Query 046778
Match_columns 147
No_of_seqs 177 out of 2145
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 04:23:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046778.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046778hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03150 hypothetical protein; 99.5 4.5E-14 9.8E-19 118.3 7.2 70 1-70 467-538 (623)
2 PLN00113 leucine-rich repeat r 99.3 2E-12 4.3E-17 112.7 7.1 64 1-64 548-611 (968)
3 PLN03150 hypothetical protein; 99.0 3.9E-10 8.5E-15 94.8 6.3 60 1-60 443-503 (623)
4 PLN00113 leucine-rich repeat r 99.0 2.4E-09 5.2E-14 93.6 8.1 62 1-62 524-586 (968)
5 PF12799 LRR_4: Leucine Rich r 98.5 7.5E-08 1.6E-12 53.5 2.9 36 1-37 2-37 (44)
6 PF13855 LRR_8: Leucine rich r 98.4 1.6E-07 3.6E-12 55.5 2.3 58 1-58 2-60 (61)
7 PF13855 LRR_8: Leucine rich r 97.9 9.9E-06 2.1E-10 47.7 2.3 36 1-36 26-61 (61)
8 PF00560 LRR_1: Leucine Rich R 97.9 6.4E-06 1.4E-10 38.8 1.1 22 1-23 1-22 (22)
9 PRK15387 E3 ubiquitin-protein 97.0 0.00019 4E-09 62.1 0.5 38 5-43 427-464 (788)
10 PLN03210 Resistant to P. syrin 96.9 0.0013 2.8E-08 59.4 4.6 59 1-59 779-837 (1153)
11 KOG0472 Leucine-rich repeat pr 96.7 0.0012 2.5E-08 53.2 2.3 57 1-59 253-309 (565)
12 PF14580 LRR_9: Leucine-rich r 96.6 0.002 4.4E-08 46.1 3.2 35 2-38 44-78 (175)
13 KOG0472 Leucine-rich repeat pr 96.6 0.00091 2E-08 53.7 1.1 39 2-43 507-545 (565)
14 PRK15387 E3 ubiquitin-protein 96.5 0.0016 3.4E-08 56.5 2.1 33 25-58 423-456 (788)
15 KOG4237 Extracellular matrix p 96.3 0.0026 5.7E-08 51.0 2.3 64 1-64 275-363 (498)
16 PLN03210 Resistant to P. syrin 96.3 0.0067 1.5E-07 54.9 5.0 57 2-58 659-715 (1153)
17 PF00560 LRR_1: Leucine Rich R 96.2 0.0012 2.5E-08 30.9 0.1 18 25-43 1-18 (22)
18 KOG0444 Cytoskeletal regulator 96.2 0.0021 4.5E-08 54.6 1.5 34 2-36 105-138 (1255)
19 PF14580 LRR_9: Leucine-rich r 96.1 0.0037 7.9E-08 44.8 2.0 58 1-59 65-125 (175)
20 KOG4579 Leucine-rich repeat (L 96.0 0.0007 1.5E-08 47.0 -2.0 38 3-41 80-117 (177)
21 PRK15370 E3 ubiquitin-protein 95.7 0.014 3E-07 50.7 4.1 13 25-37 263-275 (754)
22 PRK15370 E3 ubiquitin-protein 95.4 0.015 3.3E-07 50.5 3.4 33 2-37 348-380 (754)
23 KOG0617 Ras suppressor protein 95.4 0.0048 1E-07 44.6 0.3 33 3-36 59-91 (264)
24 PF12799 LRR_4: Leucine Rich r 95.3 0.011 2.3E-07 32.6 1.3 34 24-58 1-35 (44)
25 KOG1259 Nischarin, modulator o 95.2 0.0077 1.7E-07 47.1 0.9 36 2-39 309-344 (490)
26 KOG1859 Leucine-rich repeat pr 95.2 0.0024 5.2E-08 54.8 -2.0 62 1-63 210-295 (1096)
27 cd00116 LRR_RI Leucine-rich re 95.1 0.01 2.2E-07 45.3 1.3 38 1-38 138-179 (319)
28 KOG0444 Cytoskeletal regulator 95.0 0.0071 1.5E-07 51.5 0.2 56 2-58 128-184 (1255)
29 cd00116 LRR_RI Leucine-rich re 94.8 0.012 2.6E-07 44.9 1.1 38 2-39 110-152 (319)
30 KOG4194 Membrane glycoprotein 94.7 0.0091 2E-07 50.3 0.1 40 2-41 295-334 (873)
31 KOG4658 Apoptotic ATPase [Sign 94.5 0.021 4.6E-07 50.4 2.0 53 2-55 573-626 (889)
32 KOG4194 Membrane glycoprotein 94.3 0.017 3.7E-07 48.7 0.9 57 1-57 270-327 (873)
33 PF13504 LRR_7: Leucine rich r 93.8 0.045 9.7E-07 23.8 1.3 13 25-37 2-14 (17)
34 PF13516 LRR_6: Leucine Rich r 93.6 0.021 4.6E-07 26.9 0.1 21 1-21 3-23 (24)
35 KOG1859 Leucine-rich repeat pr 93.5 0.023 5E-07 49.1 0.3 35 2-38 189-223 (1096)
36 KOG0618 Serine/threonine phosp 93.3 0.016 3.5E-07 50.9 -1.1 59 2-62 385-445 (1081)
37 KOG0618 Serine/threonine phosp 93.1 0.036 7.8E-07 48.8 0.8 41 1-43 242-282 (1081)
38 KOG4237 Extracellular matrix p 93.1 0.038 8.2E-07 44.5 0.8 55 3-57 70-125 (498)
39 KOG0617 Ras suppressor protein 93.0 0.012 2.5E-07 42.6 -2.0 42 1-43 80-122 (264)
40 COG4886 Leucine-rich repeat (L 92.5 0.05 1.1E-06 43.2 0.8 36 2-38 142-177 (394)
41 KOG2739 Leucine-rich acidic nu 91.6 0.1 2.2E-06 39.6 1.5 38 1-38 66-105 (260)
42 smart00370 LRR Leucine-rich re 91.2 0.18 3.8E-06 24.0 1.7 17 23-39 1-17 (26)
43 smart00369 LRR_TYP Leucine-ric 91.2 0.18 3.8E-06 24.0 1.7 17 23-39 1-17 (26)
44 KOG0531 Protein phosphatase 1, 91.2 0.14 2.9E-06 41.3 1.9 56 1-58 96-151 (414)
45 KOG0532 Leucine-rich repeat (L 91.0 0.16 3.5E-06 42.8 2.3 37 2-39 213-249 (722)
46 PF04478 Mid2: Mid2 like cell 89.1 0.12 2.6E-06 36.1 0.1 8 97-104 51-58 (154)
47 KOG2982 Uncharacterized conser 89.0 0.18 3.9E-06 39.5 0.9 41 2-42 73-115 (418)
48 PF08693 SKG6: Transmembrane a 88.8 0.12 2.5E-06 27.8 -0.1 14 100-113 15-28 (40)
49 PF00558 Vpu: Vpu protein; In 88.6 0.45 9.8E-06 29.7 2.4 33 104-136 14-46 (81)
50 KOG4579 Leucine-rich repeat (L 88.5 0.11 2.4E-06 36.3 -0.4 54 2-57 55-110 (177)
51 smart00368 LRR_RI Leucine rich 88.2 0.37 8E-06 23.6 1.5 12 2-13 4-15 (28)
52 COG4886 Leucine-rich repeat (L 87.7 0.46 9.9E-06 37.7 2.5 40 2-43 257-296 (394)
53 KOG1259 Nischarin, modulator o 87.2 0.25 5.4E-06 38.9 0.7 35 2-37 286-320 (490)
54 KOG1644 U2-associated snRNP A' 86.5 0.84 1.8E-05 33.8 3.1 53 3-57 45-98 (233)
55 PTZ00370 STEVOR; Provisional 86.4 1.2 2.6E-05 34.3 4.0 17 115-131 276-292 (296)
56 TIGR01478 STEVOR variant surfa 85.8 0.73 1.6E-05 35.4 2.6 21 107-127 270-292 (295)
57 PF07204 Orthoreo_P10: Orthore 85.8 1.3 2.9E-05 28.3 3.3 29 95-123 42-70 (98)
58 smart00365 LRR_SD22 Leucine-ri 85.6 0.69 1.5E-05 22.4 1.6 14 23-36 1-14 (26)
59 smart00364 LRR_BAC Leucine-ric 85.6 0.48 1E-05 23.0 1.0 18 24-42 2-19 (26)
60 PF06305 DUF1049: Protein of u 82.9 5.1 0.00011 23.5 5.0 7 103-109 27-33 (68)
61 PF02009 Rifin_STEVOR: Rifin/s 82.4 3.2 6.9E-05 32.3 4.9 9 124-132 288-296 (299)
62 KOG1644 U2-associated snRNP A' 80.4 1.7 3.7E-05 32.2 2.6 59 1-59 65-125 (233)
63 KOG0531 Protein phosphatase 1, 80.1 0.86 1.9E-05 36.7 1.1 36 1-38 119-154 (414)
64 PF03229 Alpha_GJ: Alphavirus 78.7 9.4 0.0002 25.5 5.4 17 113-129 103-119 (126)
65 PF06305 DUF1049: Protein of u 78.3 7.8 0.00017 22.7 4.7 39 93-131 21-59 (68)
66 KOG4658 Apoptotic ATPase [Sign 77.9 1 2.2E-05 40.1 1.0 41 1-42 596-636 (889)
67 KOG0532 Leucine-rich repeat (L 77.9 0.4 8.8E-06 40.5 -1.4 35 3-38 101-135 (722)
68 PF06697 DUF1191: Protein of u 77.8 5.8 0.00013 30.6 4.9 36 96-131 215-250 (278)
69 PF02480 Herpes_gE: Alphaherpe 77.4 0.74 1.6E-05 37.7 0.0 18 110-127 369-386 (439)
70 PF08374 Protocadherin: Protoc 76.4 2.1 4.5E-05 31.7 2.0 22 96-117 39-60 (221)
71 PF12273 RCR: Chitin synthesis 73.1 3.9 8.4E-05 27.6 2.7 14 113-126 15-28 (130)
72 KOG3207 Beta-tubulin folding c 72.1 1.6 3.6E-05 35.8 0.7 41 2-42 148-190 (505)
73 PF08114 PMP1_2: ATPase proteo 69.8 12 0.00025 20.2 3.4 12 115-126 27-38 (43)
74 PF12768 Rax2: Cortical protei 68.8 5.2 0.00011 30.9 2.8 24 94-117 228-251 (281)
75 PF06365 CD34_antigen: CD34/Po 66.7 3.9 8.4E-05 30.0 1.6 19 119-137 124-142 (202)
76 KOG3207 Beta-tubulin folding c 66.7 1.4 3E-05 36.2 -0.7 14 23-36 245-258 (505)
77 PF01102 Glycophorin_A: Glycop 64.5 9.8 0.00021 25.6 3.1 13 94-106 67-79 (122)
78 TIGR00864 PCC polycystin catio 63.6 4.7 0.0001 40.0 1.9 31 6-36 1-31 (2740)
79 PHA03099 epidermal growth fact 63.1 5.8 0.00013 27.0 1.8 32 100-131 105-136 (139)
80 KOG3763 mRNA export factor TAP 62.9 3.8 8.2E-05 34.5 1.1 57 2-59 220-282 (585)
81 PRK15386 type III secretion pr 62.9 8.6 0.00019 31.5 3.1 9 2-10 96-104 (426)
82 PF03302 VSP: Giardia variant- 62.8 4.5 9.8E-05 32.7 1.5 25 94-118 368-392 (397)
83 PF11120 DUF2636: Protein of u 61.7 27 0.00058 20.6 4.3 21 113-133 19-39 (62)
84 TIGR03141 cytochro_ccmD heme e 60.3 26 0.00057 19.0 4.9 12 120-131 28-39 (45)
85 PF14316 DUF4381: Domain of un 56.0 30 0.00064 23.7 4.5 11 120-130 41-51 (146)
86 PF04995 CcmD: Heme exporter p 55.3 33 0.00072 18.7 4.8 22 110-131 17-38 (46)
87 COG5238 RNA1 Ran GTPase-activa 54.2 13 0.00028 29.1 2.6 35 2-36 94-132 (388)
88 PF12606 RELT: Tumour necrosis 53.6 8.2 0.00018 21.8 1.1 19 114-132 18-36 (50)
89 KOG2120 SCF ubiquitin ligase, 53.3 1.4 2.9E-05 34.8 -2.8 44 1-44 186-230 (419)
90 PF05283 MGC-24: Multi-glycosy 52.2 27 0.00059 25.3 3.9 21 97-117 160-180 (186)
91 PF00558 Vpu: Vpu protein; In 52.0 24 0.00052 22.0 3.1 38 96-133 10-47 (81)
92 PRK06531 yajC preprotein trans 50.7 32 0.00069 22.9 3.8 11 121-131 22-32 (113)
93 PF04971 Lysis_S: Lysis protei 50.4 28 0.0006 21.0 3.1 21 97-117 35-55 (68)
94 PHA03265 envelope glycoprotein 49.4 15 0.00033 29.3 2.3 21 107-127 360-380 (402)
95 PF06295 DUF1043: Protein of u 48.6 39 0.00084 22.8 4.0 8 103-110 5-12 (128)
96 PF15179 Myc_target_1: Myc tar 47.6 27 0.00058 25.3 3.2 15 96-110 21-35 (197)
97 PRK11677 hypothetical protein; 46.6 46 0.001 22.8 4.1 13 102-114 8-20 (134)
98 PF14584 DUF4446: Protein of u 46.4 50 0.0011 23.0 4.4 9 120-128 27-35 (151)
99 KOG1909 Ran GTPase-activating 46.2 8.1 0.00017 30.9 0.4 36 1-36 93-132 (382)
100 PF15179 Myc_target_1: Myc tar 44.7 32 0.00068 24.9 3.2 26 93-118 22-47 (197)
101 KOG2739 Leucine-rich acidic nu 44.5 10 0.00022 28.9 0.8 38 20-57 61-101 (260)
102 PRK04778 septation ring format 43.3 45 0.00097 28.3 4.5 9 124-132 26-34 (569)
103 PF07253 Gypsy: Gypsy protein; 42.6 41 0.0009 28.0 4.0 35 100-134 420-454 (472)
104 COG1862 YajC Preprotein transl 41.7 71 0.0015 20.6 4.2 15 120-134 28-42 (97)
105 KOG2982 Uncharacterized conser 39.6 26 0.00057 27.9 2.3 32 2-33 99-130 (418)
106 PF14991 MLANA: Protein melan- 37.8 8.7 0.00019 25.5 -0.4 8 124-131 52-59 (118)
107 PF02060 ISK_Channel: Slow vol 36.8 68 0.0015 21.8 3.7 26 95-120 44-69 (129)
108 TIGR03546 conserved hypothetic 36.4 1E+02 0.0022 21.6 4.7 14 101-114 111-124 (154)
109 PF12877 DUF3827: Domain of un 36.3 35 0.00077 29.5 2.7 15 94-108 269-283 (684)
110 TIGR00847 ccoS cytochrome oxid 35.6 66 0.0014 18.2 3.0 17 100-116 8-24 (51)
111 PF02480 Herpes_gE: Alphaherpe 35.4 12 0.00027 30.7 0.0 25 106-130 362-386 (439)
112 TIGR01478 STEVOR variant surfa 35.0 50 0.0011 25.6 3.2 21 107-127 267-287 (295)
113 PRK10381 LPS O-antigen length 33.8 89 0.0019 25.2 4.6 18 102-119 344-361 (377)
114 PF05808 Podoplanin: Podoplani 33.0 14 0.00031 26.1 0.0 17 101-117 137-153 (162)
115 TIGR03546 conserved hypothetic 32.7 1.3E+02 0.0029 21.0 4.8 36 95-130 109-144 (154)
116 PF03597 CcoS: Cytochrome oxid 32.5 78 0.0017 17.3 2.9 17 100-116 7-23 (45)
117 PF02158 Neuregulin: Neureguli 31.7 16 0.00034 29.5 0.0 23 101-123 14-37 (404)
118 PF06716 DUF1201: Protein of u 31.2 1E+02 0.0022 17.1 3.8 20 98-117 9-28 (54)
119 PTZ00370 STEVOR; Provisional 30.7 75 0.0016 24.8 3.5 10 114-123 272-281 (296)
120 PF13807 GNVR: G-rich domain o 30.1 74 0.0016 19.3 2.9 18 100-117 62-79 (82)
121 PF13120 DUF3974: Domain of un 29.9 21 0.00045 23.1 0.3 20 100-119 11-30 (126)
122 PF05337 CSF-1: Macrophage col 29.8 17 0.00038 27.9 0.0 22 100-121 231-252 (285)
123 PHA03291 envelope glycoprotein 28.6 21 0.00046 28.5 0.3 30 95-124 288-317 (401)
124 COG3105 Uncharacterized protei 28.5 1.5E+02 0.0033 20.2 4.3 16 100-115 11-26 (138)
125 TIGR00864 PCC polycystin catio 28.5 33 0.00072 34.6 1.5 36 30-65 1-37 (2740)
126 PRK15386 type III secretion pr 28.2 57 0.0012 26.8 2.7 20 24-43 94-113 (426)
127 PF10808 DUF2542: Protein of u 27.6 1.5E+02 0.0032 18.2 3.7 24 113-136 16-39 (79)
128 PF07213 DAP10: DAP10 membrane 27.4 23 0.0005 22.0 0.2 12 106-117 46-57 (79)
129 KOG1909 Ran GTPase-activating 27.1 30 0.00066 27.8 0.9 37 2-38 187-227 (382)
130 PF15176 LRR19-TM: Leucine-ric 26.8 1.9E+02 0.0041 18.9 4.6 12 97-108 16-27 (102)
131 PF14851 FAM176: FAM176 family 26.8 57 0.0012 22.9 2.1 6 112-117 38-43 (153)
132 PF12597 DUF3767: Protein of u 26.8 1.9E+02 0.004 19.3 4.5 21 114-134 83-103 (118)
133 PF07010 Endomucin: Endomucin; 26.0 87 0.0019 23.6 3.0 7 100-106 193-199 (259)
134 PRK14762 membrane protein; Pro 25.9 90 0.0019 14.9 2.3 13 100-112 8-20 (27)
135 TIGR03493 cellullose_BcsF cell 25.4 1.5E+02 0.0033 17.4 3.9 17 116-132 22-38 (62)
136 PRK10381 LPS O-antigen length 24.9 1E+02 0.0022 24.8 3.5 29 92-120 338-366 (377)
137 PF11694 DUF3290: Protein of u 24.6 91 0.002 21.7 2.8 10 116-125 37-46 (149)
