Query 046786
Match_columns 604
No_of_seqs 374 out of 3539
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 04:28:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046786.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046786hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03211 ABC transporter G-25; 100.0 1E-106 2E-111 920.0 65.2 550 48-604 80-643 (659)
2 KOG0061 Transporter, ABC super 100.0 6E-107 1E-111 913.0 56.3 559 33-604 26-593 (613)
3 TIGR00955 3a01204 The Eye Pigm 100.0 4E-102 8E-107 881.4 62.1 552 46-603 35-597 (617)
4 TIGR00956 3a01205 Pleiotropic 100.0 1.2E-98 3E-103 912.2 57.2 553 47-603 72-678 (1394)
5 PLN03140 ABC transporter G fam 100.0 2.2E-96 5E-101 889.9 62.3 555 32-603 867-1450(1470)
6 PLN03140 ABC transporter G fam 100.0 9.5E-97 2E-101 893.0 55.0 545 48-603 177-773 (1470)
7 TIGR00956 3a01205 Pleiotropic 100.0 6.5E-96 1E-100 888.4 61.0 559 32-603 759-1375(1394)
8 KOG0065 Pleiotropic drug resis 100.0 6.5E-98 1E-102 853.4 37.8 533 33-578 788-1339(1391)
9 KOG0065 Pleiotropic drug resis 100.0 1.6E-89 3.5E-94 784.5 43.2 550 47-603 126-714 (1391)
10 COG1126 GlnQ ABC-type polar am 100.0 3.7E-53 7.9E-58 404.4 23.7 216 33-266 3-223 (240)
11 COG1135 AbcC ABC-type metal io 100.0 4.8E-50 1E-54 401.1 22.5 220 33-267 2-230 (339)
12 COG1131 CcmA ABC-type multidru 100.0 3.9E-49 8.5E-54 408.3 25.9 212 48-274 17-232 (293)
13 COG1125 OpuBA ABC-type proline 100.0 2.6E-49 5.6E-54 385.0 22.4 219 33-268 2-225 (309)
14 COG1136 SalX ABC-type antimicr 100.0 7.6E-49 1.6E-53 384.8 25.3 208 34-256 3-219 (226)
15 COG1127 Ttg2A ABC-type transpo 100.0 4.5E-49 9.8E-54 381.7 22.5 219 32-268 8-235 (263)
16 COG1120 FepC ABC-type cobalami 100.0 1.2E-48 2.7E-53 390.5 21.3 219 33-267 3-227 (258)
17 COG3638 ABC-type phosphate/pho 100.0 3.8E-48 8.1E-53 374.4 19.5 223 32-269 3-238 (258)
18 COG3839 MalK ABC-type sugar tr 100.0 1.1E-47 2.3E-52 397.6 23.8 203 51-268 18-223 (338)
19 COG1116 TauB ABC-type nitrate/ 100.0 9.7E-48 2.1E-52 377.4 21.8 192 47-254 14-206 (248)
20 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.6E-47 3.5E-52 380.6 22.7 219 32-268 4-227 (254)
21 COG3842 PotA ABC-type spermidi 100.0 7.4E-48 1.6E-52 400.8 21.0 224 44-289 13-239 (352)
22 COG4555 NatA ABC-type Na+ tran 100.0 1.4E-47 3E-52 361.2 17.3 206 49-269 15-223 (245)
23 COG1118 CysA ABC-type sulfate/ 100.0 7.2E-47 1.6E-51 377.3 20.5 210 46-268 12-227 (345)
24 TIGR02314 ABC_MetN D-methionin 100.0 8.3E-46 1.8E-50 390.6 28.0 220 33-267 2-229 (343)
25 COG2884 FtsE Predicted ATPase 100.0 2.4E-46 5.3E-51 350.0 20.7 202 46-262 12-220 (223)
26 PRK13537 nodulation ABC transp 100.0 1.8E-45 3.8E-50 384.0 27.6 218 32-268 7-227 (306)
27 PRK11650 ugpC glycerol-3-phosp 100.0 2.4E-45 5.2E-50 389.8 27.5 217 33-267 4-223 (356)
28 TIGR03265 PhnT2 putative 2-ami 100.0 4.5E-45 9.7E-50 387.3 27.7 217 33-268 5-224 (353)
29 PRK11432 fbpC ferric transport 100.0 7E-45 1.5E-49 385.3 27.7 217 32-267 6-225 (351)
30 PRK13536 nodulation factor exp 100.0 9.4E-45 2E-49 383.0 27.8 219 32-269 41-262 (340)
31 COG1117 PstB ABC-type phosphat 100.0 1.3E-45 2.7E-50 351.1 18.7 235 33-287 8-248 (253)
32 TIGR01188 drrA daunorubicin re 100.0 6.3E-45 1.4E-49 379.6 25.9 208 47-269 4-214 (302)
33 cd03261 ABC_Org_Solvent_Resist 100.0 1.6E-44 3.4E-49 363.3 26.8 205 48-266 12-224 (235)
34 COG1124 DppF ABC-type dipeptid 100.0 3.8E-45 8.2E-50 356.0 21.4 222 32-269 3-232 (252)
35 TIGR03258 PhnT 2-aminoethylpho 100.0 1.5E-44 3.2E-49 384.0 26.5 215 34-267 7-227 (362)
36 PRK10851 sulfate/thiosulfate t 100.0 2.4E-44 5.2E-49 381.7 27.9 219 33-267 3-225 (353)
37 PRK09452 potA putrescine/sperm 100.0 2.3E-44 4.9E-49 384.0 27.7 217 32-267 14-233 (375)
38 COG1122 CbiO ABC-type cobalt t 100.0 1E-44 2.3E-49 361.6 23.2 217 33-268 4-228 (235)
39 TIGR01186 proV glycine betaine 100.0 2.3E-44 5E-49 381.8 26.7 207 46-267 3-218 (363)
40 PRK11153 metN DL-methionine tr 100.0 3.7E-44 8E-49 379.7 28.2 220 33-267 2-229 (343)
41 PRK11607 potG putrescine trans 100.0 3E-44 6.6E-49 383.6 27.0 218 32-268 19-239 (377)
42 TIGR01288 nodI ATP-binding ABC 100.0 8.1E-44 1.8E-48 371.4 27.5 217 33-268 5-224 (303)
43 PRK13643 cbiO cobalt transport 100.0 1.3E-43 2.9E-48 367.2 28.6 239 33-287 2-255 (288)
44 TIGR00960 3a0501s02 Type II (G 100.0 5.8E-44 1.3E-48 354.6 24.9 208 33-257 2-216 (216)
45 COG1137 YhbG ABC-type (unclass 100.0 2E-45 4.4E-50 346.1 13.5 212 43-267 11-227 (243)
46 cd03265 ABC_DrrA DrrA is the A 100.0 1.1E-43 2.3E-48 353.8 26.5 203 48-265 12-218 (220)
47 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.4E-43 3E-48 352.9 26.9 199 49-263 17-218 (220)
48 PRK11000 maltose/maltodextrin 100.0 1E-43 2.3E-48 379.4 27.8 216 33-267 4-222 (369)
49 cd03258 ABC_MetN_methionine_tr 100.0 1.1E-43 2.3E-48 356.7 26.2 219 33-266 2-228 (233)
50 cd03259 ABC_Carb_Solutes_like 100.0 9.8E-44 2.1E-48 352.2 25.3 199 48-261 12-213 (213)
51 cd03266 ABC_NatA_sodium_export 100.0 1.1E-43 2.4E-48 353.0 25.2 214 33-261 2-218 (218)
52 cd03219 ABC_Mj1267_LivG_branch 100.0 2E-43 4.3E-48 355.3 26.6 207 48-266 12-230 (236)
53 cd03296 ABC_CysA_sulfate_impor 100.0 1.9E-43 4.1E-48 356.4 26.4 218 33-266 3-224 (239)
54 cd03269 ABC_putative_ATPase Th 100.0 1.8E-43 3.8E-48 349.6 25.5 199 48-261 12-210 (210)
55 PRK13637 cbiO cobalt transport 100.0 4.2E-43 9E-48 363.3 28.9 232 33-279 3-248 (287)
56 COG3840 ThiQ ABC-type thiamine 100.0 3.6E-44 7.8E-49 332.9 18.0 200 53-267 16-218 (231)
57 cd03218 ABC_YhbG The ABC trans 100.0 3.3E-43 7.2E-48 352.8 26.5 204 48-266 12-220 (232)
58 TIGR03522 GldA_ABC_ATP gliding 100.0 2.5E-43 5.4E-48 367.3 26.2 215 34-268 4-221 (301)
59 cd03301 ABC_MalK_N The N-termi 100.0 3.7E-43 7.9E-48 348.0 25.8 199 48-261 12-213 (213)
60 cd03263 ABC_subfamily_A The AB 100.0 3.6E-43 7.7E-48 349.8 25.8 202 49-266 15-219 (220)
61 PRK13634 cbiO cobalt transport 100.0 5.7E-43 1.2E-47 362.8 28.0 231 33-279 3-249 (290)
62 PRK09536 btuD corrinoid ABC tr 100.0 2.5E-43 5.4E-48 378.3 25.9 219 32-266 3-226 (402)
63 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 3.4E-43 7.3E-48 349.5 24.6 193 49-257 17-218 (218)
64 PRK09493 glnQ glutamine ABC tr 100.0 6.5E-43 1.4E-47 352.6 27.0 216 34-267 3-224 (240)
65 cd03256 ABC_PhnC_transporter A 100.0 4.3E-43 9.4E-48 353.9 25.5 207 49-267 14-233 (241)
66 PRK13631 cbiO cobalt transport 100.0 6.3E-43 1.4E-47 366.6 27.6 232 32-279 21-279 (320)
67 PRK11831 putative ABC transpor 100.0 6.5E-43 1.4E-47 358.7 26.9 218 31-266 6-231 (269)
68 PRK11264 putative amino-acid A 100.0 7.3E-43 1.6E-47 354.3 27.0 217 32-266 3-231 (250)
69 cd03234 ABCG_White The White s 100.0 7.7E-43 1.7E-47 349.1 26.6 220 34-261 5-226 (226)
70 COG4152 ABC-type uncharacteriz 100.0 8.4E-44 1.8E-48 344.4 18.8 215 43-272 9-223 (300)
71 cd03295 ABC_OpuCA_Osmoprotecti 100.0 7.3E-43 1.6E-47 352.8 26.7 203 49-266 14-223 (242)
72 PRK15079 oligopeptide ABC tran 100.0 6.7E-43 1.5E-47 367.8 27.4 224 31-267 7-250 (331)
73 cd03260 ABC_PstB_phosphate_tra 100.0 4.7E-43 1E-47 350.7 24.7 209 48-265 12-226 (227)
74 PRK13647 cbiO cobalt transport 100.0 1.2E-42 2.5E-47 357.7 28.1 228 33-278 5-239 (274)
75 PRK13650 cbiO cobalt transport 100.0 9.6E-43 2.1E-47 359.2 27.5 230 32-278 4-242 (279)
76 PRK11629 lolD lipoprotein tran 100.0 1.2E-42 2.6E-47 349.3 27.2 216 32-263 5-229 (233)
77 PRK13651 cobalt transporter AT 100.0 1.2E-42 2.5E-47 362.4 28.0 231 33-279 3-268 (305)
78 COG0411 LivG ABC-type branched 100.0 1.1E-43 2.4E-48 346.1 18.9 213 44-268 12-239 (250)
79 cd03294 ABC_Pro_Gly_Bertaine T 100.0 6.8E-43 1.5E-47 358.5 25.7 207 46-267 34-249 (269)
80 TIGR02315 ABC_phnC phosphonate 100.0 4.3E-43 9.3E-48 354.4 23.7 207 48-266 14-233 (243)
81 TIGR02673 FtsE cell division A 100.0 9E-43 1.9E-47 345.4 24.7 206 33-256 2-214 (214)
82 cd03224 ABC_TM1139_LivF_branch 100.0 7.9E-43 1.7E-47 347.7 24.0 203 48-267 12-220 (222)
83 cd03292 ABC_FtsE_transporter F 100.0 1.6E-42 3.4E-47 343.5 25.1 194 49-257 14-214 (214)
84 cd03268 ABC_BcrA_bacitracin_re 100.0 1.3E-42 2.8E-47 342.9 24.4 195 48-261 12-208 (208)
85 PRK10619 histidine/lysine/argi 100.0 3.2E-42 6.9E-47 351.2 27.8 218 32-267 5-240 (257)
86 PRK13646 cbiO cobalt transport 100.0 2E-42 4.4E-47 358.1 26.7 219 33-267 3-234 (286)
87 PRK13641 cbiO cobalt transport 100.0 2.8E-42 6.1E-47 357.2 27.3 219 33-267 3-233 (287)
88 PRK10895 lipopolysaccharide AB 100.0 2.1E-42 4.6E-47 349.1 25.5 217 33-267 4-225 (241)
89 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 4.2E-42 9E-47 346.0 27.5 205 48-268 13-221 (236)
