Query 046780
Match_columns 290
No_of_seqs 281 out of 1849
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 04:25:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046780.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046780hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02947 oxidoreductase 100.0 1E-64 2.2E-69 472.9 25.1 258 30-290 25-293 (374)
2 PLN02758 oxidoreductase, 2OG-F 100.0 2.6E-64 5.7E-69 469.0 24.4 260 29-290 13-281 (361)
3 PLN02904 oxidoreductase 100.0 6.2E-64 1.4E-68 465.6 24.4 263 25-290 8-276 (357)
4 PLN02216 protein SRG1 100.0 1.1E-63 2.3E-68 464.3 24.0 257 31-290 15-279 (357)
5 PLN02912 oxidoreductase, 2OG-F 100.0 1.3E-62 2.7E-67 455.7 23.3 258 29-290 4-265 (348)
6 PLN03178 leucoanthocyanidin di 100.0 3.2E-62 7E-67 455.3 23.5 260 31-290 6-279 (360)
7 PLN02393 leucoanthocyanidin di 100.0 8.5E-62 1.8E-66 452.6 23.9 263 26-290 8-282 (362)
8 PLN02639 oxidoreductase, 2OG-F 100.0 1.1E-61 2.4E-66 448.3 23.1 251 34-290 3-259 (337)
9 PLN02254 gibberellin 3-beta-di 100.0 6.7E-62 1.5E-66 451.8 21.5 244 37-290 23-279 (358)
10 PLN02276 gibberellin 20-oxidas 100.0 1.6E-61 3.4E-66 450.6 22.7 245 42-290 18-274 (361)
11 PLN02515 naringenin,2-oxogluta 100.0 2.5E-61 5.4E-66 448.1 23.1 249 40-290 11-265 (358)
12 PLN00417 oxidoreductase, 2OG-F 100.0 4.5E-60 9.8E-65 438.6 24.8 255 32-290 8-272 (348)
13 KOG0143 Iron/ascorbate family 100.0 3.3E-60 7.1E-65 434.2 22.6 225 63-290 14-246 (322)
14 PLN02704 flavonol synthase 100.0 4.8E-60 1E-64 437.0 23.6 254 32-290 5-267 (335)
15 PLN02750 oxidoreductase, 2OG-F 100.0 1.4E-58 3E-63 428.8 22.7 243 42-290 2-263 (345)
16 PTZ00273 oxidase reductase; Pr 100.0 8E-57 1.7E-61 413.7 21.4 227 63-290 2-247 (320)
17 PLN02997 flavonol synthase 100.0 1.4E-56 2.9E-61 411.6 21.9 216 64-290 30-251 (325)
18 COG3491 PcbC Isopenicillin N s 100.0 4.5E-56 9.8E-61 392.1 20.4 225 64-289 3-242 (322)
19 PLN02299 1-aminocyclopropane-1 100.0 3.6E-56 7.8E-61 408.4 20.1 218 63-290 3-227 (321)
20 PLN02984 oxidoreductase, 2OG-F 100.0 4.7E-55 1E-59 403.3 22.6 217 64-290 36-268 (341)
21 PLN03002 oxidoreductase, 2OG-F 100.0 3.8E-55 8.2E-60 403.8 21.4 220 63-290 11-256 (332)
22 PLN02485 oxidoreductase 100.0 5.3E-55 1.2E-59 402.9 21.9 224 65-289 6-257 (329)
23 PLN02156 gibberellin 2-beta-di 100.0 1.4E-54 3E-59 399.3 21.0 212 66-290 26-249 (335)
24 PLN02403 aminocyclopropanecarb 100.0 2E-54 4.3E-59 393.5 20.1 214 66-290 2-223 (303)
25 PLN02365 2-oxoglutarate-depend 100.0 2.8E-53 6.1E-58 386.4 19.5 208 64-290 3-220 (300)
26 PLN03001 oxidoreductase, 2OG-F 100.0 2.1E-43 4.6E-48 315.0 14.9 177 114-290 1-184 (262)
27 PF14226 DIOX_N: non-haem diox 99.9 1.2E-24 2.5E-29 171.3 8.3 95 67-167 1-96 (116)
28 PLN03176 flavanone-3-hydroxyla 99.9 4.8E-24 1E-28 168.6 11.3 112 33-148 6-117 (120)
29 PF03171 2OG-FeII_Oxy: 2OG-Fe( 99.6 1E-15 2.2E-20 116.7 3.2 66 222-290 2-69 (98)
30 PF13640 2OG-FeII_Oxy_3: 2OG-F 86.0 0.55 1.2E-05 35.0 2.1 55 224-284 1-76 (100)
31 smart00702 P4Hc Prolyl 4-hydro 78.1 12 0.00025 31.0 7.5 79 194-283 60-152 (178)
32 PF07350 DUF1479: Protein of u 68.2 4.2 9.2E-05 38.8 2.7 55 63-123 46-100 (416)
33 PRK08130 putative aldolase; Va 60.2 11 0.00024 32.5 3.7 36 66-106 127-162 (213)
34 PRK08333 L-fuculose phosphate 59.1 11 0.00024 31.7 3.3 49 66-119 120-170 (184)
35 PRK05467 Fe(II)-dependent oxyg 55.3 75 0.0016 27.9 8.0 30 258-287 129-158 (226)
36 PF06820 Phage_fiber_C: Putati 54.4 8 0.00017 26.2 1.3 35 239-273 16-61 (64)
37 PRK05874 L-fuculose-phosphate 46.4 21 0.00046 31.0 3.1 37 66-107 127-163 (217)
38 COG2140 Thermophilic glucose-6 46.0 49 0.0011 28.6 5.2 61 221-286 90-152 (209)
39 PF01471 PG_binding_1: Putativ 44.6 45 0.00097 21.8 3.9 42 84-125 3-44 (57)
40 PF03460 NIR_SIR_ferr: Nitrite 44.4 38 0.00081 23.2 3.7 37 84-120 24-68 (69)
41 PRK06755 hypothetical protein; 43.6 23 0.0005 30.6 2.9 37 66-107 136-172 (209)
42 COG1402 Uncharacterized protei 41.4 91 0.002 27.8 6.4 44 80-123 86-132 (250)
43 PRK08660 L-fuculose phosphate 40.5 33 0.00071 28.7 3.3 48 66-119 115-164 (181)
44 PRK06833 L-fuculose phosphate 39.7 34 0.00073 29.5 3.4 50 66-120 124-175 (214)
45 cd00379 Ribosomal_L10_P0 Ribos 38.3 86 0.0019 25.1 5.5 39 82-120 3-42 (155)
46 PF00596 Aldolase_II: Class II 38.0 17 0.00038 30.2 1.3 37 65-106 122-159 (184)
47 PF11243 DUF3045: Protein of u 36.8 28 0.0006 25.2 1.9 21 87-107 36-56 (89)
48 TIGR00568 alkb DNA alkylation 36.8 1.5E+02 0.0032 24.7 6.6 58 223-286 96-162 (169)
49 TIGR02409 carnitine_bodg gamma 36.6 41 0.00088 31.5 3.7 54 64-124 107-160 (366)
50 COG3113 Predicted NTP binding 35.9 96 0.0021 23.5 4.8 54 66-126 40-94 (99)
51 PF08823 PG_binding_2: Putativ 35.8 81 0.0018 22.5 4.3 45 83-129 15-59 (74)
52 PRK08087 L-fuculose phosphate 35.5 40 0.00086 29.1 3.2 37 66-107 122-158 (215)
53 PRK05834 hypothetical protein; 34.4 54 0.0012 27.9 3.8 52 66-120 121-176 (194)
54 cd05796 Ribosomal_P0_like Ribo 33.7 87 0.0019 25.8 4.8 40 81-120 2-42 (163)
55 PRK06357 hypothetical protein; 33.5 57 0.0012 28.2 3.8 36 66-106 130-171 (216)
56 PRK03634 rhamnulose-1-phosphat 33.2 42 0.00091 30.3 3.0 50 66-120 179-230 (274)
57 PF13532 2OG-FeII_Oxy_2: 2OG-F 33.0 89 0.0019 25.9 4.9 58 223-286 98-164 (194)
58 cd05795 Ribosomal_P0_L10e Ribo 32.7 1E+02 0.0022 25.7 5.2 40 81-120 2-42 (175)
59 TIGR01086 fucA L-fuculose phos 32.4 49 0.0011 28.5 3.2 36 66-106 121-156 (214)
60 PRK04019 rplP0 acidic ribosoma 31.9 1.2E+02 0.0025 28.2 5.8 41 80-120 6-47 (330)
61 PF00466 Ribosomal_L10: Riboso 31.4 1.9E+02 0.004 21.2 6.0 42 80-121 4-46 (100)
62 PF03668 ATP_bind_2: P-loop AT 31.4 65 0.0014 29.3 3.9 28 90-119 18-45 (284)
63 PRK06557 L-ribulose-5-phosphat 31.3 42 0.00092 29.0 2.7 49 66-119 130-182 (221)
64 COG0244 RplJ Ribosomal protein 30.1 1.6E+02 0.0035 24.6 5.9 41 80-120 6-47 (175)
65 TIGR03328 salvage_mtnB methylt 30.0 65 0.0014 27.2 3.5 36 66-107 126-164 (193)
66 PF08699 DUF1785: Domain of un 29.7 58 0.0013 21.4 2.5 24 259-283 19-42 (52)
67 TIGR02624 rhamnu_1P_ald rhamnu 29.6 42 0.00092 30.2 2.4 50 66-120 177-228 (270)
68 cd05797 Ribosomal_L10 Ribosoma 29.1 1.8E+02 0.004 23.4 6.0 40 81-120 4-44 (157)
69 smart00460 TGc Transglutaminas 28.9 52 0.0011 22.0 2.3 17 260-276 52-68 (68)
70 PRK15401 alpha-ketoglutarate-d 28.6 3.3E+02 0.0071 23.6 7.7 57 224-286 118-183 (213)
71 PRK06754 mtnB methylthioribulo 27.9 62 0.0013 27.8 3.1 35 66-106 137-172 (208)
72 PLN00052 prolyl 4-hydroxylase; 27.8 2.5E+02 0.0053 25.9 7.1 15 106-120 63-77 (310)
73 PF01361 Tautomerase: Tautomer 25.9 1E+02 0.0022 20.3 3.3 25 189-213 14-38 (60)
74 COG2450 Uncharacterized conser 25.3 1.2E+02 0.0026 24.0 3.9 35 66-100 65-99 (124)
75 PRK01964 4-oxalocrotonate taut 24.9 1E+02 0.0022 20.7 3.1 25 189-213 15-39 (64)
76 PF06560 GPI: Glucose-6-phosph 24.7 1.3E+02 0.0027 25.5 4.3 38 248-286 92-136 (182)
77 PRK06661 hypothetical protein; 24.3 71 0.0015 27.9 2.8 25 83-107 137-161 (231)
78 PRK00099 rplJ 50S ribosomal pr 24.3 2.5E+02 0.0054 23.1 6.0 40 81-120 5-45 (172)
79 PRK02220 4-oxalocrotonate taut 24.2 1.1E+02 0.0023 20.2 3.1 25 189-213 15-39 (61)
80 cd00398 Aldolase_II Class II A 24.1 51 0.0011 28.1 1.9 40 65-107 121-160 (209)
81 PF12791 RsgI_N: Anti-sigma fa 23.6 64 0.0014 21.2 1.9 21 266-289 14-34 (56)
82 PRK02289 4-oxalocrotonate taut 23.1 99 0.0022 20.6 2.8 25 189-213 15-39 (60)
83 PF12368 DUF3650: Protein of u 22.8 43 0.00094 19.2 0.8 17 99-115 9-25 (28)
84 TIGR00370 conserved hypothetic 22.5 1.6E+02 0.0035 25.2 4.6 49 235-289 150-201 (202)
85 cd00491 4Oxalocrotonate_Tautom 22.4 1.1E+02 0.0024 19.8 2.9 25 189-213 14-38 (58)
86 PF11043 DUF2856: Protein of u 22.2 1.1E+02 0.0024 22.2 2.9 23 109-131 21-43 (97)
87 PF10055 DUF2292: Uncharacteri 22.2 61 0.0013 20.0 1.4 20 245-265 13-32 (38)
88 PRK15331 chaperone protein Sic 22.0 1E+02 0.0022 25.7 3.1 42 81-123 8-49 (165)
89 TIGR00013 taut 4-oxalocrotonat 21.5 1.2E+02 0.0026 20.1 3.0 25 189-213 15-39 (63)
90 PRK00745 4-oxalocrotonate taut 21.4 1.3E+02 0.0029 19.8 3.2 25 189-213 15-39 (62)
91 KOG0256 1-aminocyclopropane-1- 21.2 2E+02 0.0044 27.7 5.2 54 70-123 393-460 (471)
92 PF11548 Receptor_IA-2: Protei 20.8 77 0.0017 23.6 2.0 32 195-226 19-51 (91)
No 1
>PLN02947 oxidoreductase
Probab=100.00 E-value=1e-64 Score=472.91 Aligned_cols=258 Identities=36% Similarity=0.631 Sum_probs=220.2
Q ss_pred ccchHHHHhCCCCCCCCeeecCCCCCCCCCC-----CCCCCCcceeeCCCCCCChHHHHHHHHHHHHHHHhcceeEEecC
Q 046780 30 KAGVKGLVDAGITKIPRIFIHDQLKLSNSRS-----GDSEFIIPILDLDGVNKDAISRAKIVKQVQNACQNWGFFQIVNH 104 (290)
Q Consensus 30 ~~~v~~l~~~~~~~vP~~yv~p~~~~~~~~~-----~~~~~~iPvIDls~l~~~~~~~~~~~~~l~~A~~~~GFF~l~nH 104 (290)
..+||.|+++|+.+||++|++|+++||.... +....+||||||+.+.+ ..+..++++|++||++||||||+||
T Consensus 25 ~~~v~~l~~~~~~~vp~~yv~p~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~--~~~~~~~~~l~~Ac~~~GFF~v~nH 102 (374)
T PLN02947 25 QKGVKHLCDSGITKVPAKYILPASDRPGLTRDEAIAASGNLKLPVIDLAELRG--SNRPHVLATLAAACREYGFFQVVNH 102 (374)
T ss_pred ecCHHHHHhcCCCcCCHHhcCCchhccccccccccccCCCCCCCeEECcccCC--ccHHHHHHHHHHHHHHCcEEEEEcC
Confidence 3689999999999999999999998875311 02445799999998852 3567889999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhccCCHHHHhhhhcccccCCceecccccccCCCCCCcccccccccccCCCCCCCCCc---hhHH
Q 046780 105 GIPVSILDEMIDGVIGFHEQDTEVKKKFYTRDYQKRMVLYNTNFDFYVAPEANWRDTLSCVMAPNPPDPEELP---EVCR 181 (290)
Q Consensus 105 Gi~~~~~~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~~gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~P---~~fr 181 (290)
||+.++++++++.+++||+||.|+|+++...+... ..||+..+....+...+|+|.+.+...|....++.|| +.||
T Consensus 103 GIp~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~-~~gyg~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~WP~~~~~fr 181 (374)
T PLN02947 103 GVPSEVIGGMIDVARRFFELPLEERAKYMSADMRA-PVRYGTSFNQNKDAVFCWRDFLKLVCHPLSDVLPHWPSSPADLR 181 (374)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHhhhhcccCCC-CeeeccccccccccccCceeceeeecCCcccccccCccchHHHH
Confidence 99999999999999999999999999986444333 5678765544445677999998876666432234554 6899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCC---hhhhhhcccCCCccccccccCCCCCCCCCCCCcccccCCCeeEEecCCC
Q 046780 182 DIIVDYAKKTTELALTLFELISEALGLN---ANRLKDMDCAEGLFLLGHYYPTCPEPELTMGTDSHADSSFLTVLLQDRL 258 (290)
Q Consensus 182 ~~~~~y~~~~~~l~~~ll~~la~~Lgl~---~~~~~~~~~~~~~~lr~~yYPp~~~~~~~~g~~~HtD~g~lTlL~qd~v 258 (290)
+++++|+++|++|+.+||++|+++|||+ .++|.+.+....+.+|+|||||||+|+.++|+++|||+|+||||+||++
T Consensus 182 ~~~~~Y~~~~~~L~~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrln~YPp~p~~~~~~G~~~HTD~g~lTlL~Qd~v 261 (374)
T PLN02947 182 KVAATYAKATKRLFLELMEAILESLGIVKRGSDELLEEFEAGSQMMVVNCYPACPEPELTLGMPPHSDYGFLTLLLQDEV 261 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCccchHHHHHHhcCcceeeeeecCCCCCCcccccCCCCccCCCceEEEEecCC
Confidence 9999999999999999999999999996 4566665555678899999999999999999999999999999999999
Q ss_pred CCeEEeeCCcEEEeccCCCcEEEecCcccccC
Q 046780 259 GGLQVLHENEWVNVTPIYGALVVNLGDMMQAS 290 (290)
Q Consensus 259 ~GLQV~~~g~W~~V~p~pgalvVNiGD~Lei~ 290 (290)
+||||+++|+|++|+|+||+|||||||+||++
T Consensus 262 ~GLQV~~~g~Wi~V~p~pga~VVNvGD~Lq~~ 293 (374)
T PLN02947 262 EGLQIMHAGRWVTVEPIPGSFVVNVGDHLEIF 293 (374)
T ss_pred CCeeEeECCEEEeCCCCCCeEEEEeCceeeee
Confidence 99999999999999999999999999999974
No 2
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=2.6e-64 Score=469.02 Aligned_cols=260 Identities=29% Similarity=0.499 Sum_probs=223.6
Q ss_pred cccchHHHHhCCCCCCCCeeecCCCCCCCCC--CCCCCCCcceeeCCCCC-CChHHHHHHHHHHHHHHHhcceeEEecCC
Q 046780 29 TKAGVKGLVDAGITKIPRIFIHDQLKLSNSR--SGDSEFIIPILDLDGVN-KDAISRAKIVKQVQNACQNWGFFQIVNHG 105 (290)
Q Consensus 29 ~~~~v~~l~~~~~~~vP~~yv~p~~~~~~~~--~~~~~~~iPvIDls~l~-~~~~~~~~~~~~l~~A~~~~GFF~l~nHG 105 (290)
...+||.|+++|+++||++|++|++++|... ......+||||||+.+. ++..++.+++++|++||++||||||+|||
T Consensus 13 ~~~~~~~l~~~~~~~vp~~~v~~~~~~p~~~~~~~~~~~~IPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHG 92 (361)
T PLN02758 13 QIDDVQELRKSKPTTVPERFIRDMDERPDLASDTLHAPDDIPVIDFSRLVKGDNDELFSEILKLRLACEEWGFFQVINHG 92 (361)
T ss_pred ccccHHHHHhcCCCCCCHHHcCCchhccccccccccCCCCCCeEEchhhcCCChHHHHHHHHHHHHHHHhCeEEEEecCC
Confidence 3456999999999999999999998887531 11244579999999886 34455677899999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhccCCHHHHhhhhcccccCCceecccccccCCCCCCcccccccccccCCC-CCCCCCc---hhHH
Q 046780 106 IPVSILDEMIDGVIGFHEQDTEVKKKFYTRDYQKRMVLYNTNFDFYVAPEANWRDTLSCVMAPNP-PDPEELP---EVCR 181 (290)
Q Consensus 106 i~~~~~~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~~gy~~~~~~~~~~~~d~~e~~~~~~~p~~-~~~~~~P---~~fr 181 (290)
|+.++++++++++++||+||.|+|+++.. .... ..||+...........+|+|.|.+...|.. ..++.|| +.||
T Consensus 93 i~~~l~~~~~~~~~~FF~LP~eeK~k~~~-~~~~-~~GY~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~~~~fr 170 (361)
T PLN02758 93 IELELLEEIEKVAREFFMLPLEEKQKYPM-APGT-VQGYGQAFVFSEDQKLDWCNMFALGVEPHFIRNPKLWPTKPARFS 170 (361)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHhcc-cCCC-ccccCcccccccccccCeeEEEEeeccCccccccccCccccHHHH
Confidence 99999999999999999999999999754 3334 679976544444566799999988766532 2244565 5799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhhcccCCCccccccccCCCCCCCCCCCCcccccCCCeeEEecCC--CC
Q 046780 182 DIIVDYAKKTTELALTLFELISEALGLNANRLKDMDCAEGLFLLGHYYPTCPEPELTMGTDSHADSSFLTVLLQDR--LG 259 (290)
Q Consensus 182 ~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~~~~~~lr~~yYPp~~~~~~~~g~~~HtD~g~lTlL~qd~--v~ 259 (290)
+++++|+++|.+|+.+||++|+++|||++++|.+.+....+.+|+||||||++++..+|+++|||+|+||||+|++ ++
T Consensus 171 ~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lR~~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd~~~v~ 250 (361)
T PLN02758 171 ETLEVYSREIRELCQRLLKYIAMTLGLKEDRFEEMFGEAVQAVRMNYYPPCSRPDLVLGLSPHSDGSALTVLQQGKGSCV 250 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhHHHhcCccceeeeecCCCCCCcccccCccCccCCceeEEEEeCCCCCC
Confidence 9999999999999999999999999999999998777777889999999999999999999999999999999984 89
Q ss_pred CeEEeeCCcEEEeccCCCcEEEecCcccccC
Q 046780 260 GLQVLHENEWVNVTPIYGALVVNLGDMMQAS 290 (290)
Q Consensus 260 GLQV~~~g~W~~V~p~pgalvVNiGD~Lei~ 290 (290)
||||+++|+|++|+|+||++|||+||+||++
T Consensus 251 GLQV~~~g~Wi~V~p~pgalVVNiGD~L~~~ 281 (361)
T PLN02758 251 GLQILKDNTWVPVHPVPNALVINIGDTLEVL 281 (361)
T ss_pred CeeeeeCCEEEeCCCCCCeEEEEccchhhhh
Confidence 9999999999999999999999999999974
No 3
>PLN02904 oxidoreductase
Probab=100.00 E-value=6.2e-64 Score=465.59 Aligned_cols=263 Identities=30% Similarity=0.546 Sum_probs=222.1
Q ss_pred hccccccchHHHHhCCCCCCCCeeecCCCCCCCCCC--CCCCCCcceeeCCCCCCChHHHHHHHHHHHHHHHhcceeEEe
Q 046780 25 AFDDTKAGVKGLVDAGITKIPRIFIHDQLKLSNSRS--GDSEFIIPILDLDGVNKDAISRAKIVKQVQNACQNWGFFQIV 102 (290)
Q Consensus 25 ~~~~~~~~v~~l~~~~~~~vP~~yv~p~~~~~~~~~--~~~~~~iPvIDls~l~~~~~~~~~~~~~l~~A~~~~GFF~l~ 102 (290)
.|.+++.||+.|+++|+++||++|++|++++|.... ......||||||+.+. ++..|..++++|++||++||||||+
T Consensus 8 ~~~~~~~~~~~l~~~~~~~vp~~~~~~~~~~p~~~~~~~~~~~~iPvIDls~~~-~~~~r~~~~~~l~~Ac~~~GFf~v~ 86 (357)
T PLN02904 8 VLDDSFTSAMTLTNSGVPHVPDRYVLPPSQRPMLGSSIGTSTITLPVIDLSLLH-DPLLRSCVIHEIEMACKGFGFFQVI 86 (357)
T ss_pred hhhccccchHHHHhcCCCCCCHHhCCCchhcccccccccccCCCCCEEECcccC-CchhHHHHHHHHHHHHHHCceEEEE
Confidence 356789999999999999999999999999885311 1233579999999886 3456778999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhccCCHHHHhhhhcccccCCceecccccccCCCCCCcccccccccccCCCCCCCCCc---hh
Q 046780 103 NHGIPVSILDEMIDGVIGFHEQDTEVKKKFYTRDYQKRMVLYNTNFDFYVAPEANWRDTLSCVMAPNPPDPEELP---EV 179 (290)
Q Consensus 103 nHGi~~~~~~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~~gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~P---~~ 179 (290)
||||+.++++++++++++||+||.|+|+++....... ..||+.......+...+|+|.+.....|....++.|| +.
