BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046786
(604 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 105 bits (262), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 137/267 (51%), Gaps = 23/267 (8%)
Query: 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQF-- 105
E ++ K ++ + GE + +GPSGCGK+TLL R+ G +T+T G + K+
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLL-----RMIAGLETITSGDLFIGEKRMND 69
Query: 106 SAEVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARC 165
+ +R G V Q+ YPHL+VAE + F L+L + K+E V L LA
Sbjct: 70 TPPAERGVGMVFQSYALYPHLSVAENMSFG--LKLAGA-KKEVINQRVNQVAEVLQLAHL 126
Query: 166 RNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAE 225
+ R + LSGG+R+R++IG+ L+ PS+ LDEP S LD+ + ++ + +S+L +
Sbjct: 127 LD-----RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 181
Query: 226 G-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVINYFAG---IGYVPSVAM 281
GRT++ H ++ + +KI++L + G GK ++ +Y A G++ S M
Sbjct: 182 RLGRTMIYVTHDQVEAM-TLADKIVVLDA-GRVAQVGKPLELYHYPADRFVAGFIGSPKM 239
Query: 282 N--PADFLLDLANGVASGDPKENREAV 306
N P + V P NR+ V
Sbjct: 240 NFLPVKVTATAIDQVQVELPMPNRQQV 266
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 105 bits (262), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 137/267 (51%), Gaps = 23/267 (8%)
Query: 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQF-- 105
E ++ K ++ + GE + +GPSGCGK+TLL R+ G +T+T G + K+
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLL-----RMIAGLETITSGDLFIGEKRMND 69
Query: 106 SAEVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARC 165
+ +R G V Q+ YPHL+VAE + F L+L + K+E V L LA
Sbjct: 70 TPPAERGVGMVFQSYALYPHLSVAENMSFG--LKLAGA-KKEVINQRVNQVAEVLQLAHL 126
Query: 166 RNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAE 225
+ R + LSGG+R+R++IG+ L+ PS+ LDEP S LD+ + ++ + +S+L +
Sbjct: 127 LD-----RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 181
Query: 226 G-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVINYFAG---IGYVPSVAM 281
GRT++ H ++ + +KI++L + G GK ++ +Y A G++ S M
Sbjct: 182 RLGRTMIYVTHDQVEAM-TLADKIVVLDA-GRVAQVGKPLELYHYPADRFVAGFIGSPKM 239
Query: 282 N--PADFLLDLANGVASGDPKENREAV 306
N P + V P NR+ V
Sbjct: 240 NFLPVKVTATAIDQVQVELPMPNRQQV 266
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 137/267 (51%), Gaps = 23/267 (8%)
Query: 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQF-- 105
E ++ K ++ + GE + +GPSGCGK+TLL R+ G +T+T G + K+
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLL-----RMIAGLETITSGDLFIGEKRMND 69
Query: 106 SAEVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARC 165
+ +R G V Q+ YPHL+VAE + F L+L + K+E V L LA
Sbjct: 70 TPPAERGVGMVFQSYALYPHLSVAENMSFG--LKLAGA-KKEVINQRVNQVAEVLQLAHL 126
Query: 166 RNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAE 225
+ R + LSGG+R+R++IG+ L+ PS+ LD+P S LD+ + ++ + +S+L +
Sbjct: 127 LD-----RKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHK 181
Query: 226 G-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVINYFAG---IGYVPSVAM 281
GRT++ H ++ + +KI++L + G GK ++ +Y A G++ S M
Sbjct: 182 RLGRTMIYVTHDQVEAM-TLADKIVVLDA-GRVAQVGKPLELYHYPADRFVAGFIGSPKM 239
Query: 282 N--PADFLLDLANGVASGDPKENREAV 306
N P + V P NR+ V
Sbjct: 240 NFLPVKVTATAIDQVQVELPMPNRQQV 266
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 116/212 (54%), Gaps = 21/212 (9%)
Query: 31 DMLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALG--GRLSN 88
++L+ N+ +I+ + ILKG+S +V GE ++I+G SG GK+TLL LG +
Sbjct: 3 EILRAENIKKVIRGYE----ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTE 58
Query: 89 GKDTVTQGHITY-NGKQFSAEVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKRE 147
GK + + Y N K+ S R+ GFV Q + P LT E V +L++ K+E
Sbjct: 59 GKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALEN-VIVPMLKMGKP-KKE 116
Query: 148 EKVLHAEAVINQLGLARCRNSIIGGRLVRG---LSGGERKRISIGQELLINPSLLFLDEP 204
K E ++++LGL G +L R LSGGE++R++I + L P LLF DEP
Sbjct: 117 AKE-RGEYLLSELGL--------GDKLSRKPYELSGGEQQRVAIARALANEPILLFADEP 167
Query: 205 TSGLDSTMAKKILVSLSKLAEGGRTILMTIHQ 236
T LDS K+++ K+ EGG +I+M H+
Sbjct: 168 TGNLDSANTKRVMDIFLKINEGGTSIVMVTHE 199
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 106/218 (48%), Gaps = 18/218 (8%)
Query: 52 LKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS--AEV 109
L ++ + GE +A+LGPSG GK+TLL + G T G I ++ K +
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKP-----TSGKIYFDEKDVTELPPK 73
Query: 110 KRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSI 169
R G V QN YPH+TV + + F LR REE V L + + N
Sbjct: 74 DRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLN-- 128
Query: 170 IGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKL-AEGGR 228
R LSGG+++R++I + L+ P +L LDEP S LD+ + ++ L +L E G
Sbjct: 129 ---RYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGI 185
Query: 229 TILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266
T + H A +L M ++I ++ +G L G ++V
Sbjct: 186 TTVYVTHDQAEAL-AMADRIAVI-REGEILQVGTPDEV 221
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 128/281 (45%), Gaps = 32/281 (11%)
Query: 52 LKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS--AEV 109
+ GVS V GE +A+LGPSGCGKTT L L G T G I ++ +
Sbjct: 19 VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKP-----TSGEIYFDDVLVNDIPPK 73
Query: 110 KRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSI 169
R G V QN YPH+TV E + F R + + E++V+ R +
Sbjct: 74 YREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEI-----------ARKLL 122
Query: 170 IGGRLVRG---LSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKL-AE 225
I L R LSGG+++R+++ + L+ P +L DEP S LD+ + + + L E
Sbjct: 123 IDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQE 182
Query: 226 GGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVINYFAGIGYVPSVAMNPAD 285
G T + H A ++ M ++I + + G + +G ++V + + + P +
Sbjct: 183 LGITSVYVTHDQAEAM-TMASRIAVFNQ-GKLVQYGTPDEVYDSPKNMFVASFIGNPPTN 240
Query: 286 FLLDLANGVASGDPKENREAV--KQTLISAYKSNISNKLKQ 324
FL D + V EN++ + + +I + KLK+
Sbjct: 241 FLRDFSVSV------ENKQTILKRDDVIIKLPEPVDVKLKE 275
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 120/250 (48%), Gaps = 29/250 (11%)
Query: 52 LKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVK- 110
++ +S V GE + +LGPSGCGKTT L R+ G + ++G I Y G + A+ +
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTL-----RMIAGLEEPSRGQI-YIGDKLVADPEK 72
Query: 111 --------RRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGL 162
R V Q+ YPH+TV + + F LR + R+E V LGL
Sbjct: 73 GIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGL 129
Query: 163 ARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSK 222
N R R LSGG+R+R+++G+ ++ P + +DEP S LD+ + ++ L K
Sbjct: 130 TELLN-----RKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKK 184
Query: 223 LAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVINYFAGI---GYVPS 278
L G T + H ++ M ++I +++ G G ++V + A G++ S
Sbjct: 185 LQRQLGVTTIYVTHDQVEAM-TMGDRIAVMNR-GVLQQVGSPDEVYDKPANTFVAGFIGS 242
Query: 279 VAMNPADFLL 288
MN D ++
Sbjct: 243 PPMNFLDAIV 252
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 108/224 (48%), Gaps = 25/224 (11%)
Query: 52 LKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITY-------NGKQ 104
L V+ + GE ILGPSG GKTT + R+ G D + G + + NGK
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFM-----RIIAGLDVPSTGELYFDDRLVASNGKL 75
Query: 105 FSAEVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPN-SLKREEKVLHAEAVINQLGLA 163
R+ G V Q YP+LT E + F L N + +EE E V L +
Sbjct: 76 IVPPEDRKIGMVFQTWALYPNLTAFENIAFP----LTNMKMSKEEIRKRVEEVAKILDIH 131
Query: 164 RCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKL 223
N R LSGG+++R+++ + L+ +PSLL LDEP S LD+ M + ++
Sbjct: 132 HVLN-----HFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEV 186
Query: 224 -AEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266
+ G T+L+ H PA +F + +++ +L G + GK ED+
Sbjct: 187 QSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKLVQVGKPEDL 228
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 99/194 (51%), Gaps = 22/194 (11%)
Query: 51 ILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAE-- 108
+LKG++ + GE++ ++GPSG GK+T L L N + +G I +G A+
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCL-----NLLEDFDEGEIIIDGINLKAKDT 72
Query: 109 ----VKRRTGFVAQNNVFYPHLTVAE--TLVFTALLRLPNSLKREEKVLHAEAVINQLGL 162
V+ G V Q +PH+TV TL + + P RE+ A +++++GL
Sbjct: 73 NLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWP----REKAEAKAMELLDKVGL 128
Query: 163 ARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSK 222
++ LSGG+ +R++I + L + P ++ DEPTS LD M ++L + +
Sbjct: 129 KDKAHA-----YPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ 183
Query: 223 LAEGGRTILMTIHQ 236
LA G T+++ H+
Sbjct: 184 LANEGMTMVVVTHE 197
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 99/194 (51%), Gaps = 22/194 (11%)
Query: 51 ILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAE-- 108
+LKG++ + GE++ ++GPSG GK+T L L N + +G I +G A+
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCL-----NLLEDFDEGEIIIDGINLKAKDT 93
Query: 109 ----VKRRTGFVAQNNVFYPHLTVAE--TLVFTALLRLPNSLKREEKVLHAEAVINQLGL 162
V+ G V Q +PH+TV TL + + P RE+ A +++++GL
Sbjct: 94 NLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWP----REKAEAKAMELLDKVGL 149
Query: 163 ARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSK 222
++ LSGG+ +R++I + L + P ++ DEPTS LD M ++L + +
Sbjct: 150 KDKAHA-----YPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ 204
Query: 223 LAEGGRTILMTIHQ 236
LA G T+++ H+
Sbjct: 205 LANEGMTMVVVTHE 218
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 90/338 (26%), Positives = 152/338 (44%), Gaps = 53/338 (15%)
Query: 52 LKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS--AEV 109
++GVS + GE++ +LGPSG GKTT+L RL G + T+G + GK+ +
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTIL-----RLIAGLERPTKGDVWIGGKRVTDLPPQ 85
Query: 110 KRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAE--AVINQLGLARCRN 167
KR G V QN + H+TV + + F RE++V E A + +L L R
Sbjct: 86 KRNVGLVFQNYALFQHMTVYDNVSFGL---------REKRVPKDEMDARVREL-LRFMRL 135
Query: 168 SIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLA-EG 226
R LSGG+++R+++ + L P +L DEP + +D+ + +++ + ++ E
Sbjct: 136 ESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEM 195
Query: 227 GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV--------INYFAGIGYVPS 278
G T + H +L + +++L+L +G+ FG E+V + F G V +
Sbjct: 196 GVTSVFVTHDQEEAL-EVADRVLVL-HEGNVEQFGTPEEVYEKPGTLFVASFIGESNVWT 253
Query: 279 VAMN-----------PADFLLDLANGVA--------SGDPKENREAVKQTLISAYKSNIS 319
A+ P D + + VA P REA Q + SA+K + S
Sbjct: 254 RAVQNGRIEVAGAALPVDPAVSEGSEVAVVVRPKDVELQPASEREAHAQVVRSAFKGSYS 313
Query: 320 NKLKQEFEDGGDHSLTTDSKNYKKTSKWSTTWWQHFSV 357
+ +DG + S + +WS W H +V
Sbjct: 314 ACWIRT-KDGEVWEVHVPSAD---RHRWSPGAWVHMNV 347
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 90/190 (47%), Gaps = 13/190 (6%)
Query: 52 LKGVSGAVSPGELLAILGPSGCGKTTLLTALGG--RLSNGKDTVTQGHITYNGKQ-FSAE 108
+K +S + GE L +LGPSGCGKTT L + G + G+ + + K F
Sbjct: 22 VKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPP 81
Query: 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNS 168
+R V Q+ YPH TV + + F LR + ++E V LGL N
Sbjct: 82 KERDVAXVFQSYALYPHXTVYDNIAFPLKLR---KVPKQEIDKRVREVAEXLGLTELLN- 137
Query: 169 IIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAE--G 226
R R LSGG+R+R+++G+ ++ P + DEP S LD+ + K L KL G
Sbjct: 138 ----RKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLG 193
Query: 227 GRTILMTIHQ 236
TI +T Q
Sbjct: 194 VTTIYVTHDQ 203
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 107/224 (47%), Gaps = 25/224 (11%)
Query: 52 LKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITY-------NGKQ 104
L V+ + GE ILGPSG GKTT + R+ G D + G + + NGK
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFM-----RIIAGLDVPSTGELYFDDRLVASNGKL 75
Query: 105 FSAEVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPN-SLKREEKVLHAEAVINQLGLA 163
R+ G V Q YP+LT E + F L N + +EE E V L +
Sbjct: 76 IVPPEDRKIGMVFQTWALYPNLTAFENIAFP----LTNMKMSKEEIRKRVEEVAKILDIH 131
Query: 164 RCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKL 223
