Query 046777
Match_columns 250
No_of_seqs 88 out of 102
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 04:23:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046777.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046777hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04759 DUF617: Protein of un 100.0 5.7E-97 1E-101 628.8 17.5 161 90-250 1-166 (166)
2 TIGR01570 A_thal_3588 uncharac 100.0 2.5E-95 5E-100 616.1 16.5 160 91-250 1-161 (161)
3 COG2514 Predicted ring-cleavag 75.7 1.3 2.9E-05 41.4 1.2 13 227-239 108-120 (265)
4 PF15566 Imm18: Immunity prote 41.6 3.9 8.5E-05 30.1 -1.8 34 210-244 3-36 (52)
5 PF02955 GSH-S_ATP: Prokaryoti 29.8 22 0.00048 30.8 0.6 22 161-183 89-110 (173)
6 PF12681 Glyoxalase_2: Glyoxal 25.6 37 0.0008 24.2 1.0 11 228-238 93-103 (108)
7 PF12851 Tet_JBP: Oxygenase do 25.5 37 0.0008 29.1 1.2 31 158-188 1-35 (171)
8 COG1886 FliN Flagellar motor s 23.1 63 0.0014 26.9 2.1 19 152-171 102-120 (136)
9 PF08150 FerB: FerB (NUC096) d 22.5 54 0.0012 25.7 1.5 19 153-172 5-23 (76)
10 cd07266 HPCD_N_class_II N-term 22.3 55 0.0012 24.0 1.5 12 227-238 100-111 (121)
No 1
>PF04759 DUF617: Protein of unknown function, DUF617; InterPro: IPR006460 This family of hypothetical plant proteins are defined by a region of about 170 amino acids found at the C terminus. These proteins have highly divergent N-terminal regions rich in low complexity sequence. PSI-BLAST reveals no clear similarity to any characterised protein. At least 12 distinct members are found in Arabidopsis thaliana (Mouse-ear cress).
Probab=100.00 E-value=5.7e-97 Score=628.84 Aligned_cols=161 Identities=60% Similarity=1.100 Sum_probs=152.1
Q ss_pred eeEEEEeeccCCceeEeeecCCCCCCeEEEEeccchhhHHHHhccCceeEEeeeccCCCCC-----Ccccccceeeeeec
Q 046777 90 RMTGTLFGYRKARVNIVIQENPRCLPLLVLELAIPTGKLLQDMGLGLVRIALECEKKPAEK-----TKIIDEPIWTMYCN 164 (250)
Q Consensus 90 ~vTGTlFG~RrGrV~~aiQedp~~~P~lLLELa~pT~~L~rEM~~GlvRIALEcek~~~~~-----~~Lleep~WtmyCN 164 (250)
+|||||||||||||+||||+||+|.|+||||||+||++|+|||++|+|||||||||+..++ .+||+||+|+||||
T Consensus 1 rvtGTlFG~RrGrV~~aiQ~d~~s~P~lllELa~pT~~L~~EM~~GlvRIaLEc~k~~~~~~~~~~~~Ll~ep~W~myCN 80 (166)
T PF04759_consen 1 RVTGTLFGHRRGRVSFAIQEDPRSPPILLLELAMPTSALVREMASGLVRIALECEKRKGKSKGAASGSLLEEPVWTMYCN 80 (166)
T ss_pred CcEEEEEecccceEEEEEecCCCCCCeEEEEecCcHHHHHHHhhcCeEEEEEEecCCCCCCCcccccccccceeEEEEEC
Confidence 6999999999999999999999999999999999999999999999999999999985433 36999999999999
Q ss_pred CceeeeeecccCChhhHHHHHhhhcccccceeecCCCCCCCCCCCceeeeecccceeeecCCcceeeeecCCCCCCCceE
Q 046777 165 GRKSGYGVKRKATDEDLGFMQMLHGVSMGAGVLPTATDANNDQEGDLTYMRAQFERVIGSKDSETYYMSTPDGNDGPELS 244 (250)
Q Consensus 165 GRK~GYAvRRe~t~~D~~VL~~l~~VSmGAGVLP~~~~~~~~~dgElmYMRA~FERVVGSkDSEsfyMinPdg~~GpELS 244 (250)
||||||||||+|||+||+||++|++|||||||||+.....+++|||||||||+|||||||+|||||||||||||+|||||
T Consensus 81 GrK~GyAvRRe~t~~d~~vL~~l~~VS~GAGVlP~~~~~~~~~~gel~YMRA~FERVVGS~DSEsfyminPdg~~GpELS 160 (166)
T PF04759_consen 81 GRKVGYAVRREPTDDDLHVLELLRSVSMGAGVLPGGGGGSGGGDGELMYMRARFERVVGSRDSESFYMINPDGNGGPELS 160 (166)
T ss_pred CceeeeeEEcCCCHHHHHHHHhhheeeecceeccCccccCCCCCceEeeeeeeeeeeeccCCcceeEEECCCCCCCceEE
Confidence 99999999999999999999999999999999999433344579999999999999999999999999999999999999
Q ss_pred EEEEeC
Q 046777 245 IFFVRV 250 (250)
Q Consensus 245 IFflRv 250 (250)
|||+||
T Consensus 161 IFf~Rv 166 (166)
T PF04759_consen 161 IFFLRV 166 (166)
T ss_pred EEEEeC
Confidence 999997
No 2
>TIGR01570 A_thal_3588 uncharacterized plant-specific domain TIGR01570. This model represents a region of about 170 amino acids found at the C-terminus of a family of plant proteins. These proteins typically have additional highly divergent N-terminal regions rich in low complexity sequence. PSI-BLAST reveals no clear similarity to any characterized protein. At least 12 distinct members are found in Arabidopsis thaliana.