138 COG4477 EzrA Negative regulato 24.6 1.3E+02 0.0028 25.7 4.0 15 103-117 7-21 (570)
139 PF10577 UPF0560: Uncharacteri 24.4 54 0.0012 29.1 2.0 14 95-108 273-286 (807)
140 PF14986 DUF4514: Domain of un 23.8 1.2E+02 0.0027 17.3 2.7 12 96-107 23-34 (61)
141 KOG3054 Uncharacterized conser 23.5 1E+02 0.0022 23.6 3.0 11 108-118 13-23 (299)
142 COG3765 WzzB Chain length dete 23.2 1.6E+02 0.0035 23.6 4.2 12 103-114 323-334 (347)
143 PF05961 Chordopox_A13L: Chord 22.9 1.3E+02 0.0029 18.0 2.8 9 106-114 10-18 (68)
144 PF12297 EVC2_like: Ellis van 22.8 1.1E+02 0.0023 25.2 3.2 22 96-117 66-87 (429)
145 smart00367 LRR_CC Leucine-rich 21.9 68 0.0015 14.7 1.3 11 24-34 2-12 (26)
146 PF04367 DUF502: Protein of un 21.8 2.3E+02 0.005 18.2 4.3 12 123-134 21-32 (108)
147 PLN03155 cytochrome c oxidase 21.8 1.8E+02 0.004 17.0 4.0 8 101-108 21-28 (63)
148 PHA03105 EEV glycoprotein; Pro 21.7 93 0.002 22.1 2.4 18 100-117 7-24 (188)
149 PF02430 AMA-1: Apical membran 21.5 31 0.00067 28.5 0.0 21 103-123 437-457 (471)
150 PF12301 CD99L2: CD99 antigen 21.3 1.3E+02 0.0027 21.5 3.1 8 110-117 129-136 (169)
151 PF08374 Protocadherin: Protoc 21.3 1.1E+02 0.0023 22.9 2.7 24 94-117 40-63 (221)
152 PF04418 DUF543: Domain of unk 21.3 1.6E+02 0.0036 17.9 3.2 8 112-119 43-50 (75)
153 COG3197 FixS Uncharacterized p 21.2 1.1E+02 0.0023 17.8 2.2 18 100-117 8-25 (58)
154 PF10873 DUF2668: Protein of u 20.8 83 0.0018 21.9 1.9 16 98-113 66-81 (155)
155 PTZ00473 Plasmodium Vir superf 20.8 1.2E+02 0.0025 24.9 3.0 7 120-126 302-308 (420)
156 PF02937 COX6C: Cytochrome c o 20.2 2.2E+02 0.0047 17.3 4.5 7 102-108 23-29 (73)
No 1
>PLN03150 hypothetical protein; Provisional
Probab=99.50 E-value=4.5e-14 Score=118.33 Aligned_cols=70 Identities=34% Similarity=0.523 Sum_probs=46.1
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccc--cccCCccccccccCCcCCCCCCCCC
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQ--FATFDDRSYKGNSALCGSMIKRKCS 70 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~--~~~~~~~~~~gn~~lcg~~~~~~c~ 70 (147)
+|+.|||++|+|+|.+|..+++|++|+.|||++|+|+|.+|..+. ...+....+.+|+.+|+.+....|.
T Consensus 467 ~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 467 SLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 356677777777777777777777777777777777777776541 2233455677888888765444553
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.34 E-value=2e-12 Score=112.69 Aligned_cols=64 Identities=38% Similarity=0.667 Sum_probs=48.3
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCccccccccCCcCCC
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSALCGSM 64 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~~lcg~~ 64 (147)
+|+.|||++|+++|.+|..+.+++.|+.+|+++|+++|.+|...++.++...++.||+.+||.+
T Consensus 548 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 548 VLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred cCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 3667777777777777777777777777777777777777776667777777788888888754
No 3
>PLN03150 hypothetical protein; Provisional
Probab=99.04 E-value=3.9e-10 Score=94.78 Aligned_cols=60 Identities=33% Similarity=0.610 Sum_probs=51.8
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCC
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSAL 60 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~l 60 (147)
+|+.|||++|+|+|.+|..++.++.|+.|||++|+|+|.+|..+ .+.++..+.+.+|...
T Consensus 443 ~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~ 503 (623)
T PLN03150 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503 (623)
T ss_pred CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccc
Confidence 47889999999999999999999999999999999999999876 6777777777777543
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.95 E-value=2.4e-09 Score=93.59 Aligned_cols=62 Identities=35% Similarity=0.519 Sum_probs=48.0
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcC
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCG 62 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg 62 (147)
+|+.|||++|+++|.+|..++.++.|+.||+++|+++|.+|..+ .+..+....+.+|+..+.
T Consensus 524 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~ 586 (968)
T PLN00113 524 KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGS 586 (968)
T ss_pred CCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceee
Confidence 36778888888888888888888888888888888888888766 456667777777765543
No 5
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.54 E-value=7.5e-08 Score=53.52 Aligned_cols=36 Identities=42% Similarity=0.704 Sum_probs=32.1
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCC
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLS 37 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~ 37 (147)
+|++||+++|+++ .||+.+++|+.|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 5899999999999 68999999999999999999987
No 6
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.41 E-value=1.6e-07 Score=55.45 Aligned_cols=58 Identities=33% Similarity=0.424 Sum_probs=47.4
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCcccccccc
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNS 58 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~ 58 (147)
+|+.|++++|+++.--+..+..++.|++|++++|+++.--|..+ .+..+..+.+.+|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 58999999999997666789999999999999999986666554 56667777777764
No 7
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.87 E-value=9.9e-06 Score=47.69 Aligned_cols=36 Identities=39% Similarity=0.541 Sum_probs=33.3
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcC
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNL 36 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l 36 (147)
+|+.||+++|+++.--|..|..++.|+++++++|+|
T Consensus 26 ~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 26 NLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 488999999999988888999999999999999985
No 8
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.86 E-value=6.4e-06 Score=38.82 Aligned_cols=22 Identities=45% Similarity=0.708 Sum_probs=17.4
Q ss_pred CccEEECCCCcccccCchhhhcC
Q 046778 1 MIESLDLSRNKLSGRIPPQLTEL 23 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l 23 (147)
+|++||||+|+++ .||+++++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 5788999999999 888887653
No 9
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.02 E-value=0.00019 Score=62.12 Aligned_cols=38 Identities=32% Similarity=0.411 Sum_probs=20.3
Q ss_pred EECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCc
Q 046778 5 LDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDK 43 (147)
Q Consensus 5 LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~ 43 (147)
|||++|+|+ .||..+.+++.|+.++|++|+|+|.+|..
T Consensus 427 L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~ 464 (788)
T PRK15387 427 LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 464 (788)
T ss_pred hhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence 344444443 45555555556666666666666555553
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.89 E-value=0.0013 Score=59.44 Aligned_cols=59 Identities=15% Similarity=0.189 Sum_probs=49.2
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCccccccccC
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSA 59 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~~ 59 (147)
+|+.|+|++|...+.+|.+++++++|+.|++++|+.-+.+|....+.++..+.+.|+..
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~ 837 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSR 837 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCc
Confidence 47889999999999999999999999999999987778899876666666666666543
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.66 E-value=0.0012 Score=53.16 Aligned_cols=57 Identities=25% Similarity=0.331 Sum_probs=46.7
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCccccccccC
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSA 59 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~~ 59 (147)
+|..|||..|.|+ ++|+++.-+.+|+.||+|+|.+++--|+-..+ .+..+...|||.
T Consensus 253 ~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 253 SLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred cceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCch
Confidence 3678999999998 69999999999999999999999865553344 566667788864
No 12
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.62 E-value=0.002 Score=46.14 Aligned_cols=35 Identities=34% Similarity=0.520 Sum_probs=10.4
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSG 38 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G 38 (147)
|+.||||+|.++. |+ .+..++.|++|++++|+++.
T Consensus 44 L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~ 78 (175)
T PF14580_consen 44 LEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISS 78 (175)
T ss_dssp --EEE-TTS--S---T-T----TT--EEE--SS---S
T ss_pred CCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCc
Confidence 5566666666663 32 35556666666666666653
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.55 E-value=0.00091 Score=53.74 Aligned_cols=39 Identities=31% Similarity=0.561 Sum_probs=28.1
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCc
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDK 43 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~ 43 (147)
|..|||.+|.+. +||+.+++|++|++|++++|.|. .|..
T Consensus 507 L~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr~ 545 (565)
T KOG0472|consen 507 LTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QPRH 545 (565)
T ss_pred cceeccCCCchh-hCChhhccccceeEEEecCCccC--CCHH
Confidence 567777777776 57777777777777777777776 4443
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.47 E-value=0.0016 Score=56.51 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=17.8
Q ss_pred CCCeeecCCCcCCCCCCCcc-ccccCCcccccccc
Q 046778 25 FLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNS 58 (147)
Q Consensus 25 ~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~ 58 (147)
.|..|++++|+++ .+|.++ .+..+..+.+.+|+
T Consensus 423 ~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 423 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred hhhhhhhccCccc-ccChHHhhccCCCeEECCCCC
Confidence 3445555555554 455544 34555555666664
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.30 E-value=0.0026 Score=50.96 Aligned_cols=64 Identities=17% Similarity=0.212 Sum_probs=49.1
Q ss_pred CccEEECCCCcccccCchhh------------------------hcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccc
Q 046778 1 MIESLDLSRNKLSGRIPPQL------------------------TELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYK 55 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~------------------------~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~ 55 (147)
.|+.||||+|.+++.-+.+| .++..|++|+|.+|+++-.-|..+ ...++..+.+.
T Consensus 275 ~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~ 354 (498)
T KOG4237|consen 275 NLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLL 354 (498)
T ss_pred cceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehc
Confidence 47789999999998777664 345677888999999988888765 45666777788
Q ss_pred cccCCcCCC
Q 046778 56 GNSALCGSM 64 (147)
Q Consensus 56 gn~~lcg~~ 64 (147)
+|+..|...
T Consensus 355 ~Np~~CnC~ 363 (498)
T KOG4237|consen 355 SNPFNCNCR 363 (498)
T ss_pred cCcccCccc
Confidence 999888653
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.27 E-value=0.0067 Score=54.89 Aligned_cols=57 Identities=21% Similarity=0.255 Sum_probs=35.2
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCcccccccc
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNS 58 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~ 58 (147)
|+.|+|++|.....+|..++++++|+.|++++|+.-+.+|....+.++..+.+.|+.