N R LSG +++R+++ + L+ +PSLL LDEP S LD+ M + ++
Sbjct: 132 HVLN-----HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEV 186
Query: 224 -AEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266
+ G T+L+ H PA +F + +++ +L G + GK ED+
Sbjct: 187 QSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKLVQVGKPEDL 228
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 127/270 (47%), Gaps = 32/270 (11%)
Query: 51 ILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQ-FSAEV 109
+L +S ++ PGE+L I+G SGCGKTTLL L G + G I+ +GK FS
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLA-----GFEQPDSGEISLSGKTIFSKNT 73
Query: 110 -----KRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKR-EEKVLHAEAVINQLGLA 163
+RR G++ Q V +PHLTV + + L N R ++ EA++ G+
Sbjct: 74 NLPVRERRLGYLVQEGVLFPHLTVYRNIAYG----LGNGKGRTAQERQRIEAMLELTGI- 128
Query: 164 RCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSL-SK 222
S + GR LSGG+++R ++ + L +P L+ LDEP S LD + ++I + +
Sbjct: 129 ----SELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAA 184
Query: 223 LAEGGRTILMTIHQPASSLFY------MFNKILLLSSDGSSLYFGKGEDVINYFAGIGYV 276
L G++ + H +L Y M +L ++ LY + F G G V
Sbjct: 185 LRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPADLDAALFIGEGIV 244
Query: 277 PSVAMNPADFLLDLANG---VASGDPKENR 303
A+N AD D G V SG P R
Sbjct: 245 FPAALN-ADGTADCRLGRLPVQSGAPAGTR 273
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 100/217 (46%), Gaps = 28/217 (12%)
Query: 58 AVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS--AEVKRRTGF 115
+ GE L +LGPSGCGKTT L R+ G + T+G I + + + R
Sbjct: 34 TIKDGEFLVLLGPSGCGKTTTL-----RMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM 88
Query: 116 VAQNNVFYPHLTVAETLVFTALLR------LPNSLKREEKVLHAEAVINQLGLARCRNSI 169
V Q+ +PH+TV E + F ++ + ++ ++L E ++N
Sbjct: 89 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLN----------- 137
Query: 170 IGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRT 229
R LSGG+R+R+++ + +++ P +L +DEP S LD+ + + + KL + +
Sbjct: 138 ---RYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKV 194
Query: 230 ILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266
+ + M ++I +++ G L G +V
Sbjct: 195 TTIYVTHDQVEAMTMGDRIAVMNR-GQLLQIGSPTEV 230
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 100/217 (46%), Gaps = 28/217 (12%)
Query: 58 AVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS--AEVKRRTGF 115
+ GE L +LGPSGCGKTT L R+ G + T+G I + + + R
Sbjct: 33 TIKDGEFLVLLGPSGCGKTTTL-----RMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM 87
Query: 116 VAQNNVFYPHLTVAETLVFTALLR------LPNSLKREEKVLHAEAVINQLGLARCRNSI 169
V Q+ +PH+TV E + F ++ + ++ ++L E ++N
Sbjct: 88 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLN----------- 136
Query: 170 IGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRT 229
R LSGG+R+R+++ + +++ P +L +DEP S LD+ + + + KL + +
Sbjct: 137 ---RYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKV 193
Query: 230 ILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266
+ + M ++I +++ G L G +V
Sbjct: 194 TTIYVTHDQVEAMTMGDRIAVMNR-GQLLQIGSPTEV 229
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 102/213 (47%), Gaps = 18/213 (8%)
Query: 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKD 91
M+K N+ K +E LK V+ + GE ++I+GPSG GK+T+L +G D
Sbjct: 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCL-----D 55
Query: 92 TVTQGHI--------TYNGKQFSAEVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNS 143
T+G + + + + + + GFV Q P LT E + + + +
Sbjct: 56 KPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGA 115
Query: 144 LKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDE 203
+ EE+ A + L +A + LSGG+++R++I + L NP ++ D+
Sbjct: 116 MSGEERRKRA---LECLKMAELEERFANHK-PNQLSGGQQQRVAIARALANNPPIILADQ 171
Query: 204 PTSGLDSTMAKKILVSLSKL-AEGGRTILMTIH 235
PT LDS +KI+ L KL E G+T+++ H
Sbjct: 172 PTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 110/214 (51%), Gaps = 20/214 (9%)
Query: 34 KKVNMLVIIKN------SDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLS 87
KK+ VI KN E ILKG+S +V PG+ LA++GPSGCGK+T++ L
Sbjct: 1071 KKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALL----E 1126
Query: 88 NGKDTVTQGHITYNGKQFSA----EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNS 143
DT+ G I +G + + + V+Q + ++AE +++ L +
Sbjct: 1127 RFYDTLG-GEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLF-DCSIAENIIY-GLDPSSVT 1183
Query: 144 LKREEKVLHAEAVINQLG-LARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLD 202
+ + E+ + N + L + +G R + LSGG+++RI+I + L+ NP +L LD
Sbjct: 1184 MAQVEEAARLANIHNFIAELPEGFETRVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLD 1242
Query: 203 EPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQ 236
E TS LD+ K + +L + E GRT ++ H+
Sbjct: 1243 EATSALDTESEKVVQEALDRARE-GRTCIVIAHR 1275
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 101/194 (52%), Gaps = 22/194 (11%)
Query: 51 ILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNG---KQFSA 107
IL+G++ V+ G+ +A++G SGCGK+T+++ L V +G IT +G + +
Sbjct: 433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD-----VLKGKITIDGVDVRDINL 487
Query: 108 EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREE-----KVLHAEAVINQLGL 162
E R+ V + T+ E + + REE K+ +AE I L
Sbjct: 488 EFLRKNVAVVSQEPALFNCTIEENISLG-----KEGITREEMVAACKMANAEKFIKTL-- 540
Query: 163 ARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSK 222
N+++G R + LSGG+++RI+I + L+ NP +L LDE TS LD+ + +L K
Sbjct: 541 PNGYNTLVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDK 599
Query: 223 LAEGGRTILMTIHQ 236
A+ GRT ++ H+
Sbjct: 600 AAK-GRTTIIIAHR 612
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 100/220 (45%), Gaps = 25/220 (11%)
Query: 52 LKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS--AEV 109
L +S V GE ILGP+G GKT L + G G I +GK + +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGF-----HVPDSGRILLDGKDVTDLSPE 70
Query: 110 KRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSI 169
K FV QN +PH+ V + L F ++ +K ++VL R+
Sbjct: 71 KHDIAFVYQNYSLFPHMNVKKNLEFGMRMK---KIKDPKRVLDT-----------ARDLK 116
Query: 170 IGGRLVRG---LSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG 226
I L R LSGGE++R+++ + L+ NP +L LDEP S LD + LS L +
Sbjct: 117 IEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKK 176
Query: 227 GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266
+ ++ I + M ++I ++ DG + GK E++
Sbjct: 177 NKLTVLHITHDQTEARIMADRIAVV-MDGKLIQVGKPEEI 215
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 102/213 (47%), Gaps = 18/213 (8%)
Query: 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKD 91
M+K N+ K +E LK V+ + GE ++I+GPSG GK+T+L +G D
Sbjct: 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCL-----D 55
Query: 92 TVTQGHI--------TYNGKQFSAEVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNS 143
T+G + + + + + + GFV Q P LT E + + + +
Sbjct: 56 KPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGA 115
Query: 144 LKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDE 203
+ EE+ A + L +A + LSGG+++R++I + L NP ++ D+
Sbjct: 116 MSGEERRKRA---LECLKMAELEERFANHK-PNQLSGGQQQRVAIARALANNPPIILADQ 171
Query: 204 PTSGLDSTMAKKILVSLSKL-AEGGRTILMTIH 235
PT LDS +KI+ L KL E G+T+++ H
Sbjct: 172 PTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 96/197 (48%), Gaps = 13/197 (6%)
Query: 47 EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS 106
E+K IL+G+S V PGE+ AI+GP+G GK+TL L GR VT G + + GK
Sbjct: 12 EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDY---EVTGGTVEFKGKDLL 68
Query: 107 A-EVKRRTG---FVA-QNNVFYPHLTVAETLVFTALLRLPNSLKREE---KVLHAEAVIN 158
A + R G F+A Q V P V+ L S + +E + + +
Sbjct: 69 ALSPEDRAGEGIFMAFQYPVEIP--GVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEE 126
Query: 159 QLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILV 218
++ L + ++ + G SGGE+KR I Q ++ P L LDE SGLD K +
Sbjct: 127 KIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVAD 186
Query: 219 SLSKLAEGGRTILMTIH 235
++ L +G R+ ++ H
Sbjct: 187 GVNSLRDGKRSFIIVTH 203
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 96/197 (48%), Gaps = 13/197 (6%)
Query: 47 EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS 106
E+K IL+G+S V PGE+ AI+GP+G GK+TL L GR VT G + + GK
Sbjct: 31 EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDY---EVTGGTVEFKGKDLL 87
Query: 107 A-EVKRRTG---FVA-QNNVFYPHLTVAETLVFTALLRLPNSLKREE---KVLHAEAVIN 158
A + R G F+A Q V P V+ L S + +E + + +
Sbjct: 88 ALSPEDRAGEGIFMAFQYPVEIP--GVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEE 145
Query: 159 QLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILV 218
++ L + ++ + G SGGE+KR I Q ++ P L LDE SGLD K +
Sbjct: 146 KIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVAD 205
Query: 219 SLSKLAEGGRTILMTIH 235
++ L +G R+ ++ H
Sbjct: 206 GVNSLRDGKRSFIIVTH 222
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 123/232 (53%), Gaps = 23/232 (9%)
Query: 14 MDEENQSQRELQKQNVEDMLKKVNM-LVIIKNSDEEKMILKGVSGAVSPGELLAILGPSG 72
+DE+ + + Q +E ++++ V + +D E ILK ++ ++ GE +A +G SG
Sbjct: 318 IDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSG 377
Query: 73 CGKTTLLTALGGRLSNGKDTVTQGHITYNG---KQF-SAEVKRRTGFVAQNNVFYPHLTV 128
GK+TL+ L R + VT G I +G K F + ++ + G V Q+N+ + TV
Sbjct: 378 GGKSTLIN-LIPRFYD----VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TV 431
Query: 129 AETLVFTALLRLPNSLKREEKVLHAEAVINQ----LGLARCRNSIIGGRLVRGLSGGERK 184
E + LL P + +E+V+ A + N + L + ++ +G R V+ LSGG+++
Sbjct: 432 KENI----LLGRPTA--TDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVK-LSGGQKQ 484
Query: 185 RISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQ 236
R+SI + L NP +L LDE TS LD I +L L++ RT L+ H+
Sbjct: 485 RLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHR 535
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 113/228 (49%), Gaps = 19/228 (8%)
Query: 46 DEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNG--- 102
D++K +LK ++ + PG+ +A++GP+G GKTT++ L R + V +G I +G
Sbjct: 365 DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM-RFYD----VDRGQILVDGIDI 419
Query: 103 -KQFSAEVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLG 161
K + ++ G V Q+ + + TV E L + +K K+ H++ I L
Sbjct: 420 RKIKRSSLRSSIGIVLQDTILF-STTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLP 478
Query: 162 LARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLS 221
G LS G+R+ ++I + L NP +L LDE TS +D+ K I ++
Sbjct: 479 EGYETVLTDNGE---DLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMW 535
Query: 222 KLAEGGRTILMTIHQPASSLFYMFN-KILLLSSDGSSLYFGKGEDVIN 268
KL EG +I++ A L + N ++++ DG + GK +++I
Sbjct: 536 KLMEGKTSIII-----AHRLNTIKNADLIIVLRDGEIVEMGKHDELIQ 578
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 116/222 (52%), Gaps = 19/222 (8%)
Query: 52 LKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS----A 107
L+ VS V PG+ LA++GPSG GK+T+L RL ++ G I +G+ S A
Sbjct: 70 LQDVSFTVMPGQTLALVGPSGAGKSTIL-----RLLFRFYDISSGCIRIDGQDISQVTQA 124
Query: 108 EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQ-LGLARCR 166
++ G V Q+ V + + T+A+ + + R+ E A + + +
Sbjct: 125 SLRSHIGVVPQDTVLF-NDTIADNIRYG---RVTAGNDEVEAAAQAAGIHDAIMAFPEGY 180
Query: 167 NSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG 226
+ +G R ++ LSGGE++R++I + +L P ++ LDE TS LD++ + I SL+K+
Sbjct: 181 RTQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC-A 238
Query: 227 GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVIN 268
RT ++ H+ S ++IL++ DG + G+ E +++
Sbjct: 239 NRTTIVVAHR--LSTVVNADQILVI-KDGCIVERGRHEALLS 277
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 105/197 (53%), Gaps = 16/197 (8%)
Query: 45 SDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQ 104
S +E ILKG++ V G+ +A++G SGCGK+T + L RL + D G ++ +G+
Sbjct: 399 SRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQ-LMQRLYDPLD----GMVSIDGQD 453
Query: 105 FSA----EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEK-VLHAEAVINQ 159
++ G V+Q V + T+AE + + R ++ EK V A A
Sbjct: 454 IRTINVRYLREIIGVVSQEPVLFA-TTIAENIRYG---REDVTMDEIEKAVKEANAYDFI 509
Query: 160 LGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVS 219
