Query 046778
Match_columns 147
No_of_seqs 177 out of 2145
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 07:08:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046778.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046778hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 99.5 5.2E-15 1.8E-19 124.8 5.7 73 1-74 681-753 (768)
2 1ogq_A PGIP-2, polygalacturona 99.2 1.4E-11 4.9E-16 93.7 5.3 68 1-69 245-312 (313)
3 3rgz_A Protein brassinosteroid 99.0 6.2E-10 2.1E-14 93.9 6.2 57 2-58 658-715 (768)
4 3j0a_A TOLL-like receptor 5; m 98.9 1.5E-09 5E-14 92.5 6.9 59 2-64 506-564 (844)
5 1w8a_A SLIT protein; signaling 98.8 7.6E-09 2.6E-13 73.3 4.9 61 2-62 80-141 (192)
6 3g39_A Variable lymphocyte rec 98.7 2.1E-08 7.3E-13 69.7 6.1 61 2-62 56-117 (170)
7 2ifg_A High affinity nerve gro 98.7 2.3E-08 7.9E-13 76.4 6.2 63 1-63 57-119 (347)
8 2v70_A SLIT-2, SLIT homolog 2 98.7 2E-08 6.9E-13 72.6 5.3 62 2-63 107-169 (220)
9 2r9u_A Variable lymphocyte rec 98.6 5.5E-08 1.9E-12 68.0 6.0 57 1-57 34-91 (174)
10 4g8a_A TOLL-like receptor 4; l 98.6 5.5E-08 1.9E-12 79.0 6.1 64 1-64 519-584 (635)
11 2wfh_A SLIT homolog 2 protein 98.6 6.3E-08 2.2E-12 68.7 5.3 62 2-63 80-142 (193)
12 2v9t_B SLIT homolog 2 protein 98.6 8E-08 2.8E-12 69.4 5.5 62 2-63 106-168 (220)
13 1w8a_A SLIT protein; signaling 98.5 1E-07 3.5E-12 67.4 4.9 56 2-57 56-112 (192)
14 3e6j_A Variable lymphocyte rec 98.5 1.7E-07 5.8E-12 68.0 6.2 61 2-63 114-175 (229)
15 2r9u_A Variable lymphocyte rec 98.5 1.8E-07 6.2E-12 65.3 5.7 63 1-63 58-121 (174)
16 3g39_A Variable lymphocyte rec 98.5 2E-07 6.9E-12 64.8 5.7 58 1-58 31-89 (170)
17 4fcg_A Uncharacterized protein 98.5 2.1E-07 7.3E-12 71.0 6.2 55 2-57 208-263 (328)
18 2o6r_A Variable lymphocyte rec 98.5 1.7E-07 5.9E-12 65.1 5.2 57 1-57 53-110 (177)
19 1ogq_A PGIP-2, polygalacturona 98.5 9.2E-08 3.2E-12 72.5 3.7 40 3-42 104-143 (313)
20 3rfs_A Internalin B, repeat mo 98.4 3.7E-07 1.2E-11 67.7 6.4 62 2-63 159-221 (272)
21 3m19_A Variable lymphocyte rec 98.4 3.4E-07 1.2E-11 67.1 6.0 61 2-62 133-194 (251)
22 2ifg_A High affinity nerve gro 98.4 1.9E-07 6.4E-12 71.3 4.8 58 1-58 32-91 (347)
23 2o6s_A Variable lymphocyte rec 98.4 6E-07 2.1E-11 63.8 6.4 40 2-41 78-117 (208)
24 2wfh_A SLIT homolog 2 protein 98.4 4.5E-07 1.5E-11 64.3 5.5 55 2-57 33-88 (193)
25 2v70_A SLIT-2, SLIT homolog 2 98.4 5.2E-07 1.8E-11 65.1 5.7 56 2-57 59-115 (220)
26 3v47_A TOLL-like receptor 5B a 98.4 5.7E-07 2E-11 70.7 6.4 63 2-64 349-412 (455)
27 4fcg_A Uncharacterized protein 98.4 5.4E-07 1.8E-11 68.8 5.7 64 1-64 230-294 (328)
28 2z63_A TOLL-like receptor 4, v 98.3 6.7E-07 2.3E-11 72.1 6.4 61 2-62 472-533 (570)
29 2je0_A Acidic leucine-rich nuc 98.3 2.2E-07 7.6E-12 62.7 2.7 56 1-58 43-99 (149)
30 4eco_A Uncharacterized protein 98.3 3.7E-07 1.3E-11 75.5 4.4 62 1-62 207-288 (636)
31 3vq2_A TLR4, TOLL-like recepto 98.3 5.5E-07 1.9E-11 73.3 5.2 62 2-64 499-562 (606)
32 1ozn_A Reticulon 4 receptor; N 98.3 3.8E-07 1.3E-11 67.8 3.7 62 2-63 179-241 (285)
33 3oja_A Leucine-rich immune mol 98.3 3.9E-07 1.3E-11 73.2 3.7 61 1-63 192-253 (487)
34 2z81_A CD282 antigen, TOLL-lik 98.3 7.5E-07 2.6E-11 71.6 5.2 62 1-64 452-514 (549)
35 3t6q_A CD180 antigen; protein- 98.3 5.2E-07 1.8E-11 73.5 4.1 61 2-63 502-563 (606)
36 3rw6_A Nuclear RNA export fact 98.3 7.6E-07 2.6E-11 66.7 4.7 59 1-62 171-234 (267)
37 3zyi_A Leucine-rich repeat-con 98.3 1.2E-06 4.3E-11 69.2 6.0 63 2-64 244-307 (452)
38 3zyj_A Leucine-rich repeat-con 98.3 1.2E-06 4E-11 69.1 5.8 62 2-63 233-295 (440)
39 1dce_A Protein (RAB geranylger 98.3 1.2E-06 4.1E-11 71.9 5.9 56 1-58 464-519 (567)
40 2o6q_A Variable lymphocyte rec 98.2 2E-06 6.9E-11 63.5 6.5 61 2-62 159-220 (270)
41 2o6r_A Variable lymphocyte rec 98.2 1.9E-06 6.4E-11 59.7 5.7 58 1-58 29-87 (177)
42 1p9a_G Platelet glycoprotein I 98.2 1.8E-06 6.2E-11 64.8 5.9 61 2-63 150-211 (290)
43 2z66_A Variable lymphocyte rec 98.2 1.6E-06 5.6E-11 64.9 5.5 58 1-58 176-234 (306)
44 3e6j_A Variable lymphocyte rec 98.2 1.9E-06 6.6E-11 62.4 5.7 57 1-57 65-122 (229)
45 4g8a_A TOLL-like receptor 4; l 98.2 1.7E-06 5.9E-11 70.1 5.9 58 1-58 495-553 (635)
46 4b8c_D Glucose-repressible alc 98.2 1.6E-06 5.5E-11 73.0 5.5 54 2-57 272-326 (727)
47 4ecn_A Leucine-rich repeat pro 98.2 1E-06 3.4E-11 75.8 4.1 61 1-61 449-529 (876)
48 2v9t_B SLIT homolog 2 protein 98.2 2.5E-06 8.7E-11 61.4 5.7 58 1-58 57-115 (220)
49 3a79_B TLR6, VLRB.59, TOLL-lik 98.2 1.7E-06 5.9E-11 70.1 5.1 61 1-63 451-513 (562)
50 2ell_A Acidic leucine-rich nuc 98.2 1.3E-06 4.6E-11 59.9 3.6 37 2-38 73-109 (168)
51 2z7x_B TOLL-like receptor 1, v 98.1 2.4E-06 8.3E-11 68.4 5.4 61 1-63 422-484 (520)
52 1dce_A Protein (RAB geranylger 98.1 2.4E-06 8.2E-11 70.1 5.4 54 2-58 443-497 (567)
53 2id5_A Lingo-1, leucine rich r 98.1 2.2E-06 7.7E-11 67.9 4.9 63 1-63 273-336 (477)
54 4b8c_D Glucose-repressible alc 98.1 1.7E-06 5.9E-11 72.8 4.4 55 1-57 248-303 (727)
55 2o6s_A Variable lymphocyte rec 98.1 4.1E-06 1.4E-10 59.4 5.7 57 1-57 53-110 (208)
56 3m19_A Variable lymphocyte rec 98.1 3.9E-06 1.3E-10 61.3 5.7 38 2-39 61-98 (251)
57 4ezg_A Putative uncharacterize 98.1 9.7E-07 3.3E-11 62.4 2.3 58 1-58 89-147 (197)
58 1a9n_A U2A', U2A'; complex (nu 98.1 3E-06 1E-10 58.7 4.3 55 1-57 43-98 (176)
59 2je0_A Acidic leucine-rich nuc 98.1 4.9E-06 1.7E-10 55.9 5.2 57 1-58 18-75 (149)
60 1ziw_A TOLL-like receptor 3; i 98.1 2.2E-06 7.6E-11 70.7 3.9 63 2-64 562-626 (680)
61 4glp_A Monocyte differentiatio 98.1 3.6E-06 1.2E-10 63.4 4.7 41 2-43 226-269 (310)
62 4eco_A Uncharacterized protein 98.1 5.1E-06 1.8E-10 68.7 5.9 58 1-59 514-578 (636)
63 4ezg_A Putative uncharacterize 98.0 5.2E-06 1.8E-10 58.6 4.9 58 1-58 113-170 (197)
64 2z80_A TOLL-like receptor 2, v 98.0 2.3E-06 7.8E-11 65.5 3.2 63 1-64 223-318 (353)
65 3v47_A TOLL-like receptor 5B a 98.0 4.4E-06 1.5E-10 65.6 5.0 41 2-42 301-341 (455)
66 2ell_A Acidic leucine-rich nuc 98.0 4.7E-06 1.6E-10 57.1 4.5 56 1-57 25-81 (168)
67 3vq2_A TLR4, TOLL-like recepto 98.0 3.5E-06 1.2E-10 68.5 4.3 56 2-57 475-531 (606)
68 3rfs_A Internalin B, repeat mo 98.0 7.9E-06 2.7E-10 60.4 5.7 57 1-57 110-167 (272)
69 1wwl_A Monocyte differentiatio 98.0 2.4E-06 8.4E-11 64.4 2.6 56 1-57 96-159 (312)
70 1xku_A Decorin; proteoglycan, 98.0 1.1E-05 3.7E-10 61.0 5.8 56 2-57 194-250 (330)
71 2z66_A Variable lymphocyte rec 98.0 8.7E-06 3E-10 60.9 5.2 58 1-58 151-210 (306)
72 2xot_A Amphoterin-induced prot 98.0 7.1E-06 2.4E-10 63.2 4.8 56 2-57 66-122 (361)
73 2xot_A Amphoterin-induced prot 98.0 7.2E-06 2.4E-10 63.2 4.8 58 1-58 89-147 (361)
74 3o53_A Protein LRIM1, AGAP0063 98.0 5.4E-06 1.8E-10 62.6 4.0 60 1-62 192-252 (317)
75 1wwl_A Monocyte differentiatio 98.0 5.4E-06 1.8E-10 62.5 3.8 57 1-58 122-184 (312)
76 3zyi_A Leucine-rich repeat-con 97.9 9E-06 3.1E-10 64.3 4.9 57 1-57 219-276 (452)
77 4ecn_A Leucine-rich repeat pro 97.9 1.3E-05 4.4E-10 69.0 6.0 53 2-56 730-785 (876)
78 1p9a_G Platelet glycoprotein I 97.9 1.4E-05 4.9E-10 59.8 5.6 37 2-38 102-138 (290)
79 2ft3_A Biglycan; proteoglycan, 97.9 9.3E-06 3.2E-10 61.5 4.5 55 2-57 219-274 (332)
80 4fmz_A Internalin; leucine ric 97.9 1E-05 3.5E-10 61.4 4.4 55 2-58 267-322 (347)
81 1xku_A Decorin; proteoglycan, 97.9 1.9E-05 6.4E-10 59.7 5.8 56 2-57 54-110 (330)
82 3zyj_A Leucine-rich repeat-con 97.9 1.2E-05 4E-10 63.4 4.7 57 1-57 208-265 (440)
83 3j0a_A TOLL-like receptor 5; m 97.9 1.2E-05 4.1E-10 68.4 5.1 57 1-57 74-133 (844)
84 1ozn_A Reticulon 4 receptor; N 97.9 2.1E-05 7.1E-10 58.3 5.8 40 2-41 107-146 (285)
85 4glp_A Monocyte differentiatio 97.9 1.1E-05 3.9E-10 60.6 4.3 54 1-59 252-306 (310)
86 3t6q_A CD180 antigen; protein- 97.9 1.2E-05 4.3E-10 65.3 4.7 42 2-43 59-100 (606)
87 2z62_A TOLL-like receptor 4, v 97.8 1.6E-05 5.6E-10 58.6 4.7 35 3-37 31-65 (276)
88 3oja_A Leucine-rich immune mol 97.8 5.9E-06 2E-10 66.3 2.4 41 2-42 122-162 (487)
89 2z7x_B TOLL-like receptor 1, v 97.8 8.9E-06 3E-10 65.1 3.4 55 2-58 47-101 (520)
90 2z62_A TOLL-like receptor 4, v 97.8 2.6E-05 8.9E-10 57.5 5.7 35 3-37 55-89 (276)
91 3a79_B TLR6, VLRB.59, TOLL-lik 97.8 1.6E-05 5.5E-10 64.4 4.9 41 2-42 54-94 (562)
92 1a9n_A U2A', U2A'; complex (nu 97.8 1.2E-05 4E-10 55.7 3.5 35 2-38 21-56 (176)
93 2z81_A CD282 antigen, TOLL-lik 97.8 1.6E-05 5.4E-10 63.9 4.6 56 2-57 52-108 (549)
94 2o6q_A Variable lymphocyte rec 97.8 3E-05 1E-09 57.2 5.7 41 2-42 87-127 (270)
95 2z63_A TOLL-like receptor 4, v 97.8 1.3E-05 4.5E-10 64.5 4.0 56 2-57 423-480 (570)
96 2ft3_A Biglycan; proteoglycan, 97.8 2.1E-05 7E-10 59.6 4.3 40 2-42 80-119 (332)
97 2id5_A Lingo-1, leucine rich r 97.7 2.5E-05 8.7E-10 61.8 4.8 41 2-42 34-74 (477)
98 3oja_B Anopheles plasmodium-re 97.7 3.7E-05 1.2E-09 63.0 5.7 56 2-57 77-133 (597)
99 1ziw_A TOLL-like receptor 3; i 97.7 3.9E-05 1.3E-09 63.3 5.7 41 2-42 99-139 (680)
100 2z80_A TOLL-like receptor 2, v 97.7 3.4E-05 1.2E-09 58.9 4.8 56 2-57 78-134 (353)
101 3o53_A Protein LRIM1, AGAP0063 97.7 1.3E-05 4.6E-10 60.4 2.4 56 1-57 35-90 (317)
102 3o6n_A APL1; leucine-rich repe 97.7 5.4E-05 1.8E-09 58.5 5.7 41 2-42 71-111 (390)
103 3oja_B Anopheles plasmodium-re 97.7 4.5E-05 1.5E-09 62.4 5.5 37 2-38 101-137 (597)
104 3o6n_A APL1; leucine-rich repe 97.7 3.3E-05 1.1E-09 59.7 4.2 55 2-57 250-305 (390)
105 1jl5_A Outer protein YOPM; leu 97.7 1.2E-05 4.1E-10 64.0 1.7 40 1-44 338-379 (454)
106 2xwt_C Thyrotropin receptor; s 97.6 2.7E-05 9.3E-10 56.2 3.1 37 2-38 82-119 (239)
107 1ds9_A Outer arm dynein; leuci 97.6 8.1E-06 2.8E-10 57.6 0.1 34 2-37 50-83 (198)
108 3cvr_A Invasion plasmid antige 97.6 7.2E-05 2.5E-09 61.5 4.9 36 2-42 122-157 (571)
109 3cvr_A Invasion plasmid antige 97.5 9.3E-05 3.2E-09 60.8 5.3 49 2-57 142-190 (571)
110 1xeu_A Internalin C; cellular 97.5 0.00012 4.2E-09 53.9 5.4 35 2-38 65-99 (263)
111 1ds9_A Outer arm dynein; leuci 97.5 1.4E-05 4.9E-10 56.3 0.2 55 2-58 20-81 (198)
112 2ast_B S-phase kinase-associat 97.5 1.7E-05 5.7E-10 59.8 0.4 56 2-57 95-152 (336)
113 1m9s_A Internalin B; cell inva 97.5 7E-05 2.4E-09 61.9 4.1 53 2-57 155-207 (605)
114 1h6t_A Internalin B; cell adhe 97.5 7.4E-05 2.5E-09 55.9 3.9 38 2-41 136-173 (291)
115 1xeu_A Internalin C; cellular 97.5 0.00011 3.9E-09 54.1 4.9 35 2-38 108-142 (263)
116 4ay9_X Follicle-stimulating ho 97.5 6.9E-05 2.3E-09 57.3 3.4 43 1-43 31-73 (350)
117 2xwt_C Thyrotropin receptor; s 97.4 9.5E-05 3.2E-09 53.3 3.5 34 2-35 33-66 (239)
118 1jl5_A Outer protein YOPM; leu 97.4 0.00014 4.6E-09 57.9 4.6 54 1-61 318-371 (454)
