BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046779
(183 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QYC|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYC|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 308
Score = 224 bits (571), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 113/203 (55%), Positives = 142/203 (69%), Gaps = 25/203 (12%)
Query: 5 QRFFPSEFGNDVDRVHAVELARTSFATKAKIRRAVEAERIPYTYVASNFFAGLYLS---- 60
+RFFPSEFGNDVD VHAVE A++ F KAK+RRA+EAE IPYTYV+SN FAG +L
Sbjct: 107 KRFFPSEFGNDVDNVHAVEPAKSVFEVKAKVRRAIEAEGIPYTYVSSNCFAGYFLRSLAQ 166
Query: 61 --------------------IIFNKEDDIGINSIKAVDDPRTLNKILYIRPRCNIYSFND 100
++F KE+DIG +IKAVDDPRTLNK LY+R N S N+
Sbjct: 167 AGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDPRTLNKTLYLRLPANTLSLNE 226
Query: 101 LVSLWEEKIGKALDRVYVTEEQLLKNIQEASYPLNMILPIGHSAYVLGDQTNFEIEPSFG 160
LV+LWE+KI K L++ YV EE++LK I + +P N+ + I HS +V GDQTNFEI P+ G
Sbjct: 227 LVALWEKKIDKTLEKAYVPEEEVLKLIADTPFPANISIAISHSIFVKGDQTNFEIGPA-G 285
Query: 161 VEATELYPDVNYTTVDEYLNQFI 183
VEA++LYPDV YTTVDEYL+ F+
Sbjct: 286 VEASQLYPDVKYTTVDEYLSNFV 308
>pdb|2GAS|A Chain A, Crystal Structure Of Isoflavone Reductase
pdb|2GAS|B Chain B, Crystal Structure Of Isoflavone Reductase
Length = 307
Score = 179 bits (453), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 92/203 (45%), Positives = 129/203 (63%), Gaps = 25/203 (12%)
Query: 5 QRFFPSEFGNDVDRVHAVELARTSFATKAKIRRAVEAERIPYTYVASNFFAGLYLSII-- 62
++FFPSEFG DVDR AVE R F KA IRR +EAE +PYTY+ + F G +L +
Sbjct: 106 KKFFPSEFGLDVDRHDAVEPVRQVFEEKASIRRVIEAEGVPYTYLCCHAFTGYFLRNLAQ 165
Query: 63 ----------------------FNKEDDIGINSIKAVDDPRTLNKILYIRPRCNIYSFND 100
+ E D+G +I+A +DP TLNK ++IR N + N+
Sbjct: 166 LDATDPPRDKVVILGDGNVKGAYVTEADVGTFTIRAANDPNTLNKAVHIRLPKNYLTQNE 225
Query: 101 LVSLWEEKIGKALDRVYVTEEQLLKNIQEASYPLNMILPIGHSAYVLGDQTNFEIEPSFG 160
+++LWE+KIGK L++ YV+EEQ+LK+IQE+S+P N +L + HS + GD +EI+P+
Sbjct: 226 VIALWEKKIGKTLEKTYVSEEQVLKDIQESSFPHNYLLALYHSQQIKGDAV-YEIDPAKD 284
Query: 161 VEATELYPDVNYTTVDEYLNQFI 183
+EA+E YPDV YTT DEYLNQF+
Sbjct: 285 IEASEAYPDVTYTTADEYLNQFV 307
>pdb|1QYD|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|C Chain C, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|D Chain D, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 313
Score = 149 bits (375), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 121/205 (59%), Gaps = 27/205 (13%)
Query: 5 QRFFPSEFGNDVDRV-HAVELARTSFATKAKIRRAVEAERIPYTYVASNFFAGLY----- 58
+RF PSEFG D D + HA++ +F K K+RRA+EA IPYTYV+SN FAG +
Sbjct: 110 KRFLPSEFGMDPDIMEHALQPGSITFIDKRKVRRAIEAASIPYTYVSSNMFAGYFAGSLA 169
Query: 59 --------------------LSIIFNKEDDIGINSIKAVDDPRTLNKILYIRPRCNIYSF 98
+ I+ EDD+G +IK++DDP+TLNK +YIRP NI S
Sbjct: 170 QLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQTLNKTMYIRPPMNILSQ 229
Query: 99 NDLVSLWEEKIGKALDRVYVTEEQLLKNIQEASYPLNMILPIGHSAYVLGDQTNFEIEPS 158
+++ +WE + LD++Y++ + L ++++ SY ++ + + GD NFEI P+
Sbjct: 230 KEVIQIWERLSEQNLDKIYISSQDFLADMKDKSYEEKIVRCHLYQIFFRGDLYNFEIGPN 289