+ L ++++G R + LSGG+++RI+I + L+ NP +L LDE TS LD+ + +
Sbjct: 510 MKLPHQFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAA 568
Query: 220 LSKLAEGGRTILMTIHQ 236
L K E GRT ++ H+
Sbjct: 569 LDKARE-GRTTIVIAHR 584
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 105/198 (53%), Gaps = 28/198 (14%)
Query: 51 ILKGVSGAVSPGELLAILGPSGCGKTTLLTAL--------GGRLSNGKDTVTQGHITYNG 102
+L+G+S V G+ LA++G SGCGK+T++ L G +GK+
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEI---------- 1097
Query: 103 KQFSAE-VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHA-EAVINQL 160
KQ + + ++ + G V+Q + + ++AE + + R+ + EE V A EA I+Q
Sbjct: 1098 KQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNSRV---VSYEEIVRAAKEANIHQF 1153
Query: 161 --GLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILV 218
L N+ +G + + LSGG+++RI+I + L+ P +L LDE TS LD+ K +
Sbjct: 1154 IDSLPDKYNTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQE 1212
Query: 219 SLSKLAEGGRTILMTIHQ 236
+L K E GRT ++ H+
Sbjct: 1213 ALDKARE-GRTCIVIAHR 1229
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 105/197 (53%), Gaps = 16/197 (8%)
Query: 45 SDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQ 104
S +E ILKG++ V G+ +A++G SGCGK+T + L RL + D G ++ +G+
Sbjct: 399 SRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQ-LMQRLYDPLD----GMVSIDGQD 453
Query: 105 FSA----EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEK-VLHAEAVINQ 159
++ G V+Q V + T+AE + + R ++ EK V A A
Sbjct: 454 IRTINVRYLREIIGVVSQEPVLFA-TTIAENIRYG---REDVTMDEIEKAVKEANAYDFI 509
Query: 160 LGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVS 219
+ L ++++G R + LSGG+++RI+I + L+ NP +L LDE TS LD+ + +
Sbjct: 510 MKLPHQFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAA 568
Query: 220 LSKLAEGGRTILMTIHQ 236
L K E GRT ++ H+
Sbjct: 569 LDKARE-GRTTIVIAHR 584
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 105/198 (53%), Gaps = 28/198 (14%)
Query: 51 ILKGVSGAVSPGELLAILGPSGCGKTTLLTAL--------GGRLSNGKDTVTQGHITYNG 102
+L+G+S V G+ LA++G SGCGK+T++ L G +GK+
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEI---------- 1097
Query: 103 KQFSAE-VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHA-EAVINQL 160
KQ + + ++ + G V+Q + + ++AE + + R+ + EE V A EA I+Q
Sbjct: 1098 KQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNSRV---VSYEEIVRAAKEANIHQF 1153
Query: 161 --GLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILV 218
L N+ +G + + LSGG+++RI+I + L+ P +L LDE TS LD+ K +
Sbjct: 1154 IDSLPDKYNTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQE 1212
Query: 219 SLSKLAEGGRTILMTIHQ 236
+L K E GRT ++ H+
Sbjct: 1213 ALDKARE-GRTCIVIAHR 1229
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 122/232 (52%), Gaps = 18/232 (7%)
Query: 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVT-QGHITYNGKQFS 106
E I + S ++ G + A++GPSG GK+T+L+ L T++ GH + +Q +
Sbjct: 387 EVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGH---DIRQLN 443
Query: 107 AE-VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLAR- 164
++ + G V+Q + + ++AE + + A P+S+ EE AE V N + R
Sbjct: 444 PVWLRSKIGTVSQEPILF-SCSIAENIAYGA--DDPSSVTAEEIQRVAE-VANAVAFIRN 499
Query: 165 ---CRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLS 221
N+++G + V LSGG+++RI+I + LL NP +L LDE TS LD+ + +L
Sbjct: 500 FPQGFNTVVGEKGVL-LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALD 558
Query: 222 KLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVINYFAGI 273
+L + GRT+L+ H S N + +L G +GK E++++ GI
Sbjct: 559 RLMD-GRTVLVIAHH--LSTIKNANMVAVL-DQGKITEYGKHEELLSKPNGI 606
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 123/232 (53%), Gaps = 18/232 (7%)
Query: 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVT-QGHITYNGKQFS 106
E I + S ++ G + A++GPSG GK+T+L+ L T++ GH + +Q +
Sbjct: 356 EVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGH---DIRQLN 412
Query: 107 AE-VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLAR- 164
++ + G V+Q + + ++AE + + A P+S+ EE AE V N + R
Sbjct: 413 PVWLRSKIGTVSQEPILF-SCSIAENIAYGA--DDPSSVTAEEIQRVAE-VANAVAFIRN 468
Query: 165 ---CRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLS 221
N+++G + V LSGG+++RI+I + LL NP +L LDE TS LD+ + +L
Sbjct: 469 FPQGFNTVVGEKGVL-LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALD 527
Query: 222 KLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVINYFAGI 273
+L + GRT+L+ H+ S N + +L G +GK E++++ GI
Sbjct: 528 RLMD-GRTVLVIAHR--LSTIKNANMVAVL-DQGKITEYGKHEELLSKPNGI 575
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 87/193 (45%), Gaps = 18/193 (9%)
Query: 52 LKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHI--------TYNGK 103
LK V+ + GE ++I GPSG GK+T L +G D T+G + +
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCL-----DKPTEGEVYIDNIKTNDLDDD 75
Query: 104 QFSAEVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLA 163
+ + + + GFV Q P LT E + + + + EE+ A + L
Sbjct: 76 ELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELE 135
Query: 164 RCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKL 223
LSGG+++R++I + L NP ++ DEPT LDS +KI L KL
Sbjct: 136 ----ERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKL 191
Query: 224 -AEGGRTILMTIH 235
E G+T+++ H
Sbjct: 192 NEEDGKTVVVVTH 204
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 99/208 (47%), Gaps = 39/208 (18%)
Query: 46 DEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQF 105
D+ + IL+ +S P ++A GPSG GK+T+ + L R T G IT +G+
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL-ERFYQ----PTAGEITIDGQPI 66
Query: 106 S----AEVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLG 161
+ + GFV+Q++ T+ E L + E E + L
Sbjct: 67 DNISLENWRSQIGFVSQDSAIMAG-TIRENLTYGL-----------EGDYTDEDLWQVLD 114
Query: 162 LARCR----------NSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDS- 210
LA R N+ +G R V+ +SGG+R+R++I + L NP +L LDE T+ LDS
Sbjct: 115 LAFARSFVENMPDQLNTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSE 173
Query: 211 --TMAKKILVSLSKLAEGGRTILMTIHQ 236
+M +K L SL K GRT L+ H+
Sbjct: 174 SESMVQKALDSLMK----GRTTLVIAHR 197
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 93/188 (49%), Gaps = 20/188 (10%)
Query: 52 LKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS---AE 108
+KG+ V G+++ ++G +G GKTT L+A+ G + K G I +NG+ + A
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQK-----GKIIFNGQDITNKPAH 76
Query: 109 VKRRTG--FVAQNNVFYPHLTVAETLVFTALLRL-PNSLKREEKVLHAEAVINQLGLARC 165
V R G V + +P LTV E L A R +KR+ E + + +
Sbjct: 77 VINRXGIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRD-----LEWIFSLFPRLKE 131
Query: 166 RNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAE 225
R +GG L SGGE++ ++IG+ L P LL DEP+ GL + ++ + K+ +
Sbjct: 132 RLKQLGGTL----SGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQ 187
Query: 226 GGRTILMT 233
G TIL+
Sbjct: 188 EGTTILLV 195
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 94/190 (49%), Gaps = 16/190 (8%)
Query: 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGK---QF 105
K ILKG+S + GE+ ++GP+G GKTT L R+ + + G +T GK +
Sbjct: 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTL-----RIISTLIKPSSGIVTVFGKNVVEE 82
Query: 106 SAEVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARC 165
EV++ ++ + Y ++ E L F A +S + EE V A + +
Sbjct: 83 PHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKD 142
Query: 166 RNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAE 225
R S +VR ++ I + L++NP L LDEPTSGLD A+++ L + ++
Sbjct: 143 RVSTYSKGMVR--------KLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ 194
Query: 226 GGRTILMTIH 235
G TIL++ H
Sbjct: 195 EGLTILVSSH 204
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 98/198 (49%), Gaps = 22/198 (11%)
Query: 47 EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS 106
+ +IL ++ ++ GE++ I+G SG GK+TL T L R G + +G +
Sbjct: 14 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTL-TKLIQRFY----IPENGQVLIDGHDLA 68
Query: 107 AE----VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLG- 161
++R+ G V Q+NV + + L N EKV++A +
Sbjct: 69 LADPNWLRRQVGVVLQDNVLLNRSIIDN-------ISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 162 ---LARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILV 218
L N+I+G + GLSGG+R+RI+I + L+ NP +L DE TS LD I+
Sbjct: 122 ISELREGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 219 SLSKLAEGGRTILMTIHQ 236
++ K+ + GRT+++ H+
Sbjct: 181 NMHKICK-GRTVIIIAHR 197
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 98/198 (49%), Gaps = 22/198 (11%)
Query: 47 EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS 106
+ +IL ++ ++ GE++ I+G SG GK+TL T L R G + +G +
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTL-TKLIQRFY----IPENGQVLIDGHDLA 74
Query: 107 AE----VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLG- 161
++R+ G V Q+NV + + L N EKV++A +
Sbjct: 75 LADPNWLRRQVGVVLQDNVLLNRSIIDN-------ISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 162 ---LARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILV 218
L N+I+G + GLSGG+R+RI+I + L+ NP +L DE TS LD I+
Sbjct: 128 ISELREGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 186
Query: 219 SLSKLAEGGRTILMTIHQ 236
++ K+ + GRT+++ H+
Sbjct: 187 NMHKICK-GRTVIIIAHR 203
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 98/198 (49%), Gaps = 22/198 (11%)
Query: 47 EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS 106
+ +IL ++ ++ GE++ I+G SG GK+TL T L R G + +G +
Sbjct: 16 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTL-TKLIQRFY----IPENGQVLIDGHDLA 70
Query: 107 AE----VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLG- 161
++R+ G V Q+NV + + L N EKV++A +
Sbjct: 71 LADPNWLRRQVGVVLQDNVLLNRSIIDN-------ISLANPGMSVEKVIYAAKLAGAHDF 123
Query: 162 ---LARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILV 218
L N+I+G + GLSGG+R+RI+I + L+ NP +L DE TS LD I+
Sbjct: 124 ISELREGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 182
Query: 219 SLSKLAEGGRTILMTIHQ 236
++ K+ + GRT+++ H+
Sbjct: 183 NMHKICK-GRTVIIIAHR 199
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 98/198 (49%), Gaps = 22/198 (11%)
Query: 47 EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS 106
+ +IL ++ ++ GE++ I+G +G GK+TL T L R G + +G +
Sbjct: 16 DSPVILDNINLSIKQGEVIGIVGRAGSGKSTL-TKLIQRFY----IPENGQVLIDGHDLA 70
Query: 107 AE----VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLG- 161
++R+ G V Q+NV + + L N EKV++A +
Sbjct: 71 LADPNWLRRQVGVVLQDNVLLNRSIIDN-------ISLANPGMSVEKVIYAAKLAGAHDF 123
Query: 162 ---LARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILV 218
L N+I+G + GLSGG+R+RI+I + L+ NP +L DE TS LD I+
Sbjct: 124 ISELREGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 182
Query: 219 SLSKLAEGGRTILMTIHQ 236
++ K+ + GRT+++ H+
Sbjct: 183 NMHKICK-GRTVIIIAHR 199
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 100/198 (50%), Gaps = 22/198 (11%)
Query: 47 EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS 106
+ +IL ++ ++ GE++ I+G SG GK+TL T L R ++ G + +G +
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTL-TKLIQRFYIPEN----GQVLIDGHDLA 74
Query: 107 AE----VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLG- 161
++R+ G V Q+NV + + L N EKV++A +
Sbjct: 75 LADPNWLRRQVGVVLQDNVLLNRSIIDN-------ISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 162 ---LARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILV 218
L N+I+G + GLSGG+R+RI+I + L+ NP +L D+ TS LD I+
Sbjct: 128 ISELREGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMR 186
Query: 219 SLSKLAEGGRTILMTIHQ 236
++ K+ + GRT+++ H+
Sbjct: 187 NMHKICK-GRTVIIIAHR 203
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 87/169 (51%), Gaps = 17/169 (10%)
Query: 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGK---QF 105
+ ILKGV+ V GE+ A++GP+G GK+TL L G + + TV +G I +G+ +
Sbjct: 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG---DPEYTVERGEILLDGENILEL 72
Query: 106 SAEVKRRTG-FVA-QNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAE---AVINQL 160
S + + R G F+A Q V P +T+A LRL K +V AE V L
Sbjct: 73 SPDERARKGLFLAFQYPVEVPGVTIAN------FLRLALQAKLGREVGVAEFWTKVKKAL 126
