00033 39.4 10.8 69 469-538 175-247 (388)
255 3o48_A Mitochondria fission 1 78.5 9.1 0.00031 32.3 8.1 66 566-631 38-107 (134)
256 1zbp_A Hypothetical protein VP 78.5 23 0.00078 34.0 11.9 123 474-603 6-135 (273)
257 2wpv_A GET4, UPF0363 protein Y 76.9 61 0.0021 32.0 19.3 129 237-376 38-177 (312)
258 4fhn_B Nucleoporin NUP120; pro 76.5 66 0.0022 38.6 18.3 143 404-554 817-989 (1139)
259 2uwj_G Type III export protein 76.3 17 0.00058 28.7 8.3 85 314-403 22-106 (115)
260 3lpz_A GET4 (YOR164C homolog); 76.0 66 0.0023 32.0 21.8 168 335-528 37-215 (336)
261 1v54_E Cytochrome C oxidase po 76.0 17 0.00057 28.9 8.3 64 480-545 25-88 (109)
262 2l0z_A Glycoprotein G2; zinc-b 73.6 1.1 3.7E-05 28.3 0.9 13 758-770 16-29 (42)
263 1wdy_A 2-5A-dependent ribonucl 73.3 39 0.0013 32.3 13.1 23 35-57 7-29 (285)
264 2wpv_A GET4, UPF0363 protein Y 73.0 76 0.0026 31.3 21.2 169 335-529 35-217 (312)
265 1y8m_A FIS1; mitochondria, unk 72.0 46 0.0016 28.4 13.5 72 495-569 34-111 (144)
266 3ffl_A Anaphase-promoting comp 69.9 29 0.001 30.5 9.5 25 603-627 123-147 (167)
267 1qc6_A EVH1 domain from ENA/VA 65.8 1.8 6.3E-05 36.7 1.0 40 719-766 44-87 (130)
268 3esl_A Checkpoint serine/threo 63.8 87 0.003 28.5 13.1 107 553-685 61-173 (202)
269 2y69_E Cytochrome C oxidase su 63.5 38 0.0013 28.5 8.3 61 483-545 71-131 (152)
270 1wdy_A 2-5A-dependent ribonucl 62.8 1E+02 0.0036 29.1 14.8 46 413-458 193-240 (285)
271 2qx5_A Nucleoporin NIC96; mRNA 60.6 2E+02 0.007 31.7 21.8 41 135-175 156-199 (661)
272 4fhn_B Nucleoporin NUP120; pro 58.2 1.3E+02 0.0046 35.9 15.8 51 471-526 818-868 (1139)
273 1n11_A Ankyrin; clathrin, BAND 57.9 1.1E+02 0.0037 31.7 13.6 331 36-399 17-372 (437)
274 1zbp_A Hypothetical protein VP 57.7 11 0.00037 36.2 4.8 60 544-603 5-66 (273)
275 3mv2_A Coatomer subunit alpha; 57.0 72 0.0025 31.4 10.6 42 559-600 196-239 (325)
276 3kea_A K1L; tropism, ANK repea 55.5 37 0.0013 33.0 8.8 206 33-257 31-243 (285)
277 3ltm_A Alpha-REP4; protein eng 52.2 1.3E+02 0.0046 27.0 18.8 91 432-527 93-183 (211)
278 1k1a_A B-cell lymphoma 3-encod 49.8 93 0.0032 28.6 10.4 18 141-158 123-140 (241)
279 3ltj_A Alpharep-4; protein eng 49.7 1.4E+02 0.0048 26.6 18.2 18 397-414 150-167 (201)
280 4b4t_P 26S proteasome regulato 49.3 2.5E+02 0.0085 29.2 22.9 26 267-292 141-166 (445)
281 3hra_A Ankyrin repeat family p 48.4 82 0.0028 28.0 9.5 150 38-196 10-172 (201)
282 2lo3_A SAGA-associated factor 48.0 5 0.00017 25.6 0.5 14 726-739 15-28 (44)
283 1k1a_A B-cell lymphoma 3-encod 46.5 1.7E+02 0.0059 26.7 12.0 15 343-357 53-67 (241)
284 4b4t_R RPN7, 26S proteasome re 45.9 43 0.0015 35.0 7.8 96 436-531 133-239 (429)
285 3twe_A Alpha4H; unknown functi 45.5 23 0.00079 19.2 2.7 17 661-677 3-19 (27)
286 3hra_A Ankyrin repeat family p 44.2 1.1E+02 0.0037 27.2 9.6 18 141-158 12-29 (201)
287 1qsa_A Protein (soluble lytic 43.7 3.6E+02 0.012 29.5 35.8 194 378-594 228-439 (618)
288 3kea_A K1L; tropism, ANK repea 43.6 2.2E+02 0.0077 27.1 14.0 190 59-262 27-222 (285)
289 3jxi_A Vanilloid receptor-rela 42.7 46 0.0016 31.5 7.0 88 71-159 12-118 (260)
290 4b4t_R RPN7, 26S proteasome re 42.4 58 0.002 34.0 8.1 96 467-562 133-234 (429)
291 3ltj_A Alpharep-4; protein eng 40.6 2E+02 0.0067 25.6 20.0 48 332-379 27-74 (201)
292 2zu6_B Programmed cell death p 39.5 2.3E+02 0.008 27.7 11.4 73 367-440 169-243 (307)
293 2hgo_A CASSIICOLIN; toxin, dis 38.9 6 0.00021 21.6 -0.1 13 759-771 8-22 (27)
294 3eu9_A Huntingtin-interacting 37.3 1.3E+02 0.0045 27.4 9.2 15 41-55 17-31 (240)
295 3eiq_C Programmed cell death p 36.7 3.4E+02 0.012 27.2 12.9 74 367-441 220-295 (358)
296 2nsz_A Programmed cell death p 36.6 1.8E+02 0.0063 24.1 9.8 64 437-500 10-78 (129)
297 2rfa_A Transient receptor pote 36.0 1.8E+02 0.006 26.5 9.9 19 37-55 7-25 (232)
298 3ltm_A Alpha-REP4; protein eng 35.8 2.4E+02 0.0082 25.2 19.6 92 397-493 93-184 (211)
299 2k0q_A Putative uncharacterize 35.0 12 0.0004 27.1 0.8 20 747-766 8-27 (74)
300 1n11_A Ankyrin; clathrin, BAND 33.4 4E+02 0.014 27.1 16.8 18 341-358 217-234 (437)
301 2r9g_A AAA ATPase, central reg 33.2 2.4E+02 0.0083 25.5 9.2 66 265-331 13-86 (204)
302 3jxi_A Vanilloid receptor-rela 33.2 81 0.0028 29.6 7.1 24 173-196 13-36 (260)
303 4b4t_S RPN3, 26S proteasome re 33.0 4.2E+02 0.014 28.1 12.6 62 433-494 230-299 (523)
304 2ion_A PDCD4, programmed cell 32.4 1.9E+02 0.0065 24.9 8.4 64 437-500 12-80 (152)
305 3eu9_A Huntingtin-interacting 32.2 2.8E+02 0.0095 25.0 10.7 18 240-257 47-64 (240)
306 4a1g_A Mitotic checkpoint seri 32.1 2.4E+02 0.0084 24.2 9.1 76 553-634 52-133 (152)
307 4g8k_A 2-5A-dependent ribonucl 31.4 3.3E+02 0.011 26.5 11.7 246 32-300 24-303 (337)
308 1j0t_A MIH, MOLT-inhibiting ho 31.3 4.9 0.00017 30.2 -1.7 14 726-739 20-33 (78)
309 3aji_A 26S proteasome non-ATPa 31.0 2.6E+02 0.009 25.2 10.2 54 37-95 10-67 (231)
310 2nsz_A Programmed cell death p 30.5 2.3E+02 0.008 23.5 9.7 66 336-401 10-80 (129)
311 3mkr_B Coatomer subunit alpha; 29.7 1.4E+02 0.0047 29.4 7.7 42 559-600 187-230 (320)
312 2wvi_A Mitotic checkpoint seri 29.1 2.9E+02 0.0099 24.1 9.2 76 553-634 47-128 (164)
313 3b7b_A Euchromatic histone-lys 28.9 1.6E+02 0.0055 26.9 8.3 16 141-156 84-99 (237)
314 2d2s_A Exocyst complex compone 27.5 2.6E+02 0.0088 26.1 9.1 22 371-392 25-46 (235)
315 3bge_A Predicted ATPase; struc 27.2 1.9E+02 0.0064 26.1 7.4 47 267-313 8-57 (201)
316 3ygs_P Procaspase 9; apoptosis 27.1 63 0.0022 25.4 4.0 37 44-80 51-87 (97)
317 3esl_A Checkpoint serine/threo 26.2 3.7E+02 0.013 24.4 9.7 31 468-498 118-148 (202)
318 2pk8_A Uncharacterized protein 25.3 34 0.0012 26.3 1.9 29 659-687 13-41 (103)
319 2d2s_A Exocyst complex compone 25.1 1.9E+02 0.0066 27.0 7.7 87 471-561 24-116 (235)
320 3ljn_A Hypothetical protein; a 25.1 2.2E+02 0.0077 28.2 9.1 15 445-459 252-266 (364)
321 3txn_A 26S proteasome regulato 24.7 5.6E+02 0.019 26.0 24.7 214 405-633 105-345 (394)
322 3ctd_A Putative ATPase, AAA fa 24.2 3.3E+02 0.011 24.8 8.5 69 262-330 31-107 (213)
323 3syn_E ATP-binding protein YLX 23.7 38 0.0013 17.7 1.3 17 615-631 3-19 (23)
324 3ljn_A Hypothetical protein; a 23.5 3E+02 0.01 27.2 9.7 49 340-389 57-106 (364)
325 3aji_A 26S proteasome non-ATPa 23.2 2.3E+02 0.0079 25.6 8.1 84 68-156 10-95 (231)
326 3b7b_A Euchromatic histone-lys 23.1 4.1E+02 0.014 23.9 11.0 36 20-55 29-66 (237)
327 3a8g_A NitrIle hydratase subun 23.0 62 0.0021 29.1 3.4 78 656-735 11-114 (207)
328 3qye_A TBC1 domain family memb 22.3 4.6E+02 0.016 25.7 10.6 110 284-393 209-326 (331)
329 2gtq_A Aminopeptidase N; alani 21.9 4.6E+02 0.016 30.0 11.5 147 469-622 680-837 (867)
330 2ion_A PDCD4, programmed cell 21.6 2.5E+02 0.0084 24.1 7.1 24 337-360 13-36 (152)
331 3ebh_A PFA-M1, M1 family amino 21.2 2.1E+02 0.0073 32.8 8.5 122 499-623 730-859 (889)
332 4a1g_A Mitotic checkpoint seri 20.6 4.1E+02 0.014 22.8 8.5 34 335-368 103-136 (152)
333 3bge_A Predicted ATPase; struc 20.5 4.6E+02 0.016 23.6 8.6 44 370-413 10-56 (201)
334 3ygs_P Procaspase 9; apoptosis 20.3 1.1E+02 0.0037 24.1 4.1 39 448-486 51-89 (97)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-42 Score=397.72 Aligned_cols=498 Identities=9% Similarity=-0.031 Sum_probs=363.9
Q ss_pred HHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhcCCCcHHHHH
Q 046775 38 VMYAKCGNFIDSRRLFDAIPERSVVSWNSLFSCYVHCDFLEEAVCFFKEMVLSGIRPNEFSLSSMINACAGSGDSLLGRK 117 (771)
Q Consensus 38 ~~y~~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 117 (771)
..+.++|.+..++..|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..+..+|...|+++.|.+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHH
Confidence 4467788899999999999999999999999999999999999999999985 56888999999999999999999999
Q ss_pred HHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHccCCC-C------------------CcccHHHHHHHHHhCCCh
Q 046775 118 IHGYSIKLGYDSDMFSANALVDMYAKVGNLEDAVAVFKDIEH-P------------------DIVSWNAVIAGCVLHEHN 178 (771)
Q Consensus 118 i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~------------------~~~~~n~li~~~~~~g~~ 178 (771)
++..+... +++..+++.++.+|.++|++++|.++|+++.. . +..+|+.++.+|.+.|++
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 99988654 68889999999999999999999999995443 3 478999999999999999
Q ss_pred hHHHHHHHHHHhCCCCCChhh-HHHHHHHhhcCCcHHH--HHHH-HHHHHHccCCCChhHHHHHHHhhhcCCChHHHHHH
Q 046775 179 DWALKLFQQMKSSEINPNMFT-YTSALKACAGMELKEL--GRQL-HCSLIKMEIKSDPIVGVGLVDMYAKCGSMDEARMI 254 (771)
Q Consensus 179 ~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~--a~~l-~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 254 (771)
++|+++|++|.+. .|+..+ +..+...+...+..+. +..+ +..+...+......+++.++.+|.++|++++|.++
T Consensus 217 ~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 294 (597)
T 2xpi_A 217 DRAKECYKEALMV--DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY 294 (597)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 9999999999885 354433 3333333332222221 1111 44455555556667788889999999999999999
Q ss_pred hhhCCC--CCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCChhHHHHHHHHHHHhcCCCc
Q 046775 255 FHLMPE--KNLIAWNIVISGHLQNGGDMEAASLFPWMYREGVGFDQTTLSTVLKSVASFQAIGVCKQVHALSVKTAFESD 332 (771)
Q Consensus 255 f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~ 332 (771)
|+++.+ ++..+|+.++.+|.+.|++++|+.+|+++.+.+ +.+
T Consensus 295 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------------------------------~~~ 338 (597)
T 2xpi_A 295 LSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID------------------------------------PYN 338 (597)
T ss_dssp HHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------------------TTC
T ss_pred HHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC------------------------------------ccc
Confidence 999987 788888888888888888888888888887543 122
Q ss_pred hHHHhHHHHHHHhcCCHHHHHHHHHhcC---CCceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHh
Q 046775 333 DYIVNSLIDAYGKCGHVEDAVKIFKESS---AVDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNAC 409 (771)
Q Consensus 333 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 409 (771)
..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++..|.+.|++++|.++|+++
T Consensus 339 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------------------- 399 (597)
T 2xpi_A 339 LDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKS------------------- 399 (597)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHH-------------------
Confidence 3334444444444444444444444332 223444444445555555555555544444
Q ss_pred hcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHH
Q 046775 410 ANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIP---DRGIVSWSAMIGGLAQHGRGKEALQ 486 (771)
Q Consensus 410 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 486 (771)
.+.. +.+..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|++
T Consensus 400 ----------------~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 462 (597)
T 2xpi_A 400 ----------------STMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANE 462 (597)
T ss_dssp ----------------HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred ----------------HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 4332 3456677788888888888888888887664 3467788888888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhh---CCCCC--cchHHHHHHHHhhcCCHHHHHHHHHh
Q 046775 487 MFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKF---GIQPM--QEHYACMIDILGRAGKFQEAMELVDT 561 (771)
Q Consensus 487 l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~i~p~--~~~y~~lv~~l~r~g~~~eA~~~~~~ 561 (771)
+|++|.+.. +.+..++..+...|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.+++
T Consensus 463 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (597)
T 2xpi_A 463 YLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541 (597)
T ss_dssp HHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 888888742 3456788888888888888888888888887653 56777 67889999999999999999998888
Q ss_pred CC-CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 046775 562 MP-FQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYAS 614 (771)
Q Consensus 562 m~-~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 614 (771)
+. ..| +..+|..+..+|...|+.+.|...++++++++|+++.+|..|+++|..
T Consensus 542 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 542 GLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 73 445 677899999999999999999999999999999999999999998864
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.9e-42 Score=392.23 Aligned_cols=481 Identities=9% Similarity=-0.067 Sum_probs=402.6
Q ss_pred HHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhcCCcHHHHHHH
Q 046775 140 MYAKVGNLEDAVAVFKDIEHPDIVSWNAVIAGCVLHEHNDWALKLFQQMKSSEINPNMFTYTSALKACAGMELKELGRQL 219 (771)
Q Consensus 140 ~y~~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l 219 (771)
.+.++|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..+..+|...|+++.|..+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 456788888999999999999999999999999999999999999999985 568889999999999999999999999
Q ss_pred HHHHHHccCCCChhHHHHHHHhhhcCCChHHHHHHhhhCCC-C------------------CeehHHHHHHHHHhCCChh
Q 046775 220 HCSLIKMEIKSDPIVGVGLVDMYAKCGSMDEARMIFHLMPE-K------------------NLIAWNIVISGHLQNGGDM 280 (771)
Q Consensus 220 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-~------------------~~~~~~~li~~~~~~g~~~ 280 (771)
+..+... +++..+++.++.+|.++|++++|.++|+++.. . ++.+|+.++.+|.+.|+++
T Consensus 140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 9987643 67899999999999999999999999995443 3 4789999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCChhH---HHHH-HHHHHHhcCCCchHHHhHHHHHHHhcCCHHHHHHHH
Q 046775 281 EAASLFPWMYREGVGFDQTTLSTVLKSVASFQAIGV---CKQV-HALSVKTAFESDDYIVNSLIDAYGKCGHVEDAVKIF 356 (771)
Q Consensus 281 ~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~---a~~i-~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f 356 (771)
+|+++|++|.+.+ |+..+....+..+........ ...+ +..+...+......+++.++.+|.++|++++|.++|
T Consensus 218 ~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 218 RAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 9999999999864 554443333333222221111 1111 344444555556677888899999999999999999
Q ss_pred HhcCC--CceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCch
Q 046775 357 KESSA--VDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDT 434 (771)
Q Consensus 357 ~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~ 434 (771)
+++.+ ++..+|+.++.+|.+.|++++|+++|++|.+.+ +.+..++..++.++...|++++|..++..+.+.. +.+.
T Consensus 296 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 373 (597)
T 2xpi_A 296 SSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKA 373 (597)
T ss_dssp HTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSH
T ss_pred HHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccH
Confidence 99987 889999999999999999999999999999765 3477889999999999999999999999998765 6788
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 046775 435 FAGNSLVNMYAKCGSIDDADRAFSEIP---DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACN 511 (771)
Q Consensus 435 ~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 511 (771)
.+++.++.+|.++|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+.+ +++..++..++.+|.
T Consensus 374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 452 (597)
T 2xpi_A 374 VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHM 452 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 999999999999999999999999875 4568899999999999999999999999999853 447789999999999
Q ss_pred ccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC--HhHHHHHHHHHHhcC
Q 046775 512 HAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTM-------PFQAN--ASVWGALLGAARIYK 582 (771)
Q Consensus 512 ~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-------~~~p~--~~~~~~ll~a~~~~~ 582 (771)
+.|++++|.++|+++.+.. +.+...|.+++++|.+.|++++|.++++++ +..|+ ..+|..+..+|..+|
T Consensus 453 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 530 (597)
T 2xpi_A 453 QLGNILLANEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530 (597)
T ss_dssp HHTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc
Confidence 9999999999999998652 335788999999999999999999999988 55787 679999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 046775 583 NVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 583 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
+.+.|...++++++++|+++.+|..|+++|...|+|++|.+.++.+.+.
T Consensus 531 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999988765
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=5.4e-27 Score=257.71 Aligned_cols=184 Identities=13% Similarity=0.168 Sum_probs=173.6
Q ss_pred ecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhccc---------chHHHHHHHHHHHHhCCCCchh
Q 046775 365 VACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLS---------AYEQGKQVHVHIIKFGFMSDTF 435 (771)
Q Consensus 365 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~---------~~~~a~~i~~~~~~~g~~~~~~ 435 (771)
..++.+|.+|++.|+.++|+++|++|.+.|++||.+||+++|.+|+..+ .++.|.++++.|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 4578889999999999999999999999999999999999999998654 4788999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 046775 436 AGNSLVNMYAKCGSIDDADRAFSEIP----DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACN 511 (771)
Q Consensus 436 ~~~~Li~~y~k~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 511 (771)
+||+||++|+++|++++|.++|++|. .||+.+||+||.+|++.|+.++|.++|++|.+.|+.||..||++|+.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999997 67999999999999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhc
Q 046775 512 HAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRA 549 (771)
Q Consensus 512 ~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~ 549 (771)
+.|++++|.++|++|.+. |+.|+..+|+.+++.+.+.
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999876 9999999999999998764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=5.5e-24 Score=229.12 Aligned_cols=276 Identities=15% Similarity=0.087 Sum_probs=200.2
Q ss_pred HhHHHHHHHhcCCHHHHHHHHHhcCC---CceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcc
Q 046775 336 VNSLIDAYGKCGHVEDAVKIFKESSA---VDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANL 412 (771)
Q Consensus 336 ~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 412 (771)
+..+...|.+.|++++|.+.|+++.. .+...|..+...|.+.|++++|++.|+++.... +.+..++..+...+...
T Consensus 104 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 182 (388)
T 1w3b_A 104 YINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQ 182 (388)
T ss_dssp HHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 33344444444444444444433221 122334444445555555555555555555431 12234555555555566
Q ss_pred cchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHH
Q 046775 413 SAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIP---DRGIVSWSAMIGGLAQHGRGKEALQMFG 489 (771)
Q Consensus 413 ~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~ 489 (771)
|++++|...+..+++.+ +.+...+..+...|...|++++|...|++.. ..+..+|..+...|...|++++|++.|+
T Consensus 183 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 261 (388)
T 1w3b_A 183 GEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR 261 (388)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666666665554 4456677778888888888888888887654 3457788999999999999999999999
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC
Q 046775 490 QMLEDGVLPN-HITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMP-FQAN 567 (771)
Q Consensus 490 ~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p~ 567 (771)
++.+. .|+ ..++..+..++...|++++|..+|+++.+. .+++...|..++.++.+.|++++|.+.++++. ..|+
T Consensus 262 ~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 337 (388)
T 1w3b_A 262 RAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337 (388)
T ss_dssp HHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT
T ss_pred HHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 99984 454 568888999999999999999999999865 24457889999999999999999999999873 5564
Q ss_pred -HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 046775 568 -ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGM 617 (771)
Q Consensus 568 -~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 617 (771)
..+|..+...+...|+.+.|...++++++++|+++.+|..++++|...|+
T Consensus 338 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 338 FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 56899999999999999999999999999999999999999999988764
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=1.7e-26 Score=253.76 Aligned_cols=184 Identities=13% Similarity=0.086 Sum_probs=169.4
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhcCCC---------cHHHHHHHHHHHHhCCCCChh
Q 046775 62 VSWNSLFSCYVHCDFLEEAVCFFKEMVLSGIRPNEFSLSSMINACAGSGD---------SLLGRKIHGYSIKLGYDSDMF 132 (771)
Q Consensus 62 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~a~~i~~~~~~~g~~~~~~ 132 (771)
..++.+|.+|++.|+.++|+++|++|.+.|++||.+||++||.+|++.+. ++.|.++|+.|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35788899999999999999999999999999999999999999987654 577899999999999999999
Q ss_pred hHHHHHHHHHhcCChhHHHHHHccCCC----CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhh
Q 046775 133 SANALVDMYAKVGNLEDAVAVFKDIEH----PDIVSWNAVIAGCVLHEHNDWALKLFQQMKSSEINPNMFTYTSALKACA 208 (771)
Q Consensus 133 ~~~~Li~~y~~~g~~~~A~~~f~~~~~----~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 208 (771)
+||+||++|++.|++++|.++|++|.. ||.++||+||.+|++.|+.++|.++|++|.+.|+.||..||+++|.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999864 8999999999999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHHHccCCCChhHHHHHHHhhhcC
Q 046775 209 GMELKELGRQLHCSLIKMEIKSDPIVGVGLVDMYAKC 245 (771)
Q Consensus 209 ~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~ 245 (771)
+.|+.++|.++++.|.+.|..|+..+|+.|+..|+..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999988764
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=2.9e-23 Score=223.42 Aligned_cols=350 Identities=18% Similarity=0.177 Sum_probs=294.3
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHh-hHHHHHHHHhccCChhHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcCCH
Q 046775 271 SGHLQNGGDMEAASLFPWMYREGVGFDQT-TLSTVLKSVASFQAIGVCKQVHALSVKTAFESDDYIVNSLIDAYGKCGHV 349 (771)
Q Consensus 271 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~ 349 (771)
..+.+.|++++|+..+.++.+. .|+.. .+..+-..+...++++.+...+..+++.. +.+...+..+...|.+.|++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 4455667777777777766654 24433 33344445566677777777777766653 56778899999999999999
Q ss_pred HHHHHHHHhcC---CCceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHh-hHHHHHHHhhcccchHHHHHHHHHH
Q 046775 350 EDAVKIFKESS---AVDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSF-VCSSLLNACANLSAYEQGKQVHVHI 425 (771)
Q Consensus 350 ~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~~ 425 (771)
++|.+.|+++. +.+..+|..+...|.+.|++++|++.|+++.+. .|+.. .+..+...+...|++++|...+..+
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999864 345567999999999999999999999999874 46554 5566777888899999999999999
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HH
Q 046775 426 IKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIP---DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPN-HI 501 (771)
Q Consensus 426 ~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~ 501 (771)
.+.. +.+..+++.+...|.+.|++++|...|+++. ..+...|..+...+...|++++|+..|++... +.|+ ..
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~ 238 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNHAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTCHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCCHH
Confidence 9875 5678899999999999999999999999876 34467899999999999999999999999998 4565 56
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhCC-C-CCCHhHHHHHHHHH
Q 046775 502 TLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAMELVDTMP-F-QANASVWGALLGAA 578 (771)
Q Consensus 502 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~-~p~~~~~~~ll~a~ 578 (771)
++..+..++...|++++|...|+++.+. .|+ ...|..++.++.+.|++++|.+.++++. . +++..+|..+...+
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence 8889999999999999999999999864 554 6789999999999999999999999873 3 34677999999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 046775 579 RIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 579 ~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
...|+.+.|...+++++++.|+++.++..++.+|...|++++|.+.++.+.+.
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999988754
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=2.9e-23 Score=228.04 Aligned_cols=224 Identities=13% Similarity=0.097 Sum_probs=183.5
Q ss_pred HhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHH
Q 046775 408 ACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIP---DRGIVSWSAMIGGLAQHGRGKEA 484 (771)
Q Consensus 408 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A 484 (771)
.+...|+++.|...+..+.+.. +.+..++..+..+|.++|++++|.+.|+.+. ..+..+|+.+...|...|++++|
T Consensus 152 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 230 (450)
T 2y4t_A 152 NAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELS 230 (450)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 3455667777777777766654 5577788889999999999999999998875 45678999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHH-HHHH------------HHHHhccCcHHHHHHHHHHHHHhhCCCCC-----cchHHHHHHHH
Q 046775 485 LQMFGQMLEDGVLPNHIT-LVSV------------LCACNHAGLVAEAKHHFESMEKKFGIQPM-----QEHYACMIDIL 546 (771)
Q Consensus 485 ~~l~~~m~~~g~~pd~~t-~~~l------------l~a~~~~g~~~~a~~~~~~m~~~~~i~p~-----~~~y~~lv~~l 546 (771)
+..|+++.. ..|+..+ +..+ ..+|.+.|++++|..+|+++.+. .|+ ..+|.+++.++
T Consensus 231 ~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~ 305 (450)
T 2y4t_A 231 LSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCF 305 (450)
T ss_dssp HHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHH
Confidence 999999997 5666544 3333 78899999999999999999865 455 45899999999
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH------------HHH
Q 046775 547 GRAGKFQEAMELVDTM-PFQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLS------------NIY 612 (771)
Q Consensus 547 ~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~------------~~y 612 (771)
.+.|++++|.+.++++ ...| +..+|..+..+|...|+.+.|...++++++++|+++..+..|+ +.|
T Consensus 306 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y 385 (450)
T 2y4t_A 306 SKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYY 385 (450)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSG
T ss_pred HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHH
Confidence 9999999999999987 3455 5679999999999999999999999999999999999999999 678
Q ss_pred HhcC--CchhHHHHHHHHHhCCCccCC
Q 046775 613 ASAG--MWDNVAKVRRFMKDNKLKKEP 637 (771)
Q Consensus 613 ~~~g--~~~~a~~~~~~m~~~g~~k~~ 637 (771)
...| ++.+..++++.+++..++..|
T Consensus 386 ~~lg~~~~~~~~~~~~~y~~~~l~~~p 412 (450)
T 2y4t_A 386 KILGVKRNAKKQEIIKAYRKLALQWHP 412 (450)
T ss_dssp GGSCSSTTCCTTHHHHHHHHHHHHSCG
T ss_pred HHhCCCccCCHHHHHHHHHHHHHHhCC
Confidence 8888 555455666666665555555
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.9e-21 Score=217.29 Aligned_cols=437 Identities=7% Similarity=-0.067 Sum_probs=220.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhcCCcHHHHHHHHHHHHHccCCCChhHHHHHHHhhhc
Q 046775 165 WNAVIAGCVLHEHNDWALKLFQQMKSSEINPNMFTYTSALKACAGMELKELGRQLHCSLIKMEIKSDPIVGVGLVDMYAK 244 (771)
Q Consensus 165 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~ 244 (771)
|......+.+.|++++|+..|+++.... ||..++..+..++...|+++.|...+..+++.. +.+...+..+..+|.+
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence 3344445555556666666665555542 455555555555555555555555555555543 2234445555555555
Q ss_pred CCChHHHHHHhhhCCC---CCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCChhHHHHHH
Q 046775 245 CGSMDEARMIFHLMPE---KNLIAWNIVISGHLQNGGDMEAASLFPWMYREGVGFDQTTLSTVLKSVASFQAIGVCKQVH 321 (771)
Q Consensus 245 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~ 321 (771)
.|++++|...|+.+.. .+......++..+........+.+.+..+...+..|+...+..-...............+.
T Consensus 86 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred HhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 5555555555554432 1222222233322222222222222222221111111111111000000000000011111
Q ss_pred HHHHHhcC---------CCchHHHhHHHHHHHh---cCCHHHHHHHHHhcCC-----------------CceecHHHHHH
Q 046775 322 ALSVKTAF---------ESDDYIVNSLIDAYGK---CGHVEDAVKIFKESSA-----------------VDLVACTSMIT 372 (771)
Q Consensus 322 ~~~~~~g~---------~~~~~~~~~Li~~y~k---~g~~~~A~~~f~~~~~-----------------~~~~~~~~li~ 372 (771)
..+..... +.+...+..+...+.. .|++++|...|+++.. .+..+|..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 11110000 1122333333333332 6667777666655332 12345666666
Q ss_pred HHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 046775 373 AYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDD 452 (771)
Q Consensus 373 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~ 452 (771)
.|...|++++|+..|+++.... |+..++..+...+...|+++.|...+..+.+.. +.+..++..+...|.+.|++++
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 6777777777777777766543 335556666666666677777766666666544 3455566666666667777777
Q ss_pred HHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 046775 453 ADRAFSEIP---DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKK 529 (771)
Q Consensus 453 A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 529 (771)
|...|+... ..+...|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|..+|+.+.+.
T Consensus 323 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 323 AGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL 401 (514)
T ss_dssp HHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 766666543 3345566666666666677777777776666531 223445666666666667777777766666544
Q ss_pred hCCCCC----cchHHHHHHHHhh---cCCHHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 046775 530 FGIQPM----QEHYACMIDILGR---AGKFQEAMELVDTMP-FQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPE 600 (771)
Q Consensus 530 ~~i~p~----~~~y~~lv~~l~r---~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 600 (771)
..-.|. ...|..++.++.+ .|++++|.+.++++- ..| +..+|..+...+...|+.+.|...++++++++|+
T Consensus 402 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 402 ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 222222 2256666666666 666777666666552 233 3445666666666666777777777777777666
Q ss_pred CchhHHHH
Q 046775 601 KSSTHVLL 608 (771)
Q Consensus 601 ~~~~~~~l 608 (771)
++..+..+
T Consensus 482 ~~~~~~~~ 489 (514)
T 2gw1_A 482 MEEKLQAI 489 (514)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHH
Confidence 66555544
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=5e-21 Score=213.88 Aligned_cols=426 Identities=10% Similarity=-0.024 Sum_probs=317.4
Q ss_pred hHHHHHHHhhcCCcHHHHHHHHHHHHHccCCCChhHHHHHHHhhhcCCChHHHHHHhhhCCC---CCeehHHHHHHHHHh
Q 046775 199 TYTSALKACAGMELKELGRQLHCSLIKMEIKSDPIVGVGLVDMYAKCGSMDEARMIFHLMPE---KNLIAWNIVISGHLQ 275 (771)
Q Consensus 199 t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~ 275 (771)
.+...-..+...|+++.|...+..+++.. |+...+..+..+|.+.|++++|...|+.+.+ .+..+|..+...|.+
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 45555667888999999999999999976 6888999999999999999999999998754 355689999999999
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCChhHHHHHHHHHHHhcCCCchHHHhH---HHHHHHhcCCHHHH
Q 046775 276 NGGDMEAASLFPWMYREGVGFDQTTLSTVLKSVASFQAIGVCKQVHALSVKTAFESDDYIVNS---LIDAYGKCGHVEDA 352 (771)
Q Consensus 276 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~---Li~~y~k~g~~~~A 352 (771)
.|++++|+..|+++...+. ++.......+..+........+.+.++.+.+.+..++...... .............+
T Consensus 86 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 9999999999999988763 4445555555544443333333333322222111111110000 00011111111222
Q ss_pred HHHHHhcCC----------CceecHHHHHHHHHH---cCChHHHHHHHHHHhc-----CCCCC--------CHhhHHHHH
Q 046775 353 VKIFKESSA----------VDLVACTSMITAYAQ---FGLGEEALKLYLEMQD-----REINP--------DSFVCSSLL 406 (771)
Q Consensus 353 ~~~f~~~~~----------~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~-----~g~~p--------~~~t~~~ll 406 (771)
...+..... .+...|......+.. .|++++|+..|+++.. ..-.| +..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 222222111 123344444444444 8999999999999987 31122 345677778
Q ss_pred HHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHH
Q 046775 407 NACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIP---DRGIVSWSAMIGGLAQHGRGKE 483 (771)
Q Consensus 407 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~ 483 (771)
..+...|+++.|...+..+.+.... ..++..+...|.+.|++++|...|+.+. ..+...|..+...|...|++++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHH
Confidence 8889999999999999999988743 8889999999999999999999999865 3457789999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-
Q 046775 484 ALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTM- 562 (771)
Q Consensus 484 A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m- 562 (771)
|+..|+++.+.. +.+..++..+...+...|++++|..+|+.+.+.. +.+...+..+..++.+.|++++|.+.++++
T Consensus 323 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 323 AGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999852 2345688888999999999999999999998652 234678899999999999999999999876
Q ss_pred ---CCCCC----HhHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 046775 563 ---PFQAN----ASVWGALLGAARI---YKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDNK 632 (771)
Q Consensus 563 ---~~~p~----~~~~~~ll~a~~~---~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 632 (771)
|-.|+ ..+|..+...+.. .|+.+.|...++++++++|+++.++..++.+|...|++++|.+.++...+..
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 32333 3488899999999 9999999999999999999999999999999999999999999998877653
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.86 E-value=1.9e-19 Score=202.30 Aligned_cols=418 Identities=11% Similarity=0.022 Sum_probs=216.4
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhcCCcHHHHHHHHHHHHHccCCCChhHHHHHHHhhh
Q 046775 164 SWNAVIAGCVLHEHNDWALKLFQQMKSSEINPNMFTYTSALKACAGMELKELGRQLHCSLIKMEIKSDPIVGVGLVDMYA 243 (771)
Q Consensus 164 ~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~ 243 (771)
.|..+...+.+.|++++|++.|+++.... +.+..++..+..++...|+++.|.+.+..+++.. +.+...+..+...|.
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH
Confidence 45555666666677777777776666542 2244555566666666666666666666666654 235566667777778
Q ss_pred cCCChHHHHHHhhhCCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHHC------CCCCCHhhHHHHHHHHhccCChhHH
Q 046775 244 KCGSMDEARMIFHLMPEKNLIAWNIVISGHLQNGGDMEAASLFPWMYRE------GVGFDQTTLSTVLKSVASFQAIGVC 317 (771)
Q Consensus 244 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~pd~~t~~~ll~a~~~~~~~~~a 317 (771)
..|+.++|...|+.+. .+....+..+..+...+...+|+..++++... ...|+...+..
T Consensus 105 ~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~-------------- 169 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS-------------- 169 (537)
T ss_dssp HHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHH--------------
T ss_pred HcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHH--------------
Confidence 8888888888776432 22222333344555555567777777777542 22233333322
Q ss_pred HHHHHHHHHhcCCCchHHHhHHHHHHHhcCCHHHHHHHHHhcCCCcee---cHHHHHHHHH--------HcCChHHHHHH
Q 046775 318 KQVHALSVKTAFESDDYIVNSLIDAYGKCGHVEDAVKIFKESSAVDLV---ACTSMITAYA--------QFGLGEEALKL 386 (771)
Q Consensus 318 ~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~--------~~g~~~~A~~l 386 (771)
|....+.+.+...+......+.. .+..+...+. ..|++++|+.+
T Consensus 170 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~ 224 (537)
T 3fp2_A 170 -------------------------FFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDM 224 (537)
T ss_dssp -------------------------HHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHH
T ss_pred -------------------------HHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 22223333333333222222211 1111111111 11244555555
Q ss_pred HHHHhcCCCCCCH--------hhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 046775 387 YLEMQDREINPDS--------FVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFS 458 (771)
Q Consensus 387 ~~~m~~~g~~p~~--------~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~ 458 (771)
|+++.+. .|+. .++..+...+...|+++.|...+..+.+.. |+...+..+...|.+.|++++|...|+
T Consensus 225 ~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~ 300 (537)
T 3fp2_A 225 YHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQ 300 (537)
T ss_dssp HHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHH
T ss_pred HHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHH
Confidence 5555432 2221 123333334444455555555555555543 224455555555555555555555555
Q ss_pred hCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC
Q 046775 459 EIP---DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPN-HITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQP 534 (771)
Q Consensus 459 ~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p 534 (771)
.+. ..+..+|..+...|...|++++|++.|+++.+. .|+ ..++..+...+...|++++|..+|+.+.+.. +.
T Consensus 301 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~ 376 (537)
T 3fp2_A 301 KAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PT 376 (537)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT
T ss_pred HHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC
Confidence 443 223455555666666666666666666666553 232 3455555556666666666666666655431 12
Q ss_pred CcchHHHHHHHHhhcCCHHHHHHHHHhC----CCCC----CHhHHHHHHHHHHhc----------CCHHHHHHHHHHHHh
Q 046775 535 MQEHYACMIDILGRAGKFQEAMELVDTM----PFQA----NASVWGALLGAARIY----------KNVEVGQHAAEMLFA 596 (771)
Q Consensus 535 ~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p----~~~~~~~ll~a~~~~----------~~~~~a~~~~~~~~~ 596 (771)
+...+..+..++.+.|++++|.+.++++ |..+ ....+..+...+... |+.+.|...++++++
T Consensus 377 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 456 (537)
T 3fp2_A 377 LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE 456 (537)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH
Confidence 2445555666666666666666666554 1111 111223333444445 777777777777777
Q ss_pred cCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 046775 597 IEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 597 l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
++|+++.++..++.+|...|++++|.+.++...+.
T Consensus 457 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 457 LDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 77777777777777777777777777776666543
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.86 E-value=8e-19 Score=197.26 Aligned_cols=448 Identities=10% Similarity=-0.010 Sum_probs=297.9
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCCChhhHHHHHHH
Q 046775 61 VVSWNSLFSCYVHCDFLEEAVCFFKEMVLSGIRPNEFSLSSMINACAGSGDSLLGRKIHGYSIKLGYDSDMFSANALVDM 140 (771)
Q Consensus 61 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~ 140 (771)
...|..+...+.+.|++++|+..|+++.... +.+..++..+..++...|+++.|.+.+..+++.. +.+..++..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 3456777778888888888888888887753 2355677777777888888888888888888776 4566777788888
Q ss_pred HHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhcCCcHHHHHHHH
Q 046775 141 YAKVGNLEDAVAVFKDIEHPDIVSWNAVIAGCVLHEHNDWALKLFQQMKSSEINPNMFTYTSALKACAGMELKELGRQLH 220 (771)
Q Consensus 141 y~~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~ 220 (771)
|.+.|++++|.+.|+.+. .+....+..+..+...+...+|+..++++.... |+..
T Consensus 103 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~~~---------------------- 157 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKD--EGRG---------------------- 157 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC------------------------------
T ss_pred HHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC--cccc----------------------
Confidence 888888888888886432 222222333444555555667777777765431 1000
Q ss_pred HHHHHccCCCChhHHHHHHHhhhcCCChHHHHHHhhhCCCCCee---hHHHHHHHHHhC--------CChhHHHHHHHHH
Q 046775 221 CSLIKMEIKSDPIVGVGLVDMYAKCGSMDEARMIFHLMPEKNLI---AWNIVISGHLQN--------GGDMEAASLFPWM 289 (771)
Q Consensus 221 ~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~---~~~~li~~~~~~--------g~~~~A~~~~~~m 289 (771)
....|+ ...+..|....+.+.+...+......+.. .+..+...+... |++++|+.+|+++
T Consensus 158 -----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~ 228 (537)
T 3fp2_A 158 -----SQVLPS----NTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSL 228 (537)
T ss_dssp ------CCCCC----HHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----ccccch----HhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 000111 11222344455556666666555543332 222222222111 2334444444444
Q ss_pred HHCCCCCCHhhHHHHHHHHhccCChhHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcCCHHHHHHHHHhcCCCceecHHH
Q 046775 290 YREGVGFDQTTLSTVLKSVASFQAIGVCKQVHALSVKTAFESDDYIVNSLIDAYGKCGHVEDAVKIFKESSAVDLVACTS 369 (771)
Q Consensus 290 ~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~ 369 (771)
.+.. |+ +..++..+. .+|..
T Consensus 229 l~~~--p~----------------------------------~~~~~~~~~------------------------~~~~~ 248 (537)
T 3fp2_A 229 LSAN--TV----------------------------------DDPLRENAA------------------------LALCY 248 (537)
T ss_dssp HC----CC----------------------------------CHHHHHHHH------------------------HHHHH
T ss_pred HHHC--CC----------------------------------cchhhHHHH------------------------HHHHH
Confidence 3321 11 111111111 12344
Q ss_pred HHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 046775 370 MITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGS 449 (771)
Q Consensus 370 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~ 449 (771)
+...+...|++++|+..|++.... .|+..++..+...+...|+++.|...+..+.+.. +.+..++..+...|.+.|+
T Consensus 249 ~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 325 (537)
T 3fp2_A 249 TGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQD 325 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCC
Confidence 555677778888888888888764 4667777788888888899999999998888876 5677889999999999999
Q ss_pred HHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 046775 450 IDDADRAFSEIP---DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESM 526 (771)
Q Consensus 450 ~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 526 (771)
+++|...|++.. ..+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++|..+|+.+
T Consensus 326 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 326 YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999999875 3456789999999999999999999999999852 334557888889999999999999999998
Q ss_pred HHhhCCCCC----cchHHHHHHHHhhc----------CCHHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhcCCHHHHHHH
Q 046775 527 EKKFGIQPM----QEHYACMIDILGRA----------GKFQEAMELVDTMP-FQA-NASVWGALLGAARIYKNVEVGQHA 590 (771)
Q Consensus 527 ~~~~~i~p~----~~~y~~lv~~l~r~----------g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~~~~~~a~~~ 590 (771)
.+...-.+. ...+.....++.+. |++++|.+.+++.- ..| +..+|..+...+...|+.+.|...
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 484 (537)
T 3fp2_A 405 KRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIEL 484 (537)
T ss_dssp HHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 765321222 12244556777777 99999999999873 445 456899999999999999999999
Q ss_pred HHHHHhcCCCCchhHHHH
Q 046775 591 AEMLFAIEPEKSSTHVLL 608 (771)
Q Consensus 591 ~~~~~~l~p~~~~~~~~l 608 (771)
+++++++.|+++.....+
T Consensus 485 ~~~al~~~~~~~~~~~~~ 502 (537)
T 3fp2_A 485 FEDSAILARTMDEKLQAT 502 (537)
T ss_dssp HHHHHHHC--CHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHH
Confidence 999999999887765433
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.85 E-value=4.8e-19 Score=194.30 Aligned_cols=294 Identities=11% Similarity=0.046 Sum_probs=221.4
Q ss_pred chHHHhHHHHHHHhcCCHHHHHHHHHhcC---CCceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHH
Q 046775 332 DDYIVNSLIDAYGKCGHVEDAVKIFKESS---AVDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNA 408 (771)
Q Consensus 332 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 408 (771)
+...+..+...|.+.|++++|...|+++. +.+..+|..+...|.+.|++++|+..|+++.+.+ +.+..++..+..+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 34455556666666666666666665543 2345556666666666666666666666665532 2234455555566
Q ss_pred hhcccchHHHHHHHHHHHHhCCCCch---hHHHHH------------HHHHHhcCCHHHHHHHHhhCC---CCChhHHHH
Q 046775 409 CANLSAYEQGKQVHVHIIKFGFMSDT---FAGNSL------------VNMYAKCGSIDDADRAFSEIP---DRGIVSWSA 470 (771)
Q Consensus 409 ~~~~~~~~~a~~i~~~~~~~g~~~~~---~~~~~L------------i~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~ 470 (771)
+...|++++|...+..+.+.. +.+. ..+..+ ...|.+.|++++|...|+.+. ..+...|..
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 182 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELREL 182 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 666666666666666665543 2233 333333 455889999999999999876 456788999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHH-------
Q 046775 471 MIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACM------- 542 (771)
Q Consensus 471 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~l------- 542 (771)
+...|.+.|++++|++.|+++.+.. +.+..++..+...+...|++++|..+|+.+.+. .|+ ...+..+
T Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 183 RAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCChHHHHHHHHHHHHHH
Confidence 9999999999999999999999852 445678999999999999999999999999854 555 3334444
Q ss_pred -----HHHHhhcCCHHHHHHHHHhCC-CCCC-----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 046775 543 -----IDILGRAGKFQEAMELVDTMP-FQAN-----ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNI 611 (771)
Q Consensus 543 -----v~~l~r~g~~~eA~~~~~~m~-~~p~-----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 611 (771)
+..+.+.|++++|.+.++++- ..|+ ...|..+...+...|+.+.|...++++++++|+++.+|..++.+
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 338 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEA 338 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 889999999999999999872 4454 34778888899999999999999999999999999999999999
Q ss_pred HHhcCCchhHHHHHHHHHhC
Q 046775 612 YASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 612 y~~~g~~~~a~~~~~~m~~~ 631 (771)
|...|++++|.+.++.+.+.
T Consensus 339 ~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 339 YLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999988764
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.80 E-value=6.1e-17 Score=171.20 Aligned_cols=302 Identities=10% Similarity=0.003 Sum_probs=197.4
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcCCHHHHHHHHHhcC---CCceecHHHHHHHHHH
Q 046775 300 TLSTVLKSVASFQAIGVCKQVHALSVKTAFESDDYIVNSLIDAYGKCGHVEDAVKIFKESS---AVDLVACTSMITAYAQ 376 (771)
Q Consensus 300 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~ 376 (771)
.+..+-..+...|+++.|...+..+++.. +.+..++..+...|...|++++|...|++.. +.+...|..+...|.+
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 34444445555566666666666555543 2344555555555666666666666555432 2234455555555555
Q ss_pred cCChHHHHHHHHHHhcCCCCC---CHh-hHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 046775 377 FGLGEEALKLYLEMQDREINP---DSF-VCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDD 452 (771)
Q Consensus 377 ~g~~~~A~~l~~~m~~~g~~p---~~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~ 452 (771)
.|++++|+..|++.... .| +.. .+..+.. +.. ......+...|...|++++
T Consensus 84 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~-------~~~----------------~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVK-------ADE----------------MQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp HTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHH-------HHH----------------HHHHHHHHHHHHHTTCHHH
T ss_pred cCChHHHHHHHHHHHhc--CCcccChHHHHHHHHH-------HHH----------------HHHHHHHHHHHHHccCHHH
Confidence 66666666666555542 23 111 1111100 000 0112223567778888888
Q ss_pred HHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 046775 453 ADRAFSEIP---DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKK 529 (771)
Q Consensus 453 A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 529 (771)
|...|+.+. ..+...|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...|+...+.
T Consensus 139 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 139 AITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 888888764 3456777888888888888888888888888742 334557777778888888888888888887754
Q ss_pred hCCCCCc-chHH------------HHHHHHhhcCCHHHHHHHHHhCC-CCCCHh-----HHHHHHHHHHhcCCHHHHHHH
Q 046775 530 FGIQPMQ-EHYA------------CMIDILGRAGKFQEAMELVDTMP-FQANAS-----VWGALLGAARIYKNVEVGQHA 590 (771)
Q Consensus 530 ~~i~p~~-~~y~------------~lv~~l~r~g~~~eA~~~~~~m~-~~p~~~-----~~~~ll~a~~~~~~~~~a~~~ 590 (771)
.|+. ..+. .++..+.+.|++++|.+.++++. ..|+.. .|..+...+...|+.+.|...
T Consensus 218 ---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 218 ---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 3442 2222 23667889999999999988762 344422 344566788889999999999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 046775 591 AEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 591 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
++++++++|+++..+..++.+|...|++++|.+.++...+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 295 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999877654
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.80 E-value=3.8e-17 Score=172.77 Aligned_cols=321 Identities=12% Similarity=-0.005 Sum_probs=241.4
Q ss_pred eehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCChhHHHHHHHHHHHhcCCCchHHHhHHHHH
Q 046775 263 LIAWNIVISGHLQNGGDMEAASLFPWMYREGVGFDQTTLSTVLKSVASFQAIGVCKQVHALSVKTAFESDDYIVNSLIDA 342 (771)
Q Consensus 263 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~ 342 (771)
+..|..+...+...|++++|+..|+++.... +.+..++..+-..+...|+++.|...+..+.+.. +.+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 3456777888888999999999999888753 3456677778888889999999999999988874 4466889999999
Q ss_pred HHhcCCHHHHHHHHHhcCCCce------ecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchH
Q 046775 343 YGKCGHVEDAVKIFKESSAVDL------VACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYE 416 (771)
Q Consensus 343 y~k~g~~~~A~~~f~~~~~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 416 (771)
|.+.|++++|...|++....++ ..|..+...+. ...+......+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 9999999999999998755333 33333321100 011222333455556666
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046775 417 QGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIP---DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLE 493 (771)
Q Consensus 417 ~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 493 (771)
.|...+..+.+.. +.+..++..+...|.+.|++++|...|+... ..+...|..+...|...|++++|+..|++..+
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666666665554 4556677778888888888888888888765 34567888888888888899999998888887
Q ss_pred CCCCCCHH-HHH------------HHHHHHhccCcHHHHHHHHHHHHHhhCCCCCc-----chHHHHHHHHhhcCCHHHH
Q 046775 494 DGVLPNHI-TLV------------SVLCACNHAGLVAEAKHHFESMEKKFGIQPMQ-----EHYACMIDILGRAGKFQEA 555 (771)
Q Consensus 494 ~g~~pd~~-t~~------------~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~-----~~y~~lv~~l~r~g~~~eA 555 (771)
. .|+.. ++. .+...+...|++++|..+|+.+.+. .|+. ..|..+..++.+.|++++|
T Consensus 217 ~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 217 L--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp H--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred h--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 3 45433 222 2356688899999999999998865 3442 2355678899999999999
Q ss_pred HHHHHhCC-CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 046775 556 MELVDTMP-FQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYAS 614 (771)
Q Consensus 556 ~~~~~~m~-~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 614 (771)
.+.+++.- ..| +..+|..+...+...|+.+.|...++++++++|+++..+..|..++..
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 292 IRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 99998873 455 566899999999999999999999999999999999998888877654
No 15
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.80 E-value=6.2e-15 Score=170.89 Aligned_cols=547 Identities=13% Similarity=0.094 Sum_probs=379.4
Q ss_pred CCCChhhHHHHHHHHHcCCChHHHHHHHhcCCC---------------CCc---------c-------------hHHHHH
Q 046775 26 FDSDEFVANSLVVMYAKCGNFIDSRRLFDAIPE---------------RSV---------V-------------SWNSLF 68 (771)
Q Consensus 26 ~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~---------------~~~---------~-------------~~n~li 68 (771)
+..|+.+....|.+.++.|++.+..++-.+-.- +|. . .....|
T Consensus 721 ~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~i 800 (1630)
T 1xi4_A 721 FSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYI 800 (1630)
T ss_pred ccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHHHHHHhcCchhHH
Confidence 556899999999999999999888887654211 111 0 112345
Q ss_pred HHHHhCCChhHHHHHHHHhHHCCCC-----------CCcchHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCCChhhHHHH
Q 046775 69 SCYVHCDFLEEAVCFFKEMVLSGIR-----------PNEFSLSSMINACAGSGDSLLGRKIHGYSIKLGYDSDMFSANAL 137 (771)
Q Consensus 69 ~~~~~~g~~~~A~~l~~~m~~~g~~-----------p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~L 137 (771)
..|++.-++..+-.+...+...+.. .+.....-|+..+-+.++++.....++.-+..| ..++.++|+|
T Consensus 801 e~yv~~vnp~~~p~Vvg~lld~d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnal 879 (1630)
T 1xi4_A 801 EIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNAL 879 (1630)
T ss_pred HHHHhccCCcccchhhhhhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHH
Confidence 5666554444444444333322111 122223444555555666666777777777778 6788999999
Q ss_pred HHHHHhcCChhHHHHHHccCC------------CCCccc----------HHHHHHHHHhCCChhHHHH------------
Q 046775 138 VDMYAKVGNLEDAVAVFKDIE------------HPDIVS----------WNAVIAGCVLHEHNDWALK------------ 183 (771)
Q Consensus 138 i~~y~~~g~~~~A~~~f~~~~------------~~~~~~----------~n~li~~~~~~g~~~~A~~------------ 183 (771)
...|...++-.+. .+.+=+ ++|... -.-||....+++.+...-+
T Consensus 880 akiyid~n~npe~--fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~ 957 (1630)
T 1xi4_A 880 AKIYIDSNNNPER--FLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWG 957 (1630)
T ss_pred HHHHhccCCCHHH--HhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHH
Confidence 9999976543332 111110 122110 1123333333333221111
Q ss_pred ------------HHHHHHh----CCCCCChhhHHHHHHHhhcCCcHHHHHHHHHHHHHcc--CCCChhHHHHHHHhhhcC
Q 046775 184 ------------LFQQMKS----SEINPNMFTYTSALKACAGMELKELGRQLHCSLIKME--IKSDPIVGVGLVDMYAKC 245 (771)
Q Consensus 184 ------------l~~~m~~----~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g--~~~~~~~~~~Li~~y~~~ 245 (771)
+.+.-.. ....|+. .+...+++...|...++.++++.++..+ +..+....+.|+.+..+.
T Consensus 958 ~vl~~~n~~RR~Lidqv~a~aL~e~~~Pee--Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka 1035 (1630)
T 1xi4_A 958 SVLLESNPYRRPLIDQVVQTALSETQDPEE--VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA 1035 (1630)
T ss_pred HHhcCCcHHHHHHHHHHHHhhcccccCHHH--hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh
Confidence 1111111 1233443 3556678888899999999999888442 224556777777777666
Q ss_pred CChHHHHHHhhhCCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCChhHHHHHHHHHH
Q 046775 246 GSMDEARMIFHLMPEKNLIAWNIVISGHLQNGGDMEAASLFPWMYREGVGFDQTTLSTVLKSVASFQAIGVCKQVHALSV 325 (771)
Q Consensus 246 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 325 (771)
+..+.....+....-+ ...+...+.+.|.+++|..+|++.. -.......++ ...+++++|.++...+
T Consensus 1036 -D~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aerv- 1102 (1630)
T 1xi4_A 1036 -DRTRVMEYINRLDNYD---APDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERC- 1102 (1630)
T ss_pred -ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhc-
Confidence 4455555555554322 4557788889999999999999852 1111122222 2667888888887754
Q ss_pred HhcCCCchHHHhHHHHHHHhcCCHHHHHHHHHhcCCCceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHH
Q 046775 326 KTAFESDDYIVNSLIDAYGKCGHVEDAVKIFKESSAVDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSL 405 (771)
Q Consensus 326 ~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 405 (771)
.++.+|..+..++.+.|++++|.+.|.+. .|...|..++..+.+.|++++|++.|...++.. +++...+.+
T Consensus 1103 -----n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~L 1173 (1630)
T 1xi4_A 1103 -----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETEL 1173 (1630)
T ss_pred -----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHH
Confidence 45788999999999999999999999775 677888899999999999999999999877654 444444458
Q ss_pred HHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHH
Q 046775 406 LNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPDRGIVSWSAMIGGLAQHGRGKEAL 485 (771)
Q Consensus 406 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 485 (771)
..+|++.++++....+. + .++...+..+.+.|...|++++|...|... ..|..+...|.+.|++++|+
T Consensus 1174 afaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AI 1241 (1630)
T 1xi4_A 1174 IFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAV 1241 (1630)
T ss_pred HHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHH
Confidence 88999998888644432 2 345566777999999999999999999986 48999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 046775 486 QMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTM-PF 564 (771)
Q Consensus 486 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~ 564 (771)
+.+++. -|..+|..+-.+|...|.+..|..+... +..+.+.+..++..|.+.|.++||+.+++.. ..
T Consensus 1242 EaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A 1242 DGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred HHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 999977 3568999999999999999999887543 3456677889999999999999999999876 45
Q ss_pred CCCH-hHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCC-----CCchhHHHHHHHHHhcCCchhHHH
Q 046775 565 QANA-SVWGALLGAARIY--KNVEVGQHAAEMLFAIEP-----EKSSTHVLLSNIYASAGMWDNVAK 623 (771)
Q Consensus 565 ~p~~-~~~~~ll~a~~~~--~~~~~a~~~~~~~~~l~p-----~~~~~~~~l~~~y~~~g~~~~a~~ 623 (771)
+|.. ..|.-|..++.+. +++.++.+.+..-..+.| ++...|.-+.-+|.+.|+|+.|..
T Consensus 1310 eraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1310 ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 5543 3665555555544 467777888887777777 788889999999999999999985
No 16
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=4e-18 Score=178.27 Aligned_cols=320 Identities=15% Similarity=0.115 Sum_probs=161.1
Q ss_pred cCCChHHHHHHhhhCCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCChhHHHHHHHH
Q 046775 244 KCGSMDEARMIFHLMPEKNLIAWNIVISGHLQNGGDMEAASLFPWMYREGVGFDQTTLSTVLKSVASFQAIGVCKQVHAL 323 (771)
Q Consensus 244 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~ 323 (771)
+.|++++|..+++++..|+ +|+.++.++.+.|++++|++.|.+ .+|..+|..++.++...|+++++...+..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6789999999999996664 999999999999999999999976 36888999999999999999999998888
Q ss_pred HHHhcCCCchHHHhHHHHHHHhcCCHHHHHHHHHhcCCCceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHH
Q 046775 324 SVKTAFESDDYIVNSLIDAYGKCGHVEDAVKIFKESSAVDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCS 403 (771)
Q Consensus 324 ~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 403 (771)
..+. .+++.+.+.|+.+|.++|+++++.++|+. |+..+|+.+...|...|.+++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 8774 45578899999999999999999988864 67789999999999999999999999987 4799
Q ss_pred HHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHH
Q 046775 404 SLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPDRGIVSWSAMIGGLAQHGRGKE 483 (771)
Q Consensus 404 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 483 (771)
.+..++.++|+++.|.+.+..+ .++.+|..++.++...|+++.|......+. .++.-...++..|.+.|++++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHH
Confidence 9999999999999999999887 378999999999999999999988887765 444445569999999999999
Q ss_pred HHHHHHHHHHCCCCCCH-H--HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC------CcchHHHHHHHHhhcCCHHH
Q 046775 484 ALQMFGQMLEDGVLPNH-I--TLVSVLCACNHAGLVAEAKHHFESMEKKFGIQP------MQEHYACMIDILGRAGKFQE 554 (771)
Q Consensus 484 A~~l~~~m~~~g~~pd~-~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p------~~~~y~~lv~~l~r~g~~~e 554 (771)
|+.+++..+.. .|-. . |..+++.+-.+-+++.+.++.|.+-. .++| +..+|.-++-+|..-|+++.
T Consensus 226 ai~lLe~aL~l--e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i---ni~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 226 LITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFWSRV---NIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp HHHHHHHHTTS--TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS---CHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCC--cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 99999998863 4443 3 44455555556777888888776433 6666 57889999999999999999
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 046775 555 AMELVDTMPFQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEP 599 (771)
Q Consensus 555 A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p 599 (771)
|...+-+-| |++.--..+.....+-.|.|.--++..--++-.|
T Consensus 301 A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p 343 (449)
T 1b89_A 301 AIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP 343 (449)
T ss_dssp HHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG
T ss_pred HHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH
Confidence 998776654 2222223334445556666666666555555544
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.78 E-value=1.2e-16 Score=167.04 Aligned_cols=286 Identities=12% Similarity=0.032 Sum_probs=232.3
Q ss_pred CCchHHHhHHHHHHHhcCCHHHHHHHHHhcC---CCceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHH
Q 046775 330 ESDDYIVNSLIDAYGKCGHVEDAVKIFKESS---AVDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLL 406 (771)
Q Consensus 330 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 406 (771)
+.+..+...+...+...|++++|.++|+++. +.+...+..++..+.+.|++++|+.+++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 5566677778888888899999999888764 3455667778888889999999999999888742 33556777777
Q ss_pred HHhhccc-chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChH
Q 046775 407 NACANLS-AYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIP---DRGIVSWSAMIGGLAQHGRGK 482 (771)
Q Consensus 407 ~a~~~~~-~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~ 482 (771)
..+...| +++.|...+..+.+.. +.+...+..+...|...|++++|...|++.. ..+..+|..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 8888888 8899999998888765 5567788899999999999999999998876 334677888999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCC-------CCCcchHHHHHHHHhhcCCHHHH
Q 046775 483 EALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGI-------QPMQEHYACMIDILGRAGKFQEA 555 (771)
Q Consensus 483 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i-------~p~~~~y~~lv~~l~r~g~~~eA 555 (771)
+|++.|++..+.. +.+..++..+...+...|++++|..+|++..+...- +.....|..+..++.+.|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999998842 334568888888999999999999999988765311 33356889999999999999999
Q ss_pred HHHHHhCC-CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH-HhcCCc
Q 046775 556 MELVDTMP-FQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIY-ASAGMW 618 (771)
Q Consensus 556 ~~~~~~m~-~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y-~~~g~~ 618 (771)
.+.+++.. ..| +..+|..+...+...|+.+.|...++++++++|+++..+..|+.+| ...|+.