T Consensus 659 Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 659 LETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCS 715 (1153)
T ss_pred ccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCC
Confidence 566666666655666666666777777777766555666665444555555555543
No 17
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.25 E-value=0.0012 Score=30.88 Aligned_cols=18 Identities=39% Similarity=0.549 Sum_probs=16.1
Q ss_pred CCCeeecCCCcCCCCCCCc
Q 046778 25 FLSNFNVSYNNLSGPIPDK 43 (147)
Q Consensus 25 ~L~~l~ls~N~l~G~iP~~ 43 (147)
+|+.||+++|+++ .||.+
T Consensus 1 ~L~~Ldls~n~l~-~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSS 18 (22)
T ss_dssp TESEEEETSSEES-EEGTT
T ss_pred CccEEECCCCcCE-eCChh
Confidence 4789999999999 89985
No 18
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=96.24 E-value=0.0021 Score=54.60 Aligned_cols=34 Identities=38% Similarity=0.559 Sum_probs=19.1
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNL 36 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l 36 (147)
|..||||+|+|+ +.|..+..-+++..||||+|++
T Consensus 105 Lt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~I 138 (1255)
T KOG0444|consen 105 LTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNI 138 (1255)
T ss_pred ceeeecchhhhh-hcchhhhhhcCcEEEEcccCcc
Confidence 455666666665 3555555555555555555554
No 19
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.11 E-value=0.0037 Score=44.82 Aligned_cols=58 Identities=28% Similarity=0.331 Sum_probs=23.3
Q ss_pred CccEEECCCCcccccCchhh-hcCCCCCeeecCCCcCCCCCCC-cc-ccccCCccccccccC
Q 046778 1 MIESLDLSRNKLSGRIPPQL-TELNFLSNFNVSYNNLSGPIPD-KE-QFATFDDRSYKGNSA 59 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~-~~l~~L~~l~ls~N~l~G~iP~-~~-~~~~~~~~~~~gn~~ 59 (147)
+|+.|++++|+++. ++..+ ..+++|+.|++++|++..---- .+ .++++..++..|||-
T Consensus 65 ~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 65 RLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp T--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred hhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 47788999999884 55545 3688889999999888652111 11 456666667777753
No 20
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.99 E-value=0.0007 Score=47.01 Aligned_cols=38 Identities=26% Similarity=0.530 Sum_probs=30.3
Q ss_pred cEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCC
Q 046778 3 ESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIP 41 (147)
Q Consensus 3 ~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP 41 (147)
+.|+|++|.++ .+|.++..++.|+.+|+++|.|+-..-
T Consensus 80 t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~p~ 117 (177)
T KOG4579|consen 80 TTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAEPR 117 (177)
T ss_pred hhhhcchhhhh-hchHHHhhhHHhhhcccccCccccchH
Confidence 46788888887 588888888888999999888876543
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=95.68 E-value=0.014 Score=50.68 Aligned_cols=13 Identities=23% Similarity=0.345 Sum_probs=6.5
Q ss_pred CCCeeecCCCcCC
Q 046778 25 FLSNFNVSYNNLS 37 (147)
Q Consensus 25 ~L~~l~ls~N~l~ 37 (147)
.|+.|++++|+|+
T Consensus 263 ~L~~L~Ls~N~L~ 275 (754)
T PRK15370 263 ALQSLDLFHNKIS 275 (754)
T ss_pred CCCEEECcCCccC
Confidence 4455555555554
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=95.40 E-value=0.015 Score=50.48 Aligned_cols=33 Identities=30% Similarity=0.598 Sum_probs=15.0
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLS 37 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~ 37 (147)
|+.|||++|+|+ .+|..+. +.|+.|++++|+|+
T Consensus 348 L~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt 380 (754)
T PRK15370 348 LQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT 380 (754)
T ss_pred ccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC
Confidence 344444444444 2443332 34555555555554
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=95.38 E-value=0.0048 Score=44.56 Aligned_cols=33 Identities=36% Similarity=0.581 Sum_probs=13.0
Q ss_pred cEEECCCCcccccCchhhhcCCCCCeeecCCCcC
Q 046778 3 ESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNL 36 (147)
Q Consensus 3 ~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l 36 (147)
+.|++++|++. ++|.+++.|+.|+.||++-|.|
T Consensus 59 evln~~nnqie-~lp~~issl~klr~lnvgmnrl 91 (264)
T KOG0617|consen 59 EVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL 91 (264)
T ss_pred hhhhcccchhh-hcChhhhhchhhhheecchhhh
Confidence 33444444443 2344444444443333333333
No 24
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.26 E-value=0.011 Score=32.56 Aligned_cols=34 Identities=15% Similarity=0.368 Sum_probs=25.2
Q ss_pred CCCCeeecCCCcCCCCCCCcc-ccccCCcccccccc
Q 046778 24 NFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNS 58 (147)
Q Consensus 24 ~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~ 58 (147)
++|++|++++|+++ .+|..+ .+..+..+.+.+|+
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCC
Confidence 47899999999999 577644 67788887887774
No 25
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.22 E-value=0.0077 Score=47.05 Aligned_cols=36 Identities=31% Similarity=0.312 Sum_probs=28.1
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGP 39 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~ 39 (147)
++.||+|+|.+.-. ..++.|.+|..||||+|.|+-.
T Consensus 309 ir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~ 344 (490)
T KOG1259|consen 309 LRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAEC 344 (490)
T ss_pred eeEEeccccceeee--hhhhhcccceEeecccchhHhh
Confidence 56788888888743 3378889999999999988643
No 26
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.20 E-value=0.0024 Score=54.84 Aligned_cols=62 Identities=27% Similarity=0.365 Sum_probs=43.1
Q ss_pred CccEEECCCCcccccCchh----------------------hhcCCCCCeeecCCCcCCCCCCCcc--ccccCCcccccc
Q 046778 1 MIESLDLSRNKLSGRIPPQ----------------------LTELNFLSNFNVSYNNLSGPIPDKE--QFATFDDRSYKG 56 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~----------------------~~~l~~L~~l~ls~N~l~G~iP~~~--~~~~~~~~~~~g 56 (147)
.|.+||||+|+|+- +|.. +.+|.+|+.||+|+|-|+|----.. .+..+..+.+.|
T Consensus 210 ~LkhLDlsyN~L~~-vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeG 288 (1096)
T KOG1859|consen 210 KLKHLDLSYNCLRH-VPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEG 288 (1096)
T ss_pred cccccccccchhcc-ccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcC
Confidence 36778888888873 3422 4567888999999998887433221 455666677889
Q ss_pred ccCCcCC
Q 046778 57 NSALCGS 63 (147)
Q Consensus 57 n~~lcg~ 63 (147)
||..|.+
T Consensus 289 NPl~c~p 295 (1096)
T KOG1859|consen 289 NPLCCAP 295 (1096)
T ss_pred CccccCH
Confidence 9888854
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=95.08 E-value=0.01 Score=45.29 Aligned_cols=38 Identities=29% Similarity=0.452 Sum_probs=27.3
Q ss_pred CccEEECCCCccccc----CchhhhcCCCCCeeecCCCcCCC
Q 046778 1 MIESLDLSRNKLSGR----IPPQLTELNFLSNFNVSYNNLSG 38 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~----iP~~~~~l~~L~~l~ls~N~l~G 38 (147)
+|+.|+|++|++++. ++..+..+..|+.|++++|++++
T Consensus 138 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 179 (319)
T cd00116 138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD 179 (319)
T ss_pred CceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch
Confidence 367888888888854 34445566778888888888875
No 28
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=94.98 E-value=0.0071 Score=51.49 Aligned_cols=56 Identities=23% Similarity=0.284 Sum_probs=34.0
Q ss_pred ccEEECCCCcccccCchh-hhcCCCCCeeecCCCcCCCCCCCccccccCCcccccccc
Q 046778 2 IESLDLSRNKLSGRIPPQ-LTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNS 58 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~-~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~ 58 (147)
+..|+||+|++. +||.. +.+|+.|-+||||+|.|.--.|+-..+..+..+.+.+||
T Consensus 128 ~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 128 SIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP 184 (1255)
T ss_pred cEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh
Confidence 346778887776 46655 457777777788877776555543333344444444443
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=94.82 E-value=0.012 Score=44.89 Aligned_cols=38 Identities=26% Similarity=0.430 Sum_probs=23.8
Q ss_pred ccEEECCCCcccc----cCchhhhcC-CCCCeeecCCCcCCCC
Q 046778 2 IESLDLSRNKLSG----RIPPQLTEL-NFLSNFNVSYNNLSGP 39 (147)
Q Consensus 2 L~~LdLs~N~LsG----~iP~~~~~l-~~L~~l~ls~N~l~G~ 39 (147)
|++||+++|++++ .+...+..+ +.|+.|++++|++++.
T Consensus 110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 152 (319)
T cd00116 110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA 152 (319)
T ss_pred ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCch
Confidence 6667777777663 334445555 6677777777777654
No 30
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=94.68 E-value=0.0091 Score=50.28 Aligned_cols=40 Identities=23% Similarity=0.189 Sum_probs=20.7
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIP 41 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP 41 (147)
|+.||||+|.++---++.+.-...|+.||||+|+++---|
T Consensus 295 L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~ 334 (873)
T KOG4194|consen 295 LEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDE 334 (873)
T ss_pred hhhhccchhhhheeecchhhhcccceeEeccccccccCCh
Confidence 4445555555555555555555555555555555544333
No 31
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=94.53 E-value=0.021 Score=50.45 Aligned_cols=53 Identities=23% Similarity=0.342 Sum_probs=43.4
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccc
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYK 55 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~ 55 (147)
|..||||+|.=-+++|.++++|-+|++||+++..++ .+|.++ .+..+..+...
T Consensus 573 LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~ 626 (889)
T KOG4658|consen 573 LRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLE 626 (889)
T ss_pred eEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccc
Confidence 678999998888999999999999999999999888 788876 44554444433
No 32
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=94.32 E-value=0.017 Score=48.75 Aligned_cols=57 Identities=25% Similarity=0.314 Sum_probs=47.6
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcccc-ccCCccccccc
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQF-ATFDDRSYKGN 57 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~-~~~~~~~~~gn 57 (147)
++++|||+.|+++-.=-.++-+|+.|+.||||+|.+.---++++.| +++..+++..|
T Consensus 270 kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N 327 (873)
T KOG4194|consen 270 KMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN 327 (873)
T ss_pred ccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccc
Confidence 4688999999999888888999999999999999998888887744 56666665555
No 33
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.78 E-value=0.045 Score=23.78 Aligned_cols=13 Identities=31% Similarity=0.452 Sum_probs=7.1
Q ss_pred CCCeeecCCCcCC
Q 046778 25 FLSNFNVSYNNLS 37 (147)
Q Consensus 25 ~L~~l~ls~N~l~ 37 (147)
+|+.|++++|+|+
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 5677777777764
No 34
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.62 E-value=0.021 Score=26.90 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=13.0
Q ss_pred CccEEECCCCcccccCchhhh
Q 046778 1 MIESLDLSRNKLSGRIPPQLT 21 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~ 21 (147)
+|+.|||++|+++..-...++
T Consensus 3 ~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 3 NLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp T-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCEEEccCCcCCHHHHHHhC
Confidence 467888888888776555443
No 35
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=93.52 E-value=0.023 Score=49.09 Aligned_cols=35 Identities=40% Similarity=0.530 Sum_probs=30.7
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSG 38 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G 38 (147)
|++||||+|.++-.- .+..++.|++||+++|+|.-
T Consensus 189 le~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~ 223 (1096)
T KOG1859|consen 189 LESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRH 223 (1096)
T ss_pred hhhhccchhhhhhhH--HHHhcccccccccccchhcc
Confidence 678999999999653 78889999999999999964
No 36
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=93.27 E-value=0.016 Score=50.87 Aligned_cols=59 Identities=29% Similarity=0.430 Sum_probs=30.2
Q ss_pred ccEEECCCCcccccCchh-hhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcC
Q 046778 2 IESLDLSRNKLSGRIPPQ-LTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCG 62 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~-~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg 62 (147)
|+.|+||+|+|. ++|+. +.++..|+.|+||+|+|+ .+|.+. ....+..+.-.+|..+|-
T Consensus 385 LKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~f 445 (1081)
T KOG0618|consen 385 LKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSF 445 (1081)
T ss_pred eeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeec
Confidence 556666666665 34433 455666666666666664 345443 233333333344544443
No 37
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=93.10 E-value=0.036 Score=48.79 Aligned_cols=41 Identities=29% Similarity=0.429 Sum_probs=35.7
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCc
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDK 43 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~ 43 (147)
+|+++|+|+|+|++ +|++++.+.+|+.++..+|+| -.+|..
T Consensus 242 nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l-~~lp~r 282 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSN-LPEWIGACANLEALNANHNRL-VALPLR 282 (1081)
T ss_pred cceeeecchhhhhc-chHHHHhcccceEecccchhH-HhhHHH
Confidence 47899999999997 789999999999999999999 455543
No 38
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=93.08 E-value=0.038 Score=44.54 Aligned_cols=55 Identities=27% Similarity=0.323 Sum_probs=41.8
Q ss_pred cEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778 3 ESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN 57 (147)
Q Consensus 3 ~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn 57 (147)
..++|..|+++---|..|+.+..|+.+|||+|+++-.-|..+ .+..+..+...||
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcC
Confidence 468999999997777779999999999999999998888755 3344444444443
No 39
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=92.97 E-value=0.012 Score=42.64 Aligned_cols=42 Identities=24% Similarity=0.515 Sum_probs=33.7
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCC-CCCCc
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSG-PIPDK 43 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G-~iP~~ 43 (147)
+|..|+++-|+|. ..|..|+.++.|+.||+++|+|+- .+|-.