Query: 161 GLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLD 209
L S + L G SGGE+KR I Q L++ P+ LDE SGLD
Sbjct: 127 ELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLD 175
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 103/220 (46%), Gaps = 20/220 (9%)
Query: 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA 107
EK L+ VS ++ GE L + G +G GK+TLL + G + T G + Y+G++
Sbjct: 19 EKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP-----TSGDVLYDGERKKG 73
Query: 108 -EVKRRTGFVAQNNVFYPHLTVAETLVFTAL-LRLPNSLKREEKVLHAEAVINQLGLARC 165
E++R G Q YP VF + + N + V + + +GL
Sbjct: 74 YEIRRNIGIAFQ----YPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLD-- 127
Query: 166 RNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAE 225
R+ LSGGE++R++I ++ P +L LDEP GLD +L + K
Sbjct: 128 -FDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT 186
Query: 226 GGRTILMTIHQPASSLFYMFNKILLLSS-----DGSSLYF 260
G+T+++ H + + ++ +++++L DG+ + F
Sbjct: 187 LGKTVILISHDIETVINHV-DRVVVLEKGKKVFDGTRMEF 225
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 117/236 (49%), Gaps = 30/236 (12%)
Query: 43 KNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNG 102
+N+D +L GV+ +V PG L+A+LG +G GK+TL+ + + + V +
Sbjct: 353 ENTDP---VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVR- 408
Query: 103 KQFSAEVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGL 162
+ ++K G ++ P ET++F+ ++ RE+ + ++ +
Sbjct: 409 ---TVKLKDLRGHISA----VPQ----ETVLFSGTIKENLKWGREDAT--DDEIVEAAKI 455
Query: 163 ARCRNSIIG------GRLVRG---LSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMA 213
A+ + II R+ RG SGG+++R+SI + L+ P +L LD+ TS +D
Sbjct: 456 AQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITE 515
Query: 214 KKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVINY 269
K+IL L + +G T ++T P + L +KIL+L +G FG ++++ +
Sbjct: 516 KRILDGLKRYTKGCTTFIITQKIPTALL---ADKILVL-HEGKVAGFGTHKELLEH 567
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 103/220 (46%), Gaps = 20/220 (9%)
Query: 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA 107
EK L+ VS ++ GE L + G +G GK+TLL + G + T G + Y+G++
Sbjct: 21 EKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP-----TSGDVLYDGERKKG 75
Query: 108 -EVKRRTGFVAQNNVFYPHLTVAETLVFTAL-LRLPNSLKREEKVLHAEAVINQLGLARC 165
E++R G Q YP VF + + N + V + + +GL
Sbjct: 76 YEIRRNIGIAFQ----YPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLD-- 129
Query: 166 RNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAE 225
R+ LSGGE++R++I ++ P +L LDEP GLD +L + K
Sbjct: 130 -FDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT 188
Query: 226 GGRTILMTIHQPASSLFYMFNKILLLSS-----DGSSLYF 260
G+T+++ H + + ++ +++++L DG+ + F
Sbjct: 189 LGKTVILISHDIETVINHV-DRVVVLEKGKKVFDGTRMEF 227
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 110/232 (47%), Gaps = 29/232 (12%)
Query: 52 LKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS----A 107
L GVS +V+ G++ I+GP+G GK+TL+ + G L +G + + K + A
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK-----ADEGRVYFENKDITNKEPA 77
Query: 108 EVKRRTGFVAQNNVFYP--HLTVAETLVFTALL--RLP-NSL-------KREEKVLHAEA 155
E+ G V P +TV E L+ + P NSL K EE V A
Sbjct: 78 EL-YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFK 136
Query: 156 VINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKK 215
++ L L+ + R LSGG+ K + IG+ L+ NP ++ +DEP +G+ +A
Sbjct: 137 ILEFLKLSHLYD-----RKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHD 191
Query: 216 ILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267
I + +L G T L+ H+ L Y+ + L + +G + G+GE+ I
Sbjct: 192 IFNHVLELKAKGITFLIIEHRLDIVLNYIDH--LYVMFNGQIIAEGRGEEEI 241
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 98/194 (50%), Gaps = 22/194 (11%)
Query: 47 EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS 106
+ +IL ++ ++ GE++ I+G SG GK+TL T L R ++ G + +G +
Sbjct: 14 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTL-TKLIQRFYIPEN----GQVLIDGHDLA 68
Query: 107 AE----VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLG- 161
++R+ G V Q+NV + + L N EKV++A +
Sbjct: 69 LADPNWLRRQVGVVLQDNVLLNRSIIDN-------ISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 162 ---LARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILV 218
L N+I+G + GLSGG+R+RI+I + L+ NP +L DE TS LD I+
Sbjct: 122 ISELREGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 219 SLSKLAEGGRTILM 232
++ K+ + GRT+++
Sbjct: 181 NMHKICK-GRTVII 193
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 98/194 (50%), Gaps = 22/194 (11%)
Query: 47 EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS 106
+ +IL ++ ++ GE++ I+G SG GK+TL T L R ++ G + +G +
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTL-TKLIQRFYIPEN----GQVLIDGHDLA 74
Query: 107 AE----VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLG- 161
++R+ G V Q+NV + + L N EKV++A +
Sbjct: 75 LADPNWLRRQVGVVLQDNVLLNRSIIDN-------ISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 162 ---LARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILV 218
L N+I+G + GLSGG+R+RI+I + L+ NP +L DE TS LD I+
Sbjct: 128 ISELREGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 186
Query: 219 SLSKLAEGGRTILM 232
++ K+ + GRT+++
Sbjct: 187 NMHKICK-GRTVII 199
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 106/229 (46%), Gaps = 20/229 (8%)
Query: 47 EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS 106
+++ ++ VS ++ GE++AI+GP+G GK+TLL L G LS N Q
Sbjct: 22 QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPK 81
Query: 107 AEVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCR 166
A + R + + +P +V+E + R P ++ + L Q +A+
Sbjct: 82 ALARTRAVMRQYSELAFP-FSVSEVIQMG---RAPYGGSQDRQAL-------QQVMAQTD 130
Query: 167 NSIIGGRLVRGLSGGERKRISIGQELL------INPSLLFLDEPTSGLDSTMAKKILVSL 220
+ R R LSGGE++R+ + + L P LFLDEPTS LD + L L
Sbjct: 131 CLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLL 190
Query: 221 SKLA-EGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVIN 268
+L + + +H + Y ++I+LL + G + G E+V+N
Sbjct: 191 RQLTRQEPLAVCCVLHDLNLAALYA-DRIMLL-AQGKLVACGTPEEVLN 237
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 109/232 (46%), Gaps = 29/232 (12%)
Query: 52 LKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS----A 107
L GVS +V G++ I+GP+G GK+TL+ + G L +G + + K + A
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLK-----ADEGRVYFENKDITNKEPA 77
Query: 108 EVKRRTGFVAQNNVFYP--HLTVAETLVFTALL--RLP-NSL-------KREEKVLHAEA 155
E+ G V P +TV E L+ + P NSL K EE V A
Sbjct: 78 EL-YHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFK 136
Query: 156 VINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKK 215
++ L L+ + R LSGG+ K + IG+ L+ NP ++ +DEP +G+ +A
Sbjct: 137 ILEFLKLSHLYD-----RKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHD 191
Query: 216 ILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267
I + +L G T L+ H+ L Y+ + L + +G + G+GE+ I
Sbjct: 192 IFNHVLELKAKGITFLIIEHRLDIVLNYIDH--LYVMFNGQIIAEGRGEEEI 241
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 99/194 (51%), Gaps = 23/194 (11%)
Query: 52 LKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRL--SNGKDTVTQGHITYNGKQFSAEV 109
LKG++ + GE+ AILG +G GK+TL G L S+G+ I Y+ K ++
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGI-MKL 82
Query: 110 KRRTGFVAQ---NNVFYPHLTVAETLVFTAL-LRLPNSLKREEKVLHAEAVINQLGLARC 165
+ G V Q N +F +V + + F A+ ++LP R+ + + + G+
Sbjct: 83 RESIGIVFQDPDNQLF--SASVYQDVSFGAVNMKLPEDEIRK----RVDNALKRTGIEHL 136
Query: 166 RNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDS---TMAKKILVSLSK 222
++ + LS G++KR++I L++ P +L LDEPT+GLD + K+LV + K
Sbjct: 137 KD-----KPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQK 191
Query: 223 LAEGGRTILMTIHQ 236
E G TI++ H
Sbjct: 192 --ELGITIIIATHD 203
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 110/232 (47%), Gaps = 29/232 (12%)
Query: 52 LKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS----A 107
L GVS +V+ G++ I+GP+G GK+TL+ + G L +G + + K + A
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK-----ADEGRVYFENKDITNKEPA 77
Query: 108 EVKRRTGFVAQNNVFYP--HLTVAETLVFTALL--RLP-NSL-------KREEKVLHAEA 155
E+ G V P +TV E L+ + P NSL K EE V A
Sbjct: 78 EL-YHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFK 136
Query: 156 VINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKK 215
++ L L+ + R LSGG+ K + IG+ L+ NP ++ +D+P +G+ +A
Sbjct: 137 ILEFLKLSHLYD-----RKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHD 191
Query: 216 ILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267
I + +L G T L+ H+ L Y+ + L + +G + G+GE+ I
Sbjct: 192 IFNHVLELKAKGITFLIIEHRLDIVLNYIDH--LYVMFNGQIIAEGRGEEEI 241
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 73/145 (50%), Gaps = 17/145 (11%)
Query: 67 ILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--EVKRRTGFVAQNNVFYP 124
+LGP+G GK+ L + G + + G + NG + +R GFV Q+ +P
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDR-----GEVRLNGADITPLPPERRGIGFVPQDYALFP 83
Query: 125 HLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERK 184
HL+V + + +++R E+ + +LG+A + R LSGGER+
Sbjct: 84 HLSVYRNIAYGL-----RNVERVERDRRVREMAEKLGIAHLLD-----RKPARLSGGERQ 133
Query: 185 RISIGQELLINPSLLFLDEPTSGLD 209
R+++ + L+I P LL LDEP S +D
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAVD 158
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 102/221 (46%), Gaps = 22/221 (9%)
Query: 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA 107
E + + ++ ++ G++LA+LG +GCGK+TLL L G H GK
Sbjct: 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGI-----------HRPIQGK---I 62
Query: 108 EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRN 167
EV + GFV Q F+ A +++ L+ + K + + L
Sbjct: 63 EVYQSIGFVPQ---FFSS-PFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNL 118
Query: 168 SIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG- 226
+ + R LSGG+R+ I I + + L+ LDEPTS LD +L L LA+
Sbjct: 119 THLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQ 178
Query: 227 GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267
T++ T HQP + + + NK LLL + + FG+ +++
Sbjct: 179 NMTVVFTTHQP-NQVVAIANKTLLL--NKQNFKFGETRNIL 216
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 98/213 (46%), Gaps = 21/213 (9%)
Query: 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKD 91
M+K N+ + L VS V G++ ++G SG GK+TL+ R N +
Sbjct: 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLI-----RCVNLLE 55
Query: 92 TVTQGHITYNGKQFSA-------EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSL 144
T+G + +G++ + + +R+ G + Q+ TV + L L N+
Sbjct: 56 RPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALP--LELDNTP 113
Query: 145 KREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEP 204
K E K E +++ +GL +S LSGG+++R++I + L NP +L DE
Sbjct: 114 KDEVKRRVTE-LLSLVGLGDKHDSYPSN-----LSGGQKQRVAIARALASNPKVLLCDEA 167
Query: 205 TSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQ 236
TS LD + IL L + G TIL+ H+
Sbjct: 168 TSALDPATTRSILELLKDINRRLGLTILLITHE 200
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 98/213 (46%), Gaps = 21/213 (9%)
Query: 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKD 91
M+K N+ + L VS V G++ ++G SG GK+TL+ R N +
Sbjct: 24 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLI-----RCVNLLE 78
Query: 92 TVTQGHITYNGKQFSA-------EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSL 144
T+G + +G++ + + +R+ G + Q+ TV + L L N+
Sbjct: 79 RPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALP--LELDNTP 136
Query: 145 KREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEP 204
K E K E +++ +GL +S LSGG+++R++I + L NP +L D+
Sbjct: 137 KDEVKRRVTE-LLSLVGLGDKHDSYPSN-----LSGGQKQRVAIARALASNPKVLLCDQA 190
Query: 205 TSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQ 236
TS LD + IL L + G TIL+ H+
Sbjct: 191 TSALDPATTRSILELLKDINRRLGLTILLITHE 223
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 101/192 (52%), Gaps = 19/192 (9%)
Query: 52 LKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS----A 107
L+ ++ + G+ +A++G SG GK+T+ +L R + + +GHI +G A
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTI-ASLITRFYD----IDEGHILMDGHDLREYTLA 413
Query: 108 EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLP-NSLKREEKVLHAEAVINQL--GLAR 164
