Query 046783
Match_columns 830
No_of_seqs 304 out of 1727
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 07:14:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046783.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046783hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h90_A Ferrous-iron efflux pum 100.0 4.1E-47 1.4E-51 406.9 16.4 274 415-830 3-281 (283)
2 3j1z_P YIIP, cation efflux fam 100.0 1.3E-46 4.5E-51 407.8 13.7 272 417-830 14-290 (306)
3 3j1z_P YIIP, cation efflux fam 99.4 3.9E-13 1.3E-17 145.5 6.1 200 270-514 12-211 (306)
4 3h90_A Ferrous-iron efflux pum 99.3 5.5E-13 1.9E-17 142.5 6.7 198 272-514 5-202 (283)
5 3byp_A CZRB protein; membrane 99.0 8E-10 2.7E-14 98.7 10.7 80 747-829 1-86 (94)
6 2zzt_A Putative uncharacterize 98.9 5.2E-09 1.8E-13 96.2 10.2 78 749-829 1-85 (107)
7 1zpv_A ACT domain protein; str 48.2 99 0.0034 25.8 9.2 64 759-826 18-81 (91)
8 3udc_A Small-conductance mecha 27.2 1.9E+02 0.0066 30.0 9.1 52 778-829 221-279 (285)
9 2k8i_A SLYD, peptidyl-prolyl C 27.1 28 0.00094 34.1 2.3 6 543-548 149-154 (171)
10 3ghp_A Cellulosomal scaffoldin 26.1 36 0.0012 34.4 2.9 17 15-31 169-185 (227)
11 2jp3_A FXYD domain-containing 24.0 86 0.003 26.2 4.3 33 472-505 6-38 (67)
12 3mhp_C TIC62_peptide, ferredox 23.1 55 0.0019 22.3 2.4 19 27-46 7-25 (26)
13 2yy3_A Elongation factor 1-bet 22.9 3.3E+02 0.011 23.9 8.2 72 750-825 11-86 (91)
14 3i4p_A Transcriptional regulat 22.4 3.1E+02 0.011 25.7 8.8 60 758-826 77-136 (162)
15 2cvi_A 75AA long hypothetical 21.5 1.5E+02 0.005 24.6 5.6 58 759-826 14-73 (83)
16 2jsx_A Protein NAPD; TAT, proo 20.9 1.4E+02 0.0048 26.3 5.4 63 748-824 11-74 (95)
17 3ghp_A Cellulosomal scaffoldin 20.8 38 0.0013 34.3 1.9 19 13-31 175-193 (227)
18 3cq1_A Putative uncharacterize 20.3 1.4E+02 0.0047 26.2 5.4 25 803-827 57-82 (103)
No 1
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=100.00 E-value=4.1e-47 Score=406.91 Aligned_cols=274 Identities=19% Similarity=0.274 Sum_probs=250.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHH
Q 046783 415 SRKIALFLLINTGYMVVEFVAGFMSNSLGLISDACHMLFDCAALAIGLYASYISRLPANSQFNYGRGRFEVLSGYTNAVF 494 (830)
Q Consensus 415 ~r~l~~~L~iNl~l~ivel~~G~lsgSlaLiADAlHsl~D~~s~~l~L~al~~s~~p~d~~~~yG~~R~E~Laalv~ai~ 494 (830)
+|.+++++++|++++++|+++|+++||++|+|||+||++|++++++++++.++++||+|++|||||+|+|++++++++++
T Consensus 3 ~r~~~~~~~~n~~l~~~k~~~g~~t~S~allaDa~hsl~D~~~~~~~l~~~~~s~~~~d~~~pyG~~r~E~l~~l~~~~~ 82 (283)
T 3h90_A 3 SRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAALAQSMF 82 (283)
T ss_dssp CTHHHHHHHHHHTTHHHHHHSSCSSSSSCCCSTTTHHHHHHHHHHHHHHHHHHHTCCCCSSCSSCSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCccchhH-HHHHHHHHHHHHHHHHHHHhhccccccCCccccCCCCCCCCCCCCCCCCCCCC
Q 046783 495 LVLVGALIVLESFERILDPQEISTNS-LLTVSIGGLLVNVIGLIFFHEEHHHAHGGVCSHSHSHSHSHPHHHHQHSHDHE 573 (830)
Q Consensus 495 Ll~i~~~Il~EsI~rLi~p~~i~~~~-ll~Vsi~gLivNlv~~~~~~~~h~H~Hgg~~~h~h~h~~sh~~~h~~~~~~~~ 573 (830)
++++++++++|+++++++|++++.+. +++++++++++|.+.+++.++.