T Consensus 87 nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~-~~~~g~~~~~~~~~~~~~~d~~~~~~~p~~~~~n~WP~~~p~ 165 (357)
T PLN02904 87 NHGIPSSVVKDALDAATRFFDLPVDEKMLLVSDNVHE-PVRYGTSLNHSTDRVHYWRDFIKHYSHPLSKWINLWPSNPPC 165 (357)
T ss_pred eCCCCHHHHHHHHHHHHHHhcCCHHHHhhhcccCCCC-cccccccccccCCCCCCceEEeeeccCCcccccccCcccchH
Confidence 9999999999999999999999999999986433223 4566654333334556899987655444322234555 57
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhhcccCCCccccccccCCCCCCCCCCCCcccccCCCeeEEecCCCC
Q 046780 180 CRDIIVDYAKKTTELALTLFELISEALGLNANRLKDMDCAEGLFLLGHYYPTCPEPELTMGTDSHADSSFLTVLLQDRLG 259 (290)
Q Consensus 180 fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~~~~~~lr~~yYPp~~~~~~~~g~~~HtD~g~lTlL~qd~v~ 259 (290)
||+++++|+++|.+|+.+||++||++|||++++|.+......+.||+|||||||+++.++|+++|||+|+||||+|+ ++
T Consensus 166 fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YPp~p~~~~~~g~~~HtD~g~lTlL~qd-~~ 244 (357)
T PLN02904 166 YKEKVGKYAEATHVLHKQLIEAISESLGLEKNYLQEEIEEGSQVMAVNCYPACPEPEIALGMPPHSDFGSLTILLQS-SQ 244 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCcccEEEeeecCCCCCcccccCCcCccCCCceEEEecC-CC
Confidence 99999999999999999999999999999999998877666778999999999999999999999999999999997 58
Q ss_pred CeEEee-CCcEEEeccCCCcEEEecCcccccC
Q 046780 260 GLQVLH-ENEWVNVTPIYGALVVNLGDMMQAS 290 (290)
Q Consensus 260 GLQV~~-~g~W~~V~p~pgalvVNiGD~Lei~ 290 (290)
||||++ +|+|++|+|+||+|||||||+||++
T Consensus 245 GLQV~~~~g~Wi~V~p~pgalVVNiGD~Le~~ 276 (357)
T PLN02904 245 GLQIMDCNKNWVCVPYIEGALIVQLGDQVEVM 276 (357)
T ss_pred eeeEEeCCCCEEECCCCCCeEEEEccHHHHHH
Confidence 999987 5899999999999999999999974
No 4
>PLN02216 protein SRG1
Probab=100.00 E-value=1.1e-63 Score=464.32 Aligned_cols=257 Identities=29% Similarity=0.547 Sum_probs=216.6
Q ss_pred cchHHHHhC-CCCCCCCeeecCCCCCCCCC-CCCCCCCcceeeCCCCCCChHHHHHHHHHHHHHHHhcceeEEecCCCCH
Q 046780 31 AGVKGLVDA-GITKIPRIFIHDQLKLSNSR-SGDSEFIIPILDLDGVNKDAISRAKIVKQVQNACQNWGFFQIVNHGIPV 108 (290)
Q Consensus 31 ~~v~~l~~~-~~~~vP~~yv~p~~~~~~~~-~~~~~~~iPvIDls~l~~~~~~~~~~~~~l~~A~~~~GFF~l~nHGi~~ 108 (290)
..||.|+++ ++++||++|++|++++|... .+....+||||||+.+.+ +..+.+++++|++||++||||||+||||+.
T Consensus 15 ~~~~~~~~~~~~~~~p~~~v~p~~~~~~~~~~~~~~~~iPvIDls~~~~-~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~ 93 (357)
T PLN02216 15 PSVQEMVKEKMITTVPPRYVRSDQDKTEIAVDSGLSSEIPIIDMKRLCS-STAMDSEVEKLDFACKEWGFFQLVNHGIDS 93 (357)
T ss_pred hhHHHHHhcCCCCCCCHhhCcCcccCCccccccCcCCCCCeEEChhccC-CccHHHHHHHHHHHHHHCcEEEEECCCCCH
Confidence 458999887 88999999999999887431 112235799999998862 223456899999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCHHHHhhhhcccccCCceecccccccCCCCCCcccccccccccCCC-CCCCCC---chhHHHHH
Q 046780 109 SILDEMIDGVIGFHEQDTEVKKKFYTRDYQKRMVLYNTNFDFYVAPEANWRDTLSCVMAPNP-PDPEEL---PEVCRDII 184 (290)
Q Consensus 109 ~~~~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~~gy~~~~~~~~~~~~d~~e~~~~~~~p~~-~~~~~~---P~~fr~~~ 184 (290)
++++++++++++||+||.|+|+++... ... ..||+........+..||+|.|.+...|.. ..++.| |+.||+++
T Consensus 94 ~li~~~~~~~~~FF~LP~eeK~k~~~~-~~~-~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~p~~fr~~~ 171 (357)
T PLN02216 94 SFLDKVKSEIQDFFNLPMEEKKKLWQR-PGE-IEGFGQAFVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPLPFRDTL 171 (357)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHhhhcC-CCC-ccccCccccccccccCCceeeeeeeccCcccccchhcccchHHHHHHH
Confidence 999999999999999999999998543 334 678876554344566799999987655531 122334 45799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhhhhhcccC-CCccccccccCCCCCCCCCCCCcccccCCCeeEEec-CCCCCeE
Q 046780 185 VDYAKKTTELALTLFELISEALGLNANRLKDMDCA-EGLFLLGHYYPTCPEPELTMGTDSHADSSFLTVLLQ-DRLGGLQ 262 (290)
Q Consensus 185 ~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~~-~~~~lr~~yYPp~~~~~~~~g~~~HtD~g~lTlL~q-d~v~GLQ 262 (290)
++|+++|++|+.+||++|+++|||++++|.+.+.. ..+.+|+||||||++++.++|+++|||+|+||||+| ++++|||
T Consensus 172 ~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTlL~q~~~v~GLQ 251 (357)
T PLN02216 172 ETYSAEVKSIAKILFAKMASALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQVNEVEGLQ 251 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCchheeEEeecCCCCCcccccCccCcccCceEEEEEecCCCCcee
Confidence 99999999999999999999999999999887654 356899999999999999999999999999999999 5799999
Q ss_pred EeeCCcEEEeccCCCcEEEecCcccccC
Q 046780 263 VLHENEWVNVTPIYGALVVNLGDMMQAS 290 (290)
Q Consensus 263 V~~~g~W~~V~p~pgalvVNiGD~Lei~ 290 (290)
|+++|+|++|+|+||+|||||||+||++
T Consensus 252 V~~~g~Wi~V~p~pgalvVNiGD~L~~~ 279 (357)
T PLN02216 252 IKKDGKWVSVKPLPNALVVNVGDILEII 279 (357)
T ss_pred EEECCEEEECCCCCCeEEEEcchhhHhh
Confidence 9999999999999999999999999974
No 5
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=1.3e-62 Score=455.67 Aligned_cols=258 Identities=35% Similarity=0.606 Sum_probs=215.8
Q ss_pred cccchHHHHhCCCCCCCCeeecCCCCCCCCCC-CCCCCCcceeeCCCCCCChHHHHHHHHHHHHHHHhcceeEEecCCCC
Q 046780 29 TKAGVKGLVDAGITKIPRIFIHDQLKLSNSRS-GDSEFIIPILDLDGVNKDAISRAKIVKQVQNACQNWGFFQIVNHGIP 107 (290)
Q Consensus 29 ~~~~v~~l~~~~~~~vP~~yv~p~~~~~~~~~-~~~~~~iPvIDls~l~~~~~~~~~~~~~l~~A~~~~GFF~l~nHGi~ 107 (290)
.+.-||+|. +++.+||++|++|+++++.... .....+||+|||+.+.+ ..+.+++++|++||++||||||+||||+
T Consensus 4 ~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iPvIDls~~~~--~~~~~~~~~l~~A~~~~GFf~v~nHGI~ 80 (348)
T PLN02912 4 SKLLVSDIA-SVVDHVPSNYVRPVSDRPNMSEVETSGDSIPLIDLRDLHG--PNRADIINQFAHACSSYGFFQIKNHGVP 80 (348)
T ss_pred chhHHHHHh-cCCCCCCHHhcCCchhccccccccccCCCCCeEECcccCC--cCHHHHHHHHHHHHHHCCEEEEEeCCCC
Confidence 345689886 8899999999999988774211 12345799999998852 2367789999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCHHHHhhhhcccccCCceecccccccCCCCCCcccccccccccCCCCCCCCCc---hhHHHHH
Q 046780 108 VSILDEMIDGVIGFHEQDTEVKKKFYTRDYQKRMVLYNTNFDFYVAPEANWRDTLSCVMAPNPPDPEELP---EVCRDII 184 (290)
Q Consensus 108 ~~~~~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~~gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~P---~~fr~~~ 184 (290)
.++++++++++++||+||.|+|++++...... ..+|+..+........+|+|.+.+...|....++.|| +.||+++
T Consensus 81 ~~l~~~~~~~~~~FF~LP~eeK~k~~~~~~~~-~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~n~wP~~~~~fr~~~ 159 (348)
T PLN02912 81 EETIKKMMNVAREFFHQSESERVKHYSADTKK-TTRLSTSFNVSKEKVSNWRDFLRLHCYPIEDFIEEWPSTPISFREVT 159 (348)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHhHhhcCCCC-cccccccccccccccCCchheEEEeecCcccccccCcchhHHHHHHH
Confidence 99999999999999999999999976544333 3344333332334567999998775444322234555 5799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhhhhhcccCCCccccccccCCCCCCCCCCCCcccccCCCeeEEecCCCCCeEEe
Q 046780 185 VDYAKKTTELALTLFELISEALGLNANRLKDMDCAEGLFLLGHYYPTCPEPELTMGTDSHADSSFLTVLLQDRLGGLQVL 264 (290)
Q Consensus 185 ~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~~~~~~lr~~yYPp~~~~~~~~g~~~HtD~g~lTlL~qd~v~GLQV~ 264 (290)
++|+++|.+|+.+||++||++|||++++|.+.+....+.||+||||||+.++..+|+++|||+|+||||+||+++||||+
T Consensus 160 ~~y~~~~~~l~~~il~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YPp~~~~~~~~G~~~HtD~g~lTlL~Qd~v~GLQV~ 239 (348)
T PLN02912 160 AEYATSVRALVLTLLEAISESLGLEKDRVSNTLGKHGQHMAINYYPPCPQPELTYGLPGHKDANLITVLLQDEVSGLQVF 239 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCccceeeeeecCCCCChhhcCCcCCCcCCCceEEEEECCCCceEEE
Confidence 99999999999999999999999999999887766678899999999999888999999999999999999999999999
Q ss_pred eCCcEEEeccCCCcEEEecCcccccC
Q 046780 265 HENEWVNVTPIYGALVVNLGDMMQAS 290 (290)
Q Consensus 265 ~~g~W~~V~p~pgalvVNiGD~Lei~ 290 (290)
++|+|++|+|+||++||||||+||++
T Consensus 240 ~~g~Wi~V~p~pgalvVNiGD~L~~~ 265 (348)
T PLN02912 240 KDGKWIAVNPIPNTFIVNLGDQMQVI 265 (348)
T ss_pred ECCcEEECCCcCCeEEEEcCHHHHHH
Confidence 99999999999999999999999873
No 6
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=100.00 E-value=3.2e-62 Score=455.32 Aligned_cols=260 Identities=27% Similarity=0.509 Sum_probs=218.6
Q ss_pred cchHHHHhCCCCCCCCeeecCCCCCCCCCC------CCCCCCcceeeCCCCC-CChHHHHHHHHHHHHHHHhcceeEEec
Q 046780 31 AGVKGLVDAGITKIPRIFIHDQLKLSNSRS------GDSEFIIPILDLDGVN-KDAISRAKIVKQVQNACQNWGFFQIVN 103 (290)
Q Consensus 31 ~~v~~l~~~~~~~vP~~yv~p~~~~~~~~~------~~~~~~iPvIDls~l~-~~~~~~~~~~~~l~~A~~~~GFF~l~n 103 (290)
..||.|+++++.+||++|++|++.++.... .....+||||||+.+. +++..|..++++|.+||++||||||+|
T Consensus 6 ~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~iPvIDls~~~~~~~~~~~~~~~~l~~Ac~~~GFF~l~n 85 (360)
T PLN03178 6 PRVEALASSGVSSIPKEYIRPPEERPSIGDVFEEEKKAAGPQVPVVDLSNIESDDEVVREACVEAVRAAAAEWGVMHLVG 85 (360)
T ss_pred hhHHHHHhcCCCCCCHHHcCCchhcccccccccccccccCCCCCEEEchhhcCCChhhHHHHHHHHHHHHHHCCEEEEEc
Confidence 358999999999999999999988864311 1234579999999986 455568899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhccCCHHHHhhhhcccccCCceecccccccCCCCCCcccccccccccCC-CCCCCCCc---hh
Q 046780 104 HGIPVSILDEMIDGVIGFHEQDTEVKKKFYTRDYQKRMVLYNTNFDFYVAPEANWRDTLSCVMAPN-PPDPEELP---EV 179 (290)
Q Consensus 104 HGi~~~~~~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~~gy~~~~~~~~~~~~d~~e~~~~~~~p~-~~~~~~~P---~~ 179 (290)
|||+.++++++++.+++||+||.|+|+++..........||+........+..+|+|.+.....|. ...++.|| +.
T Consensus 86 HGI~~~l~~~~~~~~~~FF~LP~e~K~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~n~wP~~~p~ 165 (360)
T PLN03178 86 HGIPADLLDRVRKAGEAFFRLPIEEKEKYANDQARGAAQGYGSKLAANASGQLEWEDYFFHLTLPEDKRDPSLWPKTPPD 165 (360)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHhhccCCCCCccccccccccccccccchhHhhccccCCccccccccCCCCchH
Confidence 999999999999999999999999999986432211156886544333345568999876644443 12234555 46
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhhccc---CCCccccccccCCCCCCCCCCCCcccccCCCeeEEecC
Q 046780 180 CRDIIVDYAKKTTELALTLFELISEALGLNANRLKDMDC---AEGLFLLGHYYPTCPEPELTMGTDSHADSSFLTVLLQD 256 (290)
Q Consensus 180 fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~---~~~~~lr~~yYPp~~~~~~~~g~~~HtD~g~lTlL~qd 256 (290)
||+++++|+++|.+|+.+||++||++|||++++|.+.+. ...+.+|+||||+|+.++..+|+++|||+|+||||+||
T Consensus 166 fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HTD~g~lTlL~qd 245 (360)
T PLN03178 166 YVPATSEYSRSLRSLATKLLAILSLGLGLPEDRLEKEVGGLEELLLQMKINYYPRCPQPDLALGVEAHTDVSALTFILHN 245 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCcccchhhhheeccCCCCCCccccCcCCccCCCceEEEeeC
Confidence 999999999999999999999999999999999998755 23467999999999999999999999999999999999
Q ss_pred CCCCeEEeeCCcEEEeccCCCcEEEecCcccccC
Q 046780 257 RLGGLQVLHENEWVNVTPIYGALVVNLGDMMQAS 290 (290)
Q Consensus 257 ~v~GLQV~~~g~W~~V~p~pgalvVNiGD~Lei~ 290 (290)
+++||||+++|+|++|+|+||++||||||+||++
T Consensus 246 ~v~GLQV~~~g~Wi~V~p~pg~lvVNiGD~L~~~ 279 (360)
T PLN03178 246 MVPGLQVLYEGKWVTAKCVPDSIVVHIGDTLEIL 279 (360)
T ss_pred CCCceeEeECCEEEEcCCCCCeEEEEccHHHHHH
Confidence 9999999999999999999999999999999973
No 7
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=100.00 E-value=8.5e-62 Score=452.56 Aligned_cols=263 Identities=31% Similarity=0.622 Sum_probs=221.4
Q ss_pred ccccccchHHHHhCCCCCCCCeeecCCCCCCCCC---CCCCCCCcceeeCCCCC-CChHHHHHHHHHHHHHHHhcceeEE
Q 046780 26 FDDTKAGVKGLVDAGITKIPRIFIHDQLKLSNSR---SGDSEFIIPILDLDGVN-KDAISRAKIVKQVQNACQNWGFFQI 101 (290)
Q Consensus 26 ~~~~~~~v~~l~~~~~~~vP~~yv~p~~~~~~~~---~~~~~~~iPvIDls~l~-~~~~~~~~~~~~l~~A~~~~GFF~l 101 (290)
...+...|+.|++++.++||++|++|+++++... ......+||||||+.+. +++..|..++++|.+||++||||||
T Consensus 8 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~r~~~~~~l~~Ac~~~GFF~l 87 (362)
T PLN02393 8 WPEPIVRVQSLSESGLPTIPDRYVKPPSQRPNSSNTTSAPAEINIPVIDLSSLFSDDARLRDATLRAISEACREWGFFQV 87 (362)
T ss_pred CCCccchHHHHHhcCCCcCCHHHcCCchhccccccccccCcCCCCCeEECccccCCChHHHHHHHHHHHHHHHHCcEEEE
Confidence 3334567999999999999999999999887531 12345689999999986 4556788999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHHHhccCCHHHHhhhhcccccCCceecccccccCCCCCCcccccccccccCCC-CCCCCCc---
Q 046780 102 VNHGIPVSILDEMIDGVIGFHEQDTEVKKKFYTRDYQKRMVLYNTNFDFYVAPEANWRDTLSCVMAPNP-PDPEELP--- 177 (290)
Q Consensus 102 ~nHGi~~~~~~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~~gy~~~~~~~~~~~~d~~e~~~~~~~p~~-~~~~~~P--- 177 (290)
+||||+.++++++++.+++||+||.|+|+++.. .... ..||+...........+|+|.+.+...|.. ..++.||
T Consensus 88 ~nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~~-~~~~-~~Gy~~~~~~~~~~~~d~~e~~~~~~~~~~~~~~n~wP~~~ 165 (362)
T PLN02393 88 VNHGVRPELMDRAREAWREFFHLPLEVKQRYAN-SPAT-YEGYGSRLGVEKGAILDWSDYYFLHYLPSSLKDPNKWPSLP 165 (362)
T ss_pred EeCCCCHHHHHHHHHHHHHHHcCCHHHHHhhhc-ccCc-ccccccccccccccccCchhheeeeecCccccchhhCcccc
Confidence 999999999999999999999999999999753 3333 678864433333456799999877644421 1233454
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhhcccCC---CccccccccCCCCCCCCCCCCcccccCCCeeEEe
Q 046780 178 EVCRDIIVDYAKKTTELALTLFELISEALGLNANRLKDMDCAE---GLFLLGHYYPTCPEPELTMGTDSHADSSFLTVLL 254 (290)
Q Consensus 178 ~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~~~---~~~lr~~yYPp~~~~~~~~g~~~HtD~g~lTlL~ 254 (290)
+.||+++++|+++|.+|+.+||++|+++||+++++|.+.+... ...+|+||||+|++++..+|+++|||+|+||||+
T Consensus 166 ~~fr~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lRl~~YP~~p~~~~~~g~~~HtD~g~lTlL~ 245 (362)
T PLN02393 166 PSCRELIEEYGEEVVKLCGRLMKVLSVNLGLEEDRLQNAFGGEDGVGACLRVNYYPKCPQPDLTLGLSPHSDPGGMTILL 245 (362)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCCccccceeeeeecCCCCCcccccccccccCCceEEEEe
Confidence 5799999999999999999999999999999999998865432 3689999999999998899999999999999999
Q ss_pred cC-CCCCeEEeeCCcEEEeccCCCcEEEecCcccccC
Q 046780 255 QD-RLGGLQVLHENEWVNVTPIYGALVVNLGDMMQAS 290 (290)
Q Consensus 255 qd-~v~GLQV~~~g~W~~V~p~pgalvVNiGD~Lei~ 290 (290)
|+ +++||||+++|+|++|+|.||++|||+||+||++
T Consensus 246 q~~~v~GLQV~~~g~W~~V~p~pgalVVNiGD~l~~~ 282 (362)
T PLN02393 246 PDDNVAGLQVRRDDAWITVKPVPDAFIVNIGDQIQVL 282 (362)
T ss_pred eCCCCCcceeeECCEEEECCCCCCeEEEEcchhhHhh
Confidence 85 6999999999999999999999999999999974
No 8
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=1.1e-61 Score=448.28 Aligned_cols=251 Identities=35% Similarity=0.641 Sum_probs=211.5
Q ss_pred HHHHhCCC--CCCCCeeecCCCCCCCCCCCCCCCCcceeeCCCCCCChHHHHHHHHHHHHHHHhcceeEEecCCCCHHHH
Q 046780 34 KGLVDAGI--TKIPRIFIHDQLKLSNSRSGDSEFIIPILDLDGVNKDAISRAKIVKQVQNACQNWGFFQIVNHGIPVSIL 111 (290)
Q Consensus 34 ~~l~~~~~--~~vP~~yv~p~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~l~~A~~~~GFF~l~nHGi~~~~~ 111 (290)
+.|+++|+ .+||++|++|++++|.........+||||||+.. .+++++++|.+||++||||||+||||+.+++
T Consensus 3 ~~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~iPvIDls~~-----~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~l~ 77 (337)
T PLN02639 3 TKLLSTGIRHTTLPESYVRPESERPRLSEVSTCENVPVIDLGSP-----DRAQVVQQIGDACRRYGFFQVINHGVSAELV 77 (337)
T ss_pred hhhhhhcCCcCcCCHHhcCCchhcccccccccCCCCCeEECCCc-----cHHHHHHHHHHHHHhCCEEEEEcCCCCHHHH
Confidence 45888887 8999999999988874211124467999999963 4678999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCHHHHhhhhcccccCCceecccccccCCCCCCcccccccccccCCCCCCCCCc---hhHHHHHHHHH
Q 046780 112 DEMIDGVIGFHEQDTEVKKKFYTRDYQKRMVLYNTNFDFYVAPEANWRDTLSCVMAPNPPDPEELP---EVCRDIIVDYA 188 (290)
Q Consensus 112 ~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~~gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~P---~~fr~~~~~y~ 188 (290)
+++++.+++||+||.|+|+++....... ..+|+..+....+...+|+|.+.+...|....++.|| +.||+++++|+
T Consensus 78 ~~~~~~~~~fF~LP~e~K~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~e~~~~~~~p~~~~~n~wP~~~~~fr~~~~~y~ 156 (337)
T PLN02639 78 EKMLAVAHEFFRLPVEEKMKLYSDDPTK-TMRLSTSFNVRKEKVHNWRDYLRLHCYPLDKYVPEWPSNPPSFKEIVSTYC 156 (337)
T ss_pred HHHHHHHHHHhcCCHHHHhhhhccCCCC-ccccccccccccCcccCchheEEeeecCCcccchhCcccchHHHHHHHHHH
Confidence 9999999999999999999976543333 3344333333334567899998876555422234454 57999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhhhhhcccCCCccccccccCCCCCCCCCCCCcccccCCCeeEEecC-CCCCeEEeeCC
Q 046780 189 KKTTELALTLFELISEALGLNANRLKDMDCAEGLFLLGHYYPTCPEPELTMGTDSHADSSFLTVLLQD-RLGGLQVLHEN 267 (290)
Q Consensus 189 ~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~~~~~~lr~~yYPp~~~~~~~~g~~~HtD~g~lTlL~qd-~v~GLQV~~~g 267 (290)
++|.+|+.+||++||++|||++++|.+.+......+|+||||||++++..+|+++|||+|+||||+|| +++||||+++|
T Consensus 157 ~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HTD~g~lTlL~qd~~v~GLQV~~~g 236 (337)
T PLN02639 157 REVRELGFRLQEAISESLGLEKDYIKNVLGEQGQHMAVNYYPPCPEPELTYGLPAHTDPNALTILLQDQQVAGLQVLKDG 236 (337)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCCccEEEEEcCCCCCCcccccCCCCCcCCCceEEEEecCCcCceEeecCC
Confidence 99999999999999999999999998877667778999999999999889999999999999999998 59999999999
Q ss_pred cEEEeccCCCcEEEecCcccccC
Q 046780 268 EWVNVTPIYGALVVNLGDMMQAS 290 (290)
Q Consensus 268 ~W~~V~p~pgalvVNiGD~Lei~ 290 (290)
+|++|+|+||++|||+||+||++
T Consensus 237 ~Wi~V~p~pg~lVVNiGD~L~~~ 259 (337)
T PLN02639 237 KWVAVNPHPGAFVINIGDQLQAL 259 (337)
T ss_pred eEEeccCCCCeEEEechhHHHHH
Confidence 99999999999999999999973
No 9
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=100.00 E-value=6.7e-62 Score=451.84 Aligned_cols=244 Identities=28% Similarity=0.472 Sum_probs=203.1
Q ss_pred HhCCCCCCCCeeecCCCCC--CCCC--CCCCCCCcceeeCCCCCCChHHHHHHHHHHHHHHHhcceeEEecCCCCHHHHH
Q 046780 37 VDAGITKIPRIFIHDQLKL--SNSR--SGDSEFIIPILDLDGVNKDAISRAKIVKQVQNACQNWGFFQIVNHGIPVSILD 112 (290)
Q Consensus 37 ~~~~~~~vP~~yv~p~~~~--~~~~--~~~~~~~iPvIDls~l~~~~~~~~~~~~~l~~A~~~~GFF~l~nHGi~~~~~~ 112 (290)
..+++.+||++|++|+++| +... ......+||||||+.. .++++|.+||++||||||+||||+.++++
T Consensus 23 ~~~~~~~vp~~~v~p~~~~~~~~~~~~~~~~~~~iPvIDl~~~--------~~~~~l~~Ac~~~GFF~vvnHGI~~~l~~ 94 (358)
T PLN02254 23 DFTSLQTLPDSHVWTPKDDLLFSSAPSPSTTDESIPVIDLSDP--------NALTLIGHACETWGVFQVTNHGIPLSLLD 94 (358)
T ss_pred chhhhccCChhhcCChhhccCccccccccCcCCCCCeEeCCCH--------HHHHHHHHHHHHCCEEEEEcCCCCHHHHH
Confidence 3344568999999999888 3211 1123357999999742 36899999999999999999999999999
Q ss_pred HHHHHHHHhccCCHHHHhhhhcccccCCceecccccccCCCCCCcccccccccccCCCCCCCCCc---hhHHHHHHHHHH
Q 046780 113 EMIDGVIGFHEQDTEVKKKFYTRDYQKRMVLYNTNFDFYVAPEANWRDTLSCVMAPNPPDPEELP---EVCRDIIVDYAK 189 (290)
Q Consensus 113 ~~~~~~~~FF~LP~eeK~~~~~~~~~~~~~gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~P---~~fr~~~~~y~~ 189 (290)
++++.+++||+||.|+|+++.. .... ..||+.........+.+|+|.|.+...|....++.|| +.||+++++|++
T Consensus 95 ~~~~~~~~FF~LP~EeK~k~~~-~~~~-~~Gy~~~~~~~~~~~~~w~e~~~~~~~p~~~~~~~wP~~~~~fr~~~~~Y~~ 172 (358)
T PLN02254 95 DIESQTRRLFSLPAQRKLKAAR-SPDG-VSGYGVARISSFFNKKMWSEGFTIMGSPLEHARQLWPQDHTKFCDVMEEYQK 172 (358)
T ss_pred HHHHHHHHHHcCCHHHHHhhcc-CCCC-cccccccccccccCCCCceeeEEeecCccccchhhCCCCchHHHHHHHHHHH
Confidence 9999999999999999999753 3334 6788765443344567999999876555321223444 579999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCChhhhhhcc-----cCCCccccccccCCCCCCCCCCCCcccccCCCeeEEecCCCCCeEEe
Q 046780 190 KTTELALTLFELISEALGLNANRLKDMD-----CAEGLFLLGHYYPTCPEPELTMGTDSHADSSFLTVLLQDRLGGLQVL 264 (290)
Q Consensus 190 ~~~~l~~~ll~~la~~Lgl~~~~~~~~~-----~~~~~~lr~~yYPp~~~~~~~~g~~~HtD~g~lTlL~qd~v~GLQV~ 264 (290)
+|++|+.+||++|+++|||++++|.+.+ ....+.+|+||||||++++.++|+++|||+|+||||+||+++||||+
T Consensus 173 ~~~~L~~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTiL~Qd~v~GLQV~ 252 (358)
T PLN02254 173 EMKKLAERLMWLMLGSLGITEEDIKWAGPKSGSQGAQAALQLNSYPVCPDPDRAMGLAPHTDSSLLTILYQSNTSGLQVF 252 (358)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHhhcccccCcceeEEEecCCCCCCcccccCcCCccCCCcEEEEecCCCCCceEE
Confidence 9999999999999999999999887643 34457899999999999999999999999999999999999999999
Q ss_pred eCC-cEEEeccCCCcEEEecCcccccC
Q 046780 265 HEN-EWVNVTPIYGALVVNLGDMMQAS 290 (290)
Q Consensus 265 ~~g-~W~~V~p~pgalvVNiGD~Lei~ 290 (290)
++| +|++|+|+||++||||||+||++
T Consensus 253 ~~~~~Wi~V~p~pgalVVNiGD~lq~~ 279 (358)
T PLN02254 253 REGVGWVTVPPVPGSLVVNVGDLLHIL 279 (358)
T ss_pred CCCCEEEEcccCCCCEEEEhHHHHHHH
Confidence 876 89999999999999999999974
No 10
>PLN02276 gibberellin 20-oxidase
Probab=100.00 E-value=1.6e-61 Score=450.59 Aligned_cols=245 Identities=30% Similarity=0.513 Sum_probs=211.3
Q ss_pred CCCCCeeecCCCCCCCCCCCCCCCCcceeeCCCCC-CChHHHHHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHH
Q 046780 42 TKIPRIFIHDQLKLSNSRSGDSEFIIPILDLDGVN-KDAISRAKIVKQVQNACQNWGFFQIVNHGIPVSILDEMIDGVIG 120 (290)
Q Consensus 42 ~~vP~~yv~p~~~~~~~~~~~~~~~iPvIDls~l~-~~~~~~~~~~~~l~~A~~~~GFF~l~nHGi~~~~~~~~~~~~~~ 120 (290)
++||+.|++|++++|.. .....+||||||+.+. +++..+..++++|++||++||||||+||||+.++++++++.+++
T Consensus 18 ~~vp~~~~~~~~~~p~~--~~~~~~iPvIDls~~~~~~~~~~~~~~~~l~~Ac~~~GFF~l~nHGI~~~l~~~~~~~~~~ 95 (361)
T PLN02276 18 SNIPAQFIWPDEEKPSA--AVPELAVPLIDLGGFLSGDEAATAEAARLVREACLKHGFFQVVNHGVDAALIRAAHEYMDA 95 (361)
T ss_pred CCCCHHhcCCccccCCC--CCcCCCCCeEEChhhcCCChHHHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 57999999999888752 1234579999999986 45667888999999999999999999999999999999999999
Q ss_pred hccCCHHHHhhhhcccccCCceecccccccCCCCCCcccccccccccCCC--------CCCCCCch---hHHHHHHHHHH
Q 046780 121 FHEQDTEVKKKFYTRDYQKRMVLYNTNFDFYVAPEANWRDTLSCVMAPNP--------PDPEELPE---VCRDIIVDYAK 189 (290)
Q Consensus 121 FF~LP~eeK~~~~~~~~~~~~~gy~~~~~~~~~~~~d~~e~~~~~~~p~~--------~~~~~~P~---~fr~~~~~y~~ 189 (290)
||+||.|+|+++.. .... ..||+........+..||+|.|.+...+.. .+++.||+ .||+++++|+.