++ + V+QN V + TVA + + ++ ++ +A IN++ GL
Sbjct: 414 SLRNQVALVSQN-VHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGL-- 470
Query: 165 CRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLA 224
++IIG V LSGG+R+RI+I + LL + +L LDE TS LD+ + I +L +L
Sbjct: 471 --DTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL- 526
Query: 225 EGGRTILMTIHQ 236
+ RT L+ H+
Sbjct: 527 QKNRTSLVIAHR 538
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 102/219 (46%), Gaps = 25/219 (11%)
Query: 51 ILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVK 110
+LK ++ + G+LLA+ G +G GKT+LL + G L ++G I ++G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-----PSEGKIKHSG-------- 99
Query: 111 RRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSII 170
R F +QN+ P T+ E ++ + R V+ A + + +++I+
Sbjct: 100 -RISFCSQNSWIMPG-TIKENIIGVSYDEY-----RYRSVIKACQLEEDISKFAEKDNIV 152
Query: 171 GGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVS-LSKLAEGGRT 229
G LSGG+R RIS+ + + + L LD P LD K+I S + KL
Sbjct: 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 212
Query: 230 ILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVIN 268
IL+T +KIL+L +GSS ++G ++ N
Sbjct: 213 ILVTSKMEH---LKKADKILIL-HEGSSYFYGTFSELQN 247
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 99/212 (46%), Gaps = 25/212 (11%)
Query: 51 ILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVK 110
+LK ++ + G+LLA+ G +G GKT+LL + G L ++G I ++G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-----PSEGKIKHSG-------- 99
Query: 111 RRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSII 170
R F +QN+ P T+ E ++ + R V+ A + + +++I+
Sbjct: 100 -RISFCSQNSWIMPG-TIKENIIGVSYDEY-----RYRSVIKACQLEEDISKFAEKDNIV 152
Query: 171 GGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVS-LSKLAEGGRT 229
G LSGG+R RIS+ + + + L LD P LD K+I S + KL
Sbjct: 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 212
Query: 230 ILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261
IL+T +KIL+L +GSS ++G
Sbjct: 213 ILVTSKMEH---LKKADKILIL-HEGSSYFYG 240
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 112/226 (49%), Gaps = 24/226 (10%)
Query: 23 ELQKQNVEDMLKKVNMLVIIKN-----SDEEKMILKGVSGAVSPGELLAILGPSGCGKTT 77
E ++ N + ++VN V +K+ +EK L VS ++ G+ +A++G SG GK+T
Sbjct: 325 ETERDNGKYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKST 384
Query: 78 LLTALGGRLSNGKDTVTQGHITYNGKQFS----AEVKRRTGFVAQNNVFYPHLTVAETLV 133
+ L R + V G I +G ++R V+QN V + T+A +
Sbjct: 385 IAN-LFTRFYD----VDSGSICLDGHDVRDYKLTNLRRHFALVSQN-VHLFNDTIANNIA 438
Query: 134 FTALLRLP-NSLKREEKVLHAEAVINQL--GLARCRNSIIGGRLVRGLSGGERKRISIGQ 190
+ A +++ + HA I + GL +++IG LSGG+R+R++I +
Sbjct: 439 YAAEGEYTREQIEQAARQAHAMEFIENMPQGL----DTVIGENGT-SLSGGQRQRVAIAR 493
Query: 191 ELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQ 236
LL + +L LDE TS LD+ + I +L +L + +T+L+ H+
Sbjct: 494 ALLRDAPVLILDEATSALDTESERAIQAALDEL-QKNKTVLVIAHR 538
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 105/223 (47%), Gaps = 27/223 (12%)
Query: 51 ILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVK 110
+LK V+ G++ ++G +G GKTTLL L G L+ G I +G +
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLA------AAGEIFLDGSPADPFLL 79
Query: 111 RR-TGFVAQN-NVFYPHLTVAETLVFT-ALLRLPNS--LKREEKVLHAEAVINQLGLARC 165
R+ G+V QN + TV E + F+ ++ L S KR +KVL ++ GLA
Sbjct: 80 RKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKVLE---LVGLSGLAAA 136
Query: 166 RNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAE 225
LSGG+++R++I L + L LDEP S LD ++I L L
Sbjct: 137 DP--------LNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKN 188
Query: 226 GGRTILMTIHQPASSLFYMFNKILLLS-SDGSSLYFGKGEDVI 267
G+ I++ H+ L Y+ + +L S+G+ + G E+ +
Sbjct: 189 EGKGIILVTHE----LEYLDDMDFILHISNGTIDFCGSWEEFV 227
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 106/221 (47%), Gaps = 28/221 (12%)
Query: 51 ILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVK 110
+LK ++ + G+LLA+ G +G GKT+LL + G L ++G I ++G
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-----SEGKIKHSG-------- 81
Query: 111 RRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSII 170
R F +Q + P T+ E ++F + R V+ A + + +++I+
Sbjct: 82 -RISFCSQFSWIMPG-TIKENIIFG----VSYDEYRYRSVIKACQLEEDISKFAEKDNIV 135
Query: 171 GGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVS-LSKLAEGGRT 229
G LSGG+R RIS+ + + + L LD P LD K+I S + KL
Sbjct: 136 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 195
Query: 230 ILMTIHQPASSLFYM--FNKILLLSSDGSSLYFGKGEDVIN 268
IL+T S + ++ +KIL+L +GSS ++G ++ N
Sbjct: 196 ILVT-----SKMEHLKKADKILIL-HEGSSYFYGTFSELQN 230
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 92/193 (47%), Gaps = 21/193 (10%)
Query: 52 LKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107
L VS V G++ ++G SG GK+TL+ R N + T+G + +G++ +
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLI-----RCVNLLERPTEGSVLVDGQELTTLSES 98
Query: 108 ---EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLAR 164
+ +R+ G + Q+ TV + L L N+ K E K E +++ +GL
Sbjct: 99 ELTKARRQIGXIFQHFNLLSSRTVFGNVALP--LELDNTPKDEVKRRVTE-LLSLVGLGD 155
Query: 165 CRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLA 224
+S LSGG+++R++I + L NP +L D+ TS LD + IL L +
Sbjct: 156 KHDSYPSN-----LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDIN 210
Query: 225 EG-GRTILMTIHQ 236
G TIL+ H+
Sbjct: 211 RRLGLTILLITHE 223
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 111/239 (46%), Gaps = 25/239 (10%)
Query: 38 MLVIIKNSD-EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQG 96
M ++++ D E L +SG V GE+L ++GP+G GK+TLL + G +++GK G
Sbjct: 1 MSIVMQLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGK-----G 54
Query: 97 HITYNGKQFSAEVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAV 156
I + G+ A + +L+ +T F + +L + +K +
Sbjct: 55 SIQFAGQPLEAWSATKLAL------HRAYLSQQQTPPFATPVWHYLTLHQHDKT--RTEL 106
Query: 157 INQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELL-----INPS--LLFLDEPTSGLD 209
+N + A + + GR LSGGE +R+ + +L NP+ LL LD+P + LD
Sbjct: 107 LNDVAGALALDDKL-GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLD 165
Query: 210 STMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVIN 268
+ LS L++ G I+M+ H +L + LL G L G+ E+V+
Sbjct: 166 VAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLL--KGGKMLASGRREEVLT 222
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 106/221 (47%), Gaps = 28/221 (12%)
Query: 51 ILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVK 110
+LK ++ + G+LLA+ G +G GKT+LL + G L ++G I ++G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-----SEGKIKHSG-------- 69
Query: 111 RRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSII 170
R F +Q + P T+ E ++F + R V+ A + + +++I+
Sbjct: 70 -RISFCSQFSWIMPG-TIKENIIFG----VSYDEYRYRSVIKACQLEEDISKFAEKDNIV 123
Query: 171 GGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVS-LSKLAEGGRT 229
G LSGG+R RIS+ + + + L LD P LD K+I S + KL
Sbjct: 124 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 183
Query: 230 ILMTIHQPASSLFYM--FNKILLLSSDGSSLYFGKGEDVIN 268
IL+T S + ++ +KIL+L +GSS ++G ++ N
Sbjct: 184 ILVT-----SKMEHLKKADKILIL-HEGSSYFYGTFSELQN 218
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 100/198 (50%), Gaps = 18/198 (9%)
Query: 51 ILKGVSGAVSPGELLAILGPSGCGKTTLLTAL--------GGRLSNGKDT----VTQGHI 98
+LKGVS G++++I+G SG GK+T L + G + NG++ G +
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 99 TYNGKQFSAEVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVIN 158
K ++ R V Q+ + H+TV E ++ + L L + + A +
Sbjct: 81 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKHDARERALKYLA 138
Query: 159 QLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILV 218
++G+ + G+ LSGG+++R+SI + L + P +L DEPTS LD + ++L
Sbjct: 139 KVGI----DERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLR 194
Query: 219 SLSKLAEGGRTILMTIHQ 236
+ +LAE G+T+++ H+
Sbjct: 195 IMQQLAEEGKTMVVVTHE 212
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 110/239 (46%), Gaps = 25/239 (10%)
Query: 38 MLVIIKNSD-EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQG 96
M ++++ D E L +SG V GE+L ++GP+G GK+TLL + G +++GK G
Sbjct: 1 MSIVMQLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGK-----G 54
Query: 97 HITYNGKQFSAEVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAV 156
I + G+ A + +L+ +T F + +L + +K +
Sbjct: 55 SIQFAGQPLEAWSATKLAL------HRAYLSQQQTPPFATPVWHYLTLHQHDKT--RTEL 106
Query: 157 INQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELL-----INPS--LLFLDEPTSGLD 209
+N + A + + GR LSGGE +R+ + +L NP+ LL LD+P LD
Sbjct: 107 LNDVAGALALDDKL-GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLD 165
Query: 210 STMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVIN 268
+ LS L++ G I+M+ H +L + LL G L G+ E+V+
Sbjct: 166 VAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLL--KGGKMLASGRREEVLT 222
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 112/237 (47%), Gaps = 23/237 (9%)
Query: 42 IKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYN 101
I + K ILK +S ++ G+ + G +G GKTTLL L N + T G +
Sbjct: 27 IGRXKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNIL-----NAYEPATSGTVNLF 81
Query: 102 GKQ-----FSAE-VKRRTGFVAQN--NVFYPHLTVAETLVFTALLRLPNSLKREEKVLH- 152
GK +SAE V++ GFV+ + F V + ++ A + ++++ +
Sbjct: 82 GKXPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNE 141
Query: 153 AEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTM 212
A ++ +G + IG LS GE++R+ I + L P +L LDEP +GLD +
Sbjct: 142 AHQLLKLVGXSAKAQQYIGY-----LSTGEKQRVXIARALXGQPQVLILDEPAAGLD-FI 195
Query: 213 AKKILVSLSKLAEGGRTILMTIH--QPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267
A++ L+S+ L I+ + F+KILLL DG S+ G ED++
Sbjct: 196 ARESLLSILDSLSDSYPTLAXIYVTHFIEEITANFSKILLL-KDGQSIQQGAVEDIL 251
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 101/192 (52%), Gaps = 19/192 (9%)
Query: 52 LKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS----A 107
L+ ++ + G+ +A++G SG GK+T+ +L R + + +G I +G A
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTI-ASLITRFYD----IDEGEILMDGHDLREYTLA 413
Query: 108 EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLP-NSLKREEKVLHAEAVINQL--GLAR 164
++ + V+QN V + TVA + + + ++ ++ +A IN++ GL
Sbjct: 414 SLRNQVALVSQN-VHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGL-- 470
Query: 165 CRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLA 224
+++IG V LSGG+R+RI+I + LL + +L LDE TS LD+ + I +L +L
Sbjct: 471 --DTVIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL- 526
Query: 225 EGGRTILMTIHQ 236
+ RT L+ H+
Sbjct: 527 QKNRTSLVIAHR 538
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 103/227 (45%), Gaps = 36/227 (15%)
Query: 51 ILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVK 110
+LK ++ + GE+LAI G +G GKT+LL + G L ++G I ++G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE-----ASEGIIKHSG-------- 99
Query: 111 RRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQL-GLARCRNSI 169
R F +Q + P T+ E ++F + R + V+ A + + A N++
Sbjct: 100 -RVSFCSQFSWIMPG-TIKENIIFG----VSYDEYRYKSVVKACQLQQDITKFAEQDNTV 153
Query: 170 IGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVS-LSKLAEGGR 228
+G V LSGG+R RIS+ + + + L LD P LD +++ S + KL
Sbjct: 154 LGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKT 212
Query: 229 TILMT--------------IHQPASSLFYMFNKILLLSSDGSSLYFG 261
IL+T +HQ +S + F+++ L D SS G
Sbjct: 213 RILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMG 259
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 103/227 (45%), Gaps = 36/227 (15%)
Query: 51 ILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVK 110
+LK ++ + GE+LAI G +G GKT+LL + G L ++G I ++G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE-----ASEGIIKHSG-------- 99
Query: 111 RRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQL-GLARCRNSI 169
R F +Q + P T+ E ++F + R + V+ A + + A N++
Sbjct: 100 -RVSFCSQFSWIMPG-TIKENIIFG----VSYDEYRYKSVVKACQLQQDITKFAEQDNTV 153
Query: 170 IGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVS-LSKLAEGGR 228
+G V LSGG+R RIS+ + + + L LD P LD +++ S + KL
Sbjct: 154 LGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKT 212
