BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046780
(290 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 118 bits (296), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 116/228 (50%), Gaps = 15/228 (6%)
Query: 67 IPILDLDGVNKDAISRAKIVKQVQNACQNWGFFQIVNHGIPVSILDEMIDGVIGFHEQDT 126
PI+ LD VN + RA + +++AC+NWGFF++VNHGIP + D + G +++
Sbjct: 4 FPIISLDKVN--GVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCX 61
Query: 127 EVKKKFYTRDYQKRMVLYNTNFDFYVAPEANWRDTLSCVMAP--NPPDPEELPEVCRDII 184
E + K V + +W T P N + +L E R++
Sbjct: 62 EQRFKELVASKALEGVQAEVT-------DXDWESTFFLKHLPISNISEVPDLDEEYREVX 114
Query: 185 VDYAKKTTELALTLFELISEALGLNANRLKDMDCAEGLFLLG---HYYPTCPEPELTMGT 241
D+AK+ +LA L +L+ E LGL LK+ G YP CP+P+L G
Sbjct: 115 RDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGL 174
Query: 242 DSHADSSFLTVLLQ-DRLGGLQVLHENEWVNVTPIYGALVVNLGDMMQ 288
+H D+ + +L Q D++ GLQ+L + +W++V P ++VVNLGD ++
Sbjct: 175 RAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLE 222
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 131/270 (48%), Gaps = 14/270 (5%)
Query: 33 VKGLVDAGITKIPRIFIHDQLKLSN------SRSGDSEFIIPILDLDGVNKDAIS-RAKI 85
V+ L +GI IP+ +I + +L + + +P +DL + D R
Sbjct: 6 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 65
Query: 86 VKQVQNACQNWGFFQIVNHGIPVSILDEMIDGVIGFHEQDTEVKKKFYTRDYQKRMVLYN 145
+++++ A +WG ++NHGIP +++ + F E K+K+ ++ Y
Sbjct: 66 IEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 125
Query: 146 TNFDFYVAPEANWRDTLSCVMAPNPP-DPEELPEVCRDII---VDYAKKTTELALTLFEL 201
+ + + W D + P D P+ D I +YAK LA +F+
Sbjct: 126 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKA 185
Query: 202 ISEALGLNANRL-KDMDCAEGLFLLG--HYYPTCPEPELTMGTDSHADSSFLTVLLQDRL 258
+S LGL +RL K++ E L L +YYP CP+PEL +G ++H D S LT +L + +
Sbjct: 186 LSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMV 245
Query: 259 GGLQVLHENEWVNVTPIYGALVVNLGDMMQ 288
GLQ+ +E +WV + ++V+++GD ++
Sbjct: 246 PGLQLFYEGKWVTAKCVPDSIVMHIGDTLE 275
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 131/270 (48%), Gaps = 14/270 (5%)
Query: 33 VKGLVDAGITKIPRIFIHDQLKLSN------SRSGDSEFIIPILDLDGVNKDAIS-RAKI 85
V+ L +GI IP+ +I + +L + + +P +DL + D R
Sbjct: 7 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 66
Query: 86 VKQVQNACQNWGFFQIVNHGIPVSILDEMIDGVIGFHEQDTEVKKKFYTRDYQKRMVLYN 145
+++++ A +WG ++NHGIP +++ + F E K+K+ ++ Y
Sbjct: 67 IEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 126
Query: 146 TNFDFYVAPEANWRDTLSCVMAPNPP-DPEELPEVCRDII---VDYAKKTTELALTLFEL 201
+ + + W D + P D P+ D I +YAK LA +F+
Sbjct: 127 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKA 186
Query: 202 ISEALGLNANRL-KDMDCAEGLFLLG--HYYPTCPEPELTMGTDSHADSSFLTVLLQDRL 258
+S LGL +RL K++ E L L +YYP CP+PEL +G ++H D S LT +L + +
Sbjct: 187 LSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMV 246
Query: 259 GGLQVLHENEWVNVTPIYGALVVNLGDMMQ 288
GLQ+ +E +WV + ++V+++GD ++
Sbjct: 247 PGLQLFYEGKWVTAKCVPDSIVMHIGDTLE 276
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 110 bits (276), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 129/270 (47%), Gaps = 14/270 (5%)
Query: 33 VKGLVDAGITKIPRIFIHDQLKLSN------SRSGDSEFIIPILDLDGVNKDAIS-RAKI 85
V+ L +GI IP+ +I + +L + + +P +DL + D R
Sbjct: 7 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 66
Query: 86 VKQVQNACQNWGFFQIVNHGIPVSILDEMIDGVIGFHEQDTEVKKKFYTRDYQKRMVLYN 145
+++++ A +WG ++NHGIP + + + F E K+K+ ++ Y
Sbjct: 67 IEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 126
Query: 146 TNFDFYVAPEANWRDTLSCVMAPNPP-DPEELPEVCRDII---VDYAKKTTELALTLFEL 201
+ + + W D + P D P+ D I +YAK LA +F+
Sbjct: 127 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKA 186
Query: 202 ISEALGLNANRL-KDMDCAEGLFLLG--HYYPTCPEPELTMGTDSHADSSFLTVLLQDRL 258
+S LGL +RL K++ E L L +YYP CP+PEL +G ++H D S LT +L + +
Sbjct: 187 LSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFILHNXV 246