Query: 159 FGVEATELYPDVNYTTVDEYLNQFI 183
+EAT+LYP+V Y T+D YL +++
Sbjct: 290 -AIEATKLYPEVKYVTMDSYLERYV 313
>pdb|3I52|A Chain A, Ternary Complex Structure Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I5M|A Chain A, Structure Of The Apo Form Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I6I|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase - Nadph From Vitis Vinifera
pdb|3I6Q|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase-Nadph From Vitis Vinifera
Length = 346
Score = 133 bits (334), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 109/203 (53%), Gaps = 24/203 (11%)
Query: 5 QRFFPSEFGNDVDRVHAVELARTSFATKAKIRRAVEAERIPYTYVASN------FFAGLY 58
+RF PSEFG+DV+R VE + K ++R+ VE IP+TY+ N ++ ++
Sbjct: 113 KRFLPSEFGHDVNRADPVEPGLNMYREKRRVRQLVEESGIPFTYICCNSIASWPYYNNIH 172
Query: 59 LSIIFNKED------------------DIGINSIKAVDDPRTLNKILYIRPRCNIYSFND 100
S + D DIG ++K VDD RTLNK ++ RP CN + N+
Sbjct: 173 PSEVLPPTDFFQIYGDGNVKAYFVAGTDIGKFTMKTVDDVRTLNKSVHFRPSCNCLNINE 232
Query: 101 LVSLWEEKIGKALDRVYVTEEQLLKNIQEASYPLNMILPIGHSAYVLGDQTNFEIEPSFG 160
L S+WE+KIG+ L RV VTE+ LL E P +++ H ++ G Q NF I+
Sbjct: 233 LASVWEKKIGRTLPRVTVTEDDLLAAAGENIIPQSVVAAFTHDIFIKGCQVNFSIDGPED 292
Query: 161 VEATELYPDVNYTTVDEYLNQFI 183
VE T LYP+ ++ TV+E ++I
Sbjct: 293 VEVTTLYPEDSFRTVEECFGEYI 315
>pdb|3C1O|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 321
Score = 128 bits (322), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 112/203 (55%), Gaps = 25/203 (12%)
Query: 5 QRFFPSEFGNDVDRVHAVELARTSFATKAKIRRAVEAERIPYTYVASNFFAGLYLS---- 60
+RF PS+FG + DR+ + + K IRRA+EA +PYTYV++N F +++
Sbjct: 107 KRFLPSDFGCEEDRIKPLPPFESVLEKKRIIRRAIEAAALPYTYVSANCFGAYFVNYLLH 166
Query: 61 --------------------IIFNKEDDIGINSIKAVDDPRTLNKILYIRPRCNIYSFND 100
+ N E+DI +IK DPR N+I+ RP NI S N+
Sbjct: 167 PSPHPNRNDDIVIYGTGETKFVLNYEEDIAKYTIKVACDPRCCNRIVIYRPPKNIISQNE 226
Query: 101 LVSLWEEKIGKALDRVYVTEEQLLKNIQEASYPLNMILPIGHSAYVLGDQTNFEIEPSFG 160
L+SLWE K G + +V++ +EQL++ QE P N+ + I HS +V GD ++E+
Sbjct: 227 LISLWEAKSGLSFKKVHMPDEQLVRLSQELPQPQNIPVSILHSIFVKGDLMSYEMRKD-D 285
Query: 161 VEATELYPDVNYTTVDEYLNQFI 183
+EA+ LYP++ +T++D L+ FI
Sbjct: 286 IEASNLYPELEFTSIDGLLDLFI 308
>pdb|2QW8|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QW8|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 314
Score = 114 bits (286), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 114/200 (57%), Gaps = 22/200 (11%)
Query: 5 QRFFPSEFGNDVDRVHAVELARTSFATKAKIRRAVEAERIPYTYVASNFFAGLYLSIIF- 63
+RF PS+FG + DR++A+ K IRRA+E IPYTYV++N FA +++ +
Sbjct: 105 KRFLPSDFGVEEDRINALPPFEALIERKRMIRRAIEEANIPYTYVSANCFASYFINYLLR 164
Query: 64 --------------------NKEDDIGINSIKAVDDPRTLNKILYIRPRCNIYSFNDLVS 103
N E DIG+ +IK DPR LN+++ RP NI + +L+S
Sbjct: 165 PYDPKDEITVYGTGEAKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELIS 224
Query: 104 LWEEKIGKALDRVYVTEEQLLKNIQEASYPLNMILPIGHSAYVLGDQTNFEIEPSFGVEA 163
WE+KIGK +++V EE+++ +E P N+ + I H ++ G +++ + + VEA