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 99998863 344 4568888999999999999999999999999999999999999988 455553
No 18
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.77 E-value=7.1e-14 Score=162.15 Aligned_cols=490 Identities=13% Similarity=0.090 Sum_probs=339.5
Q ss_pred CCchhHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCChHHHHHHHhc------------CCCCCcch----------HHH
Q 046775 9 KDLFLGLQVHGIVVFTGFDSDEFVANSLVVMYAKCGNFIDSRRLFDA------------IPERSVVS----------WNS 66 (771)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~------------~~~~~~~~----------~n~ 66 (771)
+.+.......+.-+..| ..++.++|+|...|...++-.+. .+.+ ..++|+.. -.-
T Consensus 853 nrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~--fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~e 929 (1630)
T 1xi4_A 853 NRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPER--FLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLE 929 (1630)
T ss_pred HHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHH--HhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHH
Confidence 34444444555555666 35888999999999976653332 2211 12233321 223
Q ss_pred HHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhcCCCcHHHHHHHHHHHHhCC--CCChhhHHHHHHHHHhc
Q 046775 67 LFSCYVHCDFLEEAVCFFKEMVLSGIRPNEFSLSSMINACAGSGDSLLGRKIHGYSIKLGY--DSDMFSANALVDMYAKV 144 (771)
Q Consensus 67 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~--~~~~~~~~~Li~~y~~~ 144 (771)
||...-+++.+...-+.+-+ +-|...|..++.- +-+.-+++.++.....+ ..++.-....+..|+..
T Consensus 930 li~vt~~n~l~k~~arylv~------r~d~~lW~~vl~~-----~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~a 998 (1630)
T 1xi4_A 930 LINVCNENSLFKSLSRYLVR------RKDPELWGSVLLE-----SNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTA 998 (1630)
T ss_pred HHHHHhcchhHHHHHHHHHH------hcCHHHHHHHhcC-----CcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhC
Confidence 44444444444332222111 1244555555521 11223445555544443 23444456778888899
Q ss_pred CChhHHHHHHccCCC-CC-----cccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhcCCcHHHHHH
Q 046775 145 GNLEDAVAVFKDIEH-PD-----IVSWNAVIAGCVLHEHNDWALKLFQQMKSSEINPNMFTYTSALKACAGMELKELGRQ 218 (771)
Q Consensus 145 g~~~~A~~~f~~~~~-~~-----~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 218 (771)
|.+.+|.++++++.- ++ ...-|.++....+. +.....+...+... ....-+...|...|.+++|.+
T Consensus 999 glp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~Iai~lglyEEAf~ 1070 (1630)
T 1xi4_A 999 DLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIANIAISNELFEEAFA 1070 (1630)
T ss_pred CCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHHHHHhCCCHHHHHH
Confidence 999999999988763 22 24456677666666 44555555555431 113336667788999999999
Q ss_pred HHHHHHHccCCCChhHHHHHHHhhhcCCChHHHHHHhhhCCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH
Q 046775 219 LHCSLIKMEIKSDPIVGVGLVDMYAKCGSMDEARMIFHLMPEKNLIAWNIVISGHLQNGGDMEAASLFPWMYREGVGFDQ 298 (771)
Q Consensus 219 l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 298 (771)
+|+... ......+.+ +-..|++++|.++.++.. +..+|..+..++.+.|++++|++.|.+. -|.
T Consensus 1071 IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~ 1134 (1630)
T 1xi4_A 1071 IFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDP 1134 (1630)
T ss_pred HHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CCh
Confidence 998852 111222333 237788999999998774 4568999999999999999999999663 567
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcCCHHHHHHHHHhcCCCceecHHHHHHHHHHcC
Q 046775 299 TTLSTVLKSVASFQAIGVCKQVHALSVKTAFESDDYIVNSLIDAYGKCGHVEDAVKIFKESSAVDLVACTSMITAYAQFG 378 (771)
Q Consensus 299 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 378 (771)
..|..+..+|.+.|+++.+.+.+....+.. +++.+.+.++..|++.+++++..... ..++...|..+...|...|
T Consensus 1135 say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg 1209 (1630)
T 1xi4_A 1135 SSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEK 1209 (1630)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcC
Confidence 788889999999999999999998887765 44445556999999999998644443 3456667888888999999
Q ss_pred ChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 046775 379 LGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFS 458 (771)
Q Consensus 379 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~ 458 (771)
++++|..+|... ..|..+...+.++|+++.|.+....+ .+..+|..+..++...|++..|.....
T Consensus 1210 ~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl 1274 (1630)
T 1xi4_A 1210 MYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGL 1274 (1630)
T ss_pred CHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 999999999984 37889999999999999999888876 456788888888888999999988876
Q ss_pred hCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC-
Q 046775 459 EIPDRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHI---TLVSVLCACNHAGLVAEAKHHFESMEKKFGIQP- 534 (771)
Q Consensus 459 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~---t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p- 534 (771)
. ...+...+..++..|...|.+++|+.+++..+. +.|.+. |....+.+-.+-+++.++.++|.+-. .++|
T Consensus 1275 ~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaKy~peklmEhlk~f~~ri---ni~k~ 1348 (1630)
T 1xi4_A 1275 H-IVVHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREHLELFWSRV---NIPKV 1348 (1630)
T ss_pred h-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc---ccchH
Confidence 5 333455667899999999999999999988875 445543 44666666677788888888887543 5555
Q ss_pred -----CcchHHHHHHHHhhcCCHHHHHHHHHhC
Q 046775 535 -----MQEHYACMIDILGRAGKFQEAMELVDTM 562 (771)
Q Consensus 535 -----~~~~y~~lv~~l~r~g~~~eA~~~~~~m 562 (771)
+..+|.-++-+|.+.|+++.|...+-+-
T Consensus 1349 ~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h 1381 (1630)
T 1xi4_A 1349 LRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 1381 (1630)
T ss_pred hHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhc
Confidence 4678999999999999999998655443
No 19
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=5.5e-17 Score=169.73 Aligned_cols=223 Identities=13% Similarity=0.054 Sum_probs=89.1
Q ss_pred HcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhcCCCcHHHHHHHH
Q 046775 41 AKCGNFIDSRRLFDAIPERSVVSWNSLFSCYVHCDFLEEAVCFFKEMVLSGIRPNEFSLSSMINACAGSGDSLLGRKIHG 120 (771)
Q Consensus 41 ~~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~ 120 (771)
-+.|++++|...+++++.|+ +|..|..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|...+.
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 47899999999999997765 999999999999999999999975 3688899999999999999999999888
Q ss_pred HHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhH
Q 046775 121 YSIKLGYDSDMFSANALVDMYAKVGNLEDAVAVFKDIEHPDIVSWNAVIAGCVLHEHNDWALKLFQQMKSSEINPNMFTY 200 (771)
Q Consensus 121 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 200 (771)
...+. .+++.+.+.|+.+|.++|+++++.++|+. |+..+|+.+...|...|.+++|...|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 87775 46688899999999999999999988864 78889999999999999999999999977 378
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHHHHccCCCChhHHHHHHHhhhcCCChHHHHHHhhhCCCCCeehHHHHHHHHHhCCChh
Q 046775 201 TSALKACAGMELKELGRQLHCSLIKMEIKSDPIVGVGLVDMYAKCGSMDEARMIFHLMPEKNLIAWNIVISGHLQNGGDM 280 (771)
Q Consensus 201 ~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~ 280 (771)
..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|.++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence 88888888888888888888877 367888888888888888888877776654 33333446778888888888
Q ss_pred HHHHHHHHHHHC
Q 046775 281 EAASLFPWMYRE 292 (771)
Q Consensus 281 ~A~~~~~~m~~~ 292 (771)
+|+.+++.....
T Consensus 225 Eai~lLe~aL~l 236 (449)
T 1b89_A 225 ELITMLEAALGL 236 (449)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHHhCC
Confidence 888888876643
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.74 E-value=6.2e-16 Score=161.45 Aligned_cols=263 Identities=11% Similarity=0.020 Sum_probs=227.1
Q ss_pred CceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHH
Q 046775 362 VDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLV 441 (771)
Q Consensus 362 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li 441 (771)
.+...+..+...+...|++++|+++|+++.... +.+...+..+...+...|++++|...+..+.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 466678888899999999999999999998753 3345566677788899999999999999999876 56788899999
Q ss_pred HHHHhcC-CHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 046775 442 NMYAKCG-SIDDADRAFSEIP---DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVA 517 (771)
Q Consensus 442 ~~y~k~g-~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~ 517 (771)
..|...| ++++|...|++.. ..+...|..+...|...|++++|++.|+++.+.. +.+..++..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 9999999999865 3456789999999999999999999999999852 233567777888999999999
Q ss_pred HHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhCC-C----------CCCHhHHHHHHHHHHhcCCHH
Q 046775 518 EAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAMELVDTMP-F----------QANASVWGALLGAARIYKNVE 585 (771)
Q Consensus 518 ~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~----------~p~~~~~~~ll~a~~~~~~~~ 585 (771)
+|..+|++..+. .|+ ...+..+..++.+.|++++|.+.+++.. . ..+..+|..+...+...|+.+
T Consensus 177 ~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 177 LAERFFSQALSI---APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHTT---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHh---CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 999999998753 454 6788999999999999999999998762 1 233568999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHh
Q 046775 586 VGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKD 630 (771)
Q Consensus 586 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 630 (771)
.|...++++++++|+++..+..++.+|...|++++|.+.++...+
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999886543
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.73 E-value=3.4e-16 Score=166.44 Aligned_cols=277 Identities=10% Similarity=-0.042 Sum_probs=223.5
Q ss_pred HHhcCCHHHHHH-HHHhcCC-------CceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccc
Q 046775 343 YGKCGHVEDAVK-IFKESSA-------VDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSA 414 (771)
Q Consensus 343 y~k~g~~~~A~~-~f~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 414 (771)
|.-.|++++|.. .|++... .+...|..+...|.+.|++++|+..|+++.+.. +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 444578888888 8875432 145678899999999999999999999998753 3456778888889999999
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHH---------------HHHHHH
Q 046775 415 YEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPD---RGIVSWSA---------------MIGGLA 476 (771)
Q Consensus 415 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~---------------li~~~~ 476 (771)
++.|...+..+++.. +.+..++..+...|.+.|++++|...|+.+.. .+...+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 999999999998876 66788899999999999999999999997652 22223321 133344
Q ss_pred HcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCH
Q 046775 477 QHGRGKEALQMFGQMLEDGVLPN---HITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKF 552 (771)
Q Consensus 477 ~~g~~~~A~~l~~~m~~~g~~pd---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~ 552 (771)
..|++++|+..|+++.+. .|+ ..++..+...+...|++++|..+|+.+.+. .|+ ...|..++.++.+.|++
T Consensus 193 ~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~ 267 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQS 267 (368)
T ss_dssp HHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCH
T ss_pred hcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCH
Confidence 889999999999999984 455 678899999999999999999999998865 454 67899999999999999
Q ss_pred HHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------chhHHHHHHHHHhcCCch
Q 046775 553 QEAMELVDTM-PFQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEK-----------SSTHVLLSNIYASAGMWD 619 (771)
Q Consensus 553 ~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~-----------~~~~~~l~~~y~~~g~~~ 619 (771)
++|.+.++++ ...| +..+|..+...+...|+.+.|...+++++++.|++ +..|..|+.+|...|+++
T Consensus 268 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 347 (368)
T 1fch_A 268 EEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD 347 (368)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChH
Confidence 9999999987 3445 46689999999999999999999999999999988 789999999999999999
Q ss_pred hHHHHHH
Q 046775 620 NVAKVRR 626 (771)
Q Consensus 620 ~a~~~~~ 626 (771)
+|..+.+
T Consensus 348 ~A~~~~~ 354 (368)
T 1fch_A 348 AYGAADA 354 (368)
T ss_dssp GHHHHHT
T ss_pred hHHHhHH
Confidence 9998875
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.72 E-value=9.7e-15 Score=163.65 Aligned_cols=87 Identities=11% Similarity=0.075 Sum_probs=49.3
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC-ChhhHHHHHHHhhcCCcHHHHHHHHHHHHHccCCCChhHHHHHH
Q 046775 161 DIVSWNAVIAGCVLHEHNDWALKLFQQMKSSEINP-NMFTYTSALKACAGMELKELGRQLHCSLIKMEIKSDPIVGVGLV 239 (771)
Q Consensus 161 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li 239 (771)
|...|..++. +.+.|++++|..+|+++... .| +...|...+..+.+.|+.+.|+.+++.+++.. |++..|..++
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 4556777776 46677777777777777654 23 33445555555556666666666666665543 3444454444
Q ss_pred H-hhhcCCChHHHH
Q 046775 240 D-MYAKCGSMDEAR 252 (771)
Q Consensus 240 ~-~y~~~g~~~~A~ 252 (771)
. .....|+.+.|+
T Consensus 87 ~~~~~~~~~~~~a~ 100 (530)
T 2ooe_A 87 SYVRETKGKLPSYK 100 (530)
T ss_dssp HHHHHHTTTSTTHH
T ss_pred HHHHHHccchhhHH
Confidence 3 222345554444
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.72 E-value=3.6e-14 Score=159.00 Aligned_cols=410 Identities=8% Similarity=0.015 Sum_probs=244.4
Q ss_pred ChhhHHHHHHHhhcCCcHHHHHHHHHHHHHccCCCChhHHHHHHHhhhcCCChHHHHHHhhhCCC--CCeehHHHHHH-H
Q 046775 196 NMFTYTSALKACAGMELKELGRQLHCSLIKMEIKSDPIVGVGLVDMYAKCGSMDEARMIFHLMPE--KNLIAWNIVIS-G 272 (771)
Q Consensus 196 ~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~-~ 272 (771)
|...|..++.. ...|+++.|+.+++.+++.- +.+...|..++..+.+.|+.+.|+.+|++... |++..|...+. .
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 34455555553 45666777777777666542 33555666666666666677777766666554 44445555543 2
Q ss_pred HHhCCChhHHHH----HHHHHHH-CCCCCC-HhhHHHHHHHHhc---------cCChhHHHHHHHHHHHhcCCCchHHHh
Q 046775 273 HLQNGGDMEAAS----LFPWMYR-EGVGFD-QTTLSTVLKSVAS---------FQAIGVCKQVHALSVKTAFESDDYIVN 337 (771)
Q Consensus 273 ~~~~g~~~~A~~----~~~~m~~-~g~~pd-~~t~~~ll~a~~~---------~~~~~~a~~i~~~~~~~g~~~~~~~~~ 337 (771)
....|+.++|.+ +|++... .|..|+ ...|...+..... .|+++.++.++..+++........++.
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~ 169 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR 169 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 223455555544 4444332 233332 2223333322221 344444444444444411111111121
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCceecHHHHHHHHHHcCChHHHHHHHHHH------hcCC---CCCCH--------h
Q 046775 338 SLIDAYGKCGHVEDAVKIFKESSAVDLVACTSMITAYAQFGLGEEALKLYLEM------QDRE---INPDS--------F 400 (771)
Q Consensus 338 ~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m------~~~g---~~p~~--------~ 400 (771)
.........|. ..+..++. .+.+++.+|..++.++ .+.. +.|+. .
T Consensus 170 ~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 231 (530)
T 2ooe_A 170 DYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD 231 (530)
T ss_dssp HHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHH
T ss_pred HHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHH
Confidence 11111000000 00000000 0234456666666652 2211 23331 2
Q ss_pred hHHHHHHHhhc----ccch----HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------cCCHH-------HHHHHHh
Q 046775 401 VCSSLLNACAN----LSAY----EQGKQVHVHIIKFGFMSDTFAGNSLVNMYAK-------CGSID-------DADRAFS 458 (771)
Q Consensus 401 t~~~ll~a~~~----~~~~----~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k-------~g~~~-------~A~~~f~ 458 (771)
.|...+.-... .++. +.+..+++.+++.. +.++.+|..++..+.+ .|+++ +|..+|+
T Consensus 232 ~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~ 310 (530)
T 2ooe_A 232 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYE 310 (530)
T ss_dssp HHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHH
Confidence 23333322111 1122 35666788777764 5678888888888876 68876 8999998
Q ss_pred hCCC---C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCC
Q 046775 459 EIPD---R-GIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNH--ITLVSVLCACNHAGLVAEAKHHFESMEKKFGI 532 (771)
Q Consensus 459 ~~~~---~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i 532 (771)
+... | +...|..++..+.+.|+.++|..+|+++++ +.|+. ..|...+..+.+.|++++|+++|++..+.
T Consensus 311 ~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--- 385 (530)
T 2ooe_A 311 RAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--- 385 (530)
T ss_dssp HHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---
Confidence 7653 3 467899999999999999999999999998 56753 36788888888889999999999988743
Q ss_pred CCC-cchHHHHHHH-HhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch----h
Q 046775 533 QPM-QEHYACMIDI-LGRAGKFQEAMELVDTM-PFQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSS----T 604 (771)
Q Consensus 533 ~p~-~~~y~~lv~~-l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~----~ 604 (771)
.|. ...|...+.+ +...|+.++|..++++. ...| +..+|..++......|+.+.|..+++++++..|.++. .
T Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~l 465 (530)
T 2ooe_A 386 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 465 (530)
T ss_dssp TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHH
T ss_pred cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHH
Confidence 444 2233332222 33689999999999876 2345 4668999988888899999999999999998776655 5
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHhC
Q 046775 605 HVLLSNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 605 ~~~l~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
|..........|+.+.+.++.+.+.+.
T Consensus 466 w~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 466 WARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 666677778889999999888877654
No 24
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.70 E-value=4.1e-14 Score=156.86 Aligned_cols=351 Identities=11% Similarity=-0.003 Sum_probs=248.0
Q ss_pred CCChHHHHHHhhhCCC-CCeehHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc----cCChh
Q 046775 245 CGSMDEARMIFHLMPE-KNLIAWNIVISGHLQ----NGGDMEAASLFPWMYREGVGFDQTTLSTVLKSVAS----FQAIG 315 (771)
Q Consensus 245 ~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~----~~~~~ 315 (771)
.++.++|...|+...+ .+..++..+...|.. .++.++|+..|++..+.| +...+..+-..+.. .++.+
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 4555555555544322 233444455555555 555555555555555543 23333333333333 45566
Q ss_pred HHHHHHHHHHHhcCCCchHHHhHHHHHHHh----cCCHHHHHHHHHhcCC-CceecHHHHHHHHHH----cCChHHHHHH
Q 046775 316 VCKQVHALSVKTAFESDDYIVNSLIDAYGK----CGHVEDAVKIFKESSA-VDLVACTSMITAYAQ----FGLGEEALKL 386 (771)
Q Consensus 316 ~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l 386 (771)
.|...+....+.| +...+..|..+|.. .++.++|.+.|++..+ .+..++..+...|.+ .++.++|++.
T Consensus 133 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 209 (490)
T 2xm6_A 133 ESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQW 209 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence 6666666655544 34556666677766 6788888888876443 456677777777777 7888888888
Q ss_pred HHHHhcCCCCCCHhhHHHHHHHhhc----ccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHh
Q 046775 387 YLEMQDREINPDSFVCSSLLNACAN----LSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAK----CGSIDDADRAFS 458 (771)
Q Consensus 387 ~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~~~f~ 458 (771)
|++..+.| +...+..+...+.. .++.++|...+....+.+ ++..+..|..+|.. .++.++|...|+
T Consensus 210 ~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~ 283 (490)
T 2xm6_A 210 YRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYR 283 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Confidence 88887654 44555555555554 678888888888887764 45667778888888 899999999998
Q ss_pred hCCC-CChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHHh
Q 046775 459 EIPD-RGIVSWSAMIGGLAQH-----GRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAG---LVAEAKHHFESMEKK 529 (771)
Q Consensus 459 ~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~ 529 (771)
...+ .+..++..+...|... ++.++|+..|++..+.| +...+..+...+...| +.++|.++|++..+.
T Consensus 284 ~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~ 360 (490)
T 2xm6_A 284 KSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK 360 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC
Confidence 8764 3567788888888887 89999999999999865 4456666666676656 789999999998764
Q ss_pred hCCCCCcchHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC-
Q 046775 530 FGIQPMQEHYACMIDILGR----AGKFQEAMELVDTMPFQANASVWGALLGAARI----YKNVEVGQHAAEMLFAIEPE- 600 (771)
Q Consensus 530 ~~i~p~~~~y~~lv~~l~r----~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~----~~~~~~a~~~~~~~~~l~p~- 600 (771)
.+...+..+..+|.. .+++++|.+++++..-..+...|..|...+.. .+|.+.|...++++.+.+|+
T Consensus 361 ----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~ 436 (490)
T 2xm6_A 361 ----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNL 436 (490)
T ss_dssp ----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCH
T ss_pred ----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCC
Confidence 356778888888888 89999999999987534467788888888877 89999999999999999954
Q ss_pred --CchhHHHHHHHHHh
Q 046775 601 --KSSTHVLLSNIYAS 614 (771)
Q Consensus 601 --~~~~~~~l~~~y~~ 614 (771)
++.+...|+.++..
T Consensus 437 ~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 437 FGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHTTSCHH
T ss_pred cCCHHHHHHHHhcCHh
Confidence 77777778777665
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.69 E-value=2.5e-14 Score=146.37 Aligned_cols=246 Identities=11% Similarity=-0.007 Sum_probs=162.4
Q ss_pred HHhcCCHHHHHHHHHhcCCCce----ecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHH
Q 046775 343 YGKCGHVEDAVKIFKESSAVDL----VACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQG 418 (771)
Q Consensus 343 y~k~g~~~~A~~~f~~~~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 418 (771)
....|+++.|...++.....++ .....+..+|...|++++|+..++. .-.|+..++..+...+...++.+.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 4456888888888877655332 2345567788888888888876644 1355666777777778888888888
Q ss_pred HHHHHHHHHhCC-CCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 046775 419 KQVHVHIIKFGF-MSDTFAGNSLVNMYAKCGSIDDADRAFSEIPDRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVL 497 (771)
Q Consensus 419 ~~i~~~~~~~g~-~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 497 (771)
.+.++.++..+. +.++..+..+...|.+.|++++|.+.|++ ..+...|..++..|.+.|+.++|++.|+++.+. .
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 888888877663 44566777777888888888888888887 456777888888888888888888888888874 4
Q ss_pred CCHHHH---HHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHH
Q 046775 498 PNHITL---VSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMPFQANASVWGAL 574 (771)
Q Consensus 498 pd~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~l 574 (771)
|+.... .+.+..+...|++++|..+|+++.+.+ +++..+|..+
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~----------------------------------p~~~~~~~~l 206 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC----------------------------------SPTLLLLNGQ 206 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS----------------------------------CCCHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC----------------------------------CCcHHHHHHH
Confidence 664311 112222334466667776666666541 1233455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchh-HHHHHHHHHh
Q 046775 575 LGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDN-VAKVRRFMKD 630 (771)
Q Consensus 575 l~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~-a~~~~~~m~~ 630 (771)
..++...|+.+.|+..++++++++|+++.++..++.++...|++++ +.++++.+.+
T Consensus 207 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 207 AACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 5555555555666666666666666666666666666666666654 3455554443
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.69 E-value=6.1e-15 Score=162.69 Aligned_cols=366 Identities=11% Similarity=-0.038 Sum_probs=209.4
Q ss_pred hhHHHHHHHhhhcCCChHHHHHHhhhCC------------CCCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHh
Q 046775 232 PIVGVGLVDMYAKCGSMDEARMIFHLMP------------EKNLIAWNIVISGHLQNGGDMEAASLFPWMYREGVGFDQT 299 (771)
Q Consensus 232 ~~~~~~Li~~y~~~g~~~~A~~~f~~m~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 299 (771)
...||.|...|...|+.++|.+.|++.. ....++|+.+...|...|++++|...|++.....
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~------ 124 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC------ 124 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh------
Confidence 4456666666666666666666655431 1234566777777777777777777766654310
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHHhcCCCchHHHhHHHHHHHhc--CCHHHHHHHHHhcC---CCceecHHHHHHH-
Q 046775 300 TLSTVLKSVASFQAIGVCKQVHALSVKTAFESDDYIVNSLIDAYGKC--GHVEDAVKIFKESS---AVDLVACTSMITA- 373 (771)
Q Consensus 300 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~--g~~~~A~~~f~~~~---~~~~~~~~~li~~- 373 (771)
.............++..+..++.+. +++++|.+.|++.. +.+...+..+...
T Consensus 125 ----------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~ 182 (472)
T 4g1t_A 125 ----------------------EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIAS 182 (472)
T ss_dssp ----------------------HHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred ----------------------HhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 0000000011122333333333333 34667777776543 2334444444333
Q ss_pred --HHHcCChHHHHHHHHHHhcCCCCCC-HhhHHHHHHHhh----cccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 046775 374 --YAQFGLGEEALKLYLEMQDREINPD-SFVCSSLLNACA----NLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAK 446 (771)
Q Consensus 374 --~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~----~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k 446 (771)
+...++.++|++.|++..+. .|+ ..++..+...+. ..++.+.|.+.+..+.+.. +.+..++..+...|.+
T Consensus 183 ~~l~~~~~~~~al~~~~~al~l--~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~ 259 (472)
T 4g1t_A 183 YRLDNWPPSQNAIDPLRQAIRL--NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRR 259 (472)
T ss_dssp HHHHHSCCCCCTHHHHHHHHHH--CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHH
T ss_pred HHhcCchHHHHHHHHHHHHhhc--CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHH
Confidence 33456667777777776653 333 333433333333 3356677777777777665 5566677778888888
Q ss_pred cCCHHHHHHHHhhCC---CCChhHHHHHHHHHHH-------------------cCChHHHHHHHHHHHHCCCCCCH-HHH
Q 046775 447 CGSIDDADRAFSEIP---DRGIVSWSAMIGGLAQ-------------------HGRGKEALQMFGQMLEDGVLPNH-ITL 503 (771)
Q Consensus 447 ~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~-------------------~g~~~~A~~l~~~m~~~g~~pd~-~t~ 503 (771)
.|++++|...|++.. +.+..+|..+...|.. .+..++|+..|++..+ ..|+. .++
T Consensus 260 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~ 337 (472)
T 4g1t_A 260 KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE--ANDNLFRVC 337 (472)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH--HCTTTCCCH
T ss_pred cCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh--cCCchhhhh
Confidence 888888888887665 2334556655555432 2345778888888877 34544 467
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcc----hHHHHHH-HHhhcCCHHHHHHHHHhC-CCCCCHhHHHHHHHH
Q 046775 504 VSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQE----HYACMID-ILGRAGKFQEAMELVDTM-PFQANASVWGALLGA 577 (771)
Q Consensus 504 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~----~y~~lv~-~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~a 577 (771)
..+...+...|++++|..+|++..+. .|+.. .+..+.. .+...|++++|++.+++. .+.|+...+...
T Consensus 338 ~~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~--- 411 (472)
T 4g1t_A 338 SILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM--- 411 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---
T ss_pred hhHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---
Confidence 78888899999999999999988753 44422 1223333 345788999999988876 467776544333
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCCccceE
Q 046775 578 ARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDNKLKKEPGMSWI 642 (771)
Q Consensus 578 ~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i 642 (771)
.+.++.++++.++.+|+++.+|..|+.+|...|++++|.+.+++..+.|-.-....||+
T Consensus 412 ------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 412 ------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp ------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred ------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 34456778889999999999999999999999999999999998888775443445554
No 27
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.68 E-value=1.4e-15 Score=161.69 Aligned_cols=303 Identities=13% Similarity=0.032 Sum_probs=218.1
Q ss_pred CHHHHHHHHHhcCCCceecHHHHHHHHHHcCChHHHHH-HHHHHhcCCC-CC--CHhhHHHHHHHhhcccchHHHHHHHH
Q 046775 348 HVEDAVKIFKESSAVDLVACTSMITAYAQFGLGEEALK-LYLEMQDREI-NP--DSFVCSSLLNACANLSAYEQGKQVHV 423 (771)
Q Consensus 348 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~-l~~~m~~~g~-~p--~~~t~~~ll~a~~~~~~~~~a~~i~~ 423 (771)
.++.+...|+.+...+.. ++...|++++|++ .|.+...... .| +...+..+...+...|++++|...+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 88 (368)
T 1fch_A 16 FWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFE 88 (368)
T ss_dssp -------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344444455554443322 3445688999998 8887664321 11 34567788889999999999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 046775 424 HIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIP---DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNH 500 (771)
Q Consensus 424 ~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 500 (771)
.+++.. +.+..++..+...|.+.|++++|...|+++. ..+..+|..+...|...|++++|++.|+++... .|+.
T Consensus 89 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~ 165 (368)
T 1fch_A 89 AAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY--TPAY 165 (368)
T ss_dssp HHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTT
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCc
Confidence 999876 6678899999999999999999999999775 456789999999999999999999999999984 4544
Q ss_pred HHHHH----------------HHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCC-
Q 046775 501 ITLVS----------------VLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMP- 563 (771)
Q Consensus 501 ~t~~~----------------ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~- 563 (771)
..... .+..+...|++++|..+|+++.+...-.++...+..++.++.+.|++++|.+.++++.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 245 (368)
T 1fch_A 166 AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS 245 (368)
T ss_dssp GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 32211 2334448999999999999998763222247889999999999999999999998873
Q ss_pred CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCCccceE
Q 046775 564 FQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDNKLKKEPGMSWI 642 (771)
Q Consensus 564 ~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i 642 (771)
..| +..+|..+...+...|+.+.|...++++++++|+++.+|..++.+|...|++++|.+.++.+.+..... .+
T Consensus 246 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~---- 320 (368)
T 1fch_A 246 VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS-RG---- 320 (368)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-------
T ss_pred hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-CC----
Confidence 445 466899999999999999999999999999999999999999999999999999999998886643211 00
Q ss_pred EEcCEEEEEEeCCCCccchHHHHHHHHHHHHHH
Q 046775 643 EVKDKVYTFTVGDRSHARSKEIYAKLDEVSDLL 675 (771)
Q Consensus 643 ~~~~~~~~f~~~~~~h~~~~~i~~~l~~l~~~~ 675 (771)
.....+|....++..+..+...+
T Consensus 321 ----------~~~~~~~~~~~~~~~l~~~~~~~ 343 (368)
T 1fch_A 321 ----------PRGEGGAMSENIWSTLRLALSML 343 (368)
T ss_dssp --------------CCCCCHHHHHHHHHHHHHH
T ss_pred ----------ccccccchhhHHHHHHHHHHHHh
Confidence 01123566677777766665554
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.68 E-value=1.1e-15 Score=162.55 Aligned_cols=230 Identities=10% Similarity=-0.017 Sum_probs=185.4
Q ss_pred hhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHH
Q 046775 400 FVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIP---DRGIVSWSAMIGGLA 476 (771)
Q Consensus 400 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~ 476 (771)
..+......+.+.|++++|..++..+++.. +.+..++..+...|.+.|++++|...|+++. ..+..+|..+...|.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT 144 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 346666666667777777777777776655 5567788889999999999999999998775 345788999999999
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHH
Q 046775 477 QHGRGKEALQMFGQMLEDGVLPNHI-----------TLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDI 545 (771)
Q Consensus 477 ~~g~~~~A~~l~~~m~~~g~~pd~~-----------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~ 545 (771)
..|++++|+..|+++.+ ..|+.. .+..+...+...|++++|..+|+++.+...-.++...|..+..+
T Consensus 145 ~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIK--QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HTTCHHHHHHHHHHHHH--HCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHH--hCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 99999999999999988 445543 22344778899999999999999998763322357889999999
Q ss_pred HhhcCCHHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHH
Q 046775 546 LGRAGKFQEAMELVDTMP-FQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAK 623 (771)
Q Consensus 546 l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 623 (771)
|.+.|++++|.+.++++. ..| +..+|..+..++...|+.+.|...++++++++|+++.+|..++.+|...|++++|.+
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 302 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVS 302 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999873 445 567999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCC
Q 046775 624 VRRFMKDNK 632 (771)
Q Consensus 624 ~~~~m~~~g 632 (771)
.++.+.+..
T Consensus 303 ~~~~al~~~ 311 (365)
T 4eqf_A 303 NFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 999887643
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.68 E-value=1.9e-15 Score=160.73 Aligned_cols=258 Identities=9% Similarity=-0.083 Sum_probs=199.6
Q ss_pred ceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 046775 363 DLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVN 442 (771)
Q Consensus 363 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 442 (771)
+...|..+...+.+.|++++|+..|+++.... +.+..++..+...+...|++++|...+..+++.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45557777777777788888888887777642 3355667777777777888888888888777765 556777888888
Q ss_pred HHHhcCCHHHHHHHHhhCCCCC---h----------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHH
Q 046775 443 MYAKCGSIDDADRAFSEIPDRG---I----------VSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLP---NHITLVSV 506 (771)
Q Consensus 443 ~y~k~g~~~~A~~~f~~~~~~~---~----------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---d~~t~~~l 506 (771)
.|.+.|++++|...|+++...+ . ..++.+...|...|++++|++.|+++.+. .| +..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--NGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH--SCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--CcCccCHHHHHHH
Confidence 8888888888888888765221 1 22344578889999999999999999984 45 46788889
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC-HhHHHHHHHHHHhcCCH
Q 046775 507 LCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMP-FQAN-ASVWGALLGAARIYKNV 584 (771)
Q Consensus 507 l~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p~-~~~~~~ll~a~~~~~~~ 584 (771)
...+...|++++|..+|+++.+.. +.+...|..+..+|.+.|++++|.+.++++- ..|+ ..+|..+..++...|+.
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 999999999999999999988652 2347789999999999999999999998873 4554 66899999999999999
Q ss_pred HHHHHHHHHHHhcCCC------------CchhHHHHHHHHHhcCCchhHHHHHH
Q 046775 585 EVGQHAAEMLFAIEPE------------KSSTHVLLSNIYASAGMWDNVAKVRR 626 (771)
Q Consensus 585 ~~a~~~~~~~~~l~p~------------~~~~~~~l~~~y~~~g~~~~a~~~~~ 626 (771)
+.|...+++++++.|+ +...|..|+.+|...|+.+.+.++.+
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999887 36778999999999999999887654
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.66 E-value=6.3e-15 Score=153.54 Aligned_cols=259 Identities=10% Similarity=-0.075 Sum_probs=194.9
Q ss_pred ceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 046775 363 DLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVN 442 (771)
Q Consensus 363 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 442 (771)
+...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|+++.|...+..+.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 34455556666666667777777766666532 2244555566666666777777777777666654 445667777777
Q ss_pred HHHhcCCHHHHHHHHhhCCC---CChhHHHHH--------------HH-HHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 046775 443 MYAKCGSIDDADRAFSEIPD---RGIVSWSAM--------------IG-GLAQHGRGKEALQMFGQMLEDGVLPNHITLV 504 (771)
Q Consensus 443 ~y~k~g~~~~A~~~f~~~~~---~~~~~~~~l--------------i~-~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 504 (771)
.|.+.|++++|.+.|+.+.. .+...+..+ .. .+...|++++|++.++++.+.. +.+..++.
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA 176 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 77788888888777776542 222333333 22 3777889999999999998853 33567888
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhhCCCC-CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhc
Q 046775 505 SVLCACNHAGLVAEAKHHFESMEKKFGIQP-MQEHYACMIDILGRAGKFQEAMELVDTM-PFQA-NASVWGALLGAARIY 581 (771)
Q Consensus 505 ~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~ 581 (771)
.+...+...|++++|..+|+.+.+. .| +...+..+..++.+.|++++|.+.++++ ...| +..+|..+...+...
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 8899999999999999999998865 34 4678899999999999999999999886 3445 466899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCC------------CchhHHHHHHHHHhcCCchhHHHHHHH
Q 046775 582 KNVEVGQHAAEMLFAIEPE------------KSSTHVLLSNIYASAGMWDNVAKVRRF 627 (771)
Q Consensus 582 ~~~~~a~~~~~~~~~l~p~------------~~~~~~~l~~~y~~~g~~~~a~~~~~~ 627 (771)
|+.+.|...+++++++.|+ ++..|..++.+|...|++++|..+.+.
T Consensus 254 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 9999999999999999998 788999999999999999999988753
No 31
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.65 E-value=1.1e-16 Score=179.91 Aligned_cols=133 Identities=13% Similarity=0.132 Sum_probs=114.6
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 046775 429 GFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIP-------DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHI 501 (771)
Q Consensus 429 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 501 (771)
....-..+||+||++|+|+|++++|.++|++|. .||++|||+||.||++.|+.++|+++|++|.+.|+.||.+
T Consensus 122 ~~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvv 201 (1134)
T 3spa_A 122 QLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL 201 (1134)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHH
Confidence 345556789999999999999999999997653 6899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCc-HHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC
Q 046775 502 TLVSVLCACNHAGL-VAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTM 562 (771)
Q Consensus 502 t~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m 562 (771)
||+++|.++++.|. .++|.++|++|.+. |+.||..+|+|++....|.+-++...++...+
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 99999999999987 57899999999887 99999999999998888876666555553333
No 32
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.64 E-value=7.9e-13 Score=146.47 Aligned_cols=351 Identities=15% Similarity=0.013 Sum_probs=289.3
Q ss_pred CCeehHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc----cCChhHHHHHHHHHHHhcCCCc
Q 046775 261 KNLIAWNIVISGHLQ----NGGDMEAASLFPWMYREGVGFDQTTLSTVLKSVAS----FQAIGVCKQVHALSVKTAFESD 332 (771)
Q Consensus 261 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~ 332 (771)
.+..++..+...|.. .+++++|+..|++..+.| +...+..+-..+.. .++.+.|.+.+....+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 345566666666776 799999999999998875 45566666666666 889999999999998875 5
Q ss_pred hHHHhHHHHHHHh----cCCHHHHHHHHHhcCC-CceecHHHHHHHHHH----cCChHHHHHHHHHHhcCCCCCCHhhHH
Q 046775 333 DYIVNSLIDAYGK----CGHVEDAVKIFKESSA-VDLVACTSMITAYAQ----FGLGEEALKLYLEMQDREINPDSFVCS 403 (771)
Q Consensus 333 ~~~~~~Li~~y~k----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~ 403 (771)
...+..|..+|.. .+++++|.+.|++..+ .+..++..+...|.. .++.++|++.|++..+.| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 6677788889988 8899999999988654 466778888888887 789999999999998764 566677
Q ss_pred HHHHHhhc----ccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CChhHHHHHHHH
Q 046775 404 SLLNACAN----LSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAK----CGSIDDADRAFSEIPD-RGIVSWSAMIGG 474 (771)
Q Consensus 404 ~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~~~~-~~~~~~~~li~~ 474 (771)
.+-..+.. .++.++|...+....+.+ ++.....|..+|.. .++.++|...|+...+ .+..++..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777776 789999999999998875 56778889999987 8999999999998764 456778888888
Q ss_pred HHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----CcHHHHHHHHHHHHHhhCCCCCcchHHHHHHH
Q 046775 475 LAQ----HGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHA-----GLVAEAKHHFESMEKKFGIQPMQEHYACMIDI 545 (771)
Q Consensus 475 ~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~ 545 (771)
|.. .++.++|++.|++..+.| +...+..+...+... ++.++|..+|++..+. + +...+..+..+
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~ 337 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAI 337 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHH
Confidence 887 899999999999998865 455666677777776 8999999999998764 2 44667788888
Q ss_pred HhhcC---CHHHHHHHHHhCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh----
Q 046775 546 LGRAG---KFQEAMELVDTMPFQANASVWGALLGAARI----YKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYAS---- 614 (771)
Q Consensus 546 l~r~g---~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~----~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~---- 614 (771)
|.+.| ++++|.+++++..-..++..|..|...+.. .+|.+.|...++++.+.. ++.++..|+.+|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred HHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCC
Confidence 88767 789999999987544677788888888888 899999999999998864 68899999999998
Q ss_pred cCCchhHHHHHHHHHhCC
Q 046775 615 AGMWDNVAKVRRFMKDNK 632 (771)
Q Consensus 615 ~g~~~~a~~~~~~m~~~g 632 (771)
.++.++|.+.++...+.|
T Consensus 416 ~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTND 433 (490)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC
Confidence 899999999999988876
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.63 E-value=1.6e-16 Score=178.71 Aligned_cols=147 Identities=8% Similarity=0.018 Sum_probs=128.2
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHhcCC-------CCCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHH
Q 046775 30 EFVANSLVVMYAKCGNFIDSRRLFDAIP-------ERSVVSWNSLFSCYVHCDFLEEAVCFFKEMVLSGIRPNEFSLSSM 102 (771)
Q Consensus 30 ~~~~~~ll~~y~~~g~~~~A~~~f~~~~-------~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 102 (771)
..+||+||++|+++|++++|..+|++|. .||+++||+||.+|++.|+.++|+++|++|.+.|+.||.+||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4589999999999999999999997753 589999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCc-HHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHccCCC-----CCcccHHHHHHHHHhCC
Q 046775 103 INACAGSGDS-LLGRKIHGYSIKLGYDSDMFSANALVDMYAKVGNLEDAVAVFKDIEH-----PDIVSWNAVIAGCVLHE 176 (771)
Q Consensus 103 l~~~~~~~~~-~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-----~~~~~~n~li~~~~~~g 176 (771)
|.++++.|.. +.|.+++++|.+.|+.||..+|+++++.+.+.+-++.+.+++..+.. +.+.+.+.|...|.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 9999999985 78999999999999999999999999998888777777777655542 12345555666676655
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.62 E-value=1.1e-13 Score=143.91 Aligned_cols=258 Identities=12% Similarity=0.022 Sum_probs=174.5
Q ss_pred CeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCChhHHHHHHHHHHHhcCCCchHHHhHHHH
Q 046775 262 NLIAWNIVISGHLQNGGDMEAASLFPWMYREGVGFDQTTLSTVLKSVASFQAIGVCKQVHALSVKTAFESDDYIVNSLID 341 (771)
Q Consensus 262 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 341 (771)
+...|..+...+...|++++|+.+|+++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------------------------------~~~~~~~~~l~~ 63 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA------------------------------------PEREEAWRSLGL 63 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------------------TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC------------------------------------CCCHHHHHHHHH
Confidence 44566777788888888888888888876642 223444555666
Q ss_pred HHHhcCCHHHHHHHHHhcC---CCceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHH------------
Q 046775 342 AYGKCGHVEDAVKIFKESS---AVDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLL------------ 406 (771)
Q Consensus 342 ~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll------------ 406 (771)
.|.+.|++++|.+.|++.. +.+..+|..+...|...|++++|++.|+++... .|+.......+
T Consensus 64 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 141 (327)
T 3cv0_A 64 TQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNV 141 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTTTC----------------
T ss_pred HHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHH
Confidence 6667777777777776543 335566777777788888888888888877754 33332222221
Q ss_pred --HH--hhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcC
Q 046775 407 --NA--CANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIP---DRGIVSWSAMIGGLAQHG 479 (771)
Q Consensus 407 --~a--~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g 479 (771)
.. +...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+.+. ..+..+|..+...|...|
T Consensus 142 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 220 (327)
T 3cv0_A 142 QSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGN 220 (327)
T ss_dssp ----CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 22 667788888888888887765 4467777788888888888888888887654 334667777888888888
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-------------cchHHHHHHHH
Q 046775 480 RGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-------------QEHYACMIDIL 546 (771)
Q Consensus 480 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-------------~~~y~~lv~~l 546 (771)
++++|+..|+++.+.. +.+..++..+...+...|++++|.++|+++.+. .|+ ...|..+..++
T Consensus 221 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~ 296 (327)
T 3cv0_A 221 RPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM---QVGGTTPTGEASREATRSMWDFFRMLL 296 (327)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HTTSCC-----CCTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCccccccccchhhcCHHHHHHHHHHH
Confidence 8888888888877732 234556777777777788888888887777654 233 44566666666
Q ss_pred hhcCCHHHHHHHHHhC
Q 046775 547 GRAGKFQEAMELVDTM 562 (771)
Q Consensus 547 ~r~g~~~eA~~~~~~m 562 (771)
.+.|++++|.+++++.
T Consensus 297 ~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 297 NVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHTTCHHHHHHHTTCC
T ss_pred HhcCCHHHHHHHHHHH
Confidence 6666666666666543
No 35
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.61 E-value=1e-13 Score=141.74 Aligned_cols=225 Identities=10% Similarity=0.033 Sum_probs=157.7
Q ss_pred HHHhhhcCCChHHHHHHhhhCCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCChhHH
Q 046775 238 LVDMYAKCGSMDEARMIFHLMPEKNLIAWNIVISGHLQNGGDMEAASLFPWMYREGVGFDQTTLSTVLKSVASFQAIGVC 317 (771)
Q Consensus 238 Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 317 (771)
+..+|...|+.+.|...++....++..++..+...+...++.++|++.++++...+..|+
T Consensus 40 l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~-------------------- 99 (291)
T 3mkr_A 40 LYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVT-------------------- 99 (291)
T ss_dssp HHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCS--------------------
T ss_pred HHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCC--------------------
Confidence 345555566666666555554334444555555555555666666666666555443333
Q ss_pred HHHHHHHHHhcCCCchHHHhHHHHHHHhcCCHHHHHHHHHhcCCCceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC
Q 046775 318 KQVHALSVKTAFESDDYIVNSLIDAYGKCGHVEDAVKIFKESSAVDLVACTSMITAYAQFGLGEEALKLYLEMQDREINP 397 (771)
Q Consensus 318 ~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 397 (771)
+..++..+...|.+.|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+. .|
T Consensus 100 --------------~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p 161 (291)
T 3mkr_A 100 --------------NTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DE 161 (291)
T ss_dssp --------------CHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred --------------CHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--Cc
Confidence 344456677888999999999999998 567778899999999999999999999999875 36
Q ss_pred CHhhH---HHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHH
Q 046775 398 DSFVC---SSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIP---DRGIVSWSAM 471 (771)
Q Consensus 398 ~~~t~---~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~l 471 (771)
+.... ...+..+...|++++|..++..+.+.. +.++.+++.+..+|.+.|++++|...|++.. ..+..+|..+
T Consensus 162 ~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l 240 (291)
T 3mkr_A 162 DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINL 240 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 54311 122233344578888888888888774 6678888888888888888888888888765 3456778888
Q ss_pred HHHHHHcCChHH-HHHHHHHHHHCCCCCCHHHH
Q 046775 472 IGGLAQHGRGKE-ALQMFGQMLEDGVLPNHITL 503 (771)
Q Consensus 472 i~~~~~~g~~~~-A~~l~~~m~~~g~~pd~~t~ 503 (771)
+..+...|+..+ +.++++++++ +.|+....
T Consensus 241 ~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~~ 271 (291)
T 3mkr_A 241 VVLSQHLGKPPEVTNRYLSQLKD--AHRSHPFI 271 (291)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHH--hCCCChHH
Confidence 888888888765 5678888887 56776543
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.55 E-value=1.2e-13 Score=134.85 Aligned_cols=192 Identities=11% Similarity=0.014 Sum_probs=157.0
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 046775 431 MSDTFAGNSLVNMYAKCGSIDDADRAFSEIP---DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPN-HITLVSV 506 (771)
Q Consensus 431 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~l 506 (771)
|+++..+..+...|.+.|++++|...|++.. ..+...|..+...+.+.|++++|+..|++.++ ..|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 5677788889999999999999999999765 34577899999999999999999999999998 4565 4578888
Q ss_pred HHHHhcc-----------CcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHhHHHH
Q 046775 507 LCACNHA-----------GLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAMELVDTMP-FQANASVWGA 573 (771)
Q Consensus 507 l~a~~~~-----------g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p~~~~~~~ 573 (771)
..++... |++++|+..|++..+. .|+ ...|..+..+|.+.|++++|++.+++.- ...+..+|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8889999 9999999999998865 565 6788899999999999999999998862 2267789999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHH
Q 046775 574 LLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRF 627 (771)
Q Consensus 574 ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 627 (771)
+..++...|+.+.|...++++++++|+++..+..++.+|...|++++|.+.++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999887764
No 37
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.55 E-value=6.2e-12 Score=138.46 Aligned_cols=387 Identities=11% Similarity=0.006 Sum_probs=218.9
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhcCCcHHHHHHHHHHHHHccCCC-ChhHHHHHHH
Q 046775 162 IVSWNAVIAGCVLHEHNDWALKLFQQMKSSEINPNMFTYTSALKACAGMELKELGRQLHCSLIKMEIKS-DPIVGVGLVD 240 (771)
Q Consensus 162 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~-~~~~~~~Li~ 240 (771)
...||.|...+...|+.++|++.|++-.+. ..........| ...+++.+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~----------------------------~~~~~~~~~~~~~~~~~~nla~ 102 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEEL----------------------------IQQEHADQAEIRSLVTWGNYAW 102 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------HHHHSGGGCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------------------------HHhcCccccchHHHHHHHHHHH
Confidence 345677777777777777777777664321 00000001122 3456777888
Q ss_pred hhhcCCChHHHHHHhhhCCC-------C----CeehHHHHHHHHHh--CCChhHHHHHHHHHHHCCCCCCHhh-HHHHHH
Q 046775 241 MYAKCGSMDEARMIFHLMPE-------K----NLIAWNIVISGHLQ--NGGDMEAASLFPWMYREGVGFDQTT-LSTVLK 306 (771)
Q Consensus 241 ~y~~~g~~~~A~~~f~~m~~-------~----~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~pd~~t-~~~ll~ 306 (771)
.|...|++++|...|++... + ...+++.+..++.. .+++++|+..|++..+. .|+... +..+..
T Consensus 103 ~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~ 180 (472)
T 4g1t_A 103 VYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAI 180 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 88888888888887765432 1 12345555555554 45689999999998875 355433 333322
Q ss_pred H---HhccCChhHHHHHHHHHHHhcCCCchHHHhHHHHHHHh----cCCHHHHHHHHHhcC---CCceecHHHHHHHHHH
Q 046775 307 S---VASFQAIGVCKQVHALSVKTAFESDDYIVNSLIDAYGK----CGHVEDAVKIFKESS---AVDLVACTSMITAYAQ 376 (771)
Q Consensus 307 a---~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~ 376 (771)
+ ....++.+.+.+.+..+++.. +.+..++..+...+.. .|+.++|.+.+++.. +.+...|..+...|.+
T Consensus 181 ~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~ 259 (472)
T 4g1t_A 181 ASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRR 259 (472)
T ss_dssp HHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 3 344567778888888877764 3445555555544443 467788888887643 4566778888889999
Q ss_pred cCChHHHHHHHHHHhcCCCCCCH-hhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 046775 377 FGLGEEALKLYLEMQDREINPDS-FVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADR 455 (771)
Q Consensus 377 ~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~ 455 (771)
.|++++|+..|++..+. .|+. .++..+...+...+.... .. ....+.......+..+.|..
T Consensus 260 ~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~---------~~-------~~~~~~~~~~~~~~~~~A~~ 321 (472)
T 4g1t_A 260 KDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVM---------NL-------RENGMYGKRKLLELIGHAVA 321 (472)
T ss_dssp TTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhh---------hH-------HHHHHHHHHHHHhhHHHHHH
Confidence 99999999999988764 4543 333333333321111000 00 00011111112234567777
Q ss_pred HHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHhccCcHHHHHHHHHHHHHh
Q 046775 456 AFSEIP---DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHI--TLVSVLC-ACNHAGLVAEAKHHFESMEKK 529 (771)
Q Consensus 456 ~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~-a~~~~g~~~~a~~~~~~m~~~ 529 (771)
.|+... ..+..+|..+...|...|++++|++.|++.++....|... .+..+.. ...+.|+.++|+..|++..+
T Consensus 322 ~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~- 400 (472)
T 4g1t_A 322 HLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK- 400 (472)
T ss_dssp HHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH-
T ss_pred HHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-
Confidence 777654 4456789999999999999999999999999854333221 2222222 34578999999999998874
Q ss_pred hCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 046775 530 FGIQPMQEHYACMIDILGRAGKFQEAMELVDTM-PFQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVL 607 (771)
Q Consensus 530 ~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~ 607 (771)
+.|+.....-. ++.+.+++++. ...| ++.+|..|...+...|+.+.|...+++++++.|.+|.++.-
T Consensus 401 --i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 401 --INQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp --SCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred --cCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 46664332222 23333344332 2234 45689999999999999999999999999999998887654
Q ss_pred HH
Q 046775 608 LS 609 (771)
Q Consensus 608 l~ 609 (771)
++
T Consensus 470 ~G 471 (472)
T 4g1t_A 470 NG 471 (472)
T ss_dssp --
T ss_pred CC
Confidence 43
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.53 E-value=4.8e-13 Score=133.90 Aligned_cols=210 Identities=8% Similarity=-0.000 Sum_probs=151.7
Q ss_pred HhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC------CC----hhHHHHHHHHHHH
Q 046775 408 ACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPD------RG----IVSWSAMIGGLAQ 477 (771)
Q Consensus 408 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~------~~----~~~~~~li~~~~~ 477 (771)
.+...|++++|...+..+++.. .+..++..+...|.+.|++++|...|+.... ++ ...|..+...|..
T Consensus 14 ~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 91 (258)
T 3uq3_A 14 KFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHK 91 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHH
Confidence 3333444444444444444433 3444555555555566666666655555431 11 4567778888888
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHH
Q 046775 478 HGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAM 556 (771)
Q Consensus 478 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~ 556 (771)
.|++++|++.|++... +.|+.. .+...|++++|...++.+... .|+ ...|..+...+.+.|++++|.
T Consensus 92 ~~~~~~A~~~~~~a~~--~~~~~~-------~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~ 159 (258)
T 3uq3_A 92 LGDLKKTIEYYQKSLT--EHRTAD-------ILTKLRNAEKELKKAEAEAYV---NPEKAEEARLEGKEYFTKSDWPNAV 159 (258)
T ss_dssp TTCHHHHHHHHHHHHH--HCCCHH-------HHHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHHHh--cCchhH-------HHHHHhHHHHHHHHHHHHHHc---CcchHHHHHHHHHHHHHhcCHHHHH
Confidence 8888888888888887 456643 355568888888888887743 443 567788888888999999999
Q ss_pred HHHHhCC-CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 046775 557 ELVDTMP-FQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 557 ~~~~~m~-~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
+.+++.- ..| +..+|..+...+...|+.+.|...++++++++|+++..|..++.+|...|++++|.+.++...+.
T Consensus 160 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 160 KAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 8888762 334 46688888889999999999999999999999999999999999999999999999998877654
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.53 E-value=7.5e-13 Score=134.01 Aligned_cols=240 Identities=11% Similarity=-0.078 Sum_probs=187.2
Q ss_pred cCChHHHHHHHHHHhcCCCC--C-CHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 046775 377 FGLGEEALKLYLEMQDREIN--P-DSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDA 453 (771)
Q Consensus 377 ~g~~~~A~~l~~~m~~~g~~--p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A 453 (771)
.|++++|+..|+++.+.... | +..++..+...+...|++++|...+..+++.. +.+..++..+...|.+.|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 46677888888877765321 1 34566677777778888888888888887765 55778888999999999999999
Q ss_pred HHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhh
Q 046775 454 DRAFSEIP---DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKF 530 (771)
Q Consensus 454 ~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 530 (771)
...|++.. ..+..+|..+...|...|++++|+..|+++.+ ..|+.......+..+...|++++|..+++.....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 99998876 34578899999999999999999999999998 5677665555666667789999999999888765
Q ss_pred CCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC-----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh
Q 046775 531 GIQPMQEHYACMIDILGRAGKFQEAMELVDTMP-FQAN-----ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSST 604 (771)
Q Consensus 531 ~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p~-----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 604 (771)
.|+......++..+...+..++|.+.+++.- ..|+ ..+|..+...+...|+.+.|...++++++++|++...
T Consensus 174 --~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 174 --SDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp --SCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred --CCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 3333334457888888899999999998763 3332 4688889999999999999999999999999988665
Q ss_pred HHHHHHHHHhcCCchhHHHHH
Q 046775 605 HVLLSNIYASAGMWDNVAKVR 625 (771)
Q Consensus 605 ~~~l~~~y~~~g~~~~a~~~~ 625 (771)
+ +.++...|++++|.+..
T Consensus 252 ~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 H---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHhhHHHH
Confidence 4 56778888888886654
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.51 E-value=1e-12 Score=131.52 Aligned_cols=233 Identities=13% Similarity=0.033 Sum_probs=171.1
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCC--Cc----hhHHHH
Q 046775 366 ACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFM--SD----TFAGNS 439 (771)
Q Consensus 366 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~--~~----~~~~~~ 439 (771)
.|..+...|...|++++|+..|++..+.. ++...+..+..++...|++++|...+..+++.... ++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34555566666666666666666666554 55566666666666667777776666666553211 11 567777
Q ss_pred HHHHHHhcCCHHHHHHHHhhCC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcH
Q 046775 440 LVNMYAKCGSIDDADRAFSEIP--DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNH-ITLVSVLCACNHAGLV 516 (771)
Q Consensus 440 Li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~ 516 (771)
+...|.+.|++++|...|++.. .++ ...+...|++++|+..++++.. ..|+. ..+..+...+...|++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCH
Confidence 8888888888888888888765 233 2346667888899999998888 45554 3677778888889999
Q ss_pred HHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 046775 517 AEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTM-PFQAN-ASVWGALLGAARIYKNVEVGQHAAEML 594 (771)
Q Consensus 517 ~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~ 594 (771)
++|..+|++..+.. +.+...|..+..++.+.|++++|.+.+++. ...|+ ..+|..+...+...|+.+.|...++++
T Consensus 156 ~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999887652 234677888899999999999999988876 24454 568888888999999999999999999
Q ss_pred HhcC------CCCchhHHHHHHH
Q 046775 595 FAIE------PEKSSTHVLLSNI 611 (771)
Q Consensus 595 ~~l~------p~~~~~~~~l~~~ 611 (771)
++++ |++...+..|..+
T Consensus 234 ~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 234 RTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHhChhhcCCCchHHHHHHHHHh
Confidence 9999 8887777766654
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.48 E-value=1.3e-12 Score=132.19 Aligned_cols=255 Identities=10% Similarity=-0.055 Sum_probs=159.1
Q ss_pred HHHhHHHHHHHhcCCHHHHHHHHHhcC---CCceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCH--hhHHHHHHH
Q 046775 334 YIVNSLIDAYGKCGHVEDAVKIFKESS---AVDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDS--FVCSSLLNA 408 (771)
Q Consensus 334 ~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a 408 (771)
.+.......|.+.|++++|...|++.. +.+...|..+...|.+.|++++|++.|++.......|+. ..+..+...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 345556677888888888888887753 244557888888888888888888888888763312221 235666667
Q ss_pred hhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHH
Q 046775 409 CANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPD---RGIVSWSAMIGGLAQHGRGKEAL 485 (771)
Q Consensus 409 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 485 (771)
+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|++... .+...|..+...+...+++++|+
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777654 44556677777777777777777777776652 23455555552333344677777
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHhccCc---HHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHh
Q 046775 486 QMFGQMLEDGVLPN-HITLVSVLCACNHAGL---VAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDT 561 (771)
Q Consensus 486 ~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~ 561 (771)
+.|+++.+ ..|+ ...+..+..++...|. .++|...|++..+...-.|+.. -.
T Consensus 163 ~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~--------------------- 218 (272)
T 3u4t_A 163 SSFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-KD--------------------- 218 (272)
T ss_dssp HHHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-HH---------------------
T ss_pred HHHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-hH---------------------
Confidence 77777666 3344 3344445555554454 4445555444433221111110 00
Q ss_pred CCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 046775 562 MPFQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGM 617 (771)
Q Consensus 562 m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 617 (771)
.-..+|..+...+...|+.+.|...++++++++|+|+.++-.+..+....+.
T Consensus 219 ----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 270 (272)
T 3u4t_A 219 ----ELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270 (272)
T ss_dssp ----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--------
T ss_pred ----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccccc
Confidence 0013566777788889999999999999999999999988888776665543
No 42
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.46 E-value=2.2e-12 Score=136.53 Aligned_cols=242 Identities=12% Similarity=0.030 Sum_probs=191.6
Q ss_pred ecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCC-HhhHHHHHHHhhcccc-hHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 046775 365 VACTSMITAYAQFGLGEEALKLYLEMQDREINPD-SFVCSSLLNACANLSA-YEQGKQVHVHIIKFGFMSDTFAGNSLVN 442 (771)
Q Consensus 365 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~-~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 442 (771)
..|+.+...+.+.|++++|++.|++.... .|+ ...|..+..++...|+ +++|...+..+++.. +.+..+|+.+..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 45666777777788888888888887763 443 4556666777777785 888888888888776 567788888999
Q ss_pred HHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhc-cCcHH
Q 046775 443 MYAKCGSIDDADRAFSEIP---DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPN-HITLVSVLCACNH-AGLVA 517 (771)
Q Consensus 443 ~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~-~g~~~ 517 (771)
+|.+.|++++|...|+++. ..+...|..+...+...|++++|+..|+++++ +.|+ ...+..+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999998776 45678899999999999999999999999998 4564 5578888888888 66657
Q ss_pred HH-----HHHHHHHHHhhCCCCC-cchHHHHHHHHhhcC--CHHHHHHHHHhCCCCCCH-hHHHHHHHHHHhcC------
Q 046775 518 EA-----KHHFESMEKKFGIQPM-QEHYACMIDILGRAG--KFQEAMELVDTMPFQANA-SVWGALLGAARIYK------ 582 (771)
Q Consensus 518 ~a-----~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g--~~~eA~~~~~~m~~~p~~-~~~~~ll~a~~~~~------ 582 (771)
+| +.+|++..+. .|+ ...|..+..+|.+.| ++++|+++++++...|+. .++..|...+...|
T Consensus 253 eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 77 5788887754 666 667888888999988 689999999888666654 47777777777653
Q ss_pred --C-HHHHHHHHHHH-HhcCCCCchhHHHHHHHHHh
Q 046775 583 --N-VEVGQHAAEML-FAIEPEKSSTHVLLSNIYAS 614 (771)
Q Consensus 583 --~-~~~a~~~~~~~-~~l~p~~~~~~~~l~~~y~~ 614 (771)
+ .+.|..+++++ .+++|.....|..++..+..