119 3g06_A SSPH2 (leucine-rich rep 97.4 0.00017 5.9E-09 59.8 5.2 51 2-57 243-294 (622)
120 1h6t_A Internalin B; cell adhe 97.4 0.00021 7.3E-09 53.3 5.0 35 2-38 114-148 (291)
121 3bz5_A Internalin-J, INLJ; leu 97.4 0.00028 9.7E-09 56.1 5.8 39 1-42 213-251 (457)
122 3rfe_A Platelet glycoprotein I 97.3 0.00038 1.3E-08 46.2 5.5 60 3-64 11-72 (130)
123 1m9s_A Internalin B; cell inva 97.3 0.00021 7.1E-09 59.0 5.0 54 1-57 132-185 (605)
124 2ca6_A RAN GTPase-activating p 97.3 5.1E-05 1.7E-09 58.6 0.6 21 16-36 236-256 (386)
125 3g06_A SSPH2 (leucine-rich rep 97.2 0.0001 3.4E-09 61.2 2.2 43 1-44 262-304 (622)
126 1h6u_A Internalin H; cell adhe 97.2 0.00036 1.2E-08 52.5 4.9 35 2-38 65-99 (308)
127 2ca6_A RAN GTPase-activating p 97.2 0.00012 4.1E-09 56.5 2.2 17 22-38 92-108 (386)
128 3goz_A Leucine-rich repeat-con 97.2 0.00011 3.7E-09 56.4 1.9 40 2-41 53-97 (362)
129 1o6v_A Internalin A; bacterial 97.2 0.00036 1.2E-08 55.2 4.8 38 2-41 289-326 (466)
130 4fmz_A Internalin; leucine ric 97.2 0.00022 7.7E-09 53.9 3.4 55 1-58 244-298 (347)
131 3goz_A Leucine-rich repeat-con 97.2 0.00016 5.6E-09 55.4 2.7 58 1-58 23-91 (362)
132 1o6v_A Internalin A; bacterial 97.2 0.00032 1.1E-08 55.5 4.3 35 2-38 311-345 (466)
133 2ast_B S-phase kinase-associat 97.1 0.00021 7E-09 53.8 2.8 20 16-35 214-233 (336)
134 1h6u_A Internalin H; cell adhe 97.1 0.00047 1.6E-08 51.8 4.8 18 20-37 169-186 (308)
135 3rw6_A Nuclear RNA export fact 97.1 0.00042 1.4E-08 51.7 4.1 40 1-42 197-238 (267)
136 3bz5_A Internalin-J, INLJ; leu 96.9 0.0006 2.1E-08 54.2 3.9 40 2-41 235-281 (457)
137 3rfe_A Platelet glycoprotein I 96.9 0.0011 3.6E-08 44.1 4.2 37 1-37 32-68 (130)
138 1z7x_W Ribonuclease inhibitor; 96.8 0.00021 7E-09 56.0 0.1 57 1-57 314-380 (461)
139 1z7x_W Ribonuclease inhibitor; 96.3 0.0013 4.5E-08 51.4 2.0 58 1-58 342-409 (461)
140 4ay9_X Follicle-stimulating ho 96.3 0.0043 1.5E-07 47.2 4.7 40 2-42 179-219 (350)
141 3ogk_B Coronatine-insensitive 96.2 0.00072 2.5E-08 54.6 -0.3 58 1-58 464-524 (592)
142 3un9_A NLR family member X1; l 96.0 0.0013 4.4E-08 51.0 0.5 36 2-37 157-196 (372)
143 2p1m_B Transport inhibitor res 95.6 0.0016 5.4E-08 52.5 -0.6 58 1-58 457-517 (594)
144 3ogk_B Coronatine-insensitive 95.2 0.0071 2.4E-07 48.7 1.9 39 1-39 489-528 (592)
145 3un9_A NLR family member X1; l 95.2 0.0096 3.3E-07 46.1 2.5 58 1-58 184-250 (372)
146 2ra8_A Uncharacterized protein 95.0 0.0088 3E-07 46.3 1.8 57 1-57 253-317 (362)
147 1io0_A Tropomodulin; LRR prote 94.6 0.018 6.1E-07 40.0 2.5 36 2-37 38-78 (185)
148 1io0_A Tropomodulin; LRR prote 94.5 0.025 8.5E-07 39.2 3.1 39 1-39 66-108 (185)
149 2ra8_A Uncharacterized protein 93.8 0.0095 3.3E-07 46.1 -0.3 18 22-39 250-267 (362)
150 2p1m_B Transport inhibitor res 93.4 0.012 4.1E-07 47.3 -0.4 57 1-58 433-492 (594)
151 2k1k_A Ephrin type-A receptor 89.7 0.48 1.6E-05 24.4 3.4 20 98-117 14-33 (38)
152 1pgv_A TMD-1, tropomodulin TMD 88.2 0.3 1E-05 34.6 2.7 36 2-37 43-83 (197)
153 3e4g_A ATP synthase subunit S, 88.1 0.33 1.1E-05 33.7 2.8 35 1-35 62-96 (176)
154 3sb4_A Hypothetical leucine ri 87.8 0.61 2.1E-05 34.7 4.3 41 1-43 227-267 (329)
155 2l9u_A Receptor tyrosine-prote 78.2 3.2 0.00011 20.8 3.2 23 97-119 9-31 (40)
156 1pgv_A TMD-1, tropomodulin TMD 75.8 1.6 5.6E-05 30.7 2.5 38 1-38 71-112 (197)
157 3sb4_A Hypothetical leucine ri 74.5 2 6.8E-05 31.9 2.8 36 1-37 102-137 (329)
158 2klu_A T-cell surface glycopro 68.7 2.1 7.3E-05 24.7 1.4 16 100-115 14-29 (70)
159 3e4g_A ATP synthase subunit S, 67.2 1.7 5.7E-05 30.1 0.9 34 1-34 86-124 (176)
160 4fdw_A Leucine rich hypothetic 47.3 24 0.00082 27.1 4.5 35 2-37 159-193 (401)
161 2l34_A TYRO protein tyrosine k 38.3 37 0.0012 16.6 2.8 17 100-116 12-28 (33)
162 1pi7_A VPU protein, U ORF prot 37.9 40 0.0014 16.9 3.0 10 108-117 17-26 (36)
163 2k21_A Potassium voltage-gated 28.8 61 0.0021 21.2 3.4 24 95-118 53-76 (138)
164 4fdw_A Leucine rich hypothetic 25.5 88 0.003 23.9 4.5 31 1-32 181-211 (401)
165 4h09_A Hypothetical leucine ri 22.5 73 0.0025 23.6 3.4 16 20-35 282-297 (379)
166 1hgv_A PH75 inovirus major coa 21.5 94 0.0032 15.8 3.5 15 98-112 16-30 (46)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.53 E-value=5.2e-15 Score=124.81 Aligned_cols=73 Identities=44% Similarity=0.780 Sum_probs=65.5
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCccccccccCCcCCCCCCCCCCCCC
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSALCGSMIKRKCSSALA 74 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~~lcg~~~~~~c~~~~~ 74 (147)
+|+.||||+|+|+|.||..+++++.|+.||+|+|+|+|+||...++.++...+|.||+++||.|.. .|....+
T Consensus 681 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~ 753 (768)
T 3rgz_A 681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNA 753 (768)
T ss_dssp TCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC-
T ss_pred CCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCcc
Confidence 478999999999999999999999999999999999999999889999999999999999999876 7875443
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.20 E-value=1.4e-11 Score=93.67 Aligned_cols=68 Identities=43% Similarity=0.817 Sum_probs=62.7
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCccccccccCCcCCCCCCCC
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSALCGSMIKRKC 69 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~~lcg~~~~~~c 69 (147)
+|++|||++|+++|.+|..+..++.|+.|++++|+++|.+|....+.++....+.||+.+||.|.. .|
T Consensus 245 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp TCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred CCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 488999999999999999999999999999999999999999878889999999999999997754 45
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.97 E-value=6.2e-10 Score=93.86 Aligned_cols=57 Identities=28% Similarity=0.482 Sum_probs=41.8
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCcccccccc
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNS 58 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~ 58 (147)
|+.||||+|+++|.||..+++++.|+.||+|+|+|+|.+|..+ .+..+..+.+.+|+
T Consensus 658 L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 658 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred CCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 6677777777777777777777777777777777777777765 45566666666664
No 4
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.92 E-value=1.5e-09 Score=92.46 Aligned_cols=59 Identities=25% Similarity=0.375 Sum_probs=34.1
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCccccccccCCcCCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSALCGSM 64 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~~lcg~~ 64 (147)
|+.|||++|+|++..|..+. ++|+.||+++|+|+|.+|.. +.++..+.+.||+..|.++
T Consensus 506 L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 506 LRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECE 564 (844)
T ss_dssp CSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSS
T ss_pred hheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCcccccc
Confidence 44555555555544333333 45555555555555555543 4466777888999988554
No 5
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.76 E-value=7.6e-09 Score=73.32 Aligned_cols=61 Identities=21% Similarity=0.310 Sum_probs=30.4
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCG 62 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg 62 (147)
|+.|||++|++++..|..+..+++|+.|++++|++++.+|..+ .+.++..+.+.+|+.-|.
T Consensus 80 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 4445555555554444444555555555555555555555443 334444455555555443
No 6
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.72 E-value=2.1e-08 Score=69.75 Aligned_cols=61 Identities=18% Similarity=0.199 Sum_probs=27.8
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCG 62 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg 62 (147)
|+.|||++|+|++..|..+..+++|+.|++++|+|++..|..+ .+.++..+.+.+|+.-|.
T Consensus 56 L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 56 LTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 4444444444444333334444455555555555544333322 334444445555555444
No 7
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.70 E-value=2.3e-08 Score=76.41 Aligned_cols=63 Identities=21% Similarity=0.237 Sum_probs=45.3
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCccccccccCCcCC
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSALCGS 63 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~~lcg~ 63 (147)
+|+.|||++|+|+|..|..|.+|+.|+.|||++|+|++..|..+....+..+.+.+|+.-|.+
T Consensus 57 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c 119 (347)
T 2ifg_A 57 ELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSC 119 (347)
T ss_dssp CCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCCCCG
T ss_pred CCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCccCCC
Confidence 477888888888888887888888888888888888865554433333666677777776654
No 8
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.68 E-value=2e-08 Score=72.62 Aligned_cols=62 Identities=13% Similarity=0.185 Sum_probs=34.6
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCGS 63 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg~ 63 (147)
|++|||++|++++..|..+..+++|+.|++++|++++..|..+ .+.++..+.+.+|+.-|..
T Consensus 107 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 107 LKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp CCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 4555555555555555555555555666666666655555544 3445555555666555543
No 9
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.63 E-value=5.5e-08 Score=67.99 Aligned_cols=57 Identities=16% Similarity=0.144 Sum_probs=38.9
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN 57 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn 57 (147)
.|+.|||++|++++..|..+..++.|+.|+|++|+|++..|..+ .+..+..+.+.+|
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 36778888888887777777777778888888887777444332 4555555555555
No 10
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.60 E-value=5.5e-08 Score=78.96 Aligned_cols=64 Identities=17% Similarity=0.184 Sum_probs=49.3
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-cc-ccCCccccccccCCcCCC
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QF-ATFDDRSYKGNSALCGSM 64 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~-~~~~~~~~~gn~~lcg~~ 64 (147)
+|+.|||++|+|++..|..+..+++|+.||+++|++++..|..+ .+ .++..+.+.||+.-|.+.