90 PRK11022 dppD dipeptide transp 100.0 3.3E-42 7.2E-47 362.2 27.8 228 33-267 4-242 (326)
91 TIGR02211 LolD_lipo_ex lipopro 100.0 2.8E-42 6.1E-47 343.5 25.7 209 34-258 3-220 (221)
92 PRK11308 dppF dipeptide transp 100.0 4E-42 8.6E-47 361.5 27.9 223 32-268 5-244 (327)
93 TIGR00972 3a0107s01c2 phosphat 100.0 4.5E-42 9.8E-47 348.1 27.3 218 34-266 3-230 (247)
94 PRK09473 oppD oligopeptide tra 100.0 3.5E-42 7.6E-47 362.4 27.5 230 30-267 10-250 (330)
95 COG0444 DppD ABC-type dipeptid 100.0 2.2E-42 4.7E-47 350.6 24.5 229 33-267 2-242 (316)
96 cd03226 ABC_cobalt_CbiO_domain 100.0 1.5E-42 3.2E-47 341.8 22.7 191 49-258 13-205 (205)
97 PRK13635 cbiO cobalt transport 100.0 5.4E-42 1.2E-46 353.6 27.8 229 32-278 5-242 (279)
98 PRK13644 cbiO cobalt transport 100.0 5.8E-42 1.3E-46 352.5 27.9 215 34-267 3-223 (274)
99 cd03257 ABC_NikE_OppD_transpor 100.0 3.5E-42 7.6E-47 344.3 25.5 198 50-261 19-228 (228)
100 PRK11614 livF leucine/isoleuci 100.0 2.9E-42 6.3E-47 347.3 24.7 215 32-267 5-225 (237)
101 PRK10070 glycine betaine trans 100.0 3.2E-42 6.9E-47 369.5 26.5 205 48-267 40-253 (400)
102 PRK13636 cbiO cobalt transport 100.0 5.6E-42 1.2E-46 354.2 27.3 229 32-278 5-244 (283)
103 PRK10908 cell division protein 100.0 4.5E-42 9.9E-47 342.5 25.7 208 33-258 2-216 (222)
104 PRK13649 cbiO cobalt transport 100.0 8.4E-42 1.8E-46 352.5 28.5 219 33-267 3-233 (280)
105 PRK11124 artP arginine transpo 100.0 6.1E-42 1.3E-46 346.0 26.8 215 33-266 3-228 (242)
106 COG0410 LivF ABC-type branched 100.0 1.8E-42 4E-47 335.1 21.7 216 32-267 3-225 (237)
107 PRK14247 phosphate ABC transpo 100.0 9.3E-42 2E-46 346.3 27.8 226 33-267 4-233 (250)
108 PRK13638 cbiO cobalt transport 100.0 7.6E-42 1.6E-46 351.2 27.4 216 33-267 2-224 (271)
109 PRK11248 tauB taurine transpor 100.0 7.1E-42 1.5E-46 348.3 26.9 212 33-264 2-216 (255)
110 PRK14267 phosphate ABC transpo 100.0 1E-41 2.2E-46 346.7 27.7 227 32-267 4-236 (253)
111 TIGR03415 ABC_choXWV_ATP choli 100.0 4.4E-42 9.4E-47 366.0 26.1 207 46-267 34-253 (382)
112 PRK15093 antimicrobial peptide 100.0 9.1E-42 2E-46 359.7 28.2 231 32-267 3-247 (330)
113 cd03264 ABC_drug_resistance_li 100.0 4.8E-42 1E-46 339.6 24.5 197 48-261 12-211 (211)
114 PRK13633 cobalt transporter AT 100.0 9E-42 1.9E-46 352.2 27.3 231 32-279 4-247 (280)
115 PRK11300 livG leucine/isoleuci 100.0 7E-42 1.5E-46 348.1 26.1 219 32-266 5-241 (255)
116 cd03225 ABC_cobalt_CbiO_domain 100.0 3.8E-42 8.1E-47 340.2 23.4 193 49-256 14-211 (211)
117 TIGR03005 ectoine_ehuA ectoine 100.0 1E-41 2.3E-46 346.4 27.2 205 48-266 12-234 (252)
118 TIGR02769 nickel_nikE nickel i 100.0 8.8E-42 1.9E-46 349.6 26.7 221 33-267 3-239 (265)
119 COG4175 ProV ABC-type proline/ 100.0 8.6E-43 1.9E-47 348.3 18.6 205 49-268 41-254 (386)
120 TIGR01257 rim_protein retinal- 100.0 1.2E-39 2.6E-44 398.2 49.9 222 32-271 928-1152(2272)
121 PRK13548 hmuV hemin importer A 100.0 7.7E-42 1.7E-46 348.6 25.9 216 33-267 3-229 (258)
122 cd03262 ABC_HisP_GlnQ_permease 100.0 6.9E-42 1.5E-46 338.7 24.8 196 48-257 12-213 (213)
123 TIGR03411 urea_trans_UrtD urea 100.0 1E-41 2.3E-46 344.2 26.2 217 33-266 3-229 (242)
124 PRK14273 phosphate ABC transpo 100.0 1.3E-41 2.8E-46 346.1 27.0 221 32-267 7-237 (254)
125 TIGR02142 modC_ABC molybdenum 100.0 7.8E-42 1.7E-46 363.5 26.1 197 54-267 15-220 (354)
126 cd03235 ABC_Metallic_Cations A 100.0 3.3E-42 7.2E-47 341.2 21.7 199 49-261 12-213 (213)
127 PRK10584 putative ABC transpor 100.0 1.3E-41 2.8E-46 340.5 26.0 212 32-259 6-226 (228)
128 PRK13652 cbiO cobalt transport 100.0 2.4E-41 5.2E-46 348.5 28.7 217 33-267 4-226 (277)
129 PRK14268 phosphate ABC transpo 100.0 1.5E-41 3.1E-46 346.6 26.6 223 32-266 12-240 (258)
130 PRK13648 cbiO cobalt transport 100.0 2.2E-41 4.7E-46 347.4 27.8 229 32-278 7-244 (269)
131 PRK13639 cbiO cobalt transport 100.0 2.9E-41 6.3E-46 347.5 28.7 226 34-277 3-238 (275)
132 TIGR01978 sufC FeS assembly AT 100.0 2E-41 4.2E-46 342.2 26.8 210 48-267 12-233 (243)
133 PRK11231 fecE iron-dicitrate t 100.0 1E-41 2.2E-46 347.1 24.9 218 33-266 3-225 (255)
134 PRK11247 ssuB aliphatic sulfon 100.0 1.3E-41 2.8E-46 346.4 25.1 206 33-264 13-219 (257)
135 PRK11144 modC molybdate transp 100.0 1.3E-41 2.8E-46 361.4 25.8 193 54-267 16-217 (352)
136 PRK13632 cbiO cobalt transport 100.0 1.6E-41 3.5E-46 348.7 25.5 218 32-267 7-230 (271)
137 PRK15112 antimicrobial peptide 100.0 2.1E-41 4.5E-46 347.2 26.2 222 32-267 4-238 (267)
138 PRK14242 phosphate transporter 100.0 3.1E-41 6.6E-46 343.1 27.2 223 33-266 7-235 (253)
139 PRK10253 iron-enterobactin tra 100.0 1.4E-41 3E-46 348.1 24.8 220 32-267 7-232 (265)
140 TIGR03740 galliderm_ABC gallid 100.0 1.7E-41 3.7E-46 338.6 24.5 198 48-264 12-209 (223)
141 PRK13640 cbiO cobalt transport 100.0 3.4E-41 7.5E-46 348.2 27.5 218 32-267 5-231 (282)
142 PRK10575 iron-hydroxamate tran 100.0 1.6E-41 3.4E-46 347.7 24.6 219 32-266 11-235 (265)
143 cd03267 ABC_NatA_like Similar 100.0 2.2E-41 4.7E-46 340.9 24.8 201 46-261 31-236 (236)
144 PRK14235 phosphate transporter 100.0 4.5E-41 9.7E-46 344.7 27.5 225 32-266 19-249 (267)
145 PRK14241 phosphate transporter 100.0 4.9E-41 1.1E-45 342.7 27.6 225 33-267 5-241 (258)
146 TIGR01184 ntrCD nitrate transp 100.0 1.5E-41 3.2E-46 340.7 23.2 200 52-265 1-201 (230)
147 PRK14245 phosphate ABC transpo 100.0 4.8E-41 1E-45 341.1 27.1 221 33-267 4-233 (250)
148 PRK14256 phosphate ABC transpo 100.0 5.7E-41 1.2E-45 341.0 27.5 224 33-266 5-234 (252)
149 TIGR03873 F420-0_ABC_ATP propo 100.0 3.2E-41 6.9E-46 343.7 25.7 207 48-266 13-224 (256)
150 PRK13645 cbiO cobalt transport 100.0 4E-41 8.7E-46 348.9 26.9 219 33-267 7-239 (289)
151 COG4559 ABC-type hemin transpo 100.0 7.5E-42 1.6E-46 324.8 19.5 217 32-267 1-229 (259)
152 PRK10744 pstB phosphate transp 100.0 5.6E-41 1.2E-45 342.7 27.2 225 32-267 13-243 (260)
153 cd03298 ABC_ThiQ_thiamine_tran 100.0 2.8E-41 6E-46 334.1 24.2 193 54-261 16-211 (211)
154 TIGR03410 urea_trans_UrtE urea 100.0 3.2E-41 6.9E-46 338.1 24.8 201 48-266 12-219 (230)
155 PRK09984 phosphonate/organopho 100.0 3.4E-41 7.4E-46 344.6 25.4 222 32-266 4-240 (262)
156 PRK10771 thiQ thiamine transpo 100.0 4.3E-41 9.3E-46 337.7 25.1 200 53-267 16-218 (232)
157 PRK14269 phosphate ABC transpo 100.0 6.8E-41 1.5E-45 339.3 26.8 223 33-267 3-229 (246)
158 PRK13642 cbiO cobalt transport 100.0 7.6E-41 1.7E-45 344.8 27.5 219 32-267 4-228 (277)
159 cd03297 ABC_ModC_molybdenum_tr 100.0 4.4E-41 9.6E-46 333.5 24.7 197 45-261 9-214 (214)
160 cd03300 ABC_PotA_N PotA is an 100.0 1E-40 2.2E-45 335.2 27.0 205 48-267 12-219 (232)
161 PRK14237 phosphate transporter 100.0 1E-40 2.2E-45 342.1 27.6 225 32-267 20-250 (267)
162 COG4181 Predicted ABC-type tra 100.0 8.8E-42 1.9E-46 313.9 17.5 211 33-259 7-226 (228)
163 TIGR00968 3a0106s01 sulfate AB 100.0 9.2E-41 2E-45 336.5 26.7 205 48-267 12-219 (237)
164 PRK14250 phosphate ABC transpo 100.0 5.1E-41 1.1E-45 339.2 24.7 211 33-267 4-220 (241)
165 PRK14274 phosphate ABC transpo 100.0 1.1E-40 2.5E-45 340.2 27.5 225 32-267 12-242 (259)
166 TIGR02770 nickel_nikD nickel i 100.0 5E-41 1.1E-45 336.9 24.4 206 51-267 1-214 (230)
167 TIGR01277 thiQ thiamine ABC tr 100.0 7.9E-41 1.7E-45 331.5 25.5 197 51-262 13-212 (213)
168 cd03299 ABC_ModC_like Archeal 100.0 1.3E-40 2.8E-45 335.0 27.3 202 51-267 14-218 (235)
169 PRK14270 phosphate ABC transpo 100.0 1.4E-40 3E-45 337.9 27.3 224 33-267 5-234 (251)
170 PRK14262 phosphate ABC transpo 100.0 1.5E-40 3.2E-45 337.5 27.2 225 32-267 3-233 (250)
171 PRK14244 phosphate ABC transpo 100.0 9.6E-41 2.1E-45 339.1 25.8 213 48-266 17-235 (251)
172 cd03233 ABC_PDR_domain1 The pl 100.0 8.3E-41 1.8E-45 328.8 23.9 195 33-261 4-202 (202)
173 PRK14272 phosphate ABC transpo 100.0 1.9E-40 4.2E-45 337.0 27.4 226 32-267 4-235 (252)
174 COG1123 ATPase components of v 100.0 8.8E-41 1.9E-45 361.5 26.1 231 32-270 5-246 (539)
175 PRK14248 phosphate ABC transpo 100.0 2E-40 4.3E-45 340.1 27.3 227 30-267 19-251 (268)
176 PRK14253 phosphate ABC transpo 100.0 1.8E-40 3.9E-45 336.7 26.6 223 33-266 4-231 (249)
177 PRK13547 hmuV hemin importer A 100.0 9.8E-41 2.1E-45 342.7 24.9 223 33-266 2-242 (272)
178 PRK14240 phosphate transporter 100.0 2.5E-40 5.4E-45 335.8 27.6 223 33-266 4-232 (250)
179 PRK13549 xylose transporter AT 100.0 6.7E-41 1.4E-45 373.1 25.5 221 32-266 5-230 (506)
180 PRK14239 phosphate transporter 100.0 2.3E-40 5E-45 336.4 27.2 225 32-267 5-235 (252)
181 PRK14259 phosphate ABC transpo 100.0 1.6E-40 3.6E-45 340.9 26.0 224 32-268 13-253 (269)
182 TIGR02982 heterocyst_DevA ABC 100.0 1.4E-40 3E-45 331.4 24.7 207 36-257 5-219 (220)