T Consensus 83 l~~~~~~i~~eai~~l~~~~~~~~~~~~l~v~~~s~~v~~~~~~~~~~~------------------------------- 131 (283)
T 3h90_A 83 ISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALICTIILVSFQRWV------------------------------- 131 (283)
T ss_dssp HHHHHHHHHHHHHHTSSSSCCCCCCCCCTHHHHHHHHHHHHHHHHHHHH-------------------------------
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH-------------------------------
Confidence 99999999999999999999887765 4889999999999988887641
Q ss_pred CCCCcccccccccccccccCCCCCCCCCCCCcccCCCCCccCCccccccccCCCCCCCCCCCCCCCcccccCCCCCCCCC
Q 046783 574 GHGKRQECISISHESNEKSCSSHDHHHCTGHTAHHHGRRDHCDSTLKHEHTHGYDDQGLGDQHSHRDHTHKHNNHYHHHP 653 (830)
Q Consensus 574 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~h~~~~~~~~h~ 653 (830)
T Consensus 132 -------------------------------------------------------------------------------- 131 (283)
T 3h90_A 132 -------------------------------------------------------------------------------- 131 (283)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccchhhhHHHHHHHH
Q 046783 654 ANHNFHAHEHDDHDHHHHADHHEPLKHDRRHIDHNMEGIFLHVLADTMGSVGVVISTLLIKYKGWLVADPACSIFISLLI 733 (830)
Q Consensus 654 ~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~nm~~vflHvlaD~lgSVgViIs~lli~~~gw~~~DPi~SiiIsilI 733 (830)
.++.+|.|++++++|.++|+++|++|+++.++ .++||+|+||+++++|+++|
T Consensus 132 ---------------------------~~~~~s~~l~a~~~h~~~D~~~s~~vli~~~~-~~~g~~~~D~i~~i~ia~~i 183 (283)
T 3h90_A 132 ---------------------------VRRTQSQAVRADMLHYQSDVMMNGAILLALGL-SWYGWHRADALFALGIGIYI 183 (283)
T ss_dssp ---------------------------HHHSCCHHHHHHHHHHHHHHCCCSCSCSSSCS-CSTTSCCSTHHHHHHHHHHH
T ss_pred ---------------------------HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCchHHHHHHHHHHHHHH
Confidence 01124679999999999999999999999877 56799999999999999999
Q ss_pred HHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHcccCcceeeEEEEEEEcCCeEEEEEEEEECCCCC---HHHHHHHH
Q 046783 734 VSSVIPLLRNSAEILLQRVSRAHELDLKETLNDVMKISGVHGIQNLHLWSFTSTDVVGTLNLHVSSEAD---MVSIKAQV 810 (830)
Q Consensus 734 l~sa~pLlk~s~~iLLq~~P~~~e~~l~~i~~~i~~i~GV~~V~dlhiW~l~~~~~V~svHV~V~~~~~---~~~I~~~V 810 (830)
++++++++|++.+.|||++|+ +++.+++++.++++|||.++||+|+|+.|+. +.+++||+++++.+ .++|.+++
T Consensus 184 ~~~~~~l~~~s~~~Ll~~~~~--~~~~~~i~~~i~~~~~V~~v~~l~~~~~G~~-~~v~~hv~v~~~~~~~~~~~i~~~i 260 (283)
T 3h90_A 184 LYSALRMGYEAVQSLLDRALP--DEERQEIIDIVTSWPGVSGAHDLRTRQSGPT-RFIQIHLEMEDSLPLVQAHMVADQV 260 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCCCC--HHHHHHHHHHHHHSSSCSEEEEEEEEEETTE-EEEEEEEECCTTCBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHHhcCCCcccceeeEEEEECCc-EEEEEEEEeCCCCCHHHHHHHHHHH
Confidence 999999999999999999998 6788999999999999999999999999865 55699999999874 56899999
Q ss_pred HHHHh-cCCCCeEEEEEEecC
Q 046783 811 SHMLS-DAGIKDLTLQVECVR 830 (830)
Q Consensus 811 ~~il~-~~gI~~vTIQiE~~~ 830 (830)
++.++ ++++.++|||+||++
T Consensus 261 ~~~l~~~~~~~~v~ih~ep~~ 281 (283)
T 3h90_A 261 EQAILRRFPGSDVIIHQDPCS 281 (283)
T ss_dssp HHHHHHHSTTCEEEEEEECSC
T ss_pred HHHHHHHCCCCeEEEEeccCC
Confidence 99997 578899999999974
No 2
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=100.00 E-value=1.3e-46 Score=407.80 Aligned_cols=272 Identities=18% Similarity=0.232 Sum_probs=246.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 046783 417 KIALFLLINTGYMVVEFVAGFMSNSLGLISDACHMLFDCAALAIGLYASYISRLPANSQFNYGRGRFEVLSGYTNAVFLV 496 (830)
Q Consensus 417 ~l~~~L~iNl~l~ivel~~G~lsgSlaLiADAlHsl~D~~s~~l~L~al~~s~~p~d~~~~yG~~R~E~Laalv~ai~Ll 496 (830)
..+.++++|++++++|+++|+++||+||+|||+||++|++++++++++.++++||+|++|||||+|+|++++++++++++
T Consensus 14 a~~~si~~n~~l~~~k~~ag~~sgS~ALlaDa~hsl~D~~s~~i~l~~~~~s~k~~d~~~pyG~~R~E~l~al~~~~~l~ 93 (306)
T 3j1z_P 14 ASRASVATALTLITIKLLAWLYSGSASMLASLTDSFADTLASIINFIAIRYAIVPADHDHRYGHGKAEPLAALAQSAFIM 93 (306)
T ss_dssp THHHHHHHHHHHTHHHHHTCTTSSSSCCCTHHHHTTHHHHHHHHHHHHHHHHTSCCCCTTSSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCchhhHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCccchhHH-HHHHHHHHHHHHHHHHHHhhccccccCCccccCCCCCCCCCCCCCCCCCCCCCC
Q 046783 497 LVGALIVLESFERILDPQEISTNSL-LTVSIGGLLVNVIGLIFFHEEHHHAHGGVCSHSHSHSHSHPHHHHQHSHDHEGH 575 (830)
Q Consensus 497 ~i~~~Il~EsI~rLi~p~~i~~~~l-l~Vsi~gLivNlv~~~~~~~~h~H~Hgg~~~h~h~h~~sh~~~h~~~~~~~~~~ 575 (830)
++++++++|+++|+++|++++...+ ++++++++++|+...++.++..