T Consensus 96 FF~LP~eeK~k~~~-~~~~-~~GY~~~~~~~~~~~~d~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~fr~~~~~y~~ 173 (361)
T PLN02276 96 FFKLPLSEKQRAQR-KPGE-SCGYASSHTGRFSSKLPWKETLSFGYHADGGSSPVVVDYFKSVLGEDFEQFGKVYQEYCE 173 (361)
T ss_pred HHcCCHHHHHhhcc-CCCC-ccccCccCccccCCCCCeeeeEEEeccCcccccccchhcccccCCcchHHHHHHHHHHHH
Confidence 99999999999754 3334 679976554434456799999988654321 11234653 58899999999
Q ss_pred HHHHHHHHHHHHHHHHcCCChhhhhhcccCCCccccccccCCCCCCCCCCCCcccccCCCeeEEecCCCCCeEEeeCCcE
Q 046780 190 KTTELALTLFELISEALGLNANRLKDMDCAEGLFLLGHYYPTCPEPELTMGTDSHADSSFLTVLLQDRLGGLQVLHENEW 269 (290)
Q Consensus 190 ~~~~l~~~ll~~la~~Lgl~~~~~~~~~~~~~~~lr~~yYPp~~~~~~~~g~~~HtD~g~lTlL~qd~v~GLQV~~~g~W 269 (290)
+|++|+.+||++||++|||++++|.+.+......+|+||||||+.++..+|+++|||+|+||||+||+++||||+++|+|
T Consensus 174 ~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HTD~g~lTlL~Qd~v~GLQV~~~g~W 253 (361)
T PLN02276 174 AMKTLSLKIMELLGISLGVDRGYYRKFFEDGDSIMRCNYYPPCQEPELTLGTGPHCDPTSLTILHQDQVGGLQVFVDNKW 253 (361)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHhcCccceeeeEeCCCCCCcccccCCccccCCceeEEEEecCCCceEEEECCEE
Confidence 99999999999999999999999998877777889999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCcEEEecCcccccC
Q 046780 270 VNVTPIYGALVVNLGDMMQAS 290 (290)
Q Consensus 270 ~~V~p~pgalvVNiGD~Lei~ 290 (290)
++|+|+||++||||||+||++
T Consensus 254 i~V~p~pgalVVNiGD~L~~~ 274 (361)
T PLN02276 254 RSVRPRPGALVVNIGDTFMAL 274 (361)
T ss_pred EEcCCCCCeEEEEcHHHHHHH
Confidence 999999999999999999974
No 11
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=100.00 E-value=2.5e-61 Score=448.06 Aligned_cols=249 Identities=30% Similarity=0.549 Sum_probs=209.1
Q ss_pred CCCCCCCeeecCCCCCCCCCCCCCCCCcceeeCCCCCCChHHHHHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHH
Q 046780 40 GITKIPRIFIHDQLKLSNSRSGDSEFIIPILDLDGVNKDAISRAKIVKQVQNACQNWGFFQIVNHGIPVSILDEMIDGVI 119 (290)
Q Consensus 40 ~~~~vP~~yv~p~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~l~~A~~~~GFF~l~nHGi~~~~~~~~~~~~~ 119 (290)
+.++||.+|++|+++++.....+...+||||||+.+.++...|.+++++|.+||++||||||+||||+.++++++++.++
T Consensus 11 ~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~~~~~~~~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~li~~~~~~~~ 90 (358)
T PLN02515 11 GESTLQSSFVRDEDERPKVAYNQFSDEIPVISLAGIDEVGGRRGEICRKIVEACEDWGIFQVVDHGVDANLVADMTRLAR 90 (358)
T ss_pred CCCcCCHHhcCCchhccCccccccCCCCCEEEChhccCCchHHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 46799999999998887532223445799999998864345678899999999999999999999999999999999999
Q ss_pred HhccCCHHHHhhhhcccccCCceecccccccCCCCCCcccccccccccCC-CCCCCCCc---hhHHHHHHHHHHHHHHHH
Q 046780 120 GFHEQDTEVKKKFYTRDYQKRMVLYNTNFDFYVAPEANWRDTLSCVMAPN-PPDPEELP---EVCRDIIVDYAKKTTELA 195 (290)
Q Consensus 120 ~FF~LP~eeK~~~~~~~~~~~~~gy~~~~~~~~~~~~d~~e~~~~~~~p~-~~~~~~~P---~~fr~~~~~y~~~~~~l~ 195 (290)
+||+||.|+|+++.... .. ..||............||+|.|.+...|. ...++.|| +.||+++++|+++|.+|+
T Consensus 91 ~FF~LP~eeK~k~~~~~-~~-~~Gy~~~~~~~~~~~~d~kE~~~~~~~~~~~~~~n~WP~~~~~fr~~~~~y~~~~~~L~ 168 (358)
T PLN02515 91 DFFALPAEEKLRFDMSG-GK-KGGFIVSSHLQGEAVQDWREIVTYFSYPVRTRDYSRWPDKPEGWRAVTEEYSEKLMGLA 168 (358)
T ss_pred HHhcCCHHHHhhhCcCC-CC-ccCcccccccccccccCceeeeccccCcccccccccccccchHHHHHHHHHHHHHHHHH
Confidence 99999999999975432 23 46885433222345679999987654442 12234555 579999999999999999
Q ss_pred HHHHHHHHHHcCCChhhhhhcccCCCccccccccCCCCCCCCCCCCcccccCCCeeEEecCCCCCeEEeeCC--cEEEec
Q 046780 196 LTLFELISEALGLNANRLKDMDCAEGLFLLGHYYPTCPEPELTMGTDSHADSSFLTVLLQDRLGGLQVLHEN--EWVNVT 273 (290)
Q Consensus 196 ~~ll~~la~~Lgl~~~~~~~~~~~~~~~lr~~yYPp~~~~~~~~g~~~HtD~g~lTlL~qd~v~GLQV~~~g--~W~~V~ 273 (290)
.+||++|+++||+++++|.+.+....+.+|+||||+|+.++..+|+++|||+|+||||+||+++||||++++ +|++|+
T Consensus 169 ~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~G~~~HTD~g~lTlL~Qd~v~GLQV~~~~~~~Wi~Vp 248 (358)
T PLN02515 169 CKLLEVLSEAMGLEKEALTKACVDMDQKVVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATRDGGKTWITVQ 248 (358)
T ss_pred HHHHHHHHHhcCCChhhHHHhhcCccceEEEeecCCCCChhhccCCCCCCCCCeEEEEecCCCCceEEEECCCCeEEECC
Confidence 999999999999999999887666667899999999999999999999999999999999999999998763 799999
Q ss_pred cCCCcEEEecCcccccC
Q 046780 274 PIYGALVVNLGDMMQAS 290 (290)
Q Consensus 274 p~pgalvVNiGD~Lei~ 290 (290)
|+||+||||+||+||++
T Consensus 249 p~pgalVVNiGD~L~~~ 265 (358)
T PLN02515 249 PVEGAFVVNLGDHGHYL 265 (358)
T ss_pred CCCCeEEEEccHHHHHH
Confidence 99999999999999974
No 12
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=4.5e-60 Score=438.61 Aligned_cols=255 Identities=25% Similarity=0.411 Sum_probs=210.3
Q ss_pred chHHHHhCCCCCCCCeeecCCCCCCCC-C--CCCCCCCcceeeCCCCC-CChHHHHHHHHHHHHHHHhcceeEEecCCCC
Q 046780 32 GVKGLVDAGITKIPRIFIHDQLKLSNS-R--SGDSEFIIPILDLDGVN-KDAISRAKIVKQVQNACQNWGFFQIVNHGIP 107 (290)
Q Consensus 32 ~v~~l~~~~~~~vP~~yv~p~~~~~~~-~--~~~~~~~iPvIDls~l~-~~~~~~~~~~~~l~~A~~~~GFF~l~nHGi~ 107 (290)
-||++++++ ..||++|++|+..++.. . ......+||||||+.+. +++. +...+++|++||++||||||+||||+
T Consensus 8 ~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~IPvIDls~~~~~~~~-~~~~~~~l~~A~~~~GFf~l~nHGI~ 85 (348)
T PLN00417 8 TVQEVVAAG-EGLPERYLHTPTGDGEGQPLNGAVPEMDIPAIDLSLLLSSSDD-GREELSKLHSALSTWGVVQVMNHGIT 85 (348)
T ss_pred hHHHHHhCC-CCCCccccCCcccccccccccccccCCCCCeEEChhhcCCCch-HHHHHHHHHHHHHHCCEEEEEcCCCC
Confidence 389998876 58999999999875421 0 11234579999999876 3333 34456999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCHHHHhhhhcccccCCceecccccccCCCCCCcccccccccccCCC-CCCCCCc---hhHHHH
Q 046780 108 VSILDEMIDGVIGFHEQDTEVKKKFYTRDYQKRMVLYNTNFDFYVAPEANWRDTLSCVMAPNP-PDPEELP---EVCRDI 183 (290)
Q Consensus 108 ~~~~~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~~gy~~~~~~~~~~~~d~~e~~~~~~~p~~-~~~~~~P---~~fr~~ 183 (290)
.++++++++.+++||+||.|+|+++.... .. ..||+...........+|+|.+.+...|.. ..++.|| +.||++
T Consensus 86 ~~l~~~~~~~~~~FF~LP~eeK~~~~~~~-~~-~~GY~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~n~wP~~~~~fr~~ 163 (348)
T PLN00417 86 EAFLDKIYKLTKQFFALPTEEKQKCAREI-GS-IQGYGNDMILSDDQVLDWIDRLYLTTYPEDQRQLKFWPQVPVGFRET 163 (348)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHhhcCC-CC-ccccccccccccCCCcCccceeecccCCcccccccccccccHHHHHH
Confidence 99999999999999999999999985432 34 679976433333456789998876544431 2234455 679999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChhhhhhcccCC-CccccccccCCCCCCCCCCCCcccccCCCeeEEecC-CCCCe
Q 046780 184 IVDYAKKTTELALTLFELISEALGLNANRLKDMDCAE-GLFLLGHYYPTCPEPELTMGTDSHADSSFLTVLLQD-RLGGL 261 (290)
Q Consensus 184 ~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~~~-~~~lr~~yYPp~~~~~~~~g~~~HtD~g~lTlL~qd-~v~GL 261 (290)
+++|+++|.+|+.+||++||++|||++++|.+.+... ...+|+||||||+.++.++|+++|||+|+||||+|| +++||
T Consensus 164 ~~~y~~~~~~l~~~ll~~la~~LGl~~~~f~~~~~~~~~~~lRl~~YPp~~~~~~~~g~~~HTD~g~lTlL~qd~~v~GL 243 (348)
T PLN00417 164 LHEYTMKQRLVIEKFFKAMARSLELEENCFLEMYGENATMDTRFNMYPPCPRPDKVIGVKPHADGSAFTLLLPDKDVEGL 243 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCccceeeeeecCCCCCcccccCCcCccCCCceEEEEecCCCCce
Confidence 9999999999999999999999999999998876543 356899999999999889999999999999999997 69999
Q ss_pred EEeeCCcEEEeccCCCcEEEecCcccccC
Q 046780 262 QVLHENEWVNVTPIYGALVVNLGDMMQAS 290 (290)
Q Consensus 262 QV~~~g~W~~V~p~pgalvVNiGD~Lei~ 290 (290)
||+++|+|++|+|+||++||||||+||++
T Consensus 244 QV~~~g~Wi~V~p~pg~lVVNiGD~Le~~ 272 (348)
T PLN00417 244 QFLKDGKWYKAPIVPDTILINVGDQMEIM 272 (348)
T ss_pred eEeECCeEEECCCCCCcEEEEcChHHHHH
Confidence 99999999999999999999999999873
No 13
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=100.00 E-value=3.3e-60 Score=434.19 Aligned_cols=225 Identities=43% Similarity=0.765 Sum_probs=197.0
Q ss_pred CCCCcceeeCCCCC-CChHHHHHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHhccCCHHHHhhhhcccccCCc
Q 046780 63 SEFIIPILDLDGVN-KDAISRAKIVKQVQNACQNWGFFQIVNHGIPVSILDEMIDGVIGFHEQDTEVKKKFYTRDYQKRM 141 (290)
Q Consensus 63 ~~~~iPvIDls~l~-~~~~~~~~~~~~l~~A~~~~GFF~l~nHGi~~~~~~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~ 141 (290)
....||||||+.+. .++ .+..++++|++||++||||||+|||||.++++++++.+++||+||.|||+++...+. . .
T Consensus 14 ~~~~iPvIDls~~~~~~~-~~~~~~~~i~~Ace~wGfFqviNHGI~~~l~~~~~~~~~~fF~lP~eeK~k~~~~~~-~-~ 90 (322)
T KOG0143|consen 14 SELDIPVIDLSCLDSDDP-GREEVVEKLREACEEWGFFQVINHGISLELLDKVKEASKEFFELPLEEKLKVASEPG-K-Y 90 (322)
T ss_pred cCCCcCeEECCCCCCcch-hHHHHHHHHHHHHHHCCeeEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHHhhccCCC-C-c
Confidence 34579999999875 233 678889999999999999999999999999999999999999999999999865442 3 6
Q ss_pred eecccccccCCCCCCcccccccccccCCC-CCCC---CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhhcc
Q 046780 142 VLYNTNFDFYVAPEANWRDTLSCVMAPNP-PDPE---ELPEVCRDIIVDYAKKTTELALTLFELISEALGLNANRLKDMD 217 (290)
Q Consensus 142 ~gy~~~~~~~~~~~~d~~e~~~~~~~p~~-~~~~---~~P~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~ 217 (290)
.||++.+........+|+|.+.+...|.. ..++ +.|+.||+++++|.+++.+|+.+|+++|+++||++.+++.+.+
T Consensus 91 ~gY~~~~~~~~~~~~~w~d~~~~~~~p~~~~~~~~wp~~p~~~re~~~eY~~~~~~L~~~l~~~l~eslgl~~~~~~~~~ 170 (322)
T KOG0143|consen 91 RGYGTSFILSPLKELDWRDYLTLLSAPESSFDPNLWPEGPPEFRETMEEYAKEVMELSEKLLRLLSESLGLEPEYLEKLF 170 (322)
T ss_pred ccccccccccccccccchhheeeeccCccccCcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHhh
Confidence 89998876645578899999998877742 1222 3567899999999999999999999999999999976666665
Q ss_pred cC-CCccccccccCCCCCCCCCCCCcccccCCCeeEEecC-CCCCeEEe-eCCcEEEeccCCCcEEEecCcccccC
Q 046780 218 CA-EGLFLLGHYYPTCPEPELTMGTDSHADSSFLTVLLQD-RLGGLQVL-HENEWVNVTPIYGALVVNLGDMMQAS 290 (290)
Q Consensus 218 ~~-~~~~lr~~yYPp~~~~~~~~g~~~HtD~g~lTlL~qd-~v~GLQV~-~~g~W~~V~p~pgalvVNiGD~Lei~ 290 (290)
.. ....||+|||||||+|++++|+++|||.++||||+|| +|+||||+ ++|+|++|+|+||+|||||||+||+|
T Consensus 171 ~~~~~~~~r~n~Yp~cp~pe~~lGl~~HtD~~~lTiLlqd~~V~GLQv~~~dg~Wi~V~P~p~a~vVNiGD~l~~l 246 (322)
T KOG0143|consen 171 GETGGQVMRLNYYPPCPEPELTLGLGAHTDKSFLTILLQDDDVGGLQVFTKDGKWIDVPPIPGAFVVNIGDMLQIL 246 (322)
T ss_pred CCccceEEEEeecCCCcCccccccccCccCcCceEEEEccCCcCceEEEecCCeEEECCCCCCCEEEEcccHHhHh
Confidence 55 4668999999999999999999999999999999998 89999999 59999999999999999999999986
No 14
>PLN02704 flavonol synthase
Probab=100.00 E-value=4.8e-60 Score=437.01 Aligned_cols=254 Identities=29% Similarity=0.503 Sum_probs=211.7
Q ss_pred chHHHHhCC--CCCCCCeeecCCCCCCCCCC-CCCCCCcceeeCCCCCCChHHHHHHHHHHHHHHHhcceeEEecCCCCH
Q 046780 32 GVKGLVDAG--ITKIPRIFIHDQLKLSNSRS-GDSEFIIPILDLDGVNKDAISRAKIVKQVQNACQNWGFFQIVNHGIPV 108 (290)
Q Consensus 32 ~v~~l~~~~--~~~vP~~yv~p~~~~~~~~~-~~~~~~iPvIDls~l~~~~~~~~~~~~~l~~A~~~~GFF~l~nHGi~~ 108 (290)
+||.+++++ ..+||++|++|++++|.... .....+||||||+.. .+.+++++|.+||++||||||+||||+.