183 TIGR03608 L_ocin_972_ABC putat 100.0 1.1E-40 2.3E-45 328.5 23.4 189 48-251 10-206 (206)
184 PRK14249 phosphate ABC transpo 100.0 2.9E-40 6.4E-45 335.6 27.3 223 33-266 5-233 (251)
185 PRK11701 phnK phosphonate C-P 100.0 2.5E-40 5.4E-45 337.5 26.5 218 32-267 6-240 (258)
186 PRK10762 D-ribose transporter 100.0 9.6E-41 2.1E-45 371.4 25.4 219 32-266 4-228 (501)
187 cd03232 ABC_PDR_domain2 The pl 100.0 1.7E-40 3.6E-45 324.1 24.0 188 33-261 4-192 (192)
188 PRK14236 phosphate transporter 100.0 3.6E-40 7.9E-45 338.9 27.2 224 32-266 25-254 (272)
189 COG4598 HisP ABC-type histidin 100.0 1.9E-41 4.2E-46 313.7 15.8 210 44-267 14-240 (256)
190 PRK09700 D-allose transporter 100.0 1.1E-40 2.3E-45 371.9 24.9 219 32-266 5-232 (510)
191 cd03252 ABCC_Hemolysin The ABC 100.0 6.7E-41 1.5E-45 337.3 21.0 199 49-267 15-224 (237)
192 PRK14271 phosphate ABC transpo 100.0 4.8E-40 1E-44 338.5 27.4 225 32-267 21-250 (276)
193 PRK14258 phosphate ABC transpo 100.0 5.6E-40 1.2E-44 335.5 27.7 226 33-268 8-245 (261)
194 PRK10418 nikD nickel transport 100.0 3.1E-40 6.7E-45 336.1 25.6 218 32-267 4-229 (254)
195 PRK14261 phosphate ABC transpo 100.0 5.1E-40 1.1E-44 334.2 26.9 225 32-267 6-236 (253)
196 PRK14263 phosphate ABC transpo 100.0 4.7E-40 1E-44 336.0 26.3 213 47-267 19-244 (261)
197 PRK14257 phosphate ABC transpo 100.0 6.6E-40 1.4E-44 344.8 27.9 226 32-267 80-312 (329)
198 PRK14260 phosphate ABC transpo 100.0 5.9E-40 1.3E-44 334.9 26.4 225 32-267 7-242 (259)
199 PRK14251 phosphate ABC transpo 100.0 7.6E-40 1.7E-44 332.5 27.0 224 32-266 4-233 (251)
200 PRK15439 autoinducer 2 ABC tra 100.0 2.7E-40 5.9E-45 368.4 25.4 212 32-266 11-227 (510)
201 PRK14255 phosphate ABC transpo 100.0 1.2E-39 2.6E-44 331.2 27.9 225 32-267 5-235 (252)
202 PRK10419 nikE nickel transport 100.0 5.9E-40 1.3E-44 336.6 25.9 221 33-267 4-240 (268)
203 COG2274 SunT ABC-type bacterio 100.0 4.5E-41 9.8E-46 381.0 18.3 217 33-269 472-697 (709)
204 cd03251 ABCC_MsbA MsbA is an e 100.0 2.2E-40 4.9E-45 332.7 21.1 201 49-269 15-226 (234)
205 PRK10261 glutathione transport 100.0 7.2E-40 1.6E-44 372.6 27.9 222 32-267 313-552 (623)
206 PRK03695 vitamin B12-transport 100.0 6.1E-40 1.3E-44 332.7 24.4 199 51-266 11-220 (248)
207 PRK14254 phosphate ABC transpo 100.0 1.5E-39 3.3E-44 336.3 27.5 222 32-266 39-267 (285)
208 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 2E-40 4.4E-45 334.0 20.4 201 49-269 16-227 (238)
209 TIGR01257 rim_protein retinal- 100.0 6.3E-40 1.4E-44 400.6 28.7 224 31-271 1936-2162(2272)
210 COG4525 TauB ABC-type taurine 100.0 3.5E-40 7.6E-45 309.3 20.4 206 49-269 18-225 (259)
211 TIGR02323 CP_lyasePhnK phospho 100.0 1.2E-39 2.6E-44 331.4 26.1 218 32-267 3-237 (253)
212 PRK14238 phosphate transporter 100.0 1.8E-39 4E-44 333.5 27.1 224 32-266 24-253 (271)
213 PRK10982 galactose/methyl gala 100.0 5.7E-40 1.2E-44 364.4 25.2 207 48-266 10-221 (491)
214 PRK15134 microcin C ABC transp 100.0 1.1E-39 2.4E-44 365.3 27.6 227 32-267 5-245 (529)
215 PRK14275 phosphate ABC transpo 100.0 1.5E-39 3.3E-44 336.5 26.6 220 33-267 40-269 (286)
216 CHL00131 ycf16 sulfate ABC tra 100.0 2E-39 4.3E-44 329.5 27.0 221 32-266 7-239 (252)
217 PRK10261 glutathione transport 100.0 6.6E-40 1.4E-44 372.9 25.9 222 32-267 12-257 (623)
218 TIGR01166 cbiO cobalt transpor 100.0 5.9E-40 1.3E-44 319.5 21.9 177 48-238 4-188 (190)
219 cd03213 ABCG_EPDR ABCG transpo 100.0 1.7E-39 3.7E-44 317.5 24.4 170 49-261 22-194 (194)
220 PRK14265 phosphate ABC transpo 100.0 2.4E-39 5.3E-44 333.0 26.7 223 32-267 20-257 (274)
221 PRK14266 phosphate ABC transpo 100.0 2.6E-39 5.7E-44 328.3 26.6 224 33-267 4-233 (250)
222 TIGR02633 xylG D-xylose ABC tr 100.0 1.2E-39 2.6E-44 362.7 26.3 219 34-265 3-227 (500)
223 PRK11288 araG L-arabinose tran 100.0 1.4E-39 3E-44 362.1 26.6 216 32-263 4-224 (501)
224 PRK14243 phosphate transporter 100.0 2E-39 4.3E-44 332.0 25.6 223 32-267 10-247 (264)
225 PRK13538 cytochrome c biogenes 100.0 1.4E-39 3E-44 320.6 23.5 197 34-251 3-202 (204)
226 PRK15056 manganese/iron transp 100.0 1.9E-39 4.1E-44 333.5 24.5 218 33-266 7-228 (272)
227 PRK15134 microcin C ABC transp 100.0 1.9E-39 4.1E-44 363.4 26.2 222 32-267 275-514 (529)
228 PRK14246 phosphate ABC transpo 100.0 4.8E-39 1E-43 327.8 26.8 222 31-267 9-240 (257)
229 PRK14264 phosphate ABC transpo 100.0 3.7E-39 8.1E-44 336.5 26.6 227 32-267 45-288 (305)
230 cd03254 ABCC_Glucan_exporter_l 100.0 6.1E-40 1.3E-44 328.5 19.9 200 49-268 16-226 (229)
231 TIGR03269 met_CoM_red_A2 methy 100.0 2.2E-39 4.9E-44 362.1 26.6 220 32-267 279-516 (520)
232 TIGR03269 met_CoM_red_A2 methy 100.0 3.6E-39 7.8E-44 360.4 27.5 219 35-270 3-260 (520)
233 PRK09580 sufC cysteine desulfu 100.0 6.1E-39 1.3E-43 325.1 26.6 228 33-275 2-241 (248)
234 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 3E-39 6.6E-44 322.7 23.8 194 45-261 31-224 (224)
235 COG1123 ATPase components of v 100.0 1.9E-39 4.2E-44 351.1 24.0 223 32-267 280-518 (539)
236 PRK10247 putative ABC transpor 100.0 2.3E-39 5.1E-44 323.8 22.2 209 32-262 7-221 (225)
237 COG4604 CeuD ABC-type enteroch 100.0 1.2E-40 2.7E-45 313.0 12.0 209 44-267 9-224 (252)
238 PRK11174 cysteine/glutathione 100.0 1.1E-39 2.4E-44 369.9 22.3 199 48-267 362-571 (588)
239 cd03245 ABCC_bacteriocin_expor 100.0 1.7E-39 3.6E-44 323.4 20.9 194 49-261 17-220 (220)
240 PRK13549 xylose transporter AT 100.0 1.9E-39 4.1E-44 361.4 23.7 208 48-266 274-492 (506)
241 PRK13543 cytochrome c biogenes 100.0 3.3E-39 7.1E-44 320.3 22.8 199 32-251 11-210 (214)
242 cd03253 ABCC_ATM1_transporter 100.0 1.9E-39 4.1E-44 326.4 21.2 199 49-267 14-223 (236)
243 cd03231 ABC_CcmA_heme_exporter 100.0 4.1E-39 8.9E-44 316.5 22.9 184 48-251 12-198 (201)
244 COG4988 CydD ABC-type transpor 100.0 2.1E-39 4.4E-44 349.5 22.6 200 48-267 333-542 (559)
245 TIGR02324 CP_lyasePhnL phospho 100.0 6E-39 1.3E-43 320.4 24.3 205 33-251 2-222 (224)
246 KOG0058 Peptide exporter, ABC 100.0 4.2E-40 9.1E-45 360.9 16.7 221 29-268 462-691 (716)
247 PRK11176 lipid transporter ATP 100.0 1.8E-39 3.8E-44 367.8 22.4 214 33-267 342-566 (582)
248 PRK14252 phosphate ABC transpo 100.0 1.4E-38 3E-43 325.9 26.8 223 33-267 17-248 (265)
249 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 2.2E-39 4.8E-44 373.5 23.4 210 33-267 452-672 (686)
250 PRK13546 teichoic acids export 100.0 3.1E-38 6.7E-43 322.7 28.1 198 47-268 35-232 (264)
251 COG1132 MdlB ABC-type multidru 100.0 1.2E-39 2.5E-44 368.1 19.2 215 33-268 329-552 (567)
252 cd03230 ABC_DR_subfamily_A Thi 100.0 9.1E-39 2E-43 306.7 22.3 158 49-257 13-173 (173)
253 KOG0057 Mitochondrial Fe/S clu 100.0 1.4E-39 3.1E-44 345.8 17.9 212 33-268 352-574 (591)
254 PRK10790 putative multidrug tr 100.0 7.9E-39 1.7E-43 363.2 25.3 211 33-267 341-562 (592)
255 cd03217 ABC_FeS_Assembly ABC-t 100.0 1.2E-38 2.6E-43 313.0 23.2 182 48-274 12-199 (200)
256 cd03248 ABCC_TAP TAP, the Tran 100.0 1.6E-39 3.5E-44 324.9 17.3 210 29-257 8-226 (226)
257 TIGR01189 ccmA heme ABC export 100.0 1.1E-38 2.5E-43 312.5 22.9 182 48-249 12-196 (198)
258 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 3.1E-39 6.7E-44 373.8 21.6 212 33-268 478-700 (710)
259 COG4148 ModC ABC-type molybdat 100.0 8.6E-40 1.9E-44 321.8 14.3 195 53-268 15-218 (352)
260 PRK09700 D-allose transporter 100.0 7.2E-39 1.6E-43 357.2 23.2 202 50-263 277-493 (510)
261 cd03215 ABC_Carb_Monos_II This 100.0 9.7E-39 2.1E-43 309.0 20.9 160 51-257 15-182 (182)
262 PRK09544 znuC high-affinity zi 100.0 1.5E-38 3.2E-43 323.1 23.2 202 32-267 4-208 (251)
263 TIGR03771 anch_rpt_ABC anchore 100.0 1.1E-38 2.3E-43 318.6 21.5 197 57-267 1-200 (223)
264 PRK11160 cysteine/glutathione 100.0 7.3E-39 1.6E-43 361.8 22.6 213 33-267 339-561 (574)
265 PRK13539 cytochrome c biogenes 100.0 1.9E-38 4.1E-43 313.2 22.6 195 33-251 3-198 (207)
266 TIGR01187 potA spermidine/putr 100.0 1.4E-38 3.1E-43 334.8 23.1 186 67-267 1-189 (325)
267 PRK13540 cytochrome c biogenes 100.0 1.6E-38 3.5E-43 312.0 21.8 192 33-248 2-196 (200)
268 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.8E-38 3.9E-43 325.9 22.5 212 34-268 4-225 (275)
269 PRK10762 D-ribose transporter 100.0 1.5E-38 3.2E-43 354.0 23.5 205 50-266 266-482 (501)
270 cd03244 ABCC_MRP_domain2 Domai 100.0 1.6E-38 3.4E-43 316.6 21.0 206 34-262 4-220 (221)
271 cd03229 ABC_Class3 This class 100.0 2.1E-38 4.6E-43 305.5 20.8 160 48-256 12-178 (178)
272 TIGR02633 xylG D-xylose ABC tr 100.0 2E-38 4.3E-43 352.9 23.7 206 48-264 272-488 (500)
273 PRK13545 tagH teichoic acids e 100.0 7.7E-38 1.7E-42 339.9 27.5 214 32-270 21-234 (549)