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 2 58999999999 99999999999888876654
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.44 E-value=9.5e-12 Score=121.41 Aligned_cols=198 Identities=11% Similarity=-0.037 Sum_probs=137.1
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046775 432 SDTFAGNSLVNMYAKCGSIDDADRAFSEIP---DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLC 508 (771)
Q Consensus 432 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 508 (771)
.++.++..+...|...|++++|...|+.+. ..+...|..+...|...|++++|++.|+++.+.. +.+..++..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 345566667777777777777777776654 3345667777777777777777777777777632 234556666777
Q ss_pred HHhcc-CcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhcCCH
Q 046775 509 ACNHA-GLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAMELVDTMP-FQA-NASVWGALLGAARIYKNV 584 (771)
Q Consensus 509 a~~~~-g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~~~~ 584 (771)
.+... |++++|..+|+.+.+ .+..|+ ...+..+...+.+.|++++|.+.++++. ..| +..+|..+...+...|+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 77777 777777777777765 223343 4566677777777777777777776652 334 355677777777777888
Q ss_pred HHHHHHHHHHHhcCC-CCchhHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 046775 585 EVGQHAAEMLFAIEP-EKSSTHVLLSNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 585 ~~a~~~~~~~~~l~p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
+.|...++++++..| +++..+..++.+|...|+++++..+.+.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 888888888888877 77777777777777888888777777776543
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.44 E-value=6.6e-12 Score=125.31 Aligned_cols=196 Identities=12% Similarity=-0.034 Sum_probs=127.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046775 434 TFAGNSLVNMYAKCGSIDDADRAFSEIP---DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCAC 510 (771)
Q Consensus 434 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 510 (771)
...+..+...|...|++++|...|+++. ..+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 3455556666666666666666666544 2345566666666777777777777777766632 22445566666666
Q ss_pred hccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhcCCHHHH
Q 046775 511 NHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAMELVDTMP-FQA-NASVWGALLGAARIYKNVEVG 587 (771)
Q Consensus 511 ~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~~~~~~a 587 (771)
...|++++|.++|+++.+ .+..|+ ...+..++.++.+.|++++|.+.+++.. ..| +..+|..+...+...|+.+.|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 677777777777776654 123443 4556666677777777777777766652 233 345666677777777777777
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 046775 588 QHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 588 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
...++++++..|++...+..++.+|...|++++|.+.++.+.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777766554
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.43 E-value=2.4e-11 Score=121.23 Aligned_cols=206 Identities=17% Similarity=0.082 Sum_probs=145.4
Q ss_pred eecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 046775 364 LVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNM 443 (771)
Q Consensus 364 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~ 443 (771)
...|..+...|...|++++|++.|+++... . +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----------------------------------~-~~~~~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI-----------------------------------D-PSSADAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH-----------------------------------C-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----------------------------------C-CChHHHHHHHHHH
Confidence 445556666666666666666666665543 2 2344555666666
Q ss_pred HHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHH
Q 046775 444 YAKCGSIDDADRAFSEIP---DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNH-ITLVSVLCACNHAGLVAEA 519 (771)
Q Consensus 444 y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a 519 (771)
|.+.|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++...+..|+. ..+..+...+...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 666677777766666543 334566777777777788888888888877764445544 4666777778888888888
Q ss_pred HHHHHHHHHhhCCCC-CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046775 520 KHHFESMEKKFGIQP-MQEHYACMIDILGRAGKFQEAMELVDTM-PFQA-NASVWGALLGAARIYKNVEVGQHAAEMLFA 596 (771)
Q Consensus 520 ~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~ 596 (771)
..+|+++.+. .| +...+..++.++.+.|++++|.+.++++ ...| +...|..+...+...|+.+.|...++++++
T Consensus 161 ~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 161 KEYFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8888887754 33 3667788888888888888888888876 3344 455777788888899999999999999999
Q ss_pred cCCCCchhHHHH
Q 046775 597 IEPEKSSTHVLL 608 (771)
Q Consensus 597 l~p~~~~~~~~l 608 (771)
+.|+++.....+
T Consensus 238 ~~p~~~~~~~~l 249 (252)
T 2ho1_A 238 LYPGSLEYQEFQ 249 (252)
T ss_dssp HCTTSHHHHHHH
T ss_pred HCCCCHHHHHHH
Confidence 999888765443
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.42 E-value=2.1e-11 Score=118.94 Aligned_cols=197 Identities=15% Similarity=0.071 Sum_probs=137.5
Q ss_pred hhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHc-CChHHH
Q 046775 409 CANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIP---DRGIVSWSAMIGGLAQH-GRGKEA 484 (771)
Q Consensus 409 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~-g~~~~A 484 (771)
+...|++++|...+..+.+.. +.+..++..+...|...|++++|...|+++. ..+..+|..+...|... |++++|
T Consensus 18 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A 96 (225)
T 2vq2_A 18 YMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAES 96 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHH
Confidence 333333333333333333332 2334456666666677777777777776654 33456777778888888 888888
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhC
Q 046775 485 LQMFGQMLEDGVLPNH-ITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAMELVDTM 562 (771)
Q Consensus 485 ~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m 562 (771)
+..|+++.+.+..|+. ..+..+..++...|++++|..+|+++.+. .|+ ...+..++.++.+.|++++|.+.++++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 173 (225)
T 2vq2_A 97 MAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKY 173 (225)
T ss_dssp HHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888774344543 46777777888888888888888887754 343 667788888888888888888888876
Q ss_pred C-CCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 046775 563 P-FQA--NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLS 609 (771)
Q Consensus 563 ~-~~p--~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 609 (771)
- ..| +...|..+...+...|+.+.+....+.+.+.+|+++.....+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 223 (225)
T 2vq2_A 174 QSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVLT 223 (225)
T ss_dssp HHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred HHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHhc
Confidence 2 333 4556766667778899999999999999999999988776654
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.42 E-value=3.5e-12 Score=126.40 Aligned_cols=178 Identities=12% Similarity=0.018 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 046775 435 FAGNSLVNMYAKCGSIDDADRAFSEIP---DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACN 511 (771)
Q Consensus 435 ~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 511 (771)
.++..+...|.+.|++++|...|+++. ..+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+.
T Consensus 58 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 136 (243)
T 2q7f_A 58 IPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLV 136 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 344444444555555555555554433 2234555556666666666666666666666532 223445555666666
Q ss_pred ccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhcCCHHHHHH
Q 046775 512 HAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMP-FQA-NASVWGALLGAARIYKNVEVGQH 589 (771)
Q Consensus 512 ~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~~~~~~a~~ 589 (771)
..|++++|..+++++.+.. +.+...+..+..++.+.|++++|.+.++++. ..| +..+|..+...+...|+.+.|..
T Consensus 137 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 214 (243)
T 2q7f_A 137 KLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALE 214 (243)
T ss_dssp HTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHH
T ss_pred HhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHH
Confidence 6666666666666665431 2234556666666666666666666666542 223 34566677777777777777777
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHhc
Q 046775 590 AAEMLFAIEPEKSSTHVLLSNIYASA 615 (771)
Q Consensus 590 ~~~~~~~l~p~~~~~~~~l~~~y~~~ 615 (771)
.++++++++|+++..+..++.+....
T Consensus 215 ~~~~~~~~~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 215 MLDKAIDIQPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp HHHHHHHHCTTCHHHHHHHTC-----
T ss_pred HHHHHHccCcchHHHHHHHHHHHhhc
Confidence 77777777777777776666554433
No 48
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.40 E-value=1.3e-11 Score=120.16 Aligned_cols=191 Identities=14% Similarity=-0.005 Sum_probs=106.6
Q ss_pred ecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 046775 365 VACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMY 444 (771)
Q Consensus 365 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y 444 (771)
..|..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+..+++.. |.+...+..+...|
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~ 83 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAY 83 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 344444445555555555555555554321 1223344444444555555555555555555443 33445555555555
Q ss_pred Hhc-----------CCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046775 445 AKC-----------GSIDDADRAFSEIP---DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCAC 510 (771)
Q Consensus 445 ~k~-----------g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 510 (771)
.+. |++++|...|++.. ..+...|..+...|...|++++|+..|++.++.. .+...+..+..++
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~ 161 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELY 161 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHH
Confidence 555 77777777776654 2345667777777777777777777777777755 5666677777777
Q ss_pred hccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhC
Q 046775 511 NHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAMELVDTM 562 (771)
Q Consensus 511 ~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m 562 (771)
...|++++|+..|++..+. .|+ ...+..+..++.+.|++++|.+.+++.
T Consensus 162 ~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 162 LSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC--------------
T ss_pred HHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 7777777777777777654 443 556667777777777777777776653
No 49
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.40 E-value=2.2e-11 Score=132.93 Aligned_cols=369 Identities=12% Similarity=0.023 Sum_probs=173.1
Q ss_pred HHhcCCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCh---hHHHHHHccCCCCCcccHHHHHHHHHhCC-----
Q 046775 105 ACAGSGDSLLGRKIHGYSIKLGYDSDMFSANALVDMYAKVGNL---EDAVAVFKDIEHPDIVSWNAVIAGCVLHE----- 176 (771)
Q Consensus 105 ~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~---~~A~~~f~~~~~~~~~~~n~li~~~~~~g----- 176 (771)
.+.+.|++++|.+++....+.| +...+..|-.+|...|+. ++|.+.|++..+.+...+..|...+...+
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 3344556666666666666655 222333444555556666 77777777766656666666666455554
Q ss_pred ChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhcCCcH---HHHHHHHHHHHHccCCCChhHHHHHHHhhhcCC----ChH
Q 046775 177 HNDWALKLFQQMKSSEINPNMFTYTSALKACAGMELK---ELGRQLHCSLIKMEIKSDPIVGVGLVDMYAKCG----SMD 249 (771)
Q Consensus 177 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~---~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g----~~~ 249 (771)
+.++|+..|++..+.|... .+..+-..+...+.. ..+.+.+......| ++.....|..+|...+ ..+
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHH
T ss_pred CHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHH
Confidence 6677888888877765332 333444444333322 22334444444433 3455666777777766 445
Q ss_pred HHHHHhhhCCCCCeehHHHHHHHHHhCC---ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 046775 250 EARMIFHLMPEKNLIAWNIVISGHLQNG---GDMEAASLFPWMYREGVGFDQTTLSTVLKSVASFQAIGVCKQVHALSVK 326 (771)
Q Consensus 250 ~A~~~f~~m~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 326 (771)
.+..+++.....+..++..+...|...| +.++|+..|++..+.|
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g--------------------------------- 209 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG--------------------------------- 209 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT---------------------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC---------------------------------
Confidence 5556666666666668888888888888 7788888888877765
Q ss_pred hcCCCchHHHhHHHHHHHhc----CCHHHHHHHHHhcCCCceecHHHHHHH-H--HHcCChHHHHHHHHHHhcCCCCCCH
Q 046775 327 TAFESDDYIVNSLIDAYGKC----GHVEDAVKIFKESSAVDLVACTSMITA-Y--AQFGLGEEALKLYLEMQDREINPDS 399 (771)
Q Consensus 327 ~g~~~~~~~~~~Li~~y~k~----g~~~~A~~~f~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~p~~ 399 (771)
+++...+..|..+|... ++.++|.+.|++....+...+..+... | ...+++++|++.|++..+.| +.
T Consensus 210 ---~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~ 283 (452)
T 3e4b_A 210 ---TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QP 283 (452)
T ss_dssp ---CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CH
T ss_pred ---CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 22222223344444332 455555555554432233444444444 2 23455555666555555443 22
Q ss_pred hhHHHHHHHhhccc-----chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhhCCCC-ChhHHH
Q 046775 400 FVCSSLLNACANLS-----AYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAK----CGSIDDADRAFSEIPDR-GIVSWS 469 (771)
Q Consensus 400 ~t~~~ll~a~~~~~-----~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~~~~~-~~~~~~ 469 (771)
.....+-..+. .| ++++|...+.... +.++.....|..+|.. ..++++|...|+...+. +..+..
T Consensus 284 ~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~ 358 (452)
T 3e4b_A 284 RAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADF 358 (452)
T ss_dssp HHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHH
T ss_pred HHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHH
Confidence 22222222222 22 4444444444443 2234444445555544 22555555555544422 233444
Q ss_pred HHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 046775 470 AMIGGLAQ----HGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESME 527 (771)
Q Consensus 470 ~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 527 (771)
.|...|.. ..+..+|...|+...+.| .|+.......+..-...+..++|..+.++..
T Consensus 359 ~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g-~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 359 AIAQLFSQGKGTKPDPLNAYVFSQLAKAQD-TPEANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHHHHSCTTBCCCHHHHHHHHHHHHTTC-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 44444432 235555666665555554 2222222222322233334445555544443
No 50
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.39 E-value=3.7e-11 Score=121.32 Aligned_cols=227 Identities=11% Similarity=-0.032 Sum_probs=180.9
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcCCHHHHHHHHHhcCC--Ccee----cHHHHHH
Q 046775 299 TTLSTVLKSVASFQAIGVCKQVHALSVKTAFESDDYIVNSLIDAYGKCGHVEDAVKIFKESSA--VDLV----ACTSMIT 372 (771)
Q Consensus 299 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~~~----~~~~li~ 372 (771)
..+...-..+...|+++.|...+..+++.. +.+..++..+...|.+.|++++|.+.|++... .+.. +|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 344555667788999999999999998865 34566888899999999999999999987654 2222 3889999
Q ss_pred HHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHH-HHHHhcCCHH
Q 046775 373 AYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLV-NMYAKCGSID 451 (771)
Q Consensus 373 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li-~~y~k~g~~~ 451 (771)
.|.+.|++++|++.|++..+.. +.+..++..+...+...|++++|...+..+++.. +.+..++..+. ..|. .++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~~~~ 159 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NKEYV 159 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HHHHH
Confidence 9999999999999999998753 3355788889999999999999999999988764 56677888888 5555 45999
Q ss_pred HHHHHHhhCC---CCChhHHHHHHHHHHHcCC---hHHHHHHHHHHHHCC-CCCCH------HHHHHHHHHHhccCcHHH
Q 046775 452 DADRAFSEIP---DRGIVSWSAMIGGLAQHGR---GKEALQMFGQMLEDG-VLPNH------ITLVSVLCACNHAGLVAE 518 (771)
Q Consensus 452 ~A~~~f~~~~---~~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g-~~pd~------~t~~~ll~a~~~~g~~~~ 518 (771)
+|.+.|+... ..+...|..+...+...|+ .++|+..|++..+.. -.|+. .++..+...+...|++++
T Consensus 160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 9999999876 3446788888889988898 888999999988731 12441 356667777888888888
Q ss_pred HHHHHHHHHHh
Q 046775 519 AKHHFESMEKK 529 (771)
Q Consensus 519 a~~~~~~m~~~ 529 (771)
|.++|++..+.
T Consensus 240 A~~~~~~al~~ 250 (272)
T 3u4t_A 240 ADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 88888887754
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.39 E-value=6.5e-12 Score=124.40 Aligned_cols=197 Identities=11% Similarity=0.058 Sum_probs=154.3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046775 432 SDTFAGNSLVNMYAKCGSIDDADRAFSEIP---DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLC 508 (771)
Q Consensus 432 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 508 (771)
.....+..+...|.+.|++++|...|+++. ..+...|..+...|...|++++|++.|+++.+.. +.+..++..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 455667778888999999999999998875 3457889999999999999999999999999852 335668888889
Q ss_pred HHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhcCCHHH
Q 046775 509 ACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMP-FQA-NASVWGALLGAARIYKNVEV 586 (771)
Q Consensus 509 a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~~~~~~ 586 (771)
.+...|++++|.++|+++.+.. +.+...+..+..++.+.|++++|.+.++++. ..| +..+|..+...+...|+.+.
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998652 3346788899999999999999999998873 334 56688889999999999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 046775 587 GQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 587 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
|...++++++..|+++..+..++.+|...|++++|.+.++.+.+.
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999988664
No 52
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.39 E-value=4.6e-11 Score=130.36 Aligned_cols=338 Identities=14% Similarity=0.031 Sum_probs=161.2
Q ss_pred hcCCcHHHHHHHHHHHHHccCCCChhHHHHHHHhhhcCCCh---HHHHHHhhhCCCCCeehHHHHHHHHHhCC-----Ch
Q 046775 208 AGMELKELGRQLHCSLIKMEIKSDPIVGVGLVDMYAKCGSM---DEARMIFHLMPEKNLIAWNIVISGHLQNG-----GD 279 (771)
Q Consensus 208 ~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~---~~A~~~f~~m~~~~~~~~~~li~~~~~~g-----~~ 279 (771)
.+.|+++.|.+++..+.+.| ++..+..|..+|...|+. ++|...|+...+.+...+..+...+...+ ++
T Consensus 14 ~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~ 90 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEH 90 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHH
T ss_pred HhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCH
Confidence 34455555555555555544 222333355555666666 78888887776666667777776555555 66
Q ss_pred hHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCh---hHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcCC----HHHH
Q 046775 280 MEAASLFPWMYREGVGFDQTTLSTVLKSVASFQAI---GVCKQVHALSVKTAFESDDYIVNSLIDAYGKCGH----VEDA 352 (771)
Q Consensus 280 ~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~---~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~----~~~A 352 (771)
++|+..|++..+.|... .+..+-..+...+.. ..+.+.+......| ++.....|..+|...+. .+.+
T Consensus 91 ~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a 164 (452)
T 3e4b_A 91 HEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDV 164 (452)
T ss_dssp HHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHH
T ss_pred HHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHH
Confidence 78888888877765322 233333333333222 22222222222222 23344455555555552 3334
Q ss_pred HHHHHhcCCCceecHHHHHHHHHHcC---ChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHhC
Q 046775 353 VKIFKESSAVDLVACTSMITAYAQFG---LGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKFG 429 (771)
Q Consensus 353 ~~~f~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 429 (771)
..+++.....++.++..|...|.+.| +.++|++.|++..+ .|
T Consensus 165 ~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~-----------------------------------~g 209 (452)
T 3e4b_A 165 ERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVS-----------------------------------RG 209 (452)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------------------------------TT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH-----------------------------------CC
Confidence 44444444444445555555555555 45555555555444 43
Q ss_pred CCCchhHHHHHHHHHHhc----CCHHHHHHHHhhCCCCChhHHHHHHHH-H--HHcCChHHHHHHHHHHHHCCCCCCHHH
Q 046775 430 FMSDTFAGNSLVNMYAKC----GSIDDADRAFSEIPDRGIVSWSAMIGG-L--AQHGRGKEALQMFGQMLEDGVLPNHIT 502 (771)
Q Consensus 430 ~~~~~~~~~~Li~~y~k~----g~~~~A~~~f~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~pd~~t 502 (771)
+++...+..|..+|... +++++|...|+.....+...+..+... | ...|+.++|++.|++..+.| +...
T Consensus 210 -~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A 285 (452)
T 3e4b_A 210 -TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRA 285 (452)
T ss_dssp -CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHH
T ss_pred -CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 33333334455555433 566666666665552234555555554 3 34667777777777777655 4444
Q ss_pred HHHHHHHHhccC-----cHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHhHHHH
Q 046775 503 LVSVLCACNHAG-----LVAEAKHHFESMEKKFGIQPMQEHYACMIDILGR----AGKFQEAMELVDTMPFQANASVWGA 573 (771)
Q Consensus 503 ~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r----~g~~~eA~~~~~~m~~~p~~~~~~~ 573 (771)
...+...|. .| +.++|..+|++.. .-+...+..|..+|.. ..++++|.+++++..-.-+......
T Consensus 286 ~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~ 359 (452)
T 3e4b_A 286 ELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFA 359 (452)
T ss_dssp HHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHH
T ss_pred HHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHH
Confidence 555555454 34 6777777766653 2234445555555544 3367777777766532223334444
Q ss_pred HHHHHH----hcCCHHHHHHHHHHHHhcCC
Q 046775 574 LLGAAR----IYKNVEVGQHAAEMLFAIEP 599 (771)
Q Consensus 574 ll~a~~----~~~~~~~a~~~~~~~~~l~p 599 (771)
|...+. ..+|.+.|...++++.+..+
T Consensus 360 Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 360 IAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 444433 23477777777777776654
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.39 E-value=1.1e-10 Score=117.96 Aligned_cols=224 Identities=8% Similarity=-0.096 Sum_probs=122.9
Q ss_pred ceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhc----ccchHHHHHHHHHHHHhCCCCchhHHH
Q 046775 363 DLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACAN----LSAYEQGKQVHVHIIKFGFMSDTFAGN 438 (771)
Q Consensus 363 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~ 438 (771)
+..++..+...|.+.|++++|++.|++..+. .+...+..+...+.. .+++++|...+..+.+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 3445555556666666666666666665542 122333333344444 444444444444444433
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--
Q 046775 439 SLVNMYAKCGSIDDADRAFSEIPDRGIVSWSAMIGGLAQ----HGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNH-- 512 (771)
Q Consensus 439 ~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~-- 512 (771)
+..+|..+...|.. .|++++|++.|++..+.+ +...+..+...+..
T Consensus 73 -------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 73 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred -------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC
Confidence 33444445555555 555555555555555543 34444455555555
Q ss_pred --cCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHh----cC
Q 046775 513 --AGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGR----AGKFQEAMELVDTMPFQANASVWGALLGAARI----YK 582 (771)
Q Consensus 513 --~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r----~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~----~~ 582 (771)
.|+.++|..+|++..+. + +...+..+..+|.+ .|++++|.+.+++..-..+...+..+...+.. .+
T Consensus 125 ~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred CcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCc
Confidence 55555555555555432 1 23344445555555 55666666665554212234455555556666 66
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh----cCCchhHHHHHHHHHhCC
Q 046775 583 NVEVGQHAAEMLFAIEPEKSSTHVLLSNIYAS----AGMWDNVAKVRRFMKDNK 632 (771)
Q Consensus 583 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~g 632 (771)
+.+.|...++++++.+| +.++..|+.+|.. .|++++|.+.++...+.|
T Consensus 201 ~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 201 NFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 77777777777777655 5666777777777 777777777777666554
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.37 E-value=8.4e-12 Score=132.09 Aligned_cols=222 Identities=9% Similarity=0.033 Sum_probs=190.1
Q ss_pred hhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-HHHHHHHHhhCC---CCChhHHHHHHHHH
Q 046775 400 FVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGS-IDDADRAFSEIP---DRGIVSWSAMIGGL 475 (771)
Q Consensus 400 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~-~~~A~~~f~~~~---~~~~~~~~~li~~~ 475 (771)
..+..+...+...|+++.|...+..+++.. +.+..+++.+...|.+.|+ +++|...|++.. ..+...|+.+...|
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 346666677788899999999999999987 6678899999999999997 999999999876 45678999999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhh-cCCH
Q 046775 476 AQHGRGKEALQMFGQMLEDGVLPN-HITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGR-AGKF 552 (771)
Q Consensus 476 ~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r-~g~~ 552 (771)
...|++++|+..|+++++ +.|+ ...|..+..++...|++++|+.+|+++.+. .|+ ...|..+..+|.+ .|..
T Consensus 177 ~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999 5564 568999999999999999999999999865 565 6788999999999 6776
Q ss_pred HHH-----HHHHHhC-CCCCC-HhHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC-------
Q 046775 553 QEA-----MELVDTM-PFQAN-ASVWGALLGAARIYK--NVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAG------- 616 (771)
Q Consensus 553 ~eA-----~~~~~~m-~~~p~-~~~~~~ll~a~~~~~--~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g------- 616 (771)
++| ++.+++. ...|+ ..+|..+...+...| +.+.|...++++ +.+|+++.++..|+.+|...|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 777 4666665 35664 569999998888877 689999999998 999999999999999999985
Q ss_pred --CchhHHHHHHHH
Q 046775 617 --MWDNVAKVRRFM 628 (771)
Q Consensus 617 --~~~~a~~~~~~m 628 (771)
..++|.++++.+
T Consensus 331 ~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 331 EDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 258898888877
No 55
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.37 E-value=8.9e-11 Score=118.78 Aligned_cols=229 Identities=13% Similarity=0.010 Sum_probs=147.7
Q ss_pred CchHHHhHHHHHHHhcCCHHHHHHHHHhcCC-CceecHHHHHHHHHH----cCChHHHHHHHHHHhcCCCCCCHhhHHHH
Q 046775 331 SDDYIVNSLIDAYGKCGHVEDAVKIFKESSA-VDLVACTSMITAYAQ----FGLGEEALKLYLEMQDREINPDSFVCSSL 405 (771)
Q Consensus 331 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 405 (771)
.+...+..+...|...|++++|.+.|++..+ .+..++..+...|.+ .+++++|+..|++..+.+ +...+..+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 4567788899999999999999999987654 456778889999999 999999999999998765 55666666
Q ss_pred HHHhhc----ccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhhCCCCChhHHHHHHHHHHH
Q 046775 406 LNACAN----LSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAK----CGSIDDADRAFSEIPDRGIVSWSAMIGGLAQ 477 (771)
Q Consensus 406 l~a~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~ 477 (771)
-..+.. .+++++|...+..+.+.+ ++..+..|..+|.+ .|++++|
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A------------------------ 133 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKA------------------------ 133 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH------------------------
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHH------------------------
Confidence 666666 677777777777666653 44455555555555 4455444
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhh----c
Q 046775 478 HGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNH----AGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGR----A 549 (771)
Q Consensus 478 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r----~ 549 (771)
++.|++..+.+ +...+..+...+.. .++.++|..+|++..+. .+...+..+..+|.+ .
T Consensus 134 -------~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 134 -------VEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp -------HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSC
T ss_pred -------HHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCC
Confidence 44444444433 23333344444444 45555555555554432 123344455555555 6
Q ss_pred CCHHHHHHHHHhCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCch
Q 046775 550 GKFQEAMELVDTMPFQANASVWGALLGAARI----YKNVEVGQHAAEMLFAIEPEKSS 603 (771)
Q Consensus 550 g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~----~~~~~~a~~~~~~~~~l~p~~~~ 603 (771)
|++++|.+.+++..-..+...+..|...+.. .+|.+.|...++++.++.|+++.
T Consensus 200 ~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 200 KNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 6666666666554211224456666666666 77888888888888888885443
No 56
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.36 E-value=4.3e-12 Score=139.48 Aligned_cols=206 Identities=9% Similarity=0.009 Sum_probs=169.5
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH-HHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 046775 415 YEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSI-DDADRAFSEIP---DRGIVSWSAMIGGLAQHGRGKEALQMFGQ 490 (771)
Q Consensus 415 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~-~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 490 (771)
++.+.+.+....+.. +.+...+..+...|...|++ ++|.+.|++.. ..+...|..+...|...|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444433322 45667777788888888888 88888887765 33467888999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHhcc---------CcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhc--------CCH
Q 046775 491 MLEDGVLPNHITLVSVLCACNHA---------GLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRA--------GKF 552 (771)
Q Consensus 491 m~~~g~~pd~~t~~~ll~a~~~~---------g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~--------g~~ 552 (771)
..+ +.|+...+..+..++... |++++|.++|++..+. .|+ ...|..+..+|.+. |++
T Consensus 163 al~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 163 ALT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 988 568877888888889888 9999999999998865 454 67788889999888 999
Q ss_pred HHHHHHHHhCC-CCC----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHH
Q 046775 553 QEAMELVDTMP-FQA----NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRR 626 (771)
Q Consensus 553 ~eA~~~~~~m~-~~p----~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 626 (771)
++|.+.+++.- ..| +...|..+..++...|+.+.|...++++++++|+++.++..++.++...|++++|.+...
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999998873 456 566899999999999999999999999999999999999999999999999999987543
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.34 E-value=1.8e-11 Score=131.50 Aligned_cols=197 Identities=15% Similarity=0.055 Sum_probs=127.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHHcCC--------------------hHHH
Q 046775 434 TFAGNSLVNMYAKCGSIDDADRAFSEIPD-----RG----IVSWSAMIGGLAQHGR--------------------GKEA 484 (771)
Q Consensus 434 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A 484 (771)
..++..+...|...|++++|...|++... .+ ..+|..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 33455566666666666666666665431 11 2356666677777777 7777
Q ss_pred HHHHHHHHHC----CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC----cchHHHHHHHHhhcCCHHHH
Q 046775 485 LQMFGQMLED----GVLPNH-ITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM----QEHYACMIDILGRAGKFQEA 555 (771)
Q Consensus 485 ~~l~~~m~~~----g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~----~~~y~~lv~~l~r~g~~~eA 555 (771)
++.+++.... +..|.. .++..+...+...|++++|..+|++..+...-.++ ...|..+..++.+.|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 7777665541 112222 25666667777778888888877776644222222 23677777788888888888
Q ss_pred HHHHHhCC----CCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------chhHHHHHHHHHhcCCchhH
Q 046775 556 MELVDTMP----FQAN----ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEK------SSTHVLLSNIYASAGMWDNV 621 (771)
Q Consensus 556 ~~~~~~m~----~~p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~------~~~~~~l~~~y~~~g~~~~a 621 (771)
.+.+++.- ..++ ..+|..+...+...|+.+.|...+++++++.|.. ...+..++.+|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 87776641 1112 3366677777788888888888888888775443 55677888888888888888
Q ss_pred HHHHHHHHh
Q 046775 622 AKVRRFMKD 630 (771)
Q Consensus 622 ~~~~~~m~~ 630 (771)
.+.++...+
T Consensus 327 ~~~~~~al~ 335 (406)
T 3sf4_A 327 MHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888776544
No 58
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.33 E-value=2.2e-11 Score=123.06 Aligned_cols=217 Identities=14% Similarity=0.013 Sum_probs=180.6
Q ss_pred hcccchHHHHHHHHHHHHhCC---CCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHH
Q 046775 410 ANLSAYEQGKQVHVHIIKFGF---MSDTFAGNSLVNMYAKCGSIDDADRAFSEIP---DRGIVSWSAMIGGLAQHGRGKE 483 (771)
Q Consensus 410 ~~~~~~~~a~~i~~~~~~~g~---~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~ 483 (771)
...+++++|...+..+++... +.+..++..+...|...|++++|...|++.. ..+..+|..+...|...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 455889999999999988642 2356788899999999999999999999876 4467899999999999999999
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC
Q 046775 484 ALQMFGQMLEDGVLP-NHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTM 562 (771)
Q Consensus 484 A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m 562 (771)
|+..|+++.+. .| +..++..+...+...|++++|..+|+++.+. .|+...+......+.+.|++++|...+++.
T Consensus 96 A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 96 AYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999994 45 4668889999999999999999999999865 576655566666778889999999999665
Q ss_pred -C-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CchhHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 046775 563 -P-FQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPE----KSSTHVLLSNIYASAGMWDNVAKVRRFMKDNK 632 (771)
Q Consensus 563 -~-~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~----~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 632 (771)
. ..++...|. ++..+...++.+.|...++++++..|. ++..+..++.+|...|++++|.+.++...+..
T Consensus 171 ~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 171 FEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 2 234444554 677777888889999999999988774 37889999999999999999999999887654
No 59
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.33 E-value=6.1e-11 Score=111.97 Aligned_cols=162 Identities=15% Similarity=0.106 Sum_probs=117.5
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHH
Q 046775 465 IVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNH-ITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACM 542 (771)
Q Consensus 465 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~l 542 (771)
...|..+...|.+.|++++|++.|++.++ +.|+. .++..+..++...|++++|...+...... .|+ ...+..+
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ 79 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYIL 79 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHHH
Confidence 45566677777777777777777777766 34543 35666666777777777777777776643 333 4456666
Q ss_pred HHHHhhcCCHHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchh
Q 046775 543 IDILGRAGKFQEAMELVDTMP-FQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDN 620 (771)
Q Consensus 543 v~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 620 (771)
...+...+++++|.+.+++.. ..| +..+|..+...+...|+.+.|...++++++++|+++.+|..++.+|...|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 677777777777777776652 344 355777777788888888888888888888899888888889999999999999
Q ss_pred HHHHHHHHHhC
Q 046775 621 VAKVRRFMKDN 631 (771)
Q Consensus 621 a~~~~~~m~~~ 631 (771)
|.+.++...+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 98888876554
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.33 E-value=9.8e-12 Score=134.07 Aligned_cols=197 Identities=13% Similarity=0.016 Sum_probs=131.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---------ChhHHHHHHHHHHHcCC-----------------hHHHHHH
Q 046775 434 TFAGNSLVNMYAKCGSIDDADRAFSEIPDR---------GIVSWSAMIGGLAQHGR-----------------GKEALQM 487 (771)
Q Consensus 434 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~l 487 (771)
..++..+...|...|++++|...|++.... ...+|..+...|...|+ +++|++.
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 345556666666666766666666654311 12456666777777777 7777777
Q ss_pred HHHHHHC----CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC----cchHHHHHHHHhhcCCHHHHHHH
Q 046775 488 FGQMLED----GVLPNH-ITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM----QEHYACMIDILGRAGKFQEAMEL 558 (771)
Q Consensus 488 ~~~m~~~----g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~----~~~y~~lv~~l~r~g~~~eA~~~ 558 (771)
+++..+. +-.|.. .++..+...+...|++++|..+|++..+...-.++ ...+..+..+|.+.|++++|.+.
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 7765541 111222 35666677777788888888888776644211111 22677778888888888888887
Q ss_pred HHhCC-C---CCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------chhHHHHHHHHHhcCCchhHHHH
Q 046775 559 VDTMP-F---QAN----ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEK------SSTHVLLSNIYASAGMWDNVAKV 624 (771)
Q Consensus 559 ~~~m~-~---~p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~------~~~~~~l~~~y~~~g~~~~a~~~ 624 (771)
+++.- . .++ ..+|..+...+...|+.+.|...+++++++.|+. ...|..++.+|...|++++|.+.
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 365 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKY 365 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 77651 1 111 3467777778888889999988888888875433 34788899999999999999888
Q ss_pred HHHHHh
Q 046775 625 RRFMKD 630 (771)
Q Consensus 625 ~~~m~~ 630 (771)
++...+
T Consensus 366 ~~~al~ 371 (411)
T 4a1s_A 366 AEQHLQ 371 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877654
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.33 E-value=4.1e-11 Score=124.61 Aligned_cols=258 Identities=16% Similarity=0.082 Sum_probs=167.1
Q ss_pred HHHHHcCChHHHHHHHHHHhcCCCCCC-----HhhHHHHHHHhhcccchHHHHHHHHHHHHh----CC-CCchhHHHHHH
Q 046775 372 TAYAQFGLGEEALKLYLEMQDREINPD-----SFVCSSLLNACANLSAYEQGKQVHVHIIKF----GF-MSDTFAGNSLV 441 (771)
Q Consensus 372 ~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g~-~~~~~~~~~Li 441 (771)
..+.+.|++++|+..|+++.+. .|+ ...+..+...+...|+++.|...+..+.+. +. +....++..+.
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 3444455555555555555443 122 123344444455555555555555443321 11 12244566677
Q ss_pred HHHHhcCCHHHHHHHHhhCC-----CCC----hhHHHHHHHHHHHcCC--------------------hHHHHHHHHHHH
Q 046775 442 NMYAKCGSIDDADRAFSEIP-----DRG----IVSWSAMIGGLAQHGR--------------------GKEALQMFGQML 492 (771)
Q Consensus 442 ~~y~k~g~~~~A~~~f~~~~-----~~~----~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m~ 492 (771)
..|...|++++|...|++.. ..+ ..+|..+...|...|+ +++|++.+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 77777777777777776643 122 2367777777778888 788888877765
Q ss_pred HC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC----cchHHHHHHHHhhcCCHHHHHHHHHhCC
Q 046775 493 ED----GVLPN-HITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM----QEHYACMIDILGRAGKFQEAMELVDTMP 563 (771)
Q Consensus 493 ~~----g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~----~~~y~~lv~~l~r~g~~~eA~~~~~~m~ 563 (771)
.. +..|. ..++..+...+...|++++|..++++..+...-.++ ...+..+...+.+.|++++|.+.+++.-
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 42 11222 235667777788888888888888877644221122 2367788888889999999988887651
Q ss_pred ----CCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------chhHHHHHHHHHhcCCchhHHHHHHHHH
Q 046775 564 ----FQAN----ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEK------SSTHVLLSNIYASAGMWDNVAKVRRFMK 629 (771)
Q Consensus 564 ----~~p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~------~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 629 (771)
..++ ..++..+...+...|+.+.|...+++++++.|.. ...+..++.+|...|++++|.+.++...
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 1122 3467777788889999999999999998876543 4478899999999999999999988876
Q ss_pred hC
Q 046775 630 DN 631 (771)
Q Consensus 630 ~~ 631 (771)
+.
T Consensus 331 ~~ 332 (338)
T 3ro2_A 331 EI 332 (338)
T ss_dssp HC
T ss_pred HH
Confidence 54
No 62
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.32 E-value=6.5e-09 Score=117.40 Aligned_cols=417 Identities=9% Similarity=0.019 Sum_probs=262.2
Q ss_pred CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhcCCc---HHHHHHHHHHHHHccC-CCChhHH
Q 046775 160 PDIVSWNAVIAGCVLHEHNDWALKLFQQMKSSEINPNMFTYTSALKACAGMEL---KELGRQLHCSLIKMEI-KSDPIVG 235 (771)
Q Consensus 160 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~---~~~a~~l~~~~~~~g~-~~~~~~~ 235 (771)
.|..+|..++..+.+.+.++.+..+|+++... .+.....|..-+..-.+.++ .+.+.++|+..+.... .|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 46778888888888888888888888888765 33344455566666666677 8888888888877652 3566677
Q ss_pred HHHHHhhhcCCCh--------HHHHHHhhhCC------CC-CeehHHHHHHHHHh---------CCChhHHHHHHHHHHH
Q 046775 236 VGLVDMYAKCGSM--------DEARMIFHLMP------EK-NLIAWNIVISGHLQ---------NGGDMEAASLFPWMYR 291 (771)
Q Consensus 236 ~~Li~~y~~~g~~--------~~A~~~f~~m~------~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~ 291 (771)
...+....+.++. +..+++|+... .+ +...|...+.-... +++.+.+..+|++.+.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 7666554444433 22335665421 12 23456666654332 2234556666666653
Q ss_pred CCCCCCHhhHHHHHHHHhccCChhHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcCCHHHHHHHHHh-------cCC---
Q 046775 292 EGVGFDQTTLSTVLKSVASFQAIGVCKQVHALSVKTAFESDDYIVNSLIDAYGKCGHVEDAVKIFKE-------SSA--- 361 (771)
Q Consensus 292 ~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~-------~~~--- 361 (771)
.....-..+|.....-.... +...++.++.. ....++.|...+.+ +..
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~-~~~~a~~~~~e---------------------~~~~y~~Ar~~~~e~~~~~~~l~r~~p 280 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDV-NQLTARRHIGE---------------------LSAQYMNARSLYQDWLNITKGLKRNLP 280 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHH-CTTTHHHHHHH---------------------HHHHHHHHHHHHHHHHHHTTTCCCCCC
T ss_pred CccHHHHHHHHHHHHHHHhc-CcchHHHHHHH---------------------hhHHHHHHHHHHHHHHHHHHhHhhccc
Confidence 21111112222111111010 11111111111 01122233333322 110
Q ss_pred C-------------c------eecHHHHHHHHHHcC-------ChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccch
Q 046775 362 V-------------D------LVACTSMITAYAQFG-------LGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAY 415 (771)
Q Consensus 362 ~-------------~------~~~~~~li~~~~~~g-------~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 415 (771)
+ + ...|...|.---.++ ..+.+..+|++.... ..-+...|.....-+.+.|+.
T Consensus 281 ~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~ 359 (679)
T 4e6h_A 281 ITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTD 359 (679)
T ss_dssp SSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCC
T ss_pred cccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcH
Confidence 0 0 123555554333332 123455677777654 233556666666667778888
Q ss_pred HHHH-HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------------CC------------hhHHH
Q 046775 416 EQGK-QVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPD-------------RG------------IVSWS 469 (771)
Q Consensus 416 ~~a~-~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-------------~~------------~~~~~ 469 (771)
+.|. .+++.++... +.+..++-.++..+.+.|+++.|.++|+.+.. |. ...|.
T Consensus 360 ~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi 438 (679)
T 4e6h_A 360 STVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYC 438 (679)
T ss_dssp TTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHH
Confidence 8996 9999998754 67788888999999999999999999998763 21 23688
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHh
Q 046775 470 AMIGGLAQHGRGKEALQMFGQMLED-GVLPNHITLVSVLCACNH-AGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILG 547 (771)
Q Consensus 470 ~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~t~~~ll~a~~~-~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~ 547 (771)
..+....+.|..+.|..+|.+.++. +.. ....|......-.+ .++.+.|.++|+...+.++ -+...+...++.+.
T Consensus 439 ~y~~~erR~~~l~~AR~vf~~A~~~~~~~-~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p--~~~~~w~~y~~fe~ 515 (679)
T 4e6h_A 439 VYMNTMKRIQGLAASRKIFGKCRRLKKLV-TPDIYLENAYIEYHISKDTKTACKVLELGLKYFA--TDGEYINKYLDFLI 515 (679)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHTGGGS-CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CchHHHHHHHHHHH
Confidence 8888888899999999999999986 211 22333322222222 4569999999999998753 23455678899999
Q ss_pred hcCCHHHHHHHHHhCC-CCC----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh
Q 046775 548 RAGKFQEAMELVDTMP-FQA----NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSST 604 (771)
Q Consensus 548 r~g~~~eA~~~~~~m~-~~p----~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 604 (771)
+.|+.+.|..+|++.- ..| ...+|..++.--..+|+.+.+..+.+++.+..|+++..
T Consensus 516 ~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 516 YVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKL 577 (679)
T ss_dssp HHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHH
T ss_pred hCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHH
Confidence 9999999999999863 233 23599999999999999999999999999999987643
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.30 E-value=1.1e-11 Score=133.02 Aligned_cols=155 Identities=12% Similarity=0.004 Sum_probs=109.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC----c
Q 046775 466 VSWSAMIGGLAQHGRGKEALQMFGQMLEDG-VLPN----HITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM----Q 536 (771)
Q Consensus 466 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~----~ 536 (771)
.+|..+...|...|++++|+..|++..+.. -.++ ..++..+...+...|++++|..+++...+...-.++ .
T Consensus 188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 267 (406)
T 3sf4_A 188 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 267 (406)
T ss_dssp HHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHH
Confidence 467777777888888888888888776521 0122 125667777788888888888888876643211112 4
Q ss_pred chHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CCc
Q 046775 537 EHYACMIDILGRAGKFQEAMELVDTMP----FQAN----ASVWGALLGAARIYKNVEVGQHAAEMLFAIEP------EKS 602 (771)
Q Consensus 537 ~~y~~lv~~l~r~g~~~eA~~~~~~m~----~~p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p------~~~ 602 (771)
..+..+..++.+.|++++|.+.+++.- ..++ ..+|..+...+...|+.+.|...+++++++.+ ...
T Consensus 268 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 347 (406)
T 3sf4_A 268 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGEL 347 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 567778888888888888888887651 1122 34777788888899999999999999988733 335
Q ss_pred hhHHHHHHHHHhcCCchh
Q 046775 603 STHVLLSNIYASAGMWDN 620 (771)
Q Consensus 603 ~~~~~l~~~y~~~g~~~~ 620 (771)
.++..|+.+|...|+...
T Consensus 348 ~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 348 TARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHhhHhHH
Confidence 678889999998887643
No 64
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.28 E-value=4.7e-11 Score=136.54 Aligned_cols=161 Identities=15% Similarity=0.214 Sum_probs=131.6
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHH
Q 046775 465 IVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNH-ITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACM 542 (771)
Q Consensus 465 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~l 542 (771)
..+|+.|...|.+.|++++|++.|++.++ +.|+. .++..+..++...|++++|++.|++..+. .|+ ...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 45677777888888888888888888877 45654 47777778888888888888888877754 565 6678888
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchh
Q 046775 543 IDILGRAGKFQEAMELVDTM-PFQAN-ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDN 620 (771)
Q Consensus 543 v~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 620 (771)
..+|.+.|++++|++.+++. ...|+ ...|..|..++...|+.+.|+..++++++++|+++.+|..|+.+|...|+|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 88888888888888888776 35665 45899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 046775 621 VAKVRRFMKD 630 (771)
Q Consensus 621 a~~~~~~m~~ 630 (771)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988776644
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.27 E-value=7.7e-10 Score=114.12 Aligned_cols=219 Identities=10% Similarity=0.041 Sum_probs=160.0
Q ss_pred HHHHHHHHHHhcCCCCCCHhhHHHHHHHhh-------cccch-------HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 046775 381 EEALKLYLEMQDREINPDSFVCSSLLNACA-------NLSAY-------EQGKQVHVHIIKFGFMSDTFAGNSLVNMYAK 446 (771)
Q Consensus 381 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-------~~~~~-------~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k 446 (771)
++|+.+|++..... +-+...|......+. ..|++ ++|..+++.+++.-.+.+..++..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56667777766531 223344444444443 23554 7888888888774225566788889999999
Q ss_pred cCCHHHHHHHHhhCCC--C-Chh-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCcHHHHHH
Q 046775 447 CGSIDDADRAFSEIPD--R-GIV-SWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACN-HAGLVAEAKH 521 (771)
Q Consensus 447 ~g~~~~A~~~f~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~-~~g~~~~a~~ 521 (771)
.|++++|..+|++..+ | +.. .|..++..+.+.|+.++|..+|++..+.. +++...|........ ..|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999987653 3 233 79999999999999999999999998853 233344544433322 3699999999
Q ss_pred HHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046775 522 HFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMP----FQAN--ASVWGALLGAARIYKNVEVGQHAAEMLF 595 (771)
Q Consensus 522 ~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~----~~p~--~~~~~~ll~a~~~~~~~~~a~~~~~~~~ 595 (771)
+|+...+.. +-+...|..+++.+.+.|++++|..++++.- +.|+ ..+|..++.....+|+.+.|..++++++
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999888663 2246778888999999999999999998762 3553 4589999998899999999999999999
Q ss_pred hcCCCCch
Q 046775 596 AIEPEKSS 603 (771)
Q Consensus 596 ~l~p~~~~ 603 (771)
+..|+++.
T Consensus 269 ~~~p~~~~ 276 (308)
T 2ond_A 269 TAFREEYE 276 (308)
T ss_dssp HHTTTTTS
T ss_pred HHcccccc
Confidence 99997654
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.24 E-value=1.5e-10 Score=109.27 Aligned_cols=166 Identities=10% Similarity=0.016 Sum_probs=141.6
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 046775 432 SDTFAGNSLVNMYAKCGSIDDADRAFSEIP---DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPN-HITLVSVL 507 (771)
Q Consensus 432 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll 507 (771)
.++.+|..|...|.+.|++++|.+.|++.. +.+..+|..+...|.+.|++++|+..+++.... .|+ ...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 356788999999999999999999999875 445788999999999999999999999999884 444 45677777
Q ss_pred HHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCH
Q 046775 508 CACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAMELVDTM-PFQA-NASVWGALLGAARIYKNV 584 (771)
Q Consensus 508 ~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~ 584 (771)
..+...++++++...+....+. .|+ ...+..+..+|.+.|++++|++.+++. ...| +..+|..+..++...|+.
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCH
Confidence 8888999999999999998764 444 677888999999999999999999887 3455 456899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCc
Q 046775 585 EVGQHAAEMLFAIEPEKS 602 (771)
Q Consensus 585 ~~a~~~~~~~~~l~p~~~ 602 (771)
+.|...++++++++|+++
T Consensus 158 ~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 158 DEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHhCCccCH
Confidence 999999999999999764
No 67
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.24 E-value=1.2e-10 Score=125.57 Aligned_cols=274 Identities=12% Similarity=0.024 Sum_probs=149.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCChhHHHHHHHHHHHhcCCCchHHHhHHHHHHHh
Q 046775 266 WNIVISGHLQNGGDMEAASLFPWMYREGVGFDQTTLSTVLKSVASFQAIGVCKQVHALSVKTAFESDDYIVNSLIDAYGK 345 (771)
Q Consensus 266 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k 345 (771)
+..+...+...|++++|+..|++..+.+ |+.... -..++..+...|..
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~------------------------------~~~~~~~lg~~~~~ 98 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRT------------------------------LSAIYSQLGNAYFY 98 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHH------------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhH------------------------------HHHHHHHHHHHHHH
Confidence 3345566777888888888888777642 221100 00234445555566
Q ss_pred cCCHHHHHHHHHhcCC---------CceecHHHHHHHHHHcCChHHHHHHHHHHhcC----CCCC-CHhhHHHHHHHhhc
Q 046775 346 CGHVEDAVKIFKESSA---------VDLVACTSMITAYAQFGLGEEALKLYLEMQDR----EINP-DSFVCSSLLNACAN 411 (771)
Q Consensus 346 ~g~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~ 411 (771)
.|++++|...|++... ....+|..+...|...|++++|+..|++.... +-.| ...++..+...+..
T Consensus 99 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 99 LGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA 178 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence 6666666665544321 12345566666677777777777777665432 1011 12233344444444
Q ss_pred ccc-----------------hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC--ChhHHHHHH
Q 046775 412 LSA-----------------YEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPDR--GIVSWSAMI 472 (771)
Q Consensus 412 ~~~-----------------~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~--~~~~~~~li 472 (771)
.|+ ++.|...+....+. +.....+ ...+|..+.
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~----------------------------~~~~~~~~~~~~~~~~la 230 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL----------------------------MRDLGDRGAQGRACGNLG 230 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH----------------------------HHHHTCHHHHHHHHHHHH
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHH----------------------------HHHcCCHHHHHHHHHHHH
Confidence 455 44444333332211 0001100 123455555
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC----cchHHHHH
Q 046775 473 GGLAQHGRGKEALQMFGQMLEDGV-LPN----HITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM----QEHYACMI 543 (771)
Q Consensus 473 ~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~----~~~y~~lv 543 (771)
..|...|++++|+..|++..+..- .++ ..++..+...+...|++++|..+|++..+...-..+ ...+..+.
T Consensus 231 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 310 (411)
T 4a1s_A 231 NTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLG 310 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666666666666666666554210 011 124555666666677777777766665543211111 34566777
Q ss_pred HHHhhcCCHHHHHHHHHhCC-C---CCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 046775 544 DILGRAGKFQEAMELVDTMP-F---QAN----ASVWGALLGAARIYKNVEVGQHAAEMLFAIEP 599 (771)
Q Consensus 544 ~~l~r~g~~~eA~~~~~~m~-~---~p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p 599 (771)
.++.+.|++++|.+.+++.- . .++ ..++..+...+...|+.+.|...+++++++.+
T Consensus 311 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 311 NTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 77777777777777776651 1 111 23667777788888999999999999988876
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.24 E-value=1.5e-10 Score=120.23 Aligned_cols=275 Identities=13% Similarity=0.014 Sum_probs=137.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCChhHHHHHHHHHHHhcCCCchHHHhHHHHHHHh
Q 046775 266 WNIVISGHLQNGGDMEAASLFPWMYREGVGFDQTTLSTVLKSVASFQAIGVCKQVHALSVKTAFESDDYIVNSLIDAYGK 345 (771)
Q Consensus 266 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k 345 (771)
+......+...|++++|+..|++..+.. |+.... -..++..+...|..
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~------------------------------~~~~~~~l~~~~~~ 55 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKT------------------------------LSAIYSQLGNAYFY 55 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHH------------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHH------------------------------HHHHHHHHHHHHHH
Confidence 3444556677788888888887776642 221100 01234445555556
Q ss_pred cCCHHHHHHHHHhcCC---------CceecHHHHHHHHHHcCChHHHHHHHHHHhcCCC-CCC----HhhHHHHHHHhhc
Q 046775 346 CGHVEDAVKIFKESSA---------VDLVACTSMITAYAQFGLGEEALKLYLEMQDREI-NPD----SFVCSSLLNACAN 411 (771)
Q Consensus 346 ~g~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~ 411 (771)
.|++++|.+.|++... ....+|..+...|...|++++|+..|++..+... .++ ..++..+...+..
T Consensus 56 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 135 (338)
T 3ro2_A 56 LHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA 135 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 6666666655544221 1234456666666777777777777666543210 011 1234444444555
Q ss_pred ccc--------------------hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC--ChhHHH
Q 046775 412 LSA--------------------YEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPDR--GIVSWS 469 (771)
Q Consensus 412 ~~~--------------------~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~--~~~~~~ 469 (771)
.|+ ++.|...+....+. +.....+ ...+|.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~----------------------------~~~~~~~~~~~~~~~ 187 (338)
T 3ro2_A 136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL----------------------------VTALGDRAAQGRAFG 187 (338)
T ss_dssp HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHH----------------------------HHHHTCHHHHHHHHH
T ss_pred cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHH----------------------------HHhcCCHHHHHHHHH
Confidence 555 44444444433221 0000000 012344
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC----cchHH
Q 046775 470 AMIGGLAQHGRGKEALQMFGQMLEDGV-LPN----HITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM----QEHYA 540 (771)
Q Consensus 470 ~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~----~~~y~ 540 (771)
.+...|...|++++|++.+++..+... .++ ..++..+...+...|++++|..+++...+...-.++ ...+.
T Consensus 188 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 267 (338)
T 3ro2_A 188 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCY 267 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 444455555555555555555443100 011 114444555555556666666555554432111111 34455
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCC----CCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 046775 541 CMIDILGRAGKFQEAMELVDTMP----FQAN----ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPE 600 (771)
Q Consensus 541 ~lv~~l~r~g~~~eA~~~~~~m~----~~p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 600 (771)
.+..++.+.|++++|.+.+++.- ..++ ..+|..+...+...|+.+.|...+++++++.|+
T Consensus 268 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 268 SLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 66666666666666666665541 0111 236667777778888888888888888887663
No 69
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.21 E-value=3e-08 Score=111.94 Aligned_cols=144 Identities=6% Similarity=-0.015 Sum_probs=71.5
Q ss_pred hHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-CHHHHHHHHhhCC---CCChhHHHHHHHHHH
Q 046775 401 VCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCG-SIDDADRAFSEIP---DRGIVSWSAMIGGLA 476 (771)
Q Consensus 401 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g-~~~~A~~~f~~~~---~~~~~~~~~li~~~~ 476 (771)
.|...+....+.+.++.|+.++..+++.-......+|...+.+..++| +.+.|..+|+... ..+...|...+.-..
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~ 515 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLI 515 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 344444555555566666666666655410112223333333333433 3566666666544 233445555555555
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHh
Q 046775 477 QHGRGKEALQMFGQMLEDGVLPNH--ITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILG 547 (771)
Q Consensus 477 ~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~ 547 (771)
..|+.+.|..+|++.+.....|+. ..|...+.-=...|..+.+.++.+++.+. .|+......+++-|.
T Consensus 516 ~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~---~P~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 516 YVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK---FPEVNKLEEFTNKYK 585 (679)
T ss_dssp HHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH---STTCCHHHHHHHHTC
T ss_pred hCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCcHHHHHHHHhc
Confidence 566666666666666553211111 23444444445556666666666666654 344444444455443
No 70
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.19 E-value=7.4e-10 Score=108.55 Aligned_cols=205 Identities=10% Similarity=0.078 Sum_probs=129.7
Q ss_pred CHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHH
Q 046775 398 DSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIP---DRGIVSWSAMIGG 474 (771)
Q Consensus 398 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~ 474 (771)
|+..+......+...|++++|...+..+++...+++...+..+...|.+.|++++|...|++.. ..+...|..+...
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 4455666666677777777777777777776633555666667777777777777777777654 2234567777777
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC---cchHHHHH
Q 046775 475 LAQHGRGKEALQMFGQMLEDGVLPN-H-------ITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM---QEHYACMI 543 (771)
Q Consensus 475 ~~~~g~~~~A~~l~~~m~~~g~~pd-~-------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~---~~~y~~lv 543 (771)
|...|++++|++.|++..+ ..|+ . ..+..+...+...|++++|...|++.. .+.|+ ...|..+.
T Consensus 86 ~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHHH
Confidence 7777777777777777776 3444 2 235555566666777777777777665 33554 34555666
Q ss_pred HHHhhcCCH--HHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 046775 544 DILGRAGKF--QEAMELVDTMPFQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYAS 614 (771)
Q Consensus 544 ~~l~r~g~~--~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 614 (771)
.+|...|+. ++|..+. ..+...+..+. ....++.+.|...++++++++|+++.....|+.+...
T Consensus 161 ~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 161 VLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp HHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 666554433 2222111 11222222222 2334556999999999999999999988888877543
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.19 E-value=4.3e-11 Score=123.27 Aligned_cols=162 Identities=14% Similarity=0.125 Sum_probs=83.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhcC-------CCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHh------C-CCC
Q 046775 367 CTSMITAYAQFGLGEEALKLYLEMQDR-------EINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKF------G-FMS 432 (771)
Q Consensus 367 ~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~------g-~~~ 432 (771)
|..+...|...|++++|+.+|+++.+. ........+..+...+...|++++|...+..+++. + .+.
T Consensus 30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 109 (311)
T 3nf1_A 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPA 109 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH
Confidence 444444444445555555544444331 11112223334444444444444444444444332 1 122
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC------C
Q 046775 433 DTFAGNSLVNMYAKCGSIDDADRAFSEIPD-------R----GIVSWSAMIGGLAQHGRGKEALQMFGQMLED------G 495 (771)
Q Consensus 433 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g 495 (771)
...++..+...|...|++++|...|++..+ + ...+|..+...|...|++++|++.|+++... +
T Consensus 110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 189 (311)
T 3nf1_A 110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP 189 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 344555666666666666666666655431 1 1245666666677777777777777776653 1
Q ss_pred CCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 046775 496 VLPNH-ITLVSVLCACNHAGLVAEAKHHFESMEK 528 (771)
Q Consensus 496 ~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 528 (771)
..|+. .++..+...+...|++++|..+|+++.+
T Consensus 190 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 190 DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 13333 2455666666777777777777766654
No 72
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.18 E-value=1.1e-09 Score=112.93 Aligned_cols=211 Identities=8% Similarity=-0.001 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHH-------hcCCH-------HHHHHHHhhCCC----CChhHHHHHHHHHHH
Q 046775 416 EQGKQVHVHIIKFGFMSDTFAGNSLVNMYA-------KCGSI-------DDADRAFSEIPD----RGIVSWSAMIGGLAQ 477 (771)
Q Consensus 416 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~-------k~g~~-------~~A~~~f~~~~~----~~~~~~~~li~~~~~ 477 (771)
+.|..+++.+++.. +.++.+|..++..+. +.|++ ++|..+|++... .+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777888887764 677888888888876 35885 999999997653 346789999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHh-hcCCHH
Q 046775 478 HGRGKEALQMFGQMLEDGVLPNHI--TLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILG-RAGKFQ 553 (771)
Q Consensus 478 ~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~-r~g~~~ 553 (771)
.|++++|.++|++.++ +.|+.. .+..+...+...|++++|..+|++..+. .|. ...|...+.+.. ..|+++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS---TTCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999998 667643 7888889999999999999999998853 444 444544443322 379999
Q ss_pred HHHHHHHhCC-CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC-CchhHHHHHHHHHhcCCchhHHHHHHH
Q 046775 554 EAMELVDTMP-FQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAI---EPE-KSSTHVLLSNIYASAGMWDNVAKVRRF 627 (771)
Q Consensus 554 eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l---~p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~ 627 (771)
+|.+++++.- ..| +..+|..++......|+.+.|..+++++++. .|+ +...|..+++.+...|++++|..+.+.
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999998872 334 5679999999999999999999999999995 564 667888899999999999999999888
Q ss_pred HHhCC
Q 046775 628 MKDNK 632 (771)
Q Consensus 628 m~~~g 632 (771)
+.+..
T Consensus 267 a~~~~ 271 (308)
T 2ond_A 267 RFTAF 271 (308)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 77654
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.18 E-value=2.3e-10 Score=117.75 Aligned_cols=232 Identities=14% Similarity=0.132 Sum_probs=168.3
Q ss_pred HhhHHHHHHHhhcccchHHHHHHHHHHHHh-------CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------C-
Q 046775 399 SFVCSSLLNACANLSAYEQGKQVHVHIIKF-------GFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPD-------R- 463 (771)
Q Consensus 399 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-------g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-------~- 463 (771)
..++..+...+...|++++|..++..+.+. ..+....++..+...|...|++++|...|++... +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456778888899999999999999988774 3345667888899999999999999999987652 1
Q ss_pred ---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhhC--
Q 046775 464 ---GIVSWSAMIGGLAQHGRGKEALQMFGQMLED------GVLPNH-ITLVSVLCACNHAGLVAEAKHHFESMEKKFG-- 531 (771)
Q Consensus 464 ---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-- 531 (771)
...+|..+...|...|++++|++.|+++.+. +-.|+. ..+..+...+...|++++|..+|+++.+...
