BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046777
         (250 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q88CZ9|HUTI_PSEPK Imidazolonepropionase OS=Pseudomonas putida (strain KT2440) GN=hutI
           PE=3 SV=1
          Length = 401

 Score = 35.4 bits (80), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 7/66 (10%)

Query: 13  RARRAVASPSEQLAAAHVHVQP------TTISLQPSNKKDLSKSKKILRRVRSVFRSFPI 66
           RA RA AS  E  A+AH  VQ       TT+ ++     DL+  +K+LR  R +    P+
Sbjct: 103 RATRA-ASEDELFASAHQRVQALMRDGVTTLEIKSGYGLDLANERKMLRVARRLADELPL 161

Query: 67  NIPPAC 72
            +   C
Sbjct: 162 TVRATC 167


>sp|Q8K0D5|EFGM_MOUSE Elongation factor G, mitochondrial OS=Mus musculus GN=Gfm1 PE=2
           SV=1
          Length = 751

 Score = 31.6 bits (70), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 22  SEQLAAAHVHV-QPT-TISLQPSNKKDLSKSKKILRRVRSVFRSFPINIPPACKIPVPLH 79
           +  L+   +HV +P  +I+++PSNK DL K  K + R      +F ++  P  K  +   
Sbjct: 436 NSDLSMESIHVPEPVISIAMRPSNKNDLEKFSKGIGRFTREDPTFKVHFDPESKETIVSG 495

Query: 80  DGHVHLH 86
            G +HL 
Sbjct: 496 MGELHLE 502


>sp|Q24QI9|HIS1_DESHY ATP phosphoribosyltransferase OS=Desulfitobacterium hafniense
           (strain Y51) GN=hisG PE=3 SV=1
          Length = 223

 Score = 31.2 bits (69), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 22/36 (61%)

Query: 119 LELAIPTGKLLQDMGLGLVRIALECEKKPAEKTKII 154
           L +A+P GKLL D    L +I +EC++   E  K++
Sbjct: 6   LTIALPKGKLLTDSLEALTKIGIECQEVSEESRKLV 41


>sp|Q8A5K3|Y2236_BACTN UPF0102 protein BT_2236 OS=Bacteroides thetaiotaomicron (strain
          ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482)
          GN=BT_2236 PE=3 SV=1
          Length = 121

 Score = 30.8 bits (68), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 18 VASPSEQLAAAHVHVQPTTISLQPSNKKDLSKSKKILRRVRSVFRSFPINIP 69
          VA+   +L    V  +  T+  QP    DL K K+ +R   +  + F I++P
Sbjct: 41 VAAKENELVIVEVKTRSNTLFAQPEEAVDLPKIKRTVRAADAYMKLFQIDVP 92


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.136    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,716,432
Number of Sequences: 539616
Number of extensions: 4530749
Number of successful extensions: 20669
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 20584
Number of HSP's gapped (non-prelim): 82
length of query: 250
length of database: 191,569,459
effective HSP length: 115
effective length of query: 135
effective length of database: 129,513,619
effective search space: 17484338565
effective search space used: 17484338565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)