T Consensus 519 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 519 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp TCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 46778888888887777778888888888888888888888765 33 467777888999888654
No 11
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.58 E-value=6.3e-08 Score=68.73 Aligned_cols=62 Identities=19% Similarity=0.211 Sum_probs=31.4
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCGS 63 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg~ 63 (147)
|+.|||++|++++..|..+..+++|+.|++++|++++..+..+ .+.++..+.+.+|+..|..
T Consensus 80 L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 80 LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred CCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence 4455555555555444455555555555555555553333222 3444555556666665543
No 12
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.56 E-value=8e-08 Score=69.41 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=39.1
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCGS 63 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg~ 63 (147)
|+.|||++|++++..|..+..+++|+.|++++|++++..|..+ .+.++..+.+.+|+..|..
T Consensus 106 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 168 (220)
T 2v9t_B 106 LQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDC 168 (220)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred CCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCC
Confidence 5566666666666666666666666666666666666555443 3455566666777766643
No 13
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.51 E-value=1e-07 Score=67.39 Aligned_cols=56 Identities=16% Similarity=0.251 Sum_probs=25.6
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN 57 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn 57 (147)
|+.|||++|++++.+|..+..++.|+.|++++|++++..|..+ .+.++..+.+.+|
T Consensus 56 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 112 (192)
T 1w8a_A 56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN 112 (192)
T ss_dssp CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSS
T ss_pred CCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence 4444555555554444444445555555555555544444332 2333344344333
No 14
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.51 E-value=1.7e-07 Score=68.03 Aligned_cols=61 Identities=20% Similarity=0.316 Sum_probs=35.5
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCGS 63 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg~ 63 (147)
|+.|+|++|+++ .||..+..++.|+.|++++|++++..+..+ .+.++..+.+.||+.-|..
T Consensus 114 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 114 LKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred hCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 455666666665 556666666666666666666665444333 3455556666667666544
No 15
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.50 E-value=1.8e-07 Score=65.32 Aligned_cols=63 Identities=16% Similarity=0.180 Sum_probs=49.1
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcCC
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCGS 63 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg~ 63 (147)
+|+.|||++|+|++-.|..+..++.|+.|+|++|++++..|..+ .+.++..+.+.+|+.-|.+
T Consensus 58 ~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 58 NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred CCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 47889999999998555557889999999999999987555434 5677778888888877754
No 16
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.48 E-value=2e-07 Score=64.75 Aligned_cols=58 Identities=17% Similarity=0.199 Sum_probs=49.0
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCcccccccc
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNS 58 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~ 58 (147)
+|+.|||++|++++..|..+..++.|+.|++++|++++..|..+ .+.++..+.+.+|.
T Consensus 31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 47899999999999999999999999999999999997666544 56777777777774
No 17
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.48 E-value=2.1e-07 Score=71.01 Aligned_cols=55 Identities=18% Similarity=0.187 Sum_probs=26.5
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN 57 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn 57 (147)
|+.|||++|++++ +|..++.+++|+.|++++|++.|.+|..+ .+.++..+.+.+|
T Consensus 208 L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n 263 (328)
T 4fcg_A 208 LKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC 263 (328)
T ss_dssp CCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTC
T ss_pred CCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCC
Confidence 4455555555553 44445555555555555555555555443 3334444444443
No 18
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.48 E-value=1.7e-07 Score=65.07 Aligned_cols=57 Identities=16% Similarity=0.177 Sum_probs=39.7
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN 57 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn 57 (147)
+|+.|||++|++++..|..+..++.|+.|++++|++++..|..+ .+.++..+.+.+|
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 110 (177)
T 2o6r_A 53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN 110 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCC
Confidence 36778888888876655667778888888888888876665543 4556666666555
No 19
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.46 E-value=9.2e-08 Score=72.48 Aligned_cols=40 Identities=35% Similarity=0.639 Sum_probs=17.0
Q ss_pred cEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCC
Q 046778 3 ESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42 (147)
Q Consensus 3 ~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~ 42 (147)
++|||++|+++|.+|..+..+++|++|++++|+++|.+|.
T Consensus 104 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 143 (313)
T 1ogq_A 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP 143 (313)
T ss_dssp SEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG
T ss_pred CEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCCh
Confidence 3444444444444444444444444444444444444443
No 20
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.44 E-value=3.7e-07 Score=67.71 Aligned_cols=62 Identities=19% Similarity=0.193 Sum_probs=38.8
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCGS 63 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg~ 63 (147)
|+.|||++|++++..|..++.+++|+.|++++|++++..|..+ .+.++..+.+.+|+..|..
T Consensus 159 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 221 (272)
T 3rfs_A 159 LTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 221 (272)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred CCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC
Confidence 5666666666666555556666666677777776666555443 4555666666666665544
No 21
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.43 E-value=3.4e-07 Score=67.05 Aligned_cols=61 Identities=20% Similarity=0.268 Sum_probs=36.6
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCG 62 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg 62 (147)
|+.|||++|++++..|..++.+++|+.|++++|++++..|..+ .+.++..+.+.+|+.-|.
T Consensus 133 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 133 LKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 5566666666665555456666666666666666665555443 345555666666665554
No 22
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.43 E-value=1.9e-07 Score=71.33 Aligned_cols=58 Identities=17% Similarity=0.100 Sum_probs=50.9
Q ss_pred CccEEECCC-CcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCcccccccc
Q 046778 1 MIESLDLSR-NKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNS 58 (147)
Q Consensus 1 ~L~~LdLs~-N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~ 58 (147)
+|+.|||++ |+|++..|..|++|++|+.|+|++|+|+|..|..+ .+.++..+.+.+|.
T Consensus 32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 489999996 99999988999999999999999999999988865 57777777777774
No 23
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.39 E-value=6e-07 Score=63.76 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=20.7
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIP 41 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP 41 (147)
|++|||++|++++..|..+..++.|++|++++|++++..|
T Consensus 78 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 117 (208)
T 2o6s_A 78 LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPD 117 (208)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCH
Confidence 4555555555554444444555555555555555554433
No 24
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.38 E-value=4.5e-07 Score=64.26 Aligned_cols=55 Identities=18% Similarity=0.236 Sum_probs=31.8
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN 57 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn 57 (147)
|+.|+|++|+++ .+|..+.+++.|+.|++++|++++..|..+ .+..+..+.+.+|
T Consensus 33 l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 33 VTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp CCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 556666666665 566666666666666666666665555433 3444444444444
No 25
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.37 E-value=5.2e-07 Score=65.10 Aligned_cols=56 Identities=11% Similarity=0.138 Sum_probs=34.5
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN 57 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn 57 (147)
|+.|||++|++++..|..+..++.|+.|++++|++++..|..+ .+.++..+.+.+|
T Consensus 59 L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 115 (220)
T 2v70_A 59 LRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN 115 (220)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTS
T ss_pred CCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCC
Confidence 5666777777766666666666667777777776666555433 3444555555554
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.37 E-value=5.7e-07 Score=70.71 Aligned_cols=63 Identities=19% Similarity=0.174 Sum_probs=39.8
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcCCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCGSM 64 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg~~ 64 (147)
|+.|||++|++++..|..+..+++|+.|++++|++++..|..+ .+.++..+.+.+|+..|..+
T Consensus 349 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 5666666666666666666666677777777777666444332 45556666666776666554
No 27
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.35 E-value=5.4e-07 Score=68.77 Aligned_cols=64 Identities=16% Similarity=0.140 Sum_probs=54.8
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcCCC
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCGSM 64 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg~~ 64 (147)
+|+.|||++|++.|.+|..++.+++|+.|++++|++.|.+|..+ .+.++..+.+.+|+.+...|
T Consensus 230 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp TCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred CCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence 47899999999999999999999999999999999999999876 67778888888876655433
No 28
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.35 E-value=6.7e-07 Score=72.09 Aligned_cols=61 Identities=21% Similarity=0.250 Sum_probs=33.3
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCG 62 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg 62 (147)
|+.|||++|++++..|..+..+++|+.|++++|++++..|..+ .+.++....+.+|+..|.
T Consensus 472 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence 4555555555555555555555555555555555555554433 344455555555555544
No 29
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.33 E-value=2.2e-07 Score=62.66 Aligned_cols=56 Identities=23% Similarity=0.281 Sum_probs=37.5
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCcccccccc
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNS 58 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~ 58 (147)
+|+.|+|++|++++. ..++.++.|+.|++++|++++.+|... .+.++..+.+.+|.
T Consensus 43 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~ 99 (149)
T 2je0_A 43 ELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK 99 (149)
T ss_dssp TCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSC
T ss_pred CCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCc
Confidence 366777777777765 566777777777777777777666654 35566666665553
No 30
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.32 E-value=3.7e-07 Score=75.49 Aligned_cols=62 Identities=11% Similarity=0.127 Sum_probs=50.6
Q ss_pred CccEEECCCCccccc-----------------Cchhhh--cCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCC
Q 046778 1 MIESLDLSRNKLSGR-----------------IPPQLT--ELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSAL 60 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~-----------------iP~~~~--~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~l 60 (147)
+|++|||++|+++|+ ||..++ ++++|++|++++|++.|.+|..+ .+.++..+.+.+|..+
T Consensus 207 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l 286 (636)
T 4eco_A 207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI 286 (636)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTS
T ss_pred CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCC
Confidence 478899999999997 999988 99999999999999999999876 5677777777777534
Q ss_pred cC
Q 046778 61 CG 62 (147)
Q Consensus 61 cg 62 (147)
.|
T Consensus 287 ~~ 288 (636)
T 4eco_A 287 SG 288 (636)
T ss_dssp CH
T ss_pred cc
Confidence 43
No 31
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.31 E-value=5.5e-07 Score=73.34 Aligned_cols=62 Identities=21% Similarity=0.255 Sum_probs=35.6
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccc-cCCccccccccCCcCCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFA-TFDDRSYKGNSALCGSM 64 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~-~~~~~~~~gn~~lcg~~ 64 (147)
|+.|||++|++++.+|..+.++++|+.||+++|+++ .+|..+ .+. .+....+.||+..|..+
T Consensus 499 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 499 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred CCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 455566666666555555666666666666666655 455443 232 35556667777776554
No 32
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.30 E-value=3.8e-07 Score=67.78 Aligned_cols=62 Identities=19% Similarity=0.273 Sum_probs=37.2
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCGS 63 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg~ 63 (147)
|+.|||++|++++..|..+..++.|+.|++++|++++..|..+ .+..+..+.+.+|+..|..
T Consensus 179 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241 (285)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred cCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCC
Confidence 5566666666666666666666666666666666665444323 3455555666666666544
No 33
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.29 E-value=3.9e-07 Score=73.23 Aligned_cols=61 Identities=25% Similarity=0.348 Sum_probs=50.5
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcCC
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCGS 63 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg~ 63 (147)
+|+.|||++|+++| +|+.+..++.|+.||+++|++++ +|..+ .+..+..+.+.||+..|+.
T Consensus 192 ~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 192 KLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp TCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred CCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcc
Confidence 47889999999998 45558999999999999999997 67665 5577888888999888764
No 34
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.28 E-value=7.5e-07 Score=71.64 Aligned_cols=62 Identities=21% Similarity=0.248 Sum_probs=49.9
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcCCC
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCGSM 64 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg~~ 64 (147)
+|+.|||++|+++ .||. ...++.|+.||+++|++++.+|..+ .+.++..+.+.+|+..|..+
T Consensus 452 ~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 452 RLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp TCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred hhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 4678888888888 6887 5678899999999999998888765 66778888888998887654
No 35
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.27 E-value=5.2e-07 Score=73.47 Aligned_cols=61 Identities=21% Similarity=0.298 Sum_probs=33.6
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCGS 63 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg~ 63 (147)
|+.|||++|++++.+|..+.+++.| .||+++|++++.+|..+ .+.++....+.||+..|..
T Consensus 502 L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 502 MNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp CCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred CCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccC
Confidence 4555555555555555555555555 55555555555544433 3445555566666666643
No 36
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.27 E-value=7.6e-07 Score=66.73 Aligned_cols=59 Identities=27% Similarity=0.375 Sum_probs=47.8
Q ss_pred CccEEECCCCcccc--cCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccc--cCCccccccccCCcC
Q 046778 1 MIESLDLSRNKLSG--RIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFA--TFDDRSYKGNSALCG 62 (147)
Q Consensus 1 ~L~~LdLs~N~LsG--~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~--~~~~~~~~gn~~lcg 62 (147)
+|+.||||+|+|++ .+|..+..+++|+.|||++|++++. ..+ .+. .+..+.+.||+ +|+
T Consensus 171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Np-l~~ 234 (267)
T 3rw6_A 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNS-LCD 234 (267)
T ss_dssp TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTST-TGG
T ss_pred CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCc-Ccc
Confidence 48899999999999 8889999999999999999999986 222 233 66777777886 554
No 37
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.26 E-value=1.2e-06 Score=69.21 Aligned_cols=63 Identities=19% Similarity=0.119 Sum_probs=42.8
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcCCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCGSM 64 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg~~ 64 (147)
|+.|+|++|++++..|..+..+++|+.||+++|++++..+..+ .+.++..+.+.+|+.-|...
T Consensus 244 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 244 LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred CCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 5566666666666666666777777777777777775555443 45667777788888777653
No 38
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.25 E-value=1.2e-06 Score=69.14 Aligned_cols=62 Identities=16% Similarity=0.151 Sum_probs=43.3
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCGS 63 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg~ 63 (147)
|+.|+|++|++++..|..+..+++|+.||+++|++++..+..+ .+.++..+.+.+|+..|.+
T Consensus 233 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 233 LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNC 295 (440)
T ss_dssp CCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred CCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCC
Confidence 5566666666666666666777777777777787776555543 4566777788899888865
No 39
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.25 E-value=1.2e-06 Score=71.87 Aligned_cols=56 Identities=27% Similarity=0.448 Sum_probs=44.4
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCcccccccc
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNS 58 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~ 58 (147)
+|+.|||++|+|+ .+|..++.+++|+.|+|++|++++ +|.-..+.++..+.+.+|.