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 2467888999999999999999999999874 223443 3677888899999999999999999876421
Q ss_pred ---CCCC-cchHHHHHHHHhhcCCHHHHHHHHHhCC----------CCCCH-hHHHHH------HHHHHhcCCHHHHHHH
Q 046775 532 ---IQPM-QEHYACMIDILGRAGKFQEAMELVDTMP----------FQANA-SVWGAL------LGAARIYKNVEVGQHA 590 (771)
Q Consensus 532 ---i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~----------~~p~~-~~~~~l------l~a~~~~~~~~~a~~~ 590 (771)
..|. ...+..+..+|.+.|++++|.+.++++. ..|.. ..|..+ .......+....+...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 1222 4568889999999999999999998752 12221 233222 2233344556666777
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHh
Q 046775 591 AEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKD 630 (771)
Q Consensus 591 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 630 (771)
++++.+..|.++..+..|+.+|...|++++|.+.++...+
T Consensus 267 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 267 YKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888899999999999999999999999999887654
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.16 E-value=7.7e-10 Score=103.87 Aligned_cols=162 Identities=11% Similarity=0.011 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 046775 435 FAGNSLVNMYAKCGSIDDADRAFSEIPD---RGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACN 511 (771)
Q Consensus 435 ~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 511 (771)
..+..+...|...|++++|...|+.+.. .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 4455566666677777777777766652 234556666666666666666666666666531 223344555555555
Q ss_pred ccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 046775 512 HAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMPFQANASVWGALLGAARIYKNVEVGQHAA 591 (771)
Q Consensus 512 ~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~ 591 (771)
..|++++|.++|+++.+. . ..+..+|..+...+...|+.+.|...+
T Consensus 88 ~~~~~~~A~~~~~~~~~~---~-------------------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~ 133 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA---N-------------------------------PINFNVRFRLGVALDNLGRFDEAIDSF 133 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH---C-------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc---C-------------------------------cHhHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 555555555555555432 1 123445666666666677777777777
Q ss_pred HHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 046775 592 EMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 592 ~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
+++++..|+++..+..++.+|...|++++|.+.++...+.
T Consensus 134 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 134 KIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 7777777777777777777777777777777777666543
No 75
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.15 E-value=1.2e-09 Score=116.47 Aligned_cols=226 Identities=7% Similarity=-0.041 Sum_probs=114.4
Q ss_pred HHHHHHcCChHHHHHHHHHHhcCC-CCCC----HhhHHHHHHHhhcccchHHHHHHHHHHHHhC--C----CCchhHHHH
Q 046775 371 ITAYAQFGLGEEALKLYLEMQDRE-INPD----SFVCSSLLNACANLSAYEQGKQVHVHIIKFG--F----MSDTFAGNS 439 (771)
Q Consensus 371 i~~~~~~g~~~~A~~l~~~m~~~g-~~p~----~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g--~----~~~~~~~~~ 439 (771)
...+...|++++|+..|++....- -.|+ ..++..+...+...|+++.|...+..+.+.. . +....+++.
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 344556677777777777665420 0122 2344455555555666666666555554321 0 111235556
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCCH-HHHHH
Q 046775 440 LVNMYAKCGSIDDADRAFSEIPD-----RG----IVSWSAMIGGLAQHGRGKEALQMFGQMLED----GVLPNH-ITLVS 505 (771)
Q Consensus 440 Li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd~-~t~~~ 505 (771)
+...|...|++++|...|++..+ ++ ..+|+.+...|...|++++|++.|++..+. +..|+. .++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 66666666676666666665431 11 135666666666777777777766666551 222333 35566
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhhCCCCC---cchHHHHHHHHhhcCC---HHHHHHHHHhCCCCCCHh-HHHHHHHHH
Q 046775 506 VLCACNHAGLVAEAKHHFESMEKKFGIQPM---QEHYACMIDILGRAGK---FQEAMELVDTMPFQANAS-VWGALLGAA 578 (771)
Q Consensus 506 ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~---~~~y~~lv~~l~r~g~---~~eA~~~~~~m~~~p~~~-~~~~ll~a~ 578 (771)
+...+...|++++|..++++..+...-.++ ...+..+..++...|+ +++|..++++.+..|+.. ++..|...+
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 666666666666666666665432111111 2223445555555555 555555555553322221 233333333
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 046775 579 RIYKNVEVGQHAAEMLFA 596 (771)
Q Consensus 579 ~~~~~~~~a~~~~~~~~~ 596 (771)
...|+.+.|...++++++
T Consensus 350 ~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 350 HERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 444444444444444333
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.13 E-value=2.5e-09 Score=100.27 Aligned_cols=169 Identities=14% Similarity=0.024 Sum_probs=130.6
Q ss_pred hhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHH
Q 046775 400 FVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIP---DRGIVSWSAMIGGLA 476 (771)
Q Consensus 400 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~ 476 (771)
..+..+...+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+.+. ..+...|..+...|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456667778889999999999999887654 5578889999999999999999999999865 445788999999999
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHH
Q 046775 477 QHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAM 556 (771)
Q Consensus 477 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~ 556 (771)
..|++++|++.|+++... .+.+...+..+...+...|++++|..+|+.+.+. .|+
T Consensus 88 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~--------------------- 142 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL---RPN--------------------- 142 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT---------------------
T ss_pred HhcCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc---Ccc---------------------
Confidence 999999999999999985 2345667777778888888888888888887654 121
Q ss_pred HHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh
Q 046775 557 ELVDTMPFQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSST 604 (771)
Q Consensus 557 ~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 604 (771)
+..+|..+...+...|+.+.|...++++++++|+++..
T Consensus 143 ----------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 143 ----------EGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180 (186)
T ss_dssp ----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGG
T ss_pred ----------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhh
Confidence 23345555556666666666666667777777766543
No 77
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.12 E-value=6.6e-10 Score=121.95 Aligned_cols=177 Identities=9% Similarity=-0.007 Sum_probs=154.5
Q ss_pred HHHHHHHHhhCC---CCChhHHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHH
Q 046775 450 IDDADRAFSEIP---DRGIVSWSAMIGGLAQHGRG-KEALQMFGQMLEDGVLPN-HITLVSVLCACNHAGLVAEAKHHFE 524 (771)
Q Consensus 450 ~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~ 524 (771)
+++|...++... ..+...|..+...|...|++ ++|++.|++.++ ..|+ ...+..+..++...|++++|.++|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK--LEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455666665443 34578899999999999999 999999999998 4565 5689999999999999999999999
Q ss_pred HHHHhhCCCCCcchHHHHHHHHhhc---------CCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhc--------CCHH
Q 046775 525 SMEKKFGIQPMQEHYACMIDILGRA---------GKFQEAMELVDTM-PFQAN-ASVWGALLGAARIY--------KNVE 585 (771)
Q Consensus 525 ~m~~~~~i~p~~~~y~~lv~~l~r~---------g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~--------~~~~ 585 (771)
+.. .+.|+...+..+..+|.+. |++++|.+.+++. ...|+ ...|..+..++... |+.+
T Consensus 162 ~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 988 4578888899999999999 9999999999987 34554 66899999999888 9999
Q ss_pred HHHHHHHHHHhcCC---CCchhHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 046775 586 VGQHAAEMLFAIEP---EKSSTHVLLSNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 586 ~a~~~~~~~~~l~p---~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
.|...++++++++| +++..|..++.+|...|++++|.+.++...+.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999 99999999999999999999999999887654
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.11 E-value=1.4e-09 Score=106.54 Aligned_cols=187 Identities=12% Similarity=-0.052 Sum_probs=103.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC---C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHH
Q 046775 433 DTFAGNSLVNMYAKCGSIDDADRAFSEIP---D-RGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHI-TLVSVL 507 (771)
Q Consensus 433 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll 507 (771)
|+..+..+...|.+.|++++|...|+... . ++...|..+...|...|++++|++.|++..+ ..|+.. .+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 44555666666666666666666666543 2 4555555566666666666666666666666 345443 555566
Q ss_pred HHHhccCcHHHHHHHHHHHHHhhCCCCC-c-------chHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--H-hHHHHHH
Q 046775 508 CACNHAGLVAEAKHHFESMEKKFGIQPM-Q-------EHYACMIDILGRAGKFQEAMELVDTM-PFQAN--A-SVWGALL 575 (771)
Q Consensus 508 ~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~-------~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~--~-~~~~~ll 575 (771)
.++...|++++|...|++..+. .|+ . ..|..+...+.+.|++++|.+.+++. ...|+ . ..|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 6666666666666666666543 333 2 33555555556666666666666554 24454 2 2444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 046775 576 GAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 576 ~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
..+. ..+....+++..+.+.++..|.. ......|.+++|...++...+.
T Consensus 161 ~~~~-----~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 161 VLFY-----NNGADVLRKATPLASSNKEKYAS--EKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHH-----HHHHHHHHHHGGGTTTCHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHHHhcccCCHHHHHH--HHHHHHHHHHHHHHHHHHHhhc
Confidence 4432 23344445555555544433322 2333444557777777766543
No 79
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.11 E-value=9.3e-10 Score=117.39 Aligned_cols=225 Identities=10% Similarity=-0.052 Sum_probs=170.2
Q ss_pred HHHHhhcccchHHHHHHHHHHHHh----CCCC-chhHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCC-----hhHHH
Q 046775 405 LLNACANLSAYEQGKQVHVHIIKF----GFMS-DTFAGNSLVNMYAKCGSIDDADRAFSEIP-----DRG-----IVSWS 469 (771)
Q Consensus 405 ll~a~~~~~~~~~a~~i~~~~~~~----g~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~~~-----~~~-----~~~~~ 469 (771)
....+...|++++|...+..+.+. +-++ ...++..+...|...|++++|...|++.. .++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 444567889999999999998764 2111 34678889999999999999999888764 111 35788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHhccCcHHHHHHHHHHHHHhh---CCCCC-cchHH
Q 046775 470 AMIGGLAQHGRGKEALQMFGQMLEDGV-LPNH----ITLVSVLCACNHAGLVAEAKHHFESMEKKF---GIQPM-QEHYA 540 (771)
Q Consensus 470 ~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~i~p~-~~~y~ 540 (771)
.+...|...|++++|++.|++..+..- .+|. .++..+...+...|++++|..+|++..+.. +..|. ...+.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 899999999999999999999886311 1222 368888899999999999999999887632 22133 56688
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCC----C--CCCHh-HHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCchhHHHHHH
Q 046775 541 CMIDILGRAGKFQEAMELVDTMP----F--QANAS-VWGALLGAARIYKN---VEVGQHAAEMLFAIEPEKSSTHVLLSN 610 (771)
Q Consensus 541 ~lv~~l~r~g~~~eA~~~~~~m~----~--~p~~~-~~~~ll~a~~~~~~---~~~a~~~~~~~~~l~p~~~~~~~~l~~ 610 (771)
.+..++.+.|++++|.+.+++.- . .|... .+..+...+...|+ .+.|...+++. ...|.....+..|+.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 89999999999999999998762 1 22222 34555556667777 67777776666 344555668889999
Q ss_pred HHHhcCCchhHHHHHHHHHh
Q 046775 611 IYASAGMWDNVAKVRRFMKD 630 (771)
Q Consensus 611 ~y~~~g~~~~a~~~~~~m~~ 630 (771)
+|...|++++|.+.++...+
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999887754
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.10 E-value=2.7e-08 Score=105.42 Aligned_cols=257 Identities=12% Similarity=0.006 Sum_probs=157.3
Q ss_pred HHHcCChHHHHHHHHHHhcCCCCCCHh----hHHHHHHHhhcccchHHHHHHHHHHHHh----CCC-CchhHHHHHHHHH
Q 046775 374 YAQFGLGEEALKLYLEMQDREINPDSF----VCSSLLNACANLSAYEQGKQVHVHIIKF----GFM-SDTFAGNSLVNMY 444 (771)
Q Consensus 374 ~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g~~-~~~~~~~~Li~~y 444 (771)
+...|++++|...+++.....-..+.. .+..+...+...|+++.|...+....+. +.. ........+...|
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 103 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 103 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 334555555555555544322111111 2233333444555555555555554332 100 0122345566777
Q ss_pred HhcCCHHHHHHHHhhCC-------C---CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--C--CHHHHHHHHHH
Q 046775 445 AKCGSIDDADRAFSEIP-------D---RG-IVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVL--P--NHITLVSVLCA 509 (771)
Q Consensus 445 ~k~g~~~~A~~~f~~~~-------~---~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--d~~t~~~ll~a 509 (771)
...|++++|...|++.. . +. ...+..+...|...|++++|...+++.....-. | ...++..+...
T Consensus 104 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 183 (373)
T 1hz4_A 104 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 183 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Confidence 77788887777776543 1 11 235566777788888888888888887763211 1 12456667777
Q ss_pred HhccCcHHHHHHHHHHHHHhhCCCCCcchHH-----HHHHHHhhcCCHHHHHHHHHhCC-CCCC-----HhHHHHHHHHH
Q 046775 510 CNHAGLVAEAKHHFESMEKKFGIQPMQEHYA-----CMIDILGRAGKFQEAMELVDTMP-FQAN-----ASVWGALLGAA 578 (771)
Q Consensus 510 ~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~-----~lv~~l~r~g~~~eA~~~~~~m~-~~p~-----~~~~~~ll~a~ 578 (771)
+...|++++|..++++......-......+. ..+..+.+.|++++|...+++.. ..|. ...+..+...+
T Consensus 184 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 263 (373)
T 1hz4_A 184 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 263 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHH
Confidence 8888889998888888765422111111122 23345778899999999988873 2222 22456667778
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCC------chhHHHHHHHHHhcCCchhHHHHHHHHHh
Q 046775 579 RIYKNVEVGQHAAEMLFAIEPEK------SSTHVLLSNIYASAGMWDNVAKVRRFMKD 630 (771)
Q Consensus 579 ~~~~~~~~a~~~~~~~~~l~p~~------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 630 (771)
...|+.+.|...++++++..+.. ...+..++.+|...|++++|...++....
T Consensus 264 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 264 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88899999999999888764432 13677889999999999999988777654
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.00 E-value=1.7e-09 Score=123.61 Aligned_cols=165 Identities=16% Similarity=0.183 Sum_probs=139.6
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 046775 431 MSDTFAGNSLVNMYAKCGSIDDADRAFSEIP---DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNH-ITLVSV 506 (771)
Q Consensus 431 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~l 506 (771)
+.+...++.|...|.+.|++++|.+.|++.. ..+..+|+.+...|.+.|++++|++.|++.++ +.|+. ..+..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 4456788889999999999999999998765 34577899999999999999999999999988 56764 588889
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCC
Q 046775 507 LCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAMELVDTM-PFQAN-ASVWGALLGAARIYKN 583 (771)
Q Consensus 507 l~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~ 583 (771)
..++...|++++|++.|++..+. .|+ ...|..+..+|.+.|++++|++.+++. ...|+ ...|..|..++...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 99999999999999999988754 665 678899999999999999999999886 46675 4588889999999999
Q ss_pred HHHHHHHHHHHHhcCCC
Q 046775 584 VEVGQHAAEMLFAIEPE 600 (771)
Q Consensus 584 ~~~a~~~~~~~~~l~p~ 600 (771)
.+.|+..+++++++.|+
T Consensus 161 ~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 161 WTDYDERMKKLVSIVAD 177 (723)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChh
Confidence 99999999999887653
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.99 E-value=8e-09 Score=109.85 Aligned_cols=220 Identities=12% Similarity=0.022 Sum_probs=130.9
Q ss_pred hhcccchHHHHHHHHHHHHhC--CC---CchhHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCC-----hhHHHHHHH
Q 046775 409 CANLSAYEQGKQVHVHIIKFG--FM---SDTFAGNSLVNMYAKCGSIDDADRAFSEIP-----DRG-----IVSWSAMIG 473 (771)
Q Consensus 409 ~~~~~~~~~a~~i~~~~~~~g--~~---~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~-----~~~-----~~~~~~li~ 473 (771)
+...|+++.|...+..+.+.. .+ ....++..+...|...|+++.|...+++.. .++ ..+++.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 345566666666666655431 11 123455666777777777777666665543 111 345667777
Q ss_pred HHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhC--CCCC-cchHHHHHHH
Q 046775 474 GLAQHGRGKEALQMFGQMLED----GVLPN-HITLVSVLCACNHAGLVAEAKHHFESMEKKFG--IQPM-QEHYACMIDI 545 (771)
Q Consensus 474 ~~~~~g~~~~A~~l~~~m~~~----g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--i~p~-~~~y~~lv~~ 545 (771)
.|...|++++|++.|++..+. |-.+. ..++..+...+...|++++|..+|++..+... ..|. ...+..+..+
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT 270 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence 777777777777777776652 11111 13566667777777888888877777665211 1222 4556677777
Q ss_pred HhhcCCHHHHHHHHHhC----CC--CCCHh-HHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 046775 546 LGRAGKFQEAMELVDTM----PF--QANAS-VWGALLGAARIYKN---VEVGQHAAEMLFAIEPEKSSTHVLLSNIYASA 615 (771)
Q Consensus 546 l~r~g~~~eA~~~~~~m----~~--~p~~~-~~~~ll~a~~~~~~---~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 615 (771)
+.+.|++++|.+.+++. +. .|... .+..+...+...++ ++.|...+++. ...|.....+..|+.+|...
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~ 349 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESS 349 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHC
Confidence 77888888887777664 11 22222 33333334445556 55555555541 22334455677888888888
Q ss_pred CCchhHHHHHHHHH
Q 046775 616 GMWDNVAKVRRFMK 629 (771)
Q Consensus 616 g~~~~a~~~~~~m~ 629 (771)
|++++|.+.++...
T Consensus 350 g~~~~A~~~~~~al 363 (378)
T 3q15_A 350 CHFEQAAAFYRKVL 363 (378)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 88888888877654
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.96 E-value=1.2e-07 Score=100.57 Aligned_cols=228 Identities=9% Similarity=0.002 Sum_probs=167.1
Q ss_pred HHHHHHcCChHHHHHHHHHHhcCCC-CCC----HhhHHHHHHHhhcccchHHHHHHHHHHHHhC--C---C-CchhHHHH
Q 046775 371 ITAYAQFGLGEEALKLYLEMQDREI-NPD----SFVCSSLLNACANLSAYEQGKQVHVHIIKFG--F---M-SDTFAGNS 439 (771)
Q Consensus 371 i~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g--~---~-~~~~~~~~ 439 (771)
...+...|++++|+..|++....-. .++ ..++..+...+...|+++.|...+..+.+.. . . ....+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3445677888888888887765311 122 2356666677778888888888777765431 1 1 12456778
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCCHHHHHHH
Q 046775 440 LVNMYAKCGSIDDADRAFSEIPD-----RG----IVSWSAMIGGLAQHGRGKEALQMFGQMLED----GVLPNHITLVSV 506 (771)
Q Consensus 440 Li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd~~t~~~l 506 (771)
+...|...|++++|.+.|++..+ ++ ..+++.+...|...|++++|++.|++.... +.+....++..+
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 88899999999999988876542 22 357888899999999999999999998871 222234578888
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhhCCCCC---cchHHHHHHHHhhcCC---HHHHHHHHHhCCCCCCHh-HHHHHHHHHH
Q 046775 507 LCACNHAGLVAEAKHHFESMEKKFGIQPM---QEHYACMIDILGRAGK---FQEAMELVDTMPFQANAS-VWGALLGAAR 579 (771)
Q Consensus 507 l~a~~~~g~~~~a~~~~~~m~~~~~i~p~---~~~y~~lv~~l~r~g~---~~eA~~~~~~m~~~p~~~-~~~~ll~a~~ 579 (771)
...+...|+.++|..++++..+...-.++ ...+..+..++...|+ +++|...+++....|+.. .+..+...+.
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence 88999999999999999998865433222 3456677778888888 999999999976555544 6667778889
Q ss_pred hcCCHHHHHHHHHHHHhcC
Q 046775 580 IYKNVEVGQHAAEMLFAIE 598 (771)
Q Consensus 580 ~~~~~~~a~~~~~~~~~l~ 598 (771)
..|+.+.|...+++++++.
T Consensus 348 ~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHH
Confidence 9999999999999887753
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.96 E-value=4.8e-09 Score=105.87 Aligned_cols=221 Identities=13% Similarity=0.123 Sum_probs=156.9
Q ss_pred hcccchHHHHHHHHHHHHh-------CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------C----ChhHHHHH
Q 046775 410 ANLSAYEQGKQVHVHIIKF-------GFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPD-------R----GIVSWSAM 471 (771)
Q Consensus 410 ~~~~~~~~a~~i~~~~~~~-------g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-------~----~~~~~~~l 471 (771)
...|+++.|...+..+++. ..+....++..+...|...|++++|...|++... + ...+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456777777777666542 2234567888999999999999999999987651 1 24678899
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhh-----CCCCC-cch
Q 046775 472 IGGLAQHGRGKEALQMFGQMLED------GVLPN-HITLVSVLCACNHAGLVAEAKHHFESMEKKF-----GIQPM-QEH 538 (771)
Q Consensus 472 i~~~~~~g~~~~A~~l~~~m~~~------g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~i~p~-~~~ 538 (771)
...|...|++++|++.|++.... .-.|+ ..++..+...+...|++++|..+|++..+.. +-.|. ...
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999999874 11243 3478888889999999999999999987641 11232 567
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC----------CCCCH-hHHHHHHHHHHhcCC------HHHHHHHHHHHHhcCCCC
Q 046775 539 YACMIDILGRAGKFQEAMELVDTMP----------FQANA-SVWGALLGAARIYKN------VEVGQHAAEMLFAIEPEK 601 (771)
Q Consensus 539 y~~lv~~l~r~g~~~eA~~~~~~m~----------~~p~~-~~~~~ll~a~~~~~~------~~~a~~~~~~~~~l~p~~ 601 (771)
+..+..++.+.|++++|.+.+++.- ..|.. ..|..+.......+. ...+....+.+....|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 8889999999999999999998751 23332 355444444443332 233333333333345666
Q ss_pred chhHHHHHHHHHhcCCchhHHHHHHHHHh
Q 046775 602 SSTHVLLSNIYASAGMWDNVAKVRRFMKD 630 (771)
Q Consensus 602 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 630 (771)
+.++..|+.+|...|++++|.+.++...+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77899999999999999999999887654
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.95 E-value=1e-08 Score=104.67 Aligned_cols=184 Identities=9% Similarity=0.037 Sum_probs=116.4
Q ss_pred HHHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHH
Q 046775 443 MYAKCGSIDDADRAFSEIPD-----RG----IVSWSAMIGGLAQHGRGKEALQMFGQMLED----GVLPN-HITLVSVLC 508 (771)
Q Consensus 443 ~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd-~~t~~~ll~ 508 (771)
.|...|++++|...|.+... .+ ..+|+.+...|...|++++|+..|++.++. |-.+. ..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555666665555554321 11 346677777777777777777777776652 11001 236777777
Q ss_pred HHhcc-CcHHHHHHHHHHHHHhhCCCCC----cchHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHh--------HHHHH
Q 046775 509 ACNHA-GLVAEAKHHFESMEKKFGIQPM----QEHYACMIDILGRAGKFQEAMELVDTMP-FQANAS--------VWGAL 574 (771)
Q Consensus 509 a~~~~-g~~~~a~~~~~~m~~~~~i~p~----~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p~~~--------~~~~l 574 (771)
.+... |++++|+.+|++..+.+.-..+ ...|..+..+|.+.|++++|.+.+++.. ..|+.. .|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88885 8888888888887754311111 3457788888999999999999888752 233211 45666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchh-----HHHHHHHHH--hcCCchhHHHHHH
Q 046775 575 LGAARIYKNVEVGQHAAEMLFAIEPEKSST-----HVLLSNIYA--SAGMWDNVAKVRR 626 (771)
Q Consensus 575 l~a~~~~~~~~~a~~~~~~~~~l~p~~~~~-----~~~l~~~y~--~~g~~~~a~~~~~ 626 (771)
...+...|+.+.|...++++++++|+.... +..|...|. ..+++++|.+.++
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~ 264 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFD 264 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Confidence 667788899999999999999999976553 334555554 4567778777664
No 86
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.93 E-value=4.4e-07 Score=95.99 Aligned_cols=255 Identities=10% Similarity=-0.020 Sum_probs=122.6
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHh----hHHHHHHHHhccCChhHHHHHHHHHHHhcCC-Cc----hHHHhHHHHHH
Q 046775 273 HLQNGGDMEAASLFPWMYREGVGFDQT----TLSTVLKSVASFQAIGVCKQVHALSVKTAFE-SD----DYIVNSLIDAY 343 (771)
Q Consensus 273 ~~~~g~~~~A~~~~~~m~~~g~~pd~~----t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~-~~----~~~~~~Li~~y 343 (771)
+...|++++|...+++........+.. .+..+-..+...|+++.+.+.+....+..-. .+ ..+...+...|
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 103 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 103 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 344555555555555554432111111 1222223333445555555444444332110 11 12234455666
Q ss_pred HhcCCHHHHHHHHHhcCC-------C----ceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCC--C--CHhhHHHHHHH
Q 046775 344 GKCGHVEDAVKIFKESSA-------V----DLVACTSMITAYAQFGLGEEALKLYLEMQDREIN--P--DSFVCSSLLNA 408 (771)
Q Consensus 344 ~k~g~~~~A~~~f~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--~~~t~~~ll~a 408 (771)
...|++++|...+++... + ....+..+...|...|++++|...+++....... + ...++..+...
T Consensus 104 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 183 (373)
T 1hz4_A 104 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 183 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Confidence 666777766666654321 1 1223444555666677777777777665542111 1 12334445555
Q ss_pred hhcccchHHHHHHHHHHHHhCCCCc--hh-HHH---HHHHHHHhcCCHHHHHHHHhhCCCCCh-------hHHHHHHHHH
Q 046775 409 CANLSAYEQGKQVHVHIIKFGFMSD--TF-AGN---SLVNMYAKCGSIDDADRAFSEIPDRGI-------VSWSAMIGGL 475 (771)
Q Consensus 409 ~~~~~~~~~a~~i~~~~~~~g~~~~--~~-~~~---~Li~~y~k~g~~~~A~~~f~~~~~~~~-------~~~~~li~~~ 475 (771)
+...|++++|...+.......-.++ .. ... .++..+...|++++|...++....++. ..+..+...+
T Consensus 184 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 263 (373)
T 1hz4_A 184 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 263 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHH
Confidence 5666666666666666554311111 11 111 233445666777777777666553221 1344555666
Q ss_pred HHcCChHHHHHHHHHHHHC----CCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHH
Q 046775 476 AQHGRGKEALQMFGQMLED----GVLPNHI-TLVSVLCACNHAGLVAEAKHHFESME 527 (771)
Q Consensus 476 ~~~g~~~~A~~l~~~m~~~----g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 527 (771)
...|++++|+..+++.... |..++.. ++..+..++...|+.++|...+++..
T Consensus 264 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 264 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6666666666666665432 1111221 33344445555566666665555544
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.92 E-value=1.8e-08 Score=102.88 Aligned_cols=214 Identities=11% Similarity=-0.024 Sum_probs=127.3
Q ss_pred CHHHHHHHHHhcCCCceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHH
Q 046775 348 HVEDAVKIFKESSAVDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIK 427 (771)
Q Consensus 348 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 427 (771)
++++|...|++. ...|...|++++|++.|.+...... +
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~ 69 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQK-------------------------------K 69 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHH-------------------------------H
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHH-------------------------------H
Confidence 477777776554 5667777777777777776643200 0
Q ss_pred hCCCC-chhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHHc-CChHHHHHHHHHHHHCCC
Q 046775 428 FGFMS-DTFAGNSLVNMYAKCGSIDDADRAFSEIPD-----RG----IVSWSAMIGGLAQH-GRGKEALQMFGQMLEDGV 496 (771)
Q Consensus 428 ~g~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~ 496 (771)
.|-++ ...+++.+..+|.+.|++++|...|++... .+ ..+|+.+...|... |++++|+..|++.++.
T Consensus 70 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~-- 147 (292)
T 1qqe_A 70 AGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW-- 147 (292)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--
T ss_pred hCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--
Confidence 01000 123444555555555555555555544331 11 23567777777775 8888888888877762
Q ss_pred CCC-------HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCc-----chHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 046775 497 LPN-------HITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQ-----EHYACMIDILGRAGKFQEAMELVDTM-P 563 (771)
Q Consensus 497 ~pd-------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~-----~~y~~lv~~l~r~g~~~eA~~~~~~m-~ 563 (771)
.|+ ..++..+...+...|++++|+.+|++..+...-.+.. ..|..++.++...|++++|...+++. .
T Consensus 148 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 148 YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 221 2356777778888888888888888877542111111 14566777788888888888888776 3
Q ss_pred CCCCHh------HHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCchhH
Q 046775 564 FQANAS------VWGALLGAAR--IYKNVEVGQHAAEMLFAIEPEKSSTH 605 (771)
Q Consensus 564 ~~p~~~------~~~~ll~a~~--~~~~~~~a~~~~~~~~~l~p~~~~~~ 605 (771)
+.|+.. .+..|+.++. ..++.+.|...++++.+++|.+...+
T Consensus 228 l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~ 277 (292)
T 1qqe_A 228 EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITIL 277 (292)
T ss_dssp C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHH
Confidence 445422 3444555554 34567777777777777877554433
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.92 E-value=4.1e-08 Score=98.24 Aligned_cols=203 Identities=10% Similarity=0.001 Sum_probs=135.7
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-C---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---C-HH
Q 046775 432 SDTFAGNSLVNMYAKCGSIDDADRAFSEIPD--R-G---IVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLP---N-HI 501 (771)
Q Consensus 432 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---d-~~ 501 (771)
.++..+-.+...|.+.|++++|...|+.+.. | + ...|..+...|.+.|++++|+..|++.++. .| + ..
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~ 90 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPRVPQ 90 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCchhHH
Confidence 3455566667777777788888777777652 2 2 456666777777777777777777777773 33 2 23
Q ss_pred HHHHHHHHHhc--------cCcHHHHHHHHHHHHHhhCCCCCc-chHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHH
Q 046775 502 TLVSVLCACNH--------AGLVAEAKHHFESMEKKFGIQPMQ-EHYACMIDILGRAGKFQEAMELVDTMPFQANASVWG 572 (771)
Q Consensus 502 t~~~ll~a~~~--------~g~~~~a~~~~~~m~~~~~i~p~~-~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~ 572 (771)
.+..+..++.. .|++++|...|++..+.+ |+. .....+..+....+.+. ..+.
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~~---------------~~~~ 152 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKLA---------------RKQY 152 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHHH---------------HHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHHH---------------HHHH
Confidence 45555566666 777777777777776553 432 11211111111001111 1245
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHhc----------CCchhHHHHHHHHHhCCCccCCcc
Q 046775 573 ALLGAARIYKNVEVGQHAAEMLFAIEPEK---SSTHVLLSNIYASA----------GMWDNVAKVRRFMKDNKLKKEPGM 639 (771)
Q Consensus 573 ~ll~a~~~~~~~~~a~~~~~~~~~l~p~~---~~~~~~l~~~y~~~----------g~~~~a~~~~~~m~~~g~~k~~g~ 639 (771)
.+...+...|+.+.|...++++++..|++ +.++..++.+|... |++++|.+.++...+.. |
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~----p-- 226 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF----P-- 226 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC----T--
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC----C--
Confidence 66777889999999999999999999985 45788999999977 89999999998776542 3
Q ss_pred ceEEEcCEEEEEEeCCCCccchHHHHHHHHHHHHHHHh
Q 046775 640 SWIEVKDKVYTFTVGDRSHARSKEIYAKLDEVSDLLNK 677 (771)
Q Consensus 640 s~i~~~~~~~~f~~~~~~h~~~~~i~~~l~~l~~~~~~ 677 (771)
.+|...+....+.++...+.+
T Consensus 227 -----------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 -----------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp -----------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred -----------------CChHHHHHHHHHHHHHHHHHH
Confidence 256667777778877777665
No 89
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.90 E-value=1.7e-09 Score=98.11 Aligned_cols=136 Identities=7% Similarity=-0.104 Sum_probs=82.0
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHH
Q 046775 477 QHGRGKEALQMFGQMLEDGVLPNHI-TLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQE 554 (771)
Q Consensus 477 ~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~e 554 (771)
..|+.++|++.+++... ..|+.. .+..+...|...|++++|+++|++..+. .|+ ...|..+..+|.+.|++++
T Consensus 9 ~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 9 SKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCchHH
Confidence 33444555555544433 223222 3344444555555555555555555432 333 4455555555556666666
Q ss_pred HHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHH-HHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 046775 555 AMELVDTM-PFQAN-ASVWGALLGAARIYKNVEVGQ-HAAEMLFAIEPEKSSTHVLLSNIYASAGM 617 (771)
Q Consensus 555 A~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~~~~a~-~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 617 (771)
|...+++. ...|+ ..+|..+...+...|+.+.|. ..++++++++|+++.+|.+.+.++...|+
T Consensus 84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 84 AVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 66555554 23554 457777777888888876544 45689999999999999999999988875
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.88 E-value=6.9e-08 Score=96.58 Aligned_cols=201 Identities=11% Similarity=0.075 Sum_probs=143.6
Q ss_pred CHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC----hhHH
Q 046775 398 DSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSD---TFAGNSLVNMYAKCGSIDDADRAFSEIPD--RG----IVSW 468 (771)
Q Consensus 398 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~----~~~~ 468 (771)
+...+......+...|++++|...+..+++.. +.+ ...+..+...|.+.|++++|...|+.... |+ ...|
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 45566677778889999999999999998875 333 67788899999999999999999998762 22 3467
Q ss_pred HHHHHHHHH--------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchH
Q 046775 469 SAMIGGLAQ--------HGRGKEALQMFGQMLEDGVLPNHI-TLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHY 539 (771)
Q Consensus 469 ~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y 539 (771)
..+..+|.. .|++++|+..|++.++. .|+.. .... ...+...... ....+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a--------------~~~~~~~~~~-----~~~~~ 151 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDA--------------TQKIRELRAK-----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHH--------------HHHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHH--------------HHHHHHHHHH-----HHHHH
Confidence 778888888 99999999999999984 56542 2111 1111111111 01225
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCC-CCCC----HhHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCch-
Q 046775 540 ACMIDILGRAGKFQEAMELVDTMP-FQAN----ASVWGALLGAARIY----------KNVEVGQHAAEMLFAIEPEKSS- 603 (771)
Q Consensus 540 ~~lv~~l~r~g~~~eA~~~~~~m~-~~p~----~~~~~~ll~a~~~~----------~~~~~a~~~~~~~~~l~p~~~~- 603 (771)
..+..+|.+.|++++|...+++.- ..|+ ...|..+..++... |+.+.|...++++++..|+++.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 567778888888888888887762 2333 23566666666654 8889999999999999998864
Q ss_pred --hHHHHHHHHHhcCCchh
Q 046775 604 --THVLLSNIYASAGMWDN 620 (771)
Q Consensus 604 --~~~~l~~~y~~~g~~~~ 620 (771)
++..+..++...|+.++
T Consensus 232 ~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 45566666666555444
No 91
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.85 E-value=6.9e-08 Score=97.28 Aligned_cols=199 Identities=11% Similarity=0.065 Sum_probs=120.3
Q ss_pred hhHHHHHHHhhcccchHHHHHHHHHHHHh------C-CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------C--
Q 046775 400 FVCSSLLNACANLSAYEQGKQVHVHIIKF------G-FMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPD-------R-- 463 (771)
Q Consensus 400 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~------g-~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-------~-- 463 (771)
.++..+...+...|++++|...+..+++. + .+....++..+...|...|++++|...|++... +
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34444444555555555555555544432 1 122345666677777777777777777766541 1
Q ss_pred --ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhh----
Q 046775 464 --GIVSWSAMIGGLAQHGRGKEALQMFGQMLED------GVLPNH-ITLVSVLCACNHAGLVAEAKHHFESMEKKF---- 530 (771)
Q Consensus 464 --~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---- 530 (771)
...+|..+...|...|++++|++.|+++.+. +-.|+. .++..+...+...|++++|..+|++..+..
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 1456777888888888888888888888763 113433 467778888888999999999988877531
Q ss_pred --CCCCC-cchHHHHHHHHhh------cCCHHHHHHHHHhCC-CCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 046775 531 --GIQPM-QEHYACMIDILGR------AGKFQEAMELVDTMP-FQAN-ASVWGALLGAARIYKNVEVGQHAAEMLFAIE 598 (771)
Q Consensus 531 --~i~p~-~~~y~~lv~~l~r------~g~~~eA~~~~~~m~-~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~ 598 (771)
...|. ...|..+...... ...+.++...++... ..|+ ..+|..+...+...|+.+.|...+++++++.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 12233 2333333333333 333555666666554 2343 3378888889999999999999999998753
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.84 E-value=1.2e-07 Score=92.55 Aligned_cols=181 Identities=10% Similarity=0.002 Sum_probs=117.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----HH
Q 046775 434 TFAGNSLVNMYAKCGSIDDADRAFSEIPD--RG----IVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHI----TL 503 (771)
Q Consensus 434 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~----t~ 503 (771)
...+..+...|.+.|++++|...|+.+.. |+ ...|..+..+|.+.|++++|+..|++..+. .|+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 34455566677788888888888887652 32 246777778888888888888888888873 44432 33
Q ss_pred HHHHHHHhc------------------cCcHHHHHHHHHHHHHhhCCCCCcc-hHHHHHHHHhhcCCHHHHHHHHHhCCC
Q 046775 504 VSVLCACNH------------------AGLVAEAKHHFESMEKKFGIQPMQE-HYACMIDILGRAGKFQEAMELVDTMPF 564 (771)
Q Consensus 504 ~~ll~a~~~------------------~g~~~~a~~~~~~m~~~~~i~p~~~-~y~~lv~~l~r~g~~~eA~~~~~~m~~ 564 (771)
..+..++.. .|+.++|...|+.+.+. .|+.. .+.. +.+.+.+.+...
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a----~~~l~~~~~~~~------- 147 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDA----TKRLVFLKDRLA------- 147 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHH----HHHHHHHHHHHH-------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHH----HHHHHHHHHHHH-------
Confidence 333334332 34566666666665533 23321 1111 111111100000
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 046775 565 QANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKS---STHVLLSNIYASAGMWDNVAKVRRFMKDNKLK 634 (771)
Q Consensus 565 ~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~ 634 (771)
.....+...+...|+.+.|...++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+.+
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 0112344566789999999999999999999886 56889999999999999999999999887653
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.82 E-value=1.3e-06 Score=87.68 Aligned_cols=163 Identities=10% Similarity=0.011 Sum_probs=90.8
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC-----Ccch
Q 046775 465 IVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNH-ITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQP-----MQEH 538 (771)
Q Consensus 465 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-----~~~~ 538 (771)
..++..+..++...|++++|++++++.+..|-.++. ..+...+..+.+.|+++.|.+.++.|.+. .| +...
T Consensus 100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~---~~d~~~~~d~~ 176 (310)
T 3mv2_B 100 PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA---IEDTVSGDNEM 176 (310)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CccccccchHH
Confidence 334445555556666666666666655543322232 24444555556666666666666666533 34 1222
Q ss_pred HHHHH----HHHhhcCCHHHHHHHHHhCC-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc----------CCCCch
Q 046775 539 YACMI----DILGRAGKFQEAMELVDTMP-FQANASVWGALLGAARIYKNVEVGQHAAEMLFAI----------EPEKSS 603 (771)
Q Consensus 539 y~~lv----~~l~r~g~~~eA~~~~~~m~-~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l----------~p~~~~ 603 (771)
...+. .+....+++++|..+|+++. ..|+...-..|++++...|+++.|+..++.+.++ +|+|+.
T Consensus 177 l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~ 256 (310)
T 3mv2_B 177 ILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPT 256 (310)
T ss_dssp HHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHH
Confidence 22222 22222236666666666653 2333222233344566677788888777777665 477777
Q ss_pred hHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 046775 604 THVLLSNIYASAGMWDNVAKVRRFMKDNK 632 (771)
Q Consensus 604 ~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 632 (771)
++..++.++...|+ +|.+++..+++..
T Consensus 257 ~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 257 FLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 77777777777776 7777777776653
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.79 E-value=1.4e-08 Score=116.69 Aligned_cols=151 Identities=13% Similarity=0.034 Sum_probs=74.8
Q ss_pred hcccchHHHHHHHHHHH--------HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHc
Q 046775 410 ANLSAYEQGKQVHVHII--------KFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIP---DRGIVSWSAMIGGLAQH 478 (771)
Q Consensus 410 ~~~~~~~~a~~i~~~~~--------~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~ 478 (771)
...+++++|.+.+..++ +.. +.+...+..+...|.+.|++++|...|++.. ..+...|..+...|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 44555555555555554 211 3344445555555555555555555555443 22344555555555555
Q ss_pred CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHH
Q 046775 479 GRGKEALQMFGQMLEDGVLPN-HITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAM 556 (771)
Q Consensus 479 g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~ 556 (771)
|++++|++.|++.++ +.|+ ...+..+..++...|++++ .+.|++..+. .|+ ...|..+..+|.+.|++++|.
T Consensus 481 g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHH
Confidence 555555555555555 2333 2344455555555555555 5555554432 332 344455555555555555555
Q ss_pred HHHHhCC-CCCC
Q 046775 557 ELVDTMP-FQAN 567 (771)
Q Consensus 557 ~~~~~m~-~~p~ 567 (771)
+.+++.. ..|+
T Consensus 555 ~~~~~al~l~P~ 566 (681)
T 2pzi_A 555 RTLDEVPPTSRH 566 (681)
T ss_dssp HHHHTSCTTSTT
T ss_pred HHHHhhcccCcc
Confidence 5555542 4444
No 95
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.78 E-value=6.8e-08 Score=98.21 Aligned_cols=161 Identities=11% Similarity=-0.031 Sum_probs=119.1
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHH
Q 046775 462 DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPN-HITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYA 540 (771)
Q Consensus 462 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~ 540 (771)
..+...+..+...+.+.|++++|+..|++..+ ..|+ ...+..+..++...|+.++|...+++.... .|+.....
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~ 188 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQG 188 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHH
Confidence 33445566666777777888888888888777 4454 346777777788888888888888777543 45533222
Q ss_pred HHH-HHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHhc
Q 046775 541 CMI-DILGRAGKFQEAMELVDTM-PFQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEK--SSTHVLLSNIYASA 615 (771)
Q Consensus 541 ~lv-~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~--~~~~~~l~~~y~~~ 615 (771)
... -.+.+.|+.++|.+.+++. ...| +...|..|..++...|+.+.|...++++++.+|++ +.++..|+.+|...
T Consensus 189 ~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 189 LVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 222 2355667777777777665 2455 45688899999999999999999999999999988 88999999999999
Q ss_pred CCchhHHHHHHH
Q 046775 616 GMWDNVAKVRRF 627 (771)
Q Consensus 616 g~~~~a~~~~~~ 627 (771)
|+.++|...++.
T Consensus 269 g~~~~a~~~~r~ 280 (287)
T 3qou_A 269 GTGDALASXYRR 280 (287)
T ss_dssp CTTCHHHHHHHH
T ss_pred CCCCcHHHHHHH
Confidence 999998776543
No 96
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.78 E-value=1.8e-07 Score=82.01 Aligned_cols=129 Identities=16% Similarity=0.195 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHH
Q 046775 467 SWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDIL 546 (771)
Q Consensus 467 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l 546 (771)
.|..+...|...|++++|+.+|+++.+.. +.+..++..+...+...|++++|..+|+++.+. .|+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~----------- 67 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPR----------- 67 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTT-----------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CCC-----------
Confidence 45666666677777777777777766632 223445555566666666666666666665543 121
Q ss_pred hhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHH
Q 046775 547 GRAGKFQEAMELVDTMPFQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRR 626 (771)
Q Consensus 547 ~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 626 (771)
+..+|..+...+...|+.+.|...++++++..|+++..+..++.+|...|++++|.+.++
T Consensus 68 --------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 68 --------------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp --------------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred --------------------chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 223444444444555555555555555555566556666666666666666666666655
Q ss_pred HHHh
Q 046775 627 FMKD 630 (771)
Q Consensus 627 ~m~~ 630 (771)
.+.+
T Consensus 128 ~~~~ 131 (136)
T 2fo7_A 128 KALE 131 (136)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 5543
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.77 E-value=1.4e-07 Score=108.26 Aligned_cols=164 Identities=11% Similarity=-0.022 Sum_probs=81.6
Q ss_pred HhcCCHHHHHHHHhhCC-----------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhc
Q 046775 445 AKCGSIDDADRAFSEIP-----------DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPN-HITLVSVLCACNH 512 (771)
Q Consensus 445 ~k~g~~~~A~~~f~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~ 512 (771)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|++..+ ..|+ ...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHH
Confidence 34455555555554433 22334455555555555555555555555555 2332 2344445555555
Q ss_pred cCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHH
Q 046775 513 AGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAMELVDTM-PFQAN-ASVWGALLGAARIYKNVEVGQH 589 (771)
Q Consensus 513 ~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~~~~a~~ 589 (771)
.|++++|.+.|++..+. .|+ ...|..+..+|.+.|++++ ++.+++. ...|+ ...|..+..++...|+.+.|..
T Consensus 480 ~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 55555555555555432 332 3445555555555555555 5555443 12332 3345555555555555555555
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHh
Q 046775 590 AAEMLFAIEPEKSSTHVLLSNIYAS 614 (771)
Q Consensus 590 ~~~~~~~l~p~~~~~~~~l~~~y~~ 614 (771)
.++++++++|+++.+|..++.+|..
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHHhhcccCcccHHHHHHHHHHHHc
Confidence 5555555555555555555555544
No 98
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.76 E-value=1.4e-07 Score=82.83 Aligned_cols=95 Identities=15% Similarity=0.203 Sum_probs=78.6
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 046775 538 HYACMIDILGRAGKFQEAMELVDTMP-FQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASA 615 (771)
Q Consensus 538 ~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 615 (771)
.|..++..+.+.|++++|.++++++. ..| +..+|..+...+...|+.+.|...++++++..|+++..+..++.+|...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 35566777777788888877777652 233 4567888888888899999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhCC
Q 046775 616 GMWDNVAKVRRFMKDNK 632 (771)
Q Consensus 616 g~~~~a~~~~~~m~~~g 632 (771)
|++++|.+.++.+.+..
T Consensus 83 ~~~~~A~~~~~~~~~~~ 99 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD 99 (136)
T ss_dssp TCHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhC
Confidence 99999999998887654
No 99
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.74 E-value=3.2e-08 Score=89.62 Aligned_cols=120 Identities=9% Similarity=-0.015 Sum_probs=100.0
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCC
Q 046775 507 LCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAMELVDTM-PFQAN-ASVWGALLGAARIYKN 583 (771)
Q Consensus 507 l~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~ 583 (771)
...+...|++++|+..+.... ...|+ ...+-.+..+|.+.|++++|++.+++. ...|+ ..+|..+...+...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 344566789999999998875 33554 455677899999999999999999987 35664 5689999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHH-HHHH
Q 046775 584 VEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVR-RFMK 629 (771)
Q Consensus 584 ~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~-~~m~ 629 (771)
.+.|...++++++++|+++.+|..|+.+|...|++++|.+.+ +...
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al 127 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAA 127 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887754 5443
No 100
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.71 E-value=8.2e-07 Score=89.06 Aligned_cols=241 Identities=10% Similarity=0.015 Sum_probs=155.4
Q ss_pred HhcCCHHHHHHHHHhcCCCcee-cHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHH
Q 046775 344 GKCGHVEDAVKIFKESSAVDLV-ACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVH 422 (771)
Q Consensus 344 ~k~g~~~~A~~~f~~~~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~ 422 (771)
.-.|.+..+..-...+...+.. .---+..+|...|++... ..-.|....+..+. .|...+ +...+
T Consensus 24 fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la-~~~~~~----a~~~l 89 (310)
T 3mv2_B 24 YYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYV-QFLDTK----NIEEL 89 (310)
T ss_dssp HTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHH-HHHTTT----CCHHH
T ss_pred HHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHH-HHhccc----HHHHH
Confidence 3456666666644444332221 122234667777766531 11223332322222 222222 44555
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 046775 423 VHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPD-----RGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVL 497 (771)
Q Consensus 423 ~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 497 (771)
+..+..+ +++......+...|...|++++|.+++.+... .+...+-.++..|.+.|+.+.|.+.+++|.+ ..
T Consensus 90 ~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~ 166 (310)
T 3mv2_B 90 ENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AI 166 (310)
T ss_dssp HHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HS
T ss_pred HHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cC
Confidence 5555544 44455556888889999999999999987632 2356677788899999999999999999988 57
Q ss_pred C-----CHHHHHHHHHH--HhccC--cHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCC-C---
Q 046775 498 P-----NHITLVSVLCA--CNHAG--LVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMP-F--- 564 (771)
Q Consensus 498 p-----d~~t~~~ll~a--~~~~g--~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~--- 564 (771)
| +..+...+..+ ....| +.++|..+|+++.+. .|+......+..++.+.|++++|++.++.+. .
T Consensus 167 ~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~ 243 (310)
T 3mv2_B 167 EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYS 243 (310)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 7 36666667666 33334 899999999998765 3542233334447889999999999987642 1
Q ss_pred -------CCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHH
Q 046775 565 -------QAN-ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHV 606 (771)
Q Consensus 565 -------~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~ 606 (771)
.|+ +.+...++......|+ .|.+..+++.+.+|+++....
T Consensus 244 ~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 244 VEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp TTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 254 4455566555556676 788999999999999987543
No 101
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.67 E-value=2.5e-07 Score=88.94 Aligned_cols=125 Identities=8% Similarity=-0.022 Sum_probs=95.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhh
Q 046775 471 MIGGLAQHGRGKEALQMFGQMLEDGVLPN-HITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGR 548 (771)
Q Consensus 471 li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r 548 (771)
+...|.+.|++++|+..|++.++ +.|+ ...+..+..++...|++++|...|++..+. .|+ ...|..+..+|..
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQ--KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHH
Confidence 88888999999999999999988 4565 457888888899999999999999998864 565 6678888888766
Q ss_pred cCC--HHHHHHHHHhCCCCCCHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 046775 549 AGK--FQEAMELVDTMPFQANAS--VWGALLGAARIYKNVEVGQHAAEMLFAIEPEK 601 (771)
Q Consensus 549 ~g~--~~eA~~~~~~m~~~p~~~--~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 601 (771)
.|. .+++...+++.. .|+.. .|..+..+....|+.+.|...++++++++|++
T Consensus 135 ~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 654 445666666654 44433 44445556667899999999999999999953
No 102
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.66 E-value=7.1e-06 Score=89.79 Aligned_cols=363 Identities=9% Similarity=-0.024 Sum_probs=190.4
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHHHHHhhcCCcHHHHHHHHHHHHHccCCCChhHHHHHHHhhhcCCC-hHHHHHHhh
Q 046775 178 NDWALKLFQQMKSSEINPNMFTYTSALKACAGMELKELGRQLHCSLIKMEIKSDPIVGVGLVDMYAKCGS-MDEARMIFH 256 (771)
Q Consensus 178 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~-~~~A~~~f~ 256 (771)
.+.|..+|+.+... -|. ++.+.++++|+..+.. .|++.+|...+..-.+.+. .+....+|+
T Consensus 11 i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe 72 (493)
T 2uy1_A 11 LSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYE 72 (493)
T ss_dssp -CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHH
T ss_pred hHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 66677777666542 222 7777788888777763 3567777777666655542 233444444
Q ss_pred hCC------CCCeehHHHHHHHHH----hCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHh---ccCChhHHHHHHHH
Q 046775 257 LMP------EKNLIAWNIVISGHL----QNGGDMEAASLFPWMYREGVGFDQTTLSTVLKSVA---SFQAIGVCKQVHAL 323 (771)
Q Consensus 257 ~m~------~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~---~~~~~~~a~~i~~~ 323 (771)
... ..+...|...+.-+. .+++.+.+..+|++.+.. ++.. ...+...+. ...+...+..+...
T Consensus 73 ~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~--~~~lw~~Y~~fE~~~~~~~~~~~~~~ 148 (493)
T 2uy1_A 73 FTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMGS--LSELWKDFENFELELNKITGKKIVGD 148 (493)
T ss_dssp HHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTT--HHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhhh--HHHHHHHHHHHHHHhccccHHHHHHH
Confidence 422 123455655555432 124455566666666652 1110 111111111 11111111111111
Q ss_pred HHHhcCCCchHHHhHHHHHHHhcCCHHHHHHHHHhcC----CCceecHHHHHHHHHHcCC-------hHHHHHHHHHHhc
Q 046775 324 SVKTAFESDDYIVNSLIDAYGKCGHVEDAVKIFKESS----AVDLVACTSMITAYAQFGL-------GEEALKLYLEMQD 392 (771)
Q Consensus 324 ~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~-------~~~A~~l~~~m~~ 392 (771)
+ .+.+..|+.+++... ..+...|...+.--..++. .+.+..+|+++..
T Consensus 149 -------------------~--~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~ 207 (493)
T 2uy1_A 149 -------------------T--LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILD 207 (493)
T ss_dssp -------------------H--HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred -------------------H--hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHH
Confidence 0 112223333332221 1133355554443222211 2345677777776
Q ss_pred CCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH-HHHHhhCC----------
Q 046775 393 REINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDA-DRAFSEIP---------- 461 (771)
Q Consensus 393 ~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A-~~~f~~~~---------- 461 (771)
.. +-++..+...+.-+.+.|+++.|+.+++.+++. |.+..++.. |+.....++. ..+.+...
T Consensus 208 ~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~ 280 (493)
T 2uy1_A 208 SF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKV 280 (493)
T ss_dssp HT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------
T ss_pred cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhh
Confidence 42 334556666666667778888888888888887 444444332 3222111111 11111110
Q ss_pred --CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHHHHhhCCCCCcch
Q 046775 462 --DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCA-CNHAGLVAEAKHHFESMEKKFGIQPMQEH 538 (771)
Q Consensus 462 --~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~i~p~~~~ 538 (771)
......|-..+..+.++|..+.|..+|++. .. ..++...|...... +...++.+.|+.+|+...+.++-. ...
T Consensus 281 ~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~--~~~ 356 (493)
T 2uy1_A 281 FSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDS--TLL 356 (493)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTC--HHH
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCC--HHH
Confidence 001245777777776777788888888888 32 11233344322111 112336888888888888765332 344
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046775 539 YACMIDILGRAGKFQEAMELVDTMPFQANASVWGALLGAARIYKNVEVGQHAAEMLFA 596 (771)
Q Consensus 539 y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~ 596 (771)
+...++.+.+.|+.+.|..++++.+ ....+|...+.--..+|+.+.+..++++.++
T Consensus 357 ~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 357 KEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6667788888888888888888874 2456788888777778887777776666643
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.65 E-value=4.9e-07 Score=84.21 Aligned_cols=155 Identities=9% Similarity=-0.019 Sum_probs=97.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 046775 437 GNSLVNMYAKCGSIDDADRAFSEIP---DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHA 513 (771)
Q Consensus 437 ~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 513 (771)
...+...+.+.|++++|...|++.. ..+...|..+...|...|++++|+..|++... ..|+.. +..++..+.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~-~~~~~~~~~-- 83 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL--EYQDNS-YKSLIAKLE-- 83 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG--GGCCHH-HHHHHHHHH--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh--ccCChH-HHHHHHHHH--
Confidence 3345555666677777777776665 23355666666666777777777777666655 233322 111111000
Q ss_pred CcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHHH
Q 046775 514 GLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTM-PFQAN-ASVWGALLGAARIYKNVEVGQHAA 591 (771)
Q Consensus 514 g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~ 591 (771)
+.+.+...+|.+.+++. ...|+ ...|..+...+...|+.+.|...+
T Consensus 84 --------------------------------~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~ 131 (176)
T 2r5s_A 84 --------------------------------LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELL 131 (176)
T ss_dssp --------------------------------HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --------------------------------HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 00101111233333333 13454 567888888888899999999999
Q ss_pred HHHHhcCCCC--chhHHHHHHHHHhcCCchhHHHHHHHH
Q 046775 592 EMLFAIEPEK--SSTHVLLSNIYASAGMWDNVAKVRRFM 628 (771)
Q Consensus 592 ~~~~~l~p~~--~~~~~~l~~~y~~~g~~~~a~~~~~~m 628 (771)
+++++++|+. +.++..|+.+|...|+.++|...++..
T Consensus 132 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 132 WNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 9999999865 568999999999999999998887654
No 104
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.62 E-value=1e-07 Score=86.09 Aligned_cols=102 Identities=9% Similarity=0.015 Sum_probs=87.6
Q ss_pred CCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 046775 531 GIQPM-QEHYACMIDILGRAGKFQEAMELVDTMP-FQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVL 607 (771)
Q Consensus 531 ~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~ 607 (771)
.+.|+ ...+..+...+.+.|++++|.+.+++.- ..| +...|..|..++...|+.+.|...++++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 45555 5567777888888899999988888773 556 46689999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhCC
Q 046775 608 LSNIYASAGMWDNVAKVRRFMKDNK 632 (771)
Q Consensus 608 l~~~y~~~g~~~~a~~~~~~m~~~g 632 (771)
++.+|...|++++|.+.++...+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999998876653
No 105
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.62 E-value=1.6e-06 Score=83.49 Aligned_cols=160 Identities=7% Similarity=-0.093 Sum_probs=112.7
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----cHHHHHHHHHHHHHhhCCCCCcchH
Q 046775 464 GIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAG----LVAEAKHHFESMEKKFGIQPMQEHY 539 (771)
Q Consensus 464 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g----~~~~a~~~~~~m~~~~~i~p~~~~y 539 (771)
+..++..+...|...|++++|++.|++..+.| +...+..+...+.. | +.++|.++|++..+. -+...+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHHH
Confidence 45556666666666667777777777766654 44455555555555 5 677777777776432 234556
Q ss_pred HHHHHHHhh----cCCHHHHHHHHHhCC-CCCC---HhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchhHHH
Q 046775 540 ACMIDILGR----AGKFQEAMELVDTMP-FQAN---ASVWGALLGAARI----YKNVEVGQHAAEMLFAIEPEKSSTHVL 607 (771)
Q Consensus 540 ~~lv~~l~r----~g~~~eA~~~~~~m~-~~p~---~~~~~~ll~a~~~----~~~~~~a~~~~~~~~~l~p~~~~~~~~ 607 (771)
..|..+|.. .+++++|.+++++.. ..|. +..+..|...+.. .+|.+.|...++++.++ |.++.++..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~ 167 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW 167 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 666666665 678888888887764 3342 5677777777776 77899999999999998 778889999
Q ss_pred HHHHHHhc-C-----CchhHHHHHHHHHhCC
Q 046775 608 LSNIYASA-G-----MWDNVAKVRRFMKDNK 632 (771)
Q Consensus 608 l~~~y~~~-g-----~~~~a~~~~~~m~~~g 632 (771)
|+.+|... | ++++|.+.++...+.|
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 99999764 3 8999999998887766
No 106
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.61 E-value=9.3e-07 Score=90.74 Aligned_cols=219 Identities=14% Similarity=0.046 Sum_probs=149.1
Q ss_pred cCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 046775 377 FGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRA 456 (771)
Q Consensus 377 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 456 (771)
.|++++|.+++++..+.. +.. + +...++++.|...+..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 467788888888766421 110 0 11135566666555443 4567788888888888
Q ss_pred HhhCCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHhccCcHHHHHHH
Q 046775 457 FSEIPD-----RG----IVSWSAMIGGLAQHGRGKEALQMFGQMLEDG---VLPN--HITLVSVLCACNHAGLVAEAKHH 522 (771)
Q Consensus 457 f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~pd--~~t~~~ll~a~~~~g~~~~a~~~ 522 (771)
|.+... .+ ..+|+.+...|...|++++|+..|++.++.- -.|. ..++..+...+.. |++++|+.+
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 876541 12 3578888899999999999999999876521 1122 2467778888888 999999999
Q ss_pred HHHHHHhhCCCCC----cchHHHHHHHHhhcCCHHHHHHHHHhCC-C---CCC----HhHHHHHHHHHHhcCCHHHHHHH
Q 046775 523 FESMEKKFGIQPM----QEHYACMIDILGRAGKFQEAMELVDTMP-F---QAN----ASVWGALLGAARIYKNVEVGQHA 590 (771)
Q Consensus 523 ~~~m~~~~~i~p~----~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~---~p~----~~~~~~ll~a~~~~~~~~~a~~~ 590 (771)
|++..+.+.-..+ ...+..+..+|.+.|++++|++.+++.- . .++ ...|..+...+...|+.+.|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9988755321111 4567888999999999999999998762 1 122 12555555666777999999999
Q ss_pred HHHHHhcCCCCchh-----HHHHHHHHHhcCCchhHHH
Q 046775 591 AEMLFAIEPEKSST-----HVLLSNIYASAGMWDNVAK 623 (771)
Q Consensus 591 ~~~~~~l~p~~~~~-----~~~l~~~y~~~g~~~~a~~ 623 (771)
+++++ ++|+.... ...+...| ..|+.+.+.+
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999 99976543 33445545 4566655544
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.60 E-value=5.9e-07 Score=101.08 Aligned_cols=158 Identities=13% Similarity=0.052 Sum_probs=117.6
Q ss_pred cCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHH
Q 046775 447 CGSIDDADRAFSEIPD---RGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPN-HITLVSVLCACNHAGLVAEAKHH 522 (771)
Q Consensus 447 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~ 522 (771)
.|++++|.+.|++..+ .+...|..+...|...|++++|++.|++..+ ..|+ ...+..+..++...|++++|.++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3677888888887662 3467788888888899999999999999888 4454 55788888888899999999999
Q ss_pred HHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 046775 523 FESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAMELVDTM-PFQA-NASVWGALLGAARIY---KNVEVGQHAAEMLFA 596 (771)
Q Consensus 523 ~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~---~~~~~a~~~~~~~~~ 596 (771)
|++..+. .|+ ...|..+..+|.+.|++++|.+.+++. ...| +...|..+...+... |+.+.|...++++++
T Consensus 80 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9988765 454 667888889999999999999998876 3445 456888888888888 999999999999999
Q ss_pred cCCCCchhHHHHH
Q 046775 597 IEPEKSSTHVLLS 609 (771)
Q Consensus 597 l~p~~~~~~~~l~ 609 (771)
.+|++...|..|+
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999988887776
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.60 E-value=3.7e-07 Score=102.74 Aligned_cols=149 Identities=14% Similarity=0.033 Sum_probs=114.2
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHH
Q 046775 478 HGRGKEALQMFGQMLEDGVLPN-HITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEA 555 (771)
Q Consensus 478 ~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA 555 (771)
.|+.++|++.|++..+ ..|+ ...+..+...+...|++++|.++|++..+ +.|+ ...|..+..+|.+.|++++|
T Consensus 2 ~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 2 TADGPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA---LHPGHPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TSTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 4789999999999988 4565 56788889999999999999999999874 4665 67889999999999999999
Q ss_pred HHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc---CCchhHHHHHHHHHh
Q 046775 556 MELVDTM-PFQAN-ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASA---GMWDNVAKVRRFMKD 630 (771)
Q Consensus 556 ~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~---g~~~~a~~~~~~m~~ 630 (771)
.+.+++. ...|+ ...|..+..++...|+.+.|...++++++++|+++..+..++.+|... |++++|.+.++...+
T Consensus 77 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 77 AVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9999886 34554 568999999999999999999999999999999999999999999999 888888888776654
Q ss_pred C
Q 046775 631 N 631 (771)
Q Consensus 631 ~ 631 (771)
.
