BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046776
(314 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 135/320 (42%), Gaps = 37/320 (11%)
Query: 4 EAAQKLPIVDLSQENLKPGSSSWQTAC-NEIRLALEEYGCFVALYDKHLP-EFRNKVFDS 61
E ++P +DL +N++ + C E++ A ++G + L + +P + +V +
Sbjct: 41 EDGPQVPTIDL--KNIESDDEKIRENCIEELKKASLDWGV-MHLINHGIPADLMERVKKA 97
Query: 62 LEELFDLPQETKMKNVNPKPAHGYMGKISAFPLHEGMGIEYATN-RGECE---------- 110
EE F L E K K N + GKI +G G + A N G+ E
Sbjct: 98 GEEFFSLSVEEKEKYANDQAT----GKI------QGYGSKLANNASGQLEWEDYFFHLAY 147
Query: 111 ---KFTSLMWPQGNYQFCEVAHTYANIVAELQQLVMKMLFESYGIE-KLYESQKESTTYL 166
K +WP+ + E YA + L V K L G+E E + L
Sbjct: 148 PEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEEL 207
Query: 167 LRFLK---YRKSQTDTTNLAFKGHTDKSLVSILHSNHVKGLELRTKDGEWIHFEPSPSSF 223
L +K Y K L + HTD S ++ + N V GL+L +G+W+ + P S
Sbjct: 208 LLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFY-EGKWVTAKCVPDSI 266
Query: 224 VIIAGDVCMAWSNDRIKSCYHRVIVDGPEVRYALGLFSFLSG---VIQTPEELVDDEHPL 280
V+ GD SN + KS HR +V+ +VR + +F V++ E+V E P
Sbjct: 267 VMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPA 326
Query: 281 QYKPFDHAGLLQFYLSNSDQ 300
++ P A ++ L +Q
Sbjct: 327 KFPPRTFAQHIEHKLFGKEQ 346
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 135/320 (42%), Gaps = 37/320 (11%)
Query: 4 EAAQKLPIVDLSQENLKPGSSSWQTAC-NEIRLALEEYGCFVALYDKHLP-EFRNKVFDS 61
E ++P +DL +N++ + C E++ A ++G + L + +P + +V +
Sbjct: 42 EDGPQVPTIDL--KNIESDDEKIRENCIEELKKASLDWGV-MHLINHGIPADLMERVKKA 98
Query: 62 LEELFDLPQETKMKNVNPKPAHGYMGKISAFPLHEGMGIEYATN-RGECE---------- 110
EE F L E K K N + GKI +G G + A N G+ E
Sbjct: 99 GEEFFSLSVEEKEKYANDQAT----GKI------QGYGSKLANNASGQLEWEDYFFHLAY 148
Query: 111 ---KFTSLMWPQGNYQFCEVAHTYANIVAELQQLVMKMLFESYGIE-KLYESQKESTTYL 166
K +WP+ + E YA + L V K L G+E E + L
Sbjct: 149 PEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEEL 208
Query: 167 LRFLK---YRKSQTDTTNLAFKGHTDKSLVSILHSNHVKGLELRTKDGEWIHFEPSPSSF 223
L +K Y K L + HTD S ++ + N V GL+L +G+W+ + P S
Sbjct: 209 LLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFY-EGKWVTAKCVPDSI 267
Query: 224 VIIAGDVCMAWSNDRIKSCYHRVIVDGPEVRYALGLFSFLSG---VIQTPEELVDDEHPL 280
V+ GD SN + KS HR +V+ +VR + +F V++ E+V E P
Sbjct: 268 VMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPA 327
Query: 281 QYKPFDHAGLLQFYLSNSDQ 300
++ P A ++ L +Q
Sbjct: 328 KFPPRTFAQHIEHKLFGKEQ 347
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 110/275 (40%), Gaps = 27/275 (9%)
Query: 30 CNEIRLALEEYGCFVALYDKHLPEFR-NKVFDSLEELFDLPQETKMKNVNPKP-AHGYMG 87
E+ + E YG F L D L + R + DS + F LP ETK + K A GY+