T Consensus 464 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 464 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VDGVANLPRLQELLLCNNR 519 (567)
T ss_dssp TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CGGGTTCSSCCEEECCSSC
T ss_pred cCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-CcccCCCCCCcEEECCCCC
Confidence 4788999999998 889999999999999999999988 7732256677777776663
No 40
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.24 E-value=2e-06 Score=63.53 Aligned_cols=61 Identities=16% Similarity=0.165 Sum_probs=26.8
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCG 62 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg 62 (147)
|+.|+|++|++++..|..+..+++|+.|++++|++++..+..+ .+.++..+.+.+|+..|.
T Consensus 159 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred cceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 3444444444444333334444444444554444443322222 233444444555554443
No 41
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.23 E-value=1.9e-06 Score=59.74 Aligned_cols=58 Identities=17% Similarity=0.153 Sum_probs=46.4
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCcccccccc
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNS 58 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~ 58 (147)
+|+.|++++|++++..|..++.++.|++|++++|++++..|..+ .+.++..+.+.+|.
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 47899999999998777778999999999999999987666543 56677777777663
No 42
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.22 E-value=1.8e-06 Score=64.79 Aligned_cols=61 Identities=26% Similarity=0.286 Sum_probs=29.1
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCGS 63 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg~ 63 (147)
|+.|||++|+|++-.+..+..+++|+.|++++|+++ .+|... ....+....+.||+..|..
T Consensus 150 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred CCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 344444444444322223344444555555555444 334332 2334455556778777754
No 43
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.21 E-value=1.6e-06 Score=64.88 Aligned_cols=58 Identities=24% Similarity=0.199 Sum_probs=41.7
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCcccccccc
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNS 58 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~ 58 (147)
+|+.|||++|++++..|..+..+++|+.|++++|++++..+..+ .+.++..+.+.+|.
T Consensus 176 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 176 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence 46778888888888778888888888888888888877655443 44556666666663
No 44
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.21 E-value=1.9e-06 Score=62.39 Aligned_cols=57 Identities=16% Similarity=0.110 Sum_probs=36.1
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN 57 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn 57 (147)
+|+.|+|++|++++-.+..+..++.|+.|++++|++++..|..+ .+.++..+.+.+|
T Consensus 65 ~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N 122 (229)
T 3e6j_A 65 NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN 122 (229)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCC
Confidence 36677777777755444556777777777777777776555433 3455555555555
No 45
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.21 E-value=1.7e-06 Score=70.12 Aligned_cols=58 Identities=24% Similarity=0.199 Sum_probs=46.9
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCcccccccc
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNS 58 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~ 58 (147)
+|+.|||++|+|++.+|..++++++|+.|+|++|++++..|..+ .+.++..+.+.+|.
T Consensus 495 ~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~ 553 (635)
T 4g8a_A 495 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 553 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSC
T ss_pred ccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCc
Confidence 47889999999999888889999999999999999988877655 45666766776664
No 46
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.19 E-value=1.6e-06 Score=72.97 Aligned_cols=54 Identities=26% Similarity=0.365 Sum_probs=26.0
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN 57 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn 57 (147)
|+.|||++|+|+ .||..+++|++|+.|+|++|+|+ .||..+ .+.++..+.+.+|
T Consensus 272 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 272 LRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp CCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred CCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCC
Confidence 445555555555 45555555555555555555553 444433 3334444444444
No 47
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.18 E-value=1e-06 Score=75.76 Aligned_cols=61 Identities=10% Similarity=0.133 Sum_probs=47.7
Q ss_pred CccEEECCCCcccc-----------------cCchhhh--cCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCC
Q 046778 1 MIESLDLSRNKLSG-----------------RIPPQLT--ELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSAL 60 (147)
Q Consensus 1 ~L~~LdLs~N~LsG-----------------~iP~~~~--~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~l 60 (147)
+|+.|||++|+|+| .||..++ ++++|+.|++++|++.|.+|..+ .+.++..+.+.+|..+
T Consensus 449 ~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~l 528 (876)
T 4ecn_A 449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI 528 (876)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTS
T ss_pred CCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCc
Confidence 47888888888888 4888877 88888888888888888888766 5666777777666533
Q ss_pred c
Q 046778 61 C 61 (147)
Q Consensus 61 c 61 (147)
.
T Consensus 529 s 529 (876)
T 4ecn_A 529 S 529 (876)
T ss_dssp C
T ss_pred c
Confidence 3
No 48
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.18 E-value=2.5e-06 Score=61.42 Aligned_cols=58 Identities=17% Similarity=0.175 Sum_probs=44.4
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCcccccccc
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNS 58 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~ 58 (147)
+|+.|||++|++++..|..+..++.|+.|++++|++++-.+..+ .+.++..+.+.+|.
T Consensus 57 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 115 (220)
T 2v9t_B 57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANK 115 (220)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCC
Confidence 47889999999998889999999999999999999985444332 45666666666663
No 49
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.17 E-value=1.7e-06 Score=70.13 Aligned_cols=61 Identities=28% Similarity=0.450 Sum_probs=47.6
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCc-c-ccccCCccccccccCCcCC
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDK-E-QFATFDDRSYKGNSALCGS 63 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~-~-~~~~~~~~~~~gn~~lcg~ 63 (147)
+|+.|||++|+++ .||..+..++.|+.|++++|+++ .+|.. + .+..+....+.+|+..|..
T Consensus 451 ~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 451 KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp TCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred cCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCc
Confidence 3677888888887 68888888888999999999988 57765 3 5667777778888887754
No 50
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.15 E-value=1.3e-06 Score=59.88 Aligned_cols=37 Identities=30% Similarity=0.441 Sum_probs=19.5
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSG 38 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G 38 (147)
|+.|||++|++++.+|..+.+++.|+.|++++|++++
T Consensus 73 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 109 (168)
T 2ell_A 73 LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD 109 (168)
T ss_dssp CCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS
T ss_pred CCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc
Confidence 4455555555555555555555555555555555544
No 51
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.14 E-value=2.4e-06 Score=68.36 Aligned_cols=61 Identities=31% Similarity=0.482 Sum_probs=43.4
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCc-c-ccccCCccccccccCCcCC
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDK-E-QFATFDDRSYKGNSALCGS 63 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~-~-~~~~~~~~~~~gn~~lcg~ 63 (147)
+|+.|||++|+++ .||..+..++.|+.|++++|+++ .+|.. + .+..+....+.+|+..|.+
T Consensus 422 ~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 422 RIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred cCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccC
Confidence 3667777777777 67777777888888888888887 46654 3 4566666777777776654
No 52
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.14 E-value=2.4e-06 Score=70.09 Aligned_cols=54 Identities=19% Similarity=0.322 Sum_probs=42.4
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCcccccccc
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNS 58 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~ 58 (147)
|+.|||++|+|++ +|. ++.+++|+.|++++|+|+ .+|..+ .+..+..+.+.+|.
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~ 497 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNA 497 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCC
Confidence 6778888888887 776 888888888888888888 788766 56667776776663
No 53
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.13 E-value=2.2e-06 Score=67.91 Aligned_cols=63 Identities=21% Similarity=0.264 Sum_probs=48.2
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcCC
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCGS 63 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg~ 63 (147)
+|+.|+|++|++++..|..+..+++|+.||+++|++++..|..+ .+.++..+.+.+|+..|..
T Consensus 273 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c 336 (477)
T 2id5_A 273 RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDC 336 (477)
T ss_dssp TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSG
T ss_pred cCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCcc
Confidence 46778888888888888888888888888888888887555443 4567777778888877754
No 54
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.13 E-value=1.7e-06 Score=72.80 Aligned_cols=55 Identities=22% Similarity=0.368 Sum_probs=42.1
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN 57 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn 57 (147)
+|++|||++|+|+ .||..+++|++|+.|||++|+|+ .+|..+ .+.++..+.+.+|
T Consensus 248 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N 303 (727)
T 4b8c_D 248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDN 303 (727)
T ss_dssp SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSS
T ss_pred CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCC
Confidence 3677888888888 78888888888888888888888 778766 5566666666666
No 55
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.12 E-value=4.1e-06 Score=59.39 Aligned_cols=57 Identities=21% Similarity=0.211 Sum_probs=37.5
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN 57 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn 57 (147)
+|++|||++|++++..+..+..++.|++|++++|++++..|..+ .+.++..+.+.+|
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 110 (208)
T 2o6s_A 53 SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCC
Confidence 36777788777776555556777778888888777776555433 4455555555555
No 56
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.12 E-value=3.9e-06 Score=61.31 Aligned_cols=38 Identities=21% Similarity=0.280 Sum_probs=18.4
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGP 39 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~ 39 (147)
|++|||++|++++..|..+..++.|+.|++++|++++.
T Consensus 61 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 98 (251)
T 3m19_A 61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98 (251)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC
T ss_pred CCEEECCCCcCCccCHhHhccCCcCCEEECCCCccccc
Confidence 44455555555544444444444555555555544433
No 57
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.11 E-value=9.7e-07 Score=62.35 Aligned_cols=58 Identities=17% Similarity=0.221 Sum_probs=40.5
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCcccccccc
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNS 58 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~ 58 (147)
+|++|++++|++++..|..++.+++|+.|++++|++++..|..+ .+..+..+.+.+|.
T Consensus 89 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 89 NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147 (197)
T ss_dssp TCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred CCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence 36777777777777777777777777777777777777666544 45556666666654
No 58
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.08 E-value=3e-06 Score=58.71 Aligned_cols=55 Identities=15% Similarity=0.183 Sum_probs=34.0
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCc-cccccCCccccccc
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDK-EQFATFDDRSYKGN 57 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~-~~~~~~~~~~~~gn 57 (147)
+|+.|||++|++++- ..++.++.|+.|++++|++++..|.. ..+.++..+.+.+|
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 98 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN 98 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC
Confidence 366777777777764 45677777777777777776543332 14455555555555
No 59
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.08 E-value=4.9e-06 Score=55.92 Aligned_cols=57 Identities=12% Similarity=0.176 Sum_probs=47.3
Q ss_pred CccEEECCCCccc-ccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCcccccccc
Q 046778 1 MIESLDLSRNKLS-GRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNS 58 (147)
Q Consensus 1 ~L~~LdLs~N~Ls-G~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~ 58 (147)
+|+.|++++|+++ |.+|..+..++.|+.|++++|++++. +.-..+..+..+.+.+|.
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~ 75 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNR 75 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCc
Confidence 3789999999999 99999999999999999999999987 332256667777776664
No 60
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.06 E-value=2.2e-06 Score=70.74 Aligned_cols=63 Identities=16% Similarity=0.165 Sum_probs=37.5
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc--ccccCCccccccccCCcCCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE--QFATFDDRSYKGNSALCGSM 64 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~--~~~~~~~~~~~gn~~lcg~~ 64 (147)
|+.|||++|++++-.|..+..++.|+.|++++|++++..|..+ .+.++....+.||+..|.++
T Consensus 562 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 562 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred cceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 4556666666664333344556666666666666666555433 34566667777888888654
No 61
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.06 E-value=3.6e-06 Score=63.36 Aligned_cols=41 Identities=32% Similarity=0.528 Sum_probs=19.6
Q ss_pred ccEEECCCCcccccCchhhhcC---CCCCeeecCCCcCCCCCCCc
Q 046778 2 IESLDLSRNKLSGRIPPQLTEL---NFLSNFNVSYNNLSGPIPDK 43 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l---~~L~~l~ls~N~l~G~iP~~ 43 (147)
|++||||+|++++.+|..+..+ +.|+.|++++|+++ .+|..
T Consensus 226 L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~ 269 (310)
T 4glp_A 226 PHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKG 269 (310)
T ss_dssp CSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSC
T ss_pred CCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhh
Confidence 4445555555555444444443 34555555555554 44443
No 62
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.06 E-value=5.1e-06 Score=68.68 Aligned_cols=58 Identities=21% Similarity=0.248 Sum_probs=47.5
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeec------CCCcCCCCCCCcc-ccccCCccccccccC
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNV------SYNNLSGPIPDKE-QFATFDDRSYKGNSA 59 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~l------s~N~l~G~iP~~~-~~~~~~~~~~~gn~~ 59 (147)
+|+.|||++|++++ +|..+.+++.|+.|++ ++|++.|.+|..+ .+.++..+.+.+|..
T Consensus 514 ~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 514 YLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp TCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred CcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 47889999999998 8999999999999988 5688889999876 567777777777754
No 63
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.04 E-value=5.2e-06 Score=58.56 Aligned_cols=58 Identities=16% Similarity=0.225 Sum_probs=48.8
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCcccccccc
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNS 58 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~ 58 (147)
+|+.|||++|++++..|..++.++.|+.|++++|++.+.+|.-..+.++..+.+.+|.
T Consensus 113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG 170 (197)
T ss_dssp TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC
T ss_pred CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC
Confidence 4889999999999999999999999999999999977777743356777777776663
No 64
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.04 E-value=2.3e-06 Score=65.47 Aligned_cols=63 Identities=21% Similarity=0.321 Sum_probs=51.2
Q ss_pred CccEEECCCCcccc-------------------------------cCchhhhcCCCCCeeecCCCcCCCCCCCcc--ccc
Q 046778 1 MIESLDLSRNKLSG-------------------------------RIPPQLTELNFLSNFNVSYNNLSGPIPDKE--QFA 47 (147)
Q Consensus 1 ~L~~LdLs~N~LsG-------------------------------~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~--~~~ 47 (147)
+|+.|||++|++++ .+|..+..+++|+.||+++|+++ .+|... .+.
T Consensus 223 ~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~ 301 (353)
T 2z80_A 223 SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLT 301 (353)
T ss_dssp TEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCT
T ss_pred cccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCC
Confidence 36778888888877 46777889999999999999999 788764 577
Q ss_pred cCCccccccccCCcCCC
Q 046778 48 TFDDRSYKGNSALCGSM 64 (147)
Q Consensus 48 ~~~~~~~~gn~~lcg~~ 64 (147)
++..+.+.+|+..|..+
T Consensus 302 ~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 302 SLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp TCCEEECCSSCBCCCHH
T ss_pred CCCEEEeeCCCccCcCC
Confidence 88888899998888653
No 65
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.04 E-value=4.4e-06 Score=65.60 Aligned_cols=41 Identities=24% Similarity=0.237 Sum_probs=19.9
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~ 42 (147)
|+.|||++|++++..|..+..++.|+.|++++|++++..|.