T Consensus 80 klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgn 122 (264)
T KOG0617|consen 80 KLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGN 122 (264)
T ss_pred hhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcc
Confidence 4677888888887 478889999999999999998875 45543
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=92.51 E-value=0.05 Score=43.18 Aligned_cols=36 Identities=42% Similarity=0.717 Sum_probs=20.4
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSG 38 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G 38 (147)
|+.||+++|++. .+|..+.+++.|+.|++++|+++-
T Consensus 142 L~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~ 177 (394)
T COG4886 142 LKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD 177 (394)
T ss_pred cccccccccchh-hhhhhhhccccccccccCCchhhh
Confidence 455666666665 344455566666666666665543
No 41
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.62 E-value=0.1 Score=39.56 Aligned_cols=38 Identities=26% Similarity=0.355 Sum_probs=33.0
Q ss_pred CccEEECCCC--cccccCchhhhcCCCCCeeecCCCcCCC
Q 046778 1 MIESLDLSRN--KLSGRIPPQLTELNFLSNFNVSYNNLSG 38 (147)
Q Consensus 1 ~L~~LdLs~N--~LsG~iP~~~~~l~~L~~l~ls~N~l~G 38 (147)
+|+.|++|.| +.+|..+...-.+++|+++++|.|++.-
T Consensus 66 ~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~ 105 (260)
T KOG2739|consen 66 KLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD 105 (260)
T ss_pred hhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc
Confidence 4789999999 7788888888888999999999998864
No 42
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.18 E-value=0.18 Score=24.03 Aligned_cols=17 Identities=35% Similarity=0.399 Sum_probs=13.4
Q ss_pred CCCCCeeecCCCcCCCC
Q 046778 23 LNFLSNFNVSYNNLSGP 39 (147)
Q Consensus 23 l~~L~~l~ls~N~l~G~ 39 (147)
|+.|+.|+|++|+++--
T Consensus 1 L~~L~~L~L~~N~l~~l 17 (26)
T smart00370 1 LPNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCCEEECCCCcCCcC
Confidence 46789999999987643
No 43
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.18 E-value=0.18 Score=24.03 Aligned_cols=17 Identities=35% Similarity=0.399 Sum_probs=13.4
Q ss_pred CCCCCeeecCCCcCCCC
Q 046778 23 LNFLSNFNVSYNNLSGP 39 (147)
Q Consensus 23 l~~L~~l~ls~N~l~G~ 39 (147)
|+.|+.|+|++|+++--
T Consensus 1 L~~L~~L~L~~N~l~~l 17 (26)
T smart00369 1 LPNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCCEEECCCCcCCcC
Confidence 46789999999987643
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=91.15 E-value=0.14 Score=41.33 Aligned_cols=56 Identities=23% Similarity=0.303 Sum_probs=37.0
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCcccccccc
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNS 58 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~ 58 (147)
+|..|||..|++.+. ...+..+++|++||+|+|+++..-+.. .+..+..+.+.||.
T Consensus 96 ~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~l~-~l~~L~~L~l~~N~ 151 (414)
T KOG0531|consen 96 SLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEGLS-TLTLLKELNLSGNL 151 (414)
T ss_pred ceeeeeccccchhhc-ccchhhhhcchheeccccccccccchh-hccchhhheeccCc
Confidence 367788888888864 333677888888888888887766543 22334445555553
No 45
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=91.01 E-value=0.16 Score=42.79 Aligned_cols=37 Identities=30% Similarity=0.511 Sum_probs=34.1
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGP 39 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~ 39 (147)
|..||+|.|+++ .||..|-+|+.|++|-|.+|-|.-+
T Consensus 213 Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 213 LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCC
Confidence 778999999999 6999999999999999999999765
No 46
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=89.14 E-value=0.12 Score=36.08 Aligned_cols=8 Identities=0% Similarity=-0.296 Sum_probs=3.2
Q ss_pred hhhhhhhh
Q 046778 97 RWSFGASY 104 (147)
Q Consensus 97 ~~~~~~~~ 104 (147)
++++++|+
T Consensus 51 VIGvVVGV 58 (154)
T PF04478_consen 51 VIGVVVGV 58 (154)
T ss_pred EEEEEecc
Confidence 34443443
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.98 E-value=0.18 Score=39.52 Aligned_cols=41 Identities=37% Similarity=0.488 Sum_probs=31.9
Q ss_pred ccEEECCCCccccc--CchhhhcCCCCCeeecCCCcCCCCCCC
Q 046778 2 IESLDLSRNKLSGR--IPPQLTELNFLSNFNVSYNNLSGPIPD 42 (147)
Q Consensus 2 L~~LdLs~N~LsG~--iP~~~~~l~~L~~l~ls~N~l~G~iP~ 42 (147)
+..|||.+|.++-- |-.-+.+|+.|++||+|.|+|+..|-.
T Consensus 73 v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~ 115 (418)
T KOG2982|consen 73 VKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS 115 (418)
T ss_pred hhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc
Confidence 45789999998852 444466899999999999999876643
No 48
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=88.78 E-value=0.12 Score=27.84 Aligned_cols=14 Identities=7% Similarity=0.043 Sum_probs=5.2
Q ss_pred hhhhhHHHHHHHHH
Q 046778 100 FGASYVSVILGLFA 113 (147)
Q Consensus 100 ~~~~~~v~~~~~~~ 113 (147)
+++++-++++++++
T Consensus 15 ~~VvVPV~vI~~vl 28 (40)
T PF08693_consen 15 VGVVVPVGVIIIVL 28 (40)
T ss_pred EEEEechHHHHHHH
Confidence 33333333333333
No 49
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=88.60 E-value=0.45 Score=29.68 Aligned_cols=33 Identities=18% Similarity=0.068 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhce
Q 046778 104 YVSVILGLFAALWINSYWRRLWFYFIDRCIDTC 136 (147)
Q Consensus 104 ~~v~~~~~~~~~~~~~~~r~~~~~~~d~~~~~~ 136 (147)
+++.+.++++++.+..+++.+..+++++.+++.
T Consensus 14 v~~iiaIvvW~iv~ieYrk~~rqrkId~li~RI 46 (81)
T PF00558_consen 14 VALIIAIVVWTIVYIEYRKIKRQRKIDRLIERI 46 (81)
T ss_dssp HHHHHHHHHHHHH------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 333345555666565556666666777666543
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=88.51 E-value=0.11 Score=36.26 Aligned_cols=54 Identities=19% Similarity=0.372 Sum_probs=35.8
Q ss_pred ccEEECCCCcccccCchhhhc-CCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778 2 IESLDLSRNKLSGRIPPQLTE-LNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN 57 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~-l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn 57 (147)
|...+||.|.|.- +|..|.. .+.++.+|+++|+++- +|.++ ....+......-|
T Consensus 55 l~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~lNl~~N 110 (177)
T KOG4579|consen 55 LTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSLNLRFN 110 (177)
T ss_pred EEEEecccchhhh-CCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhcccccC
Confidence 4557899999984 5666554 5688999999999874 67655 3444444444444
No 51
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=88.23 E-value=0.37 Score=23.59 Aligned_cols=12 Identities=58% Similarity=0.833 Sum_probs=7.7
Q ss_pred ccEEECCCCccc
Q 046778 2 IESLDLSRNKLS 13 (147)
Q Consensus 2 L~~LdLs~N~Ls 13 (147)
|++|||++|.+.
T Consensus 4 L~~LdL~~N~i~ 15 (28)
T smart00368 4 LRELDLSNNKLG 15 (28)
T ss_pred cCEEECCCCCCC
Confidence 566666666664
No 52
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=87.70 E-value=0.46 Score=37.69 Aligned_cols=40 Identities=40% Similarity=0.566 Sum_probs=28.8
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCc
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDK 43 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~ 43 (147)
++.||+++|.++- ++. ++.+..|+.|++++|.++..+|..
T Consensus 257 l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 257 LETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred cceeccccccccc-ccc-ccccCccCEEeccCccccccchhh
Confidence 5677777777773 444 777778888888888777776653
No 53
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=87.21 E-value=0.25 Score=38.86 Aligned_cols=35 Identities=26% Similarity=0.319 Sum_probs=30.4
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLS 37 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~ 37 (147)
|+.||||+|.++ .|-.++--++.++.|++|+|.+.
T Consensus 286 LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~ 320 (490)
T KOG1259|consen 286 LTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR 320 (490)
T ss_pred hhhccccccchh-hhhhhhhhccceeEEecccccee
Confidence 678999999998 57777778899999999999875
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=86.46 E-value=0.84 Score=33.79 Aligned_cols=53 Identities=21% Similarity=0.330 Sum_probs=31.6
Q ss_pred cEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778 3 ESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN 57 (147)
Q Consensus 3 ~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn 57 (147)
..+||+.|.+.- + ..|..+..|.+|.+++|+++-.=|.-. .+..+..+.+.+|
T Consensus 45 d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 45 DAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred ceecccccchhh-c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 457777777752 2 335667777778888877766555432 2333445555554
No 55
>PTZ00370 STEVOR; Provisional
Probab=86.44 E-value=1.2 Score=34.34 Aligned_cols=17 Identities=12% Similarity=0.444 Sum_probs=9.3
Q ss_pred HHHhhhhhhHHHHHHHH
Q 046778 115 LWINSYWRRLWFYFIDR 131 (147)
Q Consensus 115 ~~~~~~~r~~~~~~~d~ 131 (147)
+|++|||++.|.|--.+
T Consensus 276 iwlyrrRK~swkhe~kk 292 (296)
T PTZ00370 276 IWLYRRRKNSWKHECKK 292 (296)
T ss_pred HHHHHhhcchhHHHHHh
Confidence 34455556667665443
No 56
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=85.82 E-value=0.73 Score=35.43 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHh--hhhhhHHHH
Q 046778 107 VILGLFAALWIN--SYWRRLWFY 127 (147)
Q Consensus 107 ~~~~~~~~~~~~--~~~r~~~~~ 127 (147)
.+.+++++++++ |||++.|.|
T Consensus 270 il~vvliiLYiWlyrrRK~swkh 292 (295)
T TIGR01478 270 ILTVVLIILYIWLYRRRKKSWKH 292 (295)
T ss_pred HHHHHHHHHHHHHHHhhcccccc
Confidence 333444444444 444444543
No 57
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=85.77 E-value=1.3 Score=28.28 Aligned_cols=29 Identities=3% Similarity=0.001 Sum_probs=15.9
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhhhhh
Q 046778 95 ALRWSFGASYVSVILGLFAALWINSYWRR 123 (147)
Q Consensus 95 ~~~~~~~~~~~v~~~~~~~~~~~~~~~r~ 123 (147)
+..++.+.|+++.++++.++++.+.+||.
T Consensus 42 WpyLA~GGG~iLilIii~Lv~CC~~K~K~ 70 (98)
T PF07204_consen 42 WPYLAAGGGLILILIIIALVCCCRAKHKT 70 (98)
T ss_pred hHHhhccchhhhHHHHHHHHHHhhhhhhh
Confidence 34444555666655555555555555553
No 58
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=85.63 E-value=0.69 Score=22.40 Aligned_cols=14 Identities=29% Similarity=0.487 Sum_probs=10.8
Q ss_pred CCCCCeeecCCCcC
Q 046778 23 LNFLSNFNVSYNNL 36 (147)
Q Consensus 23 l~~L~~l~ls~N~l 36 (147)
+++|+.|++++|++
T Consensus 1 L~~L~~L~L~~NkI 14 (26)
T smart00365 1 LTNLEELDLSQNKI 14 (26)
T ss_pred CCccCEEECCCCcc
Confidence 46788888888876
No 59
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=85.57 E-value=0.48 Score=23.02 Aligned_cols=18 Identities=39% Similarity=0.645 Sum_probs=13.0
Q ss_pred CCCCeeecCCCcCCCCCCC
Q 046778 24 NFLSNFNVSYNNLSGPIPD 42 (147)
Q Consensus 24 ~~L~~l~ls~N~l~G~iP~ 42 (147)
..|+.|++++|+|+. +|+
T Consensus 2 ~~L~~L~vs~N~Lt~-LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTS-LPE 19 (26)
T ss_pred cccceeecCCCcccc-Ccc
Confidence 357889999998754 443
No 60
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=82.90 E-value=5.1 Score=23.51 Aligned_cols=7 Identities=14% Similarity=0.278 Sum_probs=2.6
Q ss_pred hhHHHHH
Q 046778 103 SYVSVIL 109 (147)
Q Consensus 103 ~~~v~~~ 109 (147)
++++|++
T Consensus 27 ~f~~G~l 33 (68)
T PF06305_consen 27 AFLLGAL 33 (68)
T ss_pred HHHHHHH
Confidence 3333333
No 61
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=82.38 E-value=3.2 Score=32.34 Aligned_cols=9 Identities=0% Similarity=-0.544 Sum_probs=3.9
Q ss_pred HHHHHHHHh
Q 046778 124 LWFYFIDRC 132 (147)
Q Consensus 124 ~~~~~~d~~ 132 (147)
+|..-+-++
T Consensus 288 kKKlQYiKL 296 (299)
T PF02009_consen 288 KKKLQYIKL 296 (299)
T ss_pred hHHHHHHHH
Confidence 444444443
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=80.39 E-value=1.7 Score=32.21 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=42.3
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCC--CCCCCccccccCCccccccccC
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLS--GPIPDKEQFATFDDRSYKGNSA 59 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~--G~iP~~~~~~~~~~~~~~gn~~ 59 (147)
+|..|+|++|+++--=|.--.-+++|..|-|.+|++. |.+-.-..+.++..+.+.||+-
T Consensus 65 rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv 125 (233)
T KOG1644|consen 65 RLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPV 125 (233)
T ss_pred ccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCch
Confidence 4788999999999766665555778999999999773 3332222456777777888853
No 63
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=80.08 E-value=0.86 Score=36.71 Aligned_cols=36 Identities=36% Similarity=0.421 Sum_probs=24.7
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCC
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSG 38 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G 38 (147)
+|+.||||+|.++.-.+ +..++.|+.|++++|.++.
T Consensus 119 ~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~ 154 (414)
T KOG0531|consen 119 NLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISD 154 (414)
T ss_pred cchheeccccccccccc--hhhccchhhheeccCcchh
Confidence 36788888888886533 4456667777777776654
No 64
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=78.72 E-value=9.4 Score=25.47 Aligned_cols=17 Identities=18% Similarity=-0.058 Sum_probs=7.9
Q ss_pred HHHHHhhhhhhHHHHHH
Q 046778 113 AALWINSYWRRLWFYFI 129 (147)
Q Consensus 113 ~~~~~~~~~r~~~~~~~ 129 (147)
...+++|.+||.-+++.
T Consensus 103 A~~LLrR~cRr~arrR~ 119 (126)
T PF03229_consen 103 AGALLRRCCRRAARRRQ 119 (126)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 33445555555444443
No 65
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=78.31 E-value=7.8 Score=22.69 Aligned_cols=39 Identities=8% Similarity=-0.199 Sum_probs=20.6
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 046778 93 MVALRWSFGASYVSVILGLFAALWINSYWRRLWFYFIDR 131 (147)
Q Consensus 93 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~r~~~~~~~d~ 131 (147)
...+.+++++|++++.++.....+-.++..++.++.+++
T Consensus 21 ~l~il~~f~~G~llg~l~~~~~~~~~r~~~~~~~k~l~~ 59 (68)
T PF06305_consen 21 GLLILIAFLLGALLGWLLSLPSRLRLRRRIRRLRKELKK 59 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677888887766555543333333333334333
No 66
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=77.90 E-value=1 Score=40.14 Aligned_cols=41 Identities=29% Similarity=0.408 Sum_probs=35.1
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCC
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~ 42 (147)
+|++|||+...++ .+|..+++|..|.+||++++.--..+|.