T Consensus 94 ~~~~~i~~eai~~l~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-------------------------------- 141 (306)
T 3j1z_P 94 GSAFLLLFYGGERLLNPSPVENATLGVVVSVVAIVLTLALVLLQKRAL-------------------------------- 141 (306)
T ss_dssp HHHHHHHHHHHHTTTTTCCGGGTTCCHHHHHHHHHHHHHHHHHHHHHH--------------------------------
T ss_pred HHHHHHHHHhhhheecCCCccccccchhhhhhHhhhhHHHHHHHHHhc--------------------------------
Confidence 9999999999999999998877654 7888889999988877765410
Q ss_pred CCcccccccccccccccCCCCCCCCCCCCcccCCCCCccCCccccccccCCCCCCCCCCCCCCCcccccCCCCCCCCCCC
Q 046783 576 GKRQECISISHESNEKSCSSHDHHHCTGHTAHHHGRRDHCDSTLKHEHTHGYDDQGLGDQHSHRDHTHKHNNHYHHHPAN 655 (830)
Q Consensus 576 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~h~~~~~~~~h~~~ 655 (830)
T Consensus 142 -------------------------------------------------------------------------------- 141 (306)
T 3j1z_P 142 -------------------------------------------------------------------------------- 141 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHH
Q 046783 656 HNFHAHEHDDHDHHHHADHHEPLKHDRRHIDHNMEGIFLHVLADTMGSVGVVISTLLIKYKGWLVADPACSIFISLLIVS 735 (830)
Q Consensus 656 ~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~nm~~vflHvlaD~lgSVgViIs~lli~~~gw~~~DPi~SiiIsilIl~ 735 (830)
++..|.+++++++|.++|+++|++|+++.++++ +||+|+||+++++|+++|++
T Consensus 142 --------------------------~~~~s~~l~a~~~h~~~D~l~s~~vli~~~~~~-~g~~~~Dpi~ai~Ia~~I~~ 194 (306)
T 3j1z_P 142 --------------------------AATNSTVVEADSLHYKSDLFLNAAVLLALVLSQ-YGWWWADGLFAVLIACYIGQ 194 (306)
T ss_dssp --------------------------TTSCCHHHHHHHHHHHHHTTCCTTCCCTTSSCC-SSSCCCHHHHHHHHHHHHHH
T ss_pred --------------------------cccCCHHHHHHHHhhcchhhhhhHHHHHHHHHH-hCcchhhhHHHHHHHHHHHH
Confidence 012367999999999999999999999877654 59999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcccccchhhHHHHHHHHHcccCcceeeEEEEEEEcCCeEEEEEEEEECCCCC---HHHHHHHHHH
Q 046783 736 SVIPLLRNSAEILLQRVSRAHELDLKETLNDVMKISGVHGIQNLHLWSFTSTDVVGTLNLHVSSEAD---MVSIKAQVSH 812 (830)
Q Consensus 736 sa~pLlk~s~~iLLq~~P~~~e~~l~~i~~~i~~i~GV~~V~dlhiW~l~~~~~V~svHV~V~~~~~---~~~I~~~V~~ 812 (830)
++++++|++.+.|||++|+ +++.+++++.+++.|||.+|||+|+|+.|++ +.+++||+++++.+ .++|.+++++
T Consensus 195 ~~~~l~~~s~~~Ll~~~~~--~~~~~~I~~~i~~~~~V~~vh~l~~~~~G~~-~~v~~hi~v~~~~sl~eah~i~~~ie~ 271 (306)
T 3j1z_P 195 QAFDLGYRSIQALLDRELD--EDTRQRIKLIAKEDPRVLGLHDLRTRQAGKT-VFIQFHLELDGNLSLNEAHSITDTTGL 271 (306)
T ss_dssp HHHHHHHHHHHHHTTCCCC--HHHHHHHHHHHHHSTTBCCCCCBCCEEETTE-EEEEECCEECTTSBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccc--hhHHHHHHHHHhcCCCcceeeeEEEEEECCc-EEEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 9999999999999999998 6788899999999999999999999999875 55599999999975 5689999999
Q ss_pred HHh-cCCCCeEEEEEEecC
Q 046783 813 MLS-DAGIKDLTLQVECVR 830 (830)
Q Consensus 813 il~-~~gI~~vTIQiE~~~ 830 (830)
.++ ++++.++|||+||++
T Consensus 272 ~l~~~~~~~~v~IhveP~~ 290 (306)
T 3j1z_P 272 RVKAAFEDAEVIIHQDPVQ 290 (306)
T ss_dssp HHHHHSTTCEEEECCEETT
T ss_pred HHHhhCCCCeEEEEeCCCC
Confidence 887 468999999999974
No 3
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=99.35 E-value=3.9e-13 Score=145.52 Aligned_cols=200 Identities=14% Similarity=0.039 Sum_probs=164.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccchhhhhHHHHHHHHHHhhhccccccccccccccchhhHHHHHHHH
Q 046783 270 QVRLISLFYTTVLLSVPALVSWIVFENYGDGDENSISFANLAWPLANTVVFGVLLSENYSDQKFVISADFQREFVVTLVC 349 (830)
Q Consensus 270 Rl~Al~~~~a~~~L~p~al~~~~~~~s~~~~~~~~~S~~~l~~~l~~ti~fgv~l~d~y~~~~l~~~~~~~~~~~~afl~ 349 (830)
|+-+..+++.+++++..+++.++.++|....+|+.+|++|....++ .++|+.+..+++|++ +|||+.|.|++.+++.