274 PRK10938 putative molybdenum t 100.0 1.3E-38 2.7E-43 353.6 22.0 209 32-267 3-223 (490)
275 TIGR01193 bacteriocin_ABC ABC- 100.0 8.6E-39 1.9E-43 369.8 21.5 213 33-268 474-697 (708)
276 TIGR03375 type_I_sec_LssB type 100.0 1.1E-38 2.5E-43 368.1 22.3 215 33-269 464-689 (694)
277 PRK11288 araG L-arabinose tran 100.0 1.5E-38 3.3E-43 353.8 22.2 205 50-266 267-483 (501)
278 COG1129 MglA ABC-type sugar tr 100.0 3E-38 6.6E-43 339.7 23.1 209 43-263 15-229 (500)
279 TIGR00958 3a01208 Conjugate Tr 100.0 1.2E-38 2.7E-43 367.9 21.5 213 33-268 479-702 (711)
280 COG0396 sufC Cysteine desulfur 100.0 1.1E-37 2.4E-42 300.7 24.2 232 32-277 3-242 (251)
281 PRK15439 autoinducer 2 ABC tra 100.0 2.7E-38 5.8E-43 352.4 22.9 204 51-266 278-490 (510)
282 cd03246 ABCC_Protease_Secretio 100.0 4.7E-38 1E-42 301.7 20.5 155 49-257 15-173 (173)
283 cd03247 ABCC_cytochrome_bd The 100.0 6.1E-38 1.3E-42 302.3 21.3 161 49-261 15-178 (178)
284 TIGR01842 type_I_sec_PrtD type 100.0 3.2E-38 6.8E-43 354.7 22.3 216 33-267 317-541 (544)
285 cd03288 ABCC_SUR2 The SUR doma 100.0 3.7E-38 8.1E-43 321.3 20.8 213 33-268 20-243 (257)
286 PRK13657 cyclic beta-1,2-gluca 100.0 4.5E-38 9.8E-43 356.6 23.6 212 33-267 335-557 (588)
287 COG4987 CydC ABC-type transpor 100.0 4.5E-39 9.7E-44 341.8 13.7 238 9-268 308-561 (573)
288 KOG0055 Multidrug/pheromone ex 100.0 9.7E-39 2.1E-43 367.9 17.5 218 32-268 350-576 (1228)
289 COG4619 ABC-type uncharacteriz 100.0 5.9E-39 1.3E-43 294.4 12.2 194 47-257 14-212 (223)
290 COG4161 ArtP ABC-type arginine 100.0 5.2E-38 1.1E-42 286.3 18.0 205 46-264 12-226 (242)
291 TIGR02203 MsbA_lipidA lipid A 100.0 4.7E-38 1E-42 355.4 22.1 214 33-267 331-555 (571)
292 cd03369 ABCC_NFT1 Domain 2 of 100.0 1.3E-37 2.9E-42 307.0 22.3 197 33-263 7-207 (207)
293 TIGR01846 type_I_sec_HlyB type 100.0 7.7E-38 1.7E-42 361.0 21.9 214 33-268 456-680 (694)
294 cd03214 ABC_Iron-Siderophores_ 100.0 6.5E-38 1.4E-42 302.7 17.8 164 49-261 12-180 (180)
295 TIGR02204 MsbA_rel ABC transpo 100.0 1.5E-37 3.2E-42 351.8 22.6 214 33-267 338-562 (576)
296 PRK10789 putative multidrug tr 100.0 1.9E-37 4.2E-42 350.0 22.4 200 48-267 327-537 (569)
297 PRK10535 macrolide transporter 100.0 7.6E-37 1.6E-41 349.1 27.4 220 32-267 4-231 (648)
298 PRK13541 cytochrome c biogenes 100.0 6.5E-37 1.4E-41 299.4 22.2 182 34-238 3-184 (195)
299 cd03250 ABCC_MRP_domain1 Domai 100.0 3.8E-37 8.3E-42 303.1 20.6 179 49-256 18-204 (204)
300 cd03290 ABCC_SUR1_N The SUR do 100.0 6.9E-37 1.5E-41 304.3 22.2 188 49-256 14-218 (218)
301 PRK15177 Vi polysaccharide exp 100.0 7.9E-37 1.7E-41 303.0 22.5 195 50-272 1-196 (213)
302 COG4618 ArpD ABC-type protease 100.0 1.4E-37 3.1E-42 327.6 17.2 211 45-272 345-564 (580)
303 COG3845 ABC-type uncharacteriz 100.0 5.3E-37 1.1E-41 323.9 21.5 205 46-262 14-223 (501)
304 cd03228 ABCC_MRP_Like The MRP 100.0 6.5E-37 1.4E-41 293.3 20.2 152 50-256 16-171 (171)
305 TIGR01192 chvA glucan exporter 100.0 4.1E-37 8.8E-42 348.2 21.9 213 33-268 335-558 (585)
306 COG4172 ABC-type uncharacteriz 100.0 7.7E-37 1.7E-41 313.6 20.9 224 32-268 276-516 (534)
307 cd03237 ABC_RNaseL_inhibitor_d 100.0 1.8E-36 4E-41 306.7 23.3 189 51-266 9-205 (246)
308 PTZ00265 multidrug resistance 100.0 2.7E-37 5.9E-42 376.9 19.4 220 33-267 1166-1451(1466)
309 cd03216 ABC_Carb_Monos_I This 100.0 2.8E-36 6.1E-41 286.7 21.9 146 48-259 12-162 (163)
310 TIGR02868 CydC thiol reductant 100.0 3.6E-37 7.8E-42 345.2 18.5 185 33-237 335-529 (529)
311 cd03223 ABCD_peroxisomal_ALDP 100.0 2.6E-36 5.6E-41 287.8 20.8 151 49-255 14-164 (166)
312 PRK15064 ABC transporter ATP-b 100.0 3.7E-36 8E-41 336.9 25.6 211 33-268 2-242 (530)
313 cd03291 ABCC_CFTR1 The CFTR su 100.0 4.3E-36 9.2E-41 309.4 23.1 189 49-267 50-246 (282)
314 PRK10982 galactose/methyl gala 100.0 1.9E-36 4.2E-41 336.2 22.1 204 49-264 261-476 (491)
315 COG4586 ABC-type uncharacteriz 100.0 1.3E-36 2.7E-41 299.0 15.8 209 48-271 36-249 (325)
316 COG1119 ModF ABC-type molybden 100.0 9.1E-37 2E-41 297.6 14.7 214 33-262 32-256 (257)
317 PRK11819 putative ABC transpor 100.0 9.7E-36 2.1E-40 335.0 25.3 210 32-267 6-249 (556)
318 TIGR02857 CydD thiol reductant 100.0 1.4E-36 3E-41 340.4 18.2 198 33-251 321-529 (529)
319 PRK10938 putative molybdenum t 100.0 5E-36 1.1E-40 332.8 21.4 214 32-261 260-485 (490)
320 PLN03232 ABC transporter C fam 100.0 5.5E-36 1.2E-40 368.1 23.6 213 33-268 1235-1458(1495)
321 KOG0055 Multidrug/pheromone ex 100.0 3.6E-36 7.8E-41 346.7 20.4 217 33-268 988-1213(1228)
322 PLN03130 ABC transporter C fam 100.0 6.4E-36 1.4E-40 368.0 24.0 213 33-268 1238-1461(1622)
323 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.2E-35 2.5E-40 334.2 23.2 211 32-268 4-248 (552)
324 PRK15064 ABC transporter ATP-b 100.0 1E-35 2.3E-40 333.2 22.6 191 47-267 330-524 (530)
325 COG4608 AppF ABC-type oligopep 100.0 9E-36 1.9E-40 296.5 19.4 190 32-268 4-199 (268)
326 COG4172 ABC-type uncharacteriz 100.0 1.4E-35 3.1E-40 304.3 21.3 230 32-267 6-246 (534)
327 PRK10522 multidrug transporter 100.0 1.5E-35 3.3E-40 333.1 22.9 201 33-260 323-530 (547)
328 cd03236 ABC_RNaseL_inhibitor_d 100.0 1.4E-35 3E-40 301.6 18.2 190 49-261 14-220 (255)
329 TIGR01194 cyc_pep_trnsptr cycl 100.0 3.6E-35 7.8E-40 330.5 22.9 207 33-260 338-551 (555)
330 PTZ00243 ABC transporter; Prov 100.0 2.8E-35 6.1E-40 361.8 23.9 213 33-268 1309-1533(1560)
331 COG1101 PhnK ABC-type uncharac 100.0 1.6E-35 3.4E-40 282.3 16.8 215 35-261 4-231 (263)
332 PTZ00265 multidrug resistance 100.0 2.6E-35 5.7E-40 359.5 23.3 212 33-255 383-655 (1466)
333 TIGR00957 MRP_assoc_pro multi 100.0 3.6E-35 7.8E-40 361.4 23.6 213 33-268 1285-1508(1522)
334 PRK13409 putative ATPase RIL; 100.0 7.6E-35 1.6E-39 327.9 23.0 183 51-263 354-537 (590)
335 PRK11819 putative ABC transpor 100.0 1E-34 2.2E-39 326.8 23.7 191 47-264 335-529 (556)
336 COG4674 Uncharacterized ABC-ty 100.0 2.5E-35 5.3E-40 276.8 14.9 218 33-267 6-234 (249)
337 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.6E-34 3.4E-39 325.1 24.2 191 47-264 333-527 (552)
338 KOG0056 Heavy metal exporter H 100.0 1.4E-35 3E-40 309.2 13.7 216 34-268 539-761 (790)
339 TIGR01271 CFTR_protein cystic 100.0 2.3E-34 5E-39 353.3 24.6 212 33-268 1218-1440(1490)
340 KOG0059 Lipid exporter ABCA1 a 100.0 1.6E-34 3.5E-39 339.0 20.3 207 51-272 580-791 (885)
341 COG1134 TagH ABC-type polysacc 100.0 1.1E-33 2.3E-38 276.5 21.8 205 46-273 37-241 (249)
342 PRK10636 putative ABC transpor 100.0 5.9E-34 1.3E-38 324.6 23.2 191 47-268 323-517 (638)
343 cd03222 ABC_RNaseL_inhibitor T 100.0 5E-34 1.1E-38 274.0 18.6 146 47-264 11-159 (177)
344 cd03238 ABC_UvrA The excision 100.0 5.6E-34 1.2E-38 273.4 18.7 162 47-261 6-170 (176)
345 PRK11147 ABC transporter ATPas 100.0 1.7E-33 3.8E-38 321.2 23.0 193 47-266 330-526 (635)
346 COG4136 ABC-type uncharacteriz 100.0 5.2E-34 1.1E-38 257.3 14.0 181 47-238 13-196 (213)
347 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 2E-33 4.2E-38 261.7 18.0 132 49-256 13-144 (144)
348 PLN03073 ABC transporter F fam 100.0 4.8E-33 1E-37 318.8 25.2 205 33-269 509-715 (718)
349 TIGR00954 3a01203 Peroxysomal 100.0 1.3E-33 2.9E-38 322.8 20.3 200 33-255 452-655 (659)
350 PRK10636 putative ABC transpor 100.0 3.3E-33 7.2E-38 318.4 23.0 207 33-266 2-234 (638)
351 PLN03232 ABC transporter C fam 100.0 3.5E-33 7.6E-38 343.4 22.8 205 33-267 615-827 (1495)
352 PLN03130 ABC transporter C fam 100.0 5.1E-33 1.1E-37 342.4 22.4 204 33-267 615-827 (1622)
353 PRK11147 ABC transporter ATPas 100.0 1.8E-32 3.9E-37 312.8 23.4 206 32-266 3-241 (635)
354 PRK13409 putative ATPase RIL; 100.0 7E-33 1.5E-37 312.0 18.9 181 49-255 87-287 (590)
355 cd00267 ABC_ATPase ABC (ATP-bi 100.0 2.8E-32 6E-37 257.4 19.0 142 49-256 12-157 (157)
356 COG4167 SapF ABC-type antimicr 100.0 2.6E-32 5.7E-37 253.7 18.0 206 48-267 25-238 (267)
357 COG5265 ATM1 ABC-type transpor 100.0 1.8E-33 4E-38 290.7 11.3 206 46-269 273-487 (497)
358 COG4133 CcmA ABC-type transpor 100.0 1.6E-32 3.4E-37 257.3 16.5 178 46-239 12-192 (209)
359 TIGR01271 CFTR_protein cystic 100.0 2.5E-32 5.5E-37 335.4 22.3 193 49-267 439-635 (1490)
360 TIGR00957 MRP_assoc_pro multi 100.0 3.2E-32 6.9E-37 335.4 22.6 208 33-267 637-849 (1522)
361 COG4107 PhnK ABC-type phosphon 100.0 5.7E-32 1.2E-36 249.6 14.7 206 45-268 15-241 (258)
362 PTZ00243 ABC transporter; Prov 100.0 2.3E-31 5E-36 327.3 21.7 191 48-267 672-869 (1560)
363 PF00005 ABC_tran: ABC transpo 100.0 2.5E-31 5.4E-36 244.5 13.5 133 52-206 1-137 (137)
364 COG0488 Uup ATPase components 100.0 6.5E-31 1.4E-35 289.6 19.1 205 33-264 4-236 (530)