Sbjct: 23 AQELGASFERYG-FAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYI- 80
Query: 88 KISAFPLHEGMGIEY---------ATNRGECEKFTSL----MWPQGNYQFCEVAHTYANI 134
F + G ++ + +F + +WP F N
Sbjct: 81 ---PFGVETAKGADHYDLKEFWHXGRDLPPGHRFRAHXADNVWPAEIPAFKHDVSWLYNS 137
Query: 135 VAELQQLVMKMLFESYGIEK-LYESQKESTTYLLRFLKYRKSQTDTTNLAFKGHTDKSLV 193
+ V++ + +E+ ++ + +LR L Y D T + H D + +
Sbjct: 138 LDGXGGKVLEAIATYLKLERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDINTI 197
Query: 194 SILHSNHVKGLELRTKDGEWIHFEPSPSSFVIIAGDVCMAWSNDRIKSCYHRVIVDGPE- 252
++L GLE+ +DG+W+ P P VI GD +N+ + S HRV+ PE
Sbjct: 198 TLLLGAEEGGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHRVVNPPPER 257
Query: 253 ---VRYALGLFSFLSG--VIQTPEELVDDEHPLQY 282
RY+ F + I+T + V E+P +Y
Sbjct: 258 RGVPRYSTPFFLHFASDYEIKTLQNCVTAENPDRY 292
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 131/320 (40%), Gaps = 37/320 (11%)
Query: 4 EAAQKLPIVDLSQENLKPGSSSWQTAC-NEIRLALEEYGCFVALYDKHLP-EFRNKVFDS 61
E ++P +DL +N++ + C E++ A ++G L + +P + +V +
Sbjct: 42 EDGPQVPTIDL--KNIESDDEKIRENCIEELKKASLDWGV-XHLINHGIPADLXERVKKA 98
Query: 62 LEELFDLPQETKMKNVNPKPAHGYMGKISAFPLHEGMGIEYATN-RGECE---------- 110
EE F L E K K N + GKI +G G + A N G+ E
Sbjct: 99 GEEFFSLSVEEKEKYANDQAT----GKI------QGYGSKLANNASGQLEWEDYFFHLAY 148
Query: 111 ---KFTSLMWPQGNYQFCEVAHTYANIVAELQQLVMKMLFESYGIE-KLYESQKESTTYL 166
K +WP+ + E YA + L V K L G+E E + L
Sbjct: 149 PEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEEL 208
Query: 167 LRFLK---YRKSQTDTTNLAFKGHTDKSLVSILHSNHVKGLELRTKDGEWIHFEPSPSSF 223
L K Y K L + HTD S ++ + N V GL+L +G+W+ + P S
Sbjct: 209 LLQXKINYYPKCPQPELALGVEAHTDVSALTFILHNXVPGLQLFY-EGKWVTAKCVPDSI 267
Query: 224 VIIAGDVCMAWSNDRIKSCYHRVIVDGPEVRYALGLFSFLSG---VIQTPEELVDDEHPL 280
V GD SN + KS HR +V+ +VR + +F V++ E V E P
Sbjct: 268 VXHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEXVSVESPA 327
Query: 281 QYKPFDHAGLLQFYLSNSDQ 300
++ P A ++ L +Q
Sbjct: 328 KFPPRTFAQHIEHKLFGKEQ 347
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 65/148 (43%), Gaps = 6/148 (4%)
Query: 118 PQGNYQFCEVAHTYANIVAELQQLVMKMLFESYGIEKLYESQ----KESTTYLLRFLKYR 173
P + ++ EV +A + +L + ++ +L E+ G+EK Y + + + Y
Sbjct: 104 PDLDEEYREVXRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYP 163
Query: 174 KSQTDTTNLAFKGHTDKS-LVSILHSNHVKGLELRTKDGEWIHFEPSPSSFVIIAGDVCM 232
+ HTD ++ + + V GL+L KDG+WI P S V+ GD
Sbjct: 164 PCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQL-LKDGQWIDVPPXRHSIVVNLGDQLE 222
Query: 233 AWSNDRIKSCYHRVIVDGPEVRYALGLF 260
+N + KS HRVI R +L F
Sbjct: 223 VITNGKYKSVXHRVIAQKDGARXSLASF 250