T Consensus 596 ~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~ 636 (889)
T KOG4658|consen 596 HLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPG 636 (889)
T ss_pred hhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccc
Confidence 4789999999999 8999999999999999999865555543
No 67
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=77.87 E-value=0.4 Score=40.53 Aligned_cols=35 Identities=37% Similarity=0.447 Sum_probs=22.5
Q ss_pred cEEECCCCcccccCchhhhcCCCCCeeecCCCcCCC
Q 046778 3 ESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSG 38 (147)
Q Consensus 3 ~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G 38 (147)
+.|.|.+|.+. .||..+.++..|.++|++.|+++-
T Consensus 101 e~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~ 135 (722)
T KOG0532|consen 101 ESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSH 135 (722)
T ss_pred HHHHHHhccce-ecchhhhhhhHHHHhhhccchhhc
Confidence 34445555554 466667777777777777777754
No 68
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=77.81 E-value=5.8 Score=30.57 Aligned_cols=36 Identities=14% Similarity=0.010 Sum_probs=13.3
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 046778 96 LRWSFGASYVSVILGLFAALWINSYWRRLWFYFIDR 131 (147)
Q Consensus 96 ~~~~~~~~~~v~~~~~~~~~~~~~~~r~~~~~~~d~ 131 (147)
++++++.|+++..++.++++...+.+|++....+++
T Consensus 215 iv~g~~~G~~~L~ll~~lv~~~vr~krk~k~~eMEr 250 (278)
T PF06697_consen 215 IVVGVVGGVVLLGLLSLLVAMLVRYKRKKKIEEMER 250 (278)
T ss_pred EEEEehHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 344434444332222223333333333334444443
No 69
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=77.42 E-value=0.74 Score=37.72 Aligned_cols=18 Identities=17% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhhHHHH
Q 046778 110 GLFAALWINSYWRRLWFY 127 (147)
Q Consensus 110 ~~~~~~~~~~~~r~~~~~ 127 (147)
++++.++.++++||+++.
T Consensus 369 ~viv~vc~~~rrrR~~~~ 386 (439)
T PF02480_consen 369 GVIVWVCLRCRRRRRQRD 386 (439)
T ss_dssp ------------------
T ss_pred HHHhheeeeehhcccccc
Confidence 333333444444444444
No 70
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=76.43 E-value=2.1 Score=31.68 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=9.9
Q ss_pred hhhhhhhhhHHHHHHHHHHHHH
Q 046778 96 LRWSFGASYVSVILGLFAALWI 117 (147)
Q Consensus 96 ~~~~~~~~~~v~~~~~~~~~~~ 117 (147)
+++++.+|++.++++++++.++
T Consensus 39 I~iaiVAG~~tVILVI~i~v~v 60 (221)
T PF08374_consen 39 IMIAIVAGIMTVILVIFIVVLV 60 (221)
T ss_pred eeeeeecchhhhHHHHHHHHHH
Confidence 3444444444444444444444
No 71
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=73.15 E-value=3.9 Score=27.61 Aligned_cols=14 Identities=14% Similarity=-0.137 Sum_probs=6.5
Q ss_pred HHHHHhhhhhhHHH
Q 046778 113 AALWINSYWRRLWF 126 (147)
Q Consensus 113 ~~~~~~~~~r~~~~ 126 (147)
+++++.+..||+.+
T Consensus 15 ~~~~~~~~~rRR~r 28 (130)
T PF12273_consen 15 FLFLFYCHNRRRRR 28 (130)
T ss_pred HHHHHHHHHHHHhh
Confidence 33445555444444
No 72
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=72.07 E-value=1.6 Score=35.77 Aligned_cols=41 Identities=39% Similarity=0.482 Sum_probs=28.1
Q ss_pred ccEEECCCCcccccCch--hhhcCCCCCeeecCCCcCCCCCCC
Q 046778 2 IESLDLSRNKLSGRIPP--QLTELNFLSNFNVSYNNLSGPIPD 42 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~--~~~~l~~L~~l~ls~N~l~G~iP~ 42 (147)
+..||||.|-|+---|. -...|++|+.||+|.|.|.-..-+
T Consensus 148 v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s 190 (505)
T KOG3207|consen 148 VRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS 190 (505)
T ss_pred ceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc
Confidence 45788888887754332 245688888888888887554443
No 73
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=69.79 E-value=12 Score=20.21 Aligned_cols=12 Identities=25% Similarity=0.393 Sum_probs=6.1
Q ss_pred HHHhhhhhhHHH
Q 046778 115 LWINSYWRRLWF 126 (147)
Q Consensus 115 ~~~~~~~r~~~~ 126 (147)
.++.++|..+.+
T Consensus 27 ~~iYRKw~aRkr 38 (43)
T PF08114_consen 27 LFIYRKWQARKR 38 (43)
T ss_pred HHHHHHHHHHHH
Confidence 345555655444
No 74
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=68.77 E-value=5.2 Score=30.89 Aligned_cols=24 Identities=13% Similarity=0.175 Sum_probs=11.8
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHH
Q 046778 94 VALRWSFGASYVSVILGLFAALWI 117 (147)
Q Consensus 94 ~~~~~~~~~~~~v~~~~~~~~~~~ 117 (147)
.++.++++++++..++++++.+++
T Consensus 228 ~VVlIslAiALG~v~ll~l~Gii~ 251 (281)
T PF12768_consen 228 FVVLISLAIALGTVFLLVLIGIIL 251 (281)
T ss_pred EEEEEehHHHHHHHHHHHHHHHHH
Confidence 344555555555555544444433
No 75
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=66.74 E-value=3.9 Score=30.04 Aligned_cols=19 Identities=26% Similarity=0.221 Sum_probs=9.6
Q ss_pred hhhhhHHHHHHHHhhhcee
Q 046778 119 SYWRRLWFYFIDRCIDTCY 137 (147)
Q Consensus 119 ~~~r~~~~~~~d~~~~~~~ 137 (147)
...||.|+..-.+..++.|
T Consensus 124 ~~~Rrs~~~~~~rl~Ee~~ 142 (202)
T PF06365_consen 124 CHQRRSWSKKGQRLGEELY 142 (202)
T ss_pred hhhhccCCcchhhhccCce
Confidence 3355556555555544443
No 76
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=66.68 E-value=1.4 Score=36.16 Aligned_cols=14 Identities=43% Similarity=0.619 Sum_probs=6.2
Q ss_pred CCCCCeeecCCCcC
Q 046778 23 LNFLSNFNVSYNNL 36 (147)
Q Consensus 23 l~~L~~l~ls~N~l 36 (147)
+..|++|||++|++
T Consensus 245 ~~~L~~LdLs~N~l 258 (505)
T KOG3207|consen 245 LQTLQELDLSNNNL 258 (505)
T ss_pred hhHHhhccccCCcc
Confidence 33444444444443
No 77
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=64.45 E-value=9.8 Score=25.65 Aligned_cols=13 Identities=8% Similarity=0.253 Sum_probs=6.0
Q ss_pred hhhhhhhhhhhHH
Q 046778 94 VALRWSFGASYVS 106 (147)
Q Consensus 94 ~~~~~~~~~~~~v 106 (147)
..+++++.+|+++
T Consensus 67 ~~Ii~gv~aGvIg 79 (122)
T PF01102_consen 67 IGIIFGVMAGVIG 79 (122)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHH
Confidence 3344445555533
No 78
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=63.58 E-value=4.7 Score=40.02 Aligned_cols=31 Identities=32% Similarity=0.282 Sum_probs=27.1
Q ss_pred ECCCCcccccCchhhhcCCCCCeeecCCCcC
Q 046778 6 DLSRNKLSGRIPPQLTELNFLSNFNVSYNNL 36 (147)
Q Consensus 6 dLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l 36 (147)
||++|+|+---+..|..|.+|+.|+|++|.+
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcc
Confidence 7999999976666788899999999999965
No 79
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=63.07 E-value=5.8 Score=26.97 Aligned_cols=32 Identities=16% Similarity=-0.054 Sum_probs=16.2
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 046778 100 FGASYVSVILGLFAALWINSYWRRLWFYFIDR 131 (147)
Q Consensus 100 ~~~~~~v~~~~~~~~~~~~~~~r~~~~~~~d~ 131 (147)
+.+++++++++...+.++.++.|++.....|.
T Consensus 105 ~il~il~~i~is~~~~~~yr~~r~~~~~~~~~ 136 (139)
T PHA03099 105 GIVLVLVGIIITCCLLSVYRFTRRTKLPLQDM 136 (139)
T ss_pred HHHHHHHHHHHHHHHHhhheeeecccCchhhc
Confidence 33444455555555555555555555444443
No 80
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=62.94 E-value=3.8 Score=34.55 Aligned_cols=57 Identities=23% Similarity=0.243 Sum_probs=32.8
Q ss_pred ccEEECCCCccccc--CchhhhcCCCCCeeecCCC--cCCC--CCCCccccccCCccccccccC
Q 046778 2 IESLDLSRNKLSGR--IPPQLTELNFLSNFNVSYN--NLSG--PIPDKEQFATFDDRSYKGNSA 59 (147)
Q Consensus 2 L~~LdLs~N~LsG~--iP~~~~~l~~L~~l~ls~N--~l~G--~iP~~~~~~~~~~~~~~gn~~ 59 (147)
+..++|++|+|--- +.+--...+.|.+|+||+| .+.- +++. +....+.++.+.||+-
T Consensus 220 i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K-~k~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 220 ILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDK-LKGLPLEELVLEGNPL 282 (585)
T ss_pred eeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhh-hcCCCHHHeeecCCcc
Confidence 56789999998742 1111223567899999999 2211 1111 1233445566778853
No 81
>PRK15386 type III secretion protein GogB; Provisional
Probab=62.91 E-value=8.6 Score=31.49 Aligned_cols=9 Identities=22% Similarity=0.416 Sum_probs=4.6
Q ss_pred ccEEECCCC
Q 046778 2 IESLDLSRN 10 (147)
Q Consensus 2 L~~LdLs~N 10 (147)
|+.|++++|
T Consensus 96 Le~L~Ls~C 104 (426)
T PRK15386 96 LEKLTVCHC 104 (426)
T ss_pred hhheEccCc
Confidence 445555554
No 82
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=62.76 E-value=4.5 Score=32.71 Aligned_cols=25 Identities=20% Similarity=0.069 Sum_probs=12.2
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHh
Q 046778 94 VALRWSFGASYVSVILGLFAALWIN 118 (147)
Q Consensus 94 ~~~~~~~~~~~~v~~~~~~~~~~~~ 118 (147)
.+..|++++.++|+-+|.++.+||.
T Consensus 368 aIaGIsvavvvvVgglvGfLcWwf~ 392 (397)
T PF03302_consen 368 AIAGISVAVVVVVGGLVGFLCWWFI 392 (397)
T ss_pred ceeeeeehhHHHHHHHHHHHhhhee
Confidence 3444445555555545555544443
No 83
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=61.73 E-value=27 Score=20.63 Aligned_cols=21 Identities=10% Similarity=0.113 Sum_probs=11.9
Q ss_pred HHHHHhhhhhhHHHHHHHHhh
Q 046778 113 AALWINSYWRRLWFYFIDRCI 133 (147)
Q Consensus 113 ~~~~~~~~~r~~~~~~~d~~~ 133 (147)
.+-+..++|.++|+..++..+
T Consensus 19 pLGyl~~~~~~r~~~~lr~~l 39 (62)
T PF11120_consen 19 PLGYLARRWLPRIRRTLRRRL 39 (62)
T ss_pred hHHHHHHHHhHHHHHHHHHHh
Confidence 333455566666666666554
No 84
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=60.34 E-value=26 Score=19.04 Aligned_cols=12 Identities=25% Similarity=0.135 Sum_probs=4.9
Q ss_pred hhhhHHHHHHHH
Q 046778 120 YWRRLWFYFIDR 131 (147)
Q Consensus 120 ~~r~~~~~~~d~ 131 (147)
+.+++.++.+.+
T Consensus 28 ~~~r~~~~~l~~ 39 (45)
T TIGR03141 28 LDRRRLLRELRR 39 (45)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 85
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=56.01 E-value=30 Score=23.74 Aligned_cols=11 Identities=27% Similarity=0.380 Sum_probs=5.4
Q ss_pred hhhhHHHHHHH
Q 046778 120 YWRRLWFYFID 130 (147)
Q Consensus 120 ~~r~~~~~~~d 130 (147)
.+|++++.++.
T Consensus 41 ~~r~~~~~~yr 51 (146)
T PF14316_consen 41 LWRRWRRNRYR 51 (146)
T ss_pred HHHHHHccHHH
Confidence 34444555554
No 86
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=55.33 E-value=33 Score=18.67 Aligned_cols=22 Identities=18% Similarity=-0.046 Sum_probs=8.6
Q ss_pred HHHHHHHHhhhhhhHHHHHHHH
Q 046778 110 GLFAALWINSYWRRLWFYFIDR 131 (147)
Q Consensus 110 ~~~~~~~~~~~~r~~~~~~~d~ 131 (147)
++++.++.....+++.++...+
T Consensus 17 ~l~~l~~~~~~~~r~~~~~l~~ 38 (46)
T PF04995_consen 17 VLAGLIVWSLRRRRRLRKELKR 38 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444443
No 87
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=54.22 E-value=13 Score=29.13 Aligned_cols=35 Identities=26% Similarity=0.448 Sum_probs=23.6
Q ss_pred ccEEECCCCcccccCchhhh----cCCCCCeeecCCCcC
Q 046778 2 IESLDLSRNKLSGRIPPQLT----ELNFLSNFNVSYNNL 36 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~----~l~~L~~l~ls~N~l 36 (147)
|+..|||.|-+.-..|+.++ ..+.|.+|-+++|-|
T Consensus 94 l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 94 LQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred ceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 56677777777777766643 456677777777654
No 88
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=53.64 E-value=8.2 Score=21.78 Aligned_cols=19 Identities=5% Similarity=-0.220 Sum_probs=11.0
Q ss_pred HHHHhhhhhhHHHHHHHHh
Q 046778 114 ALWINSYWRRLWFYFIDRC 132 (147)
Q Consensus 114 ~~~~~~~~r~~~~~~~d~~ 132 (147)
+.++...++..+++..|..
T Consensus 18 ~~I~~~~K~ygYkht~d~~ 36 (50)
T PF12606_consen 18 LSICTTLKAYGYKHTVDPL 36 (50)
T ss_pred HHHHHHhhccccccccCCC
Confidence 3334445666777777654
No 89
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=53.30 E-value=1.4 Score=34.80 Aligned_cols=44 Identities=23% Similarity=0.300 Sum_probs=33.1
Q ss_pred CccEEECCCCccccc-CchhhhcCCCCCeeecCCCcCCCCCCCcc
Q 046778 1 MIESLDLSRNKLSGR-IPPQLTELNFLSNFNVSYNNLSGPIPDKE 44 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~-iP~~~~~l~~L~~l~ls~N~l~G~iP~~~ 44 (147)
+||+||||.-.++-. .-.-+..+..|+.+.+.+++|..+|-..+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i 230 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTI 230 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHH
Confidence 478899998888754 22235667889999999999988876654
No 90
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=52.18 E-value=27 Score=25.32 Aligned_cols=21 Identities=19% Similarity=0.091 Sum_probs=9.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHH
Q 046778 97 RWSFGASYVSVILGLFAALWI 117 (147)
Q Consensus 97 ~~~~~~~~~v~~~~~~~~~~~ 117 (147)
...++.|+++.+.+..+++|.
