BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046781
(142 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CYG|A Chain A, Crystal Structure At 1.45- Resolution Of The Major
Allergen Endo-Beta-1,3-Glucanase Of Banana As A
Molecular Basis For The Latex-Fruit Syndrome
Length = 312
Score = 101 bits (251), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 73/116 (62%), Gaps = 1/116 (0%)
Query: 28 IGFCYGKLENDLPSATDVINPYKKYSIGKIRLFDPNDAALNALRGSQIDVTLGVRNEDLP 87
IG CYG L N+LP ++V++ YK +I ++RL+DPN AAL ALR S I V L V D+
Sbjct: 1 IGVCYGMLGNNLPPPSEVVSLYKSNNIARMRLYDPNQAALQALRNSNIQVLLDVPRSDVQ 60
Query: 88 NLAASQDAANSWFATNMEPYLKDVVFSLIAVGNQVIP-REFCQYVLPVMQILNNIL 142
+LA++ AA W N+ Y V F IAVGN++IP + QY+LP M+ + N L
Sbjct: 61 SLASNPSAAGDWIRRNVVAYWPSVSFRYIAVGNELIPGSDLAQYILPAMRNIYNAL 116
>pdb|3EM5|A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|B Chain B, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|C Chain C, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|D Chain D, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3F55|A Chain A, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|B Chain B, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|C Chain C, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|D Chain D, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
Length = 316
Score = 92.0 bits (227), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 68/114 (59%), Gaps = 6/114 (5%)
Query: 28 IGFCYGKLENDLPSATDVINPYKKYSIGKIRLFDPNDAALNALRGSQIDVTLGVRNEDLP 87
+G CYG N+LP ++VI YKK +I ++R++DPN A L ALRGS I++ LGV N DL
Sbjct: 2 VGVCYGMQGNNLPPVSEVIALYKKSNITRMRIYDPNQAVLEALRGSNIELILGVPNSDLQ 61
Query: 88 NLAASQDAANSWFATNMEPYLKDVVFSLIAVGNQVIPRE-----FCQYVLPVMQ 136
+L + A SW N+ + V F IAVGN++ P Q+VLP M+
Sbjct: 62 SLTNPSN-AKSWVQKNVRGFWSSVRFRYIAVGNEISPVNRGTAWLAQFVLPAMR 114
>pdb|4GZI|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose
pdb|4GZJ|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose And Laminaratetrose
Length = 323
Score = 89.4 bits (220), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 72/119 (60%), Gaps = 5/119 (4%)
Query: 28 IGFCYGKLENDLPSATDVINPYKKYSIGKIRLFDPNDAALNALRGSQIDVTLGVRNEDLP 87
IG CYGK+ N+LPS DVI Y +I K+R++ P+ NAL+GS I++ L V N+DL
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLE 62
Query: 88 NLAASQDAANSWFATNMEPYLKDVVFSLIAVGNQVIP-RE---FCQYVLPVMQILNNIL 142
LA + AN W N+ + DV F IAVGN+V P RE + ++V P M+ + N L
Sbjct: 63 ALANPSN-ANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNAL 120
>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR7|B Chain B, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|A Chain A, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|B Chain B, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
Length = 323
Score = 89.4 bits (220), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 72/119 (60%), Gaps = 5/119 (4%)
Query: 28 IGFCYGKLENDLPSATDVINPYKKYSIGKIRLFDPNDAALNALRGSQIDVTLGVRNEDLP 87
IG CYGK+ N+LPS DVI Y +I K+R++ P+ NAL+GS I++ L V N+DL
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLE 62
Query: 88 NLAASQDAANSWFATNMEPYLKDVVFSLIAVGNQVIP-RE---FCQYVLPVMQILNNIL 142
LA + AN W N+ + DV F IAVGN+V P RE + ++V P M+ + N L
Sbjct: 63 ALANPSN-ANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNAL 120
>pdb|1GHS|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
pdb|1GHS|B Chain B, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 82.4 bits (202), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Query: 28 IGFCYGKLENDLPSATDVINPYKKYSIGKIRLFDPNDAALNALRGSQIDVTLGVRNEDLP 87
IG CYG + N+LPS +DV+ Y+ I +R++ + AL+ALR S I + L + N+ L
Sbjct: 1 IGVCYGVIGNNLPSRSDVVQLYRSKGINGMRIYFADGQALSALRNSGIGLILDIGNDQLA 60