T Consensus 157 ~ 157 (568)
T 2vsy_A 157 Q 157 (568)
T ss_dssp H
T ss_pred c
Confidence 3
No 109
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.60 E-value=4e-06 Score=84.89 Aligned_cols=148 Identities=14% Similarity=0.154 Sum_probs=75.6
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH--HHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCC----
Q 046775 479 GRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVA--EAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGK---- 551 (771)
Q Consensus 479 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~--~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~---- 551 (771)
+++++++++++++.+.. +-|...+..-.....+.|.++ +++++++++.+. .|. ...|+.-..++.+.|+
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCCH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccchh
Confidence 45555555555555521 223344444444444455544 555555555543 222 2233333334444444
Q ss_pred --HHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCC-HHHHHHHHHHHHhcC---CCCchhHHHHHHHHHhcCCchhHHH
Q 046775 552 --FQEAMELVDTM-PFQA-NASVWGALLGAARIYKN-VEVGQHAAEMLFAIE---PEKSSTHVLLSNIYASAGMWDNVAK 623 (771)
Q Consensus 552 --~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~-~~~a~~~~~~~~~l~---p~~~~~~~~l~~~y~~~g~~~~a~~ 623 (771)
+++++++++++ ...| |...|+-+.......|+ .+.....++++++++ |.++.++..|+.+|.+.|+.++|.+
T Consensus 200 ~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 55555555544 2233 44566666555555554 333444555555554 5566666666666666666666666
Q ss_pred HHHHHHh
Q 046775 624 VRRFMKD 630 (771)
Q Consensus 624 ~~~~m~~ 630 (771)
+.+.+.+
T Consensus 280 ~~~~l~~ 286 (306)
T 3dra_A 280 VYDLLKS 286 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666553
No 110
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.60 E-value=2.8e-07 Score=80.51 Aligned_cols=108 Identities=16% Similarity=0.132 Sum_probs=69.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHH
Q 046775 502 TLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAMELVDTM-PFQAN-ASVWGALLGAA 578 (771)
Q Consensus 502 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~ 578 (771)
.+......+.+.|++++|++.|++..+. .|+ ...|..+..+|.+.|++++|++.+++. .+.|+ ...|..+..++
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 3444555555555555555555555433 332 445555555666666666666655554 23443 44777777788
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 046775 579 RIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIY 612 (771)
Q Consensus 579 ~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 612 (771)
...|+.+.|...++++++++|+|+.++..|++++
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 8888888888888888888888888887777653
No 111
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.59 E-value=2.8e-05 Score=85.05 Aligned_cols=366 Identities=9% Similarity=0.007 Sum_probs=193.4
Q ss_pred CC-ChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCC-hhHHH
Q 046775 74 CD-FLEEAVCFFKEMVLSGIRPNEFSLSSMINACAGSGDSLLGRKIHGYSIKLGYDSDMFSANALVDMYAKVGN-LEDAV 151 (771)
Q Consensus 74 ~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~-~~~A~ 151 (771)
.| +...|..+|+.+... -|. ++.+.+.++|+..+.. .|++.+|...+..-.+.++ .+...
T Consensus 7 ~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~ 68 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLY 68 (493)
T ss_dssp -----CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTH
T ss_pred cCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHH
Confidence 44 366677777776642 222 7788888888888774 4677788877777766653 34455
Q ss_pred HHHccCC------CCCcccHHHHHHHHH----hCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhc---CCcHHHHHH
Q 046775 152 AVFKDIE------HPDIVSWNAVIAGCV----LHEHNDWALKLFQQMKSSEINPNMFTYTSALKACAG---MELKELGRQ 218 (771)
Q Consensus 152 ~~f~~~~------~~~~~~~n~li~~~~----~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~---~~~~~~a~~ 218 (771)
.+|+... ..+...|...+.-+. .+++.+.+.++|++.... ++.. +..+-..|.. ..+...+..
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~--~~~lw~~Y~~fE~~~~~~~~~~ 144 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMGS--LSELWKDFENFELELNKITGKK 144 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTT--HHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhhh--HHHHHHHHHHHHHHhccccHHH
Confidence 5555432 134456666665433 234566777777777763 2111 1122221111 011111111
Q ss_pred HHHHHHHccCCCChhHHHHHHHhhhcCCChHHHHHHhhhCCC----CCeehHHHHHHHHHhCCC-------hhHHHHHHH
Q 046775 219 LHCSLIKMEIKSDPIVGVGLVDMYAKCGSMDEARMIFHLMPE----KNLIAWNIVISGHLQNGG-------DMEAASLFP 287 (771)
Q Consensus 219 l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~-------~~~A~~~~~ 287 (771)
+..... +....|+.+++.+.. .+...|...+.--..++. .+.+..+|+
T Consensus 145 ~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye 203 (493)
T 2uy1_A 145 IVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHN 203 (493)
T ss_dssp HHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHH
Confidence 111110 112222222222111 123345444443222211 233556777
Q ss_pred HHHHCCCCCCHhhHHHHHHHHhccCChhHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcCCHHHHH-HHHHhcC------
Q 046775 288 WMYREGVGFDQTTLSTVLKSVASFQAIGVCKQVHALSVKTAFESDDYIVNSLIDAYGKCGHVEDAV-KIFKESS------ 360 (771)
Q Consensus 288 ~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~-~~f~~~~------ 360 (771)
++.... +.+...|...+.-+...|+.+.|+.+++..++. +.+...+. .|+...+.++.. .+.+...
T Consensus 204 ~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~~~~~~~~ 276 (493)
T 2uy1_A 204 YILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKYSMGEAES 276 (493)
T ss_dssp HHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHTC------
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHHHhhccch
Confidence 766542 334555655666666677777888888777777 33333332 222221111111 1111110
Q ss_pred ------CCceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhccc-chHHHHHHHHHHHHhCCCCc
Q 046775 361 ------AVDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLS-AYEQGKQVHVHIIKFGFMSD 433 (771)
Q Consensus 361 ------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~a~~i~~~~~~~g~~~~ 433 (771)
......|-..+.-+.+.+..+.|..+|.+.... .++...|......-...+ +.+.|+.+++..++.- +.+
T Consensus 277 ~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~ 353 (493)
T 2uy1_A 277 AEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNE--GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDS 353 (493)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTS--CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTC
T ss_pred hhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCC--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCC
Confidence 011234666666666677788888888888211 122233322111111223 5888888888887764 444
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046775 434 TFAGNSLVNMYAKCGSIDDADRAFSEIPDRGIVSWSAMIGGLAQHGRGKEALQMFGQMLE 493 (771)
Q Consensus 434 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 493 (771)
+..+...++...+.|+.+.|+.+|+++. +....|...+.--..+|+.+.+..+++++..
T Consensus 354 ~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 354 TLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5566677888888888888888888884 3566787777777777888888777777764
No 112
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.58 E-value=1.7e-07 Score=84.60 Aligned_cols=101 Identities=7% Similarity=0.052 Sum_probs=84.2
Q ss_pred CCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 046775 531 GIQPM-QEHYACMIDILGRAGKFQEAMELVDTMP-FQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVL 607 (771)
Q Consensus 531 ~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~ 607 (771)
.+.|+ ...+..+...+.+.|++++|.+.+++.- ..| +...|..+..++...|+.+.|...++++++++|+++.+|..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 34443 4556667778888888888888887762 445 56688888889999999999999999999999999999999
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhC
Q 046775 608 LSNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 608 l~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
++.+|...|++++|.+.++...+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999998877554
No 113
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.57 E-value=3.9e-07 Score=79.56 Aligned_cols=100 Identities=8% Similarity=0.069 Sum_probs=88.8
Q ss_pred CCCC-cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 046775 532 IQPM-QEHYACMIDILGRAGKFQEAMELVDTM-PFQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLL 608 (771)
Q Consensus 532 i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l 608 (771)
|.|+ .+.+......|.+.|++++|++.+++. ...| +..+|..+..++...|+.+.|...++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 5665 456778899999999999999999886 3556 466899999999999999999999999999999999999999
Q ss_pred HHHHHhcCCchhHHHHHHHHHhC
Q 046775 609 SNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 609 ~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
+.+|...|++++|.+.++...+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999877653
No 114
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.53 E-value=2.6e-07 Score=93.50 Aligned_cols=191 Identities=8% Similarity=-0.063 Sum_probs=132.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 046775 433 DTFAGNSLVNMYAKCGSIDDADRAFSEIP---DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPN-HITLVSVLC 508 (771)
Q Consensus 433 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~ 508 (771)
+...+..+...|.+.|++++|...|+... ..+...|..+...|...|++++|+..+++.++ +.|+ ...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 44566777788888888888888888765 34577888888888899999999999988887 4554 457778888
Q ss_pred HHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 046775 509 ACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAMELVDTMPFQANASVWGALLGAARIYKNVEVG 587 (771)
Q Consensus 509 a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a 587 (771)
++...|++++|...|+...+. .|+ ...+...+....+.++..+... .......++..+...+ +... .|+.+.|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l~-~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRLI-AAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHHH-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHHH-HHHHHHH
Confidence 888899999999988887654 232 1112222222222222222222 2223333444444333 3333 6889999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhc-CCchhHHHHHHHHHhC
Q 046775 588 QHAAEMLFAIEPEKSSTHVLLSNIYASA-GMWDNVAKVRRFMKDN 631 (771)
Q Consensus 588 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~-g~~~~a~~~~~~m~~~ 631 (771)
...++++++++|++......+..++... +++++|.+++..+.+.
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999888888888888877 7899999999877653
No 115
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.51 E-value=1.1e-06 Score=84.47 Aligned_cols=181 Identities=12% Similarity=0.047 Sum_probs=120.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 046775 369 SMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCG 448 (771)
Q Consensus 369 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g 448 (771)
.....+.+.|++++|+..|++.... .|+........ .... .......+.+.+...|.+.|
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~-~~~~-----------------~~~~~~~~~~~lg~~~~~~g 68 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT-NVDK-----------------NSEISSKLATELALAYKKNR 68 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH-HSCT-----------------TSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh-hhcc-----------------hhhhhHHHHHHHHHHHHHCC
Confidence 3445677889999999999988763 45433211110 0000 01112334456888899999
Q ss_pred CHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCc--HHHHHHH
Q 046775 449 SIDDADRAFSEIP---DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPN-HITLVSVLCACNHAGL--VAEAKHH 522 (771)
Q Consensus 449 ~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~--~~~a~~~ 522 (771)
++++|...|++.. ..+...|..+...|...|++++|+..|++.++ +.|+ ..++..+..++...|. .+.+...
T Consensus 69 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~ 146 (208)
T 3urz_A 69 NYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKLETD 146 (208)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999998775 44578899999999999999999999999998 5565 4577777777765554 3344555
Q ss_pred HHHHHHhhCCCCCcc--hHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhHHHHHHH
Q 046775 523 FESMEKKFGIQPMQE--HYACMIDILGRAGKFQEAMELVDTM-PFQANASVWGALLG 576 (771)
Q Consensus 523 ~~~m~~~~~i~p~~~--~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~ 576 (771)
++... .|+.. .+......+...|++++|.+.+++. ...|+......|..
T Consensus 147 ~~~~~-----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 147 YKKLS-----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HC--------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHh-----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 55442 34433 3334556667789999999999886 57888765554443
No 116
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.50 E-value=3e-05 Score=78.43 Aligned_cols=227 Identities=11% Similarity=-0.009 Sum_probs=165.0
Q ss_pred CChHHHHHHHHHHhcCCCCCCHhh-HHHHHHHhhccc--chHHHHHHHHHHHHhCCCCchhHHHHHHHHH----Hhc---
Q 046775 378 GLGEEALKLYLEMQDREINPDSFV-CSSLLNACANLS--AYEQGKQVHVHIIKFGFMSDTFAGNSLVNMY----AKC--- 447 (771)
Q Consensus 378 g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~--~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y----~k~--- 447 (771)
...++|++++.+++. +.|+..| ++.--.....++ .++++....+.++... +.+..+|+.-...+ .+.
T Consensus 47 e~s~~aL~~t~~~L~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 47 EYSERALHITELGIN--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHH--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcccc
Confidence 344577777777765 3455443 333334444555 7777777777777765 44555555544444 455
Q ss_pred CCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc------H
Q 046775 448 GSIDDADRAFSEIP---DRGIVSWSAMIGGLAQHGRGK--EALQMFGQMLEDGVLPNHITLVSVLCACNHAGL------V 516 (771)
Q Consensus 448 g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~------~ 516 (771)
++++++..+++.+. .+|..+|+--.-.+.+.|.++ ++++.++++++.. .-|...+..-.....+.|. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence 78899999998876 567788988888888889888 9999999999853 3355677666666667676 8
Q ss_pred HHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHH-HHHHHHhCC-C----CCCHhHHHHHHHHHHhcCCHHHHHH
Q 046775 517 AEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQE-AMELVDTMP-F----QANASVWGALLGAARIYKNVEVGQH 589 (771)
Q Consensus 517 ~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~e-A~~~~~~m~-~----~p~~~~~~~ll~a~~~~~~~~~a~~ 589 (771)
++++++++.+... .|+ ...|.....++.+.|+..+ +.++.++.- . ..++..|..|..++...|+.+.|..
T Consensus 203 ~eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 203 DEELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 9999999998865 454 6678888888989888544 556777653 2 2356689999999999999999999
Q ss_pred HHHHHHh-cCCCCchhHHHHHHH
Q 046775 590 AAEMLFA-IEPEKSSTHVLLSNI 611 (771)
Q Consensus 590 ~~~~~~~-l~p~~~~~~~~l~~~ 611 (771)
+++.+.+ +||-....|...++.
T Consensus 280 ~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 280 VYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHHhccChHHHHHHHHHHhh
Confidence 9999997 899888877665543
No 117
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.49 E-value=2.8e-06 Score=82.66 Aligned_cols=184 Identities=9% Similarity=-0.010 Sum_probs=130.1
Q ss_pred HhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCC-h---hHHHH
Q 046775 399 SFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMS--DTFAGNSLVNMYAKCGSIDDADRAFSEIP--DRG-I---VSWSA 470 (771)
Q Consensus 399 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~--~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--~~~-~---~~~~~ 470 (771)
...+......+...|++++|...+..+++..... ....+..+...|.+.|++++|...|++.. .|+ . .+|..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3445556677888999999999999999865221 24577888999999999999999999876 233 2 24555
Q ss_pred HHHHHHH------------------cCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCcHHHHHHHHHHHHHhhC
Q 046775 471 MIGGLAQ------------------HGRGKEALQMFGQMLEDGVLPNHIT-LVSVLCACNHAGLVAEAKHHFESMEKKFG 531 (771)
Q Consensus 471 li~~~~~------------------~g~~~~A~~l~~~m~~~g~~pd~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 531 (771)
+..+|.. .|+.++|+..|+++++ ..|+... .... ...+. +...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~----~~l~~------~~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDAT----KRLVF------LKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHH----HHHHH------HHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHH----HHHHH------HHHHHH----
Confidence 5555554 5789999999999998 4576542 2111 11110 111111
Q ss_pred CCCCcchHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCH----hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 046775 532 IQPMQEHYACMIDILGRAGKFQEAMELVDTMP-FQANA----SVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSS 603 (771)
Q Consensus 532 i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p~~----~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~ 603 (771)
...-.+...|.+.|++++|...++++- ..|+. .+|..+..++...|+.+.|...++++....|++..
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 112356778889999999998888762 33432 36888888999999999999999999999987654
No 118
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.49 E-value=3.6e-06 Score=85.36 Aligned_cols=154 Identities=12% Similarity=0.063 Sum_probs=92.0
Q ss_pred hHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHH-HHHHHHHHH
Q 046775 401 VCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPD--RGIVSW-SAMIGGLAQ 477 (771)
Q Consensus 401 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~~~~~-~~li~~~~~ 477 (771)
.+..+...+...|+++.|...+..+.+.. +.+...+..|...|.+.|++++|...|+++.. |+...+ ......+..
T Consensus 119 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~ 197 (287)
T 3qou_A 119 LXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLX 197 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHh
Confidence 34444445555666666666666666554 44566667777777777777777777777663 332222 222233556
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC---cchHHHHHHHHhhcCCHH
Q 046775 478 HGRGKEALQMFGQMLEDGVLPN-HITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM---QEHYACMIDILGRAGKFQ 553 (771)
Q Consensus 478 ~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~---~~~y~~lv~~l~r~g~~~ 553 (771)
.|+.++|++.|++.... .|+ ...+..+..++...|++++|...|.++.+. .|+ ...+..++.+|...|+.+
T Consensus 198 ~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~---~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 198 QAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRX---DLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred hcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc---ccccccchHHHHHHHHHHHcCCCC
Confidence 66667777777777663 343 345666666777777777777777776654 333 334555566666666655
Q ss_pred HHHHHHH
Q 046775 554 EAMELVD 560 (771)
Q Consensus 554 eA~~~~~ 560 (771)
+|...++
T Consensus 273 ~a~~~~r 279 (287)
T 3qou_A 273 ALASXYR 279 (287)
T ss_dssp HHHHHHH
T ss_pred cHHHHHH
Confidence 5555544
No 119
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.48 E-value=2.8e-07 Score=94.64 Aligned_cols=230 Identities=12% Similarity=-0.009 Sum_probs=121.7
Q ss_pred cCChhHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcCCHHHHHHHHHhcCCCceecHHHHHHHHHHcCChHHHHHHHHHH
Q 046775 311 FQAIGVCKQVHALSVKTAFESDDYIVNSLIDAYGKCGHVEDAVKIFKESSAVDLVACTSMITAYAQFGLGEEALKLYLEM 390 (771)
Q Consensus 311 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 390 (771)
.|++++|.+++....+..-. . .+...++++.|...|.+. ...|...|++++|+..|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-------~---~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-------S---FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-------C---SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-------c---ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHH
Confidence 45667777777776654321 0 121147777777776553 55677788888888887776
Q ss_pred hcCCC---CC-C-HhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh
Q 046775 391 QDREI---NP-D-SFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPDRGI 465 (771)
Q Consensus 391 ~~~g~---~p-~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~ 465 (771)
.+... .+ . ..++..+...+...|++++|...+...++. +.+.|+... -.
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---------------~~~~g~~~~-----------~a 116 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVM---------------YVENGTPDT-----------AA 116 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH---------------HHTTTCHHH-----------HH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---------------HHHcCCHHH-----------HH
Confidence 54210 00 0 123344444444444444444444443321 001111100 02
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC----c
Q 046775 466 VSWSAMIGGLAQHGRGKEALQMFGQMLED----GVLPN-HITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM----Q 536 (771)
Q Consensus 466 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~----~ 536 (771)
.+|+.+...|.. |++++|++.|++.+.. |-.+. ..++..+...+...|++++|+.+|++..+.+.-.+. .
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 195 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCY 195 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHH
Confidence 345566666666 7777777777766552 10000 235666667777777777777777776653211111 2
Q ss_pred chHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH------hHHHHHHHHHHhcCCHHHHHH
Q 046775 537 EHYACMIDILGRAGKFQEAMELVDTMPFQANA------SVWGALLGAARIYKNVEVGQH 589 (771)
Q Consensus 537 ~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~------~~~~~ll~a~~~~~~~~~a~~ 589 (771)
..+..++.++...|++++|...+++.-..|+. ..+..++.++ ..++.+....
T Consensus 196 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 196 KKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 24555566666778888888777764334421 1334444444 4566655444
No 120
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.48 E-value=1.1e-06 Score=78.53 Aligned_cols=96 Identities=10% Similarity=-0.004 Sum_probs=80.0
Q ss_pred cchHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 046775 536 QEHYACMIDILGRAGKFQEAMELVDTMP-FQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYA 613 (771)
Q Consensus 536 ~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 613 (771)
...+..+...+.+.|++++|.+.+++.. ..| +...|..+..++...|+.+.|...++++++++|+++..|..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 3445556677778888888888887762 445 55688888888999999999999999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHhC
Q 046775 614 SAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 614 ~~g~~~~a~~~~~~m~~~ 631 (771)
..|++++|.+.++...+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999998877654
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.47 E-value=2e-06 Score=82.69 Aligned_cols=122 Identities=8% Similarity=-0.055 Sum_probs=84.2
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhcCC
Q 046775 506 VLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMP-FQA-NASVWGALLGAARIYKN 583 (771)
Q Consensus 506 ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~~~ 583 (771)
+...+...|++++|...|++. +.|+...|..+...+.+.|++++|.+.+++.- ..| +..+|..+..++...|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc
Confidence 333444555555555555443 23444555555555555666666655555441 233 34577777777888888
Q ss_pred HHHHHHHHHHHHhcCCCCc----------------hhHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 046775 584 VEVGQHAAEMLFAIEPEKS----------------STHVLLSNIYASAGMWDNVAKVRRFMKDNK 632 (771)
Q Consensus 584 ~~~a~~~~~~~~~l~p~~~----------------~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 632 (771)
.+.|...+++++++.|++. ..+..++.+|...|++++|.+.++...+..
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8888888888888888777 899999999999999999999999887654
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.44 E-value=5.3e-06 Score=79.58 Aligned_cols=146 Identities=10% Similarity=-0.068 Sum_probs=106.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcH
Q 046775 437 GNSLVNMYAKCGSIDDADRAFSEIPDRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLV 516 (771)
Q Consensus 437 ~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~ 516 (771)
+..+...|.+.|++++|...|++...++...|..+...|...|++++|++.|++..... +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 45567778888999999999988887788888888888899999999999998888742 33455777788888888888
Q ss_pred HHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046775 517 AEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMPFQANA-SVWGALLGAARIYKNVEVGQHAAEMLF 595 (771)
Q Consensus 517 ~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~-~~~~~ll~a~~~~~~~~~a~~~~~~~~ 595 (771)
++|...|++..+. .|+..... +...| +...|+. .+|..+..++...|+.+.|...+++++
T Consensus 88 ~~A~~~~~~al~~---~~~~~~~~-----~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 88 DLAIKDLKEALIQ---LRGNQLID-----YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHT---TTTCSEEE-----CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCccHHH-----HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 8888888887754 23211000 00000 1233433 477778888888899999999999999
Q ss_pred hcCCCCc
Q 046775 596 AIEPEKS 602 (771)
Q Consensus 596 ~l~p~~~ 602 (771)
+++|++.
T Consensus 149 ~~~p~~~ 155 (213)
T 1hh8_A 149 SMKSEPR 155 (213)
T ss_dssp TTCCSGG
T ss_pred HcCcccc
Confidence 9999764
No 123
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.43 E-value=4.2e-06 Score=85.15 Aligned_cols=162 Identities=8% Similarity=-0.075 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC----cc
Q 046775 467 SWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNH-----ITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM----QE 537 (771)
Q Consensus 467 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~----~~ 537 (771)
.+...+..+...|++++|++.+++..+..-..+. ..+..+...+...|++++|..+|++..+...-..+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444566677777777777777777664211111 12233444556667777887777776533111111 33
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC-----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------Cc
Q 046775 538 HYACMIDILGRAGKFQEAMELVDTMP----FQAN-----ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPE------KS 602 (771)
Q Consensus 538 ~y~~lv~~l~r~g~~~eA~~~~~~m~----~~p~-----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~------~~ 602 (771)
.|..+...|...|++++|.+.+++.. ..|+ ..++..+...+...|+.+.|...+++++++.++ -+
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 66777777888888888777776541 1222 147777888888899999999999998887542 15
Q ss_pred hhHHHHHHHHHhcCCchhH-HHHHHHH
Q 046775 603 STHVLLSNIYASAGMWDNV-AKVRRFM 628 (771)
Q Consensus 603 ~~~~~l~~~y~~~g~~~~a-~~~~~~m 628 (771)
..|..++.+|...|++++| ...++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 6788999999999999999 7655544
No 124
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.43 E-value=3.4e-06 Score=78.45 Aligned_cols=153 Identities=13% Similarity=0.042 Sum_probs=100.8
Q ss_pred HhHHHHHHHhcCCHHHHHHHHHhcCC---CceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHh--h
Q 046775 336 VNSLIDAYGKCGHVEDAVKIFKESSA---VDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNAC--A 410 (771)
Q Consensus 336 ~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~--~ 410 (771)
...+...+.+.|++++|...|++... .+...|..+...|.+.|++++|+..|++.... .|+... ..+...+ .
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~-~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSY-KSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHH-HHHHHHHHHH
Confidence 44566778899999999999998774 46678889999999999999999999988764 344322 2222111 1
Q ss_pred cccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC---hhHHHHHHHHHHHcCChHHHH
Q 046775 411 NLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPD--RG---IVSWSAMIGGLAQHGRGKEAL 485 (771)
Q Consensus 411 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~---~~~~~~li~~~~~~g~~~~A~ 485 (771)
..+....+...+..+++.. +.+...+..+...|.+.|++++|...|+++.+ |+ ...|..+...|...|+.++|+
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 1122233456666666554 44566666677777777777777777766542 21 335666666677777777777
Q ss_pred HHHHHHH
Q 046775 486 QMFGQML 492 (771)
Q Consensus 486 ~l~~~m~ 492 (771)
..|++.+
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 125
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.42 E-value=3.6e-06 Score=72.42 Aligned_cols=112 Identities=16% Similarity=0.156 Sum_probs=69.2
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHhHHHHHHHHHHh
Q 046775 503 LVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMP-FQA-NASVWGALLGAARI 580 (771)
Q Consensus 503 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~ 580 (771)
+..+...+...|++++|.++|+++.+.. +.+...+..++..+.+.|++++|..+++++. ..| +..+|..+...+..
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 3333444444444444444444443321 1123344445555555555555555555441 122 45577778888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 046775 581 YKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAG 616 (771)
Q Consensus 581 ~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 616 (771)
.|+.+.|...++++++++|+++..+..++.++...|
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 90 QGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 899999999999999999999999999988887654
No 126
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.40 E-value=2.2e-05 Score=79.76 Aligned_cols=159 Identities=9% Similarity=-0.065 Sum_probs=109.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC----cchHHH
Q 046775 471 MIGGLAQHGRGKEALQMFGQMLEDG-VLPNHI----TLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM----QEHYAC 541 (771)
Q Consensus 471 li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~----~~~y~~ 541 (771)
.+..+...|++++|+.++++..... ..|+.. .+..+...+...|++++|+.+|+...+...-.++ ...|..
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566777788888888887777632 112211 2224555566667788888888877653211222 225777
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC-------C-CCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------chhHH
Q 046775 542 MIDILGRAGKFQEAMELVDTMP-------F-QAN-ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEK------SSTHV 606 (771)
Q Consensus 542 lv~~l~r~g~~~eA~~~~~~m~-------~-~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~------~~~~~ 606 (771)
+...|.+.|++++|.+.++++- . .|. ..+|..+...+...|+.+.|...+++++++.|+. +..|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 7788888888888877776652 1 122 2377888888999999999999999999876543 66889
Q ss_pred HHHHHHHhcCC-chhHHHHHHHHH
Q 046775 607 LLSNIYASAGM-WDNVAKVRRFMK 629 (771)
Q Consensus 607 ~l~~~y~~~g~-~~~a~~~~~~m~ 629 (771)
.++.+|...|+ +++|.+.++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999995 599988877654
No 127
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.39 E-value=6.6e-07 Score=88.55 Aligned_cols=136 Identities=15% Similarity=0.049 Sum_probs=87.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC--cchHHHHHHHHh
Q 046775 470 AMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM--QEHYACMIDILG 547 (771)
Q Consensus 470 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~--~~~y~~lv~~l~ 547 (771)
.....+...|++++|.++|+.+... .|+......+...+.+.|++++|+.+|+...+. . .|. ...+..+..++.
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHHH
Confidence 3455566667777777777666553 355544444444666677777777777644321 0 111 234566677777
Q ss_pred hcCCHHHHHHHHHhC---CCCCC-H-hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 046775 548 RAGKFQEAMELVDTM---PFQAN-A-SVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSN 610 (771)
Q Consensus 548 r~g~~~eA~~~~~~m---~~~p~-~-~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 610 (771)
+.|++++|++.+++. +..|. . ..+..+..+++..|+.+.|...++++++.+|+ +.++..|.+
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 777777777777765 22243 2 36677777888899999999999999999997 666655544
No 128
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.38 E-value=4e-06 Score=72.77 Aligned_cols=116 Identities=8% Similarity=-0.008 Sum_probs=76.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHhHHHHHHHHHH
Q 046775 502 TLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMP-FQA-NASVWGALLGAAR 579 (771)
Q Consensus 502 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~ 579 (771)
.+..+...+...|++++|..+|++..+.. +.+...+..+...+...|++++|.+.+++.. ..| +..+|..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 34444444445555555555555544321 1124445555555556666666665555541 233 3557777778888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCch
Q 046775 580 IYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWD 619 (771)
Q Consensus 580 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 619 (771)
..|+.+.|...++++++++|+++..+..++.+|...|+++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 8899999999999999999999999999999999988763
No 129
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.36 E-value=3.4e-06 Score=73.64 Aligned_cols=117 Identities=8% Similarity=-0.024 Sum_probs=79.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHH
Q 046775 465 IVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLP-NHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMI 543 (771)
Q Consensus 465 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv 543 (771)
...|..+...+...|++++|+..|++.... .| +...+..+...+...|++++|..+|++..+. .|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~--------- 81 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL---EP--------- 81 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH---CT---------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CC---------
Confidence 455666666666666677777666666653 33 3344555555555555555555555554432 11
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 046775 544 DILGRAGKFQEAMELVDTMPFQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGM 617 (771)
Q Consensus 544 ~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 617 (771)
.+..+|..+...+...|+.+.|...++++++++|++...+..++.+|...|+
T Consensus 82 ----------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 82 ----------------------TFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp ----------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred ----------------------CchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 2345677777777888888889999999999999999999999999887764
No 130
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.35 E-value=1.9e-06 Score=89.58 Aligned_cols=142 Identities=12% Similarity=0.053 Sum_probs=98.8
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHH
Q 046775 465 IVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMID 544 (771)
Q Consensus 465 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~ 544 (771)
...|..+...|.+.|++++|+..|++.+.. .|+...+ . .+++.+. ..+ ....|..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~---------~--~~~~~~~-~~~--------~~~~~~nla~ 204 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF---------S--NEEAQKA-QAL--------RLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC---------C--SHHHHHH-HHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC---------C--hHHHHHH-HHH--------HHHHHHHHHH
Confidence 456677777777777777777777777763 3432100 0 0000000 000 0245666777
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHH
Q 046775 545 ILGRAGKFQEAMELVDTM-PFQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVA 622 (771)
Q Consensus 545 ~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 622 (771)
+|.+.|++++|++.+++. ...| +..+|..+..++...|+.+.|...++++++++|+++.++..|+.+|...|+++++.
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777665 2344 45588888889999999999999999999999999999999999999999999993
Q ss_pred -HHHHHH
Q 046775 623 -KVRRFM 628 (771)
Q Consensus 623 -~~~~~m 628 (771)
+.++.|
T Consensus 285 ~~~~~~~ 291 (336)
T 1p5q_A 285 KKLYANM 291 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 455555
No 131
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.35 E-value=1.3e-05 Score=77.05 Aligned_cols=172 Identities=11% Similarity=-0.061 Sum_probs=121.3
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CChhHHHHHHHHHHHcC----ChHHHHHHHHHHH
Q 046775 418 GKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPD-RGIVSWSAMIGGLAQHG----RGKEALQMFGQML 492 (771)
Q Consensus 418 a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g----~~~~A~~l~~~m~ 492 (771)
|.+.+....+.| ++..+..|..+|...|++++|.+.|++..+ .+..++..|...|.. | +.++|++.|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444555555543 566677777788888888888888877653 346677777777776 5 7888888888887
Q ss_pred HCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHhhCCCCC---cchHHHHHHHHhh----cCCHHHHHHHHHh
Q 046775 493 EDGVLPNHITLVSVLCACNH----AGLVAEAKHHFESMEKKFGIQPM---QEHYACMIDILGR----AGKFQEAMELVDT 561 (771)
Q Consensus 493 ~~g~~pd~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~i~p~---~~~y~~lv~~l~r----~g~~~eA~~~~~~ 561 (771)
+.| +...+..+...+.. .++.++|..+|++..+ ..|. ...+..|..+|.. .+++++|.+++++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 754 55566666667766 7788888888888763 3443 5677778888877 7788888888887
Q ss_pred CC-CCCCHhHHHHHHHHHHh------cCCHHHHHHHHHHHHhcCC
Q 046775 562 MP-FQANASVWGALLGAARI------YKNVEVGQHAAEMLFAIEP 599 (771)
Q Consensus 562 m~-~~p~~~~~~~ll~a~~~------~~~~~~a~~~~~~~~~l~p 599 (771)
.. ..++...+..|...+.. ..|.+.|...++++.+..+
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 73 22445566666665543 2388999999998888754
No 132
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.34 E-value=6.5e-06 Score=75.13 Aligned_cols=120 Identities=8% Similarity=0.009 Sum_probs=75.4
Q ss_pred HHHhccCcHHHHHHHHHHHHHhhCCCC-CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCH
Q 046775 508 CACNHAGLVAEAKHHFESMEKKFGIQP-MQEHYACMIDILGRAGKFQEAMELVDTM-PFQA-NASVWGALLGAARIYKNV 584 (771)
Q Consensus 508 ~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~ 584 (771)
..+...|++++|..+|+...+. .| +...+..+..++.+.|++++|.+.+++. ...| +..+|..+...+...|+.
T Consensus 21 ~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~ 97 (166)
T 1a17_A 21 NDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 97 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccH
Confidence 3334444444444444443322 12 2334444445555555555555555443 1223 345777777888888999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHH--HHHHhcCCchhHHHHHHHHHh
Q 046775 585 EVGQHAAEMLFAIEPEKSSTHVLLS--NIYASAGMWDNVAKVRRFMKD 630 (771)
Q Consensus 585 ~~a~~~~~~~~~l~p~~~~~~~~l~--~~y~~~g~~~~a~~~~~~m~~ 630 (771)
+.|...++++++++|+++..+..+. ..+...|++++|.+..+...+
T Consensus 98 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 98 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999988885544 448888999999988776543
No 133
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.30 E-value=5.2e-06 Score=72.13 Aligned_cols=94 Identities=5% Similarity=-0.045 Sum_probs=75.3
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 046775 538 HYACMIDILGRAGKFQEAMELVDTM-PFQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASA 615 (771)
Q Consensus 538 ~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 615 (771)
.|..+...+.+.|++++|.+.+++. ...| +..+|..+..++...|+.+.|...++++++++|+++.+|..++.+|...
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 4555666677777777777777665 2344 4567888888888889999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhC
Q 046775 616 GMWDNVAKVRRFMKDN 631 (771)
Q Consensus 616 g~~~~a~~~~~~m~~~ 631 (771)
|++++|.+.++...+.
T Consensus 86 ~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 86 KEYASALETLDAARTK 101 (126)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHh
Confidence 9999999988877654
No 134
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.29 E-value=2.2e-06 Score=77.17 Aligned_cols=97 Identities=13% Similarity=0.054 Sum_probs=51.8
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHH
Q 046775 503 LVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAMELVDTM-PFQAN-ASVWGALLGAAR 579 (771)
Q Consensus 503 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~ 579 (771)
+..+..++...|++++|..+|+...+. .|+ ...|..+..+|.+.|++++|.+.+++. ...|+ +..|..+..++.
T Consensus 39 ~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 39 IYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 333444444444444444444444432 232 334444555555555555555555444 13343 346666666667
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCc
Q 046775 580 IYKNVEVGQHAAEMLFAIEPEKS 602 (771)
Q Consensus 580 ~~~~~~~a~~~~~~~~~l~p~~~ 602 (771)
..|+.+.|...+++++++.|+++
T Consensus 116 ~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCHH
Confidence 77777777777777777777543
No 135
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.28 E-value=5.3e-06 Score=77.03 Aligned_cols=118 Identities=8% Similarity=0.061 Sum_probs=71.7
Q ss_pred cCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHhHHHHHHHH-HHhcCCH--HHH
Q 046775 513 AGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMP-FQA-NASVWGALLGA-ARIYKNV--EVG 587 (771)
Q Consensus 513 ~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a-~~~~~~~--~~a 587 (771)
.|++++|...|+...+.. +.+...|..+..+|...|++++|.+.+++.- ..| +..+|..+..+ +...|+. +.|
T Consensus 23 ~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 344444444444443321 1123444455555555555555555554431 223 34466666666 5667776 888
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 046775 588 QHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDNK 632 (771)
Q Consensus 588 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 632 (771)
...++++++++|+++.++..++.+|...|++++|...++...+..
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 888888888888888888888888888888888888887776543
No 136
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.27 E-value=1.5e-06 Score=82.59 Aligned_cols=171 Identities=7% Similarity=-0.025 Sum_probs=100.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 046775 439 SLVNMYAKCGSIDDADRAFSEIPDR---GIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGL 515 (771)
Q Consensus 439 ~Li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~ 515 (771)
..+......|.+++|.+.|+..... ....|..+...+...|++++|+..|++.+.. .|+...+... .
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~ 78 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------I 78 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------H
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------h
Confidence 3444455567777777777644322 2456777888888899999999999988873 3332100000 0
Q ss_pred HHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 046775 516 VAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTM-PFQA-NASVWGALLGAARIYKNVEVGQHAAEM 593 (771)
Q Consensus 516 ~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~ 593 (771)
.+.-. ..+ ....|..+..+|.+.|++++|.+.+++. ...| +..+|..+..++...|+.+.|...+++
T Consensus 79 ~~~~~---~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 79 LLDKK---KNI--------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp HHHHH---HHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHH---HHH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 00000 000 1234555666667777777777766655 2344 455788888888899999999999999
Q ss_pred HHhcCCCCchhHHHHHHHHHhcCCchhHH-HHHHHHHh
Q 046775 594 LFAIEPEKSSTHVLLSNIYASAGMWDNVA-KVRRFMKD 630 (771)
Q Consensus 594 ~~~l~p~~~~~~~~l~~~y~~~g~~~~a~-~~~~~m~~ 630 (771)
+++++|+++..+..++.++...|+.+++. ..++.|-.
T Consensus 148 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 148 AASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999988887776 44444433
No 137
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.27 E-value=1.8e-06 Score=74.62 Aligned_cols=95 Identities=11% Similarity=-0.018 Sum_probs=83.0
Q ss_pred chHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 046775 537 EHYACMIDILGRAGKFQEAMELVDTMP-FQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYAS 614 (771)
Q Consensus 537 ~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 614 (771)
..+..+...+.+.|++++|...+++.- ..| +...|..+..++...|+.+.|+..++++++++|+++.++..|+.+|..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 456677788899999999999998873 556 456888888899999999999999999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHhC
Q 046775 615 AGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 615 ~g~~~~a~~~~~~m~~~ 631 (771)
.|++++|...++...+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999998877654
No 138
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.24 E-value=3.1e-06 Score=76.14 Aligned_cols=103 Identities=8% Similarity=-0.012 Sum_probs=66.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC-CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHH
Q 046775 502 TLVSVLCACNHAGLVAEAKHHFESMEKKFGIQP-MQEHYACMIDILGRAGKFQEAMELVDTM-PFQA-NASVWGALLGAA 578 (771)
Q Consensus 502 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~ 578 (771)
.+..+...+...|++++|...|+..... .| +...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3444555555666666666666655533 33 2445555666666666666666666654 2344 345677777788
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 046775 579 RIYKNVEVGQHAAEMLFAIEPEKSSTHVL 607 (771)
Q Consensus 579 ~~~~~~~~a~~~~~~~~~l~p~~~~~~~~ 607 (771)
...|+.+.|...++++++++|+++.....
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 88888889999999999999988766443
No 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.22 E-value=1.7e-06 Score=85.55 Aligned_cols=181 Identities=11% Similarity=0.015 Sum_probs=137.9
Q ss_pred hcCCHHHHHHHHhhCC--CC-ChhHHHHH-------HHHHHHcCChHHHHHHHHHHHHCCCCCCHH--------------
Q 046775 446 KCGSIDDADRAFSEIP--DR-GIVSWSAM-------IGGLAQHGRGKEALQMFGQMLEDGVLPNHI-------------- 501 (771)
Q Consensus 446 k~g~~~~A~~~f~~~~--~~-~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-------------- 501 (771)
..++.+.|.+.|.+.. .| ....|+.+ ...+...++..+++..+++-.. +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 4688888888888876 33 35688887 4666666666777776666554 444321
Q ss_pred --------HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH----h
Q 046775 502 --------TLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMPFQANA----S 569 (771)
Q Consensus 502 --------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~----~ 569 (771)
....+..++...|++++|.+.|+.+.. ..|+....-.+..++.+.|++++|+..++.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 223456678889999999999998864 3465335566677899999999999999876544433 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC-CchhHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 046775 570 VWGALLGAARIYKNVEVGQHAAEMLFAIE--PE-KSSTHVLLSNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 570 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~--p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
++..|..++...|+.+.|+..++++.+-. |. .+.....++.++.+.|+.++|..+++.+...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 78888889999999999999999998643 55 4557889999999999999999999988775
No 140
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.22 E-value=9.2e-06 Score=68.28 Aligned_cols=97 Identities=11% Similarity=0.078 Sum_probs=81.7
Q ss_pred cchHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CchhHHHHHHH
Q 046775 536 QEHYACMIDILGRAGKFQEAMELVDTMP-FQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPE--KSSTHVLLSNI 611 (771)
Q Consensus 536 ~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~--~~~~~~~l~~~ 611 (771)
...+..+...+.+.|++++|...+++.- ..| +..+|..+...+...|+.+.|...++++++++|+ ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 4566777788888888888888887752 334 4568888888889999999999999999999999 99999999999
Q ss_pred HHhc-CCchhHHHHHHHHHhCC
Q 046775 612 YASA-GMWDNVAKVRRFMKDNK 632 (771)
Q Consensus 612 y~~~-g~~~~a~~~~~~m~~~g 632 (771)
|... |++++|.+.++...+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 9999 99999999988776554
No 141
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.22 E-value=4.3e-06 Score=91.33 Aligned_cols=115 Identities=7% Similarity=0.013 Sum_probs=80.3
Q ss_pred HhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHH
Q 046775 510 CNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAMELVDTM-PFQAN-ASVWGALLGAARIYKNVEV 586 (771)
Q Consensus 510 ~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~~~~ 586 (771)
+...|++++|.++|++..+. .|+ ...|..+..+|.+.|++++|++.+++. ...|+ ..+|..+..++...|+.+.
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 34455555555555555533 333 455666666666666666666666654 23453 4578888888899999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHH--HHhcCCchhHHHHHHH
Q 046775 587 GQHAAEMLFAIEPEKSSTHVLLSNI--YASAGMWDNVAKVRRF 627 (771)
Q Consensus 587 a~~~~~~~~~l~p~~~~~~~~l~~~--y~~~g~~~~a~~~~~~ 627 (771)
|+..++++++++|+++..+..++.+ |...|++++|.+..+.
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999988 8899999999998763
No 142
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.21 E-value=2.6e-05 Score=73.84 Aligned_cols=93 Identities=19% Similarity=0.079 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC------C---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-C-
Q 046775 435 FAGNSLVNMYAKCGSIDDADRAFSEIPD------R---GIVSWSAMIGGLAQHGRGKEALQMFGQMLED----GVLP-N- 499 (771)
Q Consensus 435 ~~~~~Li~~y~k~g~~~~A~~~f~~~~~------~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-d- 499 (771)
.++..+...|...|++++|...|++... . ...+++.+...|...|++++|++.|++.... |-.| .
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 3344444444444444444444443321 0 1234445555555555555555555554431 1011 0
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 046775 500 HITLVSVLCACNHAGLVAEAKHHFESME 527 (771)
Q Consensus 500 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 527 (771)
...+..+...+...|++++|..++++..
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 1234444445555555555555555544
No 143
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.21 E-value=1.7e-05 Score=75.13 Aligned_cols=155 Identities=14% Similarity=0.030 Sum_probs=84.4
Q ss_pred hcCCHHHHHH---HHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCcHH
Q 046775 446 KCGSIDDADR---AFSEIPDRGIVSWSAMIGGLAQHGRGKEALQMFGQMLED----GVLPN-HITLVSVLCACNHAGLVA 517 (771)
Q Consensus 446 k~g~~~~A~~---~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd-~~t~~~ll~a~~~~g~~~ 517 (771)
..|++++|.+ .+..-+.....+|+.+...|...|++++|+..|++.... |..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4577777777 554433334567777777788888888888888777651 11222 234555666666777777
Q ss_pred HHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCC-C-HhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046775 518 EAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMPFQA-N-ASVWGALLGAARIYKNVEVGQHAAEMLF 595 (771)
Q Consensus 518 ~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p-~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~ 595 (771)
+|..+|++..+...-.|+ .| . ..++..+...+...|+.+.|...+++++
T Consensus 84 ~A~~~~~~al~~~~~~~~-----------------------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 84 AARRCFLEERELLASLPE-----------------------------DPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHSCC-----------------------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCc-----------------------------cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 777776665543211111 00 0 1133334444444455555555555554
Q ss_pred hcCC--CC----chhHHHHHHHHHhcCCchhHHHHHHHHH
Q 046775 596 AIEP--EK----SSTHVLLSNIYASAGMWDNVAKVRRFMK 629 (771)
Q Consensus 596 ~l~p--~~----~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 629 (771)
++.+ .+ ...+..++.+|...|++++|.+.++...
T Consensus 135 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 135 VYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4321 11 1234567777777777777776665543
No 144
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.20 E-value=0.00013 Score=73.99 Aligned_cols=158 Identities=9% Similarity=-0.033 Sum_probs=116.7
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCC---h-----h-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 046775 440 LVNMYAKCGSIDDADRAFSEIPDRG---I-----V-SWSAMIGGLAQHGRGKEALQMFGQMLEDGVL-PN----HITLVS 505 (771)
Q Consensus 440 Li~~y~k~g~~~~A~~~f~~~~~~~---~-----~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd----~~t~~~ 505 (771)
.+..+.+.|++++|...++...... . . .+..+...|...|++++|+..|++....... +| ..++..
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4677888999999999998765321 1 1 2334666677778999999999999984322 23 226888
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhhCCC----CC-cchHHHHHHHHhhcCCHHHHHHHHHhCC-------CCCC-HhHHH
Q 046775 506 VLCACNHAGLVAEAKHHFESMEKKFGIQ----PM-QEHYACMIDILGRAGKFQEAMELVDTMP-------FQAN-ASVWG 572 (771)
Q Consensus 506 ll~a~~~~g~~~~a~~~~~~m~~~~~i~----p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~-------~~p~-~~~~~ 572 (771)
+..++...|++++|..+|+++.+.+.-. |. ...|..+...|.+.|++++|.+.+++.- ..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8889999999999999999887533211 22 3467889999999999999999887651 1222 45788
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHhc
Q 046775 573 ALLGAARIYKN-VEVGQHAAEMLFAI 597 (771)
Q Consensus 573 ~ll~a~~~~~~-~~~a~~~~~~~~~l 597 (771)
.+..++...|+ .+.|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 88888888894 69999999988875
No 145
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.19 E-value=0.00034 Score=71.21 Aligned_cols=191 Identities=10% Similarity=0.039 Sum_probs=134.6
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC--CHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCC-hHHHHHHH
Q 046775 415 YEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCG--SIDDADRAFSEIP---DRGIVSWSAMIGGLAQHGR-GKEALQMF 488 (771)
Q Consensus 415 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g--~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~l~ 488 (771)
++.+..+...++... +.+..+|+.-...+.+.| .++++..+++.+. .+|..+|+--.-.+...|. .+++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 566777777777765 667778887777777777 4888998888876 5667788887777778888 58999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhcc--------------CcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhc----
Q 046775 489 GQMLEDGVLPNHITLVSVLCACNHA--------------GLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRA---- 549 (771)
Q Consensus 489 ~~m~~~g~~pd~~t~~~ll~a~~~~--------------g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~---- 549 (771)
+++++.. +-|...|........+. +.++++++++...... .|+ ...|+-+-.++.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCcc
Confidence 9999853 23445555554444443 5688888888888754 555 55566565666655
Q ss_pred -------CCHHHHHHHHHhC-CCCCCHhHHHHHHHHHH-----hcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 046775 550 -------GKFQEAMELVDTM-PFQANASVWGALLGAAR-----IYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNI 611 (771)
Q Consensus 550 -------g~~~eA~~~~~~m-~~~p~~~~~~~ll~a~~-----~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 611 (771)
+.++++++.++++ ...||. .|.-+-.+.. ..+..+.....+.++.++||...+.|.-|.+-
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 5688888888887 467775 5653333221 24667778888999999999888877766543
No 146
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.18 E-value=9.7e-05 Score=75.57 Aligned_cols=208 Identities=12% Similarity=0.062 Sum_probs=119.5
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-CHHHHHHHHhhCC---CCChhHHHHHHHHHHHc-C-ChHHHHHHHHHH
Q 046775 418 GKQVHVHIIKFGFMSDTFAGNSLVNMYAKCG-SIDDADRAFSEIP---DRGIVSWSAMIGGLAQH-G-RGKEALQMFGQM 491 (771)
Q Consensus 418 a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g-~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~-g-~~~~A~~l~~~m 491 (771)
|..+.+.++..+ +.+..+++.--..+...| .++++.+.++.+. .++..+|+.-...+... + ++++++++++++
T Consensus 73 AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~ 151 (349)
T 3q7a_A 73 ALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGS 151 (349)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 444444444433 333344444444444455 3666666666554 33455666655555554 5 666777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCcHH--------HHHHHHHHHHHhhCCCC-CcchHHHHHHHHhhcCC-------HHHH
Q 046775 492 LEDGVLPNHITLVSVLCACNHAGLVA--------EAKHHFESMEKKFGIQP-MQEHYACMIDILGRAGK-------FQEA 555 (771)
Q Consensus 492 ~~~g~~pd~~t~~~ll~a~~~~g~~~--------~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~-------~~eA 555 (771)
.+.. +-|...+..-.....+.|..+ +++++++++.+. .| +...|+....++.+.|+ ++++
T Consensus 152 L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~---dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eE 227 (349)
T 3q7a_A 152 LLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV---DGRNNSAWGWRWYLRVSRPGAETSSRSLQDE 227 (349)
T ss_dssp TSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccccchHHHHHH
Confidence 6632 224445554444444444444 777777777654 33 34455666666666665 6777
Q ss_pred HHHHHhC-CCCC-CHhHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhcC------CCCchhHHH
Q 046775 556 MELVDTM-PFQA-NASVWGALLGAARIYKNV--------------------EVGQHAAEMLFAIE------PEKSSTHVL 607 (771)
Q Consensus 556 ~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~--------------------~~a~~~~~~~~~l~------p~~~~~~~~ 607 (771)
+++++++ ...| |...|.-+-+.+...|+. ..-...+..++... +..+-+...
T Consensus 228 Le~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~ 307 (349)
T 3q7a_A 228 LIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEY 307 (349)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHH
Confidence 7777665 2444 566887777766655543 22222222222222 456677889
Q ss_pred HHHHHHhcCCchhHHHHHHHHHh
Q 046775 608 LSNIYASAGMWDNVAKVRRFMKD 630 (771)
Q Consensus 608 l~~~y~~~g~~~~a~~~~~~m~~ 630 (771)
|+.+|...|+.++|.++.+.+.+
T Consensus 308 l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 308 LADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Confidence 99999999999999999998864
No 147
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.17 E-value=3e-05 Score=78.71 Aligned_cols=165 Identities=9% Similarity=-0.046 Sum_probs=80.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 046775 367 CTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAK 446 (771)
Q Consensus 367 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k 446 (771)
+...+..+...|++++|++.+.+..+.... ..... . ....+..+...|..
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~-~----------------------------~~~~~~~~~~~~~~ 127 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQ-Q----------------------------FLQWQYYVAAYVLK 127 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHH-H----------------------------HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHH-H----------------------------HHHHHHHHHHHHhc
Confidence 444566677777888888777766553211 11000 0 00111223344445
Q ss_pred cCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHh
Q 046775 447 CGSIDDADRAFSEIPD-----RG----IVSWSAMIGGLAQHGRGKEALQMFGQMLED-GVLPN-----HITLVSVLCACN 511 (771)
Q Consensus 447 ~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd-----~~t~~~ll~a~~ 511 (771)
.|++++|...|+.... .+ ..+|+.+...|...|++++|+..|++..+. ...|+ ..++..+...|.
T Consensus 128 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~ 207 (293)
T 2qfc_A 128 KVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY 207 (293)
T ss_dssp SSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHH
Confidence 5555555555443320 11 225555566666666666666666655521 01111 134555555666
Q ss_pred ccCcHHHHHHHHHHHHHhh---CCCCC-cchHHHHHHHHhhcCCHHHH-HHHHHh
Q 046775 512 HAGLVAEAKHHFESMEKKF---GIQPM-QEHYACMIDILGRAGKFQEA-MELVDT 561 (771)
Q Consensus 512 ~~g~~~~a~~~~~~m~~~~---~i~p~-~~~y~~lv~~l~r~g~~~eA-~~~~~~ 561 (771)
..|++++|..+|++..+.. +..+. ...|..+...|.+.|++++| ...+++
T Consensus 208 ~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 208 LDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 6666666666666554321 10111 34455666666666666666 444443
No 148
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.16 E-value=1.5e-05 Score=73.84 Aligned_cols=130 Identities=11% Similarity=0.073 Sum_probs=96.2
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHH-HhhcCCH--
Q 046775 476 AQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDI-LGRAGKF-- 552 (771)
Q Consensus 476 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~-l~r~g~~-- 552 (771)
...|++++|+..|++..... +.+...+..+...+...|++++|..+|++..+.. +.+...+..+..+ +.+.|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 45677888888888887742 3345677788888888888999988888887652 2245667777777 7788888
Q ss_pred HHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 046775 553 QEAMELVDTM-PFQAN-ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLL 608 (771)
Q Consensus 553 ~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l 608 (771)
++|.+.+++. ...|+ ..+|..+...+...|+.+.|...++++++++|+++.....+
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 155 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV 155 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 9999888876 24454 56888888889999999999999999999999887655443
No 149
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.15 E-value=3.9e-06 Score=74.83 Aligned_cols=106 Identities=9% Similarity=0.025 Sum_probs=66.8
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC-CcchHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC-HhHHHHHHHHHH
Q 046775 503 LVSVLCACNHAGLVAEAKHHFESMEKKFGIQP-MQEHYACMIDILGRAGKFQEAMELVDTMP-FQAN-ASVWGALLGAAR 579 (771)
Q Consensus 503 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p~-~~~~~~ll~a~~ 579 (771)
+..+...+...|++++|..+|+..... .| +...|..+..+|.+.|++++|.+.+++.- ..|+ ...|..+..++.
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 344444555556666666665555533 33 24445555666666666666666665542 3343 346777777778
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 046775 580 IYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNI 611 (771)
Q Consensus 580 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 611 (771)
..|+.+.|...++++++++|+++........+
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 88888888888999999999888776555443
No 150
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.14 E-value=1.4e-05 Score=70.34 Aligned_cols=97 Identities=9% Similarity=-0.026 Sum_probs=78.0
Q ss_pred CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 046775 535 MQEHYACMIDILGRAGKFQEAMELVDTM-PFQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIY 612 (771)
Q Consensus 535 ~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 612 (771)
+...|..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|+.+.|...++++++++|+++.++..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 3556666777777777777777777665 2344 3557888888888899999999999999999999999999999999
Q ss_pred HhcCCchhHHHHHHHHHhC
Q 046775 613 ASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 613 ~~~g~~~~a~~~~~~m~~~ 631 (771)
...|++++|.+.++...+.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 9999999999998877654
No 151
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.13 E-value=3.3e-05 Score=68.69 Aligned_cols=114 Identities=12% Similarity=0.030 Sum_probs=73.0
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchH
Q 046775 464 GIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNH----ITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHY 539 (771)
Q Consensus 464 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y 539 (771)
+...|..+...+...|++++|++.|++..+ ..|+. ..+..+..++...|++++|..+|+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---------- 94 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---------- 94 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh----------
Confidence 345666666666667777777777776666 34552 34444444555555555555555544322
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 046775 540 ACMIDILGRAGKFQEAMELVDTMPFQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYAS 614 (771)
Q Consensus 540 ~~lv~~l~r~g~~~eA~~~~~~m~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 614 (771)
.| +..+|..+..++...|+.+.|...++++++++|+++..+..+..+...
T Consensus 95 -------------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 95 -------------------------DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp -------------------------TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred -------------------------CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 23 344666677777778888888888888888889888877777766543
No 152
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.12 E-value=2.6e-05 Score=71.01 Aligned_cols=91 Identities=14% Similarity=0.014 Sum_probs=36.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHh
Q 046775 468 WSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILG 547 (771)
Q Consensus 468 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~ 547 (771)
|..+...+...|++++|+..|++..+.. +.+..++..+...+...|++++|..+|++..+.. +.+...|..+..++.
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHH
Confidence 3333344444444444444444444321 1122333334444444444444444444443321 112333444444444
Q ss_pred hcCCHHHHHHHHHh
Q 046775 548 RAGKFQEAMELVDT 561 (771)
Q Consensus 548 r~g~~~eA~~~~~~ 561 (771)
+.|++++|.+.+++
T Consensus 93 ~~~~~~~A~~~~~~ 106 (166)
T 1a17_A 93 ALGKFRAALRDYET 106 (166)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HhccHHHHHHHHHH
Confidence 44444444444443
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.11 E-value=4e-05 Score=64.87 Aligned_cols=74 Identities=15% Similarity=0.111 Sum_probs=43.8
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 046775 539 YACMIDILGRAGKFQEAMELVDTM-PFQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIY 612 (771)
Q Consensus 539 y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 612 (771)
+..+..++.+.|++++|.+.+++. ...| +..+|..+..++...|+.+.|...++++++++|+++..+..++.+.
T Consensus 41 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 41 YSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 333444444444444444444433 1223 3446666666777777777777888888888887777776666543
No 154
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.10 E-value=1.6e-05 Score=72.63 Aligned_cols=63 Identities=6% Similarity=0.049 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 046775 569 SVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 569 ~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
.+|..+..++...|+.+.|...++++++++|+++.+|..++.+|...|++++|...++...+.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 478888888889999999999999999999999999999999999999999999998876554
No 155
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.08 E-value=1.7e-05 Score=72.61 Aligned_cols=90 Identities=11% Similarity=0.032 Sum_probs=43.1
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 046775 540 ACMIDILGRAGKFQEAMELVDTM-PFQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGM 617 (771)
Q Consensus 540 ~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 617 (771)
..+...+.+.|++++|++.+++. ...| +..+|..+..++...|+.+.|...++++++++|+++.+|..++.+|...|+
T Consensus 15 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 94 (164)
T 3sz7_A 15 KSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMAD 94 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Confidence 33334444444444444444333 1222 233444444455555555555555555555555555555555555555555
Q ss_pred chhHHHHHHHHH
Q 046775 618 WDNVAKVRRFMK 629 (771)
Q Consensus 618 ~~~a~~~~~~m~ 629 (771)
+++|.+.++...
T Consensus 95 ~~~A~~~~~~al 106 (164)
T 3sz7_A 95 YKGAKEAYEKGI 106 (164)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
No 156
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.08 E-value=5.7e-06 Score=90.38 Aligned_cols=115 Identities=13% Similarity=0.060 Sum_probs=70.5
Q ss_pred HHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcH
Q 046775 441 VNMYAKCGSIDDADRAFSEIP---DRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPN-HITLVSVLCACNHAGLV 516 (771)
Q Consensus 441 i~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~ 516 (771)
...|.+.|++++|.+.|++.. ..+..+|..+..+|.+.|++++|++.|++..+. .|+ ..++..+..++...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 344566777777777777654 334567777777777777777777777777773 443 34666666777777777
Q ss_pred HHHHHHHHHHHHhhCCCCC-cchHHHHHHH--HhhcCCHHHHHHHHH
Q 046775 517 AEAKHHFESMEKKFGIQPM-QEHYACMIDI--LGRAGKFQEAMELVD 560 (771)
Q Consensus 517 ~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~--l~r~g~~~eA~~~~~ 560 (771)
++|.+.|++..+. .|+ ...+..+..+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777777776654 333 3344444444 566667777776666
No 157
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.08 E-value=1.9e-05 Score=67.00 Aligned_cols=96 Identities=5% Similarity=-0.024 Sum_probs=81.8
Q ss_pred cchHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 046775 536 QEHYACMIDILGRAGKFQEAMELVDTMP-FQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYA 613 (771)
Q Consensus 536 ~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 613 (771)
...+..++..+.+.|++++|.+.+++.- ..| +..+|..+...+...|+.+.|...++++++++|+++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3456667777888888888888887762 344 56688888889999999999999999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHhC
Q 046775 614 SAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 614 ~~g~~~~a~~~~~~m~~~ 631 (771)
..|++++|.+.++...+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 999999999999877654
No 158
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.08 E-value=2.1e-05 Score=67.39 Aligned_cols=96 Identities=17% Similarity=0.225 Sum_probs=85.7
Q ss_pred cchHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 046775 536 QEHYACMIDILGRAGKFQEAMELVDTMP-FQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYA 613 (771)
Q Consensus 536 ~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 613 (771)
...|..+...+.+.|++++|.+.++++. ..| +..+|..+...+...|+.+.|...++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 4567888899999999999999998873 334 56688899999999999999999999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHhC
Q 046775 614 SAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 614 ~~g~~~~a~~~~~~m~~~ 631 (771)
..|++++|.+.++.+.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999887654
No 159
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.06 E-value=1.2e-05 Score=81.07 Aligned_cols=91 Identities=10% Similarity=-0.013 Sum_probs=47.2
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHHhcC---CCceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC-CHhhHHHHHHHhh
Q 046775 335 IVNSLIDAYGKCGHVEDAVKIFKESS---AVDLVACTSMITAYAQFGLGEEALKLYLEMQDREINP-DSFVCSSLLNACA 410 (771)
Q Consensus 335 ~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~ 410 (771)
.+..+...|.+.|++++|...|++.. ..+...|..+...|.+.|++++|+..|++..+. .| +...+..+..++.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 34445555556666666666665432 234455555556666666666666666665543 22 2334444444445
Q ss_pred cccchHHHHHHHHHHHH
Q 046775 411 NLSAYEQGKQVHVHIIK 427 (771)
Q Consensus 411 ~~~~~~~a~~i~~~~~~ 427 (771)
..|++++|...+..+.+
T Consensus 84 ~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYS 100 (281)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555544443
No 160
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.04 E-value=0.0013 Score=67.27 Aligned_cols=229 Identities=10% Similarity=-0.034 Sum_probs=158.7
Q ss_pred HHHcCChHHHHHHHHHHhcCCCCCCHhh-HHHHHHHhhccc-chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-C-C
Q 046775 374 YAQFGLGEEALKLYLEMQDREINPDSFV-CSSLLNACANLS-AYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKC-G-S 449 (771)
Q Consensus 374 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~-~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~-g-~ 449 (771)
....+..++|++++.++... .|+..| ++.--......+ .++++....+.+++.. +.+..+|+.-...+.+. + +
T Consensus 64 ~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSC
T ss_pred HHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCC
Confidence 34445567788888888763 455443 343334444556 4788888888888766 56677777777777776 6 8
Q ss_pred HHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc---
Q 046775 450 IDDADRAFSEIPD---RGIVSWSAMIGGLAQHGRGK--------EALQMFGQMLEDGVLPNHITLVSVLCACNHAGL--- 515 (771)
Q Consensus 450 ~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~--- 515 (771)
++++.++++.+.+ +|..+|+--.-.+.+.|..+ ++++.++++++.. .-|...+........+.+.