T Consensus 5 ~~~~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~iPvIDls~~-----~~~~~~~~l~~Ac~~~GFf~l~nHGI~~ 79 (335)
T PLN02704 5 RVQAIASSSLLKETIPEEFIRSEKEQPAITTFHGVDPQVPTIDLSDP-----DEEKLTRLIAEASKEWGMFQIVNHGIPS 79 (335)
T ss_pred hHHHHHhCCCCcCCCCHHHcCCcccccccccccccCCCCCeEECCCc-----cHHHHHHHHHHHHHHcCEEEEEcCCCCH
Confidence 588898876 78999999999988875422 124457999999964 2457889999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCHHHHhhhhcccccCCceecccccccCCCCCCcccccccccccCC-CCCCCCCc---hhHHHHH
Q 046780 109 SILDEMIDGVIGFHEQDTEVKKKFYTRDYQKRMVLYNTNFDFYVAPEANWRDTLSCVMAPN-PPDPEELP---EVCRDII 184 (290)
Q Consensus 109 ~~~~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~~gy~~~~~~~~~~~~d~~e~~~~~~~p~-~~~~~~~P---~~fr~~~ 184 (290)
++++++++.+++||+||.|+|+++..........||+...........+|+|.+.....|. ...++.|| +.||+++
T Consensus 80 ~l~~~~~~~~~~FF~LP~e~K~~~~~~~~~~~~~Gy~~~~~~~~~~~~~~~d~~~~~~~p~~~~~~n~wP~~~p~fr~~~ 159 (335)
T PLN02704 80 EVISKLQKVGKEFFELPQEEKEVYAKPPDSKSIEGYGTKLQKEPEGKKAWVDHLFHRIWPPSAINYQFWPKNPPSYREVN 159 (335)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHhhccCCCcccccccccccccccCcccceeeeEeeecCCcccchhhCccccchhHHHH
Confidence 9999999999999999999999975432221156887654433455678999876544442 11123454 5799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhhhhhcccCC--CccccccccCCCCCCCCCCCCcccccCCCeeEEecCCCCCeE
Q 046780 185 VDYAKKTTELALTLFELISEALGLNANRLKDMDCAE--GLFLLGHYYPTCPEPELTMGTDSHADSSFLTVLLQDRLGGLQ 262 (290)
Q Consensus 185 ~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~~~--~~~lr~~yYPp~~~~~~~~g~~~HtD~g~lTlL~qd~v~GLQ 262 (290)
++|+++|.+|+.+||++|+++||+++++|.+..... .+.+|+||||||++++..+|+++|||+|+||||+||+++|||
T Consensus 160 ~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd~v~GLQ 239 (335)
T PLN02704 160 EEYAKYLRGVADKLFKTLSLGLGLEEDELKEAVGGEELEYLLKINYYPPCPRPDLALGVVAHTDMSAITILVPNEVQGLQ 239 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCchhhhhhhhcCCCCCCcccccCccCccCCcceEEEecCCCCcee
Confidence 999999999999999999999999999998765432 357999999999999999999999999999999999999999
Q ss_pred EeeCCcEEEeccCCCcEEEecCcccccC
Q 046780 263 VLHENEWVNVTPIYGALVVNLGDMMQAS 290 (290)
Q Consensus 263 V~~~g~W~~V~p~pgalvVNiGD~Lei~ 290 (290)
|+++|+|++|+|.||++||||||+||++
T Consensus 240 V~~~g~Wi~V~p~pg~lvVNvGD~L~~~ 267 (335)
T PLN02704 240 VFRDDHWFDVKYIPNALVIHIGDQIEIL 267 (335)
T ss_pred EeECCEEEeCCCCCCeEEEEechHHHHH
Confidence 9999999999999999999999999974
No 15
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=1.4e-58 Score=428.83 Aligned_cols=243 Identities=32% Similarity=0.579 Sum_probs=204.2
Q ss_pred CCCCCeeecCCCCCCCCCCCCCCCCcceeeCCCCCCChHHHHHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHh
Q 046780 42 TKIPRIFIHDQLKLSNSRSGDSEFIIPILDLDGVNKDAISRAKIVKQVQNACQNWGFFQIVNHGIPVSILDEMIDGVIGF 121 (290)
Q Consensus 42 ~~vP~~yv~p~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~l~~A~~~~GFF~l~nHGi~~~~~~~~~~~~~~F 121 (290)
.++|..|++|+++++.........+||||||+.+. ..++.+++++|++||++||||||+||||+.++++++++.+++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~iPvIDls~~~--~~~~~~~~~~l~~Ac~~~GFf~v~nHGi~~~l~~~~~~~~~~F 79 (345)
T PLN02750 2 GEIDPAFIQAPEHRPKFHLTNSDEEIPVIDLSVST--SHDKTEVASKIGEACKKWGFFQVINHGVPSELRQRVEKVAKEF 79 (345)
T ss_pred CCCCHHHcCCchhccCccccccCCCCCeEECCCCC--cccHHHHHHHHHHHHHhCCEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 47999999999888753111124579999999863 3457788999999999999999999999999999999999999
Q ss_pred ccCCHHHHhhhhcccccCCceecccccccCCCCCCccccccccccc-----CC--CC-------CCCCCc---hhHHHHH
Q 046780 122 HEQDTEVKKKFYTRDYQKRMVLYNTNFDFYVAPEANWRDTLSCVMA-----PN--PP-------DPEELP---EVCRDII 184 (290)
Q Consensus 122 F~LP~eeK~~~~~~~~~~~~~gy~~~~~~~~~~~~d~~e~~~~~~~-----p~--~~-------~~~~~P---~~fr~~~ 184 (290)
|+||.|+|+++.. +... ..||.... ......||+|.|.+... |. .+ .++.|| +.||+++
T Consensus 80 F~LP~eeK~~~~~-~~~~-~~GY~~~~--~~~~~~d~kE~~~~~~~~~~~~p~~~~~~~~~~~~~~n~wP~~~~~fr~~~ 155 (345)
T PLN02750 80 FDQTTEEKRKVKR-DEVN-PMGYHDSE--HTKNIRDWKEVFDFLVQDPTLVPASPDPEDTELRKLTNQWPQNPSHFRELC 155 (345)
T ss_pred HcCCHHHHHhhcc-CCCC-ccCcCccc--ccccCCCceeEEEEeecccccccccccccccccccccccCCCCcHHHHHHH
Confidence 9999999999743 3333 56886422 12345699999987532 10 00 135566 5799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhhhhhcccCCCccccccccCCCCCCCCCCCCcccccCCCeeEEecCCCCCeEEe
Q 046780 185 VDYAKKTTELALTLFELISEALGLNANRLKDMDCAEGLFLLGHYYPTCPEPELTMGTDSHADSSFLTVLLQDRLGGLQVL 264 (290)
Q Consensus 185 ~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~~~~~~lr~~yYPp~~~~~~~~g~~~HtD~g~lTlL~qd~v~GLQV~ 264 (290)
++|+++|.+|+.+||++||++||+++++|.+.+....+.+|+||||||+.++..+|+++|||+|+||||+||+++||||+
T Consensus 156 ~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lR~~~YPp~~~~~~~~g~~~HtD~g~lTlL~qd~v~GLQV~ 235 (345)
T PLN02750 156 QEYARQVEKLAFKLLELISLSLGLPADRLNGYFKDQISFARFNHYPPCPAPHLALGVGRHKDGGALTVLAQDDVGGLQIS 235 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCcceEEEEEecCCCCCcccccCcCCCCCCCeEEEEecCCCCceEEe
Confidence 99999999999999999999999999999988777778999999999998888999999999999999999999999997
Q ss_pred e--CCcEEEeccCCCcEEEecCcccccC
Q 046780 265 H--ENEWVNVTPIYGALVVNLGDMMQAS 290 (290)
Q Consensus 265 ~--~g~W~~V~p~pgalvVNiGD~Lei~ 290 (290)
. +|+|++|+|+||++|||+||+||++
T Consensus 236 ~~~~g~Wi~V~p~pg~~vVNiGD~L~~~ 263 (345)
T PLN02750 236 RRSDGEWIPVKPIPDAFIINIGNCMQVW 263 (345)
T ss_pred ecCCCeEEEccCCCCeEEEEhHHHHHHH
Confidence 4 6899999999999999999999973
No 16
>PTZ00273 oxidase reductase; Provisional
Probab=100.00 E-value=8e-57 Score=413.67 Aligned_cols=227 Identities=26% Similarity=0.440 Sum_probs=193.4
Q ss_pred CCCCcceeeCCCCC-CChHHHHHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHhccCCHHHHhhhhcccccCCc
Q 046780 63 SEFIIPILDLDGVN-KDAISRAKIVKQVQNACQNWGFFQIVNHGIPVSILDEMIDGVIGFHEQDTEVKKKFYTRDYQKRM 141 (290)
Q Consensus 63 ~~~~iPvIDls~l~-~~~~~~~~~~~~l~~A~~~~GFF~l~nHGi~~~~~~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~ 141 (290)
+..+||||||+.+. +++..+++++++|++||++||||||+||||+.++++++++++++||+||.|+|+++....... .
T Consensus 2 ~~~~iPvIDl~~~~~~~~~~~~~~~~~l~~A~~~~Gff~v~nhgi~~~l~~~~~~~~~~fF~lP~e~K~~~~~~~~~~-~ 80 (320)
T PTZ00273 2 TRASLPVIDVSPLFGGESAEKMRVAKQIDEACRTWGFFYIVGHPIPQERIEKVLKMAKTFFSLPMEEKLKIDIRKSRL-H 80 (320)
T ss_pred CCCCCCEEecHHhcCCChHHHHHHHHHHHHHHHhCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccCCCCC-C
Confidence 34579999999886 455678889999999999999999999999999999999999999999999999985443334 6
Q ss_pred eeccccccc--CCCCCCccccccccccc-CC-C---------CCCCCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046780 142 VLYNTNFDF--YVAPEANWRDTLSCVMA-PN-P---------PDPEELP---EVCRDIIVDYAKKTTELALTLFELISEA 205 (290)
Q Consensus 142 ~gy~~~~~~--~~~~~~d~~e~~~~~~~-p~-~---------~~~~~~P---~~fr~~~~~y~~~~~~l~~~ll~~la~~ 205 (290)
.||...... ......||+|.|.+... |. . ..++.|| +.||+++++|+++|.+|+.+|+++|+++
T Consensus 81 ~GY~~~~~e~~~~~~~~d~kE~~~~~~~~~~~~~~~~~~~~~~~~n~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~ 160 (320)
T PTZ00273 81 RGYGAFGAEQLDPSKPYDYKETFDMGCHLPKDHPDVMAGKPLRGPNNHPTQVEGWMELMETHYRDMQALALVLLRALALA 160 (320)
T ss_pred CCCCCccccccCCCCCCCccceEEeeccCCcccchhhccccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789754322 12345799999987532 21 0 1245666 4699999999999999999999999999
Q ss_pred cCCChhhhhhcccCCCccccccccCCCCCC-CCCCCCcccccCCCeeEEecCCCCCeEEee-CCcEEEeccCCCcEEEec
Q 046780 206 LGLNANRLKDMDCAEGLFLLGHYYPTCPEP-ELTMGTDSHADSSFLTVLLQDRLGGLQVLH-ENEWVNVTPIYGALVVNL 283 (290)
Q Consensus 206 Lgl~~~~~~~~~~~~~~~lr~~yYPp~~~~-~~~~g~~~HtD~g~lTlL~qd~v~GLQV~~-~g~W~~V~p~pgalvVNi 283 (290)
||+++++|.+.+..+.+.+|++|||||+.+ +..+|+++|||+|+||||+||+++||||+. +|+|++|+|.||++|||+
T Consensus 161 Lgl~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~~g~~~HTD~g~lTlL~qd~~~GLqV~~~~g~Wi~V~p~pg~lvVNv 240 (320)
T PTZ00273 161 IGLREDFFDSKFMEPLSVFRMKHYPALPQTKKGRTVCGEHTDYGIITLLYQDSVGGLQVRNLSGEWMDVPPLEGSFVVNI 240 (320)
T ss_pred hCcCHHHHHHhhCCCcceeeeeecCCCCCccccCcccccccCCCeEEEEecCCCCceEEECCCCCEEeCCCCCCeEEEEH
Confidence 999999998877677788999999999874 578999999999999999999999999986 799999999999999999
Q ss_pred CcccccC
Q 046780 284 GDMMQAS 290 (290)
Q Consensus 284 GD~Lei~ 290 (290)
||+||++
T Consensus 241 GD~l~~~ 247 (320)
T PTZ00273 241 GDMMEMW 247 (320)
T ss_pred HHHHHHH
Confidence 9999973
No 17
>PLN02997 flavonol synthase
Probab=100.00 E-value=1.4e-56 Score=411.60 Aligned_cols=216 Identities=25% Similarity=0.494 Sum_probs=185.8
Q ss_pred CCCcceeeCCCCCCChHHHHHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHhccCCHHHHhhhhcccccCCcee
Q 046780 64 EFIIPILDLDGVNKDAISRAKIVKQVQNACQNWGFFQIVNHGIPVSILDEMIDGVIGFHEQDTEVKKKFYTRDYQKRMVL 143 (290)
Q Consensus 64 ~~~iPvIDls~l~~~~~~~~~~~~~l~~A~~~~GFF~l~nHGi~~~~~~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~~g 143 (290)
..+||||||+.+ .++.++++|++||++||||||+||||+.++++++++++++||+||.|+|+++... .. ..|
T Consensus 30 ~~~IPvIDls~~-----~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~--~~-~~G 101 (325)
T PLN02997 30 AVDVPVVDLSVS-----DEDFLVREVVKASEEWGVFQVVNHGIPTELMRQLQMVGKQFFELPEAEKETVAKE--ED-FEG 101 (325)
T ss_pred CCCCCeEECCCC-----CHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccC--CC-ccc
Confidence 457999999975 2467899999999999999999999999999999999999999999999997532 23 568
Q ss_pred cccccccCCCCCCcccccccccccCCC-CCCCCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhhcccC
Q 046780 144 YNTNFDFYVAPEANWRDTLSCVMAPNP-PDPEELP---EVCRDIIVDYAKKTTELALTLFELISEALGLNANRLKDMDCA 219 (290)
Q Consensus 144 y~~~~~~~~~~~~d~~e~~~~~~~p~~-~~~~~~P---~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~~ 219 (290)
|.... ..+..+|+|.+.....|.. ...+.|| +.||+++++|+++|.+|+.+||++|+++||+++++|.+.+..
T Consensus 102 Y~~~~---~~~~~d~~e~~~~~~~p~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~ia~~Lgl~~~~f~~~~~~ 178 (325)
T PLN02997 102 YKRNY---LGGINNWDEHLFHRLSPPSIINYKYWPKNPPQYREVTEEYTKHMKRLTEKILGWLSEGLGLPRETFTQSIGG 178 (325)
T ss_pred cCccc---ccCCCCccceeEeeecCccccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcC
Confidence 87543 2456689998765444421 1223454 579999999999999999999999999999999999886543
Q ss_pred C--CccccccccCCCCCCCCCCCCcccccCCCeeEEecCCCCCeEEeeCCcEEEeccCCCcEEEecCcccccC
Q 046780 220 E--GLFLLGHYYPTCPEPELTMGTDSHADSSFLTVLLQDRLGGLQVLHENEWVNVTPIYGALVVNLGDMMQAS 290 (290)
Q Consensus 220 ~--~~~lr~~yYPp~~~~~~~~g~~~HtD~g~lTlL~qd~v~GLQV~~~g~W~~V~p~pgalvVNiGD~Lei~ 290 (290)
. ...+|+||||||+.++..+|+++|||+|+||||+||+++||||+++|+|++|+|.||++||||||+||++
T Consensus 179 ~~~~~~lRl~~YP~~~~~~~~~g~~~HTD~g~lTlL~Qd~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~Le~~ 251 (325)
T PLN02997 179 ETAEYVLRVNFYPPTQDTELVIGAAAHSDMGAIALLIPNEVPGLQAFKDEQWLDLNYINSAVVVIIGDQLMRM 251 (325)
T ss_pred CcccceeeeecCCCCCCcccccCccCccCCCceEEEecCCCCCEEEeECCcEEECCCCCCeEEEEechHHHHH
Confidence 3 3579999999999998899999999999999999999999999999999999999999999999999973
No 18
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=100.00 E-value=4.5e-56 Score=392.08 Aligned_cols=225 Identities=29% Similarity=0.454 Sum_probs=202.0
Q ss_pred CCCcceeeCCCCC-CChHHHHHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHhccCCHHHHhhhhcccccCCce
Q 046780 64 EFIIPILDLDGVN-KDAISRAKIVKQVQNACQNWGFFQIVNHGIPVSILDEMIDGVIGFHEQDTEVKKKFYTRDYQKRMV 142 (290)
Q Consensus 64 ~~~iPvIDls~l~-~~~~~~~~~~~~l~~A~~~~GFF~l~nHGi~~~~~~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~~ 142 (290)
+..||+|||+.+. +++.+|..++++|++||++||||||+||||+.++++++++++++||+||.|||+++.+..... ..
T Consensus 3 ~~~lp~idls~~~~~~~~~~~~~~~~l~~A~r~~GFf~l~~~~i~~~~~~~~~~~arqFFaLp~eeK~~~~~~~~~~-~r 81 (322)
T COG3491 3 TRDLPIIDLSELAGSDPGARRRVAQELRAACREIGFFYLVNHGIDAALIDEAFALARQFFALPVEEKLKILMVLGRQ-HR 81 (322)
T ss_pred CCcCceeccHHhcCCCcHHHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHhcCcc-cc
Confidence 4579999999987 567799999999999999999999999999999999999999999999999999986544334 78
Q ss_pred ecccccccCCCCCCccccccccccc-----C---C---CCCCCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 046780 143 LYNTNFDFYVAPEANWRDTLSCVMA-----P---N---PPDPEELP--EVCRDIIVDYAKKTTELALTLFELISEALGLN 209 (290)
Q Consensus 143 gy~~~~~~~~~~~~d~~e~~~~~~~-----p---~---~~~~~~~P--~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~ 209 (290)
||........++..||+|.+++... + . ...|+.|| ++||+.+.+|+++|.+++.+||++||.+|+|+
T Consensus 82 GY~~~~~E~t~g~~d~kE~~d~g~~~~~~~~~~~~~~~~~gpN~wP~ip~~r~~ll~~~~~~~~~~~rLL~aiA~~LdL~ 161 (322)
T COG3491 82 GYTPHGGELTDGEPDYKEGLDMGPDLDAELAGVRAGTPLHGPNLWPAIPGLRDALLQYYRAMTAVGLRLLRAIALGLDLP 161 (322)
T ss_pred ccccCcccccCCccchhhhcccccccccccCCCccCCCcCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9987776667777799999987642 1 1 11356787 57999999999999999999999999999999
Q ss_pred hhhhhhcccCCCccccccccCCCCCCCCCCCCcccccCCCeeEEecCCCCCeEEeeC-CcEEEeccCCCcEEEecCcccc
Q 046780 210 ANRLKDMDCAEGLFLLGHYYPTCPEPELTMGTDSHADSSFLTVLLQDRLGGLQVLHE-NEWVNVTPIYGALVVNLGDMMQ 288 (290)
Q Consensus 210 ~~~~~~~~~~~~~~lr~~yYPp~~~~~~~~g~~~HtD~g~lTlL~qd~v~GLQV~~~-g~W~~V~p~pgalvVNiGD~Le 288 (290)
+++|...+.++.+.+|+.+||+.+..+..-|.++|||+|+||||+||+++||||+.+ |+|++|+|.||++|||||||||
T Consensus 162 ~d~Fd~~~~d~~~~~RLlrYP~~~~~~~~~~~GaHtD~G~lTLl~Qd~~~GLqv~~~~g~Wl~v~P~pgtlvVNiGdmLe 241 (322)
T COG3491 162 EDFFDKRTSDPNSVLRLLRYPSRPAREGADGVGAHTDYGLLTLLFQDDVGGLEVRPPNGGWLDVPPIPGTLVVNIGDMLE 241 (322)
T ss_pred hhhhhhccCCchheEEEEecCCCcccccccccccccCCCeEEEEEecccCCeEEecCCCCeeECCCCCCeEEEeHHHHHH
Confidence 999999888888999999999999888888999999999999999999999999987 9999999999999999999999
Q ss_pred c
Q 046780 289 A 289 (290)
Q Consensus 289 i 289 (290)
+
T Consensus 242 ~ 242 (322)
T COG3491 242 R 242 (322)
T ss_pred H
Confidence 6
No 19
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=100.00 E-value=3.6e-56 Score=408.37 Aligned_cols=218 Identities=30% Similarity=0.542 Sum_probs=184.3
Q ss_pred CCCCcceeeCCCCCCChHHHHHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHhccCCHHHHhhhhcccccCCce
Q 046780 63 SEFIIPILDLDGVNKDAISRAKIVKQVQNACQNWGFFQIVNHGIPVSILDEMIDGVIGFHEQDTEVKKKFYTRDYQKRMV 142 (290)
Q Consensus 63 ~~~~iPvIDls~l~~~~~~~~~~~~~l~~A~~~~GFF~l~nHGi~~~~~~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~~ 142 (290)
.+.+||+|||+.+. +.++.+++++|++||++||||||+||||+.++++++++++++||+||.|+|+++.. . ..
T Consensus 3 ~~~~iPvIDls~~~--~~~~~~~~~~l~~A~~~~GFF~v~nHGI~~~l~~~~~~~~~~fF~LP~e~K~~~~~----~-~~ 75 (321)
T PLN02299 3 KMESFPVIDMEKLN--GEERAATMELIKDACENWGFFELVNHGISHELMDEVEKMTKEHYKKCMEQRFKEMV----A-SK 75 (321)
T ss_pred CCCCCCEEECcCCC--cccHHHHHHHHHHHHHhcCEEEEECCCCCHHHHHHHHHHHHHHhCCCHHHHHhccc----C-CC
Confidence 35679999999885 23567789999999999999999999999999999999999999999999999642 1 34
Q ss_pred ecccccccCCCCCCcccccccccccCCC---CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhhcccC
Q 046780 143 LYNTNFDFYVAPEANWRDTLSCVMAPNP---PDPEELPEVCRDIIVDYAKKTTELALTLFELISEALGLNANRLKDMDCA 219 (290)
Q Consensus 143 gy~~~~~~~~~~~~d~~e~~~~~~~p~~---~~~~~~P~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~~ 219 (290)
||.+... .....||+|.|.+...|.. .||+ .|+.||+++++|+++|.+|+.+||++|+++|||++++|.+.+..
T Consensus 76 gy~~~~~--~~~~~d~ke~~~~~~~~~~~~~~wP~-~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~ 152 (321)
T PLN02299 76 GLEGVQT--EVEDLDWESTFFLRHLPESNLADIPD-LDDEYRKVMKDFALELEKLAEELLDLLCENLGLEKGYLKKAFHG 152 (321)
T ss_pred Ccccccc--cCCCcCHHHHcccccCCccccccCcc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcC
Confidence 5643221 2245689999987644431 1232 34689999999999999999999999999999999999876532
Q ss_pred ---CCccccccccCCCCCCCCCCCCcccccCCCeeEEecC-CCCCeEEeeCCcEEEeccCCCcEEEecCcccccC
Q 046780 220 ---EGLFLLGHYYPTCPEPELTMGTDSHADSSFLTVLLQD-RLGGLQVLHENEWVNVTPIYGALVVNLGDMMQAS 290 (290)
Q Consensus 220 ---~~~~lr~~yYPp~~~~~~~~g~~~HtD~g~lTlL~qd-~v~GLQV~~~g~W~~V~p~pgalvVNiGD~Lei~ 290 (290)
....+|++|||||+.++..+|+++|||+|+||||+|| +++||||+++|+|++|+|.||++||||||+||++
T Consensus 153 ~~~~~~~lRl~~YPp~~~~~~~~G~~~HTD~g~lTlL~qd~~v~GLQV~~~g~Wi~V~p~pg~lvVNiGD~l~~~ 227 (321)
T PLN02299 153 SKGPTFGTKVSNYPPCPKPDLVKGLRAHTDAGGIILLFQDDKVSGLQLLKDGEWVDVPPMRHSIVVNLGDQLEVI 227 (321)
T ss_pred CCCccceeeeEecCCCCCcccccCccCccCCCeEEEEEecCCCCCcCcccCCeEEECCCCCCeEEEEeCHHHHHH
Confidence 3457899999999999889999999999999999997 5999999999999999999999999999999973
No 20
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=4.7e-55 Score=403.35 Aligned_cols=217 Identities=29% Similarity=0.522 Sum_probs=178.4
Q ss_pred CCCcceeeCCCCCCChHHHHHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHhccCCHHHHhhhhcccccCCcee
Q 046780 64 EFIIPILDLDGVNKDAISRAKIVKQVQNACQNWGFFQIVNHGIPVSILDEMIDGVIGFHEQDTEVKKKFYTRDYQKRMVL 143 (290)
Q Consensus 64 ~~~iPvIDls~l~~~~~~~~~~~~~l~~A~~~~GFF~l~nHGi~~~~~~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~~g 143 (290)
..+||+|||+.+ .+++|++||++||||||+||||+.++++++++.+++||+||.|+|+++....... ..+
T Consensus 36 ~~~IPvIDls~~---------~~~~l~~A~~~~GFF~v~nHGI~~~li~~~~~~s~~FF~LP~eeK~k~~~~~~~~-~~~ 105 (341)
T PLN02984 36 DIDIPVIDMECL---------DMEKLREACKDWGIFRLENHGIPLTLMSQLKEISESLLSLPFESKRELFGVNSPL-SYF 105 (341)
T ss_pred cCCCCeEeCcHH---------HHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhcccCCCC-ccc
Confidence 456999999864 2479999999999999999999999999999999999999999999975222111 111
Q ss_pred ccc--ccccC-------CCCCCcccccccccccCC---CCCCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 046780 144 YNT--NFDFY-------VAPEANWRDTLSCVMAPN---PPDPEEL--PEVCRDIIVDYAKKTTELALTLFELISEALGLN 209 (290)
Q Consensus 144 y~~--~~~~~-------~~~~~d~~e~~~~~~~p~---~~~~~~~--P~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~ 209 (290)
|+. ..... .....||+|.|.+...+. ..++..+ ++.||+++++|+++|.+|+.+||++||++||++
T Consensus 106 ~g~~~~~~~~~~~~~~~~~~~~D~kE~f~~~~~~~~~~~~~p~~~~~~p~fr~~~~~y~~~~~~La~~ll~~lA~~Lgl~ 185 (341)
T PLN02984 106 WGTPALTPSGKALSRGPQESNVNWVEGFNIPLSSLSLLQTLSCSDPKLESFRVLMEEYGKHLTRIAVTLFEAIAKTLSLE 185 (341)
T ss_pred cCcccccccccccccccccCCCCeeeEEeCcCCchhhhhhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 211 11100 012469999998764321 1111112 257999999999999999999999999999999
Q ss_pred --hhhhhhcccCCCccccccccCCCCCCCCCCCCcccccCCCeeEEecCCCCCeEEeeCCcEEEeccCCCcEEEecCccc
Q 046780 210 --ANRLKDMDCAEGLFLLGHYYPTCPEPELTMGTDSHADSSFLTVLLQDRLGGLQVLHENEWVNVTPIYGALVVNLGDMM 287 (290)
Q Consensus 210 --~~~~~~~~~~~~~~lr~~yYPp~~~~~~~~g~~~HtD~g~lTlL~qd~v~GLQV~~~g~W~~V~p~pgalvVNiGD~L 287 (290)
+++|.+.+......+|+||||||+.++..+|+++|||+|+||||+||+++||||+++|+|++|+|+||++|||+||+|
T Consensus 186 ~~~~~f~~~~~~~~~~lRl~~YPp~~~~~~~~g~~aHTD~g~lTlL~Qd~v~GLQV~~~g~Wv~V~p~pgalVVNiGD~L 265 (341)
T PLN02984 186 LSGDQKMSYLSESTGVIRVYRYPQCSNEAEAPGMEVHTDSSVISILNQDEVGGLEVMKDGEWFNVKPIANTLVVNLGDMM 265 (341)
T ss_pred cchhHHHHHhcCccceEEEEeCCCCCCcccccCccCccCCCceEEEEeCCCCCeeEeeCCceEECCCCCCeEEEECChhh
Confidence 999988777777789999999999888899999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 046780 288 QAS 290 (290)
Q Consensus 288 ei~ 290 (290)
|++
T Consensus 266 e~w 268 (341)
T PLN02984 266 QVI 268 (341)
T ss_pred hhh
Confidence 974
No 21
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=3.8e-55 Score=403.76 Aligned_cols=220 Identities=24% Similarity=0.403 Sum_probs=183.0
Q ss_pred CCCCcceeeCCCCCCChHHHHHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHhccCCHHHHhhhhcccccCCce
Q 046780 63 SEFIIPILDLDGVNKDAISRAKIVKQVQNACQNWGFFQIVNHGIPVSILDEMIDGVIGFHEQDTEVKKKFYTRDYQKRMV 142 (290)
Q Consensus 63 ~~~~iPvIDls~l~~~~~~~~~~~~~l~~A~~~~GFF~l~nHGi~~~~~~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~~ 142 (290)
...+||+|||+.. .+..++++|++||++||||||+||||+.++++++++++++||+||.|+|+++.. . .. .+
T Consensus 11 ~~~~iP~IDl~~~-----~~~~~~~~l~~Ac~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~LP~e~K~k~~~-~-~~-~~ 82 (332)
T PLN03002 11 KVSSLNCIDLAND-----DLNHSVASLKQACLDCGFFYVINHGINEEFMDDVFEQSKKFFALPLEEKMKVLR-N-EK-HR 82 (332)
T ss_pred CCCCCCEEeCCch-----hHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHHcCCHHHHHhhcc-C-CC-CC
Confidence 3457999999952 355688999999999999999999999999999999999999999999999743 2 23 67
Q ss_pred ecccccccCC----CCCCccccccccccc-CC-CC-------CCCCCc-----hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046780 143 LYNTNFDFYV----APEANWRDTLSCVMA-PN-PP-------DPEELP-----EVCRDIIVDYAKKTTELALTLFELISE 204 (290)
Q Consensus 143 gy~~~~~~~~----~~~~d~~e~~~~~~~-p~-~~-------~~~~~P-----~~fr~~~~~y~~~~~~l~~~ll~~la~ 204 (290)
||........ ....||+|.|.+... |. .+ .++.|| +.||+++++|+++|.+|+.+||++||+
T Consensus 83 GY~~~~~e~~~~~~~~~~d~kE~f~~~~~~p~~~~~~~~~~~~~n~wP~~~~~p~fr~~~~~y~~~~~~l~~~ll~~la~ 162 (332)
T PLN03002 83 GYTPVLDEKLDPKNQINGDHKEGYYIGIEVPKDDPHWDKPFYGPNPWPDADVLPGWRETMEKYHQEALRVSMAIAKLLAL 162 (332)
T ss_pred CcCcccccccccccCCCCcceeeeEecccCCCCCccccccccCCCCCcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8975432211 123699999987642 21 10 134565 469999999999999999999999999
Q ss_pred HcCCChhhhhh--cccCCCccccccccCCCCCCC-CCCCCcccccCCCeeEEecCCCCCeEEeeC-----CcEEEeccCC
Q 046780 205 ALGLNANRLKD--MDCAEGLFLLGHYYPTCPEPE-LTMGTDSHADSSFLTVLLQDRLGGLQVLHE-----NEWVNVTPIY 276 (290)
Q Consensus 205 ~Lgl~~~~~~~--~~~~~~~~lr~~yYPp~~~~~-~~~g~~~HtD~g~lTlL~qd~v~GLQV~~~-----g~W~~V~p~p 276 (290)
+|||++++|.+ ......+.||+||||||++++ ..+|+++|||+|+||||+||+++||||+++ |+|++|+|+|
T Consensus 163 ~Lgl~~~~f~~~~~~~~~~~~lrl~~YP~~~~~~~~~~g~~~HTD~g~lTlL~qd~v~GLQV~~~~~~~~g~Wi~Vpp~p 242 (332)
T PLN03002 163 ALDLDVGYFDRTEMLGKPIATMRLLRYQGISDPSKGIYACGAHSDFGMMTLLATDGVMGLQICKDKNAMPQKWEYVPPIK 242 (332)
T ss_pred HcCCChHHhccccccCCCchheeeeeCCCCCCcccCccccccccCCCeEEEEeeCCCCceEEecCCCCCCCcEEECCCCC
Confidence 99999999986 344456789999999998776 479999999999999999999999999864 5899999999
Q ss_pred CcEEEecCcccccC
Q 046780 277 GALVVNLGDMMQAS 290 (290)
Q Consensus 277 galvVNiGD~Lei~ 290 (290)
|+|||||||+||++
T Consensus 243 g~~VVNiGD~L~~w 256 (332)
T PLN03002 243 GAFIVNLGDMLERW 256 (332)
T ss_pred CeEEEEHHHHHHHH
Confidence 99999999999863
No 22
>PLN02485 oxidoreductase
Probab=100.00 E-value=5.3e-55 Score=402.91 Aligned_cols=224 Identities=26% Similarity=0.426 Sum_probs=186.4
Q ss_pred CCcceeeCCCCCC---C-----hHHHHHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHhccCCHHHHhhhhccc
Q 046780 65 FIIPILDLDGVNK---D-----AISRAKIVKQVQNACQNWGFFQIVNHGIPVSILDEMIDGVIGFHEQDTEVKKKFYTRD 136 (290)
Q Consensus 65 ~~iPvIDls~l~~---~-----~~~~~~~~~~l~~A~~~~GFF~l~nHGi~~~~~~~~~~~~~~FF~LP~eeK~~~~~~~ 136 (290)
..||||||+.+.. + +..+.+++++|++||++||||||+||||+.++++++++++++||+||.|+|+++....