T Consensus 301 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 341 (455)
T 3v47_A 301 LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSR 341 (455)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG
T ss_pred CCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChh
Confidence 44455555555544444444445555555555544444343
No 66
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.04 E-value=4.7e-06 Score=57.12 Aligned_cols=56 Identities=16% Similarity=0.168 Sum_probs=37.5
Q ss_pred CccEEECCCCccc-ccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCccccccc
Q 046778 1 MIESLDLSRNKLS-GRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGN 57 (147)
Q Consensus 1 ~L~~LdLs~N~Ls-G~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn 57 (147)
+|+.|+|++|+++ |.+|..+..++.|+.|++++|++++. +.-..+..+..+.+.+|
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N 81 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSEN 81 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESC
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCC
Confidence 3677888888887 77887777777777777777777765 22224455555555554
No 67
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.03 E-value=3.5e-06 Score=68.55 Aligned_cols=56 Identities=25% Similarity=0.125 Sum_probs=32.3
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN 57 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn 57 (147)
|+.|||++|++++.+|..+..++.|+.|++++|++++.+|..+ .+.++..+.+.+|
T Consensus 475 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 531 (606)
T 3vq2_A 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN 531 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS
T ss_pred CCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC
Confidence 5556666666666666666666666666666666666555544 3444555555554
No 68
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.02 E-value=7.9e-06 Score=60.42 Aligned_cols=57 Identities=18% Similarity=0.169 Sum_probs=37.4
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN 57 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn 57 (147)
+|++|||++|++++..|..++.++.|+.|++++|++++..|..+ .+.++..+.+.+|
T Consensus 110 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 167 (272)
T 3rfs_A 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN 167 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC
Confidence 36677777777776666667777777777777777776555443 3455555555555
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.99 E-value=2.4e-06 Score=64.42 Aligned_cols=56 Identities=16% Similarity=0.148 Sum_probs=40.3
Q ss_pred CccEEECCCCcccccCchhh--hcCCCCCeeecCCCcCCCCCCCcc-cc-----ccCCccccccc
Q 046778 1 MIESLDLSRNKLSGRIPPQL--TELNFLSNFNVSYNNLSGPIPDKE-QF-----ATFDDRSYKGN 57 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~--~~l~~L~~l~ls~N~l~G~iP~~~-~~-----~~~~~~~~~gn 57 (147)
+|++|||++|+++|.+|..+ +.+++|+.|++++|++++. |..+ .+ .++..+.+.+|
T Consensus 96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N 159 (312)
T 1wwl_A 96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQA 159 (312)
T ss_dssp CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESC
T ss_pred CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCC
Confidence 36788888888888888876 7788888888888888877 6543 22 55555555555
No 70
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.97 E-value=1.1e-05 Score=61.03 Aligned_cols=56 Identities=21% Similarity=0.287 Sum_probs=31.8
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN 57 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn 57 (147)
|+.|||++|++++..|..+..+++|+.|++++|++++..|..+ .+.++..+.+.+|
T Consensus 194 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 250 (330)
T 1xku_A 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250 (330)
T ss_dssp CSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC
Confidence 5566666666666666666666666666666666665555433 3344444444444
No 71
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.97 E-value=8.7e-06 Score=60.86 Aligned_cols=58 Identities=21% Similarity=0.275 Sum_probs=48.4
Q ss_pred CccEEECCCCcccc-cCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCcccccccc
Q 046778 1 MIESLDLSRNKLSG-RIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNS 58 (147)
Q Consensus 1 ~L~~LdLs~N~LsG-~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~ 58 (147)
+|+.|+|++|.+++ .+|..+..+++|+.|++++|++++..|..+ .+.++..+.+.+|.
T Consensus 151 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 210 (306)
T 2z66_A 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 210 (306)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred CCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc
Confidence 47899999999998 688889999999999999999999888765 56677777777764
No 72
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.96 E-value=7.1e-06 Score=63.18 Aligned_cols=56 Identities=20% Similarity=0.081 Sum_probs=29.9
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN 57 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn 57 (147)
|+.|+|++|++++..|..+..++.|+.|||++|+|++..|..+ .+..+..+.+.+|
T Consensus 66 L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 122 (361)
T 2xot_A 66 LHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN 122 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCC
Confidence 5556666666665555556666666666666666655444332 3344444444444
No 73
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.96 E-value=7.2e-06 Score=63.17 Aligned_cols=58 Identities=19% Similarity=0.113 Sum_probs=48.8
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCcccccccc
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNS 58 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~ 58 (147)
+|++|||++|+|++..|..+..++.|+.|+|++|++++..|..+ .+.++..+.+.+|.
T Consensus 89 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~ 147 (361)
T 2xot_A 89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ 147 (361)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc
Confidence 48899999999998888889999999999999999998878765 56677777776663
No 74
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.96 E-value=5.4e-06 Score=62.64 Aligned_cols=60 Identities=25% Similarity=0.345 Sum_probs=44.7
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcC
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCG 62 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg 62 (147)
+|+.|||++|++++ +|+.+..+++|+.|++++|++++ +|..+ .+.++..+.+.+|+..|+
T Consensus 192 ~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~ 252 (317)
T 3o53_A 192 KLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCG 252 (317)
T ss_dssp TCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHH
T ss_pred cCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCc
Confidence 46788888888886 45558888888888888888884 66655 456677777778877654
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.95 E-value=5.4e-06 Score=62.53 Aligned_cols=57 Identities=16% Similarity=0.141 Sum_probs=36.7
Q ss_pred CccEEECCCCcccccCchhhhcC-----CCCCeeecCCCcCCCCCCCcc-ccccCCcccccccc
Q 046778 1 MIESLDLSRNKLSGRIPPQLTEL-----NFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNS 58 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l-----~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~ 58 (147)
+|++|||++|++++. |..++.+ ++|++|++++|++++..|..+ .+.++..+.+.+|.
T Consensus 122 ~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 122 DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP 184 (312)
T ss_dssp CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCT
T ss_pred CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCC
Confidence 366777777777776 6666666 677777777777766665554 44555555555553
No 76
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.93 E-value=9e-06 Score=64.26 Aligned_cols=57 Identities=19% Similarity=0.168 Sum_probs=44.7
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN 57 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn 57 (147)
+|+.|||++|++++..|..+.++++|+.|++++|++++..|..+ .+.++..+.+.+|
T Consensus 219 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 276 (452)
T 3zyi_A 219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276 (452)
T ss_dssp TCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC
Confidence 46788888888888888888888888888888888888777665 4566666666666
No 77
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.92 E-value=1.3e-05 Score=68.98 Aligned_cols=53 Identities=28% Similarity=0.506 Sum_probs=30.4
Q ss_pred ccEEECCCCcccccCchhhh--cCCCCCeeecCCCcCCCCCCCcc-ccccCCcccccc
Q 046778 2 IESLDLSRNKLSGRIPPQLT--ELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKG 56 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~--~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~g 56 (147)
|+.|||++|+|+ .||..+. .+++|+.|++++|+++| +|..+ .+.++..+.+.+
T Consensus 730 L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 730 LTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRH 785 (876)
T ss_dssp CCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCC
T ss_pred ccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCC
Confidence 556666666666 5666655 56666666666666665 55544 344444444444
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.92 E-value=1.4e-05 Score=59.80 Aligned_cols=37 Identities=27% Similarity=0.267 Sum_probs=16.5
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSG 38 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G 38 (147)
|+.|+|++|++++..|..+..++.|+.|++++|++++
T Consensus 102 L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 138 (290)
T 1p9a_G 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138 (290)
T ss_dssp CCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC
T ss_pred CCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc
Confidence 3444444444444333444444444444444444443
No 79
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.91 E-value=9.3e-06 Score=61.51 Aligned_cols=55 Identities=20% Similarity=0.210 Sum_probs=25.7
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN 57 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn 57 (147)
|+.|||++|++++..|..+..++.|+.|++++|+++ .+|..+ .+..+..+.+.+|
T Consensus 219 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTN 274 (332)
T ss_dssp CSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSS
T ss_pred CCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCC
Confidence 344455555555444444555555555555555554 444433 3334444444444
No 80
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.89 E-value=1e-05 Score=61.36 Aligned_cols=55 Identities=16% Similarity=0.209 Sum_probs=29.9
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCcccccccc
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNS 58 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~ 58 (147)
|+.|++++|++++. +.+..+++|+.|++++|++++..|..+ .+.++..+.+.+|+
T Consensus 267 L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 267 LKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred cCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 55566666666553 235556666666666666655555443 34445555555553
No 81
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.88 E-value=1.9e-05 Score=59.70 Aligned_cols=56 Identities=20% Similarity=0.207 Sum_probs=35.3
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN 57 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn 57 (147)
|+.|||++|++++..|..+++++.|++|++++|++++..|..+ .+..+..+.+.+|
T Consensus 54 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 54 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 5667777777776666667777777777777777776666544 3444444444444
No 82
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.88 E-value=1.2e-05 Score=63.40 Aligned_cols=57 Identities=19% Similarity=0.203 Sum_probs=44.5
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN 57 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn 57 (147)
+|+.|||++|++++..|..+.++++|+.|++++|++++..|..+ .+.++..+.+.+|
T Consensus 208 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 265 (440)
T 3zyj_A 208 KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265 (440)
T ss_dssp SCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS
T ss_pred ccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC
Confidence 46788888888888888888888888888888888888777655 4566666666666
No 83
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.88 E-value=1.2e-05 Score=68.42 Aligned_cols=57 Identities=18% Similarity=0.203 Sum_probs=36.1
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCc--c-ccccCCccccccc
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDK--E-QFATFDDRSYKGN 57 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~--~-~~~~~~~~~~~gn 57 (147)
+|++|||++|++++..|..++++++|++|++++|++++.+|.. + .+.++..+.+.+|
T Consensus 74 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N 133 (844)
T 3j0a_A 74 NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN 133 (844)
T ss_dssp TCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC
T ss_pred CCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC
Confidence 3667777777777777777777777777777777777766553 2 3344444444444
No 84
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.87 E-value=2.1e-05 Score=58.28 Aligned_cols=40 Identities=23% Similarity=0.203 Sum_probs=19.4
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIP 41 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP 41 (147)
|+.|+|++|++++..|..+..+++|+.|++++|++++..|
T Consensus 107 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 146 (285)
T 1ozn_A 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD 146 (285)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH
Confidence 4445555555554444444445555555555555544333
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.87 E-value=1.1e-05 Score=60.59 Aligned_cols=54 Identities=31% Similarity=0.503 Sum_probs=44.4
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCC-CCCCccccccCCccccccccC
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSG-PIPDKEQFATFDDRSYKGNSA 59 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G-~iP~~~~~~~~~~~~~~gn~~ 59 (147)
+|++|||++|+++ .+|..+. ++|+.||+++|+++| ++|. .+..+..+.+.+|+.
T Consensus 252 ~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~~~--~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 252 ALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQPD--ELPEVDNLTLDGNPF 306 (310)
T ss_dssp TCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCCTT--SCCCCSCEECSSTTT
T ss_pred cCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCchhh--hCCCccEEECcCCCC
Confidence 4789999999999 8999875 899999999999998 4543 456777777777753
No 86
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.86 E-value=1.2e-05 Score=65.30 Aligned_cols=42 Identities=17% Similarity=0.081 Sum_probs=22.1
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCc
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDK 43 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~ 43 (147)
|++|||++|++++..|..++++++|++|++++|++++..|..
T Consensus 59 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 100 (606)
T 3t6q_A 59 LTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETA 100 (606)
T ss_dssp CSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTT
T ss_pred ceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhh
Confidence 445555555555555555555555555555555555544443
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.84 E-value=1.6e-05 Score=58.56 Aligned_cols=35 Identities=23% Similarity=0.172 Sum_probs=13.8
Q ss_pred cEEECCCCcccccCchhhhcCCCCCeeecCCCcCC
Q 046778 3 ESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLS 37 (147)
Q Consensus 3 ~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~ 37 (147)
+.|||++|++++..|..+.+++.|+.|++++|+++
T Consensus 31 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 65 (276)
T 2z62_A 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ 65 (276)
T ss_dssp CEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC
T ss_pred cEEECCCCcccccCHhHhccccCCcEEECCCCcCC
Confidence 33444444444333333333444444444444333
No 88
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.84 E-value=5.9e-06 Score=66.35 Aligned_cols=41 Identities=10% Similarity=0.002 Sum_probs=20.3
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~ 42 (147)
|+.|+|++|++++..|..++.++.|+.|++++|+++|.+|.
T Consensus 122 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (487)
T 3oja_A 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (487)
T ss_dssp CEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG
T ss_pred CCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH
Confidence 34444555555554444455555555555555555554443
No 89
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.84 E-value=8.9e-06 Score=65.06 Aligned_cols=55 Identities=16% Similarity=0.074 Sum_probs=33.7
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCcccccccc
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNS 58 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~ 58 (147)
|++|||++|++++..|..+++++.|++||+++|+++ .+|.. .+.++..+.+.+|.
T Consensus 47 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-~l~~L~~L~L~~N~ 101 (520)
T 2z7x_B 47 LRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH-PTVNLKHLDLSFNA 101 (520)
T ss_dssp CCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC-CCCCCSEEECCSSC
T ss_pred ccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc-ccCCccEEeccCCc
Confidence 566666666666666666666666666666666666 45554 44555555555553
No 90
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.83 E-value=2.6e-05 Score=57.47 Aligned_cols=35 Identities=26% Similarity=0.288 Sum_probs=13.4
Q ss_pred cEEECCCCcccccCchhhhcCCCCCeeecCCCcCC
Q 046778 3 ESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLS 37 (147)
Q Consensus 3 ~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~ 37 (147)
++|||++|++++..|..+..++.|++|++++|+++
T Consensus 55 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 55 QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp SEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred cEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence 33334433333333333333333333333333333
No 91
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.83 E-value=1.6e-05 Score=64.41 Aligned_cols=41 Identities=24% Similarity=0.231 Sum_probs=19.8
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~ 42 (147)
|+.|||++|++++..|..+.+++.|++|++++|++++..|.