Probab=100.00 E-value=2.5e-95 Score=616.14 Aligned_cols=160 Identities=59% Similarity=1.032 Sum_probs=150.6
Q ss_pred eEEEEeeccCCceeEeeecCCCCCCeEEEEeccchhhHHHHhccCceeEEeeeccCCC-CCCcccccceeeeeecCceee
Q 046777 91 MTGTLFGYRKARVNIVIQENPRCLPLLVLELAIPTGKLLQDMGLGLVRIALECEKKPA-EKTKIIDEPIWTMYCNGRKSG 169 (250)
Q Consensus 91 vTGTlFG~RrGrV~~aiQedp~~~P~lLLELa~pT~~L~rEM~~GlvRIALEcek~~~-~~~~Lleep~WtmyCNGRK~G 169 (250)
|||||||||||||+||||+||+|.|+||||||+||++|+|||++|+|||||||||++. ++.+||+||+|+|||||||||
T Consensus 1 vtGTlfG~RrgrV~~~iQ~dp~~~P~lllELa~pt~~L~~Em~~G~vRIaLEc~k~~~~~~~~ll~ep~W~myCNGrk~G 80 (161)
T TIGR01570 1 VTGTIFGYRKGRVNFCIQEDRRSLPILLLELAMPTSVLQKEMSSGLVRIALECETRKQDKDSKLLSEPVWTMYCNGRKVG 80 (161)
T ss_pred CeEEEecCCCCcceeeecCCCCCCCeeeeeecCcHHHHHHHhhcCceeEEeeeeccccCCCccceeeeeEEEEECCceee
Confidence 7999999999999999999999999999999999999999999999999999999853 567899999999999999999
Q ss_pred eeecccCChhhHHHHHhhhcccccceeecCCCCCCCCCCCceeeeecccceeeecCCcceeeeecCCCCCCCceEEEEEe
Q 046777 170 YGVKRKATDEDLGFMQMLHGVSMGAGVLPTATDANNDQEGDLTYMRAQFERVIGSKDSETYYMSTPDGNDGPELSIFFVR 249 (250)
Q Consensus 170 YAvRRe~t~~D~~VL~~l~~VSmGAGVLP~~~~~~~~~dgElmYMRA~FERVVGSkDSEsfyMinPdg~~GpELSIFflR 249 (250)
|||||+|||+||+||++|++|||||||||+..+.++.++||||||||+|||||||||||||||||||||+||||||||+|
T Consensus 81 yAvRR~~t~~d~~vL~~l~~VS~GAGVlP~~~~~~~~~~gel~YMRA~FERVVGS~DSEsfyminPdg~~gpELSIF~lR 160 (161)
T TIGR01570 81 YAVKRSASEEDMTVLTALSKVSVGAGVLPCGKELGGFDEDELMYMRASFERVVGSKDSESFYMINPEGNIGQELSIFFLR 160 (161)
T ss_pred EeEecCCCHHHHHHHHhhheeeecceeccCCCCCCCCCCceEEEEeeeeeEeccccCceeEEeECCCCCCCceEEEEEEe
Confidence 99999999999999999999999999999654332323499999999999999999999999999999999999999999
Q ss_pred C
Q 046777 250 V 250 (250)
Q Consensus 250 v 250 (250)
+
T Consensus 161 ~ 161 (161)
T TIGR01570 161 S 161 (161)
T ss_pred C
Confidence 6
No 3
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=75.73 E-value=1.3 Score=41.38 Aligned_cols=13 Identities=46% Similarity=0.974 Sum_probs=12.2
Q ss_pred cceeeeecCCCCC
Q 046777 227 SETYYMSTPDGND 239 (250)
Q Consensus 227 SEsfyMinPdg~~ 239 (250)
|||+|+-||+||+
T Consensus 108 SEAlYl~DPEGNG 120 (265)
T COG2514 108 SEALYLEDPEGNG 120 (265)
T ss_pred heeeeecCCCCCe
Confidence 9999999999975
No 4
>PF15566 Imm18: Immunity protein 18
Probab=41.61 E-value=3.9 Score=30.08 Aligned_cols=34 Identities=29% Similarity=0.390 Sum_probs=28.2
Q ss_pred ceeeeecccceeeecCCcceeeeecCCCCCCCceE
Q 046777 210 DLTYMRAQFERVIGSKDSETYYMSTPDGNDGPELS 244 (250)
Q Consensus 210 ElmYMRA~FERVVGSkDSEsfyMinPdg~~GpELS 244 (250)
+|-|+...-++..++.+.+--|+|.|| ++|-|||
T Consensus 3 gL~~L~~~l~~L~~~~~~~H~Hlmtp~-WgG~ELs 36 (52)
T PF15566_consen 3 GLELLQDQLENLQEKEPFDHEHLMTPD-WGGEELS 36 (52)
T ss_pred hHHHHHHHHHHHHhccCCCCceecccc-ccccccc
Confidence 477888888889999888888999995 6778886
No 5
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=29.78 E-value=22 Score=30.77 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=13.7