T Consensus 6 ~~iPvIDl~~l~~~~~~~~~~~~~~~~~~~~~l~~Ac~~~GFf~l~nHGi~~~l~~~~~~~~~~FF~lP~e~K~~~~~~~ 85 (329)
T PLN02485 6 KSIPVIDISPLVAKCDDPDMAEDPDVAEVVRQLDKACRDAGFFYVKGHGISDSLIKKVREVTHEFFELPYEEKLKIKMTP 85 (329)
T ss_pred CCCCeEechhhhccCcccccccchHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHHhhcccC
Confidence 4699999998741 1 2356778999999999999999999999999999999999999999999999975433
Q ss_pred ccCCceecccccccCCCCCCccccccccccc--CC--------CCCCCCCc---hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046780 137 YQKRMVLYNTNFDFYVAPEANWRDTLSCVMA--PN--------PPDPEELP---EVCRDIIVDYAKKTTELALTLFELIS 203 (290)
Q Consensus 137 ~~~~~~gy~~~~~~~~~~~~d~~e~~~~~~~--p~--------~~~~~~~P---~~fr~~~~~y~~~~~~l~~~ll~~la 203 (290)
... ..||.........+..||+|.|.+... +. ...++.|| +.||+++++|+++|.+|+.+||++||
T Consensus 86 ~~~-~rGY~~~g~~~~~~~~d~~E~~~~~~~~~~~~~~~~~~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~~a 164 (329)
T PLN02485 86 AAG-YRGYQRIGENVTKGKPDMHEAIDCYREFKPGKYGDLGKVMEGPNQWPENPQEFKALMEEYIKLCTDLSRKILRGIA 164 (329)
T ss_pred CCC-CCCcccccccccCCCCCcchhhhhcccCCCCcccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 578865443333456799998876431 11 01245666 57999999999999999999999999
Q ss_pred HHcCCChhhhhhc-ccCCCccccccccCCCCC----CCCCCCCcccccCCCeeEEecC-CCCCeEEee-CCcEEEeccCC
Q 046780 204 EALGLNANRLKDM-DCAEGLFLLGHYYPTCPE----PELTMGTDSHADSSFLTVLLQD-RLGGLQVLH-ENEWVNVTPIY 276 (290)
Q Consensus 204 ~~Lgl~~~~~~~~-~~~~~~~lr~~yYPp~~~----~~~~~g~~~HtD~g~lTlL~qd-~v~GLQV~~-~g~W~~V~p~p 276 (290)
++||+++++|.+. .....+.+|++|||||+. ++..+|+++|||+|+||||+|+ +++||||+. +|+|++|+|+|
T Consensus 165 ~~Lgl~~~~f~~~~~~~~~~~lrl~~YP~~~~~~~~~~~~~g~~~HTD~g~lTlL~qd~~~~GLqV~~~~g~Wi~V~p~p 244 (329)
T PLN02485 165 LALGGSPDEFEGKMAGDPFWVMRIIGYPGVSNLNGPPENDIGCGAHTDYGLLTLVNQDDDITALQVRNLSGEWIWAIPIP 244 (329)
T ss_pred HHcCCChHHhhhhhccCccceEEEEeCCCCccccCCcccCcccccccCCCeEEEEeccCCCCeeeEEcCCCcEEECCCCC
Confidence 9999999998765 344567899999999986 5668999999999999999997 589999985 79999999999
Q ss_pred CcEEEecCccccc
Q 046780 277 GALVVNLGDMMQA 289 (290)
Q Consensus 277 galvVNiGD~Lei 289 (290)
|++||||||+||+
T Consensus 245 g~~vVNiGD~L~~ 257 (329)
T PLN02485 245 GTFVCNIGDMLKI 257 (329)
T ss_pred CcEEEEhHHHHHH
Confidence 9999999999986
No 23
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=100.00 E-value=1.4e-54 Score=399.34 Aligned_cols=212 Identities=23% Similarity=0.454 Sum_probs=176.0
Q ss_pred CcceeeCCCCCCChHHHHHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHhccCCHHHHhhhhcccccCCceecc
Q 046780 66 IIPILDLDGVNKDAISRAKIVKQVQNACQNWGFFQIVNHGIPVSILDEMIDGVIGFHEQDTEVKKKFYTRDYQKRMVLYN 145 (290)
Q Consensus 66 ~iPvIDls~l~~~~~~~~~~~~~l~~A~~~~GFF~l~nHGi~~~~~~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~~gy~ 145 (290)
.||||||+.. +..++|++||++||||||+||||+.++++++++.+++||+||.|+|+++... . ..||+
T Consensus 26 ~iPvIDls~~--------~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~e~K~~~~~~---~-~~Gy~ 93 (335)
T PLN02156 26 LIPVIDLTDS--------DAKTQIVKACEEFGFFKVINHGVRPDLLTQLEQEAIGFFALPHSLKDKAGPP---D-PFGYG 93 (335)
T ss_pred CCCcccCCCh--------HHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhcCCC---C-CcccC
Confidence 5999999842 2357899999999999999999999999999999999999999999997422 3 45886
Q ss_pred cccccCCCCCCcccccccccccCCC---CCCCCC---chhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-hhhhhhccc
Q 046780 146 TNFDFYVAPEANWRDTLSCVMAPNP---PDPEEL---PEVCRDIIVDYAKKTTELALTLFELISEALGLN-ANRLKDMDC 218 (290)
Q Consensus 146 ~~~~~~~~~~~d~~e~~~~~~~p~~---~~~~~~---P~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~-~~~~~~~~~ 218 (290)
.... ......+|+|.+.+...+.. ..++.| |+.||+++++|+++|++|+.+||++|+++||++ +++|.+++.
T Consensus 94 ~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~wp~~p~~fr~~~~~Y~~~~~~L~~~ll~~la~~LGl~~~~~f~~~~~ 172 (335)
T PLN02156 94 TKRI-GPNGDVGWLEYILLNANLCLESHKTTAVFRHTPAIFREAVEEYMKEMKRMSSKVLEMVEEELKIEPKEKLSKLVK 172 (335)
T ss_pred cccc-CCCCCCCceeeEeeecCCccccccchhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCcHHHHHHHhc
Confidence 4322 12234689999877654321 112344 467999999999999999999999999999996 478887653
Q ss_pred --CCCccccccccCCCCCC--CCCCCCcccccCCCeeEEecCCCCCeEEe-eCCcEEEeccCCCcEEEecCcccccC
Q 046780 219 --AEGLFLLGHYYPTCPEP--ELTMGTDSHADSSFLTVLLQDRLGGLQVL-HENEWVNVTPIYGALVVNLGDMMQAS 290 (290)
Q Consensus 219 --~~~~~lr~~yYPp~~~~--~~~~g~~~HtD~g~lTlL~qd~v~GLQV~-~~g~W~~V~p~pgalvVNiGD~Lei~ 290 (290)
.....+|+||||||+.. +..+|+++|||+|+||||+||+++||||+ ++|+|++|+|+||++||||||+||++
T Consensus 173 ~~~~~~~lRl~~YP~~~~~~~~~~~g~~~HTD~g~lTlL~Qd~v~GLQV~~~~g~Wi~Vpp~pga~VVNiGD~l~~w 249 (335)
T PLN02156 173 VKESDSCLRMNHYPEKEETPEKVEIGFGEHTDPQLISLLRSNDTAGLQICVKDGTWVDVPPDHSSFFVLVGDTLQVM 249 (335)
T ss_pred CCCccceEeEEeCCCCCCCccccccCCCCccCCCceEEEEeCCCCceEEEeCCCCEEEccCCCCcEEEEhHHHHHHH
Confidence 33578999999999853 35799999999999999999999999997 57999999999999999999999974
No 24
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=100.00 E-value=2e-54 Score=393.47 Aligned_cols=214 Identities=29% Similarity=0.535 Sum_probs=178.4
Q ss_pred CcceeeCCCCCCChHHHHHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHhccCCHHHHhhhhcccccCCceecc
Q 046780 66 IIPILDLDGVNKDAISRAKIVKQVQNACQNWGFFQIVNHGIPVSILDEMIDGVIGFHEQDTEVKKKFYTRDYQKRMVLYN 145 (290)
Q Consensus 66 ~iPvIDls~l~~~~~~~~~~~~~l~~A~~~~GFF~l~nHGi~~~~~~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~~gy~ 145 (290)
+||||||+.+. +..+.+++++|++||++||||||+||||+.++++++++.+++||+||.|+|.. ...... ++.
T Consensus 2 ~iPvIDls~~~--~~~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~l~~~~~~~~~~FF~LP~e~k~~--~~~~~~---~~~ 74 (303)
T PLN02403 2 EIPVIDFDQLD--GEKRSKTMSLLHQACEKWGFFQVENHGIDKKLMEKVKQLVNSHYEENLKESFY--ESEIAK---ALD 74 (303)
T ss_pred CCCeEeCccCC--cccHHHHHHHHHHHHHhCceEEEECCCCCHHHHHHHHHHHHHHhcCCHHHHhh--cccccC---ccc
Confidence 59999999875 24577889999999999999999999999999999999999999999999962 222111 111
Q ss_pred cccccCCCCCCcccccccccccCCC---CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhhccc---C
Q 046780 146 TNFDFYVAPEANWRDTLSCVMAPNP---PDPEELPEVCRDIIVDYAKKTTELALTLFELISEALGLNANRLKDMDC---A 219 (290)
Q Consensus 146 ~~~~~~~~~~~d~~e~~~~~~~p~~---~~~~~~P~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~---~ 219 (290)
.. ......||+|.|.+...|.. .||+ .|+.||+++++|+++|.+|+.+|+++++++|||++++|.+.+. .
T Consensus 75 ~~---~~~~~~d~kE~~~~~~~p~~~~~~wP~-~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~ 150 (303)
T PLN02403 75 NE---GKTSDVDWESSFFIWHRPTSNINEIPN-LSEDLRKTMDEYIAQLIKLAEKLSELMSENLGLDKDYIKEAFSGNKG 150 (303)
T ss_pred cc---CCCCCccHhhhcccccCCccchhhCCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCCC
Confidence 10 11345699999988655531 1232 3467999999999999999999999999999999999987654 2
Q ss_pred CCccccccccCCCCCCCCCCCCcccccCCCeeEEecC-CCCCeEEeeCCcEEEeccCC-CcEEEecCcccccC
Q 046780 220 EGLFLLGHYYPTCPEPELTMGTDSHADSSFLTVLLQD-RLGGLQVLHENEWVNVTPIY-GALVVNLGDMMQAS 290 (290)
Q Consensus 220 ~~~~lr~~yYPp~~~~~~~~g~~~HtD~g~lTlL~qd-~v~GLQV~~~g~W~~V~p~p-galvVNiGD~Lei~ 290 (290)
....+|+||||||++++..+|+++|||+|+||||+|+ +++||||+++|+|++|+|.| |++||||||+||++
T Consensus 151 ~~~~lrl~~YP~~~~~~~~~G~~~HtD~g~lTlL~q~~~v~GLqV~~~g~Wi~V~p~p~~~lvVNvGD~L~~~ 223 (303)
T PLN02403 151 PSVGTKVAKYPECPRPELVRGLREHTDAGGIILLLQDDQVPGLEFLKDGKWVPIPPSKNNTIFVNTGDQLEVL 223 (303)
T ss_pred ccceeeeEcCCCCCCcccccCccCccCCCeEEEEEecCCCCceEeccCCeEEECCCCCCCEEEEEehHHHHHH
Confidence 3346899999999998888999999999999999997 59999999899999999999 69999999999863
No 25
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=100.00 E-value=2.8e-53 Score=386.41 Aligned_cols=208 Identities=31% Similarity=0.484 Sum_probs=172.6
Q ss_pred CCCcceeeCCCCCCChHHHHHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHhccCCHHHHhhhhcccccCCcee
Q 046780 64 EFIIPILDLDGVNKDAISRAKIVKQVQNACQNWGFFQIVNHGIPVSILDEMIDGVIGFHEQDTEVKKKFYTRDYQKRMVL 143 (290)
Q Consensus 64 ~~~iPvIDls~l~~~~~~~~~~~~~l~~A~~~~GFF~l~nHGi~~~~~~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~~g 143 (290)
...||||||+.+. ..+++|++||++||||||+||||+.++++++++.+++||+||.|+|+++... .. ..|
T Consensus 3 ~~~iPvIDls~~~-------~~~~~l~~Ac~~~GfF~l~nHGi~~~l~~~~~~~~~~FF~LP~e~K~~~~~~--~~-~~G 72 (300)
T PLN02365 3 EVNIPTIDLEEFP-------GQIEKLREACERWGCFRVVNHGVSLSLMAEMKKVVRSLFDLPDEVKRRNTDV--IL-GSG 72 (300)
T ss_pred cCCCCEEEChhhH-------HHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHhhccCC--CC-CCC
Confidence 3469999999862 2358999999999999999999999999999999999999999999996422 22 458
Q ss_pred cccccccCCCCCCcccccccccc--cCCC--CCCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-Chhhhhhc
Q 046780 144 YNTNFDFYVAPEANWRDTLSCVM--APNP--PDPEEL--PEVCRDIIVDYAKKTTELALTLFELISEALGL-NANRLKDM 216 (290)
Q Consensus 144 y~~~~~~~~~~~~d~~e~~~~~~--~p~~--~~~~~~--P~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl-~~~~~~~~ 216 (290)
|.... ...+|+|.+.+.. .+.. .+++.+ |+.||+++++|+++|.+|+.+||++|+++||| ++++|.+.
T Consensus 73 Y~~~~-----~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~f~~~ 147 (300)
T PLN02365 73 YMAPS-----EVNPLYEALGLYDMASPQAVDTFCSQLDASPHQRETIKKYAKAIHDLAMDLARKLAESLGLVEGDFFQGW 147 (300)
T ss_pred CCCcC-----CCCCchhheecccccCchhhhhccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHhhc
Confidence 86432 2236777776542 1110 112222 35799999999999999999999999999999 88888763
Q ss_pred ccCCCccccccccCCCCCCCCCCCCcccccCCCeeEEecC-CCCCeEEee--CCcEEEeccCCCcEEEecCcccccC
Q 046780 217 DCAEGLFLLGHYYPTCPEPELTMGTDSHADSSFLTVLLQD-RLGGLQVLH--ENEWVNVTPIYGALVVNLGDMMQAS 290 (290)
Q Consensus 217 ~~~~~~~lr~~yYPp~~~~~~~~g~~~HtD~g~lTlL~qd-~v~GLQV~~--~g~W~~V~p~pgalvVNiGD~Lei~ 290 (290)
...+|+|||||||.++..+|+++|||+|+||||+|| +++||||++ +|+|++|+|+||++|||+||+||++
T Consensus 148 ----~~~lr~~~YP~~p~~~~~~g~~~HtD~g~lTlL~qd~~~~GLqV~~~~~g~Wi~V~p~pga~vVNiGD~l~~~ 220 (300)
T PLN02365 148 ----PSQFRINKYNFTPETVGSSGVQIHTDSGFLTILQDDENVGGLEVMDPSSGEFVPVDPLPGTLLVNLGDVATAW 220 (300)
T ss_pred ----ccceeeeecCCCCCccccccccCccCCCceEEEecCCCcCceEEEECCCCeEEecCCCCCeEEEEhhHHHHHH
Confidence 357999999999998889999999999999999998 499999987 4899999999999999999999973
No 26
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=2.1e-43 Score=315.00 Aligned_cols=177 Identities=29% Similarity=0.468 Sum_probs=147.7
Q ss_pred HHHHHHHhcc-CCHHHHhhhhcccccCCceeccccccc--CCCCCCcccccccccccCC-CCCCCCCc---hhHHHHHHH
Q 046780 114 MIDGVIGFHE-QDTEVKKKFYTRDYQKRMVLYNTNFDF--YVAPEANWRDTLSCVMAPN-PPDPEELP---EVCRDIIVD 186 (290)
Q Consensus 114 ~~~~~~~FF~-LP~eeK~~~~~~~~~~~~~gy~~~~~~--~~~~~~d~~e~~~~~~~p~-~~~~~~~P---~~fr~~~~~ 186 (290)
|.+.+++||+ ||.|+|+++.........+||+..... ...+..||+|.|.+...|. ...++.|| +.||+++++
T Consensus 1 ~~~~~~~FF~~LP~eeK~~~~~~~~~~~~~GY~~~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~n~wP~~~~~f~~~~~~ 80 (262)
T PLN03001 1 MRSLGLSFFKDSPMEEKLRYACDPGSAASEGYGSRMLLGAKDDTVLDWRDFFDHHTFPLSRRNPSHWPDFPPDYREVVGE 80 (262)
T ss_pred ChHHHHHHHhhCCHHHHHHhhcCCCCCCccccccccccccCCCCccCchheeEeeecCccccchhhCCCCcHHHHHHHHH
Confidence 3578999997 999999997543322115689654332 1234569999998865553 12234454 579999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCChhhhhhcccCCCccccccccCCCCCCCCCCCCcccccCCCeeEEecCCCCCeEEeeC
Q 046780 187 YAKKTTELALTLFELISEALGLNANRLKDMDCAEGLFLLGHYYPTCPEPELTMGTDSHADSSFLTVLLQDRLGGLQVLHE 266 (290)
Q Consensus 187 y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~~~~~~lr~~yYPp~~~~~~~~g~~~HtD~g~lTlL~qd~v~GLQV~~~ 266 (290)
|+++|.+|+.+||++|+++||+++++|.+.+......+|++||||||+++.++|+++|||+|+||||+||+++||||+++
T Consensus 81 y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd~v~GLqV~~~ 160 (262)
T PLN03001 81 YGDCMKALAQKLLAFISESLGLPCSCIEDAVGDFYQNITVSYYPPCPQPELTLGLQSHSDFGAITLLIQDDVEGLQLLKD 160 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCcchhheeecCCCCCCcccccCCcCCcCCCeeEEEEeCCCCceEEeeC
Confidence 99999999999999999999999999988766666789999999999999999999999999999999999999999999
Q ss_pred CcEEEeccCCCcEEEecCcccccC
Q 046780 267 NEWVNVTPIYGALVVNLGDMMQAS 290 (290)
Q Consensus 267 g~W~~V~p~pgalvVNiGD~Lei~ 290 (290)
|+|++|+|+||++||||||+||+.
T Consensus 161 g~Wi~V~p~p~a~vVNiGD~l~~~ 184 (262)
T PLN03001 161 AEWLMVPPISDAILIIIADQTEII 184 (262)
T ss_pred CeEEECCCCCCcEEEEccHHHHHH
Confidence 999999999999999999999863
No 27
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=99.91 E-value=1.2e-24 Score=171.26 Aligned_cols=95 Identities=27% Similarity=0.585 Sum_probs=81.1
Q ss_pred cceeeCCCCCCChHHHHHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHhccCCHHHHhhhhcccccCCceeccc
Q 046780 67 IPILDLDGVNKDAISRAKIVKQVQNACQNWGFFQIVNHGIPVSILDEMIDGVIGFHEQDTEVKKKFYTRDYQKRMVLYNT 146 (290)
Q Consensus 67 iPvIDls~l~~~~~~~~~~~~~l~~A~~~~GFF~l~nHGi~~~~~~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~~gy~~ 146 (290)
||||||+. +...+..++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++.. . .. .+||..
T Consensus 1 iPvIDls~---~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~-~-~~-~~Gy~~ 74 (116)
T PF14226_consen 1 IPVIDLSP---DPADREEVAEQLRDACEEWGFFYLVNHGIPQELIDRVFAAAREFFALPLEEKQKYAR-S-PS-YRGYSP 74 (116)
T ss_dssp --EEEHGG---CHHHHHHHHHHHHHHHHHTSEEEEESSSSSHHHHHHHHHHHHHHHCSHHHHHHHHBC-C-TT-CSEEEE
T ss_pred CCeEECCC---CCccHHHHHHHHHHHHHhCCEEEEecccccchhhHHHHHHHHHHHHhhHHHHHHhcC-C-CC-Cccccc
Confidence 79999997 457899999999999999999999999999999999999999999999999999843 3 34 789987
Q ss_pred ccccCCCC-CCccccccccccc
Q 046780 147 NFDFYVAP-EANWRDTLSCVMA 167 (290)
Q Consensus 147 ~~~~~~~~-~~d~~e~~~~~~~ 167 (290)
........ ..||+|.|.+...
