Query 046777
Match_columns 250
No_of_seqs 88 out of 102
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 07:07:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046777.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046777hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kd2_A FAS apoptotic inhibitor 35.4 16 0.00053 28.6 1.7 20 136-168 23-42 (94)
2 2l6o_A Uncharacterized protein 34.0 21 0.00071 28.5 2.2 26 192-217 1-31 (114)
3 4gym_A Glyoxalase/bleomycin re 19.5 41 0.0014 24.5 1.4 10 229-238 117-126 (149)
4 3rri_A Glyoxalase/bleomycin re 14.8 63 0.0021 22.7 1.4 10 229-238 112-121 (135)
5 3sk2_A EHPR; antibiotic resist 13.6 70 0.0024 22.7 1.4 11 228-238 114-124 (132)
6 2xbz_A RETS-hybrid sensor kina 12.9 1.2E+02 0.0041 24.0 2.6 30 95-125 67-96 (171)
7 3jyb_A Sensor protein; beta ba 12.8 1.7E+02 0.006 22.1 3.5 29 95-124 41-69 (145)
8 3ey7_A Biphenyl-2,3-DIOL 1,2-d 12.6 80 0.0027 21.6 1.4 11 228-238 113-123 (133)
9 2p25_A Glyoxalase family prote 12.1 85 0.0029 21.2 1.4 11 228-238 110-120 (126)
10 1xqa_A Glyoxalase/bleomycin re 12.0 61 0.0021 22.0 0.6 12 227-238 96-107 (113)
No 1
>2kd2_A FAS apoptotic inhibitory molecule 1; protein, beta sandwich, apoptosis; NMR {Mus musculus} PDB: 2kw1_A
Probab=35.39 E-value=16 Score=28.61 Aligned_cols=20 Identities=35% Similarity=0.713 Sum_probs=13.7
Q ss_pred ceeEEeeeccCCCCCCcccccceeeeeecCcee
Q 046777 136 LVRIALECEKKPAEKTKIIDEPIWTMYCNGRKS 168 (250)
Q Consensus 136 lvRIALEcek~~~~~~~Lleep~WtmyCNGRK~ 168 (250)
--||+||-+.- ..||||+|+
T Consensus 23 ~~RIvLeK~tm-------------dVwvNG~~i 42 (94)
T 2kd2_A 23 DLRVVLEKDTM-------------DVWCNGQKM 42 (94)
T ss_dssp EEEEEEETTTT-------------EEEESSSBC
T ss_pred EEEEEEecCcE-------------EEEECCEEe
Confidence 57888883321 367999986
No 2
>2l6o_A Uncharacterized protein YP_926445.1; structural genomics, PSI-biology, protein structure initiati center for structural genomics, JCSG; NMR {Shewanella amazonensis}
Probab=33.99 E-value=21 Score=28.51 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=18.7
Q ss_pred ccceeecCCCCCC-----CCCCCceeeeecc
Q 046777 192 MGAGVLPTATDAN-----NDQEGDLTYMRAQ 217 (250)
Q Consensus 192 mGAGVLP~~~~~~-----~~~dgElmYMRA~ 217 (250)
||||-.|...-.+ -.+|+||+|+.-.
T Consensus 1 ~~~~~~~~~mi~WPailkl~gddELiYL~s~ 31 (114)
T 2l6o_A 1 MGAGQTPHPQLIWPALLKQQGCNELLPLRTN 31 (114)
T ss_dssp CCSSSCSCSSCCSSEEECCSSCCCCEEESSH
T ss_pred CCCCcccCcCccCCEEEecCCCceeEeecCH
Confidence 7999888664332 2468899999854
No 3
>4gym_A Glyoxalase/bleomycin resistance protein/dioxygena; PSI-biology, midwest center for structural genomics, MCSG, oxidoreductase; HET: MSE; 1.56A {Conexibacter woesei}
Probab=19.48 E-value=41 Score=24.50 Aligned_cols=10 Identities=20% Similarity=0.228 Sum_probs=8.9
Q ss_pred eeeeecCCCC
Q 046777 229 TYYMSTPDGN 238 (250)
Q Consensus 229 sfyMinPdg~ 238 (250)
++|.-|||||
T Consensus 117 ~~~f~DPDGn 126 (149)
T 4gym_A 117 GRSFHDLDGH 126 (149)
T ss_dssp EEEEECTTCC
T ss_pred EEEEEcCCCC
Confidence 5899999997
No 4
>3rri_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=14.78 E-value=63 Score=22.70 Aligned_cols=10 Identities=30% Similarity=0.866 Sum_probs=9.1
Q ss_pred eeeeecCCCC
Q 046777 229 TYYMSTPDGN 238 (250)
Q Consensus 229 sfyMinPdg~ 238 (250)
+||+.|||||
T Consensus 112 ~~~~~DPdGn 121 (135)
T 3rri_A 112 TFFLIDPSNN 121 (135)
T ss_dssp EEEEECTTCC
T ss_pred EEEEECCCCC
Confidence 7899999997
No 5
>3sk2_A EHPR; antibiotic resistance, griseoluteate-binding protein; HET: GRI; 1.01A {Pantoea agglomerans} PDB: 3sk1_A*
Probab=13.64 E-value=70 Score=22.69 Aligned_cols=11 Identities=45% Similarity=0.993 Sum_probs=9.4
Q ss_pred ceeeeecCCCC
Q 046777 228 ETYYMSTPDGN 238 (250)
Q Consensus 228 EsfyMinPdg~ 238 (250)
..||+.|||||
T Consensus 114 ~~~~~~DPdGn 124 (132)
T 3sk2_A 114 RTFLISDPDGH 124 (132)
T ss_dssp EEEEEECTTCC
T ss_pred EEEEEECCCCC
Confidence 46899999987
No 6
>2xbz_A RETS-hybrid sensor kinase; phosphoprotein, biofilm, transferase; 2.65A {Pseudomonas aeruginosa}
Probab=12.91 E-value=1.2e+02 Score=24.01 Aligned_cols=30 Identities=17% Similarity=0.093 Sum_probs=22.5
Q ss_pred EeeccCCceeEeeecCCCCCCeEEEEeccch
Q 046777 95 LFGYRKARVNIVIQENPRCLPLLVLELAIPT 125 (250)
Q Consensus 95 lFG~RrGrV~~aiQedp~~~P~lLLELa~pT 125 (250)
-||+.++-+||.+.-..... .++||+.-|.