T Consensus 160 ~~SFiGGIVL~LGv~aI~ff~ 180 (186)
T PF05283_consen 160 AASFIGGIVLTLGVLAIIFFL 180 (186)
T ss_pred hhhhhhHHHHHHHHHHHHHHH
Confidence 444444444444433344333
No 91
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=52.04 E-value=24 Score=22.03 Aligned_cols=38 Identities=11% Similarity=-0.001 Sum_probs=14.9
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHhh
Q 046778 96 LRWSFGASYVSVILGLFAALWINSYWRRLWFYFIDRCI 133 (147)
Q Consensus 96 ~~~~~~~~~~v~~~~~~~~~~~~~~~r~~~~~~~d~~~ 133 (147)
++++++..++++++.++..-+...+++++-.+.+++.-
T Consensus 10 ialiv~~iiaIvvW~iv~ieYrk~~rqrkId~li~RIr 47 (81)
T PF00558_consen 10 IALIVALIIAIVVWTIVYIEYRKIKRQRKIDRLIERIR 47 (81)
T ss_dssp HHHHHHHHHHHHHHHHH------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34444555566677776666666666666666666553
No 92
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=50.73 E-value=32 Score=22.86 Aligned_cols=11 Identities=0% Similarity=-0.372 Sum_probs=4.0
Q ss_pred hhhHHHHHHHH
Q 046778 121 WRRLWFYFIDR 131 (147)
Q Consensus 121 ~r~~~~~~~d~ 131 (147)
.+++..+...+
T Consensus 22 PQkKr~Ke~~e 32 (113)
T PRK06531 22 QQKKQAQERQN 32 (113)
T ss_pred hHHHHHHHHHH
Confidence 33333333333
No 93
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=50.37 E-value=28 Score=20.97 Aligned_cols=21 Identities=10% Similarity=0.080 Sum_probs=8.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHH
Q 046778 97 RWSFGASYVSVILGLFAALWI 117 (147)
Q Consensus 97 ~~~~~~~~~v~~~~~~~~~~~ 117 (147)
.+++..+++++++-.+.=++|
T Consensus 35 aIGvi~gi~~~~lt~ltN~YF 55 (68)
T PF04971_consen 35 AIGVIGGIFFGLLTYLTNLYF 55 (68)
T ss_pred hHHHHHHHHHHHHHHHhHhhh
Confidence 333444444444333333344
No 94
>PHA03265 envelope glycoprotein D; Provisional
Probab=49.44 E-value=15 Score=29.34 Aligned_cols=21 Identities=5% Similarity=-0.105 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHhhhhhhHHHH
Q 046778 107 VILGLFAALWINSYWRRLWFY 127 (147)
Q Consensus 107 ~~~~~~~~~~~~~~~r~~~~~ 127 (147)
|++++.++++++.++|+..++
T Consensus 360 glv~vg~il~~~~rr~k~~~k 380 (402)
T PHA03265 360 GLVLVGVILYVCLRRKKELKK 380 (402)
T ss_pred hhhhhhHHHHHHhhhhhhhhh
Confidence 344444444554444444433
No 95
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=48.55 E-value=39 Score=22.78 Aligned_cols=8 Identities=13% Similarity=0.027 Sum_probs=3.1
Q ss_pred hhHHHHHH
Q 046778 103 SYVSVILG 110 (147)
Q Consensus 103 ~~~v~~~~ 110 (147)
++++|+++
T Consensus 5 ~lvvG~ii 12 (128)
T PF06295_consen 5 GLVVGLII 12 (128)
T ss_pred HHHHHHHH
Confidence 33344333
No 96
>PF15179 Myc_target_1: Myc target protein 1
Probab=47.62 E-value=27 Score=25.30 Aligned_cols=15 Identities=20% Similarity=0.096 Sum_probs=7.2
Q ss_pred hhhhhhhhhHHHHHH
Q 046778 96 LRWSFGASYVSVILG 110 (147)
Q Consensus 96 ~~~~~~~~~~v~~~~ 110 (147)
+++++.+++++|+++
T Consensus 21 lIlaF~vSm~iGLvi 35 (197)
T PF15179_consen 21 LILAFCVSMAIGLVI 35 (197)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555555433
No 97
>PRK11677 hypothetical protein; Provisional
Probab=46.57 E-value=46 Score=22.79 Aligned_cols=13 Identities=23% Similarity=-0.079 Sum_probs=5.6
Q ss_pred hhhHHHHHHHHHH
Q 046778 102 ASYVSVILGLFAA 114 (147)
Q Consensus 102 ~~~~v~~~~~~~~ 114 (147)
+++++|+++.+++
T Consensus 8 i~livG~iiG~~~ 20 (134)
T PRK11677 8 IGLVVGIIIGAVA 20 (134)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444443333
No 98
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=46.44 E-value=50 Score=23.04 Aligned_cols=9 Identities=11% Similarity=0.069 Sum_probs=3.7
Q ss_pred hhhhHHHHH
Q 046778 120 YWRRLWFYF 128 (147)
Q Consensus 120 ~~r~~~~~~ 128 (147)
+.++++...
T Consensus 27 kl~r~Y~~l 35 (151)
T PF14584_consen 27 KLKRRYDAL 35 (151)
T ss_pred HHHHHHHHH
Confidence 334444443
No 99
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=46.15 E-value=8.1 Score=30.92 Aligned_cols=36 Identities=22% Similarity=0.238 Sum_probs=22.3
Q ss_pred CccEEECCCCcccccCchhh----hcCCCCCeeecCCCcC
Q 046778 1 MIESLDLSRNKLSGRIPPQL----TELNFLSNFNVSYNNL 36 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~----~~l~~L~~l~ls~N~l 36 (147)
+|+.||||.|-|.-.-++.+ ..+++|+.|.|.+|-+
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl 132 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGL 132 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCC
Confidence 36677777777765555443 3456677777776643
No 100
>PF15179 Myc_target_1: Myc target protein 1
Probab=44.71 E-value=32 Score=24.95 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=18.7
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHh
Q 046778 93 MVALRWSFGASYVSVILGLFAALWIN 118 (147)
Q Consensus 93 ~~~~~~~~~~~~~v~~~~~~~~~~~~ 118 (147)
...+.+.+++|+++|.++-+++.+..
T Consensus 22 IlaF~vSm~iGLviG~li~~LltwlS 47 (197)
T PF15179_consen 22 ILAFCVSMAIGLVIGALIWALLTWLS 47 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788888888877666665553
No 101
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=44.50 E-value=10 Score=28.94 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=24.2
Q ss_pred hhcCCCCCeeecCCC--cCCCCCCCcc-ccccCCccccccc
Q 046778 20 LTELNFLSNFNVSYN--NLSGPIPDKE-QFATFDDRSYKGN 57 (147)
Q Consensus 20 ~~~l~~L~~l~ls~N--~l~G~iP~~~-~~~~~~~~~~~gn 57 (147)
+..|+.|+.|.+|.| .-+|.++... ...++......||
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN 101 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence 455778899999999 4455555433 2355555555555
No 102
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=43.30 E-value=45 Score=28.33 Aligned_cols=9 Identities=22% Similarity=0.062 Sum_probs=3.7
Q ss_pred HHHHHHHHh
Q 046778 124 LWFYFIDRC 132 (147)
Q Consensus 124 ~~~~~~d~~ 132 (147)
+.++.++.+
T Consensus 26 ~~~~~i~~L 34 (569)
T PRK04778 26 RNYKRIDEL 34 (569)
T ss_pred HHHHHHHHH
Confidence 344444433
No 103
>PF07253 Gypsy: Gypsy protein; InterPro: IPR009882 This family consists of several Gypsy/Env proteins from Drosophila and Ceratitis fruit fly species. Gypsy is an endogenous retrovirus of Drosophila melanogaster. Phylogenetic studies suggest that occasional horizontal transfer events of gypsy occur between Drosophila species. Gypsy possesses infective properties associated with the products of the envelope gene that might be at the origin of these interspecies transfers [].
Probab=42.61 E-value=41 Score=27.99 Aligned_cols=35 Identities=11% Similarity=-0.013 Sum_probs=18.9
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHhhh
Q 046778 100 FGASYVSVILGLFAALWINSYWRRLWFYFIDRCID 134 (147)
Q Consensus 100 ~~~~~~v~~~~~~~~~~~~~~~r~~~~~~~d~~~~ 134 (147)
+++|+++++.++.++++++..++++..+...+..+
T Consensus 420 l~~gv~l~~~Ii~~i~~~~~~r~~r~~~~~~~~~~ 454 (472)
T PF07253_consen 420 LVFGVLLSIMIIIIIALILMLRKKRQKAQIQQSIK 454 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Confidence 44555555555555555555555555555555543
No 104
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=41.70 E-value=71 Score=20.61 Aligned_cols=15 Identities=7% Similarity=-0.132 Sum_probs=6.4
Q ss_pred hhhhHHHHHHHHhhh
Q 046778 120 YWRRLWFYFIDRCID 134 (147)
Q Consensus 120 ~~r~~~~~~~d~~~~ 134 (147)
|..++..+...+.++
T Consensus 28 RPQrKr~K~~~~ml~ 42 (97)
T COG1862 28 RPQRKRMKEHQELLN 42 (97)
T ss_pred CHHHHHHHHHHHHHH
Confidence 344444444444444
No 105
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.59 E-value=26 Score=27.86 Aligned_cols=32 Identities=28% Similarity=0.257 Sum_probs=20.3
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSY 33 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~ 33 (147)
|+.|+||.|.|+-.|-..=..+++|.++-|.+
T Consensus 99 l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNg 130 (418)
T KOG2982|consen 99 LTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNG 130 (418)
T ss_pred ceEeeccCCcCCCccccCcccccceEEEEEcC
Confidence 68899999999977643312344454444443
No 106
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=37.80 E-value=8.7 Score=25.52 Aligned_cols=8 Identities=13% Similarity=0.065 Sum_probs=0.0
Q ss_pred HHHHHHHH
Q 046778 124 LWFYFIDR 131 (147)
Q Consensus 124 ~~~~~~d~ 131 (147)
-++...|+
T Consensus 52 GYk~L~~k 59 (118)
T PF14991_consen 52 GYKTLRDK 59 (118)
T ss_dssp --------
T ss_pred hhhhhhhc
Confidence 34444443
No 107
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=36.84 E-value=68 Score=21.77 Aligned_cols=26 Identities=8% Similarity=-0.063 Sum_probs=11.9
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhh
Q 046778 95 ALRWSFGASYVSVILGLFAALWINSY 120 (147)
Q Consensus 95 ~~~~~~~~~~~v~~~~~~~~~~~~~~ 120 (147)
.+.+.+.+++...+++.+.+-+++-+
T Consensus 44 ~lYIL~vmgfFgff~~gImlsyvRSK 69 (129)
T PF02060_consen 44 YLYILVVMGFFGFFTVGIMLSYVRSK 69 (129)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555554444444444454433
No 108
>TIGR03546 conserved hypothetical protein TIGR03546. Members of this family are uncharacterized proteins, usually encoded by a gene adjacent to a member of family TIGR03545, which is also uncharacterized.
Probab=36.41 E-value=1e+02 Score=21.62 Aligned_cols=14 Identities=29% Similarity=0.180 Sum_probs=6.0
Q ss_pred hhhhHHHHHHHHHH
Q 046778 101 GASYVSVILGLFAA 114 (147)
Q Consensus 101 ~~~~~v~~~~~~~~ 114 (147)
..++++++++.+..
T Consensus 111 ~Gg~l~Gli~~~~~ 124 (154)
T TIGR03546 111 MGSFVVGLILLPPA 124 (154)
T ss_pred HhhHHHHHHHHHHH
Confidence 33444444444433
No 109
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=36.30 E-value=35 Score=29.49 Aligned_cols=15 Identities=7% Similarity=-0.053 Sum_probs=6.1
Q ss_pred hhhhhhhhhhhHHHH
Q 046778 94 VALRWSFGASYVSVI 108 (147)
Q Consensus 94 ~~~~~~~~~~~~v~~ 108 (147)
.|+++++++.+++++
T Consensus 269 lWII~gVlvPv~vV~ 283 (684)
T PF12877_consen 269 LWIIAGVLVPVLVVL 283 (684)
T ss_pred eEEEehHhHHHHHHH
Confidence 344444444443333
No 110
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=35.59 E-value=66 Score=18.17 Aligned_cols=17 Identities=35% Similarity=0.462 Sum_probs=7.6
Q ss_pred hhhhhHHHHHHHHHHHH
Q 046778 100 FGASYVSVILGLFAALW 116 (147)
Q Consensus 100 ~~~~~~v~~~~~~~~~~ 116 (147)
+.+++++++++++++++
T Consensus 8 IpiSl~l~~~~l~~f~W 24 (51)
T TIGR00847 8 IPISLLLGGVGLVAFLW 24 (51)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 111
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=35.44 E-value=12 Score=30.71 Aligned_cols=25 Identities=12% Similarity=-0.032 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHH
Q 046778 106 SVILGLFAALWINSYWRRLWFYFID 130 (147)
Q Consensus 106 v~~~~~~~~~~~~~~~r~~~~~~~d 130 (147)
++++++++++++...+++++++..+
T Consensus 362 avlivVv~viv~vc~~~rrrR~~~~ 386 (439)
T PF02480_consen 362 AVLIVVVGVIVWVCLRCRRRRRQRD 386 (439)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHhheeeeehhcccccc
Confidence 3445555666666666666666666
No 112
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=35.04 E-value=50 Score=25.64 Aligned_cols=21 Identities=24% Similarity=0.132 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHhhhhhhHHHH
Q 046778 107 VILGLFAALWINSYWRRLWFY 127 (147)
Q Consensus 107 ~~~~~~~~~~~~~~~r~~~~~ 127 (147)
+++++++++++...|-.++|+
T Consensus 267 vllil~vvliiLYiWlyrrRK 287 (295)
T TIGR01478 267 VLIILTVVLIILYIWLYRRRK 287 (295)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 344555556666777555443
No 113
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=33.77 E-value=89 Score=25.18 Aligned_cols=18 Identities=0% Similarity=-0.210 Sum_probs=7.7
Q ss_pred hhhHHHHHHHHHHHHHhh
Q 046778 102 ASYVSVILGLFAALWINS 119 (147)
Q Consensus 102 ~~~~v~~~~~~~~~~~~~ 119 (147)
.+.++|+++.+++++++.