T Consensus 54 L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 94 (562)
T 3a79_B 54 TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFH 94 (562)
T ss_dssp CCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTT
T ss_pred cCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHH
Confidence 34455555555444444444445555555555544444443
No 92
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.83 E-value=1.2e-05 Score=55.73 Aligned_cols=35 Identities=23% Similarity=0.202 Sum_probs=16.0
Q ss_pred ccEEECCCCcccccCchhhhcCC-CCCeeecCCCcCCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELN-FLSNFNVSYNNLSG 38 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~-~L~~l~ls~N~l~G 38 (147)
|+.|+|++|+++ .+|. +..+. +|+.||+++|++++
T Consensus 21 L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~ 56 (176)
T 1a9n_A 21 DRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRK 56 (176)
T ss_dssp CEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCE
T ss_pred ceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCc
Confidence 344555555555 2333 22222 55555555555544
No 93
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.82 E-value=1.6e-05 Score=63.89 Aligned_cols=56 Identities=18% Similarity=0.191 Sum_probs=30.9
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN 57 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn 57 (147)
|++|||++|++++..|..+++++.|++||+++|++++..|..+ .+.++..+.+.+|
T Consensus 52 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 108 (549)
T 2z81_A 52 LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108 (549)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC
T ss_pred ccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCC
Confidence 4555666666665555556666666666666666655554433 3444444455554
No 94
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.81 E-value=3e-05 Score=57.15 Aligned_cols=41 Identities=24% Similarity=0.274 Sum_probs=20.5
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~ 42 (147)
|++|||++|++++..|..+..+++|+.|++++|++++..|.
T Consensus 87 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 127 (270)
T 2o6q_A 87 LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPR 127 (270)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred CCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHH
Confidence 44555555555544444444555555555555555544443
No 95
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.81 E-value=1.3e-05 Score=64.47 Aligned_cols=56 Identities=14% Similarity=0.129 Sum_probs=28.3
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCC-CCCCCcc-ccccCCccccccc
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLS-GPIPDKE-QFATFDDRSYKGN 57 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~-G~iP~~~-~~~~~~~~~~~gn 57 (147)
|+.||+++|.+++.+|..+..+++|+.|++++|+++ |.+|..+ .+.++..+.+.+|
T Consensus 423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n 480 (570)
T 2z63_A 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480 (570)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC
Confidence 455555555555555555555555555555555554 4455433 2333444333333
No 96
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.77 E-value=2.1e-05 Score=59.60 Aligned_cols=40 Identities=30% Similarity=0.350 Sum_probs=22.7
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~ 42 (147)
|++|||++|++++..|..+++++.|+.|++++|+++ .+|.
T Consensus 80 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~ 119 (332)
T 2ft3_A 80 LYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPP 119 (332)
T ss_dssp CCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCS
T ss_pred CcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCc
Confidence 455555555555555555555555666666655555 4444
No 97
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.75 E-value=2.5e-05 Score=61.80 Aligned_cols=41 Identities=20% Similarity=0.311 Sum_probs=21.1
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~ 42 (147)
++.|||++|++++..|..+.+++.|++|++++|++++..|.
T Consensus 34 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~ 74 (477)
T 2id5_A 34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG 74 (477)
T ss_dssp CSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT
T ss_pred CcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChh
Confidence 34455555555555455555555555555555555544444
No 98
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.74 E-value=3.7e-05 Score=62.97 Aligned_cols=56 Identities=11% Similarity=0.093 Sum_probs=31.9
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN 57 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn 57 (147)
|+.|||++|++++..|..++.++.|+.|++++|.+++..|..+ .+..+..+.+.+|
T Consensus 77 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 133 (597)
T 3oja_B 77 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 133 (597)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC
Confidence 5566666666666655566666666666666666666555443 3444444444444
No 99
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.73 E-value=3.9e-05 Score=63.26 Aligned_cols=41 Identities=20% Similarity=0.194 Sum_probs=19.7
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~ 42 (147)
|++|||++|++++..|..++++++|++||+++|++++..|.
T Consensus 99 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 139 (680)
T 1ziw_A 99 LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 139 (680)
T ss_dssp CSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC
T ss_pred CCEEECCCCccCccChhHccccCCCCEEECCCCcccccCch
Confidence 44444444444444444444455555555555555444443
No 100
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.71 E-value=3.4e-05 Score=58.88 Aligned_cols=56 Identities=21% Similarity=0.271 Sum_probs=33.5
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN 57 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn 57 (147)
|+.|||++|++++..|..+.+++.|++||+++|++++..+..+ .+.++..+.+.+|
T Consensus 78 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 134 (353)
T 2z80_A 78 LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN 134 (353)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC
T ss_pred CCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC
Confidence 5666666666666666666666777777777776664333212 3445555555555
No 101
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.70 E-value=1.3e-05 Score=60.44 Aligned_cols=56 Identities=29% Similarity=0.298 Sum_probs=42.2
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCccccccc
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGN 57 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn 57 (147)
+|++|||++|++++..|..+..++.|+.|++++|++++..|- ..+..+..+.+.+|
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDL-ESLSTLRTLDLNNN 90 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEE-TTCTTCCEEECCSS
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhh-hhcCCCCEEECcCC
Confidence 378899999999998888899999999999999999876651 13444555444444
No 102
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.69 E-value=5.4e-05 Score=58.45 Aligned_cols=41 Identities=12% Similarity=0.173 Sum_probs=21.8
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~ 42 (147)
|+.|||++|++++..|..+..++.|++|++++|++++..|.
T Consensus 71 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 111 (390)
T 3o6n_A 71 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH 111 (390)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHH
Confidence 45555555555554444555555555555555555554444
No 103
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.69 E-value=4.5e-05 Score=62.42 Aligned_cols=37 Identities=22% Similarity=0.280 Sum_probs=22.4
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSG 38 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G 38 (147)
|+.|||++|.+++..|..+++++.|+.|++++|++++
T Consensus 101 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 137 (597)
T 3oja_B 101 IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 137 (597)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC
Confidence 5566666666666555555666666666666666654
No 104
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.67 E-value=3.3e-05 Score=59.67 Aligned_cols=55 Identities=20% Similarity=0.182 Sum_probs=33.7
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN 57 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn 57 (147)
|+.|||++|.+++..|..+..++.|+.|++++|++++. |... .+.++..+.+.+|
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n 305 (390)
T 3o6n_A 250 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHN 305 (390)
T ss_dssp CSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSS
T ss_pred ccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCC
Confidence 56677777777776677777777777777777766653 3222 3444555555554
No 105
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.67 E-value=1.2e-05 Score=64.05 Aligned_cols=40 Identities=33% Similarity=0.436 Sum_probs=30.1
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCC--CCCCcc
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSG--PIPDKE 44 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G--~iP~~~ 44 (147)
+|+.|||++|+++ .+|. .+++|+.|++++|+++| .+|.++
T Consensus 338 ~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l 379 (454)
T 1jl5_A 338 RLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESV 379 (454)
T ss_dssp TCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTC
T ss_pred cCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHH
Confidence 3677888888887 4776 46788888888888888 777665
No 106
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.64 E-value=2.7e-05 Score=56.22 Aligned_cols=37 Identities=19% Similarity=0.280 Sum_probs=18.0
Q ss_pred ccEEECCC-CcccccCchhhhcCCCCCeeecCCCcCCC
Q 046778 2 IESLDLSR-NKLSGRIPPQLTELNFLSNFNVSYNNLSG 38 (147)
Q Consensus 2 L~~LdLs~-N~LsG~iP~~~~~l~~L~~l~ls~N~l~G 38 (147)
|++|||++ |++++..|..+.+++.|+.|++++|++++
T Consensus 82 L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~ 119 (239)
T 2xwt_C 82 VTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM 119 (239)
T ss_dssp CCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS
T ss_pred CcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc
Confidence 44455554 45544433444445555555555555544
No 107
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.62 E-value=8.1e-06 Score=57.58 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=16.0
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLS 37 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~ 37 (147)
|+.|||++|++++ +| .+..++.|+.|++++|+++
T Consensus 50 L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~ 83 (198)
T 1ds9_A 50 CKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK 83 (198)
T ss_dssp CSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC
T ss_pred CCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc
Confidence 3444444444444 44 4444444444444444444
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.56 E-value=7.2e-05 Score=61.47 Aligned_cols=36 Identities=28% Similarity=0.513 Sum_probs=19.6
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~ 42 (147)
|+.|||++|+|++ ||. .+++|+.|++++|++++ +|.
T Consensus 122 L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~ 157 (571)
T 3cvr_A 122 LKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE 157 (571)
T ss_dssp CCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC
T ss_pred CCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC
Confidence 4555555555555 444 44555566666665555 444
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.53 E-value=9.3e-05 Score=60.81 Aligned_cols=49 Identities=20% Similarity=0.317 Sum_probs=28.7
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCccccccc
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGN 57 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn 57 (147)
|+.|||++|+|++ ||. .+++|+.|++++|+|++ +|. +. .++..+.+.+|
T Consensus 142 L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~-~~L~~L~Ls~N 190 (571)
T 3cvr_A 142 LEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP-ESLEALDVSTN 190 (571)
T ss_dssp CCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC-TTCCEEECCSS
T ss_pred ccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh-CCCCEEECcCC
Confidence 5666666666665 555 45666666666666666 555 32 44444444444
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.53 E-value=0.00012 Score=53.94 Aligned_cols=35 Identities=34% Similarity=0.539 Sum_probs=23.4
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSG 38 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G 38 (147)
|+.|||++|++++..| +..++.|+.|++++|++++
T Consensus 65 L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~ 99 (263)
T 1xeu_A 65 LKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN 99 (263)
T ss_dssp CCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC
T ss_pred CCEEECCCCccCCChh--hccCCCCCEEECCCCccCC
Confidence 5667777777766433 6667777777777777666
No 111
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.52 E-value=1.4e-05 Score=56.27 Aligned_cols=55 Identities=24% Similarity=0.326 Sum_probs=46.5
Q ss_pred ccEEECCCCcccccCch------hhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCcccccccc
Q 046778 2 IESLDLSRNKLSGRIPP------QLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNS 58 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~------~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~ 58 (147)
+..++++.|+|+|.+|. .+..++.|+.|++++|++++ +| .+ .+..+..+.+.+|.
T Consensus 20 l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~ 81 (198)
T 1ds9_A 20 VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNL 81 (198)
T ss_dssp CCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEE
T ss_pred ccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCC
Confidence 56789999999999998 99999999999999999999 78 44 56677777776663
No 112
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.50 E-value=1.7e-05 Score=59.83 Aligned_cols=56 Identities=20% Similarity=0.258 Sum_probs=33.8
Q ss_pred ccEEECCCCccccc-CchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778 2 IESLDLSRNKLSGR-IPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN 57 (147)
Q Consensus 2 L~~LdLs~N~LsG~-iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn 57 (147)
|++|||++|++++. +|..+..+++|+.|++++|++++.+|..+ .+.++..+.+.+|
T Consensus 95 L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 95 VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp CCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred CCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence 56666666666665 66666666666666666666666555443 3444555555554
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.50 E-value=7e-05 Score=61.89 Aligned_cols=53 Identities=25% Similarity=0.346 Sum_probs=28.9
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCccccccc
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGN 57 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn 57 (147)
|+.|||++|++++..| +..++.|+.|+|++|++++. |.-..+..+..+.+.+|
T Consensus 155 L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 155 LDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQ 207 (605)
T ss_dssp CSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEECCSE
T ss_pred CCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-hHHccCCCCCEEEccCC
Confidence 5566666666665544 55666666666666666552 32223444454455544
No 114
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.50 E-value=7.4e-05 Score=55.88 Aligned_cols=38 Identities=32% Similarity=0.475 Sum_probs=21.2
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIP 41 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP 41 (147)
|+.|||++|++++. ..+..+++|+.|++++|++++..|
T Consensus 136 L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~ 173 (291)
T 1h6t_A 136 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 173 (291)
T ss_dssp CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred CCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh
Confidence 55566666666553 345555556666666665555443
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.50 E-value=0.00011 Score=54.09 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=18.1
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSG 38 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G 38 (147)
|+.|||++|++++ +| .+..+++|+.|++++|++++
T Consensus 108 L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~ 142 (263)
T 1xeu_A 108 LSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS 142 (263)
T ss_dssp CCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB
T ss_pred ccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC
Confidence 4555555555554 22 35555555555555555544
No 116
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.46 E-value=6.9e-05 Score=57.33 Aligned_cols=43 Identities=16% Similarity=0.098 Sum_probs=36.7
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCc
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDK 43 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~ 43 (147)
++++|||++|+++.--+..|.++++|+.|+|++|++.+.+|..
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~ 73 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD 73 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTT
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChh
Confidence 4789999999999544456899999999999999999988864
No 117
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.42 E-value=9.5e-05 Score=53.32 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=20.6
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCc
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNN 35 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~ 35 (147)
|+.|||++|++++..|..+.+++.|+.|++++|+
T Consensus 33 l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~ 66 (239)
T 2xwt_C 33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV 66 (239)
T ss_dssp CCEEEEESCCCSEECTTTTTTCTTCCEEEEECCS
T ss_pred ccEEEEeCCcceEECHHHccCCCCCcEEeCCCCC
Confidence 4556666666665555556666666666666664
No 118
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.41 E-value=0.00014 Score=57.91 Aligned_cols=54 Identities=24% Similarity=0.314 Sum_probs=41.2
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCccccccccCCc
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSALC 61 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~~lc 61 (147)
+|+.||+++|++++ +|.. ++.|+.|++++|+++ .+|. ...++..+.+.+|...+
T Consensus 318 ~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~--~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 318 SLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE--LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC--CCTTCCEEECCSSCCSS
T ss_pred cCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc--hhhhccEEECCCCCCCc
Confidence 47788999999887 7775 588999999999998 4777 35667777777775433
No 119
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.40 E-value=0.00017 Score=59.77 Aligned_cols=51 Identities=24% Similarity=0.367 Sum_probs=23.1
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN 57 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn 57 (147)
|+.|||++|+|+ .||. .+++|+.|++++|+++ .+|..+ .+.++..+.+.+|
T Consensus 243 L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 243 LKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN 294 (622)
T ss_dssp CCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSC
T ss_pred CcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCC
Confidence 344444444444 2333 3344555555555555 445433 3344444444444
No 120
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.36 E-value=0.00021 Score=53.32 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=18.2
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSG 38 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G 38 (147)
|+.|||++|++++. +.+..++.|+.|++++|++++
T Consensus 114 L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~ 148 (291)
T 1h6t_A 114 LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD 148 (291)
T ss_dssp CCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC
T ss_pred CCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCc
Confidence 45555555555542 334555555555555555554
No 121
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.35 E-value=0.00028 Score=56.09 Aligned_cols=39 Identities=36% Similarity=0.372 Sum_probs=28.6
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCC
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~ 42 (147)
+|+.|||++|+++| +| ++.++.|+.|++++|+++|..+.