T Consensus 12 r~a~~~si~~n~~l~~~k~~ag~~sgS~ALlaDa~hsl~D~~s~~i--~l~~~~~s~k~~d~~-~pyG~~R~E~l~al~~ 88 (306)
T 3j1z_P 12 KLASRASVATALTLITIKLLAWLYSGSASMLASLTDSFADTLASII--NFIAIRYAIVPADHD-HRYGHGKAEPLAALAQ 88 (306)
T ss_dssp STTHHHHHHHHHHHTHHHHHTCTTSSSSCCCTHHHHTTHHHHHHHH--HHHHHHHHTSCCCCT-TSSCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--HHHHHHHhCCCCccc-CCCchhhHHHHHHHHH
Confidence 4467788999999999999999999999999999999999998888 888899999999999 9999999999999998
Q ss_pred HHHHHHhhcCchhhhhHHHHHhhheeeecccccccccccccCCCccchhhhhccchhhhhhhhhhhHHHHHHHHHHHHHH
Q 046783 350 TIVLELFYYPELSLWGLLLCVLLLYFAVRELDPVYSNYHELGFESSESFSSLIMKPIRHILSERKSRKIALFLLINTGYM 429 (830)
Q Consensus 350 alvL~~~~~~~~slsG~Li~all~~i~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~l~~~L~iNl~l~ 429 (830)
++++. ++..++..++.+++.++... ...... --....+++.|+.+.
T Consensus 89 ~~~l~---------------~~~~~i~~eai~~l~~p~~~---~~~~~~----------------~~v~~~~~~~~~~~~ 134 (306)
T 3j1z_P 89 SAFIM---------------GSAFLLLFYGGERLLNPSPV---ENATLG----------------VVVSVVAIVLTLALV 134 (306)
T ss_dssp HHHHH---------------HHHHHHHHHHHHTTTTTCCG---GGTTCC----------------HHHHHHHHHHHHHHH
T ss_pred HHHHH---------------HHHHHHHHHhhhheecCCCc---cccccc----------------hhhhhhHhhhhHHHH
Confidence 88876 33345555555555432210 000000 011335577888888
Q ss_pred HHHHHHHHhhchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046783 430 VVEFVAGFMSNSLGLISDACHMLFDCAALAIGLYASYISRLPANSQFNYGRGRFEVLSGYTNAVFLVLVGALIVLESFER 509 (830)
Q Consensus 430 ivel~~G~lsgSlaLiADAlHsl~D~~s~~l~L~al~~s~~p~d~~~~yG~~R~E~Laalv~ai~Ll~i~~~Il~EsI~r 509 (830)
.+....+--.+|..+.||+.|.+.|+++++.+++++..+. ||+..++++++++.+++++..++.+++|++..
T Consensus 135 ~~~~~~~~~~~s~~l~a~~~h~~~D~l~s~~vli~~~~~~--------~g~~~~Dpi~ai~Ia~~I~~~~~~l~~~s~~~ 206 (306)
T 3j1z_P 135 LLQKRALAATNSTVVEADSLHYKSDLFLNAAVLLALVLSQ--------YGWWWADGLFAVLIACYIGQQAFDLGYRSIQA 206 (306)
T ss_dssp HHHHHHHTTSCCHHHHHHHHHHHHHTTCCTTCCCTTSSCC--------SSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccCCHHHHHHHHhhcchhhhhhHHHHHHHHHH--------hCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888889999999999999999999999888876553 68889999999999999999999999999999
Q ss_pred hcCCC
Q 046783 510 ILDPQ 514 (830)
Q Consensus 510 Li~p~ 514 (830)
|++..
T Consensus 207 Ll~~~ 211 (306)
T 3j1z_P 207 LLDRE 211 (306)
T ss_dssp HTTCC
T ss_pred HhCcc
Confidence 99843
No 4
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=99.35 E-value=5.5e-13 Score=142.50 Aligned_cols=198 Identities=14% Similarity=0.076 Sum_probs=164.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccchhhhhHHHHHHHHHHhhhccccccccccccccchhhHHHHHHHHHH
Q 046783 272 RLISLFYTTVLLSVPALVSWIVFENYGDGDENSISFANLAWPLANTVVFGVLLSENYSDQKFVISADFQREFVVTLVCTI 351 (830)
Q Consensus 272 ~Al~~~~a~~~L~p~al~~~~~~~s~~~~~~~~~S~~~l~~~l~~ti~fgv~l~d~y~~~~l~~~~~~~~~~~~afl~al 351 (830)
.++.+++.+++++..+++.++.++|....+|+.+|+.|....++ .++++.+..+++|++ |||++.|.|.+.+++.++
T Consensus 5 ~~~~~~~~n~~l~~~k~~~g~~t~S~allaDa~hsl~D~~~~~~--~l~~~~~s~~~~d~~-~pyG~~r~E~l~~l~~~~ 81 (283)
T 3h90_A 5 AAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLT--NLLVVRYSLQPADDN-HSFGHGKAESLAALAQSM 81 (283)
T ss_dssp HHHHHHHHHHTTHHHHHHSSCSSSSSCCCSTTTHHHHHHHHHHH--HHHHHHHHTCCCCSS-CSSCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCCCCC-CCCcchHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999888 888889999999999 999999999999999998
Q ss_pred HHHHhhcCchhhhhHHHHHhhheeeecccccccccccccCCCccchhhhhccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 046783 352 VLELFYYPELSLWGLLLCVLLLYFAVRELDPVYSNYHELGFESSESFSSLIMKPIRHILSERKSRKIALFLLINTGYMVV 431 (830)
Q Consensus 352 vL~~~~~~~~slsG~Li~all~~i~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~l~~~L~iNl~l~iv 431 (830)
++. ++..++..++.+++.++.. . ....... -....++++|.+++..