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccccc
Confidence 8899999998874 45677877666666666666 9999999999953 3366677777777777765
Q ss_pred ----HHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCH--------------------HHHHHHHHhCCC------
Q 046775 516 ----VAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKF--------------------QEAMELVDTMPF------ 564 (771)
Q Consensus 516 ----~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~--------------------~eA~~~~~~m~~------ 564 (771)
+++++++++++... .|+ ...|.-+-.++.+.|+- .+..++..++.-
T Consensus 220 ~~~~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp CHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred chHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence 78999999888754 555 55677777777777653 455555555531
Q ss_pred --CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCCchhHHHHH
Q 046775 565 --QANASVWGALLGAARIYKNVEVGQHAAEMLF-AIEPEKSSTHVLLS 609 (771)
Q Consensus 565 --~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~-~l~p~~~~~~~~l~ 609 (771)
.+.+..+..|+..+...|+.+.|..+++.+. +.||-....+...+
T Consensus 297 ~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 2456688888899999999999999999997 78997666655443
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.04 E-value=2.5e-05 Score=71.44 Aligned_cols=105 Identities=14% Similarity=0.016 Sum_probs=66.1
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC-CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHH
Q 046775 503 LVSVLCACNHAGLVAEAKHHFESMEKKFGIQP-MQEHYACMIDILGRAGKFQEAMELVDTM-PFQAN-ASVWGALLGAAR 579 (771)
Q Consensus 503 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~ 579 (771)
+..+...+...|++++|+.+|++..+. .| +...|..+..+|.+.|++++|++.+++. ...|+ ..+|..+..++.
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 334444444445555555554444432 22 2344555555555555555555555554 23443 557888888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 046775 580 IYKNVEVGQHAAEMLFAIEPEKSSTHVLLSN 610 (771)
Q Consensus 580 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 610 (771)
..|+.+.|...++++++++|+++..|...+-
T Consensus 91 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 9999999999999999999999987765553
No 162
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.03 E-value=2.5e-05 Score=67.66 Aligned_cols=77 Identities=12% Similarity=0.044 Sum_probs=47.2
Q ss_pred chHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCchhHHHH
Q 046775 537 EHYACMIDILGRAGKFQEAMELVDTM-PFQAN-ASVWGALLGAARIYKNVEVGQHAAEMLFAIE------PEKSSTHVLL 608 (771)
Q Consensus 537 ~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~------p~~~~~~~~l 608 (771)
..|..+..++.+.|++++|.+.+++. ...|+ ...|..+..++...|+.+.|...++++++++ |+++.....+
T Consensus 39 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l 118 (126)
T 3upv_A 39 RGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLY 118 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHH
Confidence 34444444444445555554444443 12333 4466677777777788888888888888888 7777776666
Q ss_pred HHHHH
Q 046775 609 SNIYA 613 (771)
Q Consensus 609 ~~~y~ 613 (771)
..+..
T Consensus 119 ~~~~~ 123 (126)
T 3upv_A 119 YKASQ 123 (126)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 163
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.02 E-value=3.6e-05 Score=68.44 Aligned_cols=96 Identities=10% Similarity=0.000 Sum_probs=82.2
Q ss_pred cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 046775 536 QEHYACMIDILGRAGKFQEAMELVDTM-PFQAN----ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSN 610 (771)
Q Consensus 536 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 610 (771)
...+..+...+.+.|++++|.+.+++. ...|+ ..+|..+...+...|+.+.|...++++++++|+++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 455667777788888888888888776 45676 4688888888899999999999999999999999999999999
Q ss_pred HHHhcCCchhHHHHHHHHHhC
Q 046775 611 IYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 611 ~y~~~g~~~~a~~~~~~m~~~ 631 (771)
+|...|++++|.+.++...+.
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHc
Confidence 999999999999998877654
No 164
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.02 E-value=2.1e-05 Score=68.52 Aligned_cols=96 Identities=9% Similarity=0.014 Sum_probs=81.8
Q ss_pred cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 046775 536 QEHYACMIDILGRAGKFQEAMELVDTM-PFQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYA 613 (771)
Q Consensus 536 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 613 (771)
...|..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|+.+.|...++++++++|+++..+..++.+|.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 455677777888888888888888775 3455 45688888888888999999999999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHhC
Q 046775 614 SAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 614 ~~g~~~~a~~~~~~m~~~ 631 (771)
..|++++|.+.++...+.
T Consensus 96 ~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHh
Confidence 999999999999877654
No 165
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.02 E-value=2.5e-05 Score=67.79 Aligned_cols=91 Identities=12% Similarity=0.046 Sum_probs=64.2
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCC-CCCCH----hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHH
Q 046775 541 CMIDILGRAGKFQEAMELVDTMP-FQANA----SVWGALLGAARIYKNVEVGQHAAEMLFAIEPEK---SSTHVLLSNIY 612 (771)
Q Consensus 541 ~lv~~l~r~g~~~eA~~~~~~m~-~~p~~----~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~---~~~~~~l~~~y 612 (771)
.+...+.+.|++++|.+.+++.- ..|+. .+|..+..++...|+.+.|...++++++..|++ +.++..++.+|
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 34555666677777776666541 22322 266666667777888888888888888888887 66788888888
Q ss_pred HhcCCchhHHHHHHHHHhC
Q 046775 613 ASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 613 ~~~g~~~~a~~~~~~m~~~ 631 (771)
...|++++|.+.++...+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8888888888887766543
No 166
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.99 E-value=6.7e-05 Score=64.78 Aligned_cols=96 Identities=13% Similarity=0.028 Sum_probs=85.3
Q ss_pred cchHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 046775 536 QEHYACMIDILGRAGKFQEAMELVDTMP-FQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYA 613 (771)
Q Consensus 536 ~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 613 (771)
...+..+...+...|++++|.+.+++.- ..| +..+|..+...+...|+.+.|...++++++++|+++..+..++.+|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 4567778889999999999999998862 344 56688888889999999999999999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHhC
Q 046775 614 SAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 614 ~~g~~~~a~~~~~~m~~~ 631 (771)
..|++++|.+.++...+.
T Consensus 92 ~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhc
Confidence 999999999999877654
No 167
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.98 E-value=0.00016 Score=80.38 Aligned_cols=168 Identities=13% Similarity=-0.000 Sum_probs=134.0
Q ss_pred CCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcc
Q 046775 448 GSIDDADRAFSEIP---DRGIVSWSAMIGGLAQHGR----------GKEALQMFGQMLEDGVLP-NHITLVSVLCACNHA 513 (771)
Q Consensus 448 g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~ 513 (771)
..-++|.+.++.+. ..+...|+.--..+...|+ ++++++.++++.+. .| +..+|..-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 34466777777765 3445778877777777777 89999999999984 45 455788888888888
Q ss_pred C--cHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcC-CHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhc------
Q 046775 514 G--LVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAG-KFQEAMELVDTM-PFQA-NASVWGALLGAARIY------ 581 (771)
Q Consensus 514 g--~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g-~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~------ 581 (771)
| ++++++++++++.+. .|. ...|+.-..++.+.| .++++.++++++ ...| |...|..........
T Consensus 121 ~~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 121 PEPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp SSCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred ccccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 8 779999999999865 454 556777777888888 899999999888 3556 567999888877653
Q ss_pred --------CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchh
Q 046775 582 --------KNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDN 620 (771)
Q Consensus 582 --------~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 620 (771)
+.++.+...++++++++|+|..+|..+.+++...|+.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457899999999999999999999999999999999665
No 168
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.97 E-value=1.6e-05 Score=69.22 Aligned_cols=92 Identities=8% Similarity=-0.040 Sum_probs=71.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch-------hHHHHH
Q 046775 539 YACMIDILGRAGKFQEAMELVDTM-PFQAN-ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSS-------THVLLS 609 (771)
Q Consensus 539 y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~-------~~~~l~ 609 (771)
+..+...+.+.|++++|++.+++. .+.|+ ..+|..+..++...|+.+.|...++++++++|++.. +|..++
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 445666677777777777777665 24554 557888888888999999999999999999887754 677888
Q ss_pred HHHHhcCCchhHHHHHHHHHh
Q 046775 610 NIYASAGMWDNVAKVRRFMKD 630 (771)
Q Consensus 610 ~~y~~~g~~~~a~~~~~~m~~ 630 (771)
++|...|++++|.+.++...+
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999876543
No 169
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.95 E-value=0.00073 Score=68.72 Aligned_cols=177 Identities=12% Similarity=0.041 Sum_probs=126.4
Q ss_pred HHHHHHHHhhCC---CCChhHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc-HHHHHHHH
Q 046775 450 IDDADRAFSEIP---DRGIVSWSAMIGGLAQHGR--GKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGL-VAEAKHHF 523 (771)
Q Consensus 450 ~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~-~~~a~~~~ 523 (771)
++++...++.+. .++..+|+.-...+...|+ +++++++++++.+.. +-|...|..-...+.+.|. ++++++++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 567777777665 5677899988888888884 799999999999953 3366677777777778887 69999999
Q ss_pred HHHHHhhCCCCC-cchHHHHHHHHhhc--------------CCHHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhc-----
Q 046775 524 ESMEKKFGIQPM-QEHYACMIDILGRA--------------GKFQEAMELVDTMP-FQA-NASVWGALLGAARIY----- 581 (771)
Q Consensus 524 ~~m~~~~~i~p~-~~~y~~lv~~l~r~--------------g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~----- 581 (771)
+.+.+. .|+ ...|+....++.+. +.++++++++++.- ..| |..+|+-+-+.....
T Consensus 169 ~~~I~~---~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITR---NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHH---CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHH---CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc
Confidence 999865 454 45566666666554 56889999998763 455 677998776665544
Q ss_pred ------CCHHHHHHHHHHHHhcCCCCchhHHHHHHHH---HhcCCchhHHHHHHHHHh
Q 046775 582 ------KNVEVGQHAAEMLFAIEPEKSSTHVLLSNIY---ASAGMWDNVAKVRRFMKD 630 (771)
Q Consensus 582 ------~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y---~~~g~~~~a~~~~~~m~~ 630 (771)
+-++.+...++++++++|++.-.+..++-+. ...|..+++......+.+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 3478999999999999998855444333222 234555566555555544
No 170
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.93 E-value=4.2e-05 Score=83.05 Aligned_cols=143 Identities=14% Similarity=0.108 Sum_probs=96.9
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHH
Q 046775 465 IVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMID 544 (771)
Q Consensus 465 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~ 544 (771)
...|..+...|.+.|++++|+..|++.++ +.|+...+ . -++..+ .... ....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~----------~-~~~~~~-~~~~--------~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGL----------S-EKESKA-SESF--------LLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSC----------C-HHHHHH-HHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccC----------C-hHHHHH-HHHH--------HHHHHHHHHH
Confidence 45677777788888888888888888776 23332100 0 000000 0000 1345667777
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHH
Q 046775 545 ILGRAGKFQEAMELVDTM-PFQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVA 622 (771)
Q Consensus 545 ~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 622 (771)
+|.+.|++++|++.+++. ...| +...|..+..++...|+.+.|...++++++++|++..++..|+.++...|+++++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 777778888877777765 2344 45588888889999999999999999999999999999999999999999999886
Q ss_pred HH-HHHHH
Q 046775 623 KV-RRFMK 629 (771)
Q Consensus 623 ~~-~~~m~ 629 (771)
+- ++.|-
T Consensus 406 ~~~~~~~f 413 (457)
T 1kt0_A 406 RRIYANMF 413 (457)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 53 44443
No 171
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.92 E-value=6.4e-05 Score=67.06 Aligned_cols=110 Identities=11% Similarity=-0.006 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--------H-----HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCC
Q 046775 467 SWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPN--------H-----ITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQ 533 (771)
Q Consensus 467 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--------~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~ 533 (771)
.|......+.+.|++++|+..|++.++ +.|+ . ..|..+..++...|++++|+..++...+.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l---- 86 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY---- 86 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----
Confidence 455666777788888888888888887 4554 1 15566666666666666666666554421
Q ss_pred CCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHh-HH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHH
Q 046775 534 PMQEHYACMIDILGRAGKFQEAMELVDTMPFQANAS-VW----GALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHV 606 (771)
Q Consensus 534 p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~-~~----~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~ 606 (771)
+- +..++.|+.. .| .....++...|+.+.|...++++++++|+|.+.+-
T Consensus 87 ------------~n------------~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~ 140 (159)
T 2hr2_A 87 ------------FN------------RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETP 140 (159)
T ss_dssp ------------HH------------HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCT
T ss_pred ------------hh------------ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 11 1224577655 88 88889999999999999999999999998887543
No 172
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.91 E-value=8.5e-06 Score=69.77 Aligned_cols=83 Identities=10% Similarity=0.035 Sum_probs=59.3
Q ss_pred hcCCHHHHHHHHHhCC-C---CCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHH
Q 046775 548 RAGKFQEAMELVDTMP-F---QAN-ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVA 622 (771)
Q Consensus 548 r~g~~~eA~~~~~~m~-~---~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 622 (771)
..|++++|++.+++.- . .|+ ..+|..+...+...|+.+.|...++++++++|+++.++..++.+|...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 3466666666666652 3 243 3477777778888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHh
Q 046775 623 KVRRFMKD 630 (771)
Q Consensus 623 ~~~~~m~~ 630 (771)
+.++...+
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87776644
No 173
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.88 E-value=6.2e-05 Score=65.40 Aligned_cols=92 Identities=8% Similarity=-0.039 Sum_probs=39.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC-C----cchHHH
Q 046775 468 WSAMIGGLAQHGRGKEALQMFGQMLEDGVLPN-HITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQP-M----QEHYAC 541 (771)
Q Consensus 468 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~----~~~y~~ 541 (771)
|..+...|.+.|++++|++.|++.++ +.|+ ...+..+..++...|++++|++.|++..+...-.+ . ...|..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34444444444444555554444444 2332 22344444444445555555544444432210000 0 123444
Q ss_pred HHHHHhhcCCHHHHHHHHHh
Q 046775 542 MIDILGRAGKFQEAMELVDT 561 (771)
Q Consensus 542 lv~~l~r~g~~~eA~~~~~~ 561 (771)
+...+...|++++|++.+++
T Consensus 89 lg~~~~~~~~~~~A~~~~~k 108 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHR 108 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 44555555555555555544
No 174
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.86 E-value=4.1e-05 Score=68.33 Aligned_cols=62 Identities=8% Similarity=0.003 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCchhH----HHHHHHHHhcCCchhHHHHHHHHHh
Q 046775 569 SVWGALLGAARIYKNVEVGQHAAEMLFAI-------EPEKSSTH----VLLSNIYASAGMWDNVAKVRRFMKD 630 (771)
Q Consensus 569 ~~~~~ll~a~~~~~~~~~a~~~~~~~~~l-------~p~~~~~~----~~l~~~y~~~g~~~~a~~~~~~m~~ 630 (771)
..|..+..++...|+.+.|...+++++++ +|+++.+| ..++.++...|++++|...++...+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 37888888888889999999999999988 99999999 9999999999999999999987754
No 175
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.86 E-value=8.8e-05 Score=64.07 Aligned_cols=94 Identities=9% Similarity=0.020 Sum_probs=72.8
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------chhHHHH
Q 046775 538 HYACMIDILGRAGKFQEAMELVDTMP-FQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEK-------SSTHVLL 608 (771)
Q Consensus 538 ~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~-------~~~~~~l 608 (771)
.|..+...+.+.|++++|...+++.- ..| +..+|..+...+...|+.+.|...+++++++.|++ +..|..+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 45556666677777777777776652 233 45577777778888888999999999999988876 7788999
Q ss_pred HHHHHhcCCchhHHHHHHHHHhC
Q 046775 609 SNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 609 ~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
+.+|...|++++|.+.++...+.
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999999999998877653
No 176
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.85 E-value=7.5e-05 Score=77.42 Aligned_cols=138 Identities=14% Similarity=0.016 Sum_probs=97.4
Q ss_pred ccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CC-C---------------hhHHHHHHH
Q 046775 412 LSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIP--DR-G---------------IVSWSAMIG 473 (771)
Q Consensus 412 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--~~-~---------------~~~~~~li~ 473 (771)
+.+++.|...+....+.. +.+...+..+...|.+.|++++|...|++.. .| + ...|..+..
T Consensus 126 L~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 344445544444333221 2356788889999999999999999999765 23 2 367888888
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCC
Q 046775 474 GLAQHGRGKEALQMFGQMLEDGVLP-NHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGK 551 (771)
Q Consensus 474 ~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~ 551 (771)
+|.+.|++++|+..|++.++. .| +...+..+..++...|++++|+..|++..+. .|+ ...+..+..++.+.|+
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~l~~~~~~~~~ 279 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL---YPNNKAAKTQLAVCQQRIRR 279 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHH
Confidence 888888888888888888884 45 4457777777888888888888888877654 443 4455666666666666
Q ss_pred HHHH
Q 046775 552 FQEA 555 (771)
Q Consensus 552 ~~eA 555 (771)
.++|
T Consensus 280 ~~~a 283 (336)
T 1p5q_A 280 QLAR 283 (336)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6666
No 177
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.84 E-value=0.0001 Score=64.68 Aligned_cols=96 Identities=8% Similarity=-0.028 Sum_probs=52.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHhHHHHHHHHH
Q 046775 502 TLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAMELVDTMP-FQA-NASVWGALLGAA 578 (771)
Q Consensus 502 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~ 578 (771)
.+..+...+...|++++|..+|+...+. .|+ ...|..+..++.+.|++++|...+++.- ..| +..+|..+..++
T Consensus 11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 11 ELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 3444444444444444444444444332 222 3344444555555555555555554431 233 344677777777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCC
Q 046775 579 RIYKNVEVGQHAAEMLFAIEPE 600 (771)
Q Consensus 579 ~~~~~~~~a~~~~~~~~~l~p~ 600 (771)
...|+.+.|...++++++++|+
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHChh
Confidence 7778888888888888888776
No 178
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.81 E-value=7.7e-05 Score=78.32 Aligned_cols=137 Identities=10% Similarity=0.027 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC-CcchHHHHHH
Q 046775 466 VSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQP-MQEHYACMID 544 (771)
Q Consensus 466 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~ 544 (771)
..|..+...|.+.|++++|++.|++.++. .|+.. ..-..+++ . .+.| ....|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~~-------~---~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDADG-------A---KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHHH-------G---GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHHH-------H---HHHHHHHHHHHHHHH
Confidence 45777778888888888888888887762 11110 00001111 0 1122 2456778888
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHH
Q 046775 545 ILGRAGKFQEAMELVDTM-PFQAN-ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVA 622 (771)
Q Consensus 545 ~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 622 (771)
+|.+.|++++|++.+++. ...|+ ..+|..+..++...|+.+.|...++++++++|++...+..|+.++...|+.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999888876 45664 5588888889999999999999999999999999999999999999988887775
Q ss_pred HH
Q 046775 623 KV 624 (771)
Q Consensus 623 ~~ 624 (771)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 43
No 179
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.81 E-value=0.0002 Score=67.56 Aligned_cols=63 Identities=11% Similarity=-0.040 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 046775 569 SVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 569 ~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
.+|..+..++...|+.+.|...++++++++|+++.+|..++.+|...|++++|.+.++...+.
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 578888888999999999999999999999999999999999999999999999998876544
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.78 E-value=0.00028 Score=60.93 Aligned_cols=100 Identities=13% Similarity=-0.009 Sum_probs=56.1
Q ss_pred HHhccCcHHHHHHHHHHHHHhhCCCCCc----chHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC----HhHHHHHHHHHH
Q 046775 509 ACNHAGLVAEAKHHFESMEKKFGIQPMQ----EHYACMIDILGRAGKFQEAMELVDTMP-FQAN----ASVWGALLGAAR 579 (771)
Q Consensus 509 a~~~~g~~~~a~~~~~~m~~~~~i~p~~----~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p~----~~~~~~ll~a~~ 579 (771)
.+...|++++|...|+...+. .|+. ..+..+..++.+.|++++|.+.+++.- ..|+ ..+|..+..++.
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 11 DALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 334444455555544444433 1221 234445555555555555555554431 2232 335666666777
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 046775 580 IYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNI 611 (771)
Q Consensus 580 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 611 (771)
..|+.+.|...++++++..|+++.....+..+
T Consensus 88 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 78888888888888888888777665544443
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.78 E-value=0.00013 Score=65.64 Aligned_cols=136 Identities=14% Similarity=0.024 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCH----HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHH
Q 046775 466 VSWSAMIGGLAQHGRGKEALQMFGQMLEDGVL-PNH----ITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYA 540 (771)
Q Consensus 466 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~ 540 (771)
.++..+...|...|++++|+..+++..+..-. ++. .++..+...+...|++++|..++++..+...-.++
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~----- 84 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD----- 84 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-----
Confidence 45666777777778888888877777652100 111 24455555566666666666666655432110111
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CCchhHHHHHHHHH
Q 046775 541 CMIDILGRAGKFQEAMELVDTMPFQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEP------EKSSTHVLLSNIYA 613 (771)
Q Consensus 541 ~lv~~l~r~g~~~eA~~~~~~m~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p------~~~~~~~~l~~~y~ 613 (771)
.+ ...++..+...+...|+.+.|...+++++++.+ ..+..+..++.+|.
T Consensus 85 ------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 140 (164)
T 3ro3_A 85 ------------------------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT 140 (164)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ------------------------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH
Confidence 00 022444455555566666666666666665422 12446778888999
Q ss_pred hcCCchhHHHHHHHHHh
Q 046775 614 SAGMWDNVAKVRRFMKD 630 (771)
Q Consensus 614 ~~g~~~~a~~~~~~m~~ 630 (771)
..|++++|.+.++...+
T Consensus 141 ~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 141 ALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 99999998888776543
No 182
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.77 E-value=8.7e-05 Score=64.11 Aligned_cols=116 Identities=8% Similarity=-0.072 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHH
Q 046775 466 VSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDI 545 (771)
Q Consensus 466 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~ 545 (771)
..|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|..+|+...+.. |+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~---------- 70 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG---RE---------- 70 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HH----------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---cc----------
Confidence 356666667777777777777777776632 2244455566666666666666666666655431 11
Q ss_pred HhhcCCHHHHHHHHHhCCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 046775 546 LGRAGKFQEAMELVDTMPFQAN----ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYAS 614 (771)
Q Consensus 546 l~r~g~~~eA~~~~~~m~~~p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 614 (771)
..++ ..+|..+..++...|+.+.|...+++++++.| ++.....+..++..
T Consensus 71 ------------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 71 ------------------NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp ------------------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ------------------cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 0111 33566666667777777777777777777777 56666555555443
No 183
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.77 E-value=7.4e-05 Score=64.29 Aligned_cols=91 Identities=16% Similarity=0.130 Sum_probs=46.0
Q ss_pred HHhccCcHHHHHHHHHHHHHhhCCCC-CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHH
Q 046775 509 ACNHAGLVAEAKHHFESMEKKFGIQP-MQEHYACMIDILGRAGKFQEAMELVDTM-PFQAN-ASVWGALLGAARIYKNVE 585 (771)
Q Consensus 509 a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~~~ 585 (771)
.+...|++++|+..|++..+. .| +...|..+..++.+.|++++|+..+++. ...|+ ...|..|..++...|+.+
T Consensus 26 ~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~ 102 (121)
T 1hxi_A 26 SMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNAN 102 (121)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 344444444444444444432 23 2334444445555555555555555443 13443 346666666777777777
Q ss_pred HHHHHHHHHHhcCCCCc
Q 046775 586 VGQHAAEMLFAIEPEKS 602 (771)
Q Consensus 586 ~a~~~~~~~~~l~p~~~ 602 (771)
.|...++++++++|+++
T Consensus 103 ~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 103 AALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHC------
T ss_pred HHHHHHHHHHHhCcCCC
Confidence 77777777888777654
No 184
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.77 E-value=0.00018 Score=77.38 Aligned_cols=162 Identities=4% Similarity=-0.090 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHH----HHHHHHHHHhccCcHHHHHHHHHHHHHhh---CCCCC-cc
Q 046775 467 SWSAMIGGLAQHGRGKEALQMFGQMLED-GVLPNHI----TLVSVLCACNHAGLVAEAKHHFESMEKKF---GIQPM-QE 537 (771)
Q Consensus 467 ~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~i~p~-~~ 537 (771)
++..+...|...|++++|++++.++... +..++.. ....+-..+...|..+++..+++...... +..+. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 3566777888888888888888776652 1112221 12222233445677888888877665432 22222 44
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhCC-------CCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---C----c
Q 046775 538 HYACMIDILGRAGKFQEAMELVDTMP-------FQAN-ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPE---K----S 602 (771)
Q Consensus 538 ~y~~lv~~l~r~g~~~eA~~~~~~m~-------~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~---~----~ 602 (771)
.+..++.+|...|++++|.+++++.. -+|. ..++..+...|...||.+.|...+++++...|. + .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 66778888888899988888887641 1222 236777777888899999999998888876432 2 2
Q ss_pred hhHHHHHHHHHhcCCchhHHHHHHHH
Q 046775 603 STHVLLSNIYASAGMWDNVAKVRRFM 628 (771)
Q Consensus 603 ~~~~~l~~~y~~~g~~~~a~~~~~~m 628 (771)
..+..++.+|...|+|++|.+.+...
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34667788888999999998776555
No 185
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.77 E-value=0.00016 Score=60.33 Aligned_cols=92 Identities=14% Similarity=-0.002 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC---CcchHHHHH
Q 046775 467 SWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQP---MQEHYACMI 543 (771)
Q Consensus 467 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p---~~~~y~~lv 543 (771)
.|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|..+|++..+. .| +...+..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINV---IEDEYNKDVWAAKA 83 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---SCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CcccchHHHHHHHH
Confidence 33444444444444444444444444421 112233444444444444444444444444432 22 233444444
Q ss_pred HHHhhc-CCHHHHHHHHHhC
Q 046775 544 DILGRA-GKFQEAMELVDTM 562 (771)
Q Consensus 544 ~~l~r~-g~~~eA~~~~~~m 562 (771)
.++.+. |++++|.+.+++.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARA 103 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 444444 4444444444443
No 186
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.76 E-value=6.5e-05 Score=81.45 Aligned_cols=100 Identities=15% Similarity=0.120 Sum_probs=66.6
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCc
Q 046775 538 HYACMIDILGRAGKFQEAMELVDTM---------PFQANAS-VWGALLGAARIYKNVEVGQHAAEMLFA-----IEPEKS 602 (771)
Q Consensus 538 ~y~~lv~~l~r~g~~~eA~~~~~~m---------~~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~-----l~p~~~ 602 (771)
+++.|..+|...|++++|+.++++. +..|+.. +++.|...+...|+.+.|+..++++++ +.|++|
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp 432 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP 432 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 3455555555555555555555443 2344433 666777777777777777777777776 466665
Q ss_pred hh---HHHHHHHHHhcCCchhHHHHHHHHHhCCCccCC
Q 046775 603 ST---HVLLSNIYASAGMWDNVAKVRRFMKDNKLKKEP 637 (771)
Q Consensus 603 ~~---~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~ 637 (771)
.+ +.+|..++...|++++|..+++.++++-.+..|
T Consensus 433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~ 470 (490)
T 3n71_A 433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQP 470 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 54 457788899999999999999999886544444
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.76 E-value=5.8e-05 Score=78.32 Aligned_cols=147 Identities=9% Similarity=0.056 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHH
Q 046775 466 VSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDI 545 (771)
Q Consensus 466 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~ 545 (771)
..|..+...+.+.|++++|+..|++.+. +.|+... +...|..+++...+. ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence 3466677778888999999999998887 4566542 233445555443321 1256777888
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH-HhcCCchhHH
Q 046775 546 LGRAGKFQEAMELVDTM-PFQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIY-ASAGMWDNVA 622 (771)
Q Consensus 546 l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y-~~~g~~~~a~ 622 (771)
|.+.|++++|++.+++. ...| +...|..+..++...|+.+.|...++++++++|+++.++..|+.+. ...+..+.+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888776 2445 4557888888888888888888888888888888888888888874 4456677777
Q ss_pred HHHHHHHhCC
Q 046775 623 KVRRFMKDNK 632 (771)
Q Consensus 623 ~~~~~m~~~g 632 (771)
+.++.|-+..
T Consensus 320 ~~~~~~l~~~ 329 (338)
T 2if4_A 320 EMYKGIFKGK 329 (338)
T ss_dssp ----------
T ss_pred HHHHHhhCCC
Confidence 7777765543
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.73 E-value=0.00017 Score=65.55 Aligned_cols=122 Identities=13% Similarity=0.050 Sum_probs=78.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC-Ccch
Q 046775 466 VSWSAMIGGLAQHGRGKEALQMFGQMLEDG------VLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQP-MQEH 538 (771)
Q Consensus 466 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~ 538 (771)
..|......+.+.|++++|+..|++.+..- -.|+...+ ..+ .| ....
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~~------~~~~~~~ 65 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VEL------DRKNIPL 65 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HHH------HHTHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HHH------HHHHHHH
Confidence 356667777778888888888887776620 01111100 000 11 1334
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHH
Q 046775 539 YACMIDILGRAGKFQEAMELVDTM-PFQAN-ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKS-STHVLLSNIYA 613 (771)
Q Consensus 539 y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~-~~~~~l~~~y~ 613 (771)
|..+..+|.+.|++++|+..+++. ...|+ ...|..+..++...|+.+.|...++++++++|+++ .....|..+..
T Consensus 66 ~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 66 YANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 566666666777777777666654 23454 45788888888899999999999999999999888 54555554443
No 189
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.72 E-value=0.0054 Score=65.58 Aligned_cols=251 Identities=6% Similarity=-0.076 Sum_probs=151.0
Q ss_pred HHHhcCCHHHHHHHHHhcCCC-----ce---------------ecHHHHHHHHHHcCChHHHHHHHHHHhcC-CCCCCHh
Q 046775 342 AYGKCGHVEDAVKIFKESSAV-----DL---------------VACTSMITAYAQFGLGEEALKLYLEMQDR-EINPDSF 400 (771)
Q Consensus 342 ~y~k~g~~~~A~~~f~~~~~~-----~~---------------~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~ 400 (771)
.+.+.|++++|.+.|.++.+. +. .++..+...|.+.|++++|.+.+.++... +..++..
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 345667777777776654321 00 13567888888999999999888877642 1112221
Q ss_pred ----hHHHHHHHhhcccchHHHHHHHHHHHHh----CC-CCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--------CC
Q 046775 401 ----VCSSLLNACANLSAYEQGKQVHVHIIKF----GF-MSDTFAGNSLVNMYAKCGSIDDADRAFSEIP--------DR 463 (771)
Q Consensus 401 ----t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g~-~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--------~~ 463 (771)
+...+-..+...|..+.+..++...... +. ..-..++..|...|...|++++|..+++... .+
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 1222223344567888888888766432 22 2235677889999999999999999888653 11
Q ss_pred C-hhHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCC-C-C--HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCc
Q 046775 464 G-IVSWSAMIGGLAQHGRGKEALQMFGQMLED--GVL-P-N--HITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQ 536 (771)
Q Consensus 464 ~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~-p-d--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~ 536 (771)
. +..|..++..|...|++++|..++++.... .+. | . ...+..+...+.+.|++++|..+|....+.+....+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~ 252 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLTTH 252 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTS
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhh
Confidence 1 457888999999999999999999887652 121 2 1 1345666677888999999999888776543222221
Q ss_pred ch-------HHHHHHHHhhcCCHHHHHHHHHhCC---C--CCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 046775 537 EH-------YACMIDILGRAGKFQEAMELVDTMP---F--QANASVWGALLGAARIYKNVEVGQHAAEM 593 (771)
Q Consensus 537 ~~-------y~~lv~~l~r~g~~~eA~~~~~~m~---~--~p~~~~~~~ll~a~~~~~~~~~a~~~~~~ 593 (771)
.. ...++-.....+.-++-...+..-. . .|+...+..++.++ ..+++.....+.+.
T Consensus 253 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~l~~~~~~~~~ 320 (434)
T 4b4t_Q 253 NSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDAMKAVAEAY-NNRSLLDFNTALKQ 320 (434)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHHHHHHHHHH-HHTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhhHHHHHHHHH-HhhhHHHHHHHHHH
Confidence 11 1112222233344444444554332 2 22334555555554 44555555544443
No 190
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.68 E-value=0.00019 Score=64.53 Aligned_cols=95 Identities=15% Similarity=-0.050 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----
Q 046775 434 TFAGNSLVNMYAKCGSIDDADRAFSEIPD-----RG----IVSWSAMIGGLAQHGRGKEALQMFGQMLEDGV-LPN---- 499 (771)
Q Consensus 434 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd---- 499 (771)
..++..+...|...|++++|...|++... .+ ..++..+...|...|++++|++.|++.....- .++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45778889999999999999999987652 22 24788899999999999999999999876310 112
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 046775 500 HITLVSVLCACNHAGLVAEAKHHFESMEK 528 (771)
Q Consensus 500 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 528 (771)
...+..+...+...|++++|..++++..+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 117 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLA 117 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 23566667777888888888888877654
No 191
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.65 E-value=4.2e-05 Score=65.32 Aligned_cols=74 Identities=11% Similarity=0.047 Sum_probs=44.1
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 046775 538 HYACMIDILGRAGKFQEAMELVDTM-PFQAN-ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNI 611 (771)
Q Consensus 538 ~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 611 (771)
.|..+..+|.+.|++++|.+.+++. ...|+ ..+|..+..++...|+.+.|...++++++..|+++........+
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai 104 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAI 104 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 3444444445555555555554443 12333 44666666677777888888888888888888877654433333
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.62 E-value=6.6e-05 Score=77.88 Aligned_cols=113 Identities=12% Similarity=0.005 Sum_probs=90.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhc
Q 046775 502 TLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMPFQANASVWGALLGAARIY 581 (771)
Q Consensus 502 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~ 581 (771)
.+..+...+...|++++|...|++.... .|+.. .+...|+.+++...+. ..+|..+..++...
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~-------~~~~~~~~~~~~~~l~-------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDF-------MFQLYGKYQDMALAVK-------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHH-------HHTCCHHHHHHHHHHH-------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccch-------hhhhcccHHHHHHHHH-------HHHHHHHHHHHHHc
Confidence 4556677788899999999999987754 44422 2344556666655443 13788888888999
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 046775 582 KNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 582 ~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
|+.+.|...++++++++|+++.+|..++.+|...|++++|.+.++...+.
T Consensus 244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999877554
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.62 E-value=0.00011 Score=61.59 Aligned_cols=89 Identities=13% Similarity=0.001 Sum_probs=71.3
Q ss_pred cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------chhHHH
Q 046775 536 QEHYACMIDILGRAGKFQEAMELVDTM-PFQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEK------SSTHVL 607 (771)
Q Consensus 536 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~------~~~~~~ 607 (771)
...+..+...+.+.|++++|.+.+++. ...| +..+|..+..++...|+.+.|...++++++++|++ ...+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 345666777777888888888877765 2344 45688888888899999999999999999999998 778889
Q ss_pred HHHHHHhcCCchhHHHH
Q 046775 608 LSNIYASAGMWDNVAKV 624 (771)
Q Consensus 608 l~~~y~~~g~~~~a~~~ 624 (771)
++.++...|++++|.+.
T Consensus 84 ~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHhHhhhHhH
Confidence 99999998888777544
No 194
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.57 E-value=0.00024 Score=58.55 Aligned_cols=65 Identities=15% Similarity=0.037 Sum_probs=59.5
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 046775 567 NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 567 ~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
+..+|..+...+...|+.+.|...++++++++|+++.+|..|+.+|...|++++|.+.++...+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45688999999999999999999999999999999999999999999999999999998876543
No 195
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.57 E-value=0.00026 Score=74.23 Aligned_cols=112 Identities=7% Similarity=-0.034 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHhHHHHHHHHHH
Q 046775 501 ITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMPFQA-NASVWGALLGAAR 579 (771)
Q Consensus 501 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p-~~~~~~~ll~a~~ 579 (771)
..+..+...+...|++++|+..|++..+.. |.. ...-..+++. ...| +..+|..+..++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~------~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGA------KLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHG------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHH------HHHHHHHHHHHHHHHHHH
Confidence 356667777888888888888887776431 100 0000111111 1233 3457888888999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 046775 580 IYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 580 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
..|+.+.|...++++++++|+++.+|..++.+|...|++++|.+.++...+.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999998877654
No 196
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.55 E-value=0.00054 Score=74.24 Aligned_cols=131 Identities=4% Similarity=-0.074 Sum_probs=89.3
Q ss_pred ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHH
Q 046775 480 RGKEALQMFGQMLEDGVLPNH-ITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMEL 558 (771)
Q Consensus 480 ~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~ 558 (771)
++++|++.|+.... ..|+. ..+..+...+...|++++|...|++..+...-.+... -++..+
T Consensus 249 ~~~~A~~~~~~~~~--~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~--------------~~~~~~- 311 (457)
T 1kt0_A 249 SFEKAKESWEMDTK--EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLS--------------EKESKA- 311 (457)
T ss_dssp EEECCCCGGGSCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC--------------HHHHHH-
T ss_pred hcccCcchhhcCHH--HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCC--------------hHHHHH-
Confidence 33444444443333 23333 3566666677777777777777777665321111100 011110
Q ss_pred HHhCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 046775 559 VDTMPFQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDNK 632 (771)
Q Consensus 559 ~~~m~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 632 (771)
+ .| ...+|..+..++...|+.+.|...++++++++|+++.+|..++.+|...|++++|...++...+..
T Consensus 312 ~-----~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 312 S-----ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp H-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred H-----HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 0 01 135788888889999999999999999999999999999999999999999999999999887653
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.54 E-value=0.00034 Score=55.95 Aligned_cols=81 Identities=17% Similarity=0.248 Sum_probs=62.7
Q ss_pred cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 046775 536 QEHYACMIDILGRAGKFQEAMELVDTM-PFQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYA 613 (771)
Q Consensus 536 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 613 (771)
...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|+.+.|...++++++++|+++.++..++.+|.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 344556666677777777777777665 2334 45578888888889999999999999999999999999999999887
Q ss_pred hcC
Q 046775 614 SAG 616 (771)
Q Consensus 614 ~~g 616 (771)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 198
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.53 E-value=0.00035 Score=56.51 Aligned_cols=68 Identities=12% Similarity=0.048 Sum_probs=60.6
Q ss_pred CCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 046775 566 ANASVWGALLGAARIYKN---VEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDNKL 633 (771)
Q Consensus 566 p~~~~~~~ll~a~~~~~~---~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 633 (771)
+|+.+|..+..+....++ .+.|...++++++++|+++.+..+|++++...|++++|...++.+.+...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 466788888888766655 79999999999999999999999999999999999999999999988754
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.46 E-value=0.00022 Score=60.40 Aligned_cols=77 Identities=10% Similarity=0.006 Sum_probs=63.5
Q ss_pred HHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 046775 555 AMELVDTM-PFQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 555 A~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
|.+.+++. ...| +...|..+...+...|+.+.|...++++++++|+++.+|..++.+|...|++++|...++...+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44444443 3345 45588888888999999999999999999999999999999999999999999999998877653
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.42 E-value=0.00023 Score=77.19 Aligned_cols=114 Identities=12% Similarity=-0.011 Sum_probs=85.7
Q ss_pred HhhcCCHHHHHHHHHhC---------CCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCc---hhHHH
Q 046775 546 LGRAGKFQEAMELVDTM---------PFQANAS-VWGALLGAARIYKNVEVGQHAAEMLFAI-----EPEKS---STHVL 607 (771)
Q Consensus 546 l~r~g~~~eA~~~~~~m---------~~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~l-----~p~~~---~~~~~ 607 (771)
+...|++++|+.++++. +..|+.. +++.|..+|...|+.+.|+..+++++++ .|+++ ..|..
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44667777777776553 2334433 8889999999999999999999999874 55554 45778
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhCCCccCCccceEEEcCEEEEEEeCCCCccchHHHHHHHHHHHHHHHh
Q 046775 608 LSNIYASAGMWDNVAKVRRFMKDNKLKKEPGMSWIEVKDKVYTFTVGDRSHARSKEIYAKLDEVSDLLNK 677 (771)
Q Consensus 608 l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~~~~h~~~~~i~~~l~~l~~~~~~ 677 (771)
|+.+|..+|++++|..+++...+.-.+ +-...||.+.++...|.....++++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLV------------------THGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHH------------------HhCCCChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998876543211 1134699999999888888766654
No 201
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.35 E-value=0.00029 Score=75.23 Aligned_cols=113 Identities=12% Similarity=0.125 Sum_probs=77.8
Q ss_pred HhhcCCHHHHHHHHHhC------CCCC---CH-hHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCc---hhHHH
Q 046775 546 LGRAGKFQEAMELVDTM------PFQA---NA-SVWGALLGAARIYKNVEVGQHAAEMLFAI-----EPEKS---STHVL 607 (771)
Q Consensus 546 l~r~g~~~eA~~~~~~m------~~~p---~~-~~~~~ll~a~~~~~~~~~a~~~~~~~~~l-----~p~~~---~~~~~ 607 (771)
+.+.|++++|++++++. .+.| +. .+++.|..+|...|+.++|+..+++++++ .|+++ ..|..
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 34455555555555433 0222 22 26777777788888888888888877763 44444 45778
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhCCCccCCccceEEEcCEEEEEEeCCCCccchHHHHHHHHHHHHHHH
Q 046775 608 LSNIYASAGMWDNVAKVRRFMKDNKLKKEPGMSWIEVKDKVYTFTVGDRSHARSKEIYAKLDEVSDLLN 676 (771)
Q Consensus 608 l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~~~~h~~~~~i~~~l~~l~~~~~ 676 (771)
|+.+|..+|++++|..++++..+--.+ +-...||...+++..|++...+|+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 999999999999999988776543111 113469999999999999888876
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.31 E-value=0.0001 Score=65.55 Aligned_cols=49 Identities=18% Similarity=0.236 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC-----------CchhHHHHHHHHHhCC
Q 046775 584 VEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAG-----------MWDNVAKVRRFMKDNK 632 (771)
Q Consensus 584 ~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g-----------~~~~a~~~~~~m~~~g 632 (771)
++.|+..++++++++|+++.+|..|+++|.+.| ++++|.+.+++..+..
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 679999999999999999999999999999885 8999999998887654
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.23 E-value=0.00031 Score=62.45 Aligned_cols=104 Identities=13% Similarity=0.034 Sum_probs=61.3
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHH----------HHHHHHHHHHHhhCCCCC-cchHHHHH
Q 046775 476 AQHGRGKEALQMFGQMLEDGVLPN-HITLVSVLCACNHAGLVA----------EAKHHFESMEKKFGIQPM-QEHYACMI 543 (771)
Q Consensus 476 ~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~----------~a~~~~~~m~~~~~i~p~-~~~y~~lv 543 (771)
.+.+++++|++.+++..+ ..|+ ...+..+..++...|.++ +|+..|++..+ +.|+ ...|.++.
T Consensus 13 ~r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~---ldP~~~~A~~~LG 87 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH---hCcCcHHHHHHHH
Confidence 455667777777777777 3453 446666666666665543 55555554442 2343 33444444
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhH
Q 046775 544 DILGRAGKFQEAMELVDTMPFQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTH 605 (771)
Q Consensus 544 ~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~ 605 (771)
.+|...|++ .|+.. ...|+++.|...++++++++|++....
T Consensus 88 ~ay~~lg~l------------~P~~~---------~a~g~~~eA~~~~~kAl~l~P~~~~y~ 128 (158)
T 1zu2_A 88 NAYTSFAFL------------TPDET---------EAKHNFDLATQFFQQAVDEQPDNTHYL 128 (158)
T ss_dssp HHHHHHHHH------------CCCHH---------HHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHhccc------------Ccchh---------hhhccHHHHHHHHHHHHHhCCCCHHHH
Confidence 444443332 22221 112689999999999999999876443
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.0003 Score=58.80 Aligned_cols=94 Identities=17% Similarity=0.139 Sum_probs=63.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-------c
Q 046775 465 IVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLP-NHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-------Q 536 (771)
Q Consensus 465 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-------~ 536 (771)
...|..+...+...|++++|++.|++.++. .| +...+..+..++...|++++|+..|++.. .+.|+ .
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~~ 78 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL---RYTSTAEHVAIRS 78 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TSCSSTTSHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhCCCccHHHHHH
Confidence 446677777778888888888888888773 44 45567777777888888888888888776 34555 3
Q ss_pred chHHHHHHHHhhcCCHHHHHHHHHhCC
Q 046775 537 EHYACMIDILGRAGKFQEAMELVDTMP 563 (771)
Q Consensus 537 ~~y~~lv~~l~r~g~~~eA~~~~~~m~ 563 (771)
..+..+..++...|+.++|.+.++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 344455555556666666655555543
No 205
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.15 E-value=0.0003 Score=74.93 Aligned_cols=83 Identities=11% Similarity=0.035 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCC---chhHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCCccce
Q 046775 570 VWGALLGAARIYKNVEVGQHAAEMLFAI-----EPEK---SSTHVLLSNIYASAGMWDNVAKVRRFMKDNKLKKEPGMSW 641 (771)
Q Consensus 570 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l-----~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~ 641 (771)
+++.|..+|...|+.+.|+..+++++++ .|++ ...|..|+.+|..+|++++|..++++..+--.+
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~------- 414 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEV------- 414 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-------
Confidence 5666777777777777777777777663 4444 445778999999999999999988776543211
Q ss_pred EEEcCEEEEEEeCCCCccchHHHHHHHHH
Q 046775 642 IEVKDKVYTFTVGDRSHARSKEIYAKLDE 670 (771)
Q Consensus 642 i~~~~~~~~f~~~~~~h~~~~~i~~~l~~ 670 (771)
.-...||...+++..|++
T Consensus 415 -----------~lG~~Hp~~~~l~~~l~~ 432 (433)
T 3qww_A 415 -----------AHGKDHPYISEIKQEIES 432 (433)
T ss_dssp -----------HTCTTCHHHHHHHHHHHC
T ss_pred -----------HcCCCChHHHHHHHHHhc
Confidence 113469999888877653
No 206
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.08 E-value=0.0085 Score=61.14 Aligned_cols=141 Identities=13% Similarity=0.129 Sum_probs=72.5
Q ss_pred CCChhHHHHHHHHHHH--cCC---hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC
Q 046775 462 DRGIVSWSAMIGGLAQ--HGR---GKEALQMFGQMLEDGVLPNHI-TLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM 535 (771)
Q Consensus 462 ~~~~~~~~~li~~~~~--~g~---~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~ 535 (771)
..+...|...+.+... .+. ..+|+.+|++.++ ..|+.. .+..+..++.. ...++ |.
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~--------------~~~~~--~~ 252 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIV--------------RHSQH--PL 252 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH--------------HHHHS--CC
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH--------------HhccC--CC
Confidence 3466677776665432 232 4789999999998 678754 44444333320 00001 11
Q ss_pred cchHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 046775 536 QEHYACMIDILGRAGKFQEAMELVDTMPFQA-NASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYAS 614 (771)
Q Consensus 536 ~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 614 (771)
... +...+.+|.+-...++..| ++.+|.++.-.....|+.+.|...++++++++| +..+|+.++.++.-
T Consensus 253 ~~~---------~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~ 322 (372)
T 3ly7_A 253 DEK---------QLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEM 322 (372)
T ss_dssp CHH---------HHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred chh---------hHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 000 0001122333223333222 334555554445555666666666666666665 45556666666666
Q ss_pred cCCchhHHHHHHHHHh
Q 046775 615 AGMWDNVAKVRRFMKD 630 (771)
Q Consensus 615 ~g~~~~a~~~~~~m~~ 630 (771)
.|++++|.+.++....
T Consensus 323 ~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 323 KGMNREAADAYLTAFN 338 (372)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 6666666666554443
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.98 E-value=0.0056 Score=53.66 Aligned_cols=111 Identities=8% Similarity=-0.129 Sum_probs=63.8
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHH
Q 046775 479 GRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMEL 558 (771)
Q Consensus 479 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~ 558 (771)
++.++|++.|++..+.| .|+.. +...|...+.+++|.++|++..+.
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----------------------------- 54 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----------------------------- 54 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT-----------------------------
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC-----------------------------
Confidence 34556666666666655 33332 444444455555555555555432
Q ss_pred HHhCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh----cCCchhHHHHHHHHHh
Q 046775 559 VDTMPFQANASVWGALLGAARI----YKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYAS----AGMWDNVAKVRRFMKD 630 (771)
Q Consensus 559 ~~~m~~~p~~~~~~~ll~a~~~----~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~ 630 (771)
-++..+..|...+.. .+|.+.|...++++.+. .++.++..|+.+|.. .+++++|.+.+++..+
T Consensus 55 -------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 55 -------NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp -------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred -------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 233333344444433 45666666666666655 466777777777777 7777777777777766
Q ss_pred CC
Q 046775 631 NK 632 (771)
Q Consensus 631 ~g 632 (771)
.|
T Consensus 126 ~g 127 (138)
T 1klx_A 126 LG 127 (138)
T ss_dssp TT
T ss_pred CC
Confidence 65
No 208
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.92 E-value=0.0083 Score=66.52 Aligned_cols=147 Identities=13% Similarity=0.043 Sum_probs=116.9
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCc----------HHHHHHHHHHHHHhhCCCCC-cchHHHHHHH
Q 046775 478 HGRGKEALQMFGQMLEDGVLPNHI-TLVSVLCACNHAGL----------VAEAKHHFESMEKKFGIQPM-QEHYACMIDI 545 (771)
Q Consensus 478 ~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~ 545 (771)
....++|++.+++++. +.|+.. .|+.--.++.+.|. +++++++++.+.+. .|. ...|..-.-+
T Consensus 42 ~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 42 GELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRCWL 116 (567)
T ss_dssp TCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 3445789999999999 678766 45555555666666 99999999999865 555 5567777778
Q ss_pred HhhcC--CHHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc-----
Q 046775 546 LGRAG--KFQEAMELVDTMP-FQA-NASVWGALLGAARIYK-NVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASA----- 615 (771)
Q Consensus 546 l~r~g--~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~~-~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~----- 615 (771)
+.+.| ++++|+++++++- ..| |..+|+.-.......| ..+.+...++++++.+|+|..+|...+.++...
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 88899 7799999999983 455 5669999988888888 899999999999999999999999999998874
Q ss_pred ---------CCchhHHHHHHHHH
Q 046775 616 ---------GMWDNVAKVRRFMK 629 (771)
Q Consensus 616 ---------g~~~~a~~~~~~m~ 629 (771)
++++++.+..+...
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai 219 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAF 219 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHH
Confidence 45667766655443
No 209
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.83 E-value=0.0031 Score=50.15 Aligned_cols=64 Identities=16% Similarity=0.181 Sum_probs=58.6
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 046775 568 ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 568 ~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
...|..+...+...|+.+.|...++++++++|+++..+..++.+|...|++++|.+.++...+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4578888888999999999999999999999999999999999999999999999998877654
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.80 E-value=0.0081 Score=61.27 Aligned_cols=71 Identities=13% Similarity=0.029 Sum_probs=48.1
Q ss_pred HHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCCcc-ceEEEcCEEEEEEeCCCCccchHHHHHHHHHH
Q 046775 593 MLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDNKLKKEPGM-SWIEVKDKVYTFTVGDRSHARSKEIYAKLDEV 671 (771)
Q Consensus 593 ~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~-s~i~~~~~~~~f~~~~~~h~~~~~i~~~l~~l 671 (771)
..++++|.++..|..++.++...|++++|....+.+...+ |.. +| ...|+++. ..|+ +.+..+.|.+--+|
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln----~s~~a~-~llG~~~~-~~G~--~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE----MSWLNY-VLLGKVYE-MKGM--NREAADAYLTAFNL 339 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----CCHHHH-HHHHHHHH-HTTC--HHHHHHHHHHHHHH
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC----CCHHHH-HHHHHHHH-HCCC--HHHHHHHHHHHHhc
Confidence 3457789999999999999999999999999999888775 321 22 23344443 2333 44555555554444
No 211
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.63 E-value=0.01 Score=52.03 Aligned_cols=109 Identities=11% Similarity=-0.007 Sum_probs=54.6
Q ss_pred ChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHH
Q 046775 379 LGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAK----CGSIDDAD 454 (771)
Q Consensus 379 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~ 454 (771)
++++|++.|++..+.| .|+.. +-..+......++|...+....+.| ++.....|..+|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4556666666665554 22222 3344444445555555555555543 34445555555555 45555555
Q ss_pred HHHhhCC-CCChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCC
Q 046775 455 RAFSEIP-DRGIVSWSAMIGGLAQ----HGRGKEALQMFGQMLEDG 495 (771)
Q Consensus 455 ~~f~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g 495 (771)
+.|++.. ..+..++..|...|.. .++.++|++.|++..+.|
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555443 2234444445444544 455555555555555443
No 212
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.60 E-value=0.0042 Score=50.87 Aligned_cols=61 Identities=15% Similarity=0.125 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 046775 465 IVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPN-HITLVSVLCACNHAGLVAEAKHHFESME 527 (771)
Q Consensus 465 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 527 (771)
...|..+...|...|++++|+..|++.++. .|+ ...+..+..++...|++++|.+.|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445555555666666666666666665552 333 3345555555556666666666655544
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.56 E-value=0.011 Score=62.96 Aligned_cols=67 Identities=12% Similarity=0.115 Sum_probs=36.6
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC---------CCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCch
Q 046775 539 YACMIDILGRAGKFQEAMELVDTM---------PFQANAS-VWGALLGAARIYKNVEVGQHAAEMLFA-----IEPEKSS 603 (771)
Q Consensus 539 y~~lv~~l~r~g~~~eA~~~~~~m---------~~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~-----l~p~~~~ 603 (771)
++.+..+|...|++++|+.++++. |..|+.. .++.|...+...|+.++|+..++++++ +.|++|.
T Consensus 343 ~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~ 422 (433)
T 3qww_A 343 MYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPY 422 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 344444444444444444444332 2334433 566666667777777777777777665 3676665
Q ss_pred hH
Q 046775 604 TH 605 (771)
Q Consensus 604 ~~ 605 (771)
+-
T Consensus 423 ~~ 424 (433)
T 3qww_A 423 IS 424 (433)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 214
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.45 E-value=0.0095 Score=49.98 Aligned_cols=61 Identities=18% Similarity=0.075 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 046775 465 IVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPN-HITLVSVLCACNHAGLVAEAKHHFESME 527 (771)
Q Consensus 465 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 527 (771)
...|..+...|...|++++|+..|++.++. .|+ ...+..+..++...|+.++|...|+...
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555555555555555555555555542 232 2344445555555555555555555544
No 215
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.42 E-value=0.0029 Score=65.72 Aligned_cols=237 Identities=11% Similarity=0.039 Sum_probs=158.9
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhc
Q 046775 29 DEFVANSLVVMYAKCGNFIDSRRLFDAIPERSVVSWNSLFSCYVHCDFLEEAVCFFKEMVLSGIRPNEFSLSSMINACAG 108 (771)
Q Consensus 29 ~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 108 (771)
.+.+|..|-.++.+.|.+.+|...| +...|+..|..+|.+..+.|.+++-+.++.-.++. .-++..=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHh
Confidence 4667888888888888888887665 45567778888999999999999988888766554 2344555678888988
Q ss_pred CCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHccCCC------------------------CCccc
Q 046775 109 SGDSLLGRKIHGYSIKLGYDSDMFSANALVDMYAKVGNLEDAVAVFKDIEH------------------------PDIVS 164 (771)
Q Consensus 109 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~------------------------~~~~~ 164 (771)
.+++.+-.++.. .|+..-.....+-+...|.++.|.-+|..++. .++.+
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 888765444332 46666666677777788888888888877652 46778
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhcCCcHHHHHHHHHHHHHccCC-CChhHHHHHHHhhh
Q 046775 165 WNAVIAGCVLHEHNDWALKLFQQMKSSEINPNMFTYTSALKACAGMELKELGRQLHCSLIKMEIK-SDPIVGVGLVDMYA 243 (771)
Q Consensus 165 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~-~~~~~~~~Li~~y~ 243 (771)
|-.+-.+|+..+.+.-|.-.--.+.- .|| ....++.-|-..|.+++-..+++.-+ |++ ....+++-|.-.|+
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYs 274 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYS 274 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHH
Confidence 99999999998888776544333331 222 22334555666777766666665544 332 35667788888888
Q ss_pred cCCChHHHHHHhhhCC----CC-------CeehHHHHHHHHHhCCChhHHHH
Q 046775 244 KCGSMDEARMIFHLMP----EK-------NLIAWNIVISGHLQNGGDMEAAS 284 (771)
Q Consensus 244 ~~g~~~~A~~~f~~m~----~~-------~~~~~~~li~~~~~~g~~~~A~~ 284 (771)
|- +.++-.+-++... -| ....|.-++-.|.+..+++.|..
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 76 3333333332221 12 34468888888888777776654
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.37 E-value=0.02 Score=60.90 Aligned_cols=110 Identities=15% Similarity=0.048 Sum_probs=61.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHH
Q 046775 472 IGGLAQHGRGKEALQMFGQMLED---GVLPNH----ITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMID 544 (771)
Q Consensus 472 i~~~~~~g~~~~A~~l~~~m~~~---g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~ 544 (771)
+..+.+.|++++|++++++.++. -+.|++ .+++.+..+|...|++++|..++++..+.+...-.
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg--------- 364 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFP--------- 364 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSC---------
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcC---------
Confidence 45556677777777777777652 133443 24666666777777777777776665433210000
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCchhHHHH
Q 046775 545 ILGRAGKFQEAMELVDTMPFQANAS-VWGALLGAARIYKNVEVGQHAAEMLFA-----IEPEKSSTHVLL 608 (771)
Q Consensus 545 ~l~r~g~~~eA~~~~~~m~~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~-----l~p~~~~~~~~l 608 (771)
|..|+.. .++.|...+...|+.+.|+..++++++ +.|++|.+-.++
T Consensus 365 ------------------~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~ 416 (429)
T 3qwp_A 365 ------------------GSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLI 416 (429)
T ss_dssp ------------------SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred ------------------CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 1233322 455555555556666666666665555 467666654443
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.36 E-value=0.015 Score=47.07 Aligned_cols=64 Identities=11% Similarity=0.176 Sum_probs=48.7
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC-CCC-CHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhH
Q 046775 542 MIDILGRAGKFQEAMELVDTMP-FQA-NAS-VWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTH 605 (771)
Q Consensus 542 lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~ 605 (771)
.+..+.+.|++++|.+.+++.- ..| +.. +|..+..++...|+.+.|...++++++++|+++.++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 3456667777788777777652 344 345 777777788888999999999999999999888776
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.18 E-value=0.01 Score=48.03 Aligned_cols=59 Identities=17% Similarity=0.216 Sum_probs=52.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCch-hHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 046775 574 LLGAARIYKNVEVGQHAAEMLFAIEPEKSS-THVLLSNIYASAGMWDNVAKVRRFMKDNK 632 (771)
Q Consensus 574 ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~-~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 632 (771)
....+...|+.+.|...++++++++|+++. .+..++.+|...|++++|.+.++...+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 344567889999999999999999999999 99999999999999999999998876553
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.13 E-value=0.1 Score=60.85 Aligned_cols=48 Identities=19% Similarity=0.196 Sum_probs=28.2
Q ss_pred HHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 046775 443 MYAKCGSIDDADRAFSEIPDRGIVSWSAMIGGLAQHGRGKEALQMFGQML 492 (771)
Q Consensus 443 ~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 492 (771)
....+|++++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.
T Consensus 661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 3445566666666655543 33556666666666666666666666553
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.04 E-value=0.16 Score=59.19 Aligned_cols=103 Identities=17% Similarity=0.082 Sum_probs=69.8
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHH
Q 046775 341 DAYGKCGHVEDAVKIFKESSAVDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQ 420 (771)
Q Consensus 341 ~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 420 (771)
.....+|+++.|.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...++.+....
T Consensus 660 ~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred ehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 34567888888888877664 446889999999999999999999988764 3344444445666666555
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 046775 421 VHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEI 460 (771)
Q Consensus 421 i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~ 460 (771)
+-..+...| -++.-..+|.++|++++|.+++.++
T Consensus 729 ~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 729 LAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 555555544 1233445577788888887765544
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.62 E-value=0.14 Score=44.77 Aligned_cols=94 Identities=14% Similarity=-0.005 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHH
Q 046775 482 KEALQMFGQMLEDGVLPNHITLVSVLCACNHAG---LVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMEL 558 (771)
Q Consensus 482 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~ 558 (771)
..+.+-|++....|. ++..+-..+..++.+++ ++++|+.+|+...+.. .|+ .