Query: 229 TILMT--------------IHQPASSLFYMFNKILLLSSDGSSLYFG 261
IL+T +HQ +S + F+++ L D SS G
Sbjct: 213 RILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMG 259
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 101/219 (46%), Gaps = 24/219 (10%)
Query: 51 ILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVK 110
+LK ++ + G+LLA+ G +G GKT+LL + G L ++G I ++G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-----PSEGKIKHSG-------- 99
Query: 111 RRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSII 170
R F +Q + P T+ E ++ + R V+ A + + +++I+
Sbjct: 100 -RISFCSQFSWIMPG-TIKENII----AGVSYDEYRYRSVIKACQLEEDISKFAEKDNIV 153
Query: 171 GGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVS-LSKLAEGGRT 229
G LSGG+R RIS+ + + + L LD P LD K+I S + KL
Sbjct: 154 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 213
Query: 230 ILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVIN 268
IL+T +KIL+L +GSS ++G ++ N
Sbjct: 214 ILVTSKMEH---LKKADKILIL-HEGSSYFYGTFSELQN 248
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 105/221 (47%), Gaps = 29/221 (13%)
Query: 51 ILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVK 110
+LK ++ + G+LLA+ G +G GKT+LL + G L ++G I ++G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-----SEGKIKHSG-------- 69
Query: 111 RRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSII 170
R F +Q + P T+ E ++ + R V+ A + + +++I+
Sbjct: 70 -RISFCSQFSWIMPG-TIKENIIGVSYDEY-----RYRSVIKACQLEEDISKFAEKDNIV 122
Query: 171 GGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVS-LSKLAEGGRT 229
G LSGG+R RIS+ + + + L LD P LD K+I S + KL
Sbjct: 123 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 182
Query: 230 ILMTIHQPASSLFYM--FNKILLLSSDGSSLYFGKGEDVIN 268
IL+T S + ++ +KIL+L +GSS ++G ++ N
Sbjct: 183 ILVT-----SKMEHLKKADKILIL-HEGSSYFYGTFSELQN 217
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 100/227 (44%), Gaps = 24/227 (10%)
Query: 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA 107
E L +SG V GE+L ++GP+G GK+TLL G S +G I + G+ A
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG------KGSIQFAGQPLEA 65
Query: 108 EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRN 167
+ +L+ +T F + +L + +K ++N + A +
Sbjct: 66 WSATKLAL------HRAYLSQQQTPPFATPVWHYLTLHQHDKT--RTELLNDVAGALALD 117
Query: 168 SIIGGRLVRGLSGGERKRISIGQELL-----INPS--LLFLDEPTSGLDSTMAKKILVSL 220
+ GR LSGGE +R+ + +L NP+ LL LDEP + LD + L
Sbjct: 118 DKL-GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKIL 176
Query: 221 SKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267
S L++ G I+ + H +L + LL G L G+ E+V+
Sbjct: 177 SALSQQGLAIVXSSHDLNHTLRHAHRAWLL--KGGKXLASGRREEVL 221
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 99/227 (43%), Gaps = 24/227 (10%)
Query: 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA 107
E L +SG V GE+L ++GP+G GK+TLL G S +G I + G+ A
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG------KGSIQFAGQPLEA 65
Query: 108 EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRN 167
+ +L+ +T F + +L + +K ++N + A +
Sbjct: 66 WSATKLAL------HRAYLSQQQTPPFATPVWHYLTLHQHDKT--RTELLNDVAGALALD 117
Query: 168 SIIGGRLVRGLSGGERKRISIGQELL-----INPS--LLFLDEPTSGLDSTMAKKILVSL 220
+ GR LSGGE +R+ + +L NP+ LL LDEP + LD + L
Sbjct: 118 DKL-GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKIL 176
Query: 221 SKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267
S L + G I+ + H +L + LL G L G+ E+V+
Sbjct: 177 SALCQQGLAIVXSSHDLNHTLRHAHRAWLL--KGGKXLASGRREEVL 221
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 79/166 (47%), Gaps = 19/166 (11%)
Query: 52 LKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKR 111
L G++ ++ G L+A++G GCGK++LL+AL + +GH+ +K
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK-----VEGHVA---------IKG 66
Query: 112 RTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIG 171
+V Q + + ++ E ++F L P V+ A A++ L + +
Sbjct: 67 SVAYVPQ-QAWIQNDSLRENILFGCQLEEP----YYRSVIQACALLPDLEILPSGDRTEI 121
Query: 172 GRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKIL 217
G LSGG+++R+S+ + + N + D+P S +D+ + K I
Sbjct: 122 GEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIF 167
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 101/226 (44%), Gaps = 35/226 (15%)
Query: 51 ILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVK 110
+LK ++ + GE+LAI G +G GKT+LL + G L ++G I ++G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE-----ASEGIIKHSG-------- 99
Query: 111 RRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSII 170
R F +Q + P T+ E ++ + + + + V + + A N+++
Sbjct: 100 -RVSFCSQFSWIMPG-TIKENIIGVSY----DEYRYKSVVKACQLQQDITKFAEQDNTVL 153
Query: 171 GGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVS-LSKLAEGGRT 229
G V LSGG+R RIS+ + + + L LD P LD +++ S + KL
Sbjct: 154 GEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTR 212
Query: 230 ILMT--------------IHQPASSLFYMFNKILLLSSDGSSLYFG 261
IL+T +HQ +S + F+++ L D SS G
Sbjct: 213 ILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMG 258
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 86/184 (46%), Gaps = 12/184 (6%)
Query: 59 VSPGELLAILGPSGCGKTTLLTALGGRLSN---GKDTVTQGHI-TYNGKQFSAEVKRRTG 114
V G ++ I+GP+G GK+T + L G+L G + G I + G + ++
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN 103
Query: 115 FVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRL 174
+ V ++ + V ++ L LK+ ++ E V+ L L R
Sbjct: 104 GEIRPVVKPQYVDLIPKAVKGKVIEL---LKKADETGKLEEVVKALELENVLE-----RE 155
Query: 175 VRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTI 234
++ LSGGE +R++I LL N + F DEP+S LD ++ +L+E G+++L+
Sbjct: 156 IQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVE 215
Query: 235 HQPA 238
H A
Sbjct: 216 HDLA 219
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 86/198 (43%), Gaps = 26/198 (13%)
Query: 57 GAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFV 116
G + GE++ I+GP+G GKTT + L G + T+G I ++ V + ++
Sbjct: 307 GEIKKGEVIGIVGPNGIGKTTFVKXLAG-----VEEPTEGKI-----EWDLTVAYKPQYI 356
Query: 117 AQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVR 176
+ TV E L +L ++ + E ++ LG+ + R V
Sbjct: 357 KADY----EGTVYELLSKIDASKLNSNFYKTE-------LLKPLGIIDLYD-----REVN 400
Query: 177 GLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQ 236
LSGGE +R++I LL + + LDEP++ LD + ++ L E + +
Sbjct: 401 ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEH 460
Query: 237 PASSLFYMFNKILLLSSD 254
+ Y+ +++ + +
Sbjct: 461 DVLXIDYVSDRLXVFEGE 478
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 101/226 (44%), Gaps = 34/226 (15%)
Query: 51 ILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVK 110
+LK ++ + GE+LAI G +G GKT+LL + G L ++G I ++G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE-----ASEGIIKHSG-------- 99
Query: 111 RRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSII 170
R F +Q + P T+ E ++ + + K K + I + A N+++
Sbjct: 100 -RVSFCSQFSWIMPG-TIKENII-SGVSYDEYRYKSVVKACQLQQDITK--FAEQDNTVL 154
Query: 171 GGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVS-LSKLAEGGRT 229
G V LSGG+R RIS+ + + + L LD P LD +++ S + KL
Sbjct: 155 GEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTR 213
Query: 230 ILMT--------------IHQPASSLFYMFNKILLLSSDGSSLYFG 261
IL+T +HQ +S + F+++ L D SS G
Sbjct: 214 ILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMG 259
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 98/212 (46%), Gaps = 24/212 (11%)
Query: 51 ILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVK 110
+LK ++ + G+LLA+ G +G GKT+LL + G L ++G I ++G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-----PSEGKIKHSG-------- 99
Query: 111 RRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSII 170
R F +Q + P T+ E ++F + R V+ A + + +++I+
Sbjct: 100 -RISFCSQFSWIMPG-TIKENIIFG----VSYDEYRYRSVIKACQLEEDISKFAEKDNIV 153
Query: 171 GGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVS-LSKLAEGGRT 229
G LS G++ +IS+ + + + L LD P LD K+I S + KL
Sbjct: 154 LGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 213
Query: 230 ILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261
IL+T +KIL+L +GSS ++G
Sbjct: 214 ILVTSKMEH---LKKADKILIL-HEGSSYFYG 241
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 102/227 (44%), Gaps = 36/227 (15%)
Query: 51 ILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVK 110
+LK ++ + GE+LAI G +G GKT+LL + G L ++G I ++G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE-----ASEGIIKHSG-------- 99
Query: 111 RRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQL-GLARCRNSI 169
R F +Q + P T+ E ++ + R + V+ A + + A N++
Sbjct: 100 -RVSFCSQFSWIMPG-TIKENII----RGVSYDEYRYKSVVKACQLQQDITKFAEQDNTV 153
Query: 170 IGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVS-LSKLAEGGR 228
+G V LSGG+R RIS+ + + + L LD P LD +++ S + KL
Sbjct: 154 LGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKT 212
Query: 229 TILMT--------------IHQPASSLFYMFNKILLLSSDGSSLYFG 261
IL+T +HQ +S + F+++ L D SS G
Sbjct: 213 RILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMG 259
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 91/188 (48%), Gaps = 13/188 (6%)
Query: 52 LKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKR 111
LK ++ + G A++G +G GK+T+ L R + + + G N K ++
Sbjct: 36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLLY-RFYDAEGDIKIGGKNVN-KYNRNSIRS 93
Query: 112 RTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIG 171
G V Q+ + + T+ +++ L + + K I L + ++I+G
Sbjct: 94 IIGIVPQDTILFNE-TIKYNILYGKLDATDEEVIKATKSAQLYDFIE--ALPKKWDTIVG 150
Query: 172 GRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDST---MAKKILVSLSKLAEGGR 228
+ ++ LSGGER+RI+I + LL +P ++ DE TS LDS + +K + L K R
Sbjct: 151 NKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK----NR 205
Query: 229 TILMTIHQ 236
T+++ H+
Sbjct: 206 TLIIIAHR 213
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 97/212 (45%), Gaps = 25/212 (11%)
Query: 51 ILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVK 110
+LK ++ + G+LLA+ G +G GKT+LL + G L ++G I ++G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-----PSEGKIKHSG-------- 99
Query: 111 RRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSII 170
R F +Q + P T+ E ++ + R V+ A + + +++I+
Sbjct: 100 -RISFCSQFSWIMPG-TIKENIIGVSYDEY-----RYRSVIKACQLEEDISKFAEKDNIV 152
Query: 171 GGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVS-LSKLAEGGRT 229
G LS G++ +IS+ + + + L LD P LD K+I S + KL
Sbjct: 153 LGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 212
Query: 230 ILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261
IL+T +KIL+L +GSS ++G
Sbjct: 213 ILVTSKMEH---LKKADKILIL-HEGSSYFYG 240
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 82/185 (44%), Gaps = 18/185 (9%)
Query: 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA 107
+K +L+ ++ + G ++ GP+G GKTTLL + L K G I YNG +
Sbjct: 21 DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLK-----GEIIYNGVPIT- 74
Query: 108 EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRN 167
+VK + F+ + + ++V + L A L K E ++ A + L L +
Sbjct: 75 KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNE--IMDALESVEVLDLKKKLG 132
Query: 168 SIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVS-LSKLAEG 226
LS G +R+ + LL+N + LD+P +D K+L S L L E
Sbjct: 133 E---------LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEK 183
Query: 227 GRTIL 231
G I+
Sbjct: 184 GIVII 188
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 102/221 (46%), Gaps = 29/221 (13%)
Query: 33 LKKVNMLVIIKNSD--------EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTAL-- 82
L +NM ++K D +L+G++ + PG++ A++GP+G GK+T+ L
Sbjct: 8 LAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQN 67
Query: 83 -----GGR-LSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTVAETLVFTA 136
GG+ L +G+ V H Y Q +A V Q + + + E + +
Sbjct: 68 LYQPTGGKVLLDGEPLVQYDH-HYLHTQVAA--------VGQEPLLFGR-SFRENIAY-G 116
Query: 137 LLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINP 196
L R P + + + A G + ++ +G LSGG+R+ +++ + L+ P
Sbjct: 117 LTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVG-ETGNQLSGGQRQAVALARALIRKP 175