T Consensus 344 l~~llG~~lg~~~vL~r~ 361 (377)
T PRK10381 344 LAALIGGMLACGFVLLRH 361 (377)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 114
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=32.95 E-value=14 Score=26.07 Aligned_cols=17 Identities=12% Similarity=0.145 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHH
Q 046778 101 GASYVSVILGLFAALWI 117 (147)
Q Consensus 101 ~~~~~v~~~~~~~~~~~ 117 (147)
++-+++++++.+++++.
T Consensus 137 GVLlaIG~igGIIivvv 153 (162)
T PF05808_consen 137 GVLLAIGFIGGIIIVVV 153 (162)
T ss_dssp -----------------
T ss_pred hHHHHHHHHhheeeEEe
Confidence 33333344444444333
No 115
>TIGR03546 conserved hypothetical protein TIGR03546. Members of this family are uncharacterized proteins, usually encoded by a gene adjacent to a member of family TIGR03545, which is also uncharacterized.
Probab=32.66 E-value=1.3e+02 Score=21.00 Aligned_cols=36 Identities=11% Similarity=0.094 Sum_probs=19.2
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 046778 95 ALRWSFGASYVSVILGLFAALWINSYWRRLWFYFID 130 (147)
Q Consensus 95 ~~~~~~~~~~~v~~~~~~~~~~~~~~~r~~~~~~~d 130 (147)
.+..++..|++.++.+-.+...+.+++|++...+++
T Consensus 109 l~~Gg~l~Gli~~~~~Y~ls~~lI~~Yr~~~~~~~~ 144 (154)
T TIGR03546 109 IVMGSFVVGLILLPPAFAISKVIIAKYRKRIVAWVN 144 (154)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666665555555544444444444333
No 116
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=32.53 E-value=78 Score=17.32 Aligned_cols=17 Identities=29% Similarity=0.501 Sum_probs=7.1
Q ss_pred hhhhhHHHHHHHHHHHH
Q 046778 100 FGASYVSVILGLFAALW 116 (147)
Q Consensus 100 ~~~~~~v~~~~~~~~~~ 116 (147)
+.++++++++++.++++
T Consensus 7 ip~sl~l~~~~l~~f~W 23 (45)
T PF03597_consen 7 IPVSLILGLIALAAFLW 23 (45)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444333
No 117
>PF02158 Neuregulin: Neuregulin family; InterPro: IPR002154 Neuregulins are a sub-family of EGF-like molecules that have been shown to play multiple essential roles in vertebrate embryogenesis including: cardiac development, Schwann cell and oligodendrocyte differentiation, some aspects of neuronal development, as well as the formation of neuromuscular synapses [, ]. Included in the family are heregulin; neu differentiation factor; acetylcholine receptor synthesis stimulator; glial growth factor; and sensory and motor-neuron derived factor []. Multiple family members are generated by alternate splicing or by use of several cell type-specific transcription initiation sites. In general, they bind to and activate the erbB family of receptor tyrosine kinases (erbB2 (HER2), erbB3 (HER3), and erbB4 (HER4)), functioning both as heterodimers and homodimers. The transmembrane forms of neuregulin 1 (NRG1) are present within synaptic vesicles, including those containing glutamate []. After exocytosis, NRG1 is in the presynaptic membrane, where the ectodomain of NRG1 may be cleaved off. The ectodomain then migrates across the synaptic cleft and binds to and activates a member of the EGF-receptor family on the postsynaptic membrane. This has been shown to increase the expression of certain glutamate-receptor subunits. NRG1 appears to signal for glutamate-receptor subunit expression, localisation, and /or phosphorylation facilitating subsequent glutamate transmission. The NRG1 gene has been identified as a potential gene determining susceptibility to schizophrenia by a combination of genetic linkage and association approaches []. ; GO: 0005102 receptor binding, 0009790 embryo development; PDB: 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=31.74 E-value=16 Score=29.54 Aligned_cols=23 Identities=9% Similarity=0.208 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHH-HHhhhhhh
Q 046778 101 GASYVSVILGLFAAL-WINSYWRR 123 (147)
Q Consensus 101 ~~~~~v~~~~~~~~~-~~~~~~r~ 123 (147)
+|++++.++.+++++ ++++.+|.
T Consensus 14 gIcvaLlVVGi~Cvv~aYCKTKKQ 37 (404)
T PF02158_consen 14 GICVALLVVGIVCVVDAYCKTKKQ 37 (404)
T ss_dssp ------------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHhHHH
Confidence 334444444444554 44444433
No 118
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=31.17 E-value=1e+02 Score=17.12 Aligned_cols=20 Identities=5% Similarity=0.215 Sum_probs=11.4
Q ss_pred hhhhhhhHHHHHHHHHHHHH
Q 046778 98 WSFGASYVSVILGLFAALWI 117 (147)
Q Consensus 98 ~~~~~~~~v~~~~~~~~~~~ 117 (147)
+.++.++++++.+.+++.++
T Consensus 9 L~~~F~~lIC~Fl~~~~~F~ 28 (54)
T PF06716_consen 9 LLLAFGFLICLFLFCLVVFI 28 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556666666555555444
No 119
>PTZ00370 STEVOR; Provisional
Probab=30.72 E-value=75 Score=24.76 Aligned_cols=10 Identities=20% Similarity=0.268 Sum_probs=3.8
Q ss_pred HHHHhhhhhh
Q 046778 114 ALWINSYWRR 123 (147)
Q Consensus 114 ~~~~~~~~r~ 123 (147)
++++.+.+||
T Consensus 272 iilYiwlyrr 281 (296)
T PTZ00370 272 IILYIWLYRR 281 (296)
T ss_pred HHHHHHHHHh
Confidence 3333333333
No 120
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=30.09 E-value=74 Score=19.33 Aligned_cols=18 Identities=0% Similarity=-0.022 Sum_probs=8.6
Q ss_pred hhhhhHHHHHHHHHHHHH
Q 046778 100 FGASYVSVILGLFAALWI 117 (147)
Q Consensus 100 ~~~~~~v~~~~~~~~~~~ 117 (147)
+++++++|+++.++++++
T Consensus 62 l~l~~~~Gl~lgi~~~~~ 79 (82)
T PF13807_consen 62 LALGLFLGLILGIGLAFL 79 (82)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444555555555444
No 121
>PF13120 DUF3974: Domain of unknown function (DUF3974)
Probab=29.87 E-value=21 Score=23.08 Aligned_cols=20 Identities=5% Similarity=0.079 Sum_probs=11.8
Q ss_pred hhhhhHHHHHHHHHHHHHhh
Q 046778 100 FGASYVSVILGLFAALWINS 119 (147)
Q Consensus 100 ~~~~~~v~~~~~~~~~~~~~ 119 (147)
++.-+.+++.++++++++-+
T Consensus 11 ~g~llligftivvl~vyfgr 30 (126)
T PF13120_consen 11 IGTLLLIGFTIVVLLVYFGR 30 (126)
T ss_pred HHHHHHHHHHHHhhhheecc
Confidence 34455566666666666543
No 122
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=29.84 E-value=17 Score=27.95 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHhhhh
Q 046778 100 FGASYVSVILGLFAALWINSYW 121 (147)
Q Consensus 100 ~~~~~~v~~~~~~~~~~~~~~~ 121 (147)
++.+++++++++..++|++++|
T Consensus 231 LVPSiILVLLaVGGLLfYr~rr 252 (285)
T PF05337_consen 231 LVPSIILVLLAVGGLLFYRRRR 252 (285)
T ss_dssp ----------------------
T ss_pred cccchhhhhhhccceeeecccc
Confidence 3445555555555565554443
No 123
>PHA03291 envelope glycoprotein I; Provisional
Probab=28.57 E-value=21 Score=28.51 Aligned_cols=30 Identities=17% Similarity=0.140 Sum_probs=16.4
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhhhhhH
Q 046778 95 ALRWSFGASYVSVILGLFAALWINSYWRRL 124 (147)
Q Consensus 95 ~~~~~~~~~~~v~~~~~~~~~~~~~~~r~~ 124 (147)
++-+++-+++++++++.-+++++.+++||+
T Consensus 288 iiQiAIPasii~cV~lGSC~Ccl~R~~rRr 317 (401)
T PHA03291 288 IIQIAIPASIIACVFLGSCACCLHRRCRRR 317 (401)
T ss_pred hheeccchHHHHHhhhhhhhhhhhhhhhcc
Confidence 445555666666655555555555544443
No 124
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.53 E-value=1.5e+02 Score=20.24 Aligned_cols=16 Identities=13% Similarity=-0.321 Sum_probs=7.4
Q ss_pred hhhhhHHHHHHHHHHH
Q 046778 100 FGASYVSVILGLFAAL 115 (147)
Q Consensus 100 ~~~~~~v~~~~~~~~~ 115 (147)
.++|+++|+++.+++.
T Consensus 11 a~igLvvGi~IG~li~ 26 (138)
T COG3105 11 ALIGLVVGIIIGALIA 26 (138)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555544444443
No 125
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=28.48 E-value=33 Score=34.60 Aligned_cols=36 Identities=17% Similarity=0.257 Sum_probs=26.7
Q ss_pred ecCCCcCCCCCCCcc-ccccCCccccccccCCcCCCC
Q 046778 30 NVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCGSMI 65 (147)
Q Consensus 30 ~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg~~~ 65 (147)
||++|+|+---+..+ .+.++..+.+.||+.-|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L 37 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGL 37 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccccccc
Confidence 789999985444333 456778888999999998754
No 126
>PRK15386 type III secretion protein GogB; Provisional
Probab=28.20 E-value=57 Score=26.83 Aligned_cols=20 Identities=15% Similarity=0.155 Sum_probs=10.4
Q ss_pred CCCCeeecCCCcCCCCCCCc
Q 046778 24 NFLSNFNVSYNNLSGPIPDK 43 (147)
Q Consensus 24 ~~L~~l~ls~N~l~G~iP~~ 43 (147)
.+|+.|++++|..-..+|.+
T Consensus 94 ~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 94 EGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred hhhhheEccCcccccccccc
Confidence 35667777766222234543
No 127
>PF10808 DUF2542: Protein of unknown function (DUF2542) ; InterPro: IPR020155 This entry represents transmembrane proteins with no known function.; GO: 0016021 integral to membrane
Probab=27.55 E-value=1.5e+02 Score=18.25 Aligned_cols=24 Identities=8% Similarity=0.250 Sum_probs=16.2
Q ss_pred HHHHHhhhhhhHHHHHHHHhhhce
Q 046778 113 AALWINSYWRRLWFYFIDRCIDTC 136 (147)
Q Consensus 113 ~~~~~~~~~r~~~~~~~d~~~~~~ 136 (147)
.++.++-.||-+.--.+||.+.+.
T Consensus 16 ~~f~fREa~KgwRsGaVdK~vkna 39 (79)
T PF10808_consen 16 PLFCFREAWKGWRSGAVDKIVKNA 39 (79)
T ss_pred HHHHHHHHHHHHhhcchHHHhcCC
Confidence 344567777777777888876643
No 128
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=27.35 E-value=23 Score=21.95 Aligned_cols=12 Identities=8% Similarity=0.202 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 046778 106 SVILGLFAALWI 117 (147)
Q Consensus 106 v~~~~~~~~~~~ 117 (147)
+.++++..++++
T Consensus 46 lTLLIv~~vy~c 57 (79)
T PF07213_consen 46 LTLLIVLVVYYC 57 (79)
T ss_pred HHHHHHHHHHhh
Confidence 334443344333
No 129
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=27.05 E-value=30 Score=27.77 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=19.1
Q ss_pred ccEEECCCCccccc----CchhhhcCCCCCeeecCCCcCCC
Q 046778 2 IESLDLSRNKLSGR----IPPQLTELNFLSNFNVSYNNLSG 38 (147)
Q Consensus 2 L~~LdLs~N~LsG~----iP~~~~~l~~L~~l~ls~N~l~G 38 (147)
|+.+.+++|...-+ +-..+..++.|+.|||.+|-|+-
T Consensus 187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~ 227 (382)
T KOG1909|consen 187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTL 227 (382)
T ss_pred cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhh
Confidence 34445555544321 12234556667777777776643
No 130
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=26.80 E-value=1.9e+02 Score=18.87 Aligned_cols=12 Identities=25% Similarity=0.501 Sum_probs=5.6
Q ss_pred hhhhhhhhHHHH
Q 046778 97 RWSFGASYVSVI 108 (147)
Q Consensus 97 ~~~~~~~~~v~~ 108 (147)
.+.+.+|++++.
T Consensus 16 sW~~LVGVv~~a 27 (102)
T PF15176_consen 16 SWPFLVGVVVTA 27 (102)
T ss_pred ccHhHHHHHHHH
Confidence 344555554443
No 131
>PF14851 FAM176: FAM176 family
Probab=26.77 E-value=57 Score=22.90 Aligned_cols=6 Identities=33% Similarity=0.373 Sum_probs=2.2
Q ss_pred HHHHHH
Q 046778 112 FAALWI 117 (147)
Q Consensus 112 ~~~~~~ 117 (147)
++++.+
T Consensus 38 LcllV~ 43 (153)
T PF14851_consen 38 LCLLVI 43 (153)
T ss_pred HHHHHh
Confidence 333333
No 132
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=26.75 E-value=1.9e+02 Score=19.29 Aligned_cols=21 Identities=19% Similarity=0.115 Sum_probs=11.5
Q ss_pred HHHHhhhhhhHHHHHHHHhhh
Q 046778 114 ALWINSYWRRLWFYFIDRCID 134 (147)
Q Consensus 114 ~~~~~~~~r~~~~~~~d~~~~ 134 (147)
...++++.|+..+..+.+..+
T Consensus 83 ~we~Cr~~r~~~~~~~~~~~e 103 (118)
T PF12597_consen 83 SWEYCRYNRRKERQQMKRAVE 103 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555556656666655544
No 133
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=25.99 E-value=87 Score=23.61 Aligned_cols=7 Identities=0% Similarity=-0.035 Sum_probs=2.6
Q ss_pred hhhhhHH
Q 046778 100 FGASYVS 106 (147)
Q Consensus 100 ~~~~~~v 106 (147)
+.+++++
T Consensus 193 vvIaliV 199 (259)
T PF07010_consen 193 VVIALIV 199 (259)
T ss_pred HHHHHHH
Confidence 3333333
No 134
>PRK14762 membrane protein; Provisional
Probab=25.88 E-value=90 Score=14.88 Aligned_cols=13 Identities=8% Similarity=-0.049 Sum_probs=5.5
Q ss_pred hhhhhHHHHHHHH
Q 046778 100 FGASYVSVILGLF 112 (147)
Q Consensus 100 ~~~~~~v~~~~~~ 112 (147)
+++.+.++++++.