T Consensus 75 ~~~~~~~~~~~d~~E~~~~~~~ 96 (116)
T PF14226_consen 75 PGSESTDGGKPDWKESFNIGPD 96 (116)
T ss_dssp SEEECCTTCCCCSEEEEEEECC
T ss_pred CCccccCCCCCCceEEeEEECC
Confidence 65544444 8899999998765
No 28
>PLN03176 flavanone-3-hydroxylase; Provisional
Probab=99.91 E-value=4.8e-24 Score=168.55 Aligned_cols=112 Identities=23% Similarity=0.419 Sum_probs=89.7
Q ss_pred hHHHHhCCCCCCCCeeecCCCCCCCCCCCCCCCCcceeeCCCCCCChHHHHHHHHHHHHHHHhcceeEEecCCCCHHHHH
Q 046780 33 VKGLVDAGITKIPRIFIHDQLKLSNSRSGDSEFIIPILDLDGVNKDAISRAKIVKQVQNACQNWGFFQIVNHGIPVSILD 112 (290)
Q Consensus 33 v~~l~~~~~~~vP~~yv~p~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~l~~A~~~~GFF~l~nHGi~~~~~~ 112 (290)
|+.|... ..+|..|+++.+.+|.........+||||||+.+.++...+.+++++|++||++||||||+||||+.++++
T Consensus 6 ~~~l~~~--~~~p~~~~~~~~~~p~~~~~~~~~~iPvIDls~~~~~~~~~~~~~~~L~~A~~~~GFf~l~nhGi~~elid 83 (120)
T PLN03176 6 LTALAEE--KTLQASFVRDEDERPKVAYNQFSNEIPVISIAGIDDGGEKRAEICNKIVEACEEWGVFQIVDHGVDAKLVS 83 (120)
T ss_pred HHHHhcc--CCCCHhhcCChhhCcCccccccCCCCCeEECccccCCchHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHH
Confidence 4555443 68999999999888743212234579999999986323457788999999999999999999999999999
Q ss_pred HHHHHHHHhccCCHHHHhhhhcccccCCceeccccc
Q 046780 113 EMIDGVIGFHEQDTEVKKKFYTRDYQKRMVLYNTNF 148 (290)
Q Consensus 113 ~~~~~~~~FF~LP~eeK~~~~~~~~~~~~~gy~~~~ 148 (290)
++++.+++||+||.|+|+++... .+. ..||+..+
T Consensus 84 ~~~~~~~~FF~LP~e~K~k~~~~-~~~-~~gy~~~~ 117 (120)
T PLN03176 84 EMTTLAKEFFALPPEEKLRFDMS-GGK-KGGFIVSS 117 (120)
T ss_pred HHHHHHHHHHCCCHHHHHhcccC-CCc-cCCcchhc
Confidence 99999999999999999997543 344 66887654
No 29
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=99.57 E-value=1e-15 Score=116.70 Aligned_cols=66 Identities=42% Similarity=0.753 Sum_probs=54.7
Q ss_pred ccccccccCCCCCCCCCCCCcccccC--CCeeEEecCCCCCeEEeeCCcEEEeccCCCcEEEecCcccccC
Q 046780 222 LFLLGHYYPTCPEPELTMGTDSHADS--SFLTVLLQDRLGGLQVLHENEWVNVTPIYGALVVNLGDMMQAS 290 (290)
Q Consensus 222 ~~lr~~yYPp~~~~~~~~g~~~HtD~--g~lTlL~qd~v~GLQV~~~g~W~~V~p~pgalvVNiGD~Lei~ 290 (290)
..+|+++||| ++...|+++|+|. +++|+|+|++++||||..+++|+.|++.++.++||+||+|+++
T Consensus 2 ~~~~~~~Y~~---~~~~~~~~~H~D~~~~~~Til~~~~~~gL~~~~~~~~~~v~~~~~~~~v~~G~~l~~~ 69 (98)
T PF03171_consen 2 SQLRLNRYPP---PENGVGIGPHTDDEDGLLTILFQDEVGGLQVRDDGEWVDVPPPPGGFIVNFGDALEIL 69 (98)
T ss_dssp -EEEEEEE-S---CCGCEEEEEEEES--SSEEEEEETSTS-EEEEETTEEEE----TTCEEEEEBHHHHHH
T ss_pred CEEEEEECCC---cccCCceeCCCcCCCCeEEEEecccchheeccccccccCccCccceeeeeceeeeecc
Confidence 3589999998 6667899999999 9999999999999999999999999999999999999999863
No 30
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=85.99 E-value=0.55 Score=35.02 Aligned_cols=55 Identities=27% Similarity=0.291 Sum_probs=35.8
Q ss_pred ccccccCCCCCCCCCCCCcccccC-----CCeeEEec--CCC-----CCeEEee----CCcEEEec-----cCCCcEEEe
Q 046780 224 LLGHYYPTCPEPELTMGTDSHADS-----SFLTVLLQ--DRL-----GGLQVLH----ENEWVNVT-----PIYGALVVN 282 (290)
Q Consensus 224 lr~~yYPp~~~~~~~~g~~~HtD~-----g~lTlL~q--d~v-----~GLQV~~----~g~W~~V~-----p~pgalvVN 282 (290)
|++++|++- -.+.+|+|. ..+|+|+. +.. +.|++.. ++....++ |.+|.+|+.
T Consensus 1 ~~~~~y~~G------~~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~~~~~~~~~~~~~p~~g~~v~F 74 (100)
T PF13640_consen 1 MQLNRYPPG------GFFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSKDSDDVSREVEDFDIVPKPGRLVIF 74 (100)
T ss_dssp -EEEEEETT------EEEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS-TSSTCEEEGGGSEE-BTTEEEEE
T ss_pred CEEEEECcC------CEEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccccCCCcceEEEeccccCCCCEEEEE
Confidence 456777652 247899998 58899853 233 6788874 35566666 999999998
Q ss_pred cC
Q 046780 283 LG 284 (290)
Q Consensus 283 iG 284 (290)
-+
T Consensus 75 ~~ 76 (100)
T PF13640_consen 75 PS 76 (100)
T ss_dssp ES
T ss_pred eC
Confidence 77
No 31
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=78.07 E-value=12 Score=31.01 Aligned_cols=79 Identities=20% Similarity=0.090 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHcCCChhhhhhcccCCCccccccccCCCCCCCCCCCCcccccCC--------CeeEEec--C-CC-CCe
Q 046780 194 LALTLFELISEALGLNANRLKDMDCAEGLFLLGHYYPTCPEPELTMGTDSHADSS--------FLTVLLQ--D-RL-GGL 261 (290)
Q Consensus 194 l~~~ll~~la~~Lgl~~~~~~~~~~~~~~~lr~~yYPp~~~~~~~~g~~~HtD~g--------~lTlL~q--d-~v-~GL 261 (290)
+...|.+.++..++++.. .......+.+..|.+- -...+|.|.. .+|+++. + .. |.|
T Consensus 60 ~~~~l~~~i~~~~~~~~~-----~~~~~~~~~~~~Y~~g------~~~~~H~D~~~~~~~~~r~~T~~~yLn~~~~GG~~ 128 (178)
T smart00702 60 VIERIRQRLADFLGLLRG-----LPLSAEDAQVARYGPG------GHYGPHVDNFEDDENGDRIATFLLYLNDVEEGGEL 128 (178)
T ss_pred HHHHHHHHHHHHHCCCch-----hhccCcceEEEEECCC------CcccCcCCCCCCCCCCCeEEEEEEEeccCCcCceE
Confidence 344455555666665421 1112334567778762 2367899966 6888875 3 23 446
Q ss_pred EEeeCC--cEEEeccCCCcEEEec
Q 046780 262 QVLHEN--EWVNVTPIYGALVVNL 283 (290)
Q Consensus 262 QV~~~g--~W~~V~p~pgalvVNi 283 (290)
.+...+ ....|.|..|.+|+.-
T Consensus 129 ~f~~~~~~~~~~v~P~~G~~v~f~ 152 (178)
T smart00702 129 VFPGLGLMVCATVKPKKGDLLFFP 152 (178)
T ss_pred EecCCCCccceEEeCCCCcEEEEe
Confidence 665544 2679999999988864
No 32
>PF07350 DUF1479: Protein of unknown function (DUF1479); InterPro: IPR010856 This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown.; PDB: 2CSG_A 2DBI_A 2DBN_A.
Probab=68.21 E-value=4.2 Score=38.81 Aligned_cols=55 Identities=13% Similarity=0.200 Sum_probs=37.8
Q ss_pred CCCCcceeeCCCCCCChHHHHHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHhcc
Q 046780 63 SEFIIPILDLDGVNKDAISRAKIVKQVQNACQNWGFFQIVNHGIPVSILDEMIDGVIGFHE 123 (290)
Q Consensus 63 ~~~~iPvIDls~l~~~~~~~~~~~~~l~~A~~~~GFF~l~nHGi~~~~~~~~~~~~~~FF~ 123 (290)
....||+||++.+.. ....++..+..++.|++.|.|+ ||.+......+..++|.+
T Consensus 46 G~~~IP~i~f~di~~-----~~~~~~~~~~ir~rG~~VIR~V-vp~~ea~~w~~e~~~Y~~ 100 (416)
T PF07350_consen 46 GSSIIPEIDFADIEN-----GGVSEEFLAEIRRRGCVVIRGV-VPREEALAWKQELKEYLK 100 (416)
T ss_dssp T--SS-EEEHHHHHC-----T---HHHHHHHHHHSEEEECTS-S-HHHHHHHHHHHHHHHH
T ss_pred CCCCCceeeHHHHhC-----CCCCHHHHHHHHhcCEEEEeCC-CCHHHHHHHHHHHHHHHH
Confidence 334699999998741 1234677788889999999987 898888777777777654
No 33
>PRK08130 putative aldolase; Validated
Probab=60.17 E-value=11 Score=32.45 Aligned_cols=36 Identities=14% Similarity=0.282 Sum_probs=29.1
Q ss_pred CcceeeCCCCCCChHHHHHHHHHHHHHHHhcceeEEecCCC
Q 046780 66 IIPILDLDGVNKDAISRAKIVKQVQNACQNWGFFQIVNHGI 106 (290)
Q Consensus 66 ~iPvIDls~l~~~~~~~~~~~~~l~~A~~~~GFF~l~nHGi 106 (290)
.||++++... ...++++++.+++++...+.+.|||+
T Consensus 127 ~i~v~~y~~~-----g~~~la~~~~~~l~~~~~vll~nHGv 162 (213)
T PRK08130 127 HVPLIPYYRP-----GDPAIAEALAGLAARYRAVLLANHGP 162 (213)
T ss_pred ccceECCCCC-----ChHHHHHHHHHHhccCCEEEEcCCCC
Confidence 5899987653 23467888999999999999999995
No 34
>PRK08333 L-fuculose phosphate aldolase; Provisional
Probab=59.09 E-value=11 Score=31.71 Aligned_cols=49 Identities=24% Similarity=0.307 Sum_probs=33.7
Q ss_pred CcceeeCCCCCCChHHHHHHHHHHHHHHHhcceeEEecCCCC--HHHHHHHHHHHH
Q 046780 66 IIPILDLDGVNKDAISRAKIVKQVQNACQNWGFFQIVNHGIP--VSILDEMIDGVI 119 (290)
Q Consensus 66 ~iPvIDls~l~~~~~~~~~~~~~l~~A~~~~GFF~l~nHGi~--~~~~~~~~~~~~ 119 (290)
.||++++... ..+++++++.+++++...+.+.|||+= ...+++++..+.
T Consensus 120 ~v~v~~~~~~-----g~~~la~~~~~~l~~~~~vll~nHGv~~~G~~~~eA~~~~e 170 (184)
T PRK08333 120 KIPILPFRPA-----GSVELAEQVAEAMKEYDAVIMERHGIVTVGRSLREAFYKAE 170 (184)
T ss_pred CEeeecCCCC-----CcHHHHHHHHHHhccCCEEEEcCCCCEEEcCCHHHHHHHHH
Confidence 6899987653 234677888889988889999999963 223444444333
No 35
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=55.26 E-value=75 Score=27.86 Aligned_cols=30 Identities=20% Similarity=0.072 Sum_probs=20.2
Q ss_pred CCCeEEeeCCcEEEeccCCCcEEEecCccc
Q 046780 258 LGGLQVLHENEWVNVTPIYGALVVNLGDMM 287 (290)
Q Consensus 258 v~GLQV~~~g~W~~V~p~pgalvVNiGD~L 287 (290)
-|.|.+.....=..|+|..|.+||.-...|
T Consensus 129 GGEl~~~~~~g~~~Vkp~aG~~vlfps~~l 158 (226)
T PRK05467 129 GGELVIEDTYGEHRVKLPAGDLVLYPSTSL 158 (226)
T ss_pred CCceEEecCCCcEEEecCCCeEEEECCCCc
Confidence 456777643223688999999998765544
No 36
>PF06820 Phage_fiber_C: Putative prophage tail fibre C-terminus; InterPro: IPR009640 This entry represents the C terminus of phage 933W tail fibre protein. This domain is found together with conserved RLGP motif. The characteristics of the protein distribution suggest prophage matches.
Probab=54.40 E-value=8 Score=26.19 Aligned_cols=35 Identities=29% Similarity=0.316 Sum_probs=23.1
Q ss_pred CCCcccccCC---CeeEEe-------cCCCCCeEEee-CCcEEEec
Q 046780 239 MGTDSHADSS---FLTVLL-------QDRLGGLQVLH-ENEWVNVT 273 (290)
Q Consensus 239 ~g~~~HtD~g---~lTlL~-------qd~v~GLQV~~-~g~W~~V~ 273 (290)
-|+-+-+|.. .||+|- |--+.-|||+. ||.|.+|+
T Consensus 16 nG~~P~tdg~liT~ltfL~pkd~~~vq~~f~~LQv~fgDGpWqdik 61 (64)
T PF06820_consen 16 NGWFPETDGRLITGLTFLDPKDATRVQGVFRHLQVRFGDGPWQDIK 61 (64)
T ss_pred CccccCCCcceEeeeEEecccCchhheeeeeeeEEEeccCChhhcc
Confidence 4666777744 455662 22247799976 69999885
No 37
>PRK05874 L-fuculose-phosphate aldolase; Validated
Probab=46.36 E-value=21 Score=30.98 Aligned_cols=37 Identities=14% Similarity=0.172 Sum_probs=28.9
Q ss_pred CcceeeCCCCCCChHHHHHHHHHHHHHHHhcceeEEecCCCC
Q 046780 66 IIPILDLDGVNKDAISRAKIVKQVQNACQNWGFFQIVNHGIP 107 (290)
Q Consensus 66 ~iPvIDls~l~~~~~~~~~~~~~l~~A~~~~GFF~l~nHGi~ 107 (290)
.+|++++... ...++++.+.+++++...+.|.|||+=
T Consensus 127 ~v~~~~y~~~-----gs~ela~~v~~~l~~~~~vlL~nHGv~ 163 (217)
T PRK05874 127 DVRCTEYAAS-----GTPEVGRNAVRALEGRAAALIANHGLV 163 (217)
T ss_pred ceeeecCCCC-----CcHHHHHHHHHHhCcCCEEEEcCCCCe
Confidence 4788777642 225788899999999999999999963
No 38
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=46.05 E-value=49 Score=28.63 Aligned_cols=61 Identities=30% Similarity=0.440 Sum_probs=40.9
Q ss_pred CccccccccCCCCCCCCCCCCcccccCCCeeEEecCCCCCeEEee--CCcEEEeccCCCcEEEecCcc
Q 046780 221 GLFLLGHYYPTCPEPELTMGTDSHADSSFLTVLLQDRLGGLQVLH--ENEWVNVTPIYGALVVNLGDM 286 (290)
Q Consensus 221 ~~~lr~~yYPp~~~~~~~~g~~~HtD~g~lTlL~qd~v~GLQV~~--~g~W~~V~p~pgalvVNiGD~ 286 (290)
+....+|+-|+..+++-...+..+ =..++|+..+-..+.. .|.=+.|||-=|+.++|+||-
T Consensus 90 G~~~~~H~Hp~ade~E~y~vi~G~-----g~m~v~~~~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~ 152 (209)
T COG2140 90 GAMRELHYHPNADEPEIYYVLKGE-----GRMLVQKPEGEARVIAVRAGDVIYVPPGYGHYTINTGDE 152 (209)
T ss_pred CcccccccCCCCCcccEEEEEecc-----EEEEEEcCCCcEEEEEecCCcEEEeCCCcceEeecCCCC
Confidence 333344555666676655555544 3445566555566643 488999999999999999984
No 39
>PF01471 PG_binding_1: Putative peptidoglycan binding domain; InterPro: IPR002477 This entry represents peptidoglycan binding domain (PGBD), as well as related domains that share the same structure. PGBD may have a general peptidoglycan binding function, has a core structure consisting of a closed, three-helical bundle with a left-handed twist. It is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [, , ]. Examples are: Muramoyl-pentapeptide carboxypeptidase (3.4.17.8 from EC) N-acetylmuramoyl-L-alanine amidase cwlA precursor (cell wall hydrolase, autolysin, 3.5.1.28 from EC) Autolytic lysozyme (1,4-beta-N-acetylmuramidase, autolysin, 3.2.1.17 from EC) Membrane-bound lytic murein transglycosylase B Zinc-containing D-alanyl-D-alanine-cleaving carboxypeptidase, VanX []. Many of the proteins having this domain are as yet uncharacterised. However, some are known to belong to MEROPS peptidase family M15 (clan MD), subfamily M15A metallopeptidases. A number of the proteins belonging to subfamily M15A are non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Eukaryotic enzymes can contain structurally similar PGBD-like domains. Matrix metalloproteinases (MMP), which catalyse extracellular matrix degradation, have N-terminal domains that resemble PGBD. Examples are gelatinase A (MMP-2), which degrades type IV collagen [], stromelysin-1 (MMP-3), which plays a role in arthritis and tumour invasion [, ], and gelatinase B (MMP-9) secreted by neutrophils as part of the innate immune defence mechanism []. Several MMPs are implicated in cancer progression, since degradation of the extracellular matrix is an essential step in the cascade of metastasis [].; GO: 0008152 metabolic process; PDB: 1L6J_A 3BKH_A 3BKV_A 1GXD_A 1EAK_D 1CK7_A 1SLM_A 1LBU_A 1SU3_B.
Probab=44.59 E-value=45 Score=21.77 Aligned_cols=42 Identities=17% Similarity=0.099 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHhccCC
Q 046780 84 KIVKQVQNACQNWGFFQIVNHGIPVSILDEMIDGVIGFHEQD 125 (290)
Q Consensus 84 ~~~~~l~~A~~~~GFF~l~nHGi~~~~~~~~~~~~~~FF~LP 125 (290)
+.+..|...+...||....-.|+-.....++++..+.++.||
T Consensus 3 ~~v~~lq~~L~~~gy~~~~~~g~~~~~t~~Av~~fQ~~~gL~ 44 (57)
T PF01471_consen 3 PDVKALQQYLNRLGYYPGPVDGIFDPETREAVKAFQKANGLP 44 (57)
T ss_dssp HHHHHHHHHHHHTTTT-SSTTSBSHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCcCHHHHHHHHHHHHHcCcC
Confidence 346788999999999966666777777777777777777775
No 40
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=44.43 E-value=38 Score=23.21 Aligned_cols=37 Identities=11% Similarity=0.379 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhcc--eeEEec------CCCCHHHHHHHHHHHHH
Q 046780 84 KIVKQVQNACQNWG--FFQIVN------HGIPVSILDEMIDGVIG 120 (290)
Q Consensus 84 ~~~~~l~~A~~~~G--FF~l~n------HGi~~~~~~~~~~~~~~ 120 (290)
+.++.|.+.++++| .+.++. |||+.+.+..+++..++
T Consensus 24 ~~l~~la~ia~~yg~~~irlT~~Q~l~l~~v~~~~~~~i~~~L~~ 68 (69)
T PF03460_consen 24 EQLRALAEIAEKYGDGEIRLTTRQNLQLRGVPEENLPAIFEELKE 68 (69)
T ss_dssp HHHHHHHHHHHHHSTSEEEEETTSCEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEEECCCCeEEEeCCCHHHHHHHHHHHHc
Confidence 46678888888887 777664 78999999888877654
No 41
>PRK06755 hypothetical protein; Validated
Probab=43.60 E-value=23 Score=30.62 Aligned_cols=37 Identities=22% Similarity=0.255 Sum_probs=27.6
Q ss_pred CcceeeCCCCCCChHHHHHHHHHHHHHHHhcceeEEecCCCC
Q 046780 66 IIPILDLDGVNKDAISRAKIVKQVQNACQNWGFFQIVNHGIP 107 (290)
Q Consensus 66 ~iPvIDls~l~~~~~~~~~~~~~l~~A~~~~GFF~l~nHGi~ 107 (290)
.||+|....- ..+++++.+.++.++...+.|.|||+=
T Consensus 136 ~IPiv~~~~~-----~~~~la~~~~~~~~~~~avLl~~HGv~ 172 (209)
T PRK06755 136 TIPIVEDEKK-----FADLLENNVPNFIEGGGVVLVHNYGMI 172 (209)
T ss_pred EEEEEeCCCc-----hhHHHHHHHHhhccCCCEEEEcCCCeE
Confidence 5999988652 225666677777788888999999953
No 42
>COG1402 Uncharacterized protein, putative amidase [General function prediction only]
Probab=41.38 E-value=91 Score=27.78 Aligned_cols=44 Identities=20% Similarity=0.258 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHhcce--eEEec-CCCCHHHHHHHHHHHHHhcc
Q 046780 80 ISRAKIVKQVQNACQNWGF--FQIVN-HGIPVSILDEMIDGVIGFHE 123 (290)
Q Consensus 80 ~~~~~~~~~l~~A~~~~GF--F~l~n-HGi~~~~~~~~~~~~~~FF~ 123 (290)
+.-...+..+.+++..+|| |+++| ||=....++.+.+..+..|.
T Consensus 86 ~t~~~~~~~~~~Sl~~~Gfrk~v~vNgHGGN~~~l~~v~~el~~~~~ 132 (250)
T COG1402 86 ETLIALLVELVESLARHGFRKFVIVNGHGGNSAALEIVARELRAELG 132 (250)
T ss_pred HHHHHHHHHHHHHHHhcCccEEEEEecCCCcHHHHHHHHHHHHHhcc
Confidence 3455778899999999999 66666 88777777766666665554
No 43
>PRK08660 L-fuculose phosphate aldolase; Provisional
Probab=40.51 E-value=33 Score=28.69 Aligned_cols=48 Identities=17% Similarity=0.167 Sum_probs=31.5
Q ss_pred CcceeeCCCCCCChHHHHHHHHHHHHHHHhcceeEEecCCCC--HHHHHHHHHHHH
Q 046780 66 IIPILDLDGVNKDAISRAKIVKQVQNACQNWGFFQIVNHGIP--VSILDEMIDGVI 119 (290)
Q Consensus 66 ~iPvIDls~l~~~~~~~~~~~~~l~~A~~~~GFF~l~nHGi~--~~~~~~~~~~~~ 119 (290)
.||++ .... ...++++.+.+++++.-.+.+.|||+= ...+++++..+.
T Consensus 115 ~ipv~-~~~~-----~~~~la~~v~~~l~~~~~vll~nHG~~~~G~~i~~A~~~~e 164 (181)
T PRK08660 115 TIPVV-GGDI-----GSGELAENVARALSEHKGVVVRGHGTFAIGKTLEEAYIYTS 164 (181)
T ss_pred CEeEE-eCCC-----CCHHHHHHHHHHHhhCCEEEEcCCCceEeCCCHHHHHHHHH
Confidence 58988 3322 224677888899999999999999953 223444444333
No 44
>PRK06833 L-fuculose phosphate aldolase; Provisional
Probab=39.69 E-value=34 Score=29.49 Aligned_cols=50 Identities=10% Similarity=0.134 Sum_probs=32.3
Q ss_pred CcceeeCCCCCCChHHHHHHHHHHHHHHHhcceeEEecCCCC--HHHHHHHHHHHHH
Q 046780 66 IIPILDLDGVNKDAISRAKIVKQVQNACQNWGFFQIVNHGIP--VSILDEMIDGVIG 120 (290)
Q Consensus 66 ~iPvIDls~l~~~~~~~~~~~~~l~~A~~~~GFF~l~nHGi~--~~~~~~~~~~~~~ 120 (290)
.||++.+... .-.++++.+.+++++...+.+.|||+= ...+++++..+..
T Consensus 124 ~i~~~~y~~~-----gs~~la~~v~~~l~~~~~vll~nHGv~~~G~~~~eA~~~~e~ 175 (214)
T PRK06833 124 NVRCAEYATF-----GTKELAENAFEAMEDRRAVLLANHGLLAGANNLKNAFNIAEE 175 (214)
T ss_pred CeeeccCCCC-----ChHHHHHHHHHHhCcCCEEEECCCCCEEEeCCHHHHHHHHHH
Confidence 4777666432 234667888888999999999999953 2334444444433
No 45
>cd00379 Ribosomal_L10_P0 Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins. In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been sho
Probab=38.31 E-value=86 Score=25.12 Aligned_cols=39 Identities=15% Similarity=0.371 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhcceeEEec-CCCCHHHHHHHHHHHHH
Q 046780 82 RAKIVKQVQNACQNWGFFQIVN-HGIPVSILDEMIDGVIG 120 (290)
Q Consensus 82 ~~~~~~~l~~A~~~~GFF~l~n-HGi~~~~~~~~~~~~~~ 120 (290)
+...++++.+.++++.++++++ +|++.+.+.++....+.