Query: 197 SLLFLDEPTSGLDSTMAKKILVSLSKLAE-GGRTILMTIHQ 236
LL LD+ TS LD+ ++ L + E RT+L+ HQ
Sbjct: 176 RLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITHQ 216
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 88/184 (47%), Gaps = 31/184 (16%)
Query: 51 ILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--- 107
IL+ +S ++SPG+ + +LG +G GK+TLL+A RL N T+G I +G + +
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAF-LRLLN-----TEGEIQIDGVSWDSITL 89
Query: 108 EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRL---PNSLKREEKVLHAEAVINQLGLAR 164
E R+ V VF +F+ R PN+ ++++ V +++GL
Sbjct: 90 EQWRKAFGVIPQKVF----------IFSGTFRKNLDPNAAHSDQEIW---KVADEVGLRS 136
Query: 165 CRNSIIGGR---LVRG---LSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILV 218
G LV G LS G ++ + + + +L +L LDEP++ LD + I
Sbjct: 137 VIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRR 196
Query: 219 SLSK 222
+L +
Sbjct: 197 TLKQ 200
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 96/227 (42%), Gaps = 30/227 (13%)
Query: 30 EDMLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNG 89
+D+ K+ IIK + ++++ +G GE++ ILGP+G GKTT L G +
Sbjct: 264 KDLKTKMKWTKIIKKLGDFQLVVD--NGEAKEGEIIGILGPNGIGKTTFARILVGEI--- 318
Query: 90 KDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHL--TVAETLVFTALLRLPNSLKRE 147
T +G +T + S + +R +P+ TV + L + L S
Sbjct: 319 --TADEGSVTPEKQILSYKPQR----------IFPNYDGTVQQYLENASKDALSTS---- 362
Query: 148 EKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSG 207
E V +L L R S V LSGGE +++ I L L LD+P+S
Sbjct: 363 --SWFFEEVTKRLNLHRLLESN-----VNDLSGGELQKLYIAATLAKEADLYVLDQPSSY 415
Query: 208 LDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSD 254
LD + ++ ++ + + I S Y+ ++I++ +
Sbjct: 416 LDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGE 462
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 74/173 (42%), Gaps = 38/173 (21%)
Query: 64 LLAILGPSGCGKTTLLTALGGRL---------SNGKDTVTQ---GHITYN--GKQFSAEV 109
+L +LG +G GKTT+L L G + GKD V + G YN + +S E+
Sbjct: 27 ILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNEL 86
Query: 110 K--RRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRN 167
K + +V + F TV E L ++ K++E + ++N L
Sbjct: 87 KIVHKIQYVEYASKFLKG-TVNEILT-----KIDERGKKDE----VKELLNMTNLWNKDA 136
Query: 168 SIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDS----TMAKKI 216
+I LSGG +R+ + LL + D+P+S LD MAK I
Sbjct: 137 NI--------LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAI 181
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 79/177 (44%), Gaps = 37/177 (20%)
Query: 54 GVSGAVSPGELLAILGPSGCGKTTLLTALGGRLS-NGKDTVTQGHITYNGKQF----SAE 108
G+S + + AI+G S GK+T++ A+ L NG+ + G + Y GK E
Sbjct: 26 GISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGR--ILSGRVLYKGKDLLTMREEE 83
Query: 109 VKR----RTGFVAQ--NNVFYPHLTVAETLVFTAL---LRLPNSL---KREEKV----LH 152
+++ V Q P + V E T +R +S K EK+ L+
Sbjct: 84 LRKIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMVRLN 143
Query: 153 AEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLD 209
EAV+N L LSGG ++R+ I LL++P +L LDEPTS LD
Sbjct: 144 PEAVLNSYPLQ--------------LSGGMKQRVLIALALLLDPVVLILDEPTSALD 186
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/201 (21%), Positives = 85/201 (42%), Gaps = 30/201 (14%)
Query: 56 SGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGF 115
G + GE++ I+GP+G GKTT + L G + T+G + ++
Sbjct: 376 PGEIRKGEVIGIVGPNGIGKTTFVKMLAG-----VEEPTEGKVEWD-------------- 416
Query: 116 VAQNNVFYPHLTVAET--LVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGR 173
+ P AE V+ L ++ +S + + ++ LG+ + R
Sbjct: 417 --LTVAYKPQYIKAEYEGTVYELLSKIDSS--KLNSNFYKTELLKPLGIIDLYD-----R 467
Query: 174 LVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMT 233
V LSGGE +R++I LL + + LDEP++ LD + ++ L E +
Sbjct: 468 NVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV 527
Query: 234 IHQPASSLFYMFNKILLLSSD 254
+ + Y+ +++++ +
Sbjct: 528 VEHDVLMIDYVSDRLIVFEGE 548
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 22/189 (11%)
Query: 59 VSPGELLAILGPSGCGKTTLLTALGGRL----SNGKDTVTQGHITYNGKQFSAEVKRRTG 114
V G ++ I+GP+G GKTT + L G+L D+ + G + +R
Sbjct: 114 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFER--- 170
Query: 115 FVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLG-----LARCRNSI 169
+N P + + LL P ++K KV ++++G +
Sbjct: 171 --LKNGEIRPVVKPQ----YVDLL--PKAVK--GKVRELLKKVDEVGKFEEVVKELELEN 220
Query: 170 IGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRT 229
+ R + LSGGE +R++I LL F DEP+S LD K+ + +LA G+
Sbjct: 221 VLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKA 280
Query: 230 ILMTIHQPA 238
+L+ H A
Sbjct: 281 VLVVEHDLA 289
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/201 (21%), Positives = 85/201 (42%), Gaps = 30/201 (14%)
Query: 56 SGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGF 115
G + GE++ I+GP+G GKTT + L G + T+G + ++
Sbjct: 362 PGEIRKGEVIGIVGPNGIGKTTFVKMLAG-----VEEPTEGKVEWD-------------- 402
Query: 116 VAQNNVFYPHLTVAET--LVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGR 173
+ P AE V+ L ++ +S + + ++ LG+ + R
Sbjct: 403 --LTVAYKPQYIKAEYEGTVYELLSKIDSS--KLNSNFYKTELLKPLGIIDLYD-----R 453
Query: 174 LVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMT 233
V LSGGE +R++I LL + + LDEP++ LD + ++ L E +
Sbjct: 454 NVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV 513
Query: 234 IHQPASSLFYMFNKILLLSSD 254
+ + Y+ +++++ +
Sbjct: 514 VEHDVLMIDYVSDRLIVFEGE 534
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 22/189 (11%)
Query: 59 VSPGELLAILGPSGCGKTTLLTALGGRL----SNGKDTVTQGHITYNGKQFSAEVKRRTG 114
V G ++ I+GP+G GKTT + L G+L D+ + G + +R
Sbjct: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFER--- 156
Query: 115 FVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLG-----LARCRNSI 169
+N P + + LL P ++K KV ++++G +
Sbjct: 157 --LKNGEIRPVVKPQ----YVDLL--PKAVK--GKVRELLKKVDEVGKFEEVVKELELEN 206
Query: 170 IGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRT 229
+ R + LSGGE +R++I LL F DEP+S LD K+ + +LA G+
Sbjct: 207 VLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKA 266
Query: 230 ILMTIHQPA 238
+L+ H A
Sbjct: 267 VLVVEHDLA 275
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 100/221 (45%), Gaps = 29/221 (13%)
Query: 33 LKKVNMLVIIKNSD--------EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTAL-- 82
L +NM ++K D +L+G++ + PG++ A++GP+G GK+T+ L
Sbjct: 8 LAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQN 67
Query: 83 -----GGR-LSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTVAETLVFTA 136
GG+ L +G+ V H Y Q +A V Q + + + E + +
Sbjct: 68 LYQPTGGKVLLDGEPLVQYDH-HYLHTQVAA--------VGQEPLLFGR-SFRENIAY-G 116
Query: 137 LLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINP 196
L R P + + + A G + ++ +G LSGG+R+ +++ + L+ P
Sbjct: 117 LTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVG-ETGNQLSGGQRQAVALARALIRKP 175
Query: 197 SLLFLDEPTSGLDSTMAKKILVSLSKLAE-GGRTILMTIHQ 236
LL LD TS LD+ ++ L + E RT+L+ Q
Sbjct: 176 RLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQ 216
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 82/181 (45%), Gaps = 44/181 (24%)
Query: 50 MILKGVSGAVSPGELLAILGPSGCGKTTLLTAL-------GGRLSNGKDTVTQGHITYNG 102
++L+G++ + PGE+ A++GP+G GK+T+ L GG+L + Q Y
Sbjct: 31 LVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLH 90
Query: 103 KQFSA--EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQL 160
+Q +A + + G Q N+ Y LT T+ EE I
Sbjct: 91 RQVAAVGQEPQVFGRSLQENIAY-GLTQKPTM--------------EE--------ITAA 127
Query: 161 GLARCRNSIIGGRLVRG-----------LSGGERKRISIGQELLINPSLLFLDEPTSGLD 209
+ +S I G L +G LSGG+R+ +++ + L+ P +L LD+ TS LD
Sbjct: 128 AVKSGAHSFISG-LPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALD 186
Query: 210 S 210
+
Sbjct: 187 A 187
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 16/113 (14%)
Query: 126 LTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKR 185
+TV E L F +P S+KR +VLH +GL + G+ LSGGE +R
Sbjct: 767 MTVDEALEF--FKNIP-SIKRTLQVLH------DVGLGYVKL----GQPATTLSGGEAQR 813
Query: 186 ISIGQELL---INPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIH 235
I + EL +L LDEPT GL +K++ L +L + G T+++ H
Sbjct: 814 IKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEH 866
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 178 LSGGERKRISIGQELL--INPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIH 235
LSGGE +RI + ++ + + LDEPT GL ++++ +L KL + G T+++ H
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524
Query: 236 Q 236
Sbjct: 525 D 525
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 69/144 (47%), Gaps = 28/144 (19%)
Query: 67 ILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHL 126
I GP+GCGK+TL+ A+ +G F + + RT +V ++++ H
Sbjct: 466 ICGPNGCGKSTLMRAIANGQVDG---------------FPTQEECRTVYV-EHDIDGTH- 508
Query: 127 TVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRI 186
++T V + E V EA+ ++L + +I + LSGG + ++
Sbjct: 509 --SDTSVLDFVF--------ESGVGTKEAIKDKLIEFGFTDEMIA-MPISALSGGWKMKL 557
Query: 187 SIGQELLINPSLLFLDEPTSGLDS 210
++ + +L N +L LDEPT+ LD+
Sbjct: 558 ALARAVLRNADILLLDEPTNHLDT 581
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 169 IIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGR 228
I+ +RGLSGG++ ++ + P L+ LDEPT+ LD + +L + EGG
Sbjct: 893 IVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF-EGGV 951
Query: 229 TIL 231
I+
Sbjct: 952 III 954
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 65 LAILGPSGCGKTTLLTALGGRL 86
+A++GP+G GK+TL+ L G L
Sbjct: 702 IAVIGPNGAGKSTLINVLTGEL 723
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 91/195 (46%), Gaps = 21/195 (10%)
Query: 51 ILKGVSGAVSPGELLAILGPSGCGKTTLLTAL-------GGR-LSNGKDTVTQGHITYNG 102
+L+G++ + PG++ A++GP+G GK+T+ L GG+ L +G+ V H Y
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDH-HYLH 92
Query: 103 KQFSAEVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGL 162
Q +A V Q + + + E + + L R P + + + A G
Sbjct: 93 TQVAA--------VGQEPLLFGR-SFRENIAY-GLTRTPTMEEITAVAMESGAHDFISGF 142
Query: 163 ARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSK 222
+ ++ + G L+ G+R+ +++ + L+ P LL LD TS LD+ ++ L +
Sbjct: 143 PQGYDTEV-GETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYE 201
Query: 223 LAE-GGRTILMTIHQ 236
E RT+L+ Q
Sbjct: 202 SPEWASRTVLLITQQ 216
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 147 EEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINP---SLLFLDE 203
E + A + ++GL R G+ LSGGE +RI + EL + ++ LDE
Sbjct: 704 ESAIFRALDTLREVGLGYLRL----GQPATELSGGEAQRIKLATELRRSGRGGTVYVLDE 759
Query: 204 PTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQ 236
PT+GL +++ L KL + G T++ H+
Sbjct: 760 PTTGLHPADVERLQRQLVKLVDAGNTVIAVEHK 792
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 178 LSGGERKRISIGQELLINPSLLF-----LDEPTSGLDSTMAKKILVSLSKLAEGGRTILM 232
LS GE +R+ + +L N LF LDEP++GL + +L +L L GG ++ +
Sbjct: 380 LSPGELQRLRLATQLYSN---LFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFV 436
Query: 233 TIH 235
H
Sbjct: 437 VEH 439
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 65/168 (38%), Gaps = 35/168 (20%)
Query: 61 PGELLAILGPSGCGKTTLLTALGGR----LSNGKDTVTQGHI----------TYNGKQFS 106
PG++L ++G +G GK+T L L G+ L D I Y K
Sbjct: 102 PGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLE 161
Query: 107 AEVKRRTGFVAQNNVFYPHLTVAETLVFTALLRL-----PNSLKREEKVLHAEAVINQLG 161
++K +N+ P LL+L P +KR K+L E V+
Sbjct: 162 DDIKAIIKPQYVDNI--PRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLK--- 216
Query: 162 LARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLD 209
R + LSGGE +R +IG + + DEP+S LD
Sbjct: 217 -----------RDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLD 253
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 30/162 (18%)
Query: 51 ILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRL--SNGKDTVTQGHITYNGKQFSAE 108
+L G S E+L ++G +G GKTTL+ L G L G+D + + +++ ++ + +
Sbjct: 367 VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD-IPKLNVSMKPQKIAPK 425
Query: 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNS 168
G V Q +F+ + P K L + +I+Q
Sbjct: 426 F---PGTVRQ--LFFKKI--------RGQFLNPQFQTDVVKPLRIDDIIDQ--------- 463