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~-~--------------------- 69 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKE-E--------------------- 69 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHH-H---------------------
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--Ccc-c---------------------
Confidence 445555665555543 66666666777777777 6668888877776541 121 0
Q ss_pred HHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 046775 559 VDTMPFQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLL 608 (771)
Q Consensus 559 ~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l 608 (771)
+...+-.|.-++.+.||++.|.+.++++++++|+|..+..+.
T Consensus 70 --------~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 70 --------QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp --------HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred --------hHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 122345566677889999999999999999999887765544
No 222
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.52 E-value=0.043 Score=53.61 Aligned_cols=86 Identities=12% Similarity=0.102 Sum_probs=65.6
Q ss_pred HHHHHHHHhC-CCCCC---HhHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHhc-CCchhH
Q 046775 553 QEAMELVDTM-PFQAN---ASVWGALLGAARI-----YKNVEVGQHAAEMLFAIEPEK-SSTHVLLSNIYASA-GMWDNV 621 (771)
Q Consensus 553 ~eA~~~~~~m-~~~p~---~~~~~~ll~a~~~-----~~~~~~a~~~~~~~~~l~p~~-~~~~~~l~~~y~~~-g~~~~a 621 (771)
.+|...+++. .+.|+ ...|..|...+.. -|+.+.|+..++++++++|+. ..+++..+..|+.. |+.+++
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 3344444333 24555 3466666666665 489999999999999999975 99999999999884 999999
Q ss_pred HHHHHHHHhCCCccCCc
Q 046775 622 AKVRRFMKDNKLKKEPG 638 (771)
Q Consensus 622 ~~~~~~m~~~g~~k~~g 638 (771)
.+..++......+..|+
T Consensus 260 ~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 260 DEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHcCCCCCCCC
Confidence 99999988887766565
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.26 E-value=0.094 Score=45.95 Aligned_cols=90 Identities=16% Similarity=0.068 Sum_probs=68.2
Q ss_pred CCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-C-CCchhHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCCccc
Q 046775 566 ANASVWGALLGAARIYK---NVEVGQHAAEMLFAIE-P-EKSSTHVLLSNIYASAGMWDNVAKVRRFMKDNKLKKEPGMS 640 (771)
Q Consensus 566 p~~~~~~~ll~a~~~~~---~~~~a~~~~~~~~~l~-p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s 640 (771)
++..+...+..+....+ ++++|...++.+++.+ | ++...+..|+-.|++.|++++|.+..+...+. +|+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i----eP~-- 103 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT----EPQ-- 103 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH----CTT--
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc----CCC--
Confidence 56667777777777766 6779999999999998 7 56788889999999999999999999887654 232
Q ss_pred eEEEcCEEEEEEeCCCCccchHHHHHHHHHHHHHHHhcCcc
Q 046775 641 WIEVKDKVYTFTVGDRSHARSKEIYAKLDEVSDLLNKAGYV 681 (771)
Q Consensus 641 ~i~~~~~~~~f~~~~~~h~~~~~i~~~l~~l~~~~~~~g~~ 681 (771)
|++. ....+.+..++++.|.+
T Consensus 104 -----------------n~QA---~~Lk~~ie~~~~kdgl~ 124 (152)
T 1pc2_A 104 -----------------NNQA---KELERLIDKAMKKDGLV 124 (152)
T ss_dssp -----------------CHHH---HHHHHHHHHHHHHTTCC
T ss_pred -----------------CHHH---HHHHHHHHHHHHHhhHH
Confidence 4444 44445556677777765
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.24 E-value=0.085 Score=43.24 Aligned_cols=71 Identities=11% Similarity=0.046 Sum_probs=49.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC---------CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 046775 539 YACMIDILGRAGKFQEAMELVDTMP---------FQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLS 609 (771)
Q Consensus 539 y~~lv~~l~r~g~~~eA~~~~~~m~---------~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 609 (771)
+-.|...+.+.|+++.|...++..- -.+...++..|..++...|+.+.|...++++++++|+++.+...+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 3344455555555555555554430 1234558888889999999999999999999999999987755443
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.76 E-value=0.65 Score=41.71 Aligned_cols=129 Identities=12% Similarity=0.097 Sum_probs=72.2
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 046775 442 NMYAKCGSIDDADRAFSEIPDRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKH 521 (771)
Q Consensus 442 ~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 521 (771)
+...++|+++.|.++-+.+ .+...|..+......+|+.+-|.+.|.+... |..++--|.-.|+.+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445677777777776655 3456777777777777777777777776544 3344444445565544443
Q ss_pred HHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 046775 522 HFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMPFQANASVWGALLGAARIYKNVEVGQHAAEML 594 (771)
Q Consensus 522 ~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~ 594 (771)
+-+..... .-++.-...+.-.|+++++.+++.+...-|.+. -..+.+|-.+.|.++.+.+
T Consensus 82 la~iA~~~-------g~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-------EDFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-------TCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-------ccHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 32222211 113333344445677777777766654222211 1224567777777665544
No 226
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.47 E-value=0.0038 Score=64.90 Aligned_cols=210 Identities=13% Similarity=0.109 Sum_probs=147.4
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCCChhhHHHHHH
Q 046775 60 SVVSWNSLFSCYVHCDFLEEAVCFFKEMVLSGIRPNEFSLSSMINACAGSGDSLLGRKIHGYSIKLGYDSDMFSANALVD 139 (771)
Q Consensus 60 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 139 (771)
.+..|..|..+....++..+|++-|-+ .-|+..|..++.++.+.|.+++-...+....+. ..++.+-+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 455799999999999999999887743 236778999999999999999988888766655 455667789999
Q ss_pred HHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCC--------------------CCCChhh
Q 046775 140 MYAKVGNLEDAVAVFKDIEHPDIVSWNAVIAGCVLHEHNDWALKLFQQMKSSE--------------------INPNMFT 199 (771)
Q Consensus 140 ~y~~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g--------------------~~p~~~t 199 (771)
+|+|.+++.+-.+++ ..||+.--..+-.-|...|.++.|.-+|..+..-. -.-+..|
T Consensus 125 ayAk~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp HHHTSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred HHHhhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 999999987644333 23777777778888888888888877776542210 1235678
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHccCCCChhHHHHHHHhhhcCCChHHHHHHhhhCC---CCCeehHHHHHHHHHhC
Q 046775 200 YTSALKACAGMELKELGRQLHCSLIKMEIKSDPIVGVGLVDMYAKCGSMDEARMIFHLMP---EKNLIAWNIVISGHLQN 276 (771)
Q Consensus 200 ~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~ 276 (771)
|-.+-.+|...+.+..|...--.++-..-. ...|+..|-+.|.+++-..+++.-. ....-.++-|.-.|++-
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIvhade-----L~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVVHADE-----LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 276 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHCCSSC-----CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcccHHH-----HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc
Confidence 888888998888887766554444432211 1236777888888888777776543 24455666666666654
Q ss_pred CChhHHHHHH
Q 046775 277 GGDMEAASLF 286 (771)
Q Consensus 277 g~~~~A~~~~ 286 (771)
++++-++.+
T Consensus 277 -~PeKlmEHl 285 (624)
T 3lvg_A 277 -KPQKMREHL 285 (624)
T ss_dssp -CTTHHHHHH
T ss_pred -CHHHHHHHH
Confidence 344444443
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.23 E-value=2.1 Score=38.45 Aligned_cols=104 Identities=13% Similarity=0.010 Sum_probs=67.5
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHH
Q 046775 341 DAYGKCGHVEDAVKIFKESSAVDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQ 420 (771)
Q Consensus 341 ~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 420 (771)
+...++|+++.|.++-+++ .+...|..+.....+.|+++-|.+.|.+... +..++-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445788888888888776 4566899999999999999999999888764 3344444555666655555
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 046775 421 VHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIP 461 (771)
Q Consensus 421 i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~ 461 (771)
+-......| . ++.-...|.-.|+++++.++|.+..
T Consensus 82 la~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 82 MQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 544444444 1 2333334445677777766665544
No 228
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.11 E-value=0.4 Score=46.85 Aligned_cols=112 Identities=13% Similarity=0.104 Sum_probs=76.6
Q ss_pred hcCCHHHHHHHHhhCCCCCh--hHHHHHHH-HHHHc--C------ChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHh
Q 046775 446 KCGSIDDADRAFSEIPDRGI--VSWSAMIG-GLAQH--G------RGKEALQMFGQMLEDGVLPN---HITLVSVLCACN 511 (771)
Q Consensus 446 k~g~~~~A~~~f~~~~~~~~--~~~~~li~-~~~~~--g------~~~~A~~l~~~m~~~g~~pd---~~t~~~ll~a~~ 511 (771)
+.|+..+-.+.+.+..+.++ ..|..++. +++.. | ...+|..++++.++ +.|+ ...+..+...|.
T Consensus 133 ~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~ 210 (301)
T 3u64_A 133 FSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYA 210 (301)
T ss_dssp TSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHH
T ss_pred HhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHH
Confidence 34555555566666664443 56777765 33442 3 24677888888888 6787 446777777777
Q ss_pred c-----cCcHHHHHHHHHHHHHhhCCCCC--cchHHHHHHHHhhc-CCHHHHHHHHHhC
Q 046775 512 H-----AGLVAEAKHHFESMEKKFGIQPM--QEHYACMIDILGRA-GKFQEAMELVDTM 562 (771)
Q Consensus 512 ~-----~g~~~~a~~~~~~m~~~~~i~p~--~~~y~~lv~~l~r~-g~~~eA~~~~~~m 562 (771)
. .|+.++|.++|++..+. .|+ ..++....+.|++. |+.++|.+.+++.
T Consensus 211 ~vPp~~gGd~ekA~~~ferAL~L---nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 211 AAPESFGGGMEKAHTAFEHLTRY---CSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp HSCTTTTCCHHHHHHHHHHHHHH---CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred hCCCccCCCHHHHHHHHHHHHHh---CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 7 48899999999888754 673 67777778888774 7788777777764
No 229
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.09 E-value=0.16 Score=40.60 Aligned_cols=67 Identities=10% Similarity=0.010 Sum_probs=48.6
Q ss_pred CCcchHHHHHHHHhhcCC---HHHHHHHHHhC-CCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 046775 534 PMQEHYACMIDILGRAGK---FQEAMELVDTM-PFQANAS-VWGALLGAARIYKNVEVGQHAAEMLFAIEPE 600 (771)
Q Consensus 534 p~~~~y~~lv~~l~r~g~---~~eA~~~~~~m-~~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 600 (771)
++.+.+..+..++...+. .++|..++++. ...|+.. .+..|.......|+++.|...++++++.+|+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 446667777777755444 67888877776 3566544 6666666778888888898888999888887
No 230
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.99 E-value=0.13 Score=58.00 Aligned_cols=53 Identities=6% Similarity=-0.070 Sum_probs=49.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHH
Q 046775 576 GAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFM 628 (771)
Q Consensus 576 ~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 628 (771)
.-|...|+.+.|..++++++..-|.+..+|..|+.+|...|+|+.|.-....+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 35677899999999999999999999999999999999999999999988877
No 231
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.91 E-value=2.6 Score=35.63 Aligned_cols=140 Identities=9% Similarity=0.026 Sum_probs=92.9
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHH
Q 046775 476 AQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEA 555 (771)
Q Consensus 476 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA 555 (771)
...|..++..++..+.... .+..-++.++.-...+-+-+-..+.++++-+.|.+.|-.. .-.+|..|.+.|...|
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~N-lKrVi~C~~~~n~~se- 92 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQN-LKSVVECGVINNTLNE- 92 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSC-THHHHHHHHHTTCCCH-
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhc-HHHHHHHHHHhcchHH-
Confidence 4457777778888777663 2333455555444444455556666777766665554321 2334445555444322
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 046775 556 MELVDTMPFQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDNKLK 634 (771)
Q Consensus 556 ~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~ 634 (771)
...--|.....+|.-+.-..+...++.-+|-+|...+-++++|.+.|+..++.+++++.-++|++
T Consensus 93 --------------~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 93 --------------HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp --------------HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred --------------HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 23334566677888888888888865556668999999999999999999999999999999985
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.44 E-value=2.1 Score=35.95 Aligned_cols=39 Identities=18% Similarity=0.045 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 046775 571 WGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLS 609 (771)
Q Consensus 571 ~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 609 (771)
.-.|.-++.+.|+++.|.+..+.+++.+|+|..+..+..
T Consensus 77 lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~ 115 (126)
T 1nzn_A 77 VFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELER 115 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 344566888999999999999999999998887765543
No 233
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.79 E-value=28 Score=40.15 Aligned_cols=150 Identities=15% Similarity=0.107 Sum_probs=69.9
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC--Cc-eecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHh-hHH---HHHHHhhcc
Q 046775 340 IDAYGKCGHVEDAVKIFKESSA--VD-LVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSF-VCS---SLLNACANL 412 (771)
Q Consensus 340 i~~y~k~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~---~ll~a~~~~ 412 (771)
.-.|.-.|+-+....++..+.+ .+ +.-.-++.-|+...|+.+.+-.+.+.+... .++. -|. ++.-+|+..
T Consensus 497 Gli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGT 573 (963)
T 4ady_A 497 GLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGT 573 (963)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTS
T ss_pred hhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCC
Confidence 3344455665555555544321 11 111222233444567777666666666542 2222 122 233356667
Q ss_pred cchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCChhHH--HHHHHHHHHcCCh-HHHHHHH
Q 046775 413 SAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIP-DRGIVSW--SAMIGGLAQHGRG-KEALQMF 488 (771)
Q Consensus 413 ~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~-~~~~~~~--~~li~~~~~~g~~-~~A~~l~ 488 (771)
|+.....+++..+.... ..++.-.-.+.-+..-.|+.+.+.++++.+. ..|...- -++.-|....|.+ .+|+.++
T Consensus 574 Gn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L 652 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVL 652 (963)
T ss_dssp CCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHH
T ss_pred CCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 77666666666665532 2222222222222223566555666665443 2333222 2233333344443 4677777
Q ss_pred HHHHH
Q 046775 489 GQMLE 493 (771)
Q Consensus 489 ~~m~~ 493 (771)
..+..
T Consensus 653 ~~L~~ 657 (963)
T 4ady_A 653 DPLTK 657 (963)
T ss_dssp HHHHT
T ss_pred HHHcc
Confidence 77754
No 234
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=89.55 E-value=28 Score=38.32 Aligned_cols=260 Identities=9% Similarity=0.021 Sum_probs=134.4
Q ss_pred HHHhHHHHHHHhcCCHHHHHHHHHhcCCCceecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhccc
Q 046775 334 YIVNSLIDAYGKCGHVEDAVKIFKESSAVDLVACTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLS 413 (771)
Q Consensus 334 ~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 413 (771)
..-+.-+..+++.+++.....++.. +..+...-.....+....|+..+|....+.+-..| ...+.....++....+.|
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g 150 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASG 150 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCC
Confidence 3344556667777788877776665 33444444455666777788777877777766554 233344455555555433
Q ss_pred chHHH--HHHHHHHHHh-----------CCCCc-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChh---HHHHHHHHHH
Q 046775 414 AYEQG--KQVHVHIIKF-----------GFMSD-TFAGNSLVNMYAKCGSIDDADRAFSEIPDRGIV---SWSAMIGGLA 476 (771)
Q Consensus 414 ~~~~a--~~i~~~~~~~-----------g~~~~-~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~ 476 (771)
.+... .+=...+... .++++ ......++..+.+-..+. ...... .++.. ....-+.-++
T Consensus 151 ~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~---~~~~~~-~~~~~~~~~~~~~~~rla 226 (618)
T 1qsa_A 151 KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVL---TFARTT-GATDFTRQMAAVAFASVA 226 (618)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHH---HHHHHS-CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHH---HHHhcc-CCChhhHHHHHHHHHHHH
Confidence 32221 1111111111 11122 122333443333322222 222221 11111 1111223333
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCH
Q 046775 477 QHGRGKEALQMFGQMLEDGVLPNHITLV----SVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKF 552 (771)
Q Consensus 477 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~----~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~ 552 (771)
+. +.+.|..+|......+ ..+..... .+.......+...++...+...... .++.....-.+....|.|++
T Consensus 227 r~-d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~ 301 (618)
T 1qsa_A 227 RQ-DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDR 301 (618)
T ss_dssp HH-CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCH
T ss_pred hc-CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCH
Confidence 33 7789999998887543 22332222 2222333445355666677765432 23333333444455578999
Q ss_pred HHHHHHHHhCCCCC-CHhHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 046775 553 QEAMELVDTMPFQA-NASVWGA-LLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLL 608 (771)
Q Consensus 553 ~eA~~~~~~m~~~p-~~~~~~~-ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l 608 (771)
+.|...|+.|+-.+ +..-|.- +..+....|+.+.|...++++.+ + ...|-.|
T Consensus 302 ~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~--~~fYg~l 355 (618)
T 1qsa_A 302 RGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--Q--RGFYPMV 355 (618)
T ss_dssp HHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--S--CSHHHHH
T ss_pred HHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CChHHHH
Confidence 99999999997543 2233322 22355678999999999999875 3 2456555
No 235
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=88.70 E-value=8 Score=33.07 Aligned_cols=72 Identities=7% Similarity=-0.039 Sum_probs=37.0
Q ss_pred CCCcchHHHHHHHHhhcCCHH---HHHHHHHhCC-CCC-CHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh
Q 046775 533 QPMQEHYACMIDILGRAGKFQ---EAMELVDTMP-FQA-NAS-VWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSST 604 (771)
Q Consensus 533 ~p~~~~y~~lv~~l~r~g~~~---eA~~~~~~m~-~~p-~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 604 (771)
.|+..+--.+.-+|.++...+ +++.++++.- ..| +.. ..--|.-++.+.||++.|.+..+.+++.+|+|..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 455555555555666665543 3444444431 122 111 23334445666666666666666666666655544
No 236
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=87.82 E-value=1.9 Score=34.93 Aligned_cols=64 Identities=16% Similarity=-0.076 Sum_probs=52.7
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCchhHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 046775 568 ASVWGALLGAARIYKNVEVGQHAAEMLFAIE-------PEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 568 ~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~-------p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
+.-.-.|...+...|+.+.|..-++.+++.. +..+..|..|+.+|.+.|++++|....+...+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3445577888899999999999999998863 234567889999999999999999998877553
No 237
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.10 E-value=26 Score=34.97 Aligned_cols=134 Identities=12% Similarity=0.065 Sum_probs=88.2
Q ss_pred hHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHH----HHhHHCCCCCCcchHHHHHHHHh
Q 046775 32 VANSLVVMYAKCGNFIDSRRLFDAIPERSVVSWNSLFSCYVHCDFLEEAVCFF----KEMVLSGIRPNEFSLSSMINACA 107 (771)
Q Consensus 32 ~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~----~~m~~~g~~p~~~t~~~ll~~~~ 107 (771)
.+-++..-|.+.+++++|..++- .-...+.+.|+...|-++- +-..+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~-----------~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILA-----------SVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHH-----------HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 45567788889999999988753 2233456677777666554 55667889999988888888887
Q ss_pred cCCCcH-H----HHHHHHHHHHhC--CCCChhhHHHHHHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCC
Q 046775 108 GSGDSL-L----GRKIHGYSIKLG--YDSDMFSANALVDMYAKVGNLEDAVAVFKDIEHPDIVSWNAVIAGCVLHE 176 (771)
Q Consensus 108 ~~~~~~-~----a~~i~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g 176 (771)
....-+ . ..+...+-.+.| -..|+.....+...|.+.+++.+|+..|=.-..+....+..|+..+.+.+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 665322 1 222333334444 34577888889999999999999999884322233355655555444443
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=87.03 E-value=2.2 Score=35.77 Aligned_cols=66 Identities=12% Similarity=-0.027 Sum_probs=47.2
Q ss_pred CCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-C-CCchhHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 046775 566 ANASVWGALLGAARIYK---NVEVGQHAAEMLFAIE-P-EKSSTHVLLSNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 566 p~~~~~~~ll~a~~~~~---~~~~a~~~~~~~~~l~-p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
|+..+-..+..+....+ +..+|..+++.+++-+ | ..-.....|+-.|++.|++++|.+..+.+.+.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 44444444555554444 3556888888888876 5 45566778999999999999999998877653
No 239
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=86.54 E-value=11 Score=41.84 Aligned_cols=83 Identities=11% Similarity=-0.016 Sum_probs=47.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh---
Q 046775 370 MITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAK--- 446 (771)
Q Consensus 370 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k--- 446 (771)
....+.-.|++|.|++.+... ...+.+.+...|..+.-++- ...++..- .+ .| ..-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~--~~-~~-~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTK--KP-KR-DIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccC--CC-cc-cccHHHHHHHHHHHhh
Confidence 445566789999999988755 36677777777776554442 21121110 01 11 2235678888875
Q ss_pred cCCHHHHHHHHhhCCCC
Q 046775 447 CGSIDDADRAFSEIPDR 463 (771)
Q Consensus 447 ~g~~~~A~~~f~~~~~~ 463 (771)
.++..+|.+.|--+.-+
T Consensus 369 ~td~~~Al~Y~~li~l~ 385 (661)
T 2qx5_A 369 YSDPRVAVEYLVLITLN 385 (661)
T ss_dssp TTCHHHHHHHHHGGGGS
T ss_pred cCCHHHHHHHHHHHhcc
Confidence 58888888887766533
No 240
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=86.48 E-value=14 Score=31.27 Aligned_cols=62 Identities=10% Similarity=0.070 Sum_probs=34.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcccchHHHHHHHHHHHHhCC
Q 046775 368 TSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIKFGF 430 (771)
Q Consensus 368 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~ 430 (771)
+.-+......|.-++-.+++.++.. +.+|++..+..+..||.+.|+..++.+++.++-+.|+
T Consensus 95 d~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 95 NKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3344555566666666666665433 2355556666666666666666666666666555553
No 241
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=86.35 E-value=4 Score=35.29 Aligned_cols=109 Identities=12% Similarity=0.131 Sum_probs=68.9
Q ss_pred CCCCChhHHHHHHHHHHHcCCh------HHHHHHHHHHHHCCCCCCHH----HHHHHH--HH-HhccCcHHHHHHHHHHH
Q 046775 460 IPDRGIVSWSAMIGGLAQHGRG------KEALQMFGQMLEDGVLPNHI----TLVSVL--CA-CNHAGLVAEAKHHFESM 526 (771)
Q Consensus 460 ~~~~~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~pd~~----t~~~ll--~a-~~~~g~~~~a~~~~~~m 526 (771)
|...|..+|-..+....+.|++ ++.+++|++.... ++|+.. .|.-+. .| +...+++++|+++|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3466788999988888888998 8888999988875 777631 111111 01 11124555555555555
Q ss_pred HHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 046775 527 EKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMPFQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSS 603 (771)
Q Consensus 527 ~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~ 603 (771)
.+.+ . .+ +-+|-....--..+||+..|..++.+++.+.|....
T Consensus 87 ~~~h-------------------K------------kF---AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 87 RANC-------------------K------------KF---AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHHC-------------------T------------TB---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHHh-------------------H------------HH---HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 4320 0 01 446766666666788889999999999888886544
No 242
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.71 E-value=5.6 Score=31.58 Aligned_cols=69 Identities=10% Similarity=0.123 Sum_probs=50.4
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 046775 554 EAMELVDTMPFQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDNKL 633 (771)
Q Consensus 554 eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 633 (771)
.++.-+-.+..-|++.+..+-|.|||+.+|+..|.++++-+...-.+....|-.+ ..+++-.+.+.||
T Consensus 31 rglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~------------lqElkPtl~ELGI 98 (109)
T 1v54_E 31 KGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV------------IQELRPTLNELGI 98 (109)
T ss_dssp HHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH------------HHHHHHHHHHHTC
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHH------------HHHHhhHHHHhCC
Confidence 3444444556889999999999999999999999999998876544344445433 2456677777777
Q ss_pred c
Q 046775 634 K 634 (771)
Q Consensus 634 ~ 634 (771)
.
T Consensus 99 ~ 99 (109)
T 1v54_E 99 S 99 (109)
T ss_dssp C
T ss_pred C
Confidence 4
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.54 E-value=47 Score=34.86 Aligned_cols=95 Identities=14% Similarity=0.157 Sum_probs=69.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHHHHh-hCCCCC----cc
Q 046775 468 WSAMIGGLAQHGRGKEALQMFGQMLED--GVLPNH---ITLVSVLCACNHAGLVAEAKHHFESMEKK-FGIQPM----QE 537 (771)
Q Consensus 468 ~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~pd~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~i~p~----~~ 537 (771)
...|...|...|++.+|..++.++..+ |..+.. ..+..-+..|...+++..|..+++++... +...+. ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 355778888999999999999988753 222221 24556667889999999999999887532 222222 45
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhC
Q 046775 538 HYACMIDILGRAGKFQEAMELVDTM 562 (771)
Q Consensus 538 ~y~~lv~~l~r~g~~~eA~~~~~~m 562 (771)
.|.+++.++...+++.+|...|.+.
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 6899999999999999998877654
No 244
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=83.27 E-value=20 Score=30.26 Aligned_cols=81 Identities=9% Similarity=-0.025 Sum_probs=51.7
Q ss_pred CCCCCHHHHHHHHHHHhccCc---HHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHH
Q 046775 495 GVLPNHITLVSVLCACNHAGL---VAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKFQEAMELVDTMPFQANASVW 571 (771)
Q Consensus 495 g~~pd~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~ 571 (771)
+-.|+..|--.+..++.++.. ..+|+.+++.+.+. .|.. .-..+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~---~~~~------------------------------~Rd~L 81 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESR------------------------------RRECL 81 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH---CGGG------------------------------HHHHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---Ccch------------------------------hHHHH
Confidence 345666665556666666554 44667776666543 1210 11234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 046775 572 GALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLL 608 (771)
Q Consensus 572 ~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l 608 (771)
--|.-|+.+.|+.+.|.+..+.+++.+|+|..+-.+.
T Consensus 82 YyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 82 YYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 4566678888999999999999999999887655443
No 245
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=82.99 E-value=13 Score=29.33 Aligned_cols=86 Identities=13% Similarity=0.097 Sum_probs=59.3
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046775 414 AYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPDRGIVSWSAMIGGLAQHGRGKEALQMFGQMLE 493 (771)
Q Consensus 414 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 493 (771)
..++|.-|-+.+...+- ...+.-.-+......|++++|..+.+....||+.+|-++-. .+.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 35566666666655553 22222222344567899999999999999999999988765 467888888887778877
Q ss_pred CCCCCCHHHHH
Q 046775 494 DGVLPNHITLV 504 (771)
Q Consensus 494 ~g~~pd~~t~~ 504 (771)
+| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 76 55555554
No 246
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=82.91 E-value=11 Score=38.96 Aligned_cols=65 Identities=14% Similarity=-0.008 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHh-----CCCcc
Q 046775 571 WGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKD-----NKLKK 635 (771)
Q Consensus 571 ~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~-----~g~~k 635 (771)
...++.++...|+.+.+...++.+++.+|-+...|..|..+|..+|+..+|.++++..++ .|+.+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P 243 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP 243 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 445667778899999999999999999999999999999999999999999988777654 47653
No 247
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=82.51 E-value=12 Score=29.43 Aligned_cols=87 Identities=15% Similarity=0.115 Sum_probs=60.7
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046775 414 AYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPDRGIVSWSAMIGGLAQHGRGKEALQMFGQMLE 493 (771)
Q Consensus 414 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 493 (771)
..++|.-|-+.+...+- ...+.-.-+......|++++|..+.+....||+.+|-++-. .+.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 35566666666655542 22222222344567899999999999999999999988755 477888888888888888
Q ss_pred CCCCCCHHHHHH
Q 046775 494 DGVLPNHITLVS 505 (771)
Q Consensus 494 ~g~~pd~~t~~~ 505 (771)
+| .|....|..
T Consensus 97 sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 97 SS-DPALADFAA 107 (115)
T ss_dssp CS-SHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 76 555555543
No 248
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=81.74 E-value=7.8 Score=33.52 Aligned_cols=39 Identities=10% Similarity=0.212 Sum_probs=26.5
Q ss_pred CCCCcchHHHHHHHHHhCCCh------hHHHHHHHHhHHCCCCCCc
Q 046775 57 PERSVVSWNSLFSCYVHCDFL------EEAVCFFKEMVLSGIRPNE 96 (771)
Q Consensus 57 ~~~~~~~~n~li~~~~~~g~~------~~A~~l~~~m~~~g~~p~~ 96 (771)
...|..+|-..+.-.-+.|++ ++.+++|++.... ++|+.
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k 53 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDK 53 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGG
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccc
Confidence 445677787777777777887 7777777776653 55553
No 249
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=80.17 E-value=25 Score=39.64 Aligned_cols=51 Identities=16% Similarity=0.019 Sum_probs=40.0
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHH
Q 046775 474 GLAQHGRGKEALQMFGQMLEDGVLPNH-ITLVSVLCACNHAGLVAEAKHHFESM 526 (771)
Q Consensus 474 ~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m 526 (771)
-+...|+++-|+++-++... ..|+. .||..|..+|.+.|+++.|+-.++++
T Consensus 346 FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34567888888888888887 56765 48888888888888888888888877
No 250
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=79.97 E-value=93 Score=35.89 Aligned_cols=278 Identities=13% Similarity=0.064 Sum_probs=126.0
Q ss_pred HHhcCCHHHHHHHHHhcCCC----c--eecHHHHHHHHHHcCChHHHHHHHHHHhcCCC--CCC---HhhH-H---HHHH
Q 046775 343 YGKCGHVEDAVKIFKESSAV----D--LVACTSMITAYAQFGLGEEALKLYLEMQDREI--NPD---SFVC-S---SLLN 407 (771)
Q Consensus 343 y~k~g~~~~A~~~f~~~~~~----~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~---~~t~-~---~ll~ 407 (771)
....|+.+++..+++.-... + +..-..+.-|....|..++++.++.......- .-+ ...- . .+--
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 44556777777777664431 1 11122233355566666677777766554211 000 1111 1 1111
Q ss_pred HhhcccchHHHHHHHHHHHHhCCCCch--hHHHHHHHHHHhcCCHHHHHHHHhhCC--CCC-hhHHHHHHHHHHHcCChH
Q 046775 408 ACANLSAYEQGKQVHVHIIKFGFMSDT--FAGNSLVNMYAKCGSIDDADRAFSEIP--DRG-IVSWSAMIGGLAQHGRGK 482 (771)
Q Consensus 408 a~~~~~~~~~a~~i~~~~~~~g~~~~~--~~~~~Li~~y~k~g~~~~A~~~f~~~~--~~~-~~~~~~li~~~~~~g~~~ 482 (771)
++...++ +.+...+..++... .... ...-+|.-.|.-.|+-+....++..+. ..+ +.-.-++.-|+...|+.+
T Consensus 464 a~~GS~~-eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 464 AAMGSAN-IEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HSTTCCC-HHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HhcCCCC-HHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 2222222 23334444444322 1111 122234444555577666666665443 122 222223333444678888
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHH---HHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHh--hcCCHHHHH
Q 046775 483 EALQMFGQMLEDGVLPNHI-TLV---SVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILG--RAGKFQEAM 556 (771)
Q Consensus 483 ~A~~l~~~m~~~g~~pd~~-t~~---~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~--r~g~~~eA~ 556 (771)
.+..+.+.+... +|.. -|. .+..||...|+.....+++..+.++ ++...-...+-+++ -.|..+.+.
T Consensus 542 ~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d----~~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 542 LADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD----SNDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp GGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC----SCHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC----CcHHHHHHHHHHHHhhccCCHHHHH
Confidence 888888877763 3333 232 3445677778877777788777653 22222233333333 355555555
Q ss_pred HHHHhCCCCCCHhHHHHHHHHH--HhcCCH-HHHHHHHHHHHhcCCCCc---hhHHHHHHHHHhcCCc--hhHHHHHHHH
Q 046775 557 ELVDTMPFQANASVWGALLGAA--RIYKNV-EVGQHAAEMLFAIEPEKS---STHVLLSNIYASAGMW--DNVAKVRRFM 628 (771)
Q Consensus 557 ~~~~~m~~~p~~~~~~~ll~a~--~~~~~~-~~a~~~~~~~~~l~p~~~---~~~~~l~~~y~~~g~~--~~a~~~~~~m 628 (771)
++++.+.-..|..+-....-|. .-.|+. ..+...+.++.. |+++. .+...|+.+-+...+- ..+..+++.+
T Consensus 615 rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~-D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L 693 (963)
T 4ady_A 615 RIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK-DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNF 693 (963)
T ss_dssp HHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc-CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHH
Confidence 5555443223333222222222 112222 344445555532 33322 2333455444443332 1366666655
Q ss_pred Hh
Q 046775 629 KD 630 (771)
Q Consensus 629 ~~ 630 (771)
.+
T Consensus 694 ~~ 695 (963)
T 4ady_A 694 LS 695 (963)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 251
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=79.92 E-value=18 Score=28.56 Aligned_cols=86 Identities=9% Similarity=0.033 Sum_probs=59.9
Q ss_pred ChhHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcCCHHHHHHHHHhcCCCceecHHHHHHHHHHcCChHHHHHHHHHHhc
Q 046775 313 AIGVCKQVHALSVKTAFESDDYIVNSLIDAYGKCGHVEDAVKIFKESSAVDLVACTSMITAYAQFGLGEEALKLYLEMQD 392 (771)
Q Consensus 313 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 392 (771)
..++|..|-+.+...+- ...+--.-+..+...|++++|..+.+...-||.+.|-++-. .+.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34555555555555543 33333344456778899999999999999999999988755 467888888888878877
Q ss_pred CCCCCCHhhHH
Q 046775 393 REINPDSFVCS 403 (771)
Q Consensus 393 ~g~~p~~~t~~ 403 (771)
+| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 66 45544444
No 252
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=79.76 E-value=8.3 Score=33.98 Aligned_cols=26 Identities=12% Similarity=0.211 Sum_probs=17.8
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCCCC
Q 046775 540 ACMIDILGRAGKFQEAMELVDTMPFQ 565 (771)
Q Consensus 540 ~~lv~~l~r~g~~~eA~~~~~~m~~~ 565 (771)
--+..+|...|+.++|+..++..|.+
T Consensus 126 ykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 126 YKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 34566677777777777777777633
No 253
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=79.75 E-value=15 Score=30.93 Aligned_cols=70 Identities=10% Similarity=0.128 Sum_probs=51.4
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 046775 553 QEAMELVDTMPFQANASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAKVRRFMKDNK 632 (771)
Q Consensus 553 ~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 632 (771)
..++.-+-.+..-|++.+..+-|.|||+.+|+..|.+++|-+...-.+....|-.+ ..+++-.+.+.|
T Consensus 73 rrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~------------lqElkPtl~ELG 140 (152)
T 2y69_E 73 RKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV------------IQELRPTLNELG 140 (152)
T ss_dssp HHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH------------HHHHHHHHHHHT
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHH------------HHHHhhHHHHhC
Confidence 34444445567899999999999999999999999999998876543334445433 245667777777
Q ss_pred Cc
Q 046775 633 LK 634 (771)
Q Consensus 633 ~~ 634 (771)
|.
T Consensus 141 I~ 142 (152)
T 2y69_E 141 IS 142 (152)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 254
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=79.24 E-value=9.8 Score=39.36 Aligned_cols=69 Identities=12% Similarity=0.124 Sum_probs=49.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH----hhCCCCCcch
Q 046775 469 SAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEK----KFGIQPMQEH 538 (771)
Q Consensus 469 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~i~p~~~~ 538 (771)
..++..+...|++.+|+..++.+... -+-++..+..++.++...|+..+|++.|+...+ +.|++|..++
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 44566677778888888887777763 233666788888888888888888888776543 5688888664
No 255
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=78.52 E-value=9.1 Score=32.27 Aligned_cols=66 Identities=6% Similarity=-0.042 Sum_probs=47.5
Q ss_pred CCHhHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 046775 566 ANASVWGALLGAARIY---KNVEVGQHAAEMLFAIEPEK-SSTHVLLSNIYASAGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 566 p~~~~~~~ll~a~~~~---~~~~~a~~~~~~~~~l~p~~-~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 631 (771)
|+..+--.+..+.... .+...|..+++.+++-+|.+ -..+..|+-.|.+.|++++|.+.-+.+.+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3443333344444333 35678999999999988854 556778999999999999999998877543
No 256
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=78.50 E-value=23 Score=34.00 Aligned_cols=123 Identities=13% Similarity=0.062 Sum_probs=65.0
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHhhcCCH
Q 046775 474 GLAQHGRGKEALQMFGQMLEDGVLP-NHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDILGRAGKF 552 (771)
Q Consensus 474 ~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~ 552 (771)
...+.|..++|++....-++. .| |...-..+..-++-.|+++.|.+-++...+. .|+...-..+..-+.++.+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~aE~~ 80 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQA 80 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHHHHH
Confidence 345667777777777777764 34 3334445556667777777777777766543 45532221111222222111
Q ss_pred HHHHHHHH--hCCCCC-CHhHHHHH-HHHH--HhcCCHHHHHHHHHHHHhcCCCCch
Q 046775 553 QEAMELVD--TMPFQA-NASVWGAL-LGAA--RIYKNVEVGQHAAEMLFAIEPEKSS 603 (771)
Q Consensus 553 ~eA~~~~~--~m~~~p-~~~~~~~l-l~a~--~~~~~~~~a~~~~~~~~~l~p~~~~ 603 (771)
.+ ++|. ..|.-+ ++.-|..+ +.+. ...|+.+.|...-+.+++.-|..++
T Consensus 81 R~--~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 81 RK--DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp HH--HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HH--HHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 11 1222 123111 12224443 3333 3457888888888888888776665
No 257
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=76.86 E-value=61 Score=32.01 Aligned_cols=129 Identities=13% Similarity=0.125 Sum_probs=77.9
Q ss_pred HHHHhhhcCCChHHHHHHhhhCCCCCeehHHHHHHHHHhCCChhHHHHH----HHHHHHCCCCCCHhhHHHHHHHHhccC
Q 046775 237 GLVDMYAKCGSMDEARMIFHLMPEKNLIAWNIVISGHLQNGGDMEAASL----FPWMYREGVGFDQTTLSTVLKSVASFQ 312 (771)
Q Consensus 237 ~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~pd~~t~~~ll~a~~~~~ 312 (771)
++..=|.+.+++++|..++.. -...+.+.|+...|-++ .+-..+.++++|......++..+....
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p 106 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELD 106 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 344556677777777776532 23345566776665554 444455688888888888777776643
Q ss_pred Chh-HHHHHHHHHH----Hhc--CCCchHHHhHHHHHHHhcCCHHHHHHHHHhcCCCceecHHHHHHHHHH
Q 046775 313 AIG-VCKQVHALSV----KTA--FESDDYIVNSLIDAYGKCGHVEDAVKIFKESSAVDLVACTSMITAYAQ 376 (771)
Q Consensus 313 ~~~-~a~~i~~~~~----~~g--~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~ 376 (771)
.-+ .-.++...++ +.| -..|+.....+...|.+.|++.+|+..|---...|...+..|+.-+.+
T Consensus 107 ~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~ 177 (312)
T 2wpv_A 107 PSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLC 177 (312)
T ss_dssp TTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence 211 1223333333 333 234778888889999999999999988763332244455444444433
No 258
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=76.47 E-value=66 Score=38.61 Aligned_cols=143 Identities=15% Similarity=0.079 Sum_probs=94.1
Q ss_pred HHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CC-----h---------
Q 046775 404 SLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPD----RG-----I--------- 465 (771)
Q Consensus 404 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~----~~-----~--------- 465 (771)
.++..|...+..+.+.++... .+.++...-.+..+|..+|++++|.+.|.+... .+ .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 445555666666666554433 234444445567788899999999999987641 10 0
Q ss_pred --------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--H--HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCC
Q 046775 466 --------VSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNH--I--TLVSVLCACNHAGLVAEAKHHFESMEKKFGIQ 533 (771)
Q Consensus 466 --------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~ 533 (771)
.-|.-++..+.++|.++.++++-+..++..-.-+. . .+..+..++...|++++|...+-++... .
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---~ 968 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---P 968 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---S
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---H
Confidence 12566778888899999999888877764222222 2 3667888889999999998888777532 3
Q ss_pred CCcchHHHHHHHHhhcCCHHH
Q 046775 534 PMQEHYACMIDILGRAGKFQE 554 (771)
Q Consensus 534 p~~~~y~~lv~~l~r~g~~~e 554 (771)
-.......+|..++..|.+++
T Consensus 969 ~r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 969 LKKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp SCHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHhCCChhh
Confidence 334556667777776666544
No 259
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=76.35 E-value=17 Score=28.67 Aligned_cols=85 Identities=11% Similarity=0.052 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcCCHHHHHHHHHhcCCCceecHHHHHHHHHHcCChHHHHHHHHHHhcC
Q 046775 314 IGVCKQVHALSVKTAFESDDYIVNSLIDAYGKCGHVEDAVKIFKESSAVDLVACTSMITAYAQFGLGEEALKLYLEMQDR 393 (771)
Q Consensus 314 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 393 (771)
.++|..|-+.+...+- ...+--.-+..+...|++++|..+.+...-||.+.|-++-. .+.|..+++..-+.++..+
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 4555555555555443 33333344456778899999999999999999999988755 4778888888888788776
Q ss_pred CCCCCHhhHH
Q 046775 394 EINPDSFVCS 403 (771)
Q Consensus 394 g~~p~~~t~~ 403 (771)
| .|....|.
T Consensus 98 g-~p~~q~Fa 106 (115)
T 2uwj_G 98 S-DPALADFA 106 (115)
T ss_dssp S-SHHHHHHH
T ss_pred C-CHHHHHHH
Confidence 6 45554444
No 260
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=76.04 E-value=66 Score=32.04 Aligned_cols=168 Identities=16% Similarity=0.100 Sum_probs=100.2
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHHhcCCCceecHHHHHHHHHHcCChHHHHHHH----HHHhcCCCCCCHhhHHHHHHHhh
Q 046775 335 IVNSLIDAYGKCGHVEDAVKIFKESSAVDLVACTSMITAYAQFGLGEEALKLY----LEMQDREINPDSFVCSSLLNACA 410 (771)
Q Consensus 335 ~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~p~~~t~~~ll~a~~ 410 (771)
.+.++..=|.+.+++++|.+++.+- ...+.+.|+...|-++- +-..+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4566777789999999999876432 23345566655554444 33445677888877777777666
Q ss_pred cccchH-HHHHHHHH----HHHhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHH
Q 046775 411 NLSAYE-QGKQVHVH----IIKFG--FMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPDRGIVSWSAMIGGLAQHGRGKE 483 (771)
Q Consensus 411 ~~~~~~-~a~~i~~~----~~~~g--~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 483 (771)
....-+ .-..+... -.+.| -.-|+.+-..+...|.+.|++.+|+..|-.-.++.+..+..|+.-+...+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 554321 11222333 33444 345778888999999999999999999853233333566555555444433221
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 046775 484 ALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEK 528 (771)
Q Consensus 484 A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 528 (771)
+ |...-.++|. |.-.+++..|...|+...+
T Consensus 186 ~--------------dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 A--------------PLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp H--------------HHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred H--------------HHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 1 2222222332 3445788888887766654
No 261
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=76.00 E-value=17 Score=28.95 Aligned_cols=64 Identities=20% Similarity=0.259 Sum_probs=50.7
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHH
Q 046775 480 RGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDI 545 (771)
Q Consensus 480 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~ 545 (771)
+.-+..+-++.+....+-|+.....+.|.||.+.+++.-|.++|+..+.+- .+....|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHHH
Confidence 344566667777777889999999999999999999999999999987664 3445668777653
No 262
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=73.59 E-value=1.1 Score=28.31 Aligned_cols=13 Identities=46% Similarity=1.242 Sum_probs=9.9
Q ss_pred ccc-cCCccCCCCC
Q 046775 758 HHF-RNGSCSCGGY 770 (771)
Q Consensus 758 h~f-~~g~csc~d~ 770 (771)
|.. ++|.||||-|
T Consensus 16 HRL~~~~~C~CG~y 29 (42)
T 2l0z_A 16 HRLNSLGGCRCGKY 29 (42)
T ss_dssp SCCCTTSSBTTTTB
T ss_pred ceecCCceeccccc
Confidence 444 4899999977
No 263
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=73.31 E-value=39 Score=32.27 Aligned_cols=23 Identities=9% Similarity=0.083 Sum_probs=13.1
Q ss_pred HHHHHHHcCCChHHHHHHHhcCC
Q 046775 35 SLVVMYAKCGNFIDSRRLFDAIP 57 (771)
Q Consensus 35 ~ll~~y~~~g~~~~A~~~f~~~~ 57 (771)
+.+...++.|+++....+++.-.
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~ 29 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGA 29 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTC
T ss_pred hHHHHHHHcCCHHHHHHHHHcCC
Confidence 44445556666666666665543
No 264
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=72.96 E-value=76 Score=31.31 Aligned_cols=169 Identities=12% Similarity=0.173 Sum_probs=103.5
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHHhcCCCceecHHHHHHHHHHcCChHHHHHH----HHHHhcCCCCCCHhhHHHHHHHhh
Q 046775 335 IVNSLIDAYGKCGHVEDAVKIFKESSAVDLVACTSMITAYAQFGLGEEALKL----YLEMQDREINPDSFVCSSLLNACA 410 (771)
Q Consensus 335 ~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~a~~ 410 (771)
.+.++..=|.+.+++++|.+++..- ...+.+.|+...|-++ .+-..+.+++++..+...++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4567778888999999999886442 2334566776655554 333444678888877777777665
Q ss_pred cccc--h---HHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHc---CC
Q 046775 411 NLSA--Y---EQGKQVHVHIIKFG--FMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPDRGIVSWSAMIGGLAQH---GR 480 (771)
Q Consensus 411 ~~~~--~---~~a~~i~~~~~~~g--~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~---g~ 480 (771)
.... . .-.......-.+.| -..++.....+...|.+.|++.+|+..|-.-...+...+-.|+.-+.+. |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 5331 1 12222233333333 2347888899999999999999999988743333455555555544443 44
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 046775 481 GKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKK 529 (771)
Q Consensus 481 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 529 (771)
..++--+.-+ ++| -|.-.|++..|..+|+...+.
T Consensus 184 ~~e~dlf~~R--------------aVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 184 DSTVAEFFSR--------------LVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHHHHHH--------------HHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred cchHHHHHHH--------------HHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 3332221111 222 233468889999988877654
No 265
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=72.04 E-value=46 Score=28.41 Aligned_cols=72 Identities=13% Similarity=0.037 Sum_probs=52.1
Q ss_pred CCCCCHHHHHHHHHHHhccCc---HHHHHHHHHHHHHhhCCCCC--cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH
Q 046775 495 GVLPNHITLVSVLCACNHAGL---VAEAKHHFESMEKKFGIQPM--QEHYACMIDILGRAGKFQEAMELVDTM-PFQANA 568 (771)
Q Consensus 495 g~~pd~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~i~p~--~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~ 568 (771)
+-.|+..|-..+..++.++.. +.+|+.+++.+.+. .|. .+..-.+.-++.|.|++++|.++++.+ ..+|+.
T Consensus 34 ~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~---~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 34 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp STTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH---CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 335777776677777777664 56789999988765 342 344445667889999999999999887 467765
Q ss_pred h
Q 046775 569 S 569 (771)
Q Consensus 569 ~ 569 (771)
.
T Consensus 111 ~ 111 (144)
T 1y8m_A 111 K 111 (144)
T ss_dssp H
T ss_pred H
Confidence 3
No 266
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=69.89 E-value=29 Score=30.49 Aligned_cols=25 Identities=8% Similarity=-0.019 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHhcCCchhHHHHHHH
Q 046775 603 STHVLLSNIYASAGMWDNVAKVRRF 627 (771)
Q Consensus 603 ~~~~~l~~~y~~~g~~~~a~~~~~~ 627 (771)
..-..++.+|.+.|++++|..+.+.
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 3444566667777777777666554
No 267
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=65.77 E-value=1.8 Score=36.72 Aligned_cols=40 Identities=20% Similarity=0.363 Sum_probs=29.0
Q ss_pred CCeEEEe----eccccccCccchhhhhhhhhcceEEEecCCccccccCCccC
Q 046775 719 GATIRVK----KNLRICVDCHTSFEFISKIVSREIIVRDVNRFHHFRNGSCS 766 (771)
Q Consensus 719 ~~~~~~~----kn~r~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~cs 766 (771)
+-.+||+ ++.+||-+| .|+..-..-+++-+||||+++.|-
T Consensus 44 ~~~~Riv~~~~~~~~vi~n~--------~i~~~~~y~~~~~~Fh~w~~~~~~ 87 (130)
T 1qc6_A 44 SSTFRVVGVKLQDQQVVINY--------SIVKGLKYNQATPTFHQWRDARQV 87 (130)
T ss_dssp TTEEEEEEECTTTCCEEEEE--------ECCTTCEEEEEETTEEEEECSSCE
T ss_pred CcEEEEEEEeCCCCeEEEee--------EEeCCcEEeccCCeeEEEEcCCEE
Confidence 4567776 578888887 344444455799999999999873
No 268
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=63.78 E-value=87 Score=28.49 Aligned_cols=107 Identities=13% Similarity=0.236 Sum_probs=73.4
Q ss_pred HHHHHHHHhCC-CCCCHh---HHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCchhHHHHHHHHHhcCCchhHHHHHH
Q 046775 553 QEAMELVDTMP-FQANAS---VWGALLGAARIYKNVEVGQHAAEMLFA--IEPEKSSTHVLLSNIYASAGMWDNVAKVRR 626 (771)
Q Consensus 553 ~eA~~~~~~m~-~~p~~~---~~~~ll~a~~~~~~~~~a~~~~~~~~~--l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 626 (771)
+.+...|...+ .+-|.. +|-.++..| ..++......+++.+.. +.-.-+..|...+..+...|+|.+|.+|++
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 139 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLE 139 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444444443 344543 666666655 24456678888888876 456678889999999999999999999999
Q ss_pred HHHhCCCccCCccceEEEcCEEEEEEeCCCCccchHHHHHHHHHHHHHHHhcCcccCCc
Q 046775 627 FMKDNKLKKEPGMSWIEVKDKVYTFTVGDRSHARSKEIYAKLDEVSDLLNKAGYVPMVE 685 (771)
Q Consensus 627 ~m~~~g~~k~~g~s~i~~~~~~~~f~~~~~~h~~~~~i~~~l~~l~~~~~~~g~~p~~~ 685 (771)
.-.+++.+ | .+.+..+..+...+|.+.+.|.+..
T Consensus 140 ~GI~~~A~--P-----------------------~~rL~~~~~~F~~R~~~~~~~~~~~ 173 (202)
T 3esl_A 140 LGAENNCR--P-----------------------YNRLLRSLSNYEDRLREMNIVENQN 173 (202)
T ss_dssp HHHHTTCB--S-----------------------HHHHHHHHHHHHHHHHHTTCCCC--
T ss_pred HHHHcCCc--c-----------------------HHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 87777653 2 2455666677788888888755544
No 269
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=63.47 E-value=38 Score=28.53 Aligned_cols=61 Identities=21% Similarity=0.290 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHHH
Q 046775 483 EALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMIDI 545 (771)
Q Consensus 483 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~ 545 (771)
+..+-++.+....+-|+.....+.|.||.+.+++.-|..+|+..+.+- .+..+.|..+++-
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lqE 131 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHHH
Confidence 455556666777789999999999999999999999999999987653 4456678777653
No 270
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=62.76 E-value=1e+02 Score=29.06 Aligned_cols=46 Identities=9% Similarity=0.078 Sum_probs=21.8
Q ss_pred cchHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcCCHHHHHHHHh
Q 046775 413 SAYEQGKQVHVHIIKFGFMSDTF--AGNSLVNMYAKCGSIDDADRAFS 458 (771)
Q Consensus 413 ~~~~~a~~i~~~~~~~g~~~~~~--~~~~Li~~y~k~g~~~~A~~~f~ 458 (771)
+.......+...+.+.|..++.. ...+.+...++.|+.+-+..+++
T Consensus 193 ~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 193 SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp SCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred cccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 33333345555666666544321 11223334445566665555555
No 271
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=60.55 E-value=2e+02 Score=31.68 Aligned_cols=41 Identities=15% Similarity=0.117 Sum_probs=25.2
Q ss_pred HHHHHHHHhcCChhHHHHHHccCCC---CCcccHHHHHHHHHhC
Q 046775 135 NALVDMYAKVGNLEDAVAVFKDIEH---PDIVSWNAVIAGCVLH 175 (771)
Q Consensus 135 ~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~n~li~~~~~~ 175 (771)
=++|--+.|||++++|.++.++... .-...+-+.+..|+.+
T Consensus 156 Wa~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~s 199 (661)
T 2qx5_A 156 WALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYASS 199 (661)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC---
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHhC
Confidence 3566777889999999888876643 1123666777777643
No 272
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=58.22 E-value=1.3e+02 Score=35.92 Aligned_cols=51 Identities=12% Similarity=0.120 Sum_probs=25.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 046775 471 MIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESM 526 (771)
Q Consensus 471 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 526 (771)
++..+..+|+++-|.++..- .+-|...--.+..++...|++++|.++|.+.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 44455555655555443322 1223332223444556666666666666654
No 273
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=57.93 E-value=1.1e+02 Score=31.67 Aligned_cols=331 Identities=11% Similarity=0.109 Sum_probs=142.9
Q ss_pred HHHHHHcCCChHHHHHHHhcCCCCCc---chHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcch--HHHHHHHHhcCC
Q 046775 36 LVVMYAKCGNFIDSRRLFDAIPERSV---VSWNSLFSCYVHCDFLEEAVCFFKEMVLSGIRPNEFS--LSSMINACAGSG 110 (771)
Q Consensus 36 ll~~y~~~g~~~~A~~~f~~~~~~~~---~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~~~~~~~ 110 (771)
.+..-+..|+++-++.+++.-..++. ..++. +...++.|+.+-+.. +.+.|..++... -.+.|...+..|
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~-L~~A~~~g~~~~v~~----Ll~~g~~~~~~~~~g~t~L~~A~~~g 91 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETP-LHMAARAGHTEVAKY----LLQNKAKVNAKAKDDQTPLHCAARIG 91 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCH-HHHHHHHTCHHHHHH----HHHHTCCSSCCCTTSCCHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHH----HHhCCCCCCCCCCCCCCHHHHHHHCC
Confidence 44455566777777777665433322 12222 233334455433333 333344333211 112233333445
Q ss_pred CcHHHHHHHHHHHHhCCCCChh--hHHHHHHHHHhcCChhHHHHHHccCCCC---CcccHHHHHHHHHhCCChhHHHHHH
Q 046775 111 DSLLGRKIHGYSIKLGYDSDMF--SANALVDMYAKVGNLEDAVAVFKDIEHP---DIVSWNAVIAGCVLHEHNDWALKLF 185 (771)
Q Consensus 111 ~~~~a~~i~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~n~li~~~~~~g~~~~A~~l~ 185 (771)
+.+ +...+++.|..++.. .....+...++.|+.+.+..+++.-... +..-++.|. ..++.|+.+ ++
T Consensus 92 ~~~----~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~-~A~~~g~~~----~v 162 (437)
T 1n11_A 92 HTN----MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLH-VAAKYGKVR----VA 162 (437)
T ss_dssp CHH----HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHH-HHHHTTCHH----HH
T ss_pred CHH----HHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHH-HHHHcCCHH----HH
Confidence 543 344445555444321 1122334445667777766666554322 222223333 334455544 33
Q ss_pred HHHHhCCCCCChhh--HHHHHHHhhcCCcHHHHHHHHHHHHHccCCCChhH--HHHHHHhhhcCCChHHHHHHhhhCCC-
Q 046775 186 QQMKSSEINPNMFT--YTSALKACAGMELKELGRQLHCSLIKMEIKSDPIV--GVGLVDMYAKCGSMDEARMIFHLMPE- 260 (771)
Q Consensus 186 ~~m~~~g~~p~~~t--~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~--~~~Li~~y~~~g~~~~A~~~f~~m~~- 260 (771)
+.+.+.|..|+... -.+.|...+..++.+. ...+++.|..++... ..+.+...++.|+.+-+..+++.-..
T Consensus 163 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~ 238 (437)
T 1n11_A 163 ELLLERDAHPNAAGKNGLTPLHVAVHHNNLDI----VKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA 238 (437)
T ss_dssp HHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHH----HHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred HHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 33344454443221 1122333334455443 334444554433211 12234445566777776666664332
Q ss_pred --CCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH---hhHHHHHHHHhccCChhHHHHHHHHHHHhcCCCchH-
Q 046775 261 --KNLIAWNIVISGHLQNGGDMEAASLFPWMYREGVGFDQ---TTLSTVLKSVASFQAIGVCKQVHALSVKTAFESDDY- 334 (771)
Q Consensus 261 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~---~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~- 334 (771)
++...++.+.. .+..|..+ +++.+.+.|..++. ...+. +...+..|..+.+ ..+.+.|...+..
T Consensus 239 ~~~~~~g~t~L~~-A~~~g~~~----~v~~Ll~~~~~~~~~~~~g~t~-L~~A~~~~~~~~~----~~Ll~~g~~~~~~~ 308 (437)
T 1n11_A 239 NAESVQGVTPLHL-AAQEGHAE----MVALLLSKQANGNLGNKSGLTP-LHLVAQEGHVPVA----DVLIKHGVMVDATT 308 (437)
T ss_dssp TCCCTTCCCHHHH-HHHTTCHH----HHHHHHTTTCCTTCCCTTCCCH-HHHHHHHTCHHHH----HHHHHHTCCTTCCC
T ss_pred CCCCCCCCCHHHH-HHHCCCHH----HHHHHHhcCCCCCCCCCCCCCH-HHHHHHcCCHHHH----HHHHhCCccCCCCC
Confidence 22222333332 23445433 33333444443332 11222 2333344555433 3444455443321
Q ss_pred -HHhHHHHHHHhcCCHHHHHHHHHhcCCCc---eecHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCH
Q 046775 335 -IVNSLIDAYGKCGHVEDAVKIFKESSAVD---LVACTSMITAYAQFGLGEEALKLYLEMQDREINPDS 399 (771)
Q Consensus 335 -~~~~Li~~y~k~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 399 (771)
...+.+..-+..|+.+-+.-+++.-...+ ..-++.|..+ ++.|+.+ +.+.+.+.|..|+.
T Consensus 309 ~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A-~~~g~~~----iv~~Ll~~ga~~~~ 372 (437)
T 1n11_A 309 RMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQA-AQQGHTD----IVTLLLKNGASPNE 372 (437)
T ss_dssp SSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHH-HHTTCHH----HHHHHHHTTCCSCC
T ss_pred CCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHH-HHCChHH----HHHHHHHCcCCCCC
Confidence 12334455566788777777776544332 2233444333 4556543 33444455666654
No 274
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=57.72 E-value=11 Score=36.22 Aligned_cols=60 Identities=18% Similarity=0.150 Sum_probs=43.5
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 046775 544 DILGRAGKFQEAMELVDTM-PFQAN-ASVWGALLGAARIYKNVEVGQHAAEMLFAIEPEKSS 603 (771)
Q Consensus 544 ~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~ 603 (771)
.-+.+.|.+++|++.+..- .-.|. ...=..|..-++..|+.++|..-++.+.+++|+...
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 3466888888888766544 34564 445555667788889999999988888899885443
No 275
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=56.97 E-value=72 Score=31.41 Aligned_cols=42 Identities=10% Similarity=-0.039 Sum_probs=34.7
Q ss_pred HHhCCCCCCH--hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 046775 559 VDTMPFQANA--SVWGALLGAARIYKNVEVGQHAAEMLFAIEPE 600 (771)
Q Consensus 559 ~~~m~~~p~~--~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 600 (771)
|...+++|.- .++++-++.+.+++|+.-|...+++++++.|.
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 4444677753 37888889999999999999999999999994
No 276
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=55.53 E-value=37 Score=32.97 Aligned_cols=206 Identities=13% Similarity=0.094 Sum_probs=108.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcc---hHHHHHHHHhcC
Q 046775 33 ANSLVVMYAKCGNFIDSRRLFDAIPERSVVSWNSLFSCYVHCDFLEEAVCFFKEMVLSGIRPNEF---SLSSMINACAGS 109 (771)
Q Consensus 33 ~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~~~~~~ 109 (771)
..+.+...+..|+.+-+..+++.-..++...-.+.+...+..|+.+-+ +.+.+.|..++.. -.+.+ ...+..
T Consensus 31 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t~L-~~A~~~ 105 (285)
T 3kea_A 31 GHSASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNTAL-YYAVDS 105 (285)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCCHH-HHHHHT
T ss_pred CCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCcHH-HHHHHc
Confidence 344556667789999998888864433322112334444556665433 3444557665543 22333 334455
Q ss_pred CCcHHHHHHHHHHHHhCCCCChhh---HHHHHHHHHhcCChhHHHHHHccCCCC-CcccHHHHHHHHHhCCChhHHHHHH
Q 046775 110 GDSLLGRKIHGYSIKLGYDSDMFS---ANALVDMYAKVGNLEDAVAVFKDIEHP-DIVSWNAVIAGCVLHEHNDWALKLF 185 (771)
Q Consensus 110 ~~~~~a~~i~~~~~~~g~~~~~~~---~~~Li~~y~~~g~~~~A~~~f~~~~~~-~~~~~n~li~~~~~~g~~~~A~~l~ 185 (771)
|+.+ +...+++.|..++... +...+...+..|+.+-+..+++.-... +...-.+.+...+..|+.+-+.-++
T Consensus 106 g~~~----~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 181 (285)
T 3kea_A 106 GNMQ----TVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLL 181 (285)
T ss_dssp TCHH----HHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHH----HHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHH
Confidence 6655 4444555665544322 134556667788888888888776543 2213344445556777776655555
Q ss_pred HHHHhCCCCCChhhHHHHHHHhhcCCcHHHHHHHHHHHHHccCCCChhHHHHHHHhhhcCCChHHHHHHhhh
Q 046775 186 QQMKSSEINPNMFTYTSALKACAGMELKELGRQLHCSLIKMEIKSDPIVGVGLVDMYAKCGSMDEARMIFHL 257 (771)
Q Consensus 186 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 257 (771)
+.-..... .|..-.+..|...+..++. ++.+.+++.|..++.... .-...|+.+-+.-+++.