365 cd03270 ABC_UvrA_I The excisio 100.0 6.1E-30 1.3E-34 256.0 20.7 192 47-261 6-226 (226)
366 PLN03073 ABC transporter F fam 100.0 8.3E-31 1.8E-35 300.4 16.4 207 47-266 188-429 (718)
367 COG4778 PhnL ABC-type phosphon 100.0 1.5E-30 3.2E-35 239.5 13.8 191 48-251 23-225 (235)
368 cd03271 ABC_UvrA_II The excisi 100.0 1.6E-29 3.4E-34 256.7 19.9 199 49-263 8-261 (261)
369 KOG0054 Multidrug resistance-a 100.0 1E-29 2.2E-34 299.8 20.7 206 32-267 518-730 (1381)
370 KOG0054 Multidrug resistance-a 100.0 2.8E-29 6.1E-34 296.1 19.0 242 4-268 1100-1362(1381)
371 cd03278 ABC_SMC_barmotin Barmo 100.0 2.2E-29 4.9E-34 246.5 13.7 170 53-255 14-192 (197)
372 COG4138 BtuD ABC-type cobalami 100.0 2.3E-29 5E-34 232.6 5.8 197 50-267 13-220 (248)
373 COG1129 MglA ABC-type sugar tr 100.0 1.9E-27 4E-32 256.5 20.9 201 51-263 274-485 (500)
374 COG0488 Uup ATPase components 99.9 5.1E-27 1.1E-31 258.8 20.1 189 48-268 334-525 (530)
375 cd03272 ABC_SMC3_euk Eukaryoti 99.9 1.7E-27 3.7E-32 240.6 14.8 192 45-252 11-234 (243)
376 cd03274 ABC_SMC4_euk Eukaryoti 99.9 3.6E-28 7.8E-33 240.6 2.6 181 45-253 13-204 (212)
377 cd03240 ABC_Rad50 The catalyti 99.9 1.5E-26 3.2E-31 227.9 12.8 168 54-256 15-200 (204)
378 cd03273 ABC_SMC2_euk Eukaryoti 99.9 8.3E-27 1.8E-31 237.0 9.5 183 62-252 25-242 (251)
379 PRK00635 excinuclease ABC subu 99.9 6E-25 1.3E-29 265.9 23.1 137 122-267 759-905 (1809)
380 cd03279 ABC_sbcCD SbcCD and ot 99.9 2.6E-25 5.7E-30 220.5 15.2 179 53-256 18-210 (213)
381 PRK00349 uvrA excinuclease ABC 99.9 3.6E-24 7.8E-29 249.6 22.9 127 126-268 792-927 (943)
382 COG3845 ABC-type uncharacteriz 99.9 3.4E-24 7.3E-29 227.1 20.0 206 49-265 271-489 (501)
383 COG4170 SapD ABC-type antimicr 99.9 3E-25 6.5E-30 210.7 10.8 231 33-268 4-248 (330)
384 COG4178 ABC-type uncharacteriz 99.9 2E-24 4.3E-29 237.3 16.9 197 32-254 392-589 (604)
385 TIGR00630 uvra excinuclease AB 99.9 5.6E-23 1.2E-27 239.3 22.6 126 125-266 789-923 (924)
386 COG4615 PvdE ABC-type sideroph 99.9 2.1E-24 4.6E-29 221.5 7.8 189 50-261 337-530 (546)
387 cd03276 ABC_SMC6_euk Eukaryoti 99.9 2.2E-23 4.9E-28 204.3 14.7 167 52-256 12-192 (198)
388 cd03275 ABC_SMC1_euk Eukaryoti 99.9 3.9E-23 8.5E-28 209.6 11.2 183 60-256 21-236 (247)
389 COG1245 Predicted ATPase, RNas 99.9 1.2E-22 2.6E-27 212.0 14.4 181 51-261 356-537 (591)
390 KOG0927 Predicted transporter 99.9 1.2E-22 2.7E-27 216.2 13.4 204 45-266 84-307 (614)
391 KOG0927 Predicted transporter 99.9 2.5E-22 5.5E-27 213.8 11.3 186 50-263 404-591 (614)
392 KOG0060 Long-chain acyl-CoA tr 99.9 4.3E-21 9.4E-26 205.7 15.8 190 48-255 447-643 (659)
393 PF01061 ABC2_membrane: ABC-2 99.8 4.3E-22 9.4E-27 194.5 1.9 205 353-559 1-210 (210)
394 cd03280 ABC_MutS2 MutS2 homolo 99.8 1.1E-20 2.3E-25 185.7 11.8 154 51-261 16-172 (200)
395 cd03277 ABC_SMC5_euk Eukaryoti 99.8 3E-20 6.5E-25 184.2 13.4 82 173-256 122-211 (213)
396 KOG0062 ATPase component of AB 99.8 5.4E-21 1.2E-25 202.7 6.9 182 45-256 89-272 (582)
397 COG1245 Predicted ATPase, RNas 99.8 1.1E-20 2.3E-25 197.6 8.6 182 58-261 96-294 (591)
398 KOG2355 Predicted ABC-type tra 99.8 1.3E-19 2.8E-24 172.2 14.6 211 31-269 12-238 (291)
399 COG2401 ABC-type ATPase fused 99.8 1E-19 2.3E-24 188.1 12.2 184 47-252 394-583 (593)
400 cd03239 ABC_SMC_head The struc 99.8 5.6E-19 1.2E-23 170.2 16.3 76 178-255 95-174 (178)
401 cd03283 ABC_MutS-like MutS-lik 99.8 6.7E-20 1.4E-24 179.8 8.0 135 49-238 14-149 (199)
402 KOG0066 eIF2-interacting prote 99.8 3.3E-19 7.2E-24 184.8 13.0 175 47-251 598-774 (807)
403 COG0178 UvrA Excinuclease ATPa 99.8 1.3E-18 2.9E-23 192.8 18.5 129 125-268 783-919 (935)
404 PRK00635 excinuclease ABC subu 99.8 1.4E-18 3.1E-23 211.0 20.0 129 125-268 1660-1796(1809)
405 KOG0062 ATPase component of AB 99.8 1.5E-18 3.3E-23 184.2 14.5 182 50-259 378-559 (582)
406 cd03285 ABC_MSH2_euk MutS2 hom 99.8 3.3E-19 7.2E-24 177.8 8.2 153 48-262 16-175 (222)
407 cd03241 ABC_RecN RecN ATPase i 99.8 6.5E-18 1.4E-22 174.2 16.9 75 176-253 169-247 (276)
408 KOG0064 Peroxisomal long-chain 99.8 1.6E-18 3.5E-23 183.7 10.4 172 47-239 493-671 (728)
409 cd03227 ABC_Class2 ABC-type Cl 99.8 6.5E-18 1.4E-22 160.4 12.6 73 177-251 77-153 (162)
410 TIGR00630 uvra excinuclease AB 99.7 7E-17 1.5E-21 188.6 16.0 136 124-267 433-582 (924)
411 cd03243 ABC_MutS_homologs The 99.7 9E-18 2E-22 165.2 7.1 156 54-266 21-177 (202)
412 PRK00349 uvrA excinuclease ABC 99.7 6.8E-17 1.5E-21 189.0 15.4 136 124-267 435-584 (943)
413 cd03242 ABC_RecF RecF is a rec 99.7 2.6E-16 5.7E-21 161.7 17.0 78 174-257 180-269 (270)
414 cd03282 ABC_MSH4_euk MutS4 hom 99.7 4.1E-17 8.8E-22 160.6 8.9 137 47-238 14-152 (204)
415 KOG0066 eIF2-interacting prote 99.7 4.8E-17 1E-21 169.0 5.0 201 47-262 275-493 (807)
416 cd03284 ABC_MutS1 MutS1 homolo 99.6 1.4E-15 3.1E-20 151.1 10.7 158 48-267 17-180 (216)
417 TIGR02858 spore_III_AA stage I 99.6 2.2E-15 4.9E-20 153.9 10.9 139 63-266 112-267 (270)
418 KOG0063 RNAse L inhibitor, ABC 99.5 5.3E-14 1.2E-18 146.6 11.1 176 49-251 349-530 (592)
419 smart00534 MUTSac ATPase domai 99.5 1.1E-14 2.4E-19 141.4 4.6 82 175-260 59-142 (185)
420 PRK00064 recF recombination pr 99.5 1.1E-12 2.5E-17 140.1 20.1 79 174-257 270-359 (361)
421 cd03281 ABC_MSH5_euk MutS5 hom 99.5 5.1E-13 1.1E-17 132.5 12.2 132 50-238 17-155 (213)
422 TIGR01069 mutS2 MutS2 family p 99.4 1.3E-13 2.8E-18 159.6 9.1 137 49-239 303-447 (771)
423 PF02463 SMC_N: RecF/RecN/SMC 99.4 5.4E-14 1.2E-18 140.0 4.0 88 151-252 121-212 (220)
424 cd00820 PEPCK_HprK Phosphoenol 99.4 3.1E-13 6.8E-18 118.3 6.6 72 49-134 2-77 (107)
425 KOG0063 RNAse L inhibitor, ABC 99.4 4.5E-13 9.6E-18 139.8 7.8 174 60-251 98-286 (592)
426 cd03287 ABC_MSH3_euk MutS3 hom 99.4 3.2E-12 6.8E-17 127.4 12.7 135 48-238 17-155 (222)
427 PTZ00132 GTP-binding nuclear p 99.4 1E-12 2.2E-17 130.3 6.9 44 182-225 157-205 (215)
428 TIGR01247 drrB daunorubicin re 99.3 1.7E-10 3.7E-15 116.0 21.6 119 440-560 87-207 (236)
429 PRK00409 recombination and DNA 99.3 2.7E-12 5.9E-17 149.1 6.6 82 175-260 388-470 (782)
430 TIGR00634 recN DNA repair prot 99.3 1.1E-11 2.4E-16 140.1 9.6 76 176-255 439-518 (563)
431 PRK07721 fliI flagellum-specif 99.2 1.5E-10 3.2E-15 125.9 17.1 174 48-265 145-340 (438)
432 PHA02562 46 endonuclease subun 99.2 1.4E-11 3.1E-16 139.4 9.4 80 174-257 465-555 (562)
433 PRK10869 recombination and rep 99.2 2.6E-11 5.7E-16 136.2 10.5 75 176-254 429-507 (553)
434 TIGR00618 sbcc exonuclease Sbc 99.2 2.9E-11 6.3E-16 146.0 11.0 81 172-254 945-1035(1042)
435 COG0178 UvrA Excinuclease ATPa 99.2 1.2E-10 2.5E-15 130.5 14.5 138 124-268 427-577 (935)
436 PRK08533 flagellar accessory p 99.2 4.2E-11 9.2E-16 120.2 9.7 150 57-251 19-183 (230)
437 PF13304 AAA_21: AAA domain; P 99.2 2.1E-11 4.6E-16 121.1 6.6 64 175-238 234-300 (303)
438 cd03286 ABC_MSH6_euk MutS6 hom 99.2 2.7E-11 5.8E-16 120.4 7.1 137 48-238 16-154 (218)
439 cd01128 rho_factor Transcripti 99.2 9.5E-11 2E-15 118.7 10.5 179 57-257 11-211 (249)
440 cd01124 KaiC KaiC is a circadi 99.2 3.5E-10 7.6E-15 109.2 13.1 79 173-251 67-162 (187)
441 COG3910 Predicted ATPase [Gene 99.1 3.5E-10 7.7E-15 107.0 11.0 68 170-238 122-189 (233)
442 TIGR03062 pip_yhgE_Cterm YhgE/ 99.1 1.2E-09 2.6E-14 107.8 15.1 117 441-561 58-176 (208)
443 TIGR03861 phenyl_ABC_PedC alco 99.1 1.1E-08 2.5E-13 104.0 22.7 201 352-557 1-220 (253)
444 PRK13695 putative NTPase; Prov 99.1 4.2E-11 9.2E-16 114.9 4.2 80 175-261 76-157 (174)
445 TIGR01291 nodJ ABC-2 type tran 99.1 2.3E-08 5.1E-13 101.9 23.7 199 355-560 7-219 (253)
446 PRK03918 chromosome segregatio 99.0 4.7E-10 1E-14 133.7 10.3 78 173-252 784-867 (880)
447 TIGR00025 Mtu_efflux ABC trans 99.0 2.2E-08 4.7E-13 100.6 20.1 129 429-560 66-199 (232)
448 TIGR02788 VirB11 P-type DNA tr 99.0 9.2E-10 2E-14 115.4 9.8 143 55-267 137-280 (308)
449 PRK10246 exonuclease subunit S 99.0 8.1E-10 1.8E-14 133.1 10.6 77 173-251 945-1030(1047)
450 cd01120 RecA-like_NTPases RecA 99.0 1.2E-09 2.6E-14 102.0 9.3 64 177-240 67-140 (165)
451 PRK13830 conjugal transfer pro 99.0 1.1E-08 2.4E-13 120.4 18.8 78 193-275 650-736 (818)
452 PRK01156 chromosome segregatio 98.9 2.5E-09 5.3E-14 127.8 10.7 81 173-255 797-886 (895)
453 PRK06793 fliI flagellum-specif 98.9 4.9E-09 1.1E-13 113.4 11.2 155 49-262 144-305 (432)
454 cd01131 PilT Pilus retraction 98.9 4.7E-09 1E-13 103.1 10.0 56 187-251 66-121 (198)
455 PRK06067 flagellar accessory p 98.9 1.4E-08 2.9E-13 102.3 13.6 160 51-251 13-185 (234)
456 PRK15066 inner membrane transp 98.9 4E-07 8.6E-12 93.0 23.9 203 351-559 6-220 (257)