T Consensus 82 ~l~---------------~~~~~i~~eai~~l~~~~~-~--~~~~~~l----------------~v~~~s~~v~~~~~~~ 127 (283)
T 3h90_A 82 FIS---------------GSALFLFLTGIQHLISPTP-M--TDPGVGV----------------IVTIVALICTIILVSF 127 (283)
T ss_dssp HHH---------------HHHHHHHHHHHHTSSSSCC-C--CCCCCCT----------------HHHHHHHHHHHHHHHH
T ss_pred HHH---------------HHHHHHHHHHHHHHcCCCC-C--CcchHHH----------------HHHHHHHHHHHHHHHH
Confidence 887 3344555566666544221 1 1110000 1145678899999998
Q ss_pred HHHHHHhhchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046783 432 EFVAGFMSNSLGLISDACHMLFDCAALAIGLYASYISRLPANSQFNYGRGRFEVLSGYTNAVFLVLVGALIVLESFERIL 511 (830)
Q Consensus 432 el~~G~lsgSlaLiADAlHsl~D~~s~~l~L~al~~s~~p~d~~~~yG~~R~E~Laalv~ai~Ll~i~~~Il~EsI~rLi 511 (830)
..-.|--.+|.++.||+.|.+.|+++++..+++...+ -+|+..++++++++.+++++..++.+++|++..|+
T Consensus 128 ~~~~~~~~~s~~l~a~~~h~~~D~~~s~~vli~~~~~--------~~g~~~~D~i~~i~ia~~i~~~~~~l~~~s~~~Ll 199 (283)
T 3h90_A 128 QRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLS--------WYGWHRADALFALGIGIYILYSALRMGYEAVQSLL 199 (283)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHCCCSCSCSSSCSC--------STTSCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888999999999999999999999999888776543 25888899999999999999999999999999999
Q ss_pred CCC
Q 046783 512 DPQ 514 (830)
Q Consensus 512 ~p~ 514 (830)
+..
T Consensus 200 ~~~ 202 (283)
T 3h90_A 200 DRA 202 (283)
T ss_dssp TCC
T ss_pred CCC
Confidence 843
No 5
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=99.05 E-value=8e-10 Score=98.70 Aligned_cols=80 Identities=10% Similarity=0.013 Sum_probs=65.6
Q ss_pred HHHhcccccchhhHHHHHHHHHcc--cCcceeeEEEEEEEcCCeEEEEEEEEECCCCC---HHHHHHHHHHHHh-cCCCC
Q 046783 747 ILLQRVSRAHELDLKETLNDVMKI--SGVHGIQNLHLWSFTSTDVVGTLNLHVSSEAD---MVSIKAQVSHMLS-DAGIK 820 (830)
Q Consensus 747 iLLq~~P~~~e~~l~~i~~~i~~i--~GV~~V~dlhiW~l~~~~~V~svHV~V~~~~~---~~~I~~~V~~il~-~~gI~ 820 (830)
.||+++|+ +.+++++.+.+.++ +||.+||++|+|+.|+. +.+++||.++++.+ .+++.+++++.++ ++++.
T Consensus 1 ~Lld~~~~--~~~~~~I~~~l~~~~~~gV~~vh~l~~~~~g~~-~~v~~hi~v~~~~~~~~~h~i~~~ie~~l~~~~~~~ 77 (94)
T 3byp_A 1 GLMDEGLP--PEEVERIRAFLQERIRGRALEVHDLKTRRAGPR-SFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGL 77 (94)
T ss_dssp -----CCC--HHHHHHHHHHHHHHHTTTCSEEEEEEEEEETTE-EEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHSTTE
T ss_pred CCcCCCCC--HHHHHHHHHHHHhcCCCCceeeeeEEEEEECCc-EEEEEEEEECCCCcHHHHHHHHHHHHHHHHHHCCCC
Confidence 38899888 67889999999999 99999999999999855 77899999998864 4689999999886 57777
Q ss_pred eEEEEEEec
Q 046783 821 DLTLQVECV 829 (830)
Q Consensus 821 ~vTIQiE~~ 829 (830)
++|||+|+.