Query: 88 NLAASQDAANSWFATNMEPYLKDVVFSLIAVGNQVIPREFCQYVLPVMQILN 139
N+AAS A SW N+ PY V IA GN+V Q +LP M+ LN
Sbjct: 61 NIAASTSNAASWVQNNVRPYYPAVNIKYIAAGNEVQGGA-TQSILPAMRNLN 111
>pdb|1AQ0|A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1AQ0|B Chain B, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1GHR|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 28 IGFCYGKLENDLPSATDVINPYKKYSIGKIRLFDPNDAALNALRGSQIDVTLGVRNEDLP 87
IG CYG N+LP+A+ V++ +K I +RL+ PN AAL A+ G+ I+V +G N+ L
Sbjct: 1 IGVCYGMSANNLPAASTVVSMFKSNGIKSMRLYAPNQAALQAVGGTGINVVVGAPNDVLS 60
Query: 88 NLAASQDAANSWFATNMEPYLKDVVFSLIAVGNQV 122
NLAAS AA SW +N++ Y K V F + VGN+V
Sbjct: 61 NLAASPAAAASWVKSNIQAYPK-VSFRYVCVGNEV 94
>pdb|3TON|A Chain A, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|3TON|B Chain B, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|3TOP|A Chain A, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
pdb|3TOP|B Chain B, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
Length = 908
Score = 27.7 bits (60), Expect = 2.4, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 21 EASNSNDIGFCYGKLENDLPSATDV 45
EASNS+ + FCY NDL S +DV
Sbjct: 35 EASNSSGVPFCY--FVNDLYSVSDV 57
>pdb|3CQD|A Chain A, Structure Of The Tetrameric Inhibited Form Of
Phosphofructokinase-2 From Escherichia Coli
pdb|3CQD|B Chain B, Structure Of The Tetrameric Inhibited Form Of
Phosphofructokinase-2 From Escherichia Coli
pdb|3N1C|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3N1C|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3N1C|C Chain C, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3N1C|D Chain D, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3UMO|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Potassium
pdb|3UMO|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Potassium
pdb|3UMP|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Cesium And Atp
pdb|3UMP|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Cesium And Atp
pdb|3UQD|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
pdb|3UQD|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
pdb|3UQD|C Chain C, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
pdb|3UQD|D Chain D, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
Length = 309
Score = 26.2 bits (56), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 14/81 (17%)
Query: 53 SIGKIRLFDPNDAALNALRGSQIDVTLGVRNEDLPNLAASQDAANSWFATNMEPYLKDVV 112
+IG I L PN L+AL ++ VR A+Q+ NS A K VV
Sbjct: 177 AIGNIELVKPNQKELSALVNRELTQPDDVRK-------AAQEIVNSGKA-------KRVV 222
Query: 113 FSLIAVGNQVIPREFCQYVLP 133
SL G + E C V+P
Sbjct: 223 VSLGPQGALGVDSENCIQVVP 243
>pdb|3UQE|A Chain A, Crystal Structure Of The Phosphofructokinase-2 Mutant Y23d
From Escherichia Coli
pdb|3UQE|B Chain B, Crystal Structure Of The Phosphofructokinase-2 Mutant Y23d
From Escherichia Coli
Length = 309
Score = 26.2 bits (56), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 14/81 (17%)
Query: 53 SIGKIRLFDPNDAALNALRGSQIDVTLGVRNEDLPNLAASQDAANSWFATNMEPYLKDVV 112
+IG I L PN L+AL ++ VR A+Q+ NS A K VV
Sbjct: 177 AIGNIELVKPNQKELSALVNRELTQPDDVRK-------AAQEIVNSGKA-------KRVV 222
Query: 113 FSLIAVGNQVIPREFCQYVLP 133
SL G + E C V+P
Sbjct: 223 VSLGPQGALGVDSENCIQVVP 243
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,054,523
Number of Sequences: 62578
Number of extensions: 155437
Number of successful extensions: 316
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 307
Number of HSP's gapped (non-prelim): 16
length of query: 142
length of database: 14,973,337
effective HSP length: 89
effective length of query: 53
effective length of database: 9,403,895
effective search space: 498406435
effective search space used: 498406435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)