Query: 169 IIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDS 210
V+ LSGGE +R++I L I + +DEP++ LDS
Sbjct: 464 -----EVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDS 500
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 28/144 (19%)
Query: 67 ILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHL 126
I GP+GCGK+TL A+ +G F + + RT +V ++++ H
Sbjct: 466 ICGPNGCGKSTLXRAIANGQVDG---------------FPTQEECRTVYV-EHDIDGTH- 508
Query: 127 TVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRI 186
++T V + E V EA+ ++L + I + LSGG + ++
Sbjct: 509 --SDTSVLDFVF--------ESGVGTKEAIKDKLIEFGFTDEXIAXP-ISALSGGWKXKL 557
Query: 187 SIGQELLINPSLLFLDEPTSGLDS 210
++ + +L N +L LDEPT+ LD+
Sbjct: 558 ALARAVLRNADILLLDEPTNHLDT 581
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 169 IIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGR 228
I+ +RGLSGG++ ++ + P L+ LDEPT+ LD + +L + EGG
Sbjct: 893 IVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF-EGGV 951
Query: 229 TIL 231
I+
Sbjct: 952 III 954
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 65 LAILGPSGCGKTTLLTALGGRL 86
+A++GP+G GK+TL+ L G L
Sbjct: 702 IAVIGPNGAGKSTLINVLTGEL 723
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 28/144 (19%)
Query: 67 ILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHL 126
I GP+GCGK+TL A+ +G F + + RT +V ++++ H
Sbjct: 460 ICGPNGCGKSTLXRAIANGQVDG---------------FPTQEECRTVYV-EHDIDGTH- 502
Query: 127 TVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRI 186
++T V + E V EA+ ++L + I + LSGG + ++
Sbjct: 503 --SDTSVLDFVF--------ESGVGTKEAIKDKLIEFGFTDEXIAXP-ISALSGGWKXKL 551
Query: 187 SIGQELLINPSLLFLDEPTSGLDS 210
++ + +L N +L LDEPT+ LD+
Sbjct: 552 ALARAVLRNADILLLDEPTNHLDT 575
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 169 IIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGR 228
I+ +RGLSGG++ ++ + P L+ LDEPT+ LD + +L + EGG
Sbjct: 887 IVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF-EGGV 945
Query: 229 TIL 231
I+
Sbjct: 946 III 948
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 65 LAILGPSGCGKTTLLTALGGRL 86
+A++GP+G GK+TL+ L G L
Sbjct: 696 IAVIGPNGAGKSTLINVLTGEL 717
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 178 LSGGERKRISIGQELLINP---SLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTI 234
LSGGE +R+ + EL +L LDEPT+GL ++L L +L + G T+L+
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 235 H 235
H
Sbjct: 906 H 906
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 178 LSGGERKRISIGQEL--LINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIH 235
LSGGE +RI + ++ + L LDEP+ GL +++ +L + G T+++ H
Sbjct: 505 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSXRDLGNTLIVVEH 564
Query: 236 QPASSL 241
+ L
Sbjct: 565 DEDTXL 570
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 178 LSGGERKRISIGQELLINP---SLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTI 234
LSGGE +R+ + EL +L LDEPT+GL ++L L +L + G T+L+
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 235 H 235
H
Sbjct: 906 H 906
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 55/116 (47%), Gaps = 19/116 (16%)
Query: 178 LSGGERKRISIGQEL--LINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIH 235
LSGGE +RI + ++ + L LDEP+ GL +++ +L + + G T+++ H
Sbjct: 505 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 564
Query: 236 QPASSLFYMFNKILLLSSDGSSLYFGK------GEDVIN--------YFAGIGYVP 277
+ L + L+ G+ ++ G+ E+V+N Y +G ++P
Sbjct: 565 DEDTMLAADY---LIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQYLSGKKFIP 617
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 178 LSGGERKRISIGQELLINP---SLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTI 234
LSGGE +R+ + EL +L LDEPT+GL ++L L +L + G T+L+
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 603
Query: 235 H 235
H
Sbjct: 604 H 604
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 55/116 (47%), Gaps = 19/116 (16%)
Query: 178 LSGGERKRISIGQEL--LINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIH 235
LSGGE +RI + ++ + L LDEP+ GL +++ +L + + G T+++ H
Sbjct: 203 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 262
Query: 236 QPASSLFYMFNKILLLSSDGSSLYFGK------GEDVIN--------YFAGIGYVP 277
+ L + L+ G+ ++ G+ E+V+N Y +G ++P
Sbjct: 263 DEDTMLAADY---LIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQYLSGKKFIP 315
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 178 LSGGERKRISIGQELL---INPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTI 234
LSGGE +R+ + EL ++ LDEPT+GL +K+L ++ L + G T+++
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIE 923
Query: 235 H 235
H
Sbjct: 924 H 924
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 173 RLVRGLSGGERKRISIGQEL---LINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRT 229
R LSGGE +RI + ++ L+ L LDEP+ GL ++++ +L++L + G T
Sbjct: 517 RAAATLSGGEAQRIRLATQIGSGLVG-VLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNT 575
Query: 230 ILMTIH 235
+++ H
Sbjct: 576 LIVVEH 581
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 94/208 (45%), Gaps = 27/208 (12%)
Query: 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKD 91
M++ N+ + + E+ L+ ++ V+ GE + ILGP+G GKTTLL A+ G L
Sbjct: 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLP---- 55
Query: 92 TVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTVAET---LVFTALLRLPNSLKREE 148
G+I NG EV++ ++ + + T +V+ L E
Sbjct: 56 --YSGNIFING----MEVRKIRNYIRYSTNLPEAYEIGVTVNDIVY---------LYEEL 100
Query: 149 KVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGL 208
K L + + L + I+ +L + LS G+ + L P ++ LDEP +
Sbjct: 101 KGLDRDLFLEMLKALKLGEEILRRKLYK-LSAGQSVLVRTSLALASQPEIVGLDEPFENV 159
Query: 209 DSTMAKKILVSLSKLAEGGRTILMTIHQ 236
D+ A++ ++S + E G+ ++ H+
Sbjct: 160 DA--ARRHVIS-RYIKEYGKEGILVTHE 184
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 173 RLVRGLSGGERKRISIGQELLINP------SLLFLDEPTSGLDSTMAKKILVSLSKLAEG 226
R RGLSGGER ISI + + F+DE S LD+ +KI L +L
Sbjct: 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERL 334
Query: 227 GRTILMTIHQ 236
+ I+ H
Sbjct: 335 NKVIVFITHD 344
>pdb|3C8U|A Chain A, Crystal Structure Of Putative Fructose Transport System
Kinase (Yp_612366.1) From Silicibacter Sp. Tm1040 At
1.95 A Resolution
Length = 208
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 53/127 (41%), Gaps = 30/127 (23%)
Query: 61 PG-ELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQN 119
PG +L+A+ G G GK+TL L LS QG AEV GF N
Sbjct: 20 PGRQLVALSGAPGSGKSTLSNPLAAALS------AQG--------LPAEVVPXDGFHLDN 65
Query: 120 NV-----FYPHLTVAETLVFTALLRLPNSLKREEKVLH---------AEAVINQLGLARC 165
+ P ET F RL ++LK +E+V++ A A ++G C
Sbjct: 66 RLLEPRGLLPRKGAPETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVG-PEC 124
Query: 166 RNSIIGG 172
R +II G
Sbjct: 125 RVAIIEG 131
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 173 RLVRGLSGGERKRISIGQELLINP------SLLFLDEPTSGLDSTMAKKILVSLSKLAEG 226
R RGLSGGER ISI + F+DE S LD+ +KI L +L
Sbjct: 275 RPARGLSGGERALISISLAXSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERL 334
Query: 227 GRTILMTIHQ 236
+ I+ H
Sbjct: 335 NKVIVFITHD 344
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 8/57 (14%)
Query: 29 VEDMLKKVNMLVI--IKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALG 83
+ED+ +++ M ++ ++N D+ K + G V+P +L + GP GCGKT L A+
Sbjct: 15 LEDIREELTMAILAPVRNPDQFKAL-----GLVTPAGVL-LAGPPGCGKTLLAKAVA 65
>pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 174
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 178 LSGGERK------RISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTIL 231
LSGGER R+++ L SLL LDEPT LD +K++ + + + ++
Sbjct: 84 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 143
Query: 232 MTIH 235
+ H
Sbjct: 144 LVSH 147
>pdb|3QKR|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
pdb|3QKS|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
Length = 179
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 178 LSGGERK------RISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTIL 231
LSGGER R+++ L SLL LDEPT LD +K++ + + + ++
Sbjct: 89 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 148
Query: 232 MTIH 235
+ H
Sbjct: 149 LVSH 152
>pdb|1F2T|B Chain B, Crystal Structure Of Atp-free Rad50 Abc-atpase
pdb|1F2U|B Chain B, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|D Chain D, Crystal Structure Of Rad50 Abc-Atpase
Length = 148
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 178 LSGGERK------RISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTIL 231
LSGGER R+++ L SLL LDEPT LD +K++ + + + ++
Sbjct: 58 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 117
Query: 232 MTIH 235
+ H
Sbjct: 118 LVSH 121
>pdb|3O1H|B Chain B, Crystal Structure Of The Tors Sensor Domain - Tort Complex
In The Presence Of Tmao
pdb|3O1I|D Chain D, Crystal Structure Of The Tors Sensor Domain - Tort Complex
In The Absence Of Ligand
pdb|3O1I|C Chain C, Crystal Structure Of The Tors Sensor Domain - Tort Complex
In The Absence Of Ligand
pdb|3O1J|C Chain C, Crystal Structure Of The Tors Sensor Domain - Tort Complex
In The Absence Of Isopropanol
pdb|3O1J|D Chain D, Crystal Structure Of The Tors Sensor Domain - Tort Complex
In The Absence Of Isopropanol
Length = 304
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 46 DEEKMILKGVSG------AVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQG 96
+E+ +LKG G G+ LA P G GKT + LG R G VT G
Sbjct: 101 EEQSTLLKGEVGVDWYWMGYEAGKYLAERHPKGSGKTNIALLLGPRTRGGTKPVTTG 157
>pdb|3QKU|A Chain A, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
pdb|3QKU|B Chain B, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
Length = 359
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 178 LSGGERK------RISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTIL 231
LSGGER R+++ L SLL LDEPT LD +K++ + + + ++
Sbjct: 269 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 328
Query: 232 MTIH 235
+ H
Sbjct: 329 LVSH 332
>pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|B Chain B, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|C Chain C, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|D Chain D, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
Length = 339
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 178 LSGGERK------RISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTIL 231
LSGGER R+++ L SLL LDEPT LD +K++ + + + ++
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 308
Query: 232 MTIH 235
+ H
Sbjct: 309 LVSH 312
>pdb|1VGY|A Chain A, Crystal Structure Of Succinyl Diaminopimelate
Desuccinylase
pdb|1VGY|B Chain B, Crystal Structure Of Succinyl Diaminopimelate
Desuccinylase
Length = 393
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 26/109 (23%)
Query: 39 LVIIKNSDEEKMILKGVSGAV----SPGELLAILGPSGC--GKTTLLTALGGRLSNGKDT 92
+ ++ SDEE L G + V + EL+ C G+ T + LG + NG+
Sbjct: 129 IALLITSDEEGDALDGTTKVVDVLKARDELIDY-----CIVGEPTAVDKLGDXIKNGRRG 183
Query: 93 VTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTVAETLVFT-ALLRL 140
G++T GK Q ++ YPHL + F ALL L
Sbjct: 184 SLSGNLTVKGK--------------QGHIAYPHLAINPVHTFAPALLEL 218
>pdb|1US8|B Chain B, The Rad50 Signature Motif: Essential To Atp Binding And
Biological Function
Length = 144
Score = 28.9 bits (63), Expect = 9.4, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 178 LSGGERK------RISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTIL 231
L GGER R+++ L SLL LDEPT LD +K++ + + + ++
Sbjct: 54 LRGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 113
Query: 232 MTIH 235
+ H
Sbjct: 114 LVSH 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,479,128
Number of Sequences: 62578
Number of extensions: 665897
Number of successful extensions: 1989
Number of sequences better than 100.0: 121
Number of HSP's better than 100.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1733
Number of HSP's gapped (non-prelim): 173
length of query: 604
length of database: 14,973,337
effective HSP length: 104
effective length of query: 500
effective length of database: 8,465,225
effective search space: 4232612500
effective search space used: 4232612500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)