T Consensus 213 ~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~ 251 (457)
T 3bz5_A 213 QLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVS 251 (457)
T ss_dssp TCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCT
T ss_pred CCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHH
Confidence 36777888888877 66 67777888888888888775443
No 122
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.33 E-value=0.00038 Score=46.25 Aligned_cols=60 Identities=17% Similarity=0.233 Sum_probs=46.1
Q ss_pred cEEECCCCccc-ccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcCCC
Q 046778 3 ESLDLSRNKLS-GRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCGSM 64 (147)
Q Consensus 3 ~~LdLs~N~Ls-G~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg~~ 64 (147)
..+|.++++|+ -.||..+. .+|+.|||++|+|+.--+..+ .+..+..+.+.||+..|...
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 36889999997 57887644 468999999999987444443 46677788899999998653
No 123
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.33 E-value=0.00021 Score=59.04 Aligned_cols=54 Identities=24% Similarity=0.349 Sum_probs=36.0
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCccccccc
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGN 57 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn 57 (147)
+|+.|+|++|+|++. ..+..+++|+.|+|++|++++..| -..+..+..+.+.+|
T Consensus 132 ~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 132 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKN 185 (605)
T ss_dssp TCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred ccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCC
Confidence 366777777777764 557777777788888887777666 224555666666555
No 124
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.27 E-value=5.1e-05 Score=58.58 Aligned_cols=21 Identities=14% Similarity=0.099 Sum_probs=7.9
Q ss_pred CchhhhcCCCCCeeecCCCcC
Q 046778 16 IPPQLTELNFLSNFNVSYNNL 36 (147)
Q Consensus 16 iP~~~~~l~~L~~l~ls~N~l 36 (147)
+|..+..+++|+.|++++|++
T Consensus 236 l~~~l~~~~~L~~L~L~~n~i 256 (386)
T 2ca6_A 236 LAIALKSWPNLRELGLNDCLL 256 (386)
T ss_dssp HHHHGGGCTTCCEEECTTCCC
T ss_pred HHHHHccCCCcCEEECCCCCC
Confidence 333333333333333333333
No 125
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.25 E-value=0.0001 Score=61.19 Aligned_cols=43 Identities=30% Similarity=0.332 Sum_probs=40.2
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE 44 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~ 44 (147)
+|+.|||++|+|+ .||..+.++++|+.|++++|.++|.+|..+
T Consensus 262 ~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 262 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHH
T ss_pred cCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHH
Confidence 4889999999999 899999999999999999999999998855
No 126
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.22 E-value=0.00036 Score=52.46 Aligned_cols=35 Identities=26% Similarity=0.459 Sum_probs=16.0
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSG 38 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G 38 (147)
|+.|||++|++++. |. +..++.|+.|++++|++++
T Consensus 65 L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~ 99 (308)
T 1h6u_A 65 LIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN 99 (308)
T ss_dssp CCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC
T ss_pred CCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC
Confidence 44455555544432 22 4444444444444444443
No 127
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.22 E-value=0.00012 Score=56.47 Aligned_cols=17 Identities=18% Similarity=0.114 Sum_probs=8.2
Q ss_pred cCCCCCeeecCCCcCCC
Q 046778 22 ELNFLSNFNVSYNNLSG 38 (147)
Q Consensus 22 ~l~~L~~l~ls~N~l~G 38 (147)
.++.|+.|++++|++++
T Consensus 92 ~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 92 KCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp TCTTCCEEECCSCCCCT
T ss_pred hCCcccEEECCCCcCCH
Confidence 44444444444444444
No 128
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.21 E-value=0.00011 Score=56.42 Aligned_cols=40 Identities=30% Similarity=0.310 Sum_probs=17.6
Q ss_pred ccEEECCCCcccccCchhhhcC-----CCCCeeecCCCcCCCCCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTEL-----NFLSNFNVSYNNLSGPIP 41 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l-----~~L~~l~ls~N~l~G~iP 41 (147)
|++|||++|++++..+..+..+ +.|+.||+++|++++..|
T Consensus 53 L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 53 VTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred eeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence 3444444444444444444433 444444444444444333
No 129
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.20 E-value=0.00036 Score=55.21 Aligned_cols=38 Identities=29% Similarity=0.553 Sum_probs=19.9
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIP 41 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP 41 (147)
|+.|||++|++++..| ++.+++|+.|++++|++++..|
T Consensus 289 L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~ 326 (466)
T 1o6v_A 289 LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 326 (466)
T ss_dssp CSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG
T ss_pred cCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh
Confidence 4455555555554322 4555555555555555555444
No 130
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.18 E-value=0.00022 Score=53.88 Aligned_cols=55 Identities=18% Similarity=0.259 Sum_probs=36.1
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCcccccccc
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNS 58 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~ 58 (147)
+|+.||+++|++++. +.+..+++|+.|++++|++++. |.-..+.++..+.+.+|.
T Consensus 244 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~ 298 (347)
T 4fmz_A 244 QLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQ 298 (347)
T ss_dssp TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC
T ss_pred CCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCc
Confidence 367788888877763 4577777888888888877764 432245556665665553
No 131
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.18 E-value=0.00016 Score=55.38 Aligned_cols=58 Identities=28% Similarity=0.249 Sum_probs=43.4
Q ss_pred CccEEECCCCcccccCc----hhhhcCC-CCCeeecCCCcCCCCCCCcc-cc-----ccCCcccccccc
Q 046778 1 MIESLDLSRNKLSGRIP----PQLTELN-FLSNFNVSYNNLSGPIPDKE-QF-----ATFDDRSYKGNS 58 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP----~~~~~l~-~L~~l~ls~N~l~G~iP~~~-~~-----~~~~~~~~~gn~ 58 (147)
+|++|||++|++++.-+ ..+..++ .|++|++++|++++..|..+ .. ..+..+.+.+|.
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 91 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF 91 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc
Confidence 37889999999988777 6677788 89999999999988877554 21 556666666653
No 132
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.18 E-value=0.00032 Score=55.51 Aligned_cols=35 Identities=26% Similarity=0.291 Sum_probs=17.3
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSG 38 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G 38 (147)
|+.|||++|++++..| +..++.|+.|++++|++++
T Consensus 311 L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 345 (466)
T 1o6v_A 311 LTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD 345 (466)
T ss_dssp CSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred CCEEECcCCcCCCchh--hccCccCCEeECCCCccCC
Confidence 4555555555555443 3444444444444444444
No 133
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.14 E-value=0.00021 Score=53.78 Aligned_cols=20 Identities=10% Similarity=0.110 Sum_probs=8.4
Q ss_pred CchhhhcCCCCCeeecCCCc
Q 046778 16 IPPQLTELNFLSNFNVSYNN 35 (147)
Q Consensus 16 iP~~~~~l~~L~~l~ls~N~ 35 (147)
+|..+..+++|+.|++++|.
T Consensus 214 l~~~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 214 LSTLVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp HHHHHHHCTTCSEEECTTCT
T ss_pred HHHHHhhCCCCCEEeCCCCC
Confidence 33334444444444444443
No 134
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.14 E-value=0.00047 Score=51.78 Aligned_cols=18 Identities=28% Similarity=0.432 Sum_probs=7.2
Q ss_pred hhcCCCCCeeecCCCcCC
Q 046778 20 LTELNFLSNFNVSYNNLS 37 (147)
Q Consensus 20 ~~~l~~L~~l~ls~N~l~ 37 (147)
+..+++|+.|++++|+++
T Consensus 169 l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 169 LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp GTTCTTCCEEECCSSCCC
T ss_pred hcCCCCCCEEECCCCccC
Confidence 333344444444444433
No 135
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.10 E-value=0.00042 Score=51.73 Aligned_cols=40 Identities=25% Similarity=0.361 Sum_probs=34.6
Q ss_pred CccEEECCCCcccccCchhhhcCC--CCCeeecCCCcCCCCCCC
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELN--FLSNFNVSYNNLSGPIPD 42 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~--~L~~l~ls~N~l~G~iP~ 42 (147)
+|+.|||++|++++. .++..+. .|++|+|++|.+++.+|.
T Consensus 197 ~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 197 NLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp TCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred CCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCc
Confidence 488999999999986 4456666 999999999999999985
No 136
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=96.94 E-value=0.0006 Score=54.19 Aligned_cols=40 Identities=20% Similarity=0.121 Sum_probs=22.9
Q ss_pred ccEEECCCCcccccCchhhhcCC-------CCCeeecCCCcCCCCCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELN-------FLSNFNVSYNNLSGPIP 41 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~-------~L~~l~ls~N~l~G~iP 41 (147)
|+.||+++|+++|..+..+.++. .|+.+++++|++.|.+|
T Consensus 235 L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~ 281 (457)
T 3bz5_A 235 LTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ 281 (457)
T ss_dssp CSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE
T ss_pred CCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc
Confidence 56677777777765544444443 34455555555555555
No 137
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.89 E-value=0.0011 Score=44.06 Aligned_cols=37 Identities=24% Similarity=0.203 Sum_probs=32.0
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCC
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLS 37 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~ 37 (147)
+|+.|||++|+|+.--+..|..++.|+.|+|++|.+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4789999999999766666889999999999999663
No 138
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=96.79 E-value=0.00021 Score=56.03 Aligned_cols=57 Identities=16% Similarity=0.092 Sum_probs=36.5
Q ss_pred CccEEECCCCccccc----CchhhhcCCCCCeeecCCCcCCCCCCCccc------cccCCccccccc
Q 046778 1 MIESLDLSRNKLSGR----IPPQLTELNFLSNFNVSYNNLSGPIPDKEQ------FATFDDRSYKGN 57 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~----iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~------~~~~~~~~~~gn 57 (147)
+|+.|+|++|++++. +|..+..+++|+.||+++|++++..+..+. ..++..+.+.+|
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC
Confidence 367788888888776 566667777888888888877665443221 234555555554
No 139
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=96.34 E-value=0.0013 Score=51.38 Aligned_cols=58 Identities=14% Similarity=0.164 Sum_probs=45.7
Q ss_pred CccEEECCCCcccccCchhhhc-----CCCCCeeecCCCcCCC----CCCCcc-ccccCCcccccccc
Q 046778 1 MIESLDLSRNKLSGRIPPQLTE-----LNFLSNFNVSYNNLSG----PIPDKE-QFATFDDRSYKGNS 58 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~-----l~~L~~l~ls~N~l~G----~iP~~~-~~~~~~~~~~~gn~ 58 (147)
+|+.|||++|++++..+..+.. .+.|+.|++++|++++ .+|..+ ...++..+.+.+|.
T Consensus 342 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 342 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp SCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred CccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 4789999999999887776664 6799999999999986 777665 45677777777774
No 140
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.31 E-value=0.0043 Score=47.22 Aligned_cols=40 Identities=18% Similarity=0.326 Sum_probs=27.5
Q ss_pred ccEEECCCCcccccCchh-hhcCCCCCeeecCCCcCCCCCCC
Q 046778 2 IESLDLSRNKLSGRIPPQ-LTELNFLSNFNVSYNNLSGPIPD 42 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~-~~~l~~L~~l~ls~N~l~G~iP~ 42 (147)
|+.|++++|+.-+.||.. +..+++|+.||+++|+|+. +|.
T Consensus 179 L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~-lp~ 219 (350)
T 4ay9_X 179 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS-LPS 219 (350)
T ss_dssp EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC-CCS
T ss_pred hhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc-cCh
Confidence 566777766666667654 5777888888888888774 444
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=96.17 E-value=0.00072 Score=54.56 Aligned_cols=58 Identities=9% Similarity=-0.069 Sum_probs=38.9
Q ss_pred CccEEECCCCcccc-cCchhhhcCCCCCeeecCCCcCCCCCCCcc--ccccCCcccccccc
Q 046778 1 MIESLDLSRNKLSG-RIPPQLTELNFLSNFNVSYNNLSGPIPDKE--QFATFDDRSYKGNS 58 (147)
Q Consensus 1 ~L~~LdLs~N~LsG-~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~--~~~~~~~~~~~gn~ 58 (147)
+|+.|+|++|++++ .+|..+..+++|+.|++++|++++..+... .+.++..+.+.+|.
T Consensus 464 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 464 NVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp TCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred cceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 36778888888877 456666777888888888888765533222 35566666666664
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.03 E-value=0.0013 Score=51.04 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=18.0
Q ss_pred ccEEECCCCcccc----cCchhhhcCCCCCeeecCCCcCC
Q 046778 2 IESLDLSRNKLSG----RIPPQLTELNFLSNFNVSYNNLS 37 (147)
Q Consensus 2 L~~LdLs~N~LsG----~iP~~~~~l~~L~~l~ls~N~l~ 37 (147)
|+.|||++|+++. .++..+..+++|++|||++|+++
T Consensus 157 L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 157 ITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG 196 (372)
T ss_dssp CCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred cceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence 4555555555543 23333344555555555555544
No 143
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=95.63 E-value=0.0016 Score=52.53 Aligned_cols=58 Identities=10% Similarity=-0.003 Sum_probs=37.5
Q ss_pred CccEEECCCCcccccCchhh-hcCCCCCeeecCCCcCCCCCCCcc--ccccCCcccccccc
Q 046778 1 MIESLDLSRNKLSGRIPPQL-TELNFLSNFNVSYNNLSGPIPDKE--QFATFDDRSYKGNS 58 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~-~~l~~L~~l~ls~N~l~G~iP~~~--~~~~~~~~~~~gn~ 58 (147)
+|+.|+|++|.+++..+..+ ..+++|+.|++++|.+++..+... .+.++..+.+.+|+
T Consensus 457 ~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 457 KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp TCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred hccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCC
Confidence 36778888888877666555 567888888888887754433322 34556655555553
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=95.18 E-value=0.0071 Score=48.73 Aligned_cols=39 Identities=23% Similarity=0.184 Sum_probs=33.8
Q ss_pred CccEEECCCCccccc-CchhhhcCCCCCeeecCCCcCCCC
Q 046778 1 MIESLDLSRNKLSGR-IPPQLTELNFLSNFNVSYNNLSGP 39 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~-iP~~~~~l~~L~~l~ls~N~l~G~ 39 (147)
+|+.|||++|.+++. ++..+..+++|+.|++++|++++.