T Consensus 182 ~~gad~n~-~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~~-----~a~~~~~~~iv~~Ll~~ 243 (285)
T 3kea_A 182 DYMTSTNT-NNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSANL-----ENVLLDDAEIAKMIIEK 243 (285)
T ss_dssp HHHHHTCT-TCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTTG-----GGGTTTCHHHHHHHHHH
T ss_pred HcCCCCCc-ccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCCh-----hhhhcCCHHHHHHHHHc
Confidence 44322211 1111111122223334443 455566777877765542 22456777666666554
No 277
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=52.17 E-value=1.3e+02 Score=27.01 Aligned_cols=91 Identities=14% Similarity=0.104 Sum_probs=39.1
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 046775 432 SDTFAGNSLVNMYAKCGSIDDADRAFSEIPDRGIVSWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACN 511 (771)
Q Consensus 432 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 511 (771)
++..+-...+...++.|..+....+.+.+..++...-...+.++...|.. +++..+.++.. .||...-...+.++.
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~ 168 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALG 168 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 34444444445555555443333333334444444444444455554442 23344444332 244444444444444
Q ss_pred ccCcHHHHHHHHHHHH
Q 046775 512 HAGLVAEAKHHFESME 527 (771)
Q Consensus 512 ~~g~~~~a~~~~~~m~ 527 (771)
..|. .++...+..+.
T Consensus 169 ~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 169 EIGG-ERVRAAMEKLA 183 (211)
T ss_dssp HHCS-HHHHHHHHHHH
T ss_pred HhCc-hhHHHHHHHHH
Confidence 4443 23333333333
No 278
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=49.81 E-value=93 Score=28.64 Aligned_cols=18 Identities=6% Similarity=-0.077 Sum_probs=9.2
Q ss_pred HHhcCChhHHHHHHccCC
Q 046775 141 YAKVGNLEDAVAVFKDIE 158 (771)
Q Consensus 141 y~~~g~~~~A~~~f~~~~ 158 (771)
.++.|+.+-...+++.-.
T Consensus 123 A~~~~~~~~~~~Ll~~g~ 140 (241)
T 1k1a_A 123 AVNTECQETVQLLLERGA 140 (241)
T ss_dssp HHHHTCHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHcCC
Confidence 344555555555555433
No 279
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=49.73 E-value=1.4e+02 Score=26.57 Aligned_cols=18 Identities=22% Similarity=0.327 Sum_probs=8.3
Q ss_pred CCHhhHHHHHHHhhcccc
Q 046775 397 PDSFVCSSLLNACANLSA 414 (771)
Q Consensus 397 p~~~t~~~ll~a~~~~~~ 414 (771)
++...-...+.+....+.
T Consensus 150 ~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 150 EDGWVRQSAADALGEIGG 167 (201)
T ss_dssp SSHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 344444444444444443
No 280
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.27 E-value=2.5e+02 Score=29.24 Aligned_cols=26 Identities=19% Similarity=0.084 Sum_probs=19.9
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHC
Q 046775 267 NIVISGHLQNGGDMEAASLFPWMYRE 292 (771)
Q Consensus 267 ~~li~~~~~~g~~~~A~~~~~~m~~~ 292 (771)
..|...|...|++.+|.+++..+..+
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~E 166 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVE 166 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45667788888888888888887653
No 281
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=48.37 E-value=82 Score=28.03 Aligned_cols=150 Identities=12% Similarity=0.081 Sum_probs=69.6
Q ss_pred HHHHcCCChHHHHHHHhcCC-C---CCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcch---HHHHHHHHhcCC
Q 046775 38 VMYAKCGNFIDSRRLFDAIP-E---RSVVSWNSLFSCYVHCDFLEEAVCFFKEMVLSGIRPNEFS---LSSMINACAGSG 110 (771)
Q Consensus 38 ~~y~~~g~~~~A~~~f~~~~-~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~ll~~~~~~~ 110 (771)
...+..|+.+....+++.-+ . +|..-++.|..+. +.|+. ++++.+.+.|..|+... .+. +...+..|
T Consensus 10 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~-~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~ 83 (201)
T 3hra_A 10 LEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAV-HNNDI----EIAKALIDRGADINLQNSISDSP-YLYAGAQG 83 (201)
T ss_dssp HHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHH-HHTCH----HHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTT
T ss_pred HHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHH-HcCCH----HHHHHHHHcCCCCCCCCCCCCCH-HHHHHHcC
Confidence 34456788888888887654 2 2333344444433 44543 34444555666655432 222 33333445
Q ss_pred CcHHHHHHHHHHHHhCCCCChh--hHHHHHHHHHhcCChhHHHHHHccC-CC---CCcccHHHHHHHHHhCCChhHHHHH
Q 046775 111 DSLLGRKIHGYSIKLGYDSDMF--SANALVDMYAKVGNLEDAVAVFKDI-EH---PDIVSWNAVIAGCVLHEHNDWALKL 184 (771)
Q Consensus 111 ~~~~a~~i~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~~~A~~~f~~~-~~---~~~~~~n~li~~~~~~g~~~~A~~l 184 (771)
+.+..+.+++ ..+..++.. .....+...++.|+.+-+..+++.- .. +|..-++.|..+.........-.++
T Consensus 84 ~~~~~~~Ll~---~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~ 160 (201)
T 3hra_A 84 RTEILAYMLK---HATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDI 160 (201)
T ss_dssp CHHHHHHHHH---HSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHH
T ss_pred CHHHHHHHHh---ccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHH
Confidence 5543333321 222222111 1112233445566666666666554 11 3333444454444333323333555
Q ss_pred HHHHHhCCCCCC
Q 046775 185 FQQMKSSEINPN 196 (771)
Q Consensus 185 ~~~m~~~g~~p~ 196 (771)
.+.+.+.|..|+
T Consensus 161 v~~Ll~~ga~~~ 172 (201)
T 3hra_A 161 VKLLMENGADQS 172 (201)
T ss_dssp HHHHHHTTCCTT
T ss_pred HHHHHHCCCCCC
Confidence 555566665554
No 282
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=47.98 E-value=5 Score=25.56 Aligned_cols=14 Identities=21% Similarity=0.693 Sum_probs=10.9
Q ss_pred eccccccCccchhh
Q 046775 726 KNLRICVDCHTSFE 739 (771)
Q Consensus 726 kn~r~c~dch~~~k 739 (771)
-|-|||.+||--+-
T Consensus 15 ~~YRvC~~CgkPi~ 28 (44)
T 2lo3_A 15 IQYRVCEKCGKPLA 28 (44)
T ss_dssp CCEEECTTTCCEEE
T ss_pred ccchhhcccCCcch
Confidence 37899999996553
No 283
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=46.45 E-value=1.7e+02 Score=26.65 Aligned_cols=15 Identities=0% Similarity=-0.365 Sum_probs=6.6
Q ss_pred HHhcCCHHHHHHHHH
Q 046775 343 YGKCGHVEDAVKIFK 357 (771)
Q Consensus 343 y~k~g~~~~A~~~f~ 357 (771)
.+..|+.+-...+++
T Consensus 53 A~~~~~~~~v~~Ll~ 67 (241)
T 1k1a_A 53 AVITTLPSVVRLLVT 67 (241)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHH
Confidence 334444444444443
No 284
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.93 E-value=43 Score=34.95 Aligned_cols=96 Identities=14% Similarity=-0.020 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC------CChhHHHHHHHHHHHcCChHHHHHHHHHHHH---CCCCCCHHHHH--
Q 046775 436 AGNSLVNMYAKCGSIDDADRAFSEIPD------RGIVSWSAMIGGLAQHGRGKEALQMFGQMLE---DGVLPNHITLV-- 504 (771)
Q Consensus 436 ~~~~Li~~y~k~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~pd~~t~~-- 504 (771)
+...+.+.|.++|+++.|.+.|.++.. .-+..|-..|..+...+++..|....++... .+-.|+...-.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 556788888888888888888887652 1245666777888888888888888887654 23233332211
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhhC
Q 046775 505 SVLCACNHAGLVAEAKHHFESMEKKFG 531 (771)
Q Consensus 505 ~ll~a~~~~g~~~~a~~~~~~m~~~~~ 531 (771)
.-...+.+.+++.+|.++|-.....+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 112234567888888888877766543
No 285
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=45.47 E-value=23 Score=19.22 Aligned_cols=17 Identities=29% Similarity=0.706 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHh
Q 046775 661 SKEIYAKLDEVSDLLNK 677 (771)
Q Consensus 661 ~~~i~~~l~~l~~~~~~ 677 (771)
.++.|.+|+.|.+++++
T Consensus 3 adelykeledlqerlrk 19 (27)
T 3twe_A 3 ADELYKELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57889999998887765
No 286
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=44.20 E-value=1.1e+02 Score=27.16 Aligned_cols=18 Identities=11% Similarity=0.189 Sum_probs=10.4
Q ss_pred HHhcCChhHHHHHHccCC
Q 046775 141 YAKVGNLEDAVAVFKDIE 158 (771)
Q Consensus 141 y~~~g~~~~A~~~f~~~~ 158 (771)
.+..|+.+....+++.-.
T Consensus 12 A~~~g~~~~v~~ll~~~~ 29 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTT 29 (201)
T ss_dssp HHHTTCHHHHHHHHTCTT
T ss_pred HHHhccHHHHHHHHHcCC
Confidence 345566666666665443
No 287
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=43.65 E-value=3.6e+02 Score=29.49 Aligned_cols=194 Identities=11% Similarity=0.023 Sum_probs=105.7
Q ss_pred CChHHHHHHHHHHhcCCCCCCHhhHH----HHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 046775 378 GLGEEALKLYLEMQDREINPDSFVCS----SLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDA 453 (771)
Q Consensus 378 g~~~~A~~l~~~m~~~g~~p~~~t~~----~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A 453 (771)
.+.+.|..+|....... ..+..... .+.......+...++...+....... .+..+..-.+..-.+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 37788999988876533 22332222 22223334442344444444443332 3333344444455577999999
Q ss_pred HHHHhhCCCCCh--hHHH-HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhh
Q 046775 454 DRAFSEIPDRGI--VSWS-AMIGGLAQHGRGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKF 530 (771)
Q Consensus 454 ~~~f~~~~~~~~--~~~~-~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 530 (771)
...|+.|..... .-|. =+..++...|+.++|..+|+++... . +|-+++.+ .+.|. .+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~--~fYg~lAa-~~Lg~-------------~~ 364 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R--GFYPMVAA-QRIGE-------------EY 364 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C--SHHHHHHH-HHTTC-------------CC
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C--ChHHHHHH-HHcCC-------------CC
Confidence 999999985331 1111 1344667889999999999998752 2 45555533 22221 11
Q ss_pred CCC-----CC-cc-----hHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 046775 531 GIQ-----PM-QE-----HYACMIDILGRAGKFQEAMELVDTMPFQANASVWGALLGAARIYKNVEVGQHAAEML 594 (771)
Q Consensus 531 ~i~-----p~-~~-----~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~ 594 (771)
.+. +. .. .-..-+..|.+.|...+|...+....-..+..-...+.......|..+.+..+..+.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~ 439 (618)
T 1qsa_A 365 ELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (618)
T ss_dssp CCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 111 10 00 111234567788999998877666532333333334444445677788777666543
No 288
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=43.56 E-value=2.2e+02 Score=27.11 Aligned_cols=190 Identities=9% Similarity=0.060 Sum_probs=99.3
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCCChh--hHHH
Q 046775 59 RSVVSWNSLFSCYVHCDFLEEAVCFFKEMVLSGIRPNEFSLSSMINACAGSGDSLLGRKIHGYSIKLGYDSDMF--SANA 136 (771)
Q Consensus 59 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~--~~~~ 136 (771)
+|..-++.|..+ ++.|+.+-+ +.+.+.|..++...-.+.|...+..|+.+.. ..+++.|..++.. ....
T Consensus 27 ~d~~g~t~L~~A-~~~g~~~~v----~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t 97 (285)
T 3kea_A 27 ADVHGHSASYYA-IADNNVRLV----CTLLNAGALKNLLENEFPLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNT 97 (285)
T ss_dssp CCTTSCCHHHHH-HHTTCHHHH----HHHHHTTGGGSCCTTCCHHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCC
T ss_pred cCCCCCCHHHHH-HHcCCHHHH----HHHHhCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCc
Confidence 343334444433 446665443 4444556555544333455566677777644 4455667655432 1223
Q ss_pred HHHHHHhcCChhHHHHHHccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChh-hHHHHHHHhhcCCc
Q 046775 137 LVDMYAKVGNLEDAVAVFKDIEH---PDIVSWNAVIAGCVLHEHNDWALKLFQQMKSSEINPNMF-TYTSALKACAGMEL 212 (771)
Q Consensus 137 Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~ 212 (771)
.+...+..|+.+-+..+++.-.. ++..-|.+.+...+..|+.+ +.+.+.+.|..+... .-.+.|...+..|.
T Consensus 98 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~ 173 (285)
T 3kea_A 98 ALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVS----IVSYFLSEIPSTFDLAILLSCIHITIKNGH 173 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHH----HHHHHHTTSCTTCCCSTHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCccccccCCccHHHHHHHcCh
Confidence 34555677888888888776333 34444445555556667654 344445555444222 33455556667788
Q ss_pred HHHHHHHHHHHHHccCCCChhHHHHHHHhhhcCCChHHHHHHhhhCCCCC
Q 046775 213 KELGRQLHCSLIKMEIKSDPIVGVGLVDMYAKCGSMDEARMIFHLMPEKN 262 (771)
Q Consensus 213 ~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~ 262 (771)
.+.++.+++.-..... .+..-.+..+...++.|+.+-+.-+++.=..++
T Consensus 174 ~~~v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~ 222 (285)
T 3kea_A 174 VDMMILLLDYMTSTNT-NNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY 222 (285)
T ss_dssp HHHHHHHHHHHHHTCT-TCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCST
T ss_pred HHHHHHHHHcCCCCCc-ccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 7776666554332211 111112223444556777777776666543333
No 289
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=42.75 E-value=46 Score=31.45 Aligned_cols=88 Identities=7% Similarity=-0.076 Sum_probs=43.0
Q ss_pred HHhCCChhHHHHHHHHhHHCCCCCCcch-------HHHHHHHHh--cCCCcHHHHHHHHHHHHhCC---------C-CCh
Q 046775 71 YVHCDFLEEAVCFFKEMVLSGIRPNEFS-------LSSMINACA--GSGDSLLGRKIHGYSIKLGY---------D-SDM 131 (771)
Q Consensus 71 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t-------~~~ll~~~~--~~~~~~~a~~i~~~~~~~g~---------~-~~~ 131 (771)
.++.|+.+....+++.+...|..++... .+.|..++. +.|+.+.++.+++.-...+. . .|.
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~ 91 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYY 91 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSE
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccccc
Confidence 3456677766666666666665555332 233333332 45666666555554433110 0 010
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHccCCC
Q 046775 132 FSANALVDMYAKVGNLEDAVAVFKDIEH 159 (771)
Q Consensus 132 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~ 159 (771)
. ..+.+...+..|+.+-+.-+++.-..
T Consensus 92 ~-g~t~L~~A~~~g~~~~v~~Ll~~ga~ 118 (260)
T 3jxi_A 92 R-GQTALHIAIERRCKHYVELLVEKGAD 118 (260)
T ss_dssp E-SBCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred C-CCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence 1 12233444556777666666664433
No 290
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.39 E-value=58 Score=33.98 Aligned_cols=96 Identities=15% Similarity=0.069 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcch----HH
Q 046775 467 SWSAMIGGLAQHGRGKEALQMFGQMLEDGVLPNH--ITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEH----YA 540 (771)
Q Consensus 467 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~----y~ 540 (771)
++..+..-|.+.|+.++|.+.|.++...-..+.. ..+..++..|...+++..+..+.++......-.++... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5677889999999999999999999985444443 36778888999999999999999998765443444222 12
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC
Q 046775 541 CMIDILGRAGKFQEAMELVDTM 562 (771)
Q Consensus 541 ~lv~~l~r~g~~~eA~~~~~~m 562 (771)
+-+-.+...+++.+|-..|-+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 2233345678899988877654
No 291
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=40.58 E-value=2e+02 Score=25.57 Aligned_cols=48 Identities=21% Similarity=0.192 Sum_probs=18.2
Q ss_pred chHHHhHHHHHHHhcCCHHHHHHHHHhcCCCceecHHHHHHHHHHcCC
Q 046775 332 DDYIVNSLIDAYGKCGHVEDAVKIFKESSAVDLVACTSMITAYAQFGL 379 (771)
Q Consensus 332 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 379 (771)
|..+....+...++.|..+....+.+.+..+|...-...+.++.+.+.
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 333333344444444443333333333333333333333333444443
No 292
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=39.52 E-value=2.3e+02 Score=27.72 Aligned_cols=73 Identities=10% Similarity=0.063 Sum_probs=42.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhccc--chHHHHHHHHHHHHhCCCCchhHHHHH
Q 046775 367 CTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLS--AYEQGKQVHVHIIKFGFMSDTFAGNSL 440 (771)
Q Consensus 367 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~--~~~~a~~i~~~~~~~g~~~~~~~~~~L 440 (771)
.+.++.-|...|+.++|.+.++++..-...+ .+....+..+.-+.+ ..+....++..+.+.|+-+.......+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf 243 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGY 243 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 4568888888999999999999886321111 223334444444432 245556666677666655544443333
No 293
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=38.95 E-value=6 Score=21.57 Aligned_cols=13 Identities=54% Similarity=1.485 Sum_probs=9.4
Q ss_pred cccCCcc--CCCCCC
Q 046775 759 HFRNGSC--SCGGYW 771 (771)
Q Consensus 759 ~f~~g~c--sc~d~w 771 (771)
.|.+|.| .||+-|
T Consensus 8 ~fgngfcgdncgnsw 22 (27)
T 2hgo_A 8 NFGNGFCGDNCGNSW 22 (27)
T ss_dssp EETTTEEECSSSCEE
T ss_pred eecCccccCCcCCcc
Confidence 4778888 577766
No 294
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=37.28 E-value=1.3e+02 Score=27.43 Aligned_cols=15 Identities=27% Similarity=0.488 Sum_probs=8.0
Q ss_pred HcCCChHHHHHHHhc
Q 046775 41 AKCGNFIDSRRLFDA 55 (771)
Q Consensus 41 ~~~g~~~~A~~~f~~ 55 (771)
++.|+++....+++.
T Consensus 17 ~~~g~~~~~~~Ll~~ 31 (240)
T 3eu9_A 17 TQYGIYERCRELVEA 31 (240)
T ss_dssp HHTTCHHHHHHHHHT
T ss_pred HHcCChHHHHHHHHc
Confidence 445555555555554
No 295
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=36.72 E-value=3.4e+02 Score=27.22 Aligned_cols=74 Identities=12% Similarity=0.061 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhcc--cchHHHHHHHHHHHHhCCCCchhHHHHHH
Q 046775 367 CTSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANL--SAYEQGKQVHVHIIKFGFMSDTFAGNSLV 441 (771)
Q Consensus 367 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~--~~~~~a~~i~~~~~~~g~~~~~~~~~~Li 441 (771)
.+.++.-|...|+.++|.+.++++..-...+ .+....+..+.-+. ...+...+++..+.+.|+-+.......+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~ 295 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYE 295 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 4667778888888888888888875321111 22233333344332 23344555666666655544444443333
No 296
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=36.63 E-value=1.8e+02 Score=24.11 Aligned_cols=64 Identities=17% Similarity=0.292 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCh---hHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCH
Q 046775 437 GNSLVNMYAKCGSIDDADRAFSEIPDRGI---VSWSAMIGGLAQHGR--GKEALQMFGQMLEDGVLPNH 500 (771)
Q Consensus 437 ~~~Li~~y~k~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~pd~ 500 (771)
.+.++.-|...|+.++|.+.++++..|.- +...++..++-+.+. -+.+..++..+...|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 46688889999999999999999886642 344555556555442 35577888888877754433
No 297
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=35.95 E-value=1.8e+02 Score=26.50 Aligned_cols=19 Identities=16% Similarity=0.211 Sum_probs=12.1
Q ss_pred HHHHHcCCChHHHHHHHhc
Q 046775 37 VVMYAKCGNFIDSRRLFDA 55 (771)
Q Consensus 37 l~~y~~~g~~~~A~~~f~~ 55 (771)
+...++.|+.+....+++.
T Consensus 7 L~~A~~~g~~~~v~~Ll~~ 25 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLLKF 25 (232)
T ss_dssp HHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHh
Confidence 3445566777777777765
No 298
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=35.76 E-value=2.4e+02 Score=25.20 Aligned_cols=92 Identities=12% Similarity=0.082 Sum_probs=50.3
Q ss_pred CCHhhHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHH
Q 046775 397 PDSFVCSSLLNACANLSAYEQGKQVHVHIIKFGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIPDRGIVSWSAMIGGLA 476 (771)
Q Consensus 397 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~ 476 (771)
+|...-...+.+....+..+....+.. +. -.++..+-...+.+.++.|..+....+...+..++...-...+.++.
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l---~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~ 168 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAVEPLIK-AL---KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALG 168 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHH-HT---TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHH-HH---hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 444444555555555554332222222 22 24566666666666676666544444444455666655556666677
Q ss_pred HcCChHHHHHHHHHHHH
Q 046775 477 QHGRGKEALQMFGQMLE 493 (771)
Q Consensus 477 ~~g~~~~A~~l~~~m~~ 493 (771)
..|. .+++..+.++.+
T Consensus 169 ~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 169 EIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHCS-HHHHHHHHHHHH
T ss_pred HhCc-hhHHHHHHHHHh
Confidence 6665 566666766665
No 299
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=35.03 E-value=12 Score=27.05 Aligned_cols=20 Identities=20% Similarity=0.478 Sum_probs=17.0
Q ss_pred ceEEEecCCccccccCCccC
Q 046775 747 REIIVRDVNRFHHFRNGSCS 766 (771)
Q Consensus 747 r~i~~rd~~rfh~f~~g~cs 766 (771)
..|=+.|.+-.|+||||+-+
T Consensus 8 k~v~LkDGstvyiFKDGKMa 27 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMG 27 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEE
T ss_pred eeEecCCCcEEEEEcCCcee
Confidence 45778999999999999864
No 300
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=33.36 E-value=4e+02 Score=27.07 Aligned_cols=18 Identities=22% Similarity=0.159 Sum_probs=8.9
Q ss_pred HHHHhcCCHHHHHHHHHh
Q 046775 341 DAYGKCGHVEDAVKIFKE 358 (771)
Q Consensus 341 ~~y~k~g~~~~A~~~f~~ 358 (771)
...++.|+.+-+..+++.
T Consensus 217 ~~A~~~~~~~~~~~Ll~~ 234 (437)
T 1n11_A 217 HIAAKQNQVEVARSLLQY 234 (437)
T ss_dssp HHHHHTTCHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHc
Confidence 334445555555555543
No 301
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=33.22 E-value=2.4e+02 Score=25.48 Aligned_cols=66 Identities=11% Similarity=0.023 Sum_probs=45.6
Q ss_pred hHHHHHHHHHh---CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCC-----hhHHHHHHHHHHHhcCCC
Q 046775 265 AWNIVISGHLQ---NGGDMEAASLFPWMYREGVGFDQTTLSTVLKSVASFQA-----IGVCKQVHALSVKTAFES 331 (771)
Q Consensus 265 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~-----~~~a~~i~~~~~~~g~~~ 331 (771)
..-.+|+++.+ -.+++.|+-.+-+|++.| .|....-..++.+.-..|. +..+...++...+.|++-
T Consensus 13 ~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE 86 (204)
T 2r9g_A 13 AHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPE 86 (204)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTT
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCH
Confidence 34456677654 589999999999999999 7777766777777666553 344555555556666543
No 302
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=33.19 E-value=81 Score=29.64 Aligned_cols=24 Identities=13% Similarity=-0.014 Sum_probs=12.8
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCC
Q 046775 173 VLHEHNDWALKLFQQMKSSEINPN 196 (771)
Q Consensus 173 ~~~g~~~~A~~l~~~m~~~g~~p~ 196 (771)
++.|+.+....+++.+.+.|..++
T Consensus 13 ~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 13 VSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHhCCHHHHHHHHHHHHhcCCCcc
Confidence 445666655555555555554444
No 303
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.96 E-value=4.2e+02 Score=28.08 Aligned_cols=62 Identities=16% Similarity=0.050 Sum_probs=44.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh-hHHHH-------HHHHHHHcCChHHHHHHHHHHHHC
Q 046775 433 DTFAGNSLVNMYAKCGSIDDADRAFSEIPDRGI-VSWSA-------MIGGLAQHGRGKEALQMFGQMLED 494 (771)
Q Consensus 433 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~-------li~~~~~~g~~~~A~~l~~~m~~~ 494 (771)
-..+.|.|+..|...+.++.|..+..+..-|.. .+.+- +...++..+++.+|.+.|......
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 356778888889989999999998888764432 22222 345567788999999888887764
No 304
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=32.44 E-value=1.9e+02 Score=24.90 Aligned_cols=64 Identities=17% Similarity=0.272 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCC---hhHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCH
Q 046775 437 GNSLVNMYAKCGSIDDADRAFSEIPDRG---IVSWSAMIGGLAQHGR--GKEALQMFGQMLEDGVLPNH 500 (771)
Q Consensus 437 ~~~Li~~y~k~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~pd~ 500 (771)
.+.++.-|...|+.++|.+.++++..|. .+...++..++-+.+. -+.+..++..+...|+-+..
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 4678888999999999999999998664 2344555556555432 34567788888777654433
No 305
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=32.21 E-value=2.8e+02 Score=25.03 Aligned_cols=18 Identities=11% Similarity=0.019 Sum_probs=8.0
Q ss_pred HhhhcCCChHHHHHHhhh
Q 046775 240 DMYAKCGSMDEARMIFHL 257 (771)
Q Consensus 240 ~~y~~~g~~~~A~~~f~~ 257 (771)
...++.|+.+-+..+++.
T Consensus 47 ~~A~~~~~~~~v~~Ll~~ 64 (240)
T 3eu9_A 47 HWAAINNRIDLVKYYISK 64 (240)
T ss_dssp HHHHHTTCHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHc
Confidence 334444554444444443
No 306
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=32.13 E-value=2.4e+02 Score=24.21 Aligned_cols=76 Identities=11% Similarity=0.065 Sum_probs=52.4
Q ss_pred HHHHHHHHhCC-CCCCHh---HHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCchhHHHHHHHHHhcCCchhHHHHHH
Q 046775 553 QEAMELVDTMP-FQANAS---VWGALLGAARIYKNVEVGQHAAEMLFA--IEPEKSSTHVLLSNIYASAGMWDNVAKVRR 626 (771)
Q Consensus 553 ~eA~~~~~~m~-~~p~~~---~~~~ll~a~~~~~~~~~a~~~~~~~~~--l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 626 (771)
+.+...|..-+ .+.|.. +|-.++..| .+ ...+++.+.. +.-.-+..|...+..+...|++.+|.+|++
T Consensus 52 Erc~~~f~~~~~YknD~RyLklWl~ya~~~---~d---p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 125 (152)
T 4a1g_A 52 EHLMKEFLDKKKYHNDPRFISYCLKFAEYN---SD---LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQ 125 (152)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHTTB---SC---HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhc---CC---HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44555555543 445544 555555433 33 6777777766 345567789999999999999999999999
Q ss_pred HHHhCCCc
Q 046775 627 FMKDNKLK 634 (771)
Q Consensus 627 ~m~~~g~~ 634 (771)
.-.+++.+
T Consensus 126 ~Gi~~~A~ 133 (152)
T 4a1g_A 126 RGIQNQAE 133 (152)
T ss_dssp HHHHTTCB
T ss_pred HHHHcCCc
Confidence 87777653
No 307
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=31.39 E-value=3.3e+02 Score=26.46 Aligned_cols=246 Identities=11% Similarity=0.082 Sum_probs=111.1
Q ss_pred hHHHHHHHHHcCCChHHHHHHHhcCCCCCcc----hHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcch---HHHHHH
Q 046775 32 VANSLVVMYAKCGNFIDSRRLFDAIPERSVV----SWNSLFSCYVHCDFLEEAVCFFKEMVLSGIRPNEFS---LSSMIN 104 (771)
Q Consensus 32 ~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~----~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~ll~ 104 (771)
-.++++..-++.|+++-.+.+++.=..+|.. -++.|.-+ ++.|+.+ +.+.+.+.|..|+... ...+.
T Consensus 24 ~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A-~~~g~~~----iv~~Ll~~ga~~~~~~~~~~~~~~- 97 (337)
T 4g8k_A 24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNA-VQMSRED----IVELLLRHGADPVLRKKNGATPFI- 97 (337)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHH-HHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHH-
T ss_pred CCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHH-HHcCCHH----HHHHHHHcCCchhhhccCCCchhH-
Confidence 3456666778889999998888864443322 23444433 4455543 4444555665554321 11111
Q ss_pred HHhcCCCcHHHHHHHHHHHHhCCCCCh---hhHHHHHHHHHhcCChhHHHHHHccCCCCC-------------cccHHHH
Q 046775 105 ACAGSGDSLLGRKIHGYSIKLGYDSDM---FSANALVDMYAKVGNLEDAVAVFKDIEHPD-------------IVSWNAV 168 (771)
Q Consensus 105 ~~~~~~~~~~a~~i~~~~~~~g~~~~~---~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~-------------~~~~n~l 168 (771)
.....+... ........+...+. .-.+. +...+..|..+-+..+++.-..++ ..-++.|
T Consensus 98 ~~~~~~~~~----~~~~~~~~~~~~~~~d~~g~t~-l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L 172 (337)
T 4g8k_A 98 LAAIAGSVK----LLKLFLSKGADVNECDFYGFTA-FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATAL 172 (337)
T ss_dssp HHHHHTCHH----HHHHHHTTTCCTTCBCTTCCBH-HHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHH
T ss_pred HHHhcccch----hhHHhhhccchhhhhccCCCCH-HHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHH
Confidence 111112221 22223333332221 11222 333456677766666665432211 1112334
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCCChh---hHHHHHHH--hhcCCcHHHHHHHHHHHHHccCCCChh--HHHHHHHh
Q 046775 169 IAGCVLHEHNDWALKLFQQMKSSEINPNMF---TYTSALKA--CAGMELKELGRQLHCSLIKMEIKSDPI--VGVGLVDM 241 (771)
Q Consensus 169 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~a--~~~~~~~~~a~~l~~~~~~~g~~~~~~--~~~~Li~~ 241 (771)
.. .++.|+.+-+..++. +.|..++.. -.+.+..+ ....+.. ..+...+++.|..++.. ...+-+..
T Consensus 173 ~~-A~~~g~~~~v~~LL~---~~gad~n~~d~~g~t~l~~~~~~~~~~~~---~~i~~lLl~~gad~n~~d~~g~t~L~~ 245 (337)
T 4g8k_A 173 MD-AAEKGHVEVLKILLD---EMGADVNACDNMGRNALIHALLSSDDSDV---EAITHLLLDHGADVNVRGERGKTPLIL 245 (337)
T ss_dssp HH-HHHHTCHHHHHHHHH---HSCCCTTCCCTTSCCHHHHHHHHSCTTTH---HHHHHHHHHTTCCTTCCCGGGCCHHHH
T ss_pred HH-HHHCCCHHHHHHHHh---ccCCCcCccCCCCCcHHHHHHHHcCcccH---HHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence 33 345566554433332 234444321 11222222 2222333 33445566777655432 12233455
Q ss_pred hhcCCChHHHHHHhhhCC----CCCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhh
Q 046775 242 YAKCGSMDEARMIFHLMP----EKNLIAWNIVISGHLQNGGDMEAASLFPWMYREGVGFDQTT 300 (771)
Q Consensus 242 y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t 300 (771)
.+..|..+....+++.-. .+|..-++.|..+ ++.|.. ++.+.+++.|..+|..+
T Consensus 246 a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A-~~~g~~----~iv~~Ll~~GAd~n~~~ 303 (337)
T 4g8k_A 246 AVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA-VELKLK----KIAELLCKRGASTDCGD 303 (337)
T ss_dssp HHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHH-HHTTCH----HHHHHHHTTSCSSTTCC
T ss_pred HHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHH-HHcCCH----HHHHHHHHCCCCCCCCC
Confidence 567788877777765421 1233333444333 344443 33444556676666554
No 308
>1j0t_A MIH, MOLT-inhibiting hormone; alpha-helical protein, hormone/growth factor complex; NMR {Marsupenaeus japonicus} SCOP: a.163.1.1
Probab=31.35 E-value=4.9 Score=30.20 Aligned_cols=14 Identities=43% Similarity=1.004 Sum_probs=11.3
Q ss_pred eccccccCccchhh
Q 046775 726 KNLRICVDCHTSFE 739 (771)
Q Consensus 726 kn~r~c~dch~~~k 739 (771)
|--|||.|||+...
T Consensus 20 kldrVCdDCyNLyR 33 (78)
T 1j0t_A 20 KVVRVCEDCTNIFR 33 (78)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 45699999998764
No 309
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=31.01 E-value=2.6e+02 Score=25.20 Aligned_cols=54 Identities=13% Similarity=0.057 Sum_probs=26.6
Q ss_pred HHHHHcCCChHHHHHHHhcCCC----CCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCC
Q 046775 37 VVMYAKCGNFIDSRRLFDAIPE----RSVVSWNSLFSCYVHCDFLEEAVCFFKEMVLSGIRPN 95 (771)
Q Consensus 37 l~~y~~~g~~~~A~~~f~~~~~----~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 95 (771)
+...++.|+++....+++.-+. +|..-++.|..+ +..|+. ++++.+.+.|..++
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~g~~----~~v~~Ll~~g~~~~ 67 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWA-CSAGHT----EIVEFLLQLGVPVN 67 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHH-HHHTCH----HHHHHHHHTTCCSC
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHH-HHcCcH----HHHHHHHHhCCCCC
Confidence 4455667777777777765332 233333333333 334443 33444445555444
No 310
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=30.48 E-value=2.3e+02 Score=23.45 Aligned_cols=66 Identities=14% Similarity=0.180 Sum_probs=43.5
Q ss_pred HhHHHHHHHhcCCHHHHHHHHHhcCCCce---ecHHHHHHHHHHcCC--hHHHHHHHHHHhcCCCCCCHhh
Q 046775 336 VNSLIDAYGKCGHVEDAVKIFKESSAVDL---VACTSMITAYAQFGL--GEEALKLYLEMQDREINPDSFV 401 (771)
Q Consensus 336 ~~~Li~~y~k~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t 401 (771)
.+.++.-|...|+.++|.+.++++..|.- +...++..++-+.+. .+....++..+...|+-+....
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 35678888889999999999998876522 333444445555432 3567788888877765554443
No 311
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=29.72 E-value=1.4e+02 Score=29.42 Aligned_cols=42 Identities=19% Similarity=0.140 Sum_probs=34.4
Q ss_pred HHhCCCCCCHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 046775 559 VDTMPFQANAS--VWGALLGAARIYKNVEVGQHAAEMLFAIEPE 600 (771)
Q Consensus 559 ~~~m~~~p~~~--~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 600 (771)
|...+++|... ++++-++.+.+++|+.-|...+++++++.|.
T Consensus 187 FT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 230 (320)
T 3mkr_B 187 FTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK 230 (320)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 44445677533 7888889999999999999999999999884
No 312
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=29.08 E-value=2.9e+02 Score=24.10 Aligned_cols=76 Identities=11% Similarity=0.110 Sum_probs=52.6
Q ss_pred HHHHHHHHhCC-CCCCHh---HHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCchhHHHHHHHHHhcCCchhHHHHHH
Q 046775 553 QEAMELVDTMP-FQANAS---VWGALLGAARIYKNVEVGQHAAEMLFA--IEPEKSSTHVLLSNIYASAGMWDNVAKVRR 626 (771)
Q Consensus 553 ~eA~~~~~~m~-~~p~~~---~~~~ll~a~~~~~~~~~a~~~~~~~~~--l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 626 (771)
+.+...|..-+ .+.|.. +|-.++..| ++ ...+++.+.. +.-.-+..|...+..|...|+|.+|.+|++
T Consensus 47 Erc~~~f~~~~~YknD~RyLklWl~ya~~~---~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~ 120 (164)
T 2wvi_A 47 ERAVEALQGEKRYYSDPRFLNLWLKLGRLC---NE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQ 120 (164)
T ss_dssp HHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---SC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhhhhhhccCHHHHHHHHHHHHhc---CC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44444444443 444544 666555554 33 5566777665 455677889999999999999999999999
Q ss_pred HHHhCCCc
Q 046775 627 FMKDNKLK 634 (771)
Q Consensus 627 ~m~~~g~~ 634 (771)
.-.+++.+
T Consensus 121 ~Gi~~~A~ 128 (164)
T 2wvi_A 121 EGIQQKAE 128 (164)
T ss_dssp HHHHTTCB
T ss_pred HHHHcCCC
Confidence 88777653
No 313
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=28.86 E-value=1.6e+02 Score=26.87 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=7.9
Q ss_pred HHhcCChhHHHHHHcc
Q 046775 141 YAKVGNLEDAVAVFKD 156 (771)
Q Consensus 141 y~~~g~~~~A~~~f~~ 156 (771)
.+..|+.+-+..+++.
T Consensus 84 A~~~~~~~~~~~Ll~~ 99 (237)
T 3b7b_A 84 AAKKGHYEVVQYLLSN 99 (237)
T ss_dssp HHHTTCHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHhC
Confidence 3444555555555544
No 314
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=27.51 E-value=2.6e+02 Score=26.13 Aligned_cols=22 Identities=18% Similarity=0.054 Sum_probs=14.4
Q ss_pred HHHHHHcCChHHHHHHHHHHhc
Q 046775 371 ITAYAQFGLGEEALKLYLEMQD 392 (771)
Q Consensus 371 i~~~~~~g~~~~A~~l~~~m~~ 392 (771)
+..+....++++|+++.++...
T Consensus 25 LDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 4556667777777777766543
No 315
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=27.16 E-value=1.9e+02 Score=26.13 Aligned_cols=47 Identities=9% Similarity=-0.054 Sum_probs=35.9
Q ss_pred HHHHHHHH---hCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCC
Q 046775 267 NIVISGHL---QNGGDMEAASLFPWMYREGVGFDQTTLSTVLKSVASFQA 313 (771)
Q Consensus 267 ~~li~~~~---~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 313 (771)
-.+|+++. +-.+++.|+-.+-+|++.|..|....-..++.+.-..|.
T Consensus 8 Yd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGl 57 (201)
T 3bge_A 8 YDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGN 57 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 34566665 458899999999999999988887777777777655553
No 316
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=27.14 E-value=63 Score=25.41 Aligned_cols=37 Identities=16% Similarity=0.100 Sum_probs=30.5
Q ss_pred CChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHH
Q 046775 44 GNFIDSRRLFDAIPERSVVSWNSLFSCYVHCDFLEEA 80 (771)
Q Consensus 44 g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~A 80 (771)
.+.+.|+++++.++.+...+|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 4688999999999999999999999999776665444
No 317
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=26.22 E-value=3.7e+02 Score=24.37 Aligned_cols=31 Identities=16% Similarity=0.031 Sum_probs=14.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 046775 468 WSAMIGGLAQHGRGKEALQMFGQMLEDGVLP 498 (771)
Q Consensus 468 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 498 (771)
|..-...+...|++++|.++|+.-++.+-+|
T Consensus 118 Ye~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 118 YEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3344444444455555555555544444444
No 318
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=25.31 E-value=34 Score=26.28 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=23.7
Q ss_pred cchHHHHHHHHHHHHHHHhcCcccCCccc
Q 046775 659 ARSKEIYAKLDEVSDLLNKAGYVPMVETD 687 (771)
Q Consensus 659 ~~~~~i~~~l~~l~~~~~~~g~~p~~~~~ 687 (771)
....+|...+++-..+++..||.||...+
T Consensus 13 gdlirIl~~ieekinELk~dG~ePDIiL~ 41 (103)
T 2pk8_A 13 GDLIRILGEIEEKMNELKMDGFNPDIILF 41 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 34567888888999999999999997653
No 319
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=25.12 E-value=1.9e+02 Score=27.02 Aligned_cols=87 Identities=11% Similarity=0.021 Sum_probs=45.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH--CCCCC----CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcchHHHHHH
Q 046775 471 MIGGLAQHGRGKEALQMFGQMLE--DGVLP----NHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEHYACMID 544 (771)
Q Consensus 471 li~~~~~~g~~~~A~~l~~~m~~--~g~~p----d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~ 544 (771)
-+..+..+.++++|+++.++... .++++ +.......+..-.....-.-+..+.+.+. -.++...-...+.
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~----~~~~~~~~r~~v~ 99 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL----SSNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH----TCSSHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCHHHHHHHHH
Confidence 35566677778888777776554 12332 11122222222222111222222333331 1444555666778
Q ss_pred HHhhcCCHHHHHHHHHh
Q 046775 545 ILGRAGKFQEAMELVDT 561 (771)
Q Consensus 545 ~l~r~g~~~eA~~~~~~ 561 (771)
.|.|-|+-++|.++|-+
T Consensus 100 ~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHH
Confidence 88899999999888754
No 320
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=25.06 E-value=2.2e+02 Score=28.19 Aligned_cols=15 Identities=0% Similarity=0.029 Sum_probs=7.7
Q ss_pred HhcCCHHHHHHHHhh
Q 046775 445 AKCGSIDDADRAFSE 459 (771)
Q Consensus 445 ~k~g~~~~A~~~f~~ 459 (771)
++.|+.+-+..+++.
T Consensus 252 ~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 252 VRAAMVLLTKELLQK 266 (364)
T ss_dssp HHTCCHHHHHHHHHH
T ss_pred HHhChHHHHHHHHHc
Confidence 344555555555554
No 321
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=24.67 E-value=5.6e+02 Score=25.99 Aligned_cols=214 Identities=11% Similarity=0.013 Sum_probs=99.7
Q ss_pred HHHHhhcccchHHHHHHHHHHHHhCCC-----CchhHHHHHHHHHHhcCCHHHHHHHHhhCC------CCCh--hHHH--
Q 046775 405 LLNACANLSAYEQGKQVHVHIIKFGFM-----SDTFAGNSLVNMYAKCGSIDDADRAFSEIP------DRGI--VSWS-- 469 (771)
Q Consensus 405 ll~a~~~~~~~~~a~~i~~~~~~~g~~-----~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~------~~~~--~~~~-- 469 (771)
+...+...|++.+|..++..+.+.--. .-..++-.-+.+|...|++..+...+.... .+++ ..--
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~ 184 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDL 184 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHH
Confidence 444555555566655555554432111 112334445566666666666665554332 0111 1111
Q ss_pred HHHHHHH-HcCChHHHHHHHHHHHHC---CCCCCHHH--HHHHHHHHhccCcHHHHHHHHH-HHHHhhCCCCCcchHHHH
Q 046775 470 AMIGGLA-QHGRGKEALQMFGQMLED---GVLPNHIT--LVSVLCACNHAGLVAEAKHHFE-SMEKKFGIQPMQEHYACM 542 (771)
Q Consensus 470 ~li~~~~-~~g~~~~A~~l~~~m~~~---g~~pd~~t--~~~ll~a~~~~g~~~~a~~~~~-~m~~~~~i~p~~~~y~~l 542 (771)
.-.-.+. ..+++.+|...|-+.... -..|.... ...++.+..... ..+-..++. .....| ..|....+..+
T Consensus 185 ~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~-r~el~~~l~~~~~~~~-~~pei~~l~~L 262 (394)
T 3txn_A 185 QSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQ-SDDVNQLVSGKLAITY-SGRDIDAMKSV 262 (394)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHSHHHHTT-CSHHHHHHHHH
T ss_pred HhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCC-HHHHHHHhcccccccc-CCccHHHHHHH
Confidence 1112234 567777777776665421 01121111 112233332222 122222221 111223 34555555556
Q ss_pred HHHHhhcCCHHHHHHHHHhCC--CCCCHhH---HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 046775 543 IDILGRAGKFQEAMELVDTMP--FQANASV---WGALLGAARIYKNVEVGQHAAEMLFAIEPEKSSTHVLLSNIYASAGM 617 (771)
Q Consensus 543 v~~l~r~g~~~eA~~~~~~m~--~~p~~~~---~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 617 (771)
+.++ +.|++.+..++++... +..|... |..|....+ +....++ ..|-.......++....- .
T Consensus 263 ~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir--------~~~L~~i--~~pYsrIsl~~iA~~l~l--s 329 (394)
T 3txn_A 263 AEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTML--------EQNLCRI--IEPYSRVQVAHVAESIQL--P 329 (394)
T ss_dssp HHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHH--------HHHHHHH--HTTCSEEEHHHHHHHHTC--C
T ss_pred HHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH--------HHHHHHH--hHhhceeeHHHHHHHHCc--C
Confidence 6554 5678888777777653 4445542 222222211 2222223 356666666666655543 4
Q ss_pred chhHHHHHHHHHhCCC
Q 046775 618 WDNVAKVRRFMKDNKL 633 (771)
Q Consensus 618 ~~~a~~~~~~m~~~g~ 633 (771)
.+++......|...|.
T Consensus 330 ~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 330 MPQVEKKLSQMILDKK 345 (394)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHCCC
Confidence 6788888888877764
No 322
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=24.15 E-value=3.3e+02 Score=24.82 Aligned_cols=69 Identities=13% Similarity=0.033 Sum_probs=47.1
Q ss_pred CeehHHHHHHHHHh---CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCC-----hhHHHHHHHHHHHhcCC
Q 046775 262 NLIAWNIVISGHLQ---NGGDMEAASLFPWMYREGVGFDQTTLSTVLKSVASFQA-----IGVCKQVHALSVKTAFE 330 (771)
Q Consensus 262 ~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~-----~~~a~~i~~~~~~~g~~ 330 (771)
+-...-.+|+++.+ -.+++.|+-.+-+|++.|..|....-..++.+.-..|. +..+...++...+.|++
T Consensus 31 ~Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 31 NGQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 33445556777754 58899999999999999988888877777777665553 34455555555555543
No 323
>3syn_E ATP-binding protein YLXH; SRP GTPase, flagellum, protein transport, biosynthetic prote GTPase activating protein, type 3 secretion system; HET: GDP; 3.06A {Bacillus subtilis}
Probab=23.74 E-value=38 Score=17.68 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=14.0
Q ss_pred cCCchhHHHHHHHHHhC
Q 046775 615 AGMWDNVAKVRRFMKDN 631 (771)
Q Consensus 615 ~g~~~~a~~~~~~m~~~ 631 (771)
.++++.|..+|.+|.++
T Consensus 3 mnrydqaatlrakmekr 19 (23)
T 3syn_E 3 MNRYDQAATLRAKMEKR 19 (26)
T ss_pred cchHHHHHHHHHHHHHH
Confidence 46789999999999765
No 324
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=23.48 E-value=3e+02 Score=27.18 Aligned_cols=49 Identities=14% Similarity=0.028 Sum_probs=20.8
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCce-ecHHHHHHHHHHcCChHHHHHHHHH
Q 046775 340 IDAYGKCGHVEDAVKIFKESSAVDL-VACTSMITAYAQFGLGEEALKLYLE 389 (771)
Q Consensus 340 i~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~ 389 (771)
+...+..|+.+-+.-+++.-...+. .-++. +..-+..|+.+-+..+++.
T Consensus 57 L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~ 106 (364)
T 3ljn_A 57 LHLACKFGCVDTAKYLASVGEVHSLWHGQKP-IHLAVMANKTDLVVALVEG 106 (364)
T ss_dssp HHHHHHHCCHHHHHHHHHHCCCCCCBTTBCH-HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCccccCCCCH-HHHHHHcCCHHHHHHHHHh
Confidence 3344445555555555554333222 11222 2223344555444444443
No 325
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=23.20 E-value=2.3e+02 Score=25.61 Aligned_cols=84 Identities=15% Similarity=0.077 Sum_probs=37.8
Q ss_pred HHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCCChh--hHHHHHHHHHhcC
Q 046775 68 FSCYVHCDFLEEAVCFFKEMVLSGIRPNEFSLSSMINACAGSGDSLLGRKIHGYSIKLGYDSDMF--SANALVDMYAKVG 145 (771)
Q Consensus 68 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~--~~~~Li~~y~~~g 145 (771)
+...++.|+.+....+++.-...--.+|..-.+.+..+ +..|+.+ +...+++.|..++.. .....+...+..|
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 84 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWA-CSAGHTE----IVEFLLQLGVPVNDKDDAGWSPLHIAASAG 84 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHH-HHHTCHH----HHHHHHHTTCCSCCCCTTSCCHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHH-HHcCcHH----HHHHHHHhCCCCCCcCCCCCCHHHHHHHcC
Confidence 44556677777776666553221112232223333333 3344443 344455556544321 1112233344556
Q ss_pred ChhHHHHHHcc
Q 046775 146 NLEDAVAVFKD 156 (771)
Q Consensus 146 ~~~~A~~~f~~ 156 (771)
+.+-+..+++.
T Consensus 85 ~~~~v~~Ll~~ 95 (231)
T 3aji_A 85 XDEIVKALLVK 95 (231)
T ss_dssp CHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 66655555554
No 326
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=23.08 E-value=4.1e+02 Score=23.87 Aligned_cols=36 Identities=17% Similarity=0.187 Sum_probs=17.6
Q ss_pred HHHHhCCCCChh--hHHHHHHHHHcCCChHHHHHHHhc
Q 046775 20 IVVFTGFDSDEF--VANSLVVMYAKCGNFIDSRRLFDA 55 (771)
Q Consensus 20 ~~~~~g~~~~~~--~~~~ll~~y~~~g~~~~A~~~f~~ 55 (771)
.+++.|..++.. ...+.+...++.|+.+-+..+++.
T Consensus 29 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 66 (237)
T 3b7b_A 29 MLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKA 66 (237)
T ss_dssp HHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhC
Confidence 345555544321 122334444556666666666654
No 327
>3a8g_A NitrIle hydratase subunit alpha; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 3a8h_A 3a8l_A 3a8o_A 2zpb_A 2ahj_A 2cyz_A 2cz6_A 2cz7_A 2d0q_A 2cz1_A 2zpe_A 2zpf_A 2zpg_A 2zph_A 2zpi_A 2qdy_A 3a8m_A 2zcf_A 1ahj_A 2cz0_A*
Probab=22.96 E-value=62 Score=29.13 Aligned_cols=78 Identities=18% Similarity=0.221 Sum_probs=53.2
Q ss_pred CCccchHHHHHHHHHHHHHHHhcCcccCCcc------ccCC--------------cchhhhhhhhccccHHHHHHccccc
Q 046775 656 RSHARSKEIYAKLDEVSDLLNKAGYVPMVET------DLHD--------------VEESEKEQLLYHHSEKLAVAFGLIA 715 (771)
Q Consensus 656 ~~h~~~~~i~~~l~~l~~~~~~~g~~p~~~~------~~~~--------------~~~~~~~~~~~~hse~la~~~~~~~ 715 (771)
..|....++-....-|...+.+.|+++.... .-+. +|++=|..+|.--+.-++- +|+ .
T Consensus 11 ~~~~~~~~~~~r~~Al~~ll~ekG~i~~~~~~~~~~~~e~~~~P~~GA~vVArAW~DP~Fk~rLL~D~~aAi~e-lG~-~ 88 (207)
T 3a8g_A 11 NAAPAQAPVSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWTDPEFRQLLLTDGTAAVAQ-YGY-L 88 (207)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTCSCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHCHHHHHHHHHCHHHHHHH-TTC-C
T ss_pred CccccccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcccCCccccEEeeehhCCHHHHHHHHHCHHHHHHH-cCC-C
Confidence 3344455566666788888999999986422 1111 3456677777776666664 675 4
Q ss_pred CCCCCeEEEee------ccccccCcc
Q 046775 716 TPPGATIRVKK------NLRICVDCH 735 (771)
Q Consensus 716 ~~~~~~~~~~k------n~r~c~dch 735 (771)
.|+|..|+++. |+-||.=|-
T Consensus 89 g~~g~~l~vVENTp~vHn~vVCTLCS 114 (207)
T 3a8g_A 89 GPQGEYIVAVEDTPTLKNVIVCSLAA 114 (207)
T ss_dssp BTTBSEEEEEECBTTEEEEEECTTSC
T ss_pred CCCCCeEEEEecCCCcEEEEEeeccc
Confidence 78999999985 688888775
No 328
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=22.25 E-value=4.6e+02 Score=25.69 Aligned_cols=110 Identities=16% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHhccCChhHHHHHHHHHHHhcCCCchHHHhHHHHHHHh----cCCHHHHHHHHHh-
Q 046775 284 SLFPWMYREGVGFDQTTLSTVLKSVASFQAIGVCKQVHALSVKTAFESDDYIVNSLIDAYGK----CGHVEDAVKIFKE- 358 (771)
Q Consensus 284 ~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~- 358 (771)
++++.+.+.|+.|..+++..++..+++.=.++.+.++++.+...|...-..+.-+++..+.+ +.+.++....++.
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~ 288 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKST 288 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Q ss_pred cCCCceecHHHHHHHHHHcCChH---HHHHHHHHHhcC
Q 046775 359 SSAVDLVACTSMITAYAQFGLGE---EALKLYLEMQDR 393 (771)
Q Consensus 359 ~~~~~~~~~~~li~~~~~~g~~~---~A~~l~~~m~~~ 393 (771)
++..+......+|.--......+ +-..-|..|+++
T Consensus 289 ~p~~~~~di~~li~~A~~l~~s~~l~~~e~ey~~l~~~ 326 (331)
T 3qye_A 289 LPNLGLVQMEKTINQVFEMDIAKQLQAYEVEYHVLQEE 326 (331)
T ss_dssp TTCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
No 329
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis}
Probab=21.90 E-value=4.6e+02 Score=30.04 Aligned_cols=147 Identities=12% Similarity=0.130 Sum_probs=74.7
Q ss_pred HHHHHHHHHcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCCcch-HHHHHHH
Q 046775 469 SAMIGGLAQHG--RGKEALQMFGQMLEDGVLPNHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPMQEH-YACMIDI 545 (771)
Q Consensus 469 ~~li~~~~~~g--~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~-y~~lv~~ 545 (771)
|.++...+..| -.+.|.+.|++ . ..|...-.+-|.++...+. ......++...+.+.-.|.+.. |-.+. +
T Consensus 680 ~~~l~~l~~~~~~~~~~a~~~~~~--~---a~nmt~~~~al~~l~~~~~-~~~~~~~~~f~~~~~~~~~~~~k~~~~~-a 752 (867)
T 2gtq_A 680 NVCRAFVLRADPAHIETVAEKYGE--M---AQNMTHEWGILSAVNGNES-DTRNRLLAQFADKFSDDALVMDKYFALV-G 752 (867)
T ss_dssp HHHHHHHHHHCTTHHHHHHHTHHH--H---CSSHHHHHHHHHHHTTCCS-HHHHHHHHHHHHHTTTCHHHHHHHHHHH-H
T ss_pred HHHHHHHHhcCccHHHHHHHHHHH--h---CCCHhHHHHHHHHHHhcCc-ccHHHHHHHHHHHHcCCchHHHHHHHHH-h
Confidence 44455455554 12234444442 1 2344444444556666543 3444556666665555555433 33333 2
Q ss_pred HhhcC-CHHHHHHHHHhCCCCC-CHhHHHHHHHHHHh-----cCCHHHH-HHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 046775 546 LGRAG-KFQEAMELVDTMPFQA-NASVWGALLGAARI-----YKNVEVG-QHAAEMLFAIEPEKSSTHVLLSNIYASAGM 617 (771)
Q Consensus 546 l~r~g-~~~eA~~~~~~m~~~p-~~~~~~~ll~a~~~-----~~~~~~a-~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 617 (771)
..+.. -++...+++..-.+.+ ++--..+|+++... |.....| .-+++.++++++-||..-..|...+..-.+
T Consensus 753 ~~~~~~~~~~v~~l~~~~~f~~~npn~~r~l~~~~~~n~~~fh~~~g~gy~~~~~~~~~l~~~np~~a~r~~~~~~~~~~ 832 (867)
T 2gtq_A 753 SSRRSDTLQQVRTALQHPKFSLENPNKARSLIGSFSRNVPHFHAEDGSGYRFIADKVIEIDRFNPQVAARLVQAFNLCNK 832 (867)
T ss_dssp HCCSTTHHHHHHHHTTSTTCCTTCHHHHHHHHHHHHTCHHHHTCTTSHHHHHHHHHHHHHHTTCHHHHHHHGGGGTTGGG
T ss_pred cCCChHHHHHHHHHhhCcCCCcCCchHHHHHHHHHhhCccccCCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHHhhhhc
Confidence 22222 2344444444332222 44456677776643 3222233 457888999999999877666666665555
Q ss_pred chhHH
Q 046775 618 WDNVA 622 (771)
Q Consensus 618 ~~~a~ 622 (771)
++...
T Consensus 833 ~~~~~ 837 (867)
T 2gtq_A 833 LEPHR 837 (867)
T ss_dssp BCHHH
T ss_pred cCHHH
Confidence 55543
No 330
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=21.56 E-value=2.5e+02 Score=24.15 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=11.9
Q ss_pred hHHHHHHHhcCCHHHHHHHHHhcC
Q 046775 337 NSLIDAYGKCGHVEDAVKIFKESS 360 (771)
Q Consensus 337 ~~Li~~y~k~g~~~~A~~~f~~~~ 360 (771)
+.++.-|...|+.++|.+.++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 344445555555555555555444
No 331
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding, metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A* 3q44_A* 3t8v_A*
Probab=21.19 E-value=2.1e+02 Score=32.83 Aligned_cols=122 Identities=9% Similarity=-0.024 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHhHHHHHHH
Q 046775 499 NHITLVSVLCACNHAGLVAEAKHHFESMEKKFGIQPM-QEHYACMIDILGRAGKFQEAMELVDTMPFQA-NASVWGALLG 576 (771)
Q Consensus 499 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p-~~~~~~~ll~ 576 (771)
|..--.+.|+++.+...-++++.-|.. ++.-.|- .+-|-.+...-.+.+-++...++.+.-.+.+ |+--.++|++
T Consensus 730 nmtd~~~al~~~~~~~~~~~~l~~f~~---~~~~~~lv~dkwf~~qa~~~~~~~~~~v~~l~~h~~f~~~npn~~r~l~g 806 (889)
T 3ebh_A 730 YPSNWLTSLSVSAYFDKYFELYDKTYK---LSKDDELLLQEWLKTVSRSDRKDIYEILKKLENEVLKDSKNPNDIRAVYL 806 (889)
T ss_dssp CHHHHHHHHHHGGGSTTHHHHHHHHHH---HHTTSHHHHHHHHHHHHTCCCTTHHHHHHHHHHHTTTTCCCHHHHHHHHT
T ss_pred ChhHHHHHHHHHhcChhHHHHHHHHHH---HhCCCcchhhHhHHHhhCCCCcCHHHHHHHHhcCCCCCCCCCcHHHHHHH
Confidence 444444555555554333444444433 3322332 2223333222222333555555555544544 4446788888
Q ss_pred HHH-----hcCCHHHH-HHHHHHHHhcCCCCchhHHHHHHHHHhcCCchhHHH
Q 046775 577 AAR-----IYKNVEVG-QHAAEMLFAIEPEKSSTHVLLSNIYASAGMWDNVAK 623 (771)
Q Consensus 577 a~~-----~~~~~~~a-~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 623 (771)
++. -|.....| .-+++.+++++|-||..-..|...+..-.+++...+
T Consensus 807 ~f~~n~~~fh~~~g~gy~~~~~~~~~ld~~np~~a~r~~~~~~~~~~~~~~r~ 859 (889)
T 3ebh_A 807 PFTNNLRRFHDISGKGYKLIAEVITKTDKFNPMVATQLCEPFKLWNKLDTKRQ 859 (889)
T ss_dssp GGGGCHHHHTCTTSHHHHHHHHHHHHHHTTCHHHHHHTTGGGGGGGGBCHHHH
T ss_pred HHhcChhhccCCCCcHHHHHHHHHHHHcccChHHHHHHHHHHHHHHhcCHHHH
Confidence 775 12222334 447888999999999987777777777667666543
No 332
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=20.60 E-value=4.1e+02 Score=22.82 Aligned_cols=34 Identities=6% Similarity=0.052 Sum_probs=18.1
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHHhcCCCceecHH
Q 046775 335 IVNSLIDAYGKCGHVEDAVKIFKESSAVDLVACT 368 (771)
Q Consensus 335 ~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~ 368 (771)
.|-+....+-..|++.+|.++|+.-.+.+.....
T Consensus 103 fYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 103 LYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 3455555555666666666666554444443333
No 333
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=20.54 E-value=4.6e+02 Score=23.60 Aligned_cols=44 Identities=18% Similarity=0.143 Sum_probs=33.1
Q ss_pred HHHHHH---HcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHhhccc
Q 046775 370 MITAYA---QFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLS 413 (771)
Q Consensus 370 li~~~~---~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 413 (771)
+|+++. +..+++.|+-.+-+|++.|-.|....-..++.+....|
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 455554 56889999999999999988887777666666665555
No 334
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=20.27 E-value=1.1e+02 Score=24.05 Aligned_cols=39 Identities=21% Similarity=0.240 Sum_probs=31.5
Q ss_pred CCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHH
Q 046775 448 GSIDDADRAFSEIPDRGIVSWSAMIGGLAQHGRGKEALQ 486 (771)
Q Consensus 448 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 486 (771)
.+.+.|.++++.++.++..+|..++.++...|+..-|..
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHH
Confidence 468889999999999999999999999977777655543
Done!