T Consensus 3 K~~~v~~l~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~~ 42 (155)
T cd00379 3 KEELVEELKELLKKYKSVVVVDYRGLTVAQLTELRKELRE 42 (155)
T ss_pred hHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHH
Confidence 4677889999999998888886 57888877777766554
No 46
>PF00596 Aldolase_II: Class II Aldolase and Adducin N-terminal domain; InterPro: IPR001303 This entry represents the alpha/beta/alpha domain found in class II aldolases and adducin, usually at the N terminus. These proteins form part of a family that includes: rhamnulose-1-phosphate aldolase (4.1.2.19 from EC), L-fuculose phosphate aldolase (4.1.2.17 from EC) [, ] that is involved in the third step in fucose metabolism, L-ribulose- 5-phosphate 4-epimerase (5.1.3.4 from EC) involved in the third step of L-arabinose catabolism, a probable sugar isomerase SgbE, hypothetical proteins and the metazoan adducins which have not been ascribed any enzymatic function but which play a role in cell membrane cytoskeleton organisation. Adducins are members of the Ig superfamily and encode cell surface sialoglycoproteins expressed by cytokine-activated endothelium. This type I membrane protein mediates leukocyte-endothelial cell adhesion and signal transduction, and may play a role in the development of artherosclerosis and rheumatoid arthritis. Adducin is a cell-membrane skeletal protein that was first purified from human erythrocytes and subsequently isolated from bovine brain membranes. Isoforms of this protein have been detected in lung, kidney, testes and liver. Erythrocyte adducin is a 200kDa heterodimer protein, composed of alpha and beta subunits, present at about 30,000 copies per cell. It binds with high affinity to Ca(2+)/calmodulin and is a substrate for protein kinases A and C. Both alpha-adducin and beta-adducin show alternative splicing. Thus, there may be several different heterodimeric or homodimeric forms of adducin, each with a different functional specificity. It is thought to play a role in assembly of the spectrin-actin lattice that underlies the plasma membrane []. Missense mutations in both the alpha- and beta-adducin genes that alter amino acids that are normally phosphorylated have been associated with the regulation of blood pressure in the Milan hypertensive strain (MHS) of rats. Gamma adducin was isolated from human foetal brain []. It shows a high degree of similarity to the alpha and beta adducins.; GO: 0046872 metal ion binding; PDB: 2V9N_B 1GT7_B 2V9O_E 2V9M_B 2V9F_A 2UYV_A 1OJR_A 2V9G_C 2V29_B 2V9I_A ....
Probab=38.01 E-value=17 Score=30.19 Aligned_cols=37 Identities=14% Similarity=0.257 Sum_probs=27.9
Q ss_pred CCcceeeCCCCCCChHHHHHHHHHHHHHHH-hcceeEEecCCC
Q 046780 65 FIIPILDLDGVNKDAISRAKIVKQVQNACQ-NWGFFQIVNHGI 106 (290)
Q Consensus 65 ~~iPvIDls~l~~~~~~~~~~~~~l~~A~~-~~GFF~l~nHGi 106 (290)
..+|+++..... -.++.+.|.++++ +...+.+.|||+
T Consensus 122 ~~v~~~~~~~~~-----~~~l~~~i~~~l~~~~~~vll~nHG~ 159 (184)
T PF00596_consen 122 GEVPVVPYAPPG-----SEELAEAIAEALGEDRKAVLLRNHGV 159 (184)
T ss_dssp SCEEEE-THSTT-----CHHHHHHHHHHHTCTSSEEEETTTEE
T ss_pred ccceeecccccc-----chhhhhhhhhhhcCCceEEeecCCce
Confidence 569999987532 2345688889998 889999999995
No 47
>PF11243 DUF3045: Protein of unknown function (DUF3045); InterPro: IPR021405 This entry is represented by Bacteriophage T4, Gp30.1; it is a family of uncharacterised viral proteins.
Probab=36.84 E-value=28 Score=25.17 Aligned_cols=21 Identities=14% Similarity=0.349 Sum_probs=17.7
Q ss_pred HHHHHHHHhcceeEEecCCCC
Q 046780 87 KQVQNACQNWGFFQIVNHGIP 107 (290)
Q Consensus 87 ~~l~~A~~~~GFF~l~nHGi~ 107 (290)
+.|.+-|.+.||+||.-|-+.
T Consensus 36 ~~if~eCVeqGFiYVs~~~~~ 56 (89)
T PF11243_consen 36 EPIFKECVEQGFIYVSKYWMD 56 (89)
T ss_pred cHHHHHHHhcceEEEEeeeec
Confidence 467889999999999888664
No 48
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=36.77 E-value=1.5e+02 Score=24.72 Aligned_cols=58 Identities=16% Similarity=0.067 Sum_probs=35.0
Q ss_pred cccccccCCCCCCCCCCCCcccccCCCee----EEe-cCCCCC-eEEe---eCCcEEEeccCCCcEEEecCcc
Q 046780 223 FLLGHYYPTCPEPELTMGTDSHADSSFLT----VLL-QDRLGG-LQVL---HENEWVNVTPIYGALVVNLGDM 286 (290)
Q Consensus 223 ~lr~~yYPp~~~~~~~~g~~~HtD~g~lT----lL~-qd~v~G-LQV~---~~g~W~~V~p~pgalvVNiGD~ 286 (290)
...+|||++- -+++.|.|-.-+. |.- .=+... +.+. +++..+.+.-.+|.++|.-|+.
T Consensus 96 ~~LvN~Y~~G------d~mg~H~D~~e~~~~~pI~SvSLG~~r~F~~~~~~~~~~~~~l~L~sGsllvM~G~s 162 (169)
T TIGR00568 96 ACLVNRYAPG------ATLSLHQDRDEPDLRAPLLSVSLGLPAIFLIGGLKRNDPPKRLRLHSGDVVIMGGES 162 (169)
T ss_pred EEEEEeecCC------CccccccccccccCCCCEEEEeCCCCEEEEecCCcCCCceEEEEeCCCCEEEECCch
Confidence 3568999874 2689999953221 110 001111 1121 1356889999999999998874
No 49
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=36.62 E-value=41 Score=31.52 Aligned_cols=54 Identities=15% Similarity=0.094 Sum_probs=38.4
Q ss_pred CCCcceeeCCCCCCChHHHHHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHhccC
Q 046780 64 EFIIPILDLDGVNKDAISRAKIVKQVQNACQNWGFFQIVNHGIPVSILDEMIDGVIGFHEQ 124 (290)
Q Consensus 64 ~~~iPvIDls~l~~~~~~~~~~~~~l~~A~~~~GFF~l~nHGi~~~~~~~~~~~~~~FF~L 124 (290)
...+|.||++.+..+ .+.+.++.+++.++|+..+.|=.++.+. +.+.++.|-.+
T Consensus 107 ~~~~~~~d~~~~~~~----~~~~~~~~~~l~~~G~v~~rg~~~~~~~---~~~~~~~~G~~ 160 (366)
T TIGR02409 107 ELSLPKFDHEAVMKD----DSVLLDWLSAVRDVGIAVLKGAPTKPGA---VEKLGKRIGFI 160 (366)
T ss_pred cccCCceeHHHHhCC----HHHHHHHHHHHHhccEEEEeCCCCCHHH---HHHHHHHhccc
Confidence 356899999875422 3557889999999999999997776543 45556565443
No 50
>COG3113 Predicted NTP binding protein (contains STAS domain) [General function prediction only]
Probab=35.92 E-value=96 Score=23.51 Aligned_cols=54 Identities=15% Similarity=0.228 Sum_probs=37.7
Q ss_pred CcceeeCCCCC-CChHHHHHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHhccCCH
Q 046780 66 IIPILDLDGVN-KDAISRAKIVKQVQNACQNWGFFQIVNHGIPVSILDEMIDGVIGFHEQDT 126 (290)
Q Consensus 66 ~iPvIDls~l~-~~~~~~~~~~~~l~~A~~~~GFF~l~nHGi~~~~~~~~~~~~~~FF~LP~ 126 (290)
.+--||++.+. -| ++--.++-.+.+-|+.-|. .+.-+|+|+.+ ..--+.|+++.
T Consensus 40 ~~~~idLs~v~rvD-SaglALL~~~~~~~k~~g~-~~~L~~~p~~L-----~tLa~Ly~l~~ 94 (99)
T COG3113 40 DTVRIDLSGVSRVD-SAGLALLLHLIRLAKKQGN-AVTLTGVPEQL-----RTLAELYNLSD 94 (99)
T ss_pred CeEEEehhhcceec-hHHHHHHHHHHHHHHHcCC-eeEEecCcHHH-----HHHHHHhCcHh
Confidence 46678998875 23 2444566788888999998 78889999874 33445666654
No 51
>PF08823 PG_binding_2: Putative peptidoglycan binding domain; InterPro: IPR014927 This entry may be a peptidoglycan binding domain.
Probab=35.79 E-value=81 Score=22.45 Aligned_cols=45 Identities=16% Similarity=0.307 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHhccCCHHHH
Q 046780 83 AKIVKQVQNACQNWGFFQIVNHGIPVSILDEMIDGVIGFHEQDTEVK 129 (290)
Q Consensus 83 ~~~~~~l~~A~~~~GFF~l~nHGi~~~~~~~~~~~~~~FF~LP~eeK 129 (290)
.+++++|.++++.+||.+=.-||.-.+-.++++......=|+ |+|
T Consensus 15 ~~~~~evq~~L~~lGyy~g~~~g~~d~a~~~Al~~~~g~ENf--E~R 59 (74)
T PF08823_consen 15 GDVAREVQEALKRLGYYKGEADGVWDEATEDALRAWAGTENF--EER 59 (74)
T ss_pred HHHHHHHHHHHHHcCCccCCCCCcccHHHHHHHHHHHHHhhH--Hhh
Confidence 467899999999999988888988776666665544443333 555
No 52
>PRK08087 L-fuculose phosphate aldolase; Provisional
Probab=35.52 E-value=40 Score=29.08 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=27.3
Q ss_pred CcceeeCCCCCCChHHHHHHHHHHHHHHHhcceeEEecCCCC
Q 046780 66 IIPILDLDGVNKDAISRAKIVKQVQNACQNWGFFQIVNHGIP 107 (290)
Q Consensus 66 ~iPvIDls~l~~~~~~~~~~~~~l~~A~~~~GFF~l~nHGi~ 107 (290)
.||++.+.... -.++++.+.+++.+...+.+.|||+=
T Consensus 122 ~v~~~~y~~~g-----s~~la~~~~~~l~~~~~vLl~nHGv~ 158 (215)
T PRK08087 122 SIPCAPYATFG-----TRELSEHVALALKNRKATLLQHHGLI 158 (215)
T ss_pred CceeecCCCCC-----CHHHHHHHHHHhCcCCEEEecCCCCE
Confidence 47888765432 23667788888888888999999963
No 53
>PRK05834 hypothetical protein; Provisional
Probab=34.39 E-value=54 Score=27.86 Aligned_cols=52 Identities=15% Similarity=0.086 Sum_probs=30.9
Q ss_pred CcceeeCCCCCCChHHHHHHHHHHHHHHHhcc--eeEEecCCCC--HHHHHHHHHHHHH
Q 046780 66 IIPILDLDGVNKDAISRAKIVKQVQNACQNWG--FFQIVNHGIP--VSILDEMIDGVIG 120 (290)
Q Consensus 66 ~iPvIDls~l~~~~~~~~~~~~~l~~A~~~~G--FF~l~nHGi~--~~~~~~~~~~~~~ 120 (290)
+||++...... ...+..++.+.+++++.. .+.|.|||+= ...+++++..+..
T Consensus 121 ~ipv~~~~~~~---~~~~~la~~v~~~l~~~~~~avLL~nHGvv~~G~~l~eA~~~~e~ 176 (194)
T PRK05834 121 EISIYDPKDFD---DWYERADTEILRYLQEKNKNFVVIKGYGVYAYARDIYELAKKIAI 176 (194)
T ss_pred eeeecCccccc---hHHHhHHHHHHHHHhhcCCCEEEEcCCcceEECCCHHHHHHHHHH
Confidence 47877654331 112244677888888755 8999999953 2334455554444
No 54
>cd05796 Ribosomal_P0_like Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4). MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WAS
Probab=33.74 E-value=87 Score=25.78 Aligned_cols=40 Identities=10% Similarity=0.290 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHhcceeEEec-CCCCHHHHHHHHHHHHH
Q 046780 81 SRAKIVKQVQNACQNWGFFQIVN-HGIPVSILDEMIDGVIG 120 (290)
Q Consensus 81 ~~~~~~~~l~~A~~~~GFF~l~n-HGi~~~~~~~~~~~~~~ 120 (290)
.+.+.+++|.+.+.++-.++|++ +|++...++++.+..|.
T Consensus 2 ~K~~~v~~l~e~l~~y~~v~iv~~~gl~~~ql~~iR~~lr~ 42 (163)
T cd05796 2 LKQKLVENIREAVDKYKYIYVFSVDNMRNNKLKDIRQEWKD 42 (163)
T ss_pred hHHHHHHHHHHHHHhCCEEEEEEecCCCHHHHHHHHHHhcC
Confidence 35678899999999998777774 89999998888887664
No 55
>PRK06357 hypothetical protein; Provisional
Probab=33.49 E-value=57 Score=28.25 Aligned_cols=36 Identities=22% Similarity=0.378 Sum_probs=25.4
Q ss_pred CcceeeCCCCCCChHHHHHHHHHHHHHHHhc------ceeEEecCCC
Q 046780 66 IIPILDLDGVNKDAISRAKIVKQVQNACQNW------GFFQIVNHGI 106 (290)
Q Consensus 66 ~iPvIDls~l~~~~~~~~~~~~~l~~A~~~~------GFF~l~nHGi 106 (290)
.||++.+... ...++++.+.+++++. ..+.+.|||+
T Consensus 130 ~i~~~p~~~~-----gs~ela~~v~~~l~~~~~~~~~~~vLl~nHGv 171 (216)
T PRK06357 130 KIPTLPFAPA-----TSPELAEIVRKHLIELGDKAVPSAFLLNSHGI 171 (216)
T ss_pred CcceecccCC-----CcHHHHHHHHHHHhhcCcccCCCEEEECCCCC
Confidence 4677766543 1257777888888765 4888999995
No 56
>PRK03634 rhamnulose-1-phosphate aldolase; Provisional
Probab=33.21 E-value=42 Score=30.26 Aligned_cols=50 Identities=16% Similarity=0.077 Sum_probs=33.1
Q ss_pred CcceeeCCCCCCChHHHHHHHHHHHHHHHhcceeEEecCCCC--HHHHHHHHHHHHH
Q 046780 66 IIPILDLDGVNKDAISRAKIVKQVQNACQNWGFFQIVNHGIP--VSILDEMIDGVIG 120 (290)
Q Consensus 66 ~iPvIDls~l~~~~~~~~~~~~~l~~A~~~~GFF~l~nHGi~--~~~~~~~~~~~~~ 120 (290)
.||++.+... .-.++++.+.+++++...+.+.|||+= .+.+++++..+..
T Consensus 179 ~i~vvpy~~p-----gs~eLa~~v~~~l~~~~avLL~nHGvv~~G~~l~eA~~~~e~ 230 (274)
T PRK03634 179 GVGIVPWMVP-----GTDEIGQATAEKMQKHDLVLWPKHGVFGSGPTLDEAFGLIDT 230 (274)
T ss_pred ceeEecCCCC-----CCHHHHHHHHHHhccCCEEEEcCCCCeEecCCHHHHHHHHHH
Confidence 4778777543 224677888888888899999999963 2334444444433
No 57
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=32.96 E-value=89 Score=25.87 Aligned_cols=58 Identities=21% Similarity=0.226 Sum_probs=32.0
Q ss_pred cccccccCCCCCCCCCCCCcccccCCCe---eEEec--CCC-CCeEEee---CCcEEEeccCCCcEEEecCcc
Q 046780 223 FLLGHYYPTCPEPELTMGTDSHADSSFL---TVLLQ--DRL-GGLQVLH---ENEWVNVTPIYGALVVNLGDM 286 (290)
Q Consensus 223 ~lr~~yYPp~~~~~~~~g~~~HtD~g~l---TlL~q--d~v-~GLQV~~---~g~W~~V~p~pgalvVNiGD~ 286 (290)
...+|+|++ .. ++++|.|...+ ..+.. =+. .-+.+.. .+.++.|.-.+|.++|.-|++
T Consensus 98 ~~liN~Y~~-----g~-~i~~H~D~~~~~~~~~I~slSLG~~~~~~f~~~~~~~~~~~~~L~~gsl~vm~g~~ 164 (194)
T PF13532_consen 98 QCLINYYRD-----GS-GIGPHSDDEEYGFGPPIASLSLGSSRVFRFRNKSDDDEPIEVPLPPGSLLVMSGEA 164 (194)
T ss_dssp EEEEEEESS-----TT--EEEE---TTC-CCSEEEEEEEES-EEEEEEECGGTS-EEEEEE-TTEEEEEETTH
T ss_pred EEEEEecCC-----CC-CcCCCCCcccccCCCcEEEEEEccCceEEEeeccCCCccEEEEcCCCCEEEeChHH
Confidence 456899997 23 89999997633 11111 011 1133333 268999999999999998875
No 58
>cd05795 Ribosomal_P0_L10e Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e. P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.
Probab=32.74 E-value=1e+02 Score=25.66 Aligned_cols=40 Identities=13% Similarity=0.228 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHhcceeEEec-CCCCHHHHHHHHHHHHH
Q 046780 81 SRAKIVKQVQNACQNWGFFQIVN-HGIPVSILDEMIDGVIG 120 (290)
Q Consensus 81 ~~~~~~~~l~~A~~~~GFF~l~n-HGi~~~~~~~~~~~~~~ 120 (290)
.+.+.+++|.+.+.++-.++|++ .|++...++++.+..++
T Consensus 2 ~K~~~v~el~e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~ 42 (175)
T cd05795 2 WKKEYVEKLTELLKSYPKVLIVDADNVGSKQLQKIRRSLRG 42 (175)
T ss_pred hHHHHHHHHHHHHHhCCEEEEEEecCCChHHHHHHHHHhhC
Confidence 35678899999999999888875 88999988888887774
No 59
>TIGR01086 fucA L-fuculose phosphate aldolase. Members of this family are L-fuculose phosphate aldolase from various Proteobacteria, encoded in fucose utilization operons. Homologs in other bacteria given similar annotation may share extensive sequence similarity but are not experimenally characterized and are not found in apparent fucose utilization operons; we consider their annotation as L-fuculose phosphate aldolase to be tenuous. This model has been narrowed in scope from the previous version.
Probab=32.39 E-value=49 Score=28.49 Aligned_cols=36 Identities=17% Similarity=0.282 Sum_probs=26.0
Q ss_pred CcceeeCCCCCCChHHHHHHHHHHHHHHHhcceeEEecCCC
Q 046780 66 IIPILDLDGVNKDAISRAKIVKQVQNACQNWGFFQIVNHGI 106 (290)
Q Consensus 66 ~iPvIDls~l~~~~~~~~~~~~~l~~A~~~~GFF~l~nHGi 106 (290)
.||++.+.... -.++++.+.+++.+...+.|.|||+
T Consensus 121 ~i~~v~y~~~g-----s~~la~~v~~~~~~~~~vLL~nHG~ 156 (214)
T TIGR01086 121 NIPCVPYATFG-----STKLASEVVAGILKSKAILLLHHGL 156 (214)
T ss_pred CccccCCCCCC-----hHHHHHHHHHHhhhCCEEehhcCCC
Confidence 36666665432 2356778888888889999999995
No 60
>PRK04019 rplP0 acidic ribosomal protein P0; Validated
Probab=31.90 E-value=1.2e+02 Score=28.20 Aligned_cols=41 Identities=22% Similarity=0.379 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHhcceeEEec-CCCCHHHHHHHHHHHHH
Q 046780 80 ISRAKIVKQVQNACQNWGFFQIVN-HGIPVSILDEMIDGVIG 120 (290)
Q Consensus 80 ~~~~~~~~~l~~A~~~~GFF~l~n-HGi~~~~~~~~~~~~~~ 120 (290)
+.+.+.+++|.+.++++.+++|++ +|++...++++.+..|.
T Consensus 6 e~K~~~v~el~~~l~~~~~v~iv~~~gl~~~ql~~lR~~lr~ 47 (330)
T PRK04019 6 EWKKEEVEELKELIKSYPVVGIVDLEGIPARQLQEIRRKLRG 47 (330)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHc
Confidence 456677888888888888777775 67888877777777664
No 61
>PF00466 Ribosomal_L10: Ribosomal protein L10; InterPro: IPR001790 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. On the basis of sequence similarities the following prokaryotic and eukaryotic ribosomal proteins can be grouped: Bacterial 50S ribosomal protein L10; Archaebacterial acidic ribosomal protein P0 homologue (L10E); Eukaryotic 60S ribosomal protein P0 (L10E). This entry represents the ribosomal protein L10P family, with includes the above mentioned ribosomal proteins.; GO: 0042254 ribosome biogenesis, 0005622 intracellular; PDB: 3A1Y_G 3D5D_J 3PYT_I 3PYV_I 3D5B_J 3PYO_I 3PYR_I 3MS1_I 3MRZ_I 1VQ9_G ....
Probab=31.41 E-value=1.9e+02 Score=21.25 Aligned_cols=42 Identities=14% Similarity=0.264 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHhcceeEEe-cCCCCHHHHHHHHHHHHHh
Q 046780 80 ISRAKIVKQVQNACQNWGFFQIV-NHGIPVSILDEMIDGVIGF 121 (290)
Q Consensus 80 ~~~~~~~~~l~~A~~~~GFF~l~-nHGi~~~~~~~~~~~~~~F 121 (290)
+.+...+++|.+.+.++=.+.++ -+|++...+.++....+..
T Consensus 4 ~~K~~~v~~~~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~~~ 46 (100)
T PF00466_consen 4 EKKEEIVEELKELLKKSKYVIVVDYNGLSANQLQELRKELRKK 46 (100)
T ss_dssp HHHHHHHHHHHHHHHCSSEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 46778899999999999666665 5899998888887777664
No 62
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=31.37 E-value=65 Score=29.29 Aligned_cols=28 Identities=25% Similarity=0.547 Sum_probs=24.5
Q ss_pred HHHHHhcceeEEecCCCCHHHHHHHHHHHH
Q 046780 90 QNACQNWGFFQIVNHGIPVSILDEMIDGVI 119 (290)
Q Consensus 90 ~~A~~~~GFF~l~nHGi~~~~~~~~~~~~~ 119 (290)
.+++++.|||.|-| +|..++.++.+...
T Consensus 18 l~~lED~Gy~cvDN--lP~~Ll~~l~~~~~ 45 (284)
T PF03668_consen 18 LRALEDLGYYCVDN--LPPSLLPQLIELLA 45 (284)
T ss_pred HHHHHhcCeeEEcC--CcHHHHHHHHHHHH
Confidence 47899999999999 89999988887766
No 63
>PRK06557 L-ribulose-5-phosphate 4-epimerase; Validated
Probab=31.33 E-value=42 Score=28.97 Aligned_cols=49 Identities=14% Similarity=0.179 Sum_probs=31.1
Q ss_pred CcceeeCCCCCCChHHHHHHHHHHHHHH--HhcceeEEecCCCCH--HHHHHHHHHHH
Q 046780 66 IIPILDLDGVNKDAISRAKIVKQVQNAC--QNWGFFQIVNHGIPV--SILDEMIDGVI 119 (290)
Q Consensus 66 ~iPvIDls~l~~~~~~~~~~~~~l~~A~--~~~GFF~l~nHGi~~--~~~~~~~~~~~ 119 (290)
.||++.+... ...++++++.+++ .+...+.+.|||+=. +.+++++..+.
T Consensus 130 ~ip~~~y~~~-----g~~ela~~i~~~l~~~~~~~vll~nHG~~~~G~~~~eA~~~~e 182 (221)
T PRK06557 130 PIPVGPFALI-----GDEAIGKGIVETLKGGRSPAVLMQNHGVFTIGKDAEDAVKAAV 182 (221)
T ss_pred CeeccCCcCC-----CcHHHHHHHHHHhCcCCCCEEEECCCCceEEcCCHHHHHHHHH
Confidence 5787766543 2245677888888 677889999999632 23444444433
No 64
>COG0244 RplJ Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]
Probab=30.12 E-value=1.6e+02 Score=24.59 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHhcceeEEec-CCCCHHHHHHHHHHHHH
Q 046780 80 ISRAKIVKQVQNACQNWGFFQIVN-HGIPVSILDEMIDGVIG 120 (290)
Q Consensus 80 ~~~~~~~~~l~~A~~~~GFF~l~n-HGi~~~~~~~~~~~~~~ 120 (290)
+.+..++++|.+.+++...|.+++ +|++...+.++.+..|+
T Consensus 6 e~K~~~v~el~e~~~~s~~~~i~dy~Gl~~~ql~~lR~~lr~ 47 (175)
T COG0244 6 EWKKELVAELKELIKESPSVVIVDYRGLTVAQLTELRKKLRE 47 (175)
T ss_pred HHHHHHHHHHHHHHhhCCEEEEEEeCCCcHHHHHHHHHHHHh
Confidence 456788899999999988888776 79999988888887776
No 65
>TIGR03328 salvage_mtnB methylthioribulose-1-phosphate dehydratase. Members of this family are the methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway. This pathway allows methylthioadenosine, left over from polyamine biosynthesis, to be recycled to methionine.