457 TIGR00606 rad50 rad50. This fa 98.9 3.8E-09 8.2E-14 130.4 8.6 76 167-245 1191-1277(1311)
458 TIGR02168 SMC_prok_B chromosom 98.8 4.2E-09 9.1E-14 128.9 7.7 77 173-252 1085-1165(1179)
459 TIGR03238 dnd_assoc_3 dnd syst 98.8 2.6E-09 5.7E-14 115.4 4.8 51 49-106 19-70 (504)
460 PRK06995 flhF flagellar biosyn 98.8 1.8E-08 3.9E-13 110.5 10.2 151 50-235 244-400 (484)
461 cd01125 repA Hexameric Replica 98.7 3.6E-08 7.8E-13 99.6 9.7 136 62-238 1-160 (239)
462 smart00382 AAA ATPases associa 98.7 3.2E-07 7E-12 82.3 14.8 118 61-235 1-124 (148)
463 TIGR02169 SMC_prok_A chromosom 98.7 2.2E-08 4.9E-13 122.6 8.7 77 173-252 1070-1150(1164)
464 PRK02224 chromosome segregatio 98.7 3.3E-08 7.1E-13 118.0 9.6 77 174-252 778-867 (880)
465 TIGR01248 drrC daunorubicin re 98.7 6.4E-07 1.4E-11 84.2 15.7 129 424-555 14-146 (152)
466 TIGR01420 pilT_fam pilus retra 98.7 1.6E-07 3.5E-12 99.9 12.6 56 187-251 187-242 (343)
467 PRK13891 conjugal transfer pro 98.6 6.9E-07 1.5E-11 105.7 15.5 52 188-239 680-732 (852)
468 TIGR00611 recf recF protein. A 98.5 1.1E-07 2.5E-12 101.8 7.2 61 175-238 273-342 (365)
469 PRK07196 fliI flagellum-specif 98.5 7.8E-08 1.7E-12 104.2 5.9 174 48-260 142-333 (434)
470 TIGR02655 circ_KaiC circadian 98.5 4.4E-09 9.6E-14 116.9 -4.1 165 51-251 9-189 (484)
471 cd01130 VirB11-like_ATPase Typ 98.5 1.8E-07 3.9E-12 90.9 7.5 82 52-138 15-99 (186)
472 TIGR01026 fliI_yscN ATPase Fli 98.5 8.6E-07 1.9E-11 96.8 13.5 175 48-266 150-346 (440)
473 TIGR03881 KaiC_arch_4 KaiC dom 98.5 3.7E-08 8.1E-13 98.6 2.4 33 51-83 8-41 (229)
474 COG0419 SbcC ATPase involved i 98.5 3.7E-07 8.1E-12 109.1 10.3 81 173-255 811-899 (908)
475 cd02023 UMPK Uridine monophosp 98.5 1.2E-07 2.6E-12 92.8 4.9 112 64-210 1-113 (198)
476 PRK14079 recF recombination pr 98.4 4.7E-07 1E-11 96.6 8.2 76 176-260 262-346 (349)
477 PRK05399 DNA mismatch repair p 98.4 6.7E-07 1.4E-11 105.6 9.0 137 50-247 596-738 (854)
478 PRK13898 type IV secretion sys 98.3 1.2E-05 2.5E-10 95.1 17.4 49 191-239 638-687 (800)
479 PRK09825 idnK D-gluconate kina 98.3 3.7E-07 8E-12 88.0 3.4 65 61-134 2-69 (176)
480 PLN03210 Resistant to P. syrin 98.3 1.9E-06 4E-11 105.7 10.1 163 54-275 199-365 (1153)
481 TIGR02680 conserved hypothetic 98.3 1.2E-06 2.5E-11 108.3 7.4 61 174-237 1244-1316(1353)
482 COG0842 ABC-type multidrug tra 98.3 2.7E-05 5.8E-10 79.1 16.3 133 427-561 116-251 (286)
483 PRK06002 fliI flagellum-specif 98.3 1.3E-06 2.8E-11 95.0 6.8 68 48-121 152-230 (450)
484 cd01122 GP4d_helicase GP4d_hel 98.2 6.6E-05 1.4E-09 77.0 16.4 39 48-86 16-54 (271)
485 PRK09270 nucleoside triphospha 98.1 3E-06 6.5E-11 85.1 6.1 74 60-139 31-108 (229)
486 PRK13873 conjugal transfer ATP 98.1 3.8E-05 8.3E-10 90.9 16.1 46 193-238 633-679 (811)
487 PF13555 AAA_29: P-loop contai 98.1 3.1E-06 6.7E-11 66.7 4.2 36 52-87 12-48 (62)
488 PRK06315 type III secretion sy 98.1 7.1E-06 1.5E-10 89.4 8.4 109 49-163 152-277 (442)
489 TIGR02903 spore_lon_C ATP-depe 98.1 4.8E-06 1E-10 95.1 7.4 115 61-222 174-291 (615)
490 PF13558 SbcCD_C: Putative exo 98.1 6.9E-06 1.5E-10 70.2 6.3 50 173-222 28-90 (90)
491 PRK01889 GTPase RsgA; Reviewed 98.1 5.1E-06 1.1E-10 88.9 6.8 105 52-167 185-290 (356)
492 PRK00454 engB GTP-binding prot 98.1 5.2E-05 1.1E-09 73.4 13.0 67 152-226 126-195 (196)
493 cd00009 AAA The AAA+ (ATPases 98.1 2E-05 4.3E-10 71.3 9.2 55 183-238 72-131 (151)
494 PRK10078 ribose 1,5-bisphospho 98.1 4.2E-06 9.2E-11 81.2 4.9 37 62-106 2-38 (186)
495 TIGR00554 panK_bact pantothena 98.0 6.5E-06 1.4E-10 85.2 5.3 75 61-139 61-138 (290)
496 TIGR03518 ABC_perm_GldF glidin 98.0 0.0025 5.3E-08 64.6 23.7 122 429-552 71-208 (240)
497 TIGR00235 udk uridine kinase. 98.0 3.4E-06 7.3E-11 83.3 2.1 28 60-87 4-31 (207)
498 PRK08149 ATP synthase SpaL; Va 97.9 1.6E-05 3.5E-10 86.2 7.3 71 48-121 138-216 (428)
499 TIGR00416 sms DNA repair prote 97.9 3.3E-05 7.1E-10 85.2 9.0 62 194-256 169-247 (454)
500 PRK03846 adenylylsulfate kinas 97.9 7.1E-06 1.5E-10 80.4 3.5 56 60-119 22-77 (198)
No 1
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1e-106 Score=919.97 Aligned_cols=550 Identities=47% Similarity=0.863 Sum_probs=468.8
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLT 127 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lT 127 (604)
++.+|+|+|+++++||++||+||||||||||||+|+|+.+++ ..+|+|.+||+++....++.+|||+|++.+++.+|
T Consensus 80 ~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~---~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGN---NFTGTILANNRKPTKQILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCC---ceeEEEEECCEECchhhccceEEECcccccCCcCC
Confidence 577999999999999999999999999999999999998632 14899999999987656677999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 046786 128 VAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSG 207 (604)
Q Consensus 128 v~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsg 207 (604)
|+||+.|.+.++.+...+++++.++++++++.+||.+++||++|++..++||||||||++||++|+++|++|+|||||+|
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsg 236 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 236 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCC
Confidence 99999999887766555666777889999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHHHHHHhCCCCCCCCCChHHHH
Q 046786 208 LDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVINYFAGIGYVPSVAMNPADFL 287 (604)
Q Consensus 208 LD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~~~f~~~g~~~p~~~npadf~ 287 (604)
||+.++..+++.|++++++|+|||+++|||+.+++++||++++| ++|+++|.|+++++.+||+++|++||++.|||||+
T Consensus 237 LD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL-~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ 315 (659)
T PLN03211 237 LDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVL-SEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFL 315 (659)
T ss_pred cCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEe-cCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHH
Confidence 99999999999999999889999999999987789999999999 89999999999999999999999999999999999
Q ss_pred HHhhcCCCCCC--CccchHHHHHHHHHHHHhhhhHHHHHhhhhc--CCCCCc----ccccccc-cCCCCCCCHHHHHHHH
Q 046786 288 LDLANGVASGD--PKENREAVKQTLISAYKSNISNKLKQEFEDG--GDHSLT----TDSKNYK-KTSKWSTTWWQHFSVL 358 (604)
Q Consensus 288 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~-~~~~~~~s~~~Q~~~l 358 (604)
+|+++.+.... .+.+.+...+.+.+.|++...+...+..+.. ...... ...+... ....+.++||+|+.+|
T Consensus 316 ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L 395 (659)
T PLN03211 316 LDLANGVCQTDGVSEREKPNVKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSIL 395 (659)
T ss_pred HHHcCccccCCCccccccchHHHHHHHHHHhhccHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHH
Confidence 99987532111 0111222334455666543322222211110 000000 0000000 1123567899999999
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHhHHHHHHHHHhhHhhhHHHHHHhcCC
Q 046786 359 LRRDLKERRHDTFDGLKIGQILFLSIITGLVWWQSSTDNIEDQVGLLFFYSRQAGFFPLFQALHTFPLERMMLEKERSSG 438 (604)
Q Consensus 359 ~~R~~~~~r~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~i~~~~~er~v~~rE~~~g 438 (604)
++|+++++|++.+..+|+++.+++|+++|++||+++..++++|.|++||+++++++.+++.+++.|+.||++|+||+.+|
T Consensus 396 ~~R~~~~~r~~~~~~~r~~~~i~~~ll~G~lf~~~~~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~ 475 (659)
T PLN03211 396 LQRSLKERKHESFNTLRVFQVIAAALLAGLMWWHSDFRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASG 475 (659)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCC
Confidence 99999999998888899999999999999999999888999999999999999888888999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 046786 439 MYRLSSYIMAKTAGDFVMELVLPTVFVIITYWMGGLKARVINFLSTLAATLYTALVAQSLGLAVGALVLNQRKAGTIATT 518 (604)
Q Consensus 439 ~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~F~~~~~~~~l~~~~~~s~~~~i~a~~~~~~~A~~~~~~ 518 (604)
+|++++|++||+++|+|+.++.+++|++|+|||+||++++.+||.|+++++++.++++++|+++|+++|+..+|+.++++
T Consensus 476 ~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~ 555 (659)
T PLN03211 476 MYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTV 555 (659)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCchhhHHhhhhcCHHHHHHHHHHHHhcCCCC----ccccCCCC-CCCCccccCCcccceeccCCch
Q 046786 519 LMLTFLLTGGFFVQDVPAFISWLEYLSFTHYSYKLLLMSQYNPND----TYICASNS-NSNATCLVGDFPRIKFVGLNNK 593 (604)
Q Consensus 519 ~~~~~~lf~Gf~i~~ip~~~~Wl~yiSp~~y~~~~l~~nef~~~~----~~~C~~~~-~~~~~C~~~~~~~~~~~~~~~~ 593 (604)
+++++++|+||++++||+||+|++|+||++|+|||++.|||++.. .++|+... .....|.+.+. ..++..+.
