BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046778
(147 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 62.8 bits (151), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 39/63 (61%)
Query: 5 LDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSALCGSM 64
LDLS NKL GRIP ++ L L+ ++S NNLSGPIP+ QF TF + N LCG
Sbjct: 685 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP 744
Query: 65 IKR 67
+ R
Sbjct: 745 LPR 747
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 5 LDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDK 43
LD+S N LSG IP ++ + +L N+ +N++SG IPD+
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 675
Score = 33.5 bits (75), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIP 41
++ L L N +G+IPP L+ + L + ++S+N LSG IP
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435
Score = 30.8 bits (68), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIP 41
++ LD+S NKLSG ++ L N+S N GPIP
Sbjct: 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 264
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 5 LDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIP 41
+ LS N+L+G IP + L L+ +S N+ SG IP
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 22/40 (55%)
Query: 4 SLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDK 43
SL LS N LSG IP L L+ L + + N L G IP +
Sbjct: 422 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIP 41
+E+L L N L+G IP L+ L+ ++S N L+G IP
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507
Score = 26.2 bits (56), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIP 41
+ L L N L G IP +L + L + +N+L+G IP
Sbjct: 444 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 483
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 62.8 bits (151), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 39/63 (61%)
Query: 5 LDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSALCGSM 64
LDLS NKL GRIP ++ L L+ ++S NNLSGPIP+ QF TF + N LCG
Sbjct: 682 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP 741
Query: 65 IKR 67
+ R
Sbjct: 742 LPR 744
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 5 LDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDK 43
LD+S N LSG IP ++ + +L N+ +N++SG IPD+
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 672
Score = 33.5 bits (75), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIP 41
++ L L N +G+IPP L+ + L + ++S+N LSG IP
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 432
Score = 30.8 bits (68), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIP 41
++ LD+S NKLSG ++ L N+S N GPIP
Sbjct: 222 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 261
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 5 LDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIP 41
+ LS N+L+G IP + L L+ +S N+ SG IP
Sbjct: 492 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 528
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 22/40 (55%)
Query: 4 SLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDK 43
SL LS N LSG IP L L+ L + + N L G IP +
Sbjct: 419 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 458
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIP 41
+E+L L N L+G IP L+ L+ ++S N L+G IP
Sbjct: 465 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 504
Score = 26.2 bits (56), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIP 41
+ L L N L G IP +L + L + +N+L+G IP
Sbjct: 441 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 480
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 36/62 (58%)
Query: 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSALC 61
+ LDL N++ G +P LT+L FL + NVS+NNL G IP FD +Y N LC
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305
Query: 62 GS 63
GS
Sbjct: 306 GS 307
Score = 33.1 bits (74), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42
+ +LD S N LSG +PP ++ L L N +SG IPD
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSG 38
+ S+ +SRN+L+G+IPP LN L+ ++S N L G
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG 211
Score = 30.8 bits (68), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 10 NKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42
N L G IPP + +L L +++ N+SG IPD
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD 119
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 7 LSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIP 41
++ +SG IP L+++ L + SYN LSG +P
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP 142
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 29.6 bits (65), Expect = 0.72, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42
I+ LDL NK+ IP Q+ +L L NV+ N L +PD
Sbjct: 423 IKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKS-VPD 461
>pdb|2PGG|A Chain A, Crystal Structure Of A Birnavirus (Ibdv) Rna-Dependent Rna
Polymerase Vp1
Length = 774
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 32 SYNNLSGPIPDKEQFATFDDR---SYKGNSALCGSMIKRKCSSALAPPATPTGGGEDEGD 88
+N + P PD E+F + +D+ ++K ++ K + LA P +GG E E
Sbjct: 473 QWNLMRQPRPDSEEFKSIEDKLGINFKIERSIDDIRGKLRQLVLLAQPGYLSGGVEPEQS 532
Query: 89 S-VIDMVALRWSFGASYVSVILGLFAAL 115
S +++ L WS A+Y S LG++ +
Sbjct: 533 SPTVELDLLGWS--ATY-SKDLGIYVPV 557
>pdb|2PUS|A Chain A, Unprecedented Activation Mechanism Of A Non-Canonical
Rna-Dependent Rna Polymerase
pdb|2QJ1|A Chain A, Crystal Structure Of Infectious Bursal Disease Virus Vp1
Polymerase Incubated With An Oligopeptide Mimicking The
Vp3 C-Terminus
pdb|2R70|A Chain A, Crystal Structure Of Infectious Bursal Disease Virus Vp1
Polymerase, Cocrystallized With An Oligopeptide
Mimicking The Vp3 C-Terminus.