T Consensus 8 i~iifligllvvt 20 (27)
T PRK14762 8 VLIIFLIGLLVVT 20 (27)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 135
>TIGR03493 cellullose_BcsF celllulose biosynthesis operon protein BcsF/YhjT. Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process. Members average about 63 amino acids in length and are not uncharacterized. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=25.39 E-value=1.5e+02 Score=17.41 Aligned_cols=17 Identities=6% Similarity=-0.181 Sum_probs=7.6
Q ss_pred HHhhhhhhHHHHHHHHh
Q 046778 116 WINSYWRRLWFYFIDRC 132 (147)
Q Consensus 116 ~~~~~~r~~~~~~~d~~ 132 (147)
+..+++-++|+..+...
T Consensus 22 yl~~r~~~r~r~~~r~~ 38 (62)
T TIGR03493 22 YLARRSLRRIRTTLRLR 38 (62)
T ss_pred HHHHhhhHHHHHHHHHh
Confidence 33444444555444433
No 136
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=24.87 E-value=1e+02 Score=24.83 Aligned_cols=29 Identities=3% Similarity=-0.248 Sum_probs=19.1
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHhhh
Q 046778 92 DMVALRWSFGASYVSVILGLFAALWINSY 120 (147)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 120 (147)
...+++++..+|.++|..++++-.+++++
T Consensus 338 r~lIlvl~~llG~~lg~~~vL~r~~~r~~ 366 (377)
T PRK10381 338 KALIVILAALIGGMLACGFVLLRHAMRSR 366 (377)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777888877666665555554
No 137
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=24.63 E-value=91 Score=21.70 Aligned_cols=10 Identities=0% Similarity=0.238 Sum_probs=3.8
Q ss_pred HHhhhhhhHH
Q 046778 116 WINSYWRRLW 125 (147)
Q Consensus 116 ~~~~~~r~~~ 125 (147)
+++.|..-||
T Consensus 37 Y~r~r~~tKy 46 (149)
T PF11694_consen 37 YLRNRLDTKY 46 (149)
T ss_pred HHHhcCcchh
Confidence 3333333333
No 138
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=24.55 E-value=1.3e+02 Score=25.67 Aligned_cols=15 Identities=7% Similarity=0.423 Sum_probs=6.0
Q ss_pred hhHHHHHHHHHHHHH
Q 046778 103 SYVSVILGLFAALWI 117 (147)
Q Consensus 103 ~~~v~~~~~~~~~~~ 117 (147)
++++.+++++++.++
T Consensus 7 ~llVilv~~~~~g~~ 21 (570)
T COG4477 7 ALLVILVAAYAVGYL 21 (570)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333434333444344
No 139
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=24.42 E-value=54 Score=29.14 Aligned_cols=14 Identities=0% Similarity=0.005 Sum_probs=5.1
Q ss_pred hhhhhhhhhhHHHH
Q 046778 95 ALRWSFGASYVSVI 108 (147)
Q Consensus 95 ~~~~~~~~~~~v~~ 108 (147)
++..++..++++++
T Consensus 273 ~fLl~ILG~~~liv 286 (807)
T PF10577_consen 273 VFLLAILGGTALIV 286 (807)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 140
>PF14986 DUF4514: Domain of unknown function (DUF4514)
Probab=23.80 E-value=1.2e+02 Score=17.31 Aligned_cols=12 Identities=0% Similarity=-0.310 Sum_probs=5.2
Q ss_pred hhhhhhhhhHHH
Q 046778 96 LRWSFGASYVSV 107 (147)
Q Consensus 96 ~~~~~~~~~~v~ 107 (147)
.+++.+.++++.
T Consensus 23 a~IGtalGvais 34 (61)
T PF14986_consen 23 AIIGTALGVAIS 34 (61)
T ss_pred eeehhHHHHHHH
Confidence 344444444443
No 141
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.48 E-value=1e+02 Score=23.61 Aligned_cols=11 Identities=18% Similarity=0.220 Sum_probs=4.6
Q ss_pred HHHHHHHHHHh
Q 046778 108 ILGLFAALWIN 118 (147)
Q Consensus 108 ~~~~~~~~~~~ 118 (147)
+++++++++++
T Consensus 13 llV~~i~l~l~ 23 (299)
T KOG3054|consen 13 LLVAVILLFLW 23 (299)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 142
>COG3765 WzzB Chain length determinant protein [Cell envelope biogenesis, outer membrane]
Probab=23.20 E-value=1.6e+02 Score=23.56 Aligned_cols=12 Identities=0% Similarity=-0.476 Sum_probs=4.7
Q ss_pred hhHHHHHHHHHH
Q 046778 103 SYVSVILGLFAA 114 (147)
Q Consensus 103 ~~~v~~~~~~~~ 114 (147)
++++|.++.+.+
T Consensus 323 ~~LiGgm~g~g~ 334 (347)
T COG3765 323 GALIGGMLGAGV 334 (347)
T ss_pred HHHHHHHHHHHH
Confidence 333444333333
No 143
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=22.89 E-value=1.3e+02 Score=18.03 Aligned_cols=9 Identities=0% Similarity=-0.322 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 046778 106 SVILGLFAA 114 (147)
Q Consensus 106 v~~~~~~~~ 114 (147)
+++++++++
T Consensus 10 ICVaii~lI 18 (68)
T PF05961_consen 10 ICVAIIGLI 18 (68)
T ss_pred HHHHHHHHH
Confidence 333333333
No 144
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=22.78 E-value=1.1e+02 Score=25.24 Aligned_cols=22 Identities=5% Similarity=0.190 Sum_probs=11.9
Q ss_pred hhhhhhhhhHHHHHHHHHHHHH
Q 046778 96 LRWSFGASYVSVILGLFAALWI 117 (147)
Q Consensus 96 ~~~~~~~~~~v~~~~~~~~~~~ 117 (147)
...++.+++++++++..+.+++
T Consensus 66 haagFfvaflvslVL~~l~~f~ 87 (429)
T PF12297_consen 66 HAAGFFVAFLVSLVLTWLCFFL 87 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666665554444443
No 145
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=21.90 E-value=68 Score=14.73 Aligned_cols=11 Identities=18% Similarity=0.096 Sum_probs=7.5
Q ss_pred CCCCeeecCCC
Q 046778 24 NFLSNFNVSYN 34 (147)
Q Consensus 24 ~~L~~l~ls~N 34 (147)
+.|+.|++++.
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 46777777765
No 146
>PF04367 DUF502: Protein of unknown function (DUF502); InterPro: IPR007462 This entry contains proteins that are predicted to be integral membrane proteins.
Probab=21.85 E-value=2.3e+02 Score=18.22 Aligned_cols=12 Identities=8% Similarity=0.498 Sum_probs=5.1
Q ss_pred hHHHHHHHHhhh
Q 046778 123 RLWFYFIDRCID 134 (147)
Q Consensus 123 ~~~~~~~d~~~~ 134 (147)
++..+..|+.+.
T Consensus 21 ~~l~~~~e~ll~ 32 (108)
T PF04367_consen 21 KWLLNWLERLLQ 32 (108)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 147
>PLN03155 cytochrome c oxidase subunit 5C; Provisional
Probab=21.84 E-value=1.8e+02 Score=17.05 Aligned_cols=8 Identities=0% Similarity=-0.205 Sum_probs=3.2
Q ss_pred hhhhHHHH
Q 046778 101 GASYVSVI 108 (147)
Q Consensus 101 ~~~~~v~~ 108 (147)
++++.+++
T Consensus 21 ~iG~~LGL 28 (63)
T PLN03155 21 CIGLTLGL 28 (63)
T ss_pred HHHhHHHH
Confidence 33444443
No 148
>PHA03105 EEV glycoprotein; Provisional
Probab=21.65 E-value=93 Score=22.06 Aligned_cols=18 Identities=6% Similarity=-0.022 Sum_probs=9.0
Q ss_pred hhhhhHHHHHHHHHHHHH
Q 046778 100 FGASYVSVILGLFAALWI 117 (147)
Q Consensus 100 ~~~~~~v~~~~~~~~~~~ 117 (147)
+.+++.+.++++++.+++
T Consensus 7 ~Y~vv~~SfiiLi~Yll~ 24 (188)
T PHA03105 7 VYVVVPLSFIVLILYIFF 24 (188)
T ss_pred EeeehHHHHHHHHHHHHH
Confidence 344555555555554444
No 149
>PF02430 AMA-1: Apical membrane antigen 1; InterPro: IPR003298 A novel antigen of Plasmodium falciparum has been cloned that contains a hydrophobic domain typical of an integral membrane protein. The antigen is designated apical membrane antigen 1 (AMA-1) by virtue of appearing to be located in the apical complex []. AMA-1 appears to be transported to the merozoite surface close to the time of schizont rupture. The 66kDa merozoite surface antigen (PK66) of Plasmodium knowlesi, a simian malaria, possesses vaccine-related properties believed to originate from a receptor-like role in parasite invasion of erythrocytes []. The sequence of PK66 is conserved throughout plasmodium, and shows high similarity to P. falciparum AMA-1. Following schizont rupture, the distribution of PK66 changes in a coordinate manner associated with merozoite invasion. Prior to rupture, the protein is concentrated at the apical end, following which it distributes itself entirely across the surface of the free merozoite. Immunofluorescence studies suggest that, during invasion, PK66 is excluded from the erythrocyte at, and behind, the invasion interface []. ; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2Y8R_D 2X2Z_A 2Y8T_A 2Y8S_D 1HN6_A 2Z8V_B 2Z8W_A 1Z40_E 2Q8B_A 2Q8A_A ....
Probab=21.45 E-value=31 Score=28.51 Aligned_cols=21 Identities=19% Similarity=0.420 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHhhhhhh
Q 046778 103 SYVSVILGLFAALWINSYWRR 123 (147)
Q Consensus 103 ~~~v~~~~~~~~~~~~~~~r~ 123 (147)
+.+++++++++..++++.|+.
T Consensus 437 ~~~~~~~~l~~~~~~k~~~~~ 457 (471)
T PF02430_consen 437 ATGAVLLALAIYWYYKRLWKT 457 (471)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHhhhhcc
Confidence 333334444444445444544
No 150
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=21.29 E-value=1.3e+02 Score=21.54 Aligned_cols=8 Identities=13% Similarity=-0.114 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 046778 110 GLFAALWI 117 (147)
Q Consensus 110 ~~~~~~~~ 117 (147)
+.++.-||
T Consensus 129 vGAvsSyi 136 (169)
T PF12301_consen 129 VGAVSSYI 136 (169)
T ss_pred HHHHHHHH
Confidence 33333344
No 151
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=21.28 E-value=1.1e+02 Score=22.87 Aligned_cols=24 Identities=8% Similarity=-0.092 Sum_probs=9.6
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHH
Q 046778 94 VALRWSFGASYVSVILGLFAALWI 117 (147)
Q Consensus 94 ~~~~~~~~~~~~v~~~~~~~~~~~ 117 (147)
.+.+++.++++++++++++++-++
T Consensus 40 ~iaiVAG~~tVILVI~i~v~vR~C 63 (221)
T PF08374_consen 40 MIAIVAGIMTVILVIFIVVLVRYC 63 (221)
T ss_pred eeeeecchhhhHHHHHHHHHHHHH
Confidence 333333333444444444444433
No 152
>PF04418 DUF543: Domain of unknown function (DUF543); InterPro: IPR007512 This family of short eukaryotic proteins has no known function. Most of the members of this family are only 80 amino acid residues long. However the Arabidopsis homologue is over 300 residues long. These proteins contain a conserved N-terminal cysteine and a conserved motif GXGXGXG in the carboxy terminal half that may be functionally important.
Probab=21.27 E-value=1.6e+02 Score=17.95 Aligned_cols=8 Identities=25% Similarity=0.650 Sum_probs=3.4
Q ss_pred HHHHHHhh
Q 046778 112 FAALWINS 119 (147)
Q Consensus 112 ~~~~~~~~ 119 (147)
+.++++++
T Consensus 43 ~s~l~frr 50 (75)
T PF04418_consen 43 FSLLFFRR 50 (75)
T ss_pred HHHHHHcc
Confidence 33444533
No 153
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=21.22 E-value=1.1e+02 Score=17.82 Aligned_cols=18 Identities=33% Similarity=0.396 Sum_probs=8.1
Q ss_pred hhhhhHHHHHHHHHHHHH
Q 046778 100 FGASYVSVILGLFAALWI 117 (147)
Q Consensus 100 ~~~~~~v~~~~~~~~~~~ 117 (147)
+.++++++++++.++++-
T Consensus 8 ipvsi~l~~v~l~~flWa 25 (58)
T COG3197 8 IPVSILLGAVGLGAFLWA 25 (58)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344444444444444443
No 154
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=20.80 E-value=83 Score=21.94 Aligned_cols=16 Identities=19% Similarity=0.353 Sum_probs=6.6
Q ss_pred hhhhhhhHHHHHHHHH
Q 046778 98 WSFGASYVSVILGLFA 113 (147)
Q Consensus 98 ~~~~~~~~v~~~~~~~ 113 (147)
+++++.+++++++.++
T Consensus 66 IVfgiVfimgvva~i~ 81 (155)
T PF10873_consen 66 IVFGIVFIMGVVAGIA 81 (155)
T ss_pred eehhhHHHHHHHHHHH
Confidence 3344444444443333
No 155
>PTZ00473 Plasmodium Vir superfamily; Provisional
Probab=20.79 E-value=1.2e+02 Score=24.88 Aligned_cols=7 Identities=43% Similarity=0.705 Sum_probs=2.7
Q ss_pred hhhhHHH
Q 046778 120 YWRRLWF 126 (147)
Q Consensus 120 ~~r~~~~ 126 (147)
+|||+|+
T Consensus 302 r~rr~Wr 308 (420)
T PTZ00473 302 RRRRRWR 308 (420)
T ss_pred HHHHHHh
Confidence 3334443
No 156
>PF02937 COX6C: Cytochrome c oxidase subunit VIc; InterPro: IPR004204 Cytochrome c oxidase, a 13 subunit complex, 1.9.3.1 from EC is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit VIc.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG4_I 2DYS_V 3ASO_I 2EIK_V 2EIM_I 1OCC_V 1V54_V 1OCO_V 3ASN_V 2EIL_I ....
Probab=20.19 E-value=2.2e+02 Score=17.28 Aligned_cols=7 Identities=14% Similarity=0.449 Sum_probs=2.7
Q ss_pred hhhHHHH
Q 046778 102 ASYVSVI 108 (147)
Q Consensus 102 ~~~~v~~ 108 (147)
+++++++
T Consensus 23 ~a~~ls~ 29 (73)
T PF02937_consen 23 VAFVLSL 29 (73)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333433
Done!