Sbjct: 225 RWEKKIGKKFKKIHVPEEEIVALTKELPEPENIPIAILHCLFIDGATMSYDFKEN-DVEA 283
Query: 164 TELYPDVNYTTVDEYLNQFI 183
+ LYP++ +TT+DE L+ F+
Sbjct: 284 STLYPELKFTTIDELLDIFV 303
>pdb|2QX7|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QX7|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 318
Score = 114 bits (286), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 114/200 (57%), Gaps = 22/200 (11%)
Query: 5 QRFFPSEFGNDVDRVHAVELARTSFATKAKIRRAVEAERIPYTYVASNFFAGLYLSIIF- 63
+RF PS+FG + DR++A+ K IRRA+E IPYTYV++N FA +++ +
Sbjct: 109 KRFLPSDFGVEEDRINALPPFEALIERKRMIRRAIEEANIPYTYVSANCFASYFINYLLR 168
Query: 64 --------------------NKEDDIGINSIKAVDDPRTLNKILYIRPRCNIYSFNDLVS 103
N E DIG+ +IK DPR LN+++ RP NI + +L+S
Sbjct: 169 PYDPKDEITVYGTGEAKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELIS 228
Query: 104 LWEEKIGKALDRVYVTEEQLLKNIQEASYPLNMILPIGHSAYVLGDQTNFEIEPSFGVEA 163
WE+KIGK +++V EE+++ +E P N+ + I H ++ G +++ + + VEA
Sbjct: 229 RWEKKIGKKFKKIHVPEEEIVALTKELPEPENIPIAILHCLFIDGATMSYDFKEN-DVEA 287
Query: 164 TELYPDVNYTTVDEYLNQFI 183
+ LYP++ +TT+DE L+ F+
Sbjct: 288 STLYPELKFTTIDELLDIFV 307
>pdb|3C3X|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
pdb|3C3X|B Chain B, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 318
Score = 114 bits (285), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 114/200 (57%), Gaps = 22/200 (11%)
Query: 5 QRFFPSEFGNDVDRVHAVELARTSFATKAKIRRAVEAERIPYTYVASNFFAGLYLSIIF- 63
+RF PS+FG + DR++A+ K IRRA+E IPYTYV++N FA +++ +
Sbjct: 109 KRFLPSDFGVEEDRINALPPFEALIERKRMIRRAIEEANIPYTYVSANCFASYFINYLLR 168
Query: 64 --------------------NKEDDIGINSIKAVDDPRTLNKILYIRPRCNIYSFNDLVS 103
N E DIG+ +IK DPR LN+++ RP NI + +L+S
Sbjct: 169 PYDPKDEITVYGTGEAKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELIS 228
Query: 104 LWEEKIGKALDRVYVTEEQLLKNIQEASYPLNMILPIGHSAYVLGDQTNFEIEPSFGVEA 163
WE+KIGK +++V EE+++ +E P N+ + I H ++ G +++ + + VEA
Sbjct: 229 RWEKKIGKKFKKIHVPEEEIVALTKELPEPENIPIAILHCLFIDGATMSYDFKEN-DVEA 287
Query: 164 TELYPDVNYTTVDEYLNQFI 183
+ LYP++ +TT+DE L+ F+
Sbjct: 288 STLYPELKFTTIDELLDIFV 307
>pdb|2R2G|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
pdb|2R2G|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
Length = 318
Score = 113 bits (282), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 114/200 (57%), Gaps = 22/200 (11%)
Query: 5 QRFFPSEFGNDVDRVHAVELARTSFATKAKIRRAVEAERIPYTYVASNFFAGLYLSIIF- 63
+RF PS+FG + DR++A+ + IRRA+E IPYTYV++N FA +++ +
Sbjct: 109 KRFLPSDFGVEEDRINALPPFEALIERQRMIRRAIEEANIPYTYVSANCFASYFINYLLR 168
Query: 64 --------------------NKEDDIGINSIKAVDDPRTLNKILYIRPRCNIYSFNDLVS 103
N E DIG+ +IK DPR LN+++ RP NI + +L+S
Sbjct: 169 PYDPKDEITVYGTGEAKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELIS 228
Query: 104 LWEEKIGKALDRVYVTEEQLLKNIQEASYPLNMILPIGHSAYVLGDQTNFEIEPSFGVEA 163
WE+KIGK +++V EE+++ +E P N+ + I H ++ G +++ + + VEA
Sbjct: 229 RWEKKIGKKFKKIHVPEEEIVALTKELPEPENIPIAILHCLFIDGATMSYDFKEN-DVEA 287
Query: 164 TELYPDVNYTTVDEYLNQFI 183
+ LYP++ +TT+DE L+ F+