pdb|2R72|A Chain A, Crystal Structure Of Infectious Bursal Disease Virus Vp1
Polymerase, Incubated With Mg2+ Ion
Length = 852
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 32 SYNNLSGPIPDKEQFATFDDR---SYKGNSALCGSMIKRKCSSALAPPATPTGGGEDEGD 88
+N + P PD E+F + +D+ ++K ++ K + LA P +GG E E
Sbjct: 510 QWNLMRQPRPDSEEFKSIEDKLGINFKIERSIDDIRGKLRQLVLLAQPGYLSGGVEPEQS 569
Query: 89 S-VIDMVALRWSFGASYVSVILGLFAAL 115
S +++ L WS A+Y S LG++ +
Sbjct: 570 SPTVELDLLGWS--ATY-SKDLGIYVPV 594
>pdb|2BBJ|A Chain A, Crystal Structure Of The Cora Mg2+ Transporter
pdb|2BBJ|B Chain B, Crystal Structure Of The Cora Mg2+ Transporter
pdb|2BBJ|D Chain D, Crystal Structure Of The Cora Mg2+ Transporter
pdb|2BBJ|E Chain E, Crystal Structure Of The Cora Mg2+ Transporter
pdb|2BBJ|F Chain F, Crystal Structure Of The Cora Mg2+ Transporter
pdb|2HN2|A Chain A, Crystal Structure Of The Cora Mg2+ Transporter Homologue
From T. Maritima In Complex With Divalent Cations
pdb|2HN2|B Chain B, Crystal Structure Of The Cora Mg2+ Transporter Homologue
From T. Maritima In Complex With Divalent Cations
pdb|2HN2|C Chain C, Crystal Structure Of The Cora Mg2+ Transporter Homologue
From T. Maritima In Complex With Divalent Cations
pdb|2HN2|D Chain D, Crystal Structure Of The Cora Mg2+ Transporter Homologue
From T. Maritima In Complex With Divalent Cations
pdb|2HN2|E Chain E, Crystal Structure Of The Cora Mg2+ Transporter Homologue
From T. Maritima In Complex With Divalent Cations
Length = 354
Score = 25.8 bits (55), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 93 MVALRWSFGASYVSVILGLFAALWINSYWRRLWF 126
M LRW +G V ++G+ A + + + ++ W
Sbjct: 321 MPELRWKWGYPVVLAVMGVIAVIMVVYFKKKKWL 354
>pdb|2IUB|A Chain A, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|B Chain B, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|C Chain C, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|D Chain D, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|E Chain E, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|F Chain F, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|G Chain G, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|H Chain H, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|I Chain I, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|J Chain J, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution
Length = 363
Score = 25.8 bits (55), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 93 MVALRWSFGASYVSVILGLFAALWINSYWRRLWF 126
M LRW +G V ++G+ A + + + ++ W
Sbjct: 330 MPELRWKWGYPVVLAVMGVIAVIMVVYFKKKKWL 363
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.455
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,704,924
Number of Sequences: 62578
Number of extensions: 184010
Number of successful extensions: 334
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 294
Number of HSP's gapped (non-prelim): 44
length of query: 147
length of database: 14,973,337
effective HSP length: 90
effective length of query: 57
effective length of database: 9,341,317
effective search space: 532455069
effective search space used: 532455069
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)