T Consensus 556 ~~~~~~lfsGf~i~~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~---~~~~~~~~ 632 (659)
T PLN03211 556 TMLAFVLTGGFYVHKLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEE---DVAGQISP 632 (659)
T ss_pred HHHHHHHHhhhhHhhchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccchh---hhhcccch
Confidence 999999999999999999999999999999999999999998642 25786311 12234643221 22233468
Q ss_pred HhHHHHHhhcC
Q 046786 594 LLSVVMMAAMF 604 (604)
Q Consensus 594 ~~~~~~l~~~~ 604 (604)
|.++++|++|+
T Consensus 633 ~~~~~~l~~~~ 643 (659)
T PLN03211 633 ATSVSVLIFMF 643 (659)
T ss_pred HHHHHHHHHHH
Confidence 99999888763
No 2
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.2e-107 Score=913.04 Aligned_cols=559 Identities=42% Similarity=0.713 Sum_probs=483.4
Q ss_pred heeeeEEEEEeccc-cccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-hcc
Q 046786 33 LKKVNMLVIIKNSD-EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-EVK 110 (604)
Q Consensus 33 ~~~~~~~~~~~~~~-~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-~~~ 110 (604)
+.+.++.+..+.+. ..+++|+|||++++|||++|||||||||||||||+|+|+...+ ...+|+|++||++.+. .++
T Consensus 26 ~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~--~~~~G~ilvNG~~~~~~~~~ 103 (613)
T KOG0061|consen 26 LSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGG--LKLSGEILLNGRPRDSRSFR 103 (613)
T ss_pred eEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCC--CcceEEEEECCccCchhhhh
Confidence 45666666654432 4688999999999999999999999999999999999998753 1359999999977754 688
Q ss_pred ccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHH
Q 046786 111 RRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQ 190 (604)
Q Consensus 111 ~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~ 190 (604)
+.+|||+|||.++|+|||+|++.|++.+|+|...++++++++|+++++++||.+|+||++|+...|++||||||||+||.
T Consensus 104 ~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~ 183 (613)
T KOG0061|consen 104 KISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIAL 183 (613)
T ss_pred heeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHH
Confidence 89999999999999999999999999999999889999999999999999999999999999888999999999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHHHHH
Q 046786 191 ELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVINYF 270 (604)
Q Consensus 191 ~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~~~f 270 (604)
+|++||+||+|||||||||+.++.++++.||++|++|+|||+|+|||+.+++++||++++| ++|+++|+|+++++.+||
T Consensus 184 Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lL-s~G~~vy~G~~~~~~~ff 262 (613)
T KOG0061|consen 184 ELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLL-SEGEVVYSGSPRELLEFF 262 (613)
T ss_pred HHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhh-cCCcEEEecCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred HhCCCCCCCCCChHHHHHHhhcCCCCCCCccchHHHHHHHHHHHHhhhhHHHHHhhhhcCCCCCcccccccccCCCCCCC
Q 046786 271 AGIGYVPSVAMNPADFLLDLANGVASGDPKENREAVKQTLISAYKSNISNKLKQEFEDGGDHSLTTDSKNYKKTSKWSTT 350 (604)
Q Consensus 271 ~~~g~~~p~~~npadf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 350 (604)
++.|++||++.|||||++|+++.+ .+................++. .+...+........... ..+......++
T Consensus 263 ~~~G~~~P~~~Npadf~l~l~s~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~s 335 (613)
T KOG0061|consen 263 SSLGFPCPELENPADFLLDLLSVD-SGTRELEEAVRIAKLINKFSQ--TDNLKKTLEALEKSLST----SKKVEIGTSPS 335 (613)
T ss_pred HhCCCCCCCcCChHHHHHHHHccC-CCchhHHhHHHHHHHhhhccc--cchhhhhHHHHhhhccc----ccccccccCCc
Confidence 999999999999999999999854 111110011111111222221 00000000000000000 00111112789
Q ss_pred HHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHHHHHHHHHhcCCCC--cchhhHHHHHHHHHHHHhHHHHHHHHHhhHhh
Q 046786 351 WWQHFSVLLRRDLKE-RRHDTFDGLKIGQILFLSIITGLVWWQSST--DNIEDQVGLLFFYSRQAGFFPLFQALHTFPLE 427 (604)
Q Consensus 351 ~~~Q~~~l~~R~~~~-~r~~~~~~~~~~~~i~~~li~G~~f~~~~~--~~~~~~~g~lf~~~~~~~~~~~~~~i~~~~~e 427 (604)
||.|++.|++|.+++ +|++.+...|+++.+++|+++|++||+.+. .++++|.|++||.+.++.+..++++++.|+.|
T Consensus 336 ~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e 415 (613)
T KOG0061|consen 336 WWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFFILSFMTFLSMFGAVPVFPQE 415 (613)
T ss_pred HHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHH
Confidence 999999999999998 566778899999999999999999999987 57779999999999999899999999999999
Q ss_pred hHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 046786 428 RMMLEKERSSGMYRLSSYIMAKTAGDFVMELVLPTVFVIITYWMGGLKARVINFLSTLAATLYTALVAQSLGLAVGALVL 507 (604)
Q Consensus 428 r~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~F~~~~~~~~l~~~~~~s~~~~i~a~~~ 507 (604)
|++|.||+.+|+|+.++|++|++++++|+.++.+++|++|+|||+|++++..+|++|++++++..++++++|+++++++|
T Consensus 416 ~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~ 495 (613)
T KOG0061|consen 416 RPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVP 495 (613)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcccC--CchhhHHhhhhcCHHHHHHHHHHHHhcCCCCccccCCCCCCCCccccCCcccc
Q 046786 508 NQRKAGTIATTLMLTFLLTGGFFVQ--DVPAFISWLEYLSFTHYSYKLLLMSQYNPNDTYICASNSNSNATCLVGDFPRI 585 (604)
Q Consensus 508 ~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~y~~~~l~~nef~~~~~~~C~~~~~~~~~C~~~~~~~~ 585 (604)
|...|+.+++++++++++|+||+++ +||.||+|++|+||++|++|+++.|||++ ....|....+ ..|...+.+.+
T Consensus 496 ~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~-~~~~~~~~~~--~~~~~~~~~~l 572 (613)
T KOG0061|consen 496 NLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSG-GSSRCFLSGN--LCCESTGEDVL 572 (613)
T ss_pred chhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhc-cccccccCcC--CcccccHHHHH
Confidence 9999999999999999999999998 99999999999999999999999999997 4678874211 45666777778
Q ss_pred eeccC--CchHhHHHHHhhcC
Q 046786 586 KFVGL--NNKLLSVVMMAAMF 604 (604)
Q Consensus 586 ~~~~~--~~~~~~~~~l~~~~ 604 (604)
+..++ +++|+|.+++++|+
T Consensus 573 ~~~~~~~~~~~~~l~~l~~~~ 593 (613)
T KOG0061|consen 573 KQLGFEDSSFWLDLLVLLAFI 593 (613)
T ss_pred HhcCCcccccchhHHHHHHHH
Confidence 88887 48999999988763
No 3
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=3.9e-102 Score=881.39 Aligned_cols=552 Identities=33% Similarity=0.603 Sum_probs=477.0
Q ss_pred ccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-hccccEEEEecCCCCCC
Q 046786 46 DEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-EVKRRTGFVAQNNVFYP 124 (604)
Q Consensus 46 ~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-~~~~~i~yv~Q~~~l~~ 124 (604)
++++.+|+|+|+++++||+++|+||||||||||||+|+|+.+++. ..+|+|.+||++++. .+++.+|||+|+|.+++
T Consensus 35 ~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~--~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~ 112 (617)
T TIGR00955 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGV--KGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIP 112 (617)
T ss_pred cCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCC--cceeEEEECCEECCHHHHhhhceeeccccccCc
Confidence 346789999999999999999999999999999999999986431 247999999999864 56788999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCc-cCCCcCHHHHHHHHHHHHHhhCCCeEEEeC
Q 046786 125 HLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGR-LVRGLSGGERKRISIGQELLINPSLLFLDE 203 (604)
Q Consensus 125 ~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~-~~~~LSgGerqRvsia~~L~~~p~illLDE 203 (604)
.+||+||+.|++.++.|...++++++++++++++.+||.+++||.+|++ ..++|||||||||+||++|+++|++++|||
T Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDE 192 (617)
T TIGR00955 113 TLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDE 192 (617)
T ss_pred cCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeC
Confidence 9999999999999988877777788889999999999999999999975 378999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHHHHHHhCCCCCCCCCCh
Q 046786 204 PTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVINYFAGIGYVPSVAMNP 283 (604)
Q Consensus 204 PtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~~~f~~~g~~~p~~~np 283 (604)
||+|||+.++..+++.|++++++|+|||+++|||+.+++++||++++| ++|+++|+|+++++.+||+++|++||++.||
T Consensus 193 PtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll-~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ 271 (617)
T TIGR00955 193 PTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILM-AEGRVAYLGSPDQAVPFFSDLGHPCPENYNP 271 (617)
T ss_pred CCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEe-eCCeEEEECCHHHHHHHHHHcCCCCCCCCCh
Confidence 999999999999999999999889999999999998899999999999 8999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCccchHHHHHHHHHHHHhh-hhHHHHHhhhhcCCC-CCcccccccccCCCCCCCHHHHHHHHHHH
Q 046786 284 ADFLLDLANGVASGDPKENREAVKQTLISAYKSN-ISNKLKQEFEDGGDH-SLTTDSKNYKKTSKWSTTWWQHFSVLLRR 361 (604)
Q Consensus 284 adf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R 361 (604)
|||++|+++....+. .+.....+.+.+.|++. ..++..+........ .............++..+||+|+.+|++|
T Consensus 272 ad~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R 349 (617)
T TIGR00955 272 ADFYVQVLAVIPGSE--NESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKR 349 (617)
T ss_pred HHHHHHHhhcCcccc--cchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHHH
Confidence 999999987532221 11222334555566542 122222111111100 00000001112345678999999999999
Q ss_pred HHHH-hcCchhHHHHHHHHHHHHHHHHHHhcCCCC--cchhhHHHHHHHHHHHHhHHHHHHHHHhhHhhhHHHHHHhcCC
Q 046786 362 DLKE-RRHDTFDGLKIGQILFLSIITGLVWWQSST--DNIEDQVGLLFFYSRQAGFFPLFQALHTFPLERMMLEKERSSG 438 (604)
Q Consensus 362 ~~~~-~r~~~~~~~~~~~~i~~~li~G~~f~~~~~--~~~~~~~g~lf~~~~~~~~~~~~~~i~~~~~er~v~~rE~~~g 438 (604)
++++ +|++.++..|+++.+++|+++|++||+.+. .++++|.|++|+++++.+|.+++.+++.|+.||++|.||+.+|
T Consensus 350 ~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~ 429 (617)
T TIGR00955 350 SWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSG 429 (617)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 9987 677778889999999999999999999876 6899999999999998888888888999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 046786 439 MYRLSSYIMAKTAGDFVMELVLPTVFVIITYWMGGLKARVINFLSTLAATLYTALVAQSLGLAVGALVLNQRKAGTIATT 518 (604)
Q Consensus 439 ~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~F~~~~~~~~l~~~~~~s~~~~i~a~~~~~~~A~~~~~~ 518 (604)
+|++++|++|++++|+|+.++.+++|.+|+|||+|+++++.+||.|++++++..++++++|+++++++|+..+|+.++++
T Consensus 430 ~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~ 509 (617)
T TIGR00955 430 LYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPP 509 (617)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccC--CchhhHHhhhhcCHHHHHHHHHHHHhcCCCCccccCCCCCCCCccccCCcccceeccCC--chH
Q 046786 519 LMLTFLLTGGFFVQ--DVPAFISWLEYLSFTHYSYKLLLMSQYNPNDTYICASNSNSNATCLVGDFPRIKFVGLN--NKL 594 (604)
Q Consensus 519 ~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~y~~~~l~~nef~~~~~~~C~~~~~~~~~C~~~~~~~~~~~~~~--~~~ 594 (604)
+++++++|+||+++ +||+||+|++|+||++|++||++.|||++....+|.++ +.+..|...+...++.+|++ +.|
T Consensus 510 ~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~-~~~~~c~~~g~~~l~~~g~~~~~~~ 588 (617)
T TIGR00955 510 FVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSA-NTTGPCPSSGEVILETLSFRNADLY 588 (617)
T ss_pred HHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCc-CcCCCCCcChHHHHHhcCCCcccHH
Confidence 99999999999997 99999999999999999999999999988634579753 24456977666667777775 689
Q ss_pred hHHHHHhhc
Q 046786 595 LSVVMMAAM 603 (604)
Q Consensus 595 ~~~~~l~~~ 603 (604)
.++++|+++
T Consensus 589 ~~~~il~~~ 597 (617)
T TIGR00955 589 LDLIGLVIL 597 (617)
T ss_pred HHHHHHHHH
Confidence 999998875
No 4
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.2e-98 Score=912.21 Aligned_cols=553 Identities=25% Similarity=0.413 Sum_probs=465.5
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh---hccccEEEEecCCCCC
Q 046786 47 EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---EVKRRTGFVAQNNVFY 123 (604)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---~~~~~i~yv~Q~~~l~ 123 (604)
.++++|+|+|+.+++||+++|+||||||||||||+|+|+.++ ...+++|+|.+||++++. ..++.++||+|+|.++
T Consensus 72 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~-~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~ 150 (1394)
T TIGR00956 72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDG-FHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHF 150 (1394)
T ss_pred CcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCC-CCCCceeEEEECCEehHHHHhhcCceeEEeccccccC
Confidence 457799999999999999999999999999999999998742 123579999999998743 3456799999999999
Q ss_pred CCCCHHHHHHHHHHhcCCC----CCCHHHHHHH-HHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCe
Q 046786 124 PHLTVAETLVFTALLRLPN----SLKREEKVLH-AEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSL 198 (604)
Q Consensus 124 ~~lTv~e~l~f~~~~~~~~----~~~~~~~~~~-v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~i 198 (604)
+.+||+||+.|+++++.|. ..+++++.++ ++++++.+||++++||+||++.+++|||||||||+||++|+++|++
T Consensus 151 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~v 230 (1394)
T TIGR00956 151 PHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKI 230 (1394)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCE
Confidence 9999999999998887653 2344444444 5779999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHHHHHHhCCCCC
Q 046786 199 LFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVINYFAGIGYVP 277 (604)
Q Consensus 199 llLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~~~f~~~g~~~ 277 (604)
++|||||+|||+.++.++++.|++++++ |+|||+++|||+++++++||++++| ++|+++|+|+++++.+||+++|++|
T Consensus 231 lllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L-~~G~iv~~G~~~~~~~yF~~lG~~~ 309 (1394)
T TIGR00956 231 QCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVL-YEGYQIYFGPADKAKQYFEKMGFKC 309 (1394)
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE-eCCeEEEECCHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999974 9999999999988999999999999 8999999999999999999999999
Q ss_pred CCCCChHHHHHHhhcCCCCC---CCccchHHHHHHHHHHHHhh-hhHHHHHhhhhcCCC-------------CCcccccc
Q 046786 278 SVAMNPADFLLDLANGVASG---DPKENREAVKQTLISAYKSN-ISNKLKQEFEDGGDH-------------SLTTDSKN 340 (604)
Q Consensus 278 p~~~npadf~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------------~~~~~~~~ 340 (604)
|++.|||||++|+++++... ..+...+...+++.++|+++ ..++..++++...+. .....++.