T Consensus 78 ~vtIh~ep~ 86 (94)
T 3byp_A 78 QATIHVEPE 86 (94)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEeCCC
Confidence 999999984
No 6
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=98.90 E-value=5.2e-09 Score=96.23 Aligned_cols=78 Identities=12% Similarity=0.246 Sum_probs=64.2
Q ss_pred Hhcccccchh--hHHHHHHHHHcccCcceeeEEEEEEEcCCeEEEEEEEEECCCCC---HHHHHHHHHHHHh-cCC-CCe
Q 046783 749 LQRVSRAHEL--DLKETLNDVMKISGVHGIQNLHLWSFTSTDVVGTLNLHVSSEAD---MVSIKAQVSHMLS-DAG-IKD 821 (830)
Q Consensus 749 Lq~~P~~~e~--~l~~i~~~i~~i~GV~~V~dlhiW~l~~~~~V~svHV~V~~~~~---~~~I~~~V~~il~-~~g-I~~ 821 (830)
|+.+|+ +. +++++.+.+.++|||.+|+++|+|+.|+ .+.+++||.|+++++ .++|.++|++.++ +++ |.+
T Consensus 1 md~~~~--~~~~~~~~I~~~l~~~~gV~~vh~lr~r~~G~-~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~~i~~ 77 (107)
T 2zzt_A 1 MDGMKR--TELDMYDDIFAVLERFPNVHNPHRVRIRRVGT-KYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDDIED 77 (107)
T ss_dssp ---CCH--HHHHHHHHHHHHHTTCSSCEEEEEEEEECSCC--CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCTTCCE
T ss_pred CCCCCC--ccHHHHHHHHHHHHcCCCccccEEEEEEEECC-cEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCcE
Confidence 567776 56 8899999999999999999999999764 566799999998875 4579999999886 577 999
Q ss_pred EEEEEEec
Q 046783 822 LTLQVECV 829 (830)
Q Consensus 822 vTIQiE~~ 829 (830)
+|||+||.
T Consensus 78 vtIhvEp~ 85 (107)
T 2zzt_A 78 VTIHVEPL 85 (107)
T ss_dssp EEEEEEET
T ss_pred EEEEEecC
Confidence 99999985
No 7
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=48.23 E-value=99 Score=25.81 Aligned_cols=64 Identities=6% Similarity=0.144 Sum_probs=44.2
Q ss_pred hHHHHHHHHHcccCcceeeEEEEEEEcCCeEEEEEEEEECCCCCHHHHHHHHHHHHhcCCCCeEEEEE
Q 046783 759 DLKETLNDVMKISGVHGIQNLHLWSFTSTDVVGTLNLHVSSEADMVSIKAQVSHMLSDAGIKDLTLQV 826 (830)
Q Consensus 759 ~l~~i~~~i~~i~GV~~V~dlhiW~l~~~~~V~svHV~V~~~~~~~~I~~~V~~il~~~gI~~vTIQi 826 (830)
.+.++.+.+.+. |+ ++.++...... +...+.+.+.+++..+.+++.++++++-.++|+ ++.++.
T Consensus 18 ila~vt~~la~~-~~-NI~~i~~~~~~-~~~~~~i~v~~~~~~~l~~l~~~L~~~~~~~~~-~~~~~~ 81 (91)
T 1zpv_A 18 IVAGVSGKIAEL-GL-NIDDISQTVLD-EYFTMMAVVSSDEKQDFTYLRNEFEAFGQTLNV-KINIQS 81 (91)
T ss_dssp HHHHHHHHHHHT-TC-EEEEEEEEEET-TEEEEEEEEEESSCCCHHHHHHHHHHHHHHHTE-EEEEEE
T ss_pred HHHHHHHHHHHc-CC-CEEEEEeEEEc-CEEEEEEEEEeCCCCCHHHHHHHHHHHHHHcCC-EEEEee
Confidence 345555544443 65 78888877755 666778888887766788999999888877764 444443
No 8
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=27.24 E-value=1.9e+02 Score=30.01 Aligned_cols=52 Identities=13% Similarity=0.196 Sum_probs=35.0
Q ss_pred EEEEEEEcCCeEEEEEEEEECCCCC---HHHHHHHHHHHHhcCCCC----eEEEEEEec
Q 046783 778 NLHLWSFTSTDVVGTLNLHVSSEAD---MVSIKAQVSHMLSDAGIK----DLTLQVECV 829 (830)
Q Consensus 778 dlhiW~l~~~~~V~svHV~V~~~~~---~~~I~~~V~~il~~~gI~----~vTIQiE~~ 829 (830)
.+.+-.++++.+...+...+++... ..++.+++.+.|++.||+ +-+||++..
T Consensus 221 ~v~~~~~~~s~i~~~v~~~~~~~~~~~~~~~l~~~I~~~f~~~gI~ipfP~~~v~~~~~ 279 (285)
T 3udc_A 221 VLGITDMQDSKLVIMVYAKTQPMQKWAVERDIRYRVKKMFDQKNISFPYPQMDVNFKRV 279 (285)
T ss_dssp EEEEEEEETTEEEEEEEEEESTTCHHHHHHHHHHHHHHHHHHTTCCCCCCCCEEEEEEC
T ss_pred cccccccCCCEEEEEEEEEECcchHHHHHHHHHHHHHHHHHHCCCcCcCCCEEEEeCcC
Confidence 3566678888777677777665432 246778888889888874 456666543
No 9
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=27.12 E-value=28 Score=34.08 Aligned_cols=6 Identities=67% Similarity=1.293 Sum_probs=3.2
Q ss_pred cccccC
Q 046783 543 HHHAHG 548 (830)
Q Consensus 543 h~H~Hg 548 (830)
|+|.||
T Consensus 149 ~gh~hg 154 (171)
T 2k8i_A 149 HGHVHG 154 (171)
T ss_dssp HTSCSS
T ss_pred cCCCCC
Confidence 455555
No 10
>3ghp_A Cellulosomal scaffoldin adaptor protein B; linker segments, beta barrel, alpha helix, beta flaps, structural protein; 2.49A {Acetivibrio cellulolyticus}
Probab=26.13 E-value=36 Score=34.42 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=6.8
Q ss_pred CCCcccccccccCCCCC
Q 046783 15 PPRAANTNTIINTPSTR 31 (830)
Q Consensus 15 ~~~~~~~~~~~~~~~~~ 31 (830)
|.+...++....||.+.
