BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046783
         (830 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3J1Z|P Chain P, Inward-facing Conformation Of The Zinc Transporter Yiip
           Revealed By Cryo-electron Microscopy
 pdb|3J1Z|Q Chain Q, Inward-facing Conformation Of The Zinc Transporter Yiip
           Revealed By Cryo-electron Microscopy
          Length = 306

 Score = 37.0 bits (84), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 6/112 (5%)

Query: 410 LSERKSRKIALFLLINTGYMVVEFVAGFMSNSLGLISDACHMLFDCAALAIGLYASYISR 469
           L+ R S   AL L+       ++ +A   S S  +++       D  A  I   A   + 
Sbjct: 13  LASRASVATALTLI------TIKLLAWLYSGSASMLASLTDSFADTLASIINFIAIRYAI 66

Query: 470 LPANSQFNYGRGRFEVLSGYTNAVFLVLVGALIVLESFERILDPQEISTNSL 521
           +PA+    YG G+ E L+    + F++    L++    ER+L+P  +   +L
Sbjct: 67  VPADHDHRYGHGKAEPLAALAQSAFIMGSAFLLLFYGGERLLNPSPVENATL 118


>pdb|2QFI|A Chain A, Structure Of The Zinc Transporter Yiip
 pdb|2QFI|B Chain B, Structure Of The Zinc Transporter Yiip
          Length = 300

 Score = 32.0 bits (71), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/109 (18%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 429 MVVEFVAGFMSNSLGLISDACHMLFDCAALAIGLYASYISRLPANSQFNYGRGRFEVLSG 488
           ++++  A + + S+ +++     L D  A    L     S  PA+   ++G G+ E L+ 
Sbjct: 24  LLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAA 83

Query: 489 YTNAVFLVLVGALIVLESFERILDPQEISTNSLLTVSIGGLLVNVIGLI 537
              ++F+      + L   + ++ P  ++   +      G++V ++ LI
Sbjct: 84  LAQSMFISGSALFLFLTGIQHLISPTPMTDPGV------GVIVTIVALI 126


>pdb|3H90|A Chain A, Structural Basis For The Autoregulation Of The Zinc
           Transporter Yiip
 pdb|3H90|B Chain B, Structural Basis For The Autoregulation Of The Zinc
           Transporter Yiip
 pdb|3H90|C Chain C, Structural Basis For The Autoregulation Of The Zinc
           Transporter Yiip
 pdb|3H90|D Chain D, Structural Basis For The Autoregulation Of The Zinc
           Transporter Yiip
          Length = 283

 Score = 32.0 bits (71), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/109 (18%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 429 MVVEFVAGFMSNSLGLISDACHMLFDCAALAIGLYASYISRLPANSQFNYGRGRFEVLSG 488
           ++++  A + + S+ +++     L D  A    L     S  PA+   ++G G+ E L+ 
Sbjct: 17  LLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAA 76

Query: 489 YTNAVFLVLVGALIVLESFERILDPQEISTNSLLTVSIGGLLVNVIGLI 537
              ++F+      + L   + ++ P  ++   +      G++V ++ LI
Sbjct: 77  LAQSMFISGSALFLFLTGIQHLISPTPMTDPGV------GVIVTIVALI 119


>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
            Motor Domain
 pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
            Motor Domain
          Length = 2486

 Score = 31.2 bits (69), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 10/51 (19%)

Query: 216  ECFPLSSSFLGKWSLYGEHCVRLWPMLLPF----------LSGFLGCYERV 256
            E FP   + + ++S+ G+H V+++ ML  F          +  FL C++RV
Sbjct: 2000 EFFPQFDNLVEEYSIIGKHSVKIFSMLEKFGQFHWFYGISIGQFLSCFKRV 2050


>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
 pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
 pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
 pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
 pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
 pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
 pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
 pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
          Length = 2695

 Score = 30.8 bits (68), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 10/51 (19%)

Query: 216  ECFPLSSSFLGKWSLYGEHCVRLWPMLLPF----------LSGFLGCYERV 256
            E FP   + + ++S+ G+H V+++ ML  F          +  FL C++RV
Sbjct: 2209 EFFPQFDNLVEEYSIIGKHSVKIFSMLEKFGQFHWFYGISIGQFLSCFKRV 2259


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,963,332
Number of Sequences: 62578
Number of extensions: 590892
Number of successful extensions: 1096
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1091
Number of HSP's gapped (non-prelim): 7
length of query: 830
length of database: 14,973,337
effective HSP length: 107
effective length of query: 723
effective length of database: 8,277,491
effective search space: 5984625993
effective search space used: 5984625993
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)