Query: 259 GGLQVLHENEWVNVTPIYGALVVNLGDMMQ 288
GLQ+ +E +WV + ++V ++GD ++
Sbjct: 247 PGLQLFYEGKWVTAKCVPDSIVXHIGDTLE 276
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 89/225 (39%), Gaps = 29/225 (12%)
Query: 84 KIVKQVQNACQNWGFFQIVNHGIPVSILDEMIDGVIGFHEQDTEVKKKFY-----TRDYQ 138
+ +++ + + +GF + ++ + + +D +D F E KK++ R Y
Sbjct: 21 RFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYI 80
Query: 139 KRMVLYNTNFDFYVAPEANWRDTLSCVMAPNPPD------------PEELPEVCRDIIVD 186
V D Y E W PP P E+P D+
Sbjct: 81 PFGVETAKGADHYDLKEF-WHXGRDL-----PPGHRFRAHXADNVWPAEIPAFKHDVSWL 134
Query: 187 YAKKTTELALTLFELISEALGLNANRLKD--MDCAEGLFLLGHYYPTCPEPELTMGTDSH 244
Y + E I+ L L + K D L LL +YP P+ + +H
Sbjct: 135 Y-NSLDGXGGKVLEAIATYLKLERDFFKPTVQDGNSVLRLL--HYPPIPKDATGVRAGAH 191
Query: 245 ADSSFLTVLLQDRLGGLQVL-HENEWVNVTPIYGALVVNLGDMMQ 288
D + +T+LL GGL+VL + +W+ + P G LV+N+GD ++
Sbjct: 192 GDINTITLLLGAEEGGLEVLDRDGQWLPINPPPGCLVINIGDXLE 236
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 99/257 (38%), Gaps = 44/257 (17%)
Query: 67 IPILDLDGV-NKDAISRAKIVKQVQNACQNWGFFQIVNHGIPVSILDEMIDGVIGFH--- 122
+P +D+ + D ++ ++ +Q+ A ++ GFF VNHGI V L + FH
Sbjct: 9 VPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTK---EFHMSI 65
Query: 123 --EQDTEVKKKFYTRDYQKRMVLYNTNFDFYVAPEANWRDTLSCVMAPN--PPDPEELPE 178
E+ ++ + Y +++Q ++ +Y++ C + PN P P +
Sbjct: 66 TPEEKWDLAIRAYNKEHQDQV-----RAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAK 120
Query: 179 VCRDIIVDYAKKTTELALTLF--ELISEALGLNANRLKDMDCAEGL---FLLGHY----- 228
+ + +T F + + GL++ LK A G F H+
Sbjct: 121 TPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDT 180
Query: 229 --------YPTC-PEPELTMGTDS---------HADSSFLTVLLQDRLGGLQVLHENEWV 270
YP P PE + T + H D S +TVL Q + LQV +
Sbjct: 181 LASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQ 240
Query: 271 NVTPIYGALVVNLGDMM 287
++ ++N G M
Sbjct: 241 DIEADDTGYLINCGSYM 257
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 99/257 (38%), Gaps = 44/257 (17%)
Query: 67 IPILDLDGV-NKDAISRAKIVKQVQNACQNWGFFQIVNHGIPVSILDEMIDGVIGFH--- 122
+P +D+ + D ++ ++ +Q+ A ++ GFF VNHGI V L + FH
Sbjct: 9 VPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTK---EFHMSI 65
Query: 123 --EQDTEVKKKFYTRDYQKRMVLYNTNFDFYVAPEANWRDTLSCVMAPN--PPDPEELPE 178
E+ ++ + Y +++Q ++ +Y++ C + PN P P +
Sbjct: 66 TPEEKWDLAIRAYNKEHQDQV-----RAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAK 120
Query: 179 VCRDIIVDYAKKTTELALTLF--ELISEALGLNANRLKDMDCAEGL---FLLGHY----- 228
+ + +T F + + GL++ LK A G F H+
Sbjct: 121 TPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDT 180
Query: 229 --------YPTC-PEPELTMGTDS---------HADSSFLTVLLQDRLGGLQVLHENEWV 270
YP P PE + T + H D S +TVL Q + LQV +
Sbjct: 181 LASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQ 240
Query: 271 NVTPIYGALVVNLGDMM 287
++ ++N G M
Sbjct: 241 DIEADDTGYLINCGSYM 257
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 11/125 (8%)
Query: 176 LPEVCRDIIVDYAKKTTELALTLFELISEALGLNANRLK--------DMDCAEGLFLLGH 227
+P+ R I+ Y +K LA L E I E + + K + + L + H
Sbjct: 98 IPDSLRANILAYYEKANTLASELLEWI-ETYSPDEIKAKFSIPLPEXIANSHKTLLRILH 156
Query: 228 YYPTCPEPEL-TMGTDSHADSSFLTVLLQDRLGGLQV-LHENEWVNVTPIYGALVVNLGD 285
Y P + E + +H D + +TVL GLQV + W++V +G +++N+GD
Sbjct: 157 YPPXTGDEEXGAIRAAAHEDINLITVLPTANEPGLQVKAKDGSWLDVPSDFGNIIINIGD 216
Query: 286 MMQAS 290
+Q +
Sbjct: 217 XLQEA 221
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,154,291
Number of Sequences: 62578
Number of extensions: 389077
Number of successful extensions: 910
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 889
Number of HSP's gapped (non-prelim): 15
length of query: 290
length of database: 14,973,337
effective HSP length: 98
effective length of query: 192
effective length of database: 8,840,693
effective search space: 1697413056
effective search space used: 1697413056
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)