T Consensus 169 P~~I~~~~~~t~TPT~t 185 (227)
T 3ghp_A 169 PGEINSAPIATATPTTK 185 (227)
T ss_dssp CCCBSCCCCCCCCCCCC
T ss_pred ccccccccCCCCCCCCC
Confidence 33443333333344444
No 11
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=24.01 E-value=86 Score=26.16 Aligned_cols=33 Identities=24% Similarity=0.422 Sum_probs=23.5
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046783 472 ANSQFNYGRGRFEVLSGYTNAVFLVLVGALIVLE 505 (830)
Q Consensus 472 ~d~~~~yG~~R~E~Laalv~ai~Ll~i~~~Il~E 505 (830)
.+..|.|-|..+. +++++.+.+|+++++.|+..
T Consensus 6 e~dpF~YDY~tLR-igGLifA~vLfi~GI~iilS 38 (67)
T 2jp3_A 6 KGSPFYYDWESLQ-LGGLIFGGLLCIAGIALALS 38 (67)
T ss_dssp TTSGGGGGGHHHH-HHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCcccchHHhe-ecchhhHHHHHHHHHHHHHc
Confidence 4566777787776 57777788788788776543
No 12
>3mhp_C TIC62_peptide, ferredoxin--NADP reductase, LEAF isozyme, chlorop; FNR, oxidoreductase, thylakoid membrane, proton-FLUX, poly P helix; HET: FAD; 1.70A {Pisum sativum}
Probab=23.05 E-value=55 Score=22.28 Aligned_cols=19 Identities=37% Similarity=0.910 Sum_probs=13.4
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 046783 27 TPSTRYPSFSYPPVTPTPAT 46 (830)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~ 46 (830)
+|-+.||-+. ||+.|+|++
T Consensus 7 Spy~~Y~dlK-PPsSPsPs~ 25 (26)
T 3mhp_C 7 SPYTAYDDLK-PPSSPSPTK 25 (26)
T ss_dssp STTTTBTTSS-CSSCSSCCC
T ss_pred CccccccccC-CCCCCCCCC
Confidence 4666777777 777777754
No 13
>2yy3_A Elongation factor 1-beta; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 2.50A {Pyrococcus horikoshii}
Probab=22.91 E-value=3.3e+02 Score=23.92 Aligned_cols=72 Identities=8% Similarity=0.156 Sum_probs=50.2
Q ss_pred hcccccchhhHHHHHHHHHcc--cCcceeeEEEEEEEcCCeEEEEEEEEECCC-C-CHHHHHHHHHHHHhcCCCCeEEEE
Q 046783 750 QRVSRAHELDLKETLNDVMKI--SGVHGIQNLHLWSFTSTDVVGTLNLHVSSE-A-DMVSIKAQVSHMLSDAGIKDLTLQ 825 (830)
Q Consensus 750 q~~P~~~e~~l~~i~~~i~~i--~GV~~V~dlhiW~l~~~~~V~svHV~V~~~-~-~~~~I~~~V~~il~~~gI~~vTIQ 825 (830)
+--|.+.|.|++++.+.+.++ +|. .......-.++-+-....+.+.+.++ . ..+++.++++++ + +|+++.|.
T Consensus 11 ~V~P~d~etDl~~L~~~vk~~~~~gl-~w~~~k~~pIafGlk~L~i~~vveD~~~~~tD~lee~i~~~--e-~VqSvdV~ 86 (91)
T 2yy3_A 11 RVMPTDPDVNLDELEEKLKKVIPEKY-GLAKVEREPIAFGLVALKFYVLGRDEEGYSFDEVAEKFEEV--E-NVESAEVE 86 (91)
T ss_dssp EEEESSTTSCHHHHHHHHHHHSCTTC-EEEEEEEEECTTSCEEEEEEEEECSSTTCCHHHHHHHHHHS--T-TEEEEEEE
T ss_pred EECCCCCCCCHHHHHHHHHHhccCCc-EEeeeeEEEEEcceeeEEEEEEEECCCccccHHHHHHHhcC--C-CceEEEEE
Confidence 445766678888888888765 554 67778888888887777788888764 3 566666665443 2 67776654
No 14
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=22.41 E-value=3.1e+02 Score=25.67 Aligned_cols=60 Identities=20% Similarity=0.185 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHcccCcceeeEEEEEEEcCCeEEEEEEEEECCCCCHHHHHHHHHHHHhcCCCCeEEEEE
Q 046783 758 LDLKETLNDVMKISGVHGIQNLHLWSFTSTDVVGTLNLHVSSEADMVSIKAQVSHMLSDAGIKDLTLQV 826 (830)
Q Consensus 758 ~~l~~i~~~i~~i~GV~~V~dlhiW~l~~~~~V~svHV~V~~~~~~~~I~~~V~~il~~~gI~~vTIQi 826 (830)
..++++.+.+.+.|+|..++. ..|+.+++ +++.+ .+.+++.+-+.+++.+.+|.++...+
T Consensus 77 ~~~~~~~~~l~~~peV~~~~~----vtG~~D~~--l~v~~---~d~~~l~~~l~~~l~~~~V~~~~T~i 136 (162)
T 3i4p_A 77 EWLKRFSEVVSEFPEVVEFYR----MSGDVDYL--LRVVV---PDIAAYDAFYKRMIAKIEIRDVSSAF 136 (162)