Sbjct: 288 STLYPELKFTTIDELLDIFV 307
>pdb|1YKW|A Chain A, Crystal Structure Of A Novel Rubisco-Like Protein From The
Green Sulfur Bacterium Chlorobium Tepidum
pdb|1YKW|B Chain B, Crystal Structure Of A Novel Rubisco-Like Protein From The
Green Sulfur Bacterium Chlorobium Tepidum
Length = 435
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 114 DRVYVTEEQLLKNIQEASYPLNMILPI----GHSAYVLGDQTNFE 154
DRV EE++L+N+ E + P+ I P G S L QT +E
Sbjct: 326 DRVMTPEEEVLENVIECTKPMGRIKPCLPVPGGSDSALTLQTVYE 370
>pdb|1JII|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb-219383
pdb|1JIJ|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb-239629
pdb|1JIK|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb-243545
pdb|1JIL|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb284485
Length = 420
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 110 GKALDRVYVTEEQLLKNIQEASYPLNMILPIG--HSAYVL 147
GK+ +RV TEEQ+ KNI+ S ++ I G H A ++
Sbjct: 83 GKSEERVLQTEEQVDKNIEGISKQMHNIFEFGTDHGAVLV 122
>pdb|4II2|A Chain A, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
pdb|4II3|A Chain A, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
pdb|4II3|C Chain C, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
Length = 1001
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 6 RFFPSEFGNDVDRVHAVELARTSFATKAKIRRAVEAERIPYTYVASNFFAGLYLSIIFNK 65
R P+EF D D H ++ F T A RA+ + P + F AG + +
Sbjct: 793 RLTPAEFEKDDDSNHHID-----FITAASNLRAMNYDITPADRFKTKFVAGKIVPAMCTS 847
Query: 66 ----EDDIGINSIKAVDDPRTLN--KILYIRPRCNIYSFNDLVSLWEEKI-GKALDRVY 117
+ + +K VD + + K + +++F+D ++ + K+ GK +D+++
Sbjct: 848 TAVVSGLVCLELVKLVDGKKKIEEYKNGFFNLAIGLFTFSDPIASPKMKVNGKEIDKIW 906
>pdb|4G1B|A Chain A, X-Ray Structure Of Yeast Flavohemoglobin In Complex With
Econazole
pdb|4G1B|B Chain B, X-Ray Structure Of Yeast Flavohemoglobin In Complex With
Econazole
pdb|4G1B|C Chain C, X-Ray Structure Of Yeast Flavohemoglobin In Complex With
Econazole
pdb|4G1B|D Chain D, X-Ray Structure Of Yeast Flavohemoglobin In Complex With
Econazole
pdb|4G1V|A Chain A, X-Ray Structure Of Yeast Flavohemoglobin
Length = 399
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 100 DLVSLWEEKIGKALDRVYVTEEQLLKNIQEASYPLNMILPIGHSAYVLGDQTNFEIEPSF 159
++++ W E +A+ +++T E+ K +EA +P I YV D F ++P F
Sbjct: 117 EIINAWGEAY-QAIADIFITVEK--KMYEEALWPGWKPFEITAKEYVASDIVEFTVKPKF 173
Query: 160 G----VEATELYPDVNYTTVDEY 178
G +E+ + P Y TV+ +
Sbjct: 174 GSGIELESLPITPG-QYITVNTH 195
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,261,657
Number of Sequences: 62578
Number of extensions: 201028
Number of successful extensions: 471
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 441
Number of HSP's gapped (non-prelim): 16
length of query: 183
length of database: 14,973,337
effective HSP length: 93
effective length of query: 90
effective length of database: 9,153,583
effective search space: 823822470
effective search space used: 823822470
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)