T Consensus 67 n~G~s~s~~Wlr~~L~n~~~-~~~L~i~~p~ 96 (171)
T 2xbz_A 67 IFPASPQAVWLQVQLPAQKV-PSWLWIFAPR 96 (171)
T ss_dssp EECSEEEEEEEEEEECCCSS-CEEEEEECTT
T ss_pred ccCCCCCCEEEEEEEEcCCC-ceEEEECCCC
Confidence 48999999999998543333 6778888754
No 7
>3jyb_A Sensor protein; beta barrel, carbohydrate binding domain, signaling kinase, component system, RETS, kinase, phosphoprotein, transferase; 2.04A {Pseudomonas aeruginosa}
Probab=12.82 E-value=1.7e+02 Score=22.06 Aligned_cols=29 Identities=17% Similarity=0.011 Sum_probs=21.5
Q ss_pred EeeccCCceeEeeecCCCCCCeEEEEeccc
Q 046777 95 LFGYRKARVNIVIQENPRCLPLLVLELAIP 124 (250)
Q Consensus 95 lFG~RrGrV~~aiQedp~~~P~lLLELa~p 124 (250)
=||+.++-+||.++-. ...-..+||+.-|
T Consensus 41 n~G~t~~~~Wlr~~l~-~~~~~~~L~i~~p 69 (145)
T 3jyb_A 41 IFPASPQAVWLQVQLP-AQKVPSWLWIFAP 69 (145)
T ss_dssp EECSCSCEEEEEEEEC-CCSSCEEEEEECT
T ss_pred ccCCCCCCEEEEEEEc-CCCcceEEEECCC
Confidence 3799999999999876 3334567777764
No 8
>3ey7_A Biphenyl-2,3-DIOL 1,2-dioxygenase III-related protein; integron cassette protein mobIle metagenome structural genomics, oxidoreductase, PSI-2; HET: MSE; 1.60A {Vibrio cholerae} PDB: 3ey8_A*
Probab=12.57 E-value=80 Score=21.64 Aligned_cols=11 Identities=45% Similarity=1.162 Sum_probs=9.4
Q ss_pred ceeeeecCCCC
Q 046777 228 ETYYMSTPDGN 238 (250)
Q Consensus 228 EsfyMinPdg~ 238 (250)
..||+.|||||
T Consensus 113 ~~~~~~DPdG~ 123 (133)
T 3ey7_A 113 TSFYFRDPDGN 123 (133)
T ss_dssp EEEEEECTTCC
T ss_pred EEEEEECCCCC
Confidence 56899999987
No 9
>2p25_A Glyoxalase family protein; structural genomics, MCSG, PSI-2, protein struct initiative, midwest center for structural genomics, oxidore; 1.70A {Enterococcus faecalis}
Probab=12.09 E-value=85 Score=21.19 Aligned_cols=11 Identities=27% Similarity=0.561 Sum_probs=8.9
Q ss_pred ceeeeecCCCC
Q 046777 228 ETYYMSTPDGN 238 (250)
Q Consensus 228 EsfyMinPdg~ 238 (250)
-.+|+.||||+
T Consensus 110 ~~~~~~DPdG~ 120 (126)
T 2p25_A 110 KMTFFFDPDGL 120 (126)
T ss_dssp EEEEEECTTCC
T ss_pred EEEEEECCCCC
Confidence 46789999986
No 10
>1xqa_A Glyoxalase/bleomycin resistance protein; dioxygenase, structural GEN midwest center for structural genomics, MCSG; HET: P6G; 1.80A {Bacillus cereus atcc 14579} SCOP: d.32.1.2
Probab=12.04 E-value=61 Score=22.01 Aligned_cols=12 Identities=33% Similarity=0.761 Sum_probs=9.8
Q ss_pred cceeeeecCCCC
Q 046777 227 SETYYMSTPDGN 238 (250)
Q Consensus 227 SEsfyMinPdg~ 238 (250)
...+|+.|||||
T Consensus 96 ~~~~~~~DPdG~ 107 (113)
T 1xqa_A 96 AYTFYVEAPGGF 107 (113)
T ss_dssp CEEEEEEETTTE
T ss_pred cEEEEEECCCCc
Confidence 357899999986
Done!