T ss_dssp HHHHHHHHHHHHCTTEEEEEE----CCSSCSEE--EEEEE---SSHHHHHHHHHHHHHHCCCSEEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEeee----cCCCCCEE--EEEEE---CCHHHHHHHHHHHhhcCCeeEEEEEE
Confidence 568889999999999965553 12445565 45555 34556666666777665576665443
No 15
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=21.51 E-value=1.5e+02 Score=24.61 Aligned_cols=58 Identities=7% Similarity=0.216 Sum_probs=36.5
Q ss_pred hHHHHHHHHHcccCcceeeEEEEEEE-cCCeEEEEEEEEECCCCCHHHHHHHHHHHHhcC-CCCeEEEEE
Q 046783 759 DLKETLNDVMKISGVHGIQNLHLWSF-TSTDVVGTLNLHVSSEADMVSIKAQVSHMLSDA-GIKDLTLQV 826 (830)
Q Consensus 759 ~l~~i~~~i~~i~GV~~V~dlhiW~l-~~~~~V~svHV~V~~~~~~~~I~~~V~~il~~~-gI~~vTIQi 826 (830)
..+++.+.+.++|+|.+++ .+ |+.+++ +++.+. +.+++.+-+.+.+.+. ||.++.-.+
T Consensus 14 ~~~~~~~~l~~~peV~e~~-----~vtG~~D~l--l~v~~~---d~~~l~~~i~~~l~~~~gV~~~~T~i 73 (83)
T 2cvi_A 14 KEREVMEKLLAMPEVKEAY-----VVYGEYDLI--VKVETD---TLKDLDQFITEKIRKMPEIQMTSTMI 73 (83)
T ss_dssp CHHHHHHHHHTSTTEEEEE-----ECBSSCSEE--EEEEES---SHHHHHHHHHTTGGGCTTEEEEEEEE
T ss_pred CHHHHHHHHhCCCCeeEEE-----EEcccCCEE--EEEEEC---CHHHHHHHHHHHhccCCCEeEEEEEE
Confidence 3578888999999996654 33 444565 566654 4455555555566654 776655443
No 16
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=20.95 E-value=1.4e+02 Score=26.32 Aligned_cols=63 Identities=11% Similarity=0.248 Sum_probs=39.7
Q ss_pred HHhcccccchhhHHHHHHHHHcccCcceeeEEEEEEEcCCeEEEEEEEEECCCCCHHHHHHHHHHHHhcC-CCCeEEE
Q 046783 748 LLQRVSRAHELDLKETLNDVMKISGVHGIQNLHLWSFTSTDVVGTLNLHVSSEADMVSIKAQVSHMLSDA-GIKDLTL 824 (830)
Q Consensus 748 LLq~~P~~~e~~l~~i~~~i~~i~GV~~V~dlhiW~l~~~~~V~svHV~V~~~~~~~~I~~~V~~il~~~-gI~~vTI 824 (830)
|++..|. .++++.+.+.++||| +++ .-.-..+++|+++ + ..+.+++.+.+ +.+++. ||.+++.
T Consensus 11 vV~~~p~----~~~~V~~~L~~ipgv-Ei~---~~~~~~GkiVV~i--E---a~~~~~l~~~i-~~I~~i~GVlst~l 74 (95)
T 2jsx_A 11 VVQAKSE----RISDISTQLNAFPGC-EVA---VSDAPSGQLIVVV--E---AEDSETLIQTI-ESVRNVEGVLAVSL 74 (95)
T ss_dssp EEEECTT----SHHHHHHHHTTSTTE-EEE---EEETTTTEEEEEE--E---ESSHHHHHHHH-HHHTTSTTEEEEEE
T ss_pred EEEECCC----CHHHHHHHHHCCCCe-EEE---EecCCCCCEEEEE--E---eCCHHHHHHHH-HHHhcCCCccEEeE
Confidence 3455554 478889999999999 553 3321256777333 3 23566777777 566665 7766654
No 17
>3ghp_A Cellulosomal scaffoldin adaptor protein B; linker segments, beta barrel, alpha helix, beta flaps, structural protein; 2.49A {Acetivibrio cellulolyticus}
Probab=20.77 E-value=38 Score=34.25 Aligned_cols=19 Identities=21% Similarity=-0.004 Sum_probs=9.9
Q ss_pred cCCCCcccccccccCCCCC
Q 046783 13 SVPPRAANTNTIINTPSTR 31 (830)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~ 31 (830)
.++|-.++|.+...+|++-
T Consensus 175 ~~~~t~TPT~tp~~~~~~~ 193 (227)
T 3ghp_A 175 APIATATPTTKPTAFASTM 193 (227)
T ss_dssp CCCCCCCCCCCCCCCCCC-
T ss_pred ccCCCCCCCCCCCCCCCCC
Confidence 3456666655555555444
No 18
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=20.32 E-value=1.4e+02 Score=26.23 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhcC-CCCeEEEEEE
Q 046783 803 MVSIKAQVSHMLSDA-GIKDLTLQVE 827 (830)
Q Consensus 803 ~~~I~~~V~~il~~~-gI~~vTIQiE 827 (830)
.+.|++++++.+++. |+.++.|++.
T Consensus 57 ~~~l~~~i~~al~~l~gv~~V~V~l~ 82 (103)
T 3cq1_A 57 HDSLGEAVRQALSRLPGVEEVEVEVT 82 (103)
T ss_dssp SCHHHHHHHHHHHTSTTCCEEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCceeEEEEEe
Confidence 568999999999884 9999888764
Done!