Q ss_pred eeecCceeeeeecccCChhhHHH
Q 046777 161 MYCNGRKSGYGVKRKATDEDLGF 183 (250)
Q Consensus 161 myCNGRK~GYAvRRe~t~~D~~V 183 (250)
+++||+=+| |++|.+.+.|+++
T Consensus 89 i~~nG~~~~-av~R~P~~gd~R~ 110 (173)
T PF02955_consen 89 ILFNGEPSH-AVRRIPAKGDFRS 110 (173)
T ss_dssp EEETTEE-S-EEEEE--SS-S--
T ss_pred EEECCEEhH-HeecCCCCCCcee
Confidence 578999888 9999888888765
No 6
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=25.60 E-value=37 Score=24.18 Aligned_cols=11 Identities=45% Similarity=1.129 Sum_probs=7.9
Q ss_pred ceeeeecCCCC
Q 046777 228 ETYYMSTPDGN 238 (250)
Q Consensus 228 EsfyMinPdg~ 238 (250)
-.||++||||+
T Consensus 93 ~~~~~~DPdG~ 103 (108)
T PF12681_consen 93 RSFYFIDPDGN 103 (108)
T ss_dssp EEEEEE-TTS-
T ss_pred EEEEEECCCCC
Confidence 58999999986
No 7
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=25.53 E-value=37 Score=29.07 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=17.8
Q ss_pred eeeeeecCceeee---eeccc-CChhhHHHHHhhh
Q 046777 158 IWTMYCNGRKSGY---GVKRK-ATDEDLGFMQMLH 188 (250)
Q Consensus 158 ~WtmyCNGRK~GY---AvRRe-~t~~D~~VL~~l~ 188 (250)
.|.||-||.|.+= +.|+- .+.++..+.+.|+
T Consensus 1 ~~~~y~~~~~~~r~~~~~rk~~~~~~~~~~~~~l~ 35 (171)
T PF12851_consen 1 SWSMYFNGCKFPRGSKKPRKFRLTPENPKLEENLQ 35 (171)
T ss_pred CeeEEeCCCCccccccccceeecccccccHHHHHH
Confidence 3999999988764 22222 3444444444444
No 8
>COG1886 FliN Flagellar motor switch/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=23.10 E-value=63 Score=26.92 Aligned_cols=19 Identities=42% Similarity=0.639 Sum_probs=15.9
Q ss_pred cccccceeeeeecCceeeee
Q 046777 152 KIIDEPIWTMYCNGRKSGYG 171 (250)
Q Consensus 152 ~Lleep~WtmyCNGRK~GYA 171 (250)
++..+|+|- ++|||++||+
T Consensus 102 ~~~~~~VdI-~vNg~~Ig~G 120 (136)
T COG1886 102 KLAGEPVDI-LVNGRLIGRG 120 (136)
T ss_pred CcCCCceEE-EECCEEEEEE
Confidence 467788886 6999999996
No 9
>PF08150 FerB: FerB (NUC096) domain; InterPro: IPR012561 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This is central domain B in proteins of the Ferlin family [].; GO: 0016021 integral to membrane
Probab=22.46 E-value=54 Score=25.68 Aligned_cols=19 Identities=32% Similarity=0.615 Sum_probs=15.1
Q ss_pred ccccceeeeeecCceeeeee
Q 046777 153 IIDEPIWTMYCNGRKSGYGV 172 (250)
Q Consensus 153 Lleep~WtmyCNGRK~GYAv 172 (250)
|=|.-+| |.||+|++.||-
T Consensus 5 iPDV~IW-Ml~g~kRvAYaR 23 (76)
T PF08150_consen 5 IPDVFIW-MLSGNKRVAYAR 23 (76)
T ss_pred CCcEEEE-EEeCCeEEEEEE
Confidence 4456677 889999999993
No 10
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=22.31 E-value=55 Score=24.05 Aligned_cols=12 Identities=17% Similarity=0.238 Sum_probs=10.0
Q ss_pred cceeeeecCCCC
Q 046777 227 SETYYMSTPDGN 238 (250)
Q Consensus 227 SEsfyMinPdg~ 238 (250)
..+||+.||||+
T Consensus 100 ~~~~~~~DPdG~ 111 (121)
T cd07266 100 GRALRVEDPLGF 111 (121)
T ss_pred ccEEEEECCCCC
Confidence 357999999986
Done!