Probab=29.98 E-value=65 Score=27.22 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=26.1
Q ss_pred CcceeeCCCCCCChHHHHHHHHHHHHHHH---hcceeEEecCCCC
Q 046780 66 IIPILDLDGVNKDAISRAKIVKQVQNACQ---NWGFFQIVNHGIP 107 (290)
Q Consensus 66 ~iPvIDls~l~~~~~~~~~~~~~l~~A~~---~~GFF~l~nHGi~ 107 (290)
.||+++. .. .-.++++.+.++++ +...+.|.|||+=
T Consensus 126 ~vp~~~~-~~-----gs~ela~~~~~~l~~~~~~~avll~nHGv~ 164 (193)
T TIGR03328 126 TIPIFEN-TQ-----DIARLADSVAPYLEAYPDVPGVLIRGHGLY 164 (193)
T ss_pred EEeeecC-CC-----ChHHHHHHHHHHHhcCCCCCEEEEcCCcce
Confidence 5888864 21 22467888888886 4788999999963
No 66
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO. ; PDB: 1R6Z_P 3MJ0_A 4EI1_A 4F3T_A 4EI3_A 1R4K_A.
Probab=29.70 E-value=58 Score=21.41 Aligned_cols=24 Identities=33% Similarity=0.656 Sum_probs=21.0
Q ss_pred CCeEEeeCCcEEEeccCCCcEEEec
Q 046780 259 GGLQVLHENEWVNVTPIYGALVVNL 283 (290)
Q Consensus 259 ~GLQV~~~g~W~~V~p~pgalvVNi 283 (290)
+|||+++ |-..+|.|..+-++|||
T Consensus 19 ~Gle~~r-G~~qSvRp~~~~l~lNv 42 (52)
T PF08699_consen 19 GGLEAWR-GFFQSVRPTQGGLLLNV 42 (52)
T ss_dssp TTEEEEE-EEEEEEEEETTEEEEEE
T ss_pred CcEEEeE-eEEeeeEEcCCCCEEEE
Confidence 5899986 68889999999999998
No 67
>TIGR02624 rhamnu_1P_ald rhamnulose-1-phosphate aldolase. Members of this family are the enzyme RhaD, rhamnulose-1-phosphate aldolase.
Probab=29.64 E-value=42 Score=30.20 Aligned_cols=50 Identities=16% Similarity=0.076 Sum_probs=33.4
Q ss_pred CcceeeCCCCCCChHHHHHHHHHHHHHHHhcceeEEecCCCC--HHHHHHHHHHHHH
Q 046780 66 IIPILDLDGVNKDAISRAKIVKQVQNACQNWGFFQIVNHGIP--VSILDEMIDGVIG 120 (290)
Q Consensus 66 ~iPvIDls~l~~~~~~~~~~~~~l~~A~~~~GFF~l~nHGi~--~~~~~~~~~~~~~ 120 (290)
.||++.+... .-.++++.+.+++++..-+.+.|||+= -..+++++..+..
T Consensus 177 ~i~vvp~~~p-----Gs~eLA~~v~~~l~~~~avLL~nHGvva~G~~l~eA~~~~E~ 228 (270)
T TIGR02624 177 GVGIIPWMVP-----GTNEIGEATAEKMKEHRLVLWPHHGIFGAGPSLDETFGLIET 228 (270)
T ss_pred ccccccCcCC-----CCHHHHHHHHHHhccCCEEEEcCCCCeEecCCHHHHHHHHHH
Confidence 4788776542 224778889999999999999999953 2234444444433
No 68
>cd05797 Ribosomal_L10 Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-in
Probab=29.15 E-value=1.8e+02 Score=23.43 Aligned_cols=40 Identities=15% Similarity=0.276 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHhcceeEEec-CCCCHHHHHHHHHHHHH
Q 046780 81 SRAKIVKQVQNACQNWGFFQIVN-HGIPVSILDEMIDGVIG 120 (290)
Q Consensus 81 ~~~~~~~~l~~A~~~~GFF~l~n-HGi~~~~~~~~~~~~~~ 120 (290)
.+...+++|.+.+++..++++++ +|++.+.+.++.+..++
T Consensus 4 ~K~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~ 44 (157)
T cd05797 4 KKEEIVAELKEKLKEAKSVVVADYRGLTVAQLTELRKELRE 44 (157)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHH
Confidence 45677788888888888777776 57887777777666653
No 69
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=28.85 E-value=52 Score=21.99 Aligned_cols=17 Identities=35% Similarity=0.495 Sum_probs=13.3
Q ss_pred CeEEeeCCcEEEeccCC
Q 046780 260 GLQVLHENEWVNVTPIY 276 (290)
Q Consensus 260 GLQV~~~g~W~~V~p~p 276 (290)
=+||..+++|+.+.|.+
T Consensus 52 W~ev~~~~~W~~~D~~~ 68 (68)
T smart00460 52 WAEVYLEGGWVPVDPTP 68 (68)
T ss_pred EEEEEECCCeEEEeCCC
Confidence 46777789999998864
No 70
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=28.57 E-value=3.3e+02 Score=23.63 Aligned_cols=57 Identities=19% Similarity=0.086 Sum_probs=33.8
Q ss_pred ccccccCCCCCCCCCCCCcccccCC-----CeeEEecCCCCC-eEEe---eCCcEEEeccCCCcEEEecCcc
Q 046780 224 LLGHYYPTCPEPELTMGTDSHADSS-----FLTVLLQDRLGG-LQVL---HENEWVNVTPIYGALVVNLGDM 286 (290)
Q Consensus 224 lr~~yYPp~~~~~~~~g~~~HtD~g-----~lTlL~qd~v~G-LQV~---~~g~W~~V~p~pgalvVNiGD~ 286 (290)
..+|+|.+- . +++.|.|-. ..-+-+.=+.+. +.+. +.+.+..+.-..|.++|.-|++
T Consensus 118 ~LvN~Y~~G-----~-~mg~H~D~~E~~~~~pI~SvSLG~~~~F~~~~~~~~~~~~~l~L~~Gdllvm~G~s 183 (213)
T PRK15401 118 CLINRYAPG-----A-KLSLHQDKDERDFRAPIVSVSLGLPAVFQFGGLKRSDPLQRILLEHGDVVVWGGPS 183 (213)
T ss_pred EEEEeccCc-----C-ccccccCCCcccCCCCEEEEeCCCCeEEEecccCCCCceEEEEeCCCCEEEECchH
Confidence 568999963 2 789999942 111111111111 1221 2356889999999999988874
No 71
>PRK06754 mtnB methylthioribulose-1-phosphate dehydratase; Reviewed
Probab=27.86 E-value=62 Score=27.76 Aligned_cols=35 Identities=31% Similarity=0.486 Sum_probs=26.0
Q ss_pred CcceeeCCCCCCChHHHHHHHHHHHHHHH-hcceeEEecCCC
Q 046780 66 IIPILDLDGVNKDAISRAKIVKQVQNACQ-NWGFFQIVNHGI 106 (290)
Q Consensus 66 ~iPvIDls~l~~~~~~~~~~~~~l~~A~~-~~GFF~l~nHGi 106 (290)
.||+++.-. + -+++++.+.++++ +...+.+.|||+
T Consensus 137 ~vpv~~~~~---~---~~eLa~~v~~~l~~~~~avLl~nHG~ 172 (208)
T PRK06754 137 HIPIIENHA---D---IPTLAEEFAKHIQGDSGAVLIRNHGI 172 (208)
T ss_pred EEEEecCCC---C---HHHHHHHHHHHhccCCcEEEECCCce
Confidence 478885211 1 2478888999987 888999999995
No 72
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=27.81 E-value=2.5e+02 Score=25.90 Aligned_cols=15 Identities=7% Similarity=0.029 Sum_probs=11.8
Q ss_pred CCHHHHHHHHHHHHH
Q 046780 106 IPVSILDEMIDGVIG 120 (290)
Q Consensus 106 i~~~~~~~~~~~~~~ 120 (290)
++++.++.+++.++.
T Consensus 63 Ls~~Ecd~Li~la~~ 77 (310)
T PLN00052 63 LSDAECDHLVKLAKK 77 (310)
T ss_pred CCHHHHHHHHHhccc
Confidence 678888888887765
No 73
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=25.90 E-value=1e+02 Score=20.34 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhhh
Q 046780 189 KKTTELALTLFELISEALGLNANRL 213 (290)
Q Consensus 189 ~~~~~l~~~ll~~la~~Lgl~~~~~ 213 (290)
++..+|+..|..++++.||.+++..
T Consensus 14 e~K~~l~~~it~~~~~~lg~~~~~i 38 (60)
T PF01361_consen 14 EQKRELAEAITDAVVEVLGIPPERI 38 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-GGGE
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCeE
Confidence 4457889999999999999987654
No 74
>COG2450 Uncharacterized conserved protein [Function unknown]
Probab=25.35 E-value=1.2e+02 Score=24.01 Aligned_cols=35 Identities=14% Similarity=0.213 Sum_probs=28.3
Q ss_pred CcceeeCCCCCCChHHHHHHHHHHHHHHHhcceeE
Q 046780 66 IIPILDLDGVNKDAISRAKIVKQVQNACQNWGFFQ 100 (290)
Q Consensus 66 ~iPvIDls~l~~~~~~~~~~~~~l~~A~~~~GFF~ 100 (290)
+|-+.|++.+..++.....++++++.-.+++|-+.
T Consensus 65 NIvIaDit~l~~d~~~~~~V~e~lr~~a~~~ggdi 99 (124)
T COG2450 65 NIVIADITPLERDDDLFERVIEELRDTAEEVGGDI 99 (124)
T ss_pred CEEEEEcCCcccChhHHHHHHHHHHHHHHHhCchh
Confidence 68888999987677778888889988888887554
No 75
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=24.86 E-value=1e+02 Score=20.74 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhhh
Q 046780 189 KKTTELALTLFELISEALGLNANRL 213 (290)
Q Consensus 189 ~~~~~l~~~ll~~la~~Lgl~~~~~ 213 (290)
++-++|...|.+++++.||++++.+
T Consensus 15 eqk~~l~~~it~~l~~~lg~p~~~v 39 (64)
T PRK01964 15 EKIKNLIREVTEAISATLDVPKERV 39 (64)
T ss_pred HHHHHHHHHHHHHHHHHhCcChhhE
Confidence 4457888899999999999997654
No 76
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=24.70 E-value=1.3e+02 Score=25.55 Aligned_cols=38 Identities=29% Similarity=0.348 Sum_probs=23.1
Q ss_pred CCeeEEecCCCCCeEE-------eeCCcEEEeccCCCcEEEecCcc
Q 046780 248 SFLTVLLQDRLGGLQV-------LHENEWVNVTPIYGALVVNLGDM 286 (290)
Q Consensus 248 g~lTlL~qd~v~GLQV-------~~~g~W~~V~p~pgalvVNiGD~ 286 (290)
|-=.+|+|+. .|.+| ...|.=+-|||-=++.+||+||-
T Consensus 92 G~g~~lLq~~-~~~~~~~~~~v~~~~G~~v~IPp~yaH~tIN~g~~ 136 (182)
T PF06560_consen 92 GEGLILLQKE-EGDDVGDVIAVEAKPGDVVYIPPGYAHRTINTGDE 136 (182)
T ss_dssp SSEEEEEE-T-TS-----EEEEEE-TTEEEEE-TT-EEEEEE-SSS
T ss_pred CEEEEEEEec-CCCcceeEEEEEeCCCCEEEECCCceEEEEECCCC
Confidence 3456788863 44222 23699999999999999999985
No 77
>PRK06661 hypothetical protein; Provisional
Probab=24.30 E-value=71 Score=27.95 Aligned_cols=25 Identities=20% Similarity=0.167 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhcceeEEecCCCC
Q 046780 83 AKIVKQVQNACQNWGFFQIVNHGIP 107 (290)
Q Consensus 83 ~~~~~~l~~A~~~~GFF~l~nHGi~ 107 (290)
.+..+.+.+++++...+.+.|||+=
T Consensus 137 ~~~~~~~a~~l~~~~avll~nHG~v 161 (231)
T PRK06661 137 DKQSSRLVNDLKQNYVMLLRNHGAI 161 (231)
T ss_pred hhHHHHHHHHhCCCCEEEECCCCCe
Confidence 4567788899999999999999953
No 78
>PRK00099 rplJ 50S ribosomal protein L10; Reviewed
Probab=24.29 E-value=2.5e+02 Score=23.10 Aligned_cols=40 Identities=13% Similarity=0.227 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHhcceeEEec-CCCCHHHHHHHHHHHHH
Q 046780 81 SRAKIVKQVQNACQNWGFFQIVN-HGIPVSILDEMIDGVIG 120 (290)
Q Consensus 81 ~~~~~~~~l~~A~~~~GFF~l~n-HGi~~~~~~~~~~~~~~ 120 (290)
.+.+.+++|.+.++++-++++++ +|++...+.++.+..++
T Consensus 5 ~K~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~ 45 (172)
T PRK00099 5 EKKEIVAELAEKLKKAQSAVVADYRGLTVAQMTELRKKLRE 45 (172)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHH
Confidence 45566777777777776666665 46777666666665554
No 79
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=24.22 E-value=1.1e+02 Score=20.24 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhhh
Q 046780 189 KKTTELALTLFELISEALGLNANRL 213 (290)
Q Consensus 189 ~~~~~l~~~ll~~la~~Lgl~~~~~ 213 (290)
++-++|...|.+.+++.+|++++..
T Consensus 15 eqk~~l~~~it~~l~~~~~~p~~~v 39 (61)
T PRK02220 15 EQLKALVKDVTAAVSKNTGAPAEHI 39 (61)
T ss_pred HHHHHHHHHHHHHHHHHhCcChhhE
Confidence 3457889999999999999987654
No 80
>cd00398 Aldolase_II Class II Aldolase and Adducin head (N-terminal) domain. Aldolases are ubiquitous enzymes catalyzing central steps of carbohydrate metabolism. Based on enzymatic mechanisms, this superfamily has been divided into two distinct classes (Class I and II). Class II enzymes are further divided into two sub-classes A and B. This family includes class II A aldolases and adducins which has not been ascribed any enzymatic function. Members of this class are primarily bacterial and eukaryotic in origin and include L-fuculose-1-phosphate, L-rhamnulose-1-phosphate aldolases and L-ribulose-5-phosphate 4-epimerases. They all share the ability to promote carbon-carbon bond cleavage and stabilize enolate intermediates using divalent cations.
Probab=24.15 E-value=51 Score=28.12 Aligned_cols=40 Identities=20% Similarity=0.046 Sum_probs=27.6
Q ss_pred CCcceeeCCCCCCChHHHHHHHHHHHHHHHhcceeEEecCCCC
Q 046780 65 FIIPILDLDGVNKDAISRAKIVKQVQNACQNWGFFQIVNHGIP 107 (290)
Q Consensus 65 ~~iPvIDls~l~~~~~~~~~~~~~l~~A~~~~GFF~l~nHGi~ 107 (290)
..||++++.... ....+.++.+.+++.+.-.+.+.|||+=
T Consensus 121 ~~ip~~~~~~~~---~~~~~la~~~~~~l~~~~~vll~nHG~~ 160 (209)
T cd00398 121 GDIPCTPYMTPE---TGEDEIGTQRALGFPNSKAVLLRNHGLF 160 (209)
T ss_pred CCeeecCCcCCC---ccHHHHHHHHhcCCCcCCEEEEcCCCCe
Confidence 468998876531 0223556667777778889999999953
No 81
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=23.63 E-value=64 Score=21.21 Aligned_cols=21 Identities=14% Similarity=0.471 Sum_probs=16.7
Q ss_pred CCcEEEeccCCCcEEEecCccccc
Q 046780 266 ENEWVNVTPIYGALVVNLGDMMQA 289 (290)
Q Consensus 266 ~g~W~~V~p~pgalvVNiGD~Lei 289 (290)
+|+++.|+-.++ +++|+..++
T Consensus 14 dGeF~~ik~~~~---~~vG~eI~~ 34 (56)
T PF12791_consen 14 DGEFIKIKRKPG---MEVGQEIEF 34 (56)
T ss_pred CCcEEEEeCCCC---CcccCEEEE
Confidence 589999988888 788887653
No 82
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=23.09 E-value=99 Score=20.60 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhhh
Q 046780 189 KKTTELALTLFELISEALGLNANRL 213 (290)
Q Consensus 189 ~~~~~l~~~ll~~la~~Lgl~~~~~ 213 (290)
++-++|+..|.+++++.+|.+++.+
T Consensus 15 EqK~~L~~~it~a~~~~~~~p~~~v 39 (60)
T PRK02289 15 EQKNALAREVTEVVSRIAKAPKEAI 39 (60)
T ss_pred HHHHHHHHHHHHHHHHHhCcCcceE
Confidence 3457899999999999999987654
No 83
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=22.83 E-value=43 Score=19.23 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=12.0
Q ss_pred eEEecCCCCHHHHHHHH
Q 046780 99 FQIVNHGIPVSILDEMI 115 (290)
Q Consensus 99 F~l~nHGi~~~~~~~~~ 115 (290)
.||..||++.+.+.+-+
T Consensus 9 rYV~eh~ls~ee~~~RL 25 (28)
T PF12368_consen 9 RYVKEHGLSEEEVAERL 25 (28)
T ss_pred hhHHhcCCCHHHHHHHH
Confidence 47788999987665433
No 84
>TIGR00370 conserved hypothetical protein TIGR00370.
Probab=22.48 E-value=1.6e+02 Score=25.23 Aligned_cols=49 Identities=16% Similarity=0.218 Sum_probs=30.3
Q ss_pred CCCCCCCcccccCCCeeEEe-cCCCCCeEE--eeCCcEEEeccCCCcEEEecCccccc
Q 046780 235 PELTMGTDSHADSSFLTVLL-QDRLGGLQV--LHENEWVNVTPIYGALVVNLGDMMQA 289 (290)
Q Consensus 235 ~~~~~g~~~HtD~g~lTlL~-qd~v~GLQV--~~~g~W~~V~p~pgalvVNiGD~Lei 289 (290)
|...+|++ |.-|-++ .+..+|-|+ +..-.|.+.. .....+...||.+++
T Consensus 150 PaGSVgIa-----g~qt~IYp~~sPGGW~iIGrTp~~lfd~~-~~~p~ll~~GD~VrF 201 (202)
T TIGR00370 150 PAGSVGIG-----GLQTGVYPISTPGGWQLIGKTPLALFDPQ-ENPPTLLRAGDIVKF 201 (202)
T ss_pred CCceeEEc-----ccceEEEccCCCCcceEeeecchhhhCCC-CCCCcccCCCCEEEe
Confidence 34455555 4466777 456788888 3444454432 345578899998875
No 85
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=22.42 E-value=1.1e+02 Score=19.77 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhhh
Q 046780 189 KKTTELALTLFELISEALGLNANRL 213 (290)
Q Consensus 189 ~~~~~l~~~ll~~la~~Lgl~~~~~ 213 (290)
++-++|+..|.+++++.+|.+++.+
T Consensus 14 eqk~~l~~~i~~~l~~~~g~~~~~v 38 (58)
T cd00491 14 EQKRELIERVTEAVSEILGAPEATI 38 (58)
T ss_pred HHHHHHHHHHHHHHHHHhCcCcccE
Confidence 4557889999999999999987543
No 86
>PF11043 DUF2856: Protein of unknown function (DUF2856); InterPro: IPR020500 This phage protein modulates the activity of the host recBCD nuclease and thus protects the linear double stranded DNA from exonuclease degradation [].
Probab=22.23 E-value=1.1e+02 Score=22.16 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHhccCCHHHHhh
Q 046780 109 SILDEMIDGVIGFHEQDTEVKKK 131 (290)
Q Consensus 109 ~~~~~~~~~~~~FF~LP~eeK~~ 131 (290)
++++.+...-..|.+||.|+|..
T Consensus 21 EVL~~~k~N~D~~~aL~~ETKaE 43 (97)
T PF11043_consen 21 EVLDNIKNNYDAFMALPPETKAE 43 (97)
T ss_pred HHHHHHHHHHHHHHcCChhhHHH
Confidence 45566667777899999999864
No 87
>PF10055 DUF2292: Uncharacterized small protein (DUF2292); InterPro: IPR018743 Members of this family of hypothetical bacterial proteins have no known function.
Probab=22.22 E-value=61 Score=20.04 Aligned_cols=20 Identities=20% Similarity=0.233 Sum_probs=14.0
Q ss_pred ccCCCeeEEecCCCCCeEEee
Q 046780 245 ADSSFLTVLLQDRLGGLQVLH 265 (290)
Q Consensus 245 tD~g~lTlL~qd~v~GLQV~~ 265 (290)
-.+|.+||..||+. =.||.+
T Consensus 13 i~yGsV~iiiqdG~-vvQIe~ 32 (38)
T PF10055_consen 13 IRYGSVTIIIQDGR-VVQIEK 32 (38)
T ss_pred CCcceEEEEEECCE-EEEEEh
Confidence 35899999999863 245543
No 88
>PRK15331 chaperone protein SicA; Provisional
Probab=22.02 E-value=1e+02 Score=25.69 Aligned_cols=42 Identities=21% Similarity=0.360 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHhcc
Q 046780 81 SRAKIVKQVQNACQNWGFFQIVNHGIPVSILDEMIDGVIGFHE 123 (290)
Q Consensus 81 ~~~~~~~~l~~A~~~~GFF~l~nHGi~~~~~~~~~~~~~~FF~ 123 (290)
..++.++.|.+|+.+ |-=.-.-|||+++.++.++..+..||.
T Consensus 8 ~~~~~~~~i~~al~~-G~tlk~l~gis~~~le~iY~~Ay~~y~ 49 (165)
T PRK15331 8 SEERVAEMIWDAVSE-GATLKDVHGIPQDMMDGLYAHAYEFYN 49 (165)
T ss_pred hHHHHHHHHHHHHHC-CCCHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 345677888888887 422233589999999999999999997
No 89
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=21.55 E-value=1.2e+02 Score=20.11 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhhh
Q 046780 189 KKTTELALTLFELISEALGLNANRL 213 (290)
Q Consensus 189 ~~~~~l~~~ll~~la~~Lgl~~~~~ 213 (290)
++-++|++.|.++++..||++++.+
T Consensus 15 eqK~~l~~~it~~l~~~lg~~~~~v 39 (63)
T TIGR00013 15 EQKRQLIEGVTEAMAETLGANLESI 39 (63)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccE
Confidence 3456888899999999999987643
No 90
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=21.42 E-value=1.3e+02 Score=19.78 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhhh
Q 046780 189 KKTTELALTLFELISEALGLNANRL 213 (290)
Q Consensus 189 ~~~~~l~~~ll~~la~~Lgl~~~~~ 213 (290)
++-++|+..|.+++++.||++++.+
T Consensus 15 eqk~~l~~~it~~l~~~~~~p~~~v 39 (62)
T PRK00745 15 EQKRKLVEEITRVTVETLGCPPESV 39 (62)
T ss_pred HHHHHHHHHHHHHHHHHcCCChhHE
Confidence 3457889999999999999987654
No 91
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=21.17 E-value=2e+02 Score=27.70 Aligned_cols=54 Identities=13% Similarity=0.293 Sum_probs=40.9
Q ss_pred eeCCCCC--CChHHHHHHHHHHHHH------------HHhcceeEEecCCCCHHHHHHHHHHHHHhcc
Q 046780 70 LDLDGVN--KDAISRAKIVKQVQNA------------CQNWGFFQIVNHGIPVSILDEMIDGVIGFHE 123 (290)
Q Consensus 70 IDls~l~--~~~~~~~~~~~~l~~A------------~~~~GFF~l~nHGi~~~~~~~~~~~~~~FF~ 123 (290)
+||+.+. .+-.+.-++.++|..+ |.+-|.|.|+--...+++++-+++-.+.|-+
T Consensus 393 vDlr~lL~s~tfe~El~Lw~~i~~~vklnlSpG~s~~C~EpGWFRvcFAn~~~~t~~~am~Ri~~~~~ 460 (471)
T KOG0256|consen 393 VDLRKLLTSLTFEGELELWERILDNVKLNLSPGSSCHCHEPGWFRVCFANMSEETLEVAMRRLKQFLD 460 (471)
T ss_pred EEhHHhcCcCChHHHHHHHHHHHHhhccccCCCCcceecCCCeEEEEeccCCHHHHHHHHHHHHHHHH
Confidence 5888765 2233444566788877 8999999999998999998877777777755
No 92
>PF11548 Receptor_IA-2: Protein-tyrosine phosphatase receptor IA-2; InterPro: IPR021613 IA-2 is a protein-tyrosine phosphatase receptor that upon exocytosis, the cytoplasmic domain is cleaved and moves to the nucleus where it enhances transcription of the insulin gene. The mature exodomain of IA-2 participates in adhesion to the extracellular matrix and is self-proteolyzed in vitro by reactive oxygen species which may be a new shedding mechanism. ; PDB: 2QT7_B 3N01_B 3N4W_B 3NG8_A.
Probab=20.77 E-value=77 Score=23.64 Aligned_cols=32 Identities=16% Similarity=0.183 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHcCCChhhhhhc-ccCCCccccc
Q 046780 195 ALTLFELISEALGLNANRLKDM-DCAEGLFLLG 226 (290)
Q Consensus 195 ~~~ll~~la~~Lgl~~~~~~~~-~~~~~~~lr~ 226 (290)
+.+|++.+++-|+|+...|.+. ...+...+|+
T Consensus 19 G~~l~~~la~~l~l~s~~F~~i~V~g~avTFrv 51 (91)
T PF11548_consen 19 GSRLMEKLAELLHLPSSSFINISVVGPAVTFRV 51 (91)
T ss_dssp HHHHHHHHHHHHTS-GGGEEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHhCCCcccceeeeecCceEEEEe
Confidence 6788999999999999999875 3333333443
Done!