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 6/112 (5%)
Query: 155 LYESQKESTTYLLRFLKYRKSQTDTTNLAFKG--HTDKSLVSILHSNHVKGLELRTKDGE 212
L E S LLR L Y D A + H D +L+++L + + GL+++ KDG
Sbjct: 140 LPEXIANSHKTLLRILHYPPXTGDEEXGAIRAAAHEDINLITVLPTANEPGLQVKAKDGS 199
Query: 213 WIHFEPSPSSFVIIAGDVCMAWSNDRIKSCYHRVI----VDGPEVRYALGLF 260
W+ + +I GD S+ S HRVI D + R +L LF
Sbjct: 200 WLDVPSDFGNIIINIGDXLQEASDGYFPSTSHRVINPEGTDKTKSRISLPLF 251
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 8/130 (6%)
Query: 174 KSQTDTTNLAFKGHTDKSLVSILHSNHVKGLELRTKDGEWIHFEPSPSSFVIIAGDVCMA 233
K+ D T L+F+ H D SL+++L+ ++V+ L++ T G + E + ++I G
Sbjct: 201 KTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAG-YQDIEADDTGYLINCGSYMAH 259
Query: 234 WSNDRIKSCYHRVIVDGPEVRYALGLFSFL--SGVIQ--TPEEL--VDDEHPLQYKPFDH 287
+N+ K+ HRV E R +L F L VI P E D PL Y +
Sbjct: 260 LTNNYYKAPIHRVKWVNAE-RQSLPFFVNLGYDSVIDPFDPREPNGKSDREPLSYGDYLQ 318
Query: 288 AGLLQFYLSN 297
GL+ N
Sbjct: 319 NGLVSLINKN 328
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 8/124 (6%)
Query: 174 KSQTDTTNLAFKGHTDKSLVSILHSNHVKGLELRTKDGEWIHFEPSPSSFVIIAGDVCMA 233
K+ D T L+F+ H D SL+++L+ ++V+ L++ T G + E + ++I G
Sbjct: 201 KTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAG-YQDIEADDTGYLINCGSYMAH 259
Query: 234 WSNDRIKSCYHRVIVDGPEVRYALGLFSFL--SGVIQ--TPEEL--VDDEHPLQYKPFDH 287
+N+ K+ HRV E R +L F L VI P E D PL Y +
Sbjct: 260 LTNNYYKAPIHRVKWVNAE-RQSLPFFVNLGYDSVIDPFDPREPNGKSDREPLSYGDYLQ 318
Query: 288 AGLL 291
GL+
Sbjct: 319 NGLV 322
>pdb|2YKF|A Chain A, Sensor Region Of A Sensor Histidine Kinase
pdb|2YKH|A Chain A, Sensor Region Of A Sensor Histidine Kinase
pdb|2YKH|B Chain B, Sensor Region Of A Sensor Histidine Kinase
Length = 305
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 16/70 (22%)
Query: 227 AGDVCMAWSNDRIKSCYHRVIVDGPEVRYA----------LGLFSFLSGVIQTPEELVDD 276
AGDV M+ S+ R + R+ VDG V YA +GL + L GV L+D
Sbjct: 167 AGDVAMSRSSPRAGDGFIRLDVDG-VVSYASPNALSAYHRMGLTTELEGV-----NLIDA 220
Query: 277 EHPLQYKPFD 286
PL PF+
Sbjct: 221 TRPLISDPFE 230
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,945,877
Number of Sequences: 62578
Number of extensions: 428169
Number of successful extensions: 784
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 768
Number of HSP's gapped (non-prelim): 15
length of query: 314
length of database: 14,973,337
effective HSP length: 99
effective length of query: 215
effective length of database: 8,778,115
effective search space: 1887294725
effective search space used: 1887294725
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)