T Consensus 489 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 489 NLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp TCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred ccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 489999999999877 555567899999999999998876
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=95.16 E-value=0.0096 Score=46.08 Aligned_cols=58 Identities=19% Similarity=0.243 Sum_probs=42.3
Q ss_pred CccEEECCCCccccc----CchhhhcCCCCCeeecCCCcCCCCCC----Ccc-ccccCCcccccccc
Q 046778 1 MIESLDLSRNKLSGR----IPPQLTELNFLSNFNVSYNNLSGPIP----DKE-QFATFDDRSYKGNS 58 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~----iP~~~~~l~~L~~l~ls~N~l~G~iP----~~~-~~~~~~~~~~~gn~ 58 (147)
+|++|||++|+++.. ++..+...++|+.|||++|+++..-. ..+ ...++..+.+.+|.
T Consensus 184 ~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 184 SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp SCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred CcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 478999999999864 46677788899999999999875322 211 23566666777764
No 146
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=94.96 E-value=0.0088 Score=46.30 Aligned_cols=57 Identities=14% Similarity=0.113 Sum_probs=37.2
Q ss_pred CccEEECCCCcccccCchhhh---cCCCCCeeecCCCcCCCC----CCCcc-ccccCCccccccc
Q 046778 1 MIESLDLSRNKLSGRIPPQLT---ELNFLSNFNVSYNNLSGP----IPDKE-QFATFDDRSYKGN 57 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~---~l~~L~~l~ls~N~l~G~----iP~~~-~~~~~~~~~~~gn 57 (147)
+|+.|+|++|.++...+..+. .++.|+.|||++|++++. ++..+ .+.++..+.+.+|
T Consensus 253 ~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 253 NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp TCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 477888888888876655554 467888888888888764 33332 3455555555444
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=94.63 E-value=0.018 Score=40.01 Aligned_cols=36 Identities=11% Similarity=0.244 Sum_probs=20.7
Q ss_pred ccEEECCCC-ccccc----CchhhhcCCCCCeeecCCCcCC
Q 046778 2 IESLDLSRN-KLSGR----IPPQLTELNFLSNFNVSYNNLS 37 (147)
Q Consensus 2 L~~LdLs~N-~LsG~----iP~~~~~l~~L~~l~ls~N~l~ 37 (147)
|++|||++| +++.. +...+...++|++|||++|++.
T Consensus 38 L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 38 LEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp CCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred CCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 566666666 66543 3333444566666666666654
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=94.52 E-value=0.025 Score=39.24 Aligned_cols=39 Identities=21% Similarity=0.312 Sum_probs=30.9
Q ss_pred CccEEECCCCccccc----CchhhhcCCCCCeeecCCCcCCCC
Q 046778 1 MIESLDLSRNKLSGR----IPPQLTELNFLSNFNVSYNNLSGP 39 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~----iP~~~~~l~~L~~l~ls~N~l~G~ 39 (147)
+|++|||++|+++.. +...+...++|++|||++|+++..
T Consensus 66 ~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 66 YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred CcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 478999999999764 455566678999999999988653
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=93.80 E-value=0.0095 Score=46.10 Aligned_cols=18 Identities=6% Similarity=-0.049 Sum_probs=12.4
Q ss_pred cCCCCCeeecCCCcCCCC
Q 046778 22 ELNFLSNFNVSYNNLSGP 39 (147)
Q Consensus 22 ~l~~L~~l~ls~N~l~G~ 39 (147)
.+++|+.|++++|++.+.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~ 267 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNV 267 (362)
T ss_dssp TCTTCCEEEEESCTTHHH
T ss_pred CCCCcCEEeCCCCCCchH
Confidence 366777778777776643
No 150
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=93.39 E-value=0.012 Score=47.30 Aligned_cols=57 Identities=11% Similarity=0.077 Sum_probs=36.6
Q ss_pred CccEEECCCCcccccCchhhhc-CCCCCeeecCCCcCCCCCCCcc--ccccCCcccccccc
Q 046778 1 MIESLDLSRNKLSGRIPPQLTE-LNFLSNFNVSYNNLSGPIPDKE--QFATFDDRSYKGNS 58 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~-l~~L~~l~ls~N~l~G~iP~~~--~~~~~~~~~~~gn~ 58 (147)
+|+.|||++ ++++..+..++. +++|+.|++++|.+++..+..+ .+.++..+.+.+|+
T Consensus 433 ~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~ 492 (594)
T 2p1m_B 433 DLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP 492 (594)
T ss_dssp TCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCS
T ss_pred CccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCC
Confidence 366777765 666666666665 7788888888887766544332 34556666666654
No 151
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=89.66 E-value=0.48 Score=24.42 Aligned_cols=20 Identities=10% Similarity=-0.159 Sum_probs=8.5
Q ss_pred hhhhhhhHHHHHHHHHHHHH
Q 046778 98 WSFGASYVSVILGLFAALWI 117 (147)
Q Consensus 98 ~~~~~~~~v~~~~~~~~~~~ 117 (147)
.++.++.++++.+++.+.++
T Consensus 14 AGiVvG~v~gv~li~~l~~~ 33 (38)
T 2k1k_A 14 VAVIFGLLLGAALLLGILVF 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHHHH
Confidence 33444444444434443333
No 152
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=88.19 E-value=0.3 Score=34.59 Aligned_cols=36 Identities=8% Similarity=0.295 Sum_probs=16.5
Q ss_pred ccEEECCCC-ccccc----CchhhhcCCCCCeeecCCCcCC
Q 046778 2 IESLDLSRN-KLSGR----IPPQLTELNFLSNFNVSYNNLS 37 (147)
Q Consensus 2 L~~LdLs~N-~LsG~----iP~~~~~l~~L~~l~ls~N~l~ 37 (147)
|++|||++| ++... |-..+..-+.|+.|+|++|++.
T Consensus 43 L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 43 LKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS 83 (197)
T ss_dssp CCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred ccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC
Confidence 455566553 44321 2222333445555555555543
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=88.14 E-value=0.33 Score=33.73 Aligned_cols=35 Identities=9% Similarity=0.170 Sum_probs=29.0
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCc
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNN 35 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~ 35 (147)
.|+.||||++.++-.=-..+..++.|+.|+|+++.
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence 47899999998877645567889999999999974
No 154
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=87.76 E-value=0.61 Score=34.75 Aligned_cols=41 Identities=20% Similarity=0.285 Sum_probs=31.9
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCc
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDK 43 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~ 43 (147)
+|+.|||++|+++---+..|.++++|+.+++++| ++ .|+..
T Consensus 227 ~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~ 267 (329)
T 3sb4_A 227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQR 267 (329)
T ss_dssp TCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECTT
T ss_pred CCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehHH
Confidence 4789999999998655556899999999999998 33 35543
No 155
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=78.24 E-value=3.2 Score=20.77 Aligned_cols=23 Identities=13% Similarity=0.018 Sum_probs=12.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhh
Q 046778 97 RWSFGASYVSVILGLFAALWINS 119 (147)
Q Consensus 97 ~~~~~~~~~v~~~~~~~~~~~~~ 119 (147)
.+.+.+++++.++++...+.+++
T Consensus 9 alt~i~gl~vif~~lg~tflywr 31 (40)
T 2l9u_A 9 ALTVIAGLVVIFMMLGGTFLYWR 31 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCceeEEEc
Confidence 34455566666666555555533
No 156
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=75.84 E-value=1.6 Score=30.72 Aligned_cols=38 Identities=24% Similarity=0.246 Sum_probs=29.6
Q ss_pred CccEEECCCCccccc----CchhhhcCCCCCeeecCCCcCCC
Q 046778 1 MIESLDLSRNKLSGR----IPPQLTELNFLSNFNVSYNNLSG 38 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~----iP~~~~~l~~L~~l~ls~N~l~G 38 (147)
.|+.|+|++|++.-. |-..+..=++|+.|+|+.|++..
T Consensus 71 ~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 71 HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 478999999999854 33334456889999999999864
No 157
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=74.47 E-value=2 Score=31.88 Aligned_cols=36 Identities=14% Similarity=0.120 Sum_probs=26.0
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCC
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLS 37 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~ 37 (147)
+|+.|+|++ +++--=+..|.++++|+.+++++|++.
T Consensus 102 ~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~ 137 (329)
T 3sb4_A 102 TLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP 137 (329)
T ss_dssp TCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC
T ss_pred CCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc
Confidence 467778877 776544456888888888888888765
No 158
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=68.74 E-value=2.1 Score=24.74 Aligned_cols=16 Identities=6% Similarity=0.042 Sum_probs=5.9
Q ss_pred hhhhhHHHHHHHHHHH
Q 046778 100 FGASYVSVILGLFAAL 115 (147)
Q Consensus 100 ~~~~~~v~~~~~~~~~ 115 (147)
++.++.+.+++.++++
T Consensus 14 lGg~~~lll~~glcI~ 29 (70)
T 2klu_A 14 LGGVAGLLLFIGLGIF 29 (70)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHH
Confidence 3333333333333333
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=67.22 E-value=1.7 Score=30.10 Aligned_cols=34 Identities=12% Similarity=0.223 Sum_probs=22.2
Q ss_pred CccEEECCCC-cccccCchhhhcC----CCCCeeecCCC
Q 046778 1 MIESLDLSRN-KLSGRIPPQLTEL----NFLSNFNVSYN 34 (147)
Q Consensus 1 ~L~~LdLs~N-~LsG~iP~~~~~l----~~L~~l~ls~N 34 (147)
+|+.|+|+++ +++..==..++.+ ++|++||++++
T Consensus 86 ~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C 124 (176)
T 3e4g_A 86 YVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISC 124 (176)
T ss_dssp CCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESC
T ss_pred CCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCC
Confidence 4778888886 4665444445554 36888888875
No 160
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=47.32 E-value=24 Score=27.11 Aligned_cols=35 Identities=9% Similarity=0.066 Sum_probs=20.2
Q ss_pred ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCC
Q 046778 2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLS 37 (147)
Q Consensus 2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~ 37 (147)
|+.++|.. +++---+..|.++++|+.++++.|+++
T Consensus 159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~ 193 (401)
T 4fdw_A 159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT 193 (401)
T ss_dssp CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS
T ss_pred ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce
Confidence 44555553 444333345666777777777776554
No 161
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=38.32 E-value=37 Score=16.59 Aligned_cols=17 Identities=6% Similarity=0.049 Sum_probs=6.3
Q ss_pred hhhhhHHHHHHHHHHHH
Q 046778 100 FGASYVSVILGLFAALW 116 (147)
Q Consensus 100 ~~~~~~v~~~~~~~~~~ 116 (147)
+.++-+++.+++.+.++
T Consensus 12 IVvgdi~~t~~i~~~vy 28 (33)
T 2l34_A 12 IVVGDLVLTVLIALAVY 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred EeHHHHHHHHHHHHHHh
Confidence 33333333333333333
No 162
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=37.95 E-value=40 Score=16.86 Aligned_cols=10 Identities=20% Similarity=0.066 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 046778 108 ILGLFAALWI 117 (147)
Q Consensus 108 ~~~~~~~~~~ 117 (147)
..++++.+.+
T Consensus 17 iaIVVWtiv~ 26 (36)
T 1pi7_A 17 IAIVVWSIVI 26 (36)
T ss_pred HHHHHHHHHH
Confidence 3344444444
No 163
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=28.85 E-value=61 Score=21.18 Aligned_cols=24 Identities=13% Similarity=-0.006 Sum_probs=11.5
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHh
Q 046778 95 ALRWSFGASYVSVILGLFAALWIN 118 (147)
Q Consensus 95 ~~~~~~~~~~~v~~~~~~~~~~~~ 118 (147)
.+.+.+.+++..++++.+++-+++
T Consensus 53 ylYIL~vmgffgff~~GImLsYiR 76 (138)
T 2k21_A 53 ALYVLMVLGFFGFFTLGIMLSYIR 76 (138)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHHHHHHhH
Confidence 344444555544444444444443
No 164
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=25.51 E-value=88 Score=23.86 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=17.3
Q ss_pred CccEEECCCCcccccCchhhhcCCCCCeeecC
Q 046778 1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVS 32 (147)
Q Consensus 1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls 32 (147)
+|+.++|+.|+++- ||...-..+.|+.+++.
T Consensus 181 ~L~~l~l~~n~l~~-I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 181 NLKKADLSKTKITK-LPASTFVYAGIEEVLLP 211 (401)
T ss_dssp TCCEEECTTSCCSE-ECTTTTTTCCCSEEECC
T ss_pred cCCeeecCCCcceE-echhhEeecccCEEEeC
Confidence 47788888877764 33322223455555554
No 165
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=22.55 E-value=73 Score=23.58 Aligned_cols=16 Identities=6% Similarity=0.023 Sum_probs=8.3
Q ss_pred hhcCCCCCeeecCCCc
Q 046778 20 LTELNFLSNFNVSYNN 35 (147)
Q Consensus 20 ~~~l~~L~~l~ls~N~ 35 (147)
+.++++|+.+++.++.
T Consensus 282 F~~c~~L~~i~l~~~~ 297 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSA 297 (379)
T ss_dssp TTTCTTCCEEEECCTT
T ss_pred cccccccccccccccc
Confidence 4445555555555443
No 166
>1hgv_A PH75 inovirus major coat protein; virus coat protein, helical virus coat protein, ssDNA viruses, filamentous bacteriophage, thermophiles; 2.4A {Bacteriophage PH75} SCOP: h.1.4.1 PDB: 1hgz_A 1hh0_A
Probab=21.48 E-value=94 Score=15.82 Aligned_cols=15 Identities=20% Similarity=-0.117 Sum_probs=6.0
Q ss_pred hhhhhhhHHHHHHHH
Q 046778 98 WSFGASYVSVILGLF 112 (147)
Q Consensus 98 ~~~~~~~~v~~~~~~ 112 (147)
+.+.++..++++++.
T Consensus 16 i~~iaaagvgvlal~ 30 (46)
T 1hgv_A 16 IQAIAAAGVGVLALA 30 (46)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHccchHHHHH
Confidence 333334444444333
Done!