T Consensus 310 p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (1394)
T TIGR00956 310 PDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKR 389 (1394)
T ss_pred CCCCChHHHHHhccChhhhhccccccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhccc
Confidence 99999999999998743211 10111223345677777653 222222222211000 00000011
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHHHHHHHHHhcCCCC--cchhhHHHHHHHHHHHHhHHHH
Q 046786 341 YKKTSKWSTTWWQHFSVLLRRDLKE-RRHDTFDGLKIGQILFLSIITGLVWWQSST--DNIEDQVGLLFFYSRQAGFFPL 417 (604)
Q Consensus 341 ~~~~~~~~~s~~~Q~~~l~~R~~~~-~r~~~~~~~~~~~~i~~~li~G~~f~~~~~--~~~~~~~g~lf~~~~~~~~~~~ 417 (604)
....+++..|+|+|+++|++|++++ +|++..+.+|+++.+++|+++|++||+++. +++++|.|++||++++.++.++
T Consensus 390 ~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~~~~~~ 469 (1394)
T TIGR00956 390 TRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSL 469 (1394)
T ss_pred ccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 2223467889999999999999987 677777889999999999999999999886 6899999999999998887765
Q ss_pred HHHHHhhHhhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCcchHHHHHHHHHHHHHHHHHHHH
Q 046786 418 FQALHTFPLERMMLEKERSSGMYRLSSYIMAKTAGDFVMELVLPTVFVIITYWMGGLKARVINFLSTLAATLYTALVAQS 497 (604)
Q Consensus 418 ~~~i~~~~~er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~F~~~~~~~~l~~~~~~s 497 (604)
..+..++.||+||+||+.+++|++++|++|++++|+|+.++.+++|++|+|||+||++++.+||+|+++++++.+++++
T Consensus 470 -~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~ 548 (1394)
T TIGR00956 470 -LEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSH 548 (1394)
T ss_pred -HHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 5677778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CchhhHHhhhhcCHHHHHHHHHHHHhcCCCCccccCC---C-C
Q 046786 498 LGLAVGALVLNQRKAGTIATTLMLTFLLTGGFFVQ--DVPAFISWLEYLSFTHYSYKLLLMSQYNPNDTYICAS---N-S 571 (604)
Q Consensus 498 ~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~y~~~~l~~nef~~~~~~~C~~---~-~ 571 (604)
+++++|+++|+..+|+.+++++++++++|+||++| +||+||+|++|+||++|||||++.|||++. .++|+. . +
T Consensus 549 ~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~-~~~C~~~~p~g~ 627 (1394)
T TIGR00956 549 LFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGR-RFECSQYVPSGG 627 (1394)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCC-cccccccccCCC
Confidence 99999999999999999999999999999999998 999999999999999999999999999985 789962 1 0
Q ss_pred ------CCCCccccCC----------cccce-eccC--CchHhHHHHHhhc
Q 046786 572 ------NSNATCLVGD----------FPRIK-FVGL--NNKLLSVVMMAAM 603 (604)
Q Consensus 572 ------~~~~~C~~~~----------~~~~~-~~~~--~~~~~~~~~l~~~ 603 (604)
..+..|...+ ...++ .+|+ ++.|.++++|+++
T Consensus 628 ~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~~w~n~gil~~~ 678 (1394)
T TIGR00956 628 GYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGF 678 (1394)
T ss_pred CCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccchhhHHHHHHHHH
Confidence 1345685321 12233 3454 3789999998876
No 5
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2.2e-96 Score=889.86 Aligned_cols=555 Identities=26% Similarity=0.448 Sum_probs=468.6
Q ss_pred hheeeeEEEEEecc---------ccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECC
Q 046786 32 MLKKVNMLVIIKNS---------DEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNG 102 (604)
Q Consensus 32 ~~~~~~~~~~~~~~---------~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G 102 (604)
.+.+.|+.+.++.+ .+++++|+|||++++|||++||+||||||||||||+|+|+.+++ +++|+|.+||
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g---~~~G~I~inG 943 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIRISG 943 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCC---cccceEEECC
Confidence 36677777776432 13457999999999999999999999999999999999997543 3589999999
Q ss_pred EeCCh-hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHH
Q 046786 103 KQFSA-EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGG 181 (604)
Q Consensus 103 ~~~~~-~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 181 (604)
++.+. ..++.+|||+|+|.+++.+||+|||.|++.++.|...+++++.++++++++.+||.+++|+++|+..+++||||
T Consensus 944 ~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgG 1023 (1470)
T PLN03140 944 FPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTE 1023 (1470)
T ss_pred ccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHH
Confidence 98764 45678999999999999999999999999888776666777778899999999999999999998778899999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEec-CCeEEEe
Q 046786 182 ERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSS-DGSSLYF 260 (604)
Q Consensus 182 erqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~-~G~~v~~ 260 (604)
|||||+||++|+++|++|||||||+|||+.++..+++.|++++++|+|||+++|||+.++++.||++++| + +|+++|+
T Consensus 1024 erkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL-~~gG~~v~~ 1102 (1470)
T PLN03140 1024 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM-KRGGQVIYS 1102 (1470)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEE-cCCCEEEEE
Confidence 9999999999999999999999999999999999999999999899999999999997889999999999 6 4899999
Q ss_pred cCh----hhHHHHHHhC-CC-CCCCCCChHHHHHHhhcCCCCCCCccchHHHHHHHHHHHHhh-hhHHHHHhhhhcCCCC
Q 046786 261 GKG----EDVINYFAGI-GY-VPSVAMNPADFLLDLANGVASGDPKENREAVKQTLISAYKSN-ISNKLKQEFEDGGDHS 333 (604)
Q Consensus 261 G~~----~~~~~~f~~~-g~-~~p~~~npadf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 333 (604)
|++ +++.+||+++ |+ .||+..|||||++|+++..... ....++++.|+++ .+++.++..+......
T Consensus 1103 G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~-------~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~ 1175 (1470)
T PLN03140 1103 GPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV-------KLGIDFAEHYKSSSLYQRNKALVKELSTPP 1175 (1470)
T ss_pred CCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc-------cccchHHHHHhccHHHHHHHHHHHHhccCC
Confidence 996 5899999998 56 4999999999999997632111 1123466667653 2223332222211111
Q ss_pred CcccccccccCCCCCCCHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHHHHHHHHHhcCCCC-----cchhhHHHHHHH
Q 046786 334 LTTDSKNYKKTSKWSTTWWQHFSVLLRRDLKE-RRHDTFDGLKIGQILFLSIITGLVWWQSST-----DNIEDQVGLLFF 407 (604)
Q Consensus 334 ~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~-~r~~~~~~~~~~~~i~~~li~G~~f~~~~~-----~~~~~~~g~lf~ 407 (604)
.. .+......++.+++|+|+++|++|++++ ||++.+..+|+++.+++|+++|++||+++. .+++++.|++|+
T Consensus 1176 ~~--~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~ 1253 (1470)
T PLN03140 1176 PG--ASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYA 1253 (1470)
T ss_pred CC--ccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHH
Confidence 00 0111123568899999999999999987 788889999999999999999999999875 357788999999
Q ss_pred HHHHHhHHHHHHHHHhhHhhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCcchHHHHHHHHHH
Q 046786 408 YSRQAGFFPLFQALHTFPLERMMLEKERSSGMYRLSSYIMAKTAGDFVMELVLPTVFVIITYWMGGLKARVINFLSTLAA 487 (604)
Q Consensus 408 ~~~~~~~~~~~~~i~~~~~er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~F~~~~~~ 487 (604)
++++.++..+.+.++.|+.||++|+|||++|+|++.+|++|++++|+|+.++.+++|.+|+|||+||++++.+||+|+++
T Consensus 1254 ~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~ 1333 (1470)
T PLN03140 1254 AVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFI 1333 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Confidence 99988887777788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CchhhHHhhhhcCHHHHHHHHHHHHhcCCCCcc
Q 046786 488 TLYTALVAQSLGLAVGALVLNQRKAGTIATTLMLTFLLTGGFFVQ--DVPAFISWLEYLSFTHYSYKLLLMSQYNPNDTY 565 (604)
Q Consensus 488 ~~l~~~~~~s~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~y~~~~l~~nef~~~~~~ 565 (604)
++++.++++++|+++++++|+.++|..++++++.++++|+||++| +||.||+|++|+||++|++++++.|||++. +.
T Consensus 1334 ~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~-~~ 1412 (1470)
T PLN03140 1334 SFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDV-ED 1412 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCC-CC
Confidence 999999999999999999999999999999999999999999998 999999999999999999999999999875 55
Q ss_pred ccCCCC-CCCCccccCCcccceeccCC--chHhHHHHHhhc
Q 046786 566 ICASNS-NSNATCLVGDFPRIKFVGLN--NKLLSVVMMAAM 603 (604)
Q Consensus 566 ~C~~~~-~~~~~C~~~~~~~~~~~~~~--~~~~~~~~l~~~ 603 (604)
.|+... +.+..|. .-..+.+|++ ..|.++++++++
T Consensus 1413 ~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~il~~~ 1450 (1470)
T PLN03140 1413 TIKVPGGAPDPTIK---WYIQDHYGYDPDFMGPVAAVLVGF 1450 (1470)
T ss_pred cccCCCCCCCCcHH---HHHHHhcCcCcccccchhhhHHHH
Confidence 554210 1112221 0023566764 578888887765
No 6
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=9.5e-97 Score=892.99 Aligned_cols=545 Identities=24% Similarity=0.394 Sum_probs=454.9
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-hccccEEEEecCCCCCCCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-EVKRRTGFVAQNNVFYPHL 126 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-~~~~~i~yv~Q~~~l~~~l 126 (604)
+++||+|+|+.++|||+++|+||||||||||||+|+|++++.. ..+|+|.+||+++++ ..++.++||+|+|.+++.+
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~--~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSL--KVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCC--cceeEEEECCEechhhcccceeEEecccccCCCcC
Confidence 4679999999999999999999999999999999999986321 138999999998854 3467899999999999999
Q ss_pred CHHHHHHHHHHhcCCC-------CCCHHHH------------------------HHHHHHHHHHcCCCccccccccCccC
Q 046786 127 TVAETLVFTALLRLPN-------SLKREEK------------------------VLHAEAVINQLGLARCRNSIIGGRLV 175 (604)
Q Consensus 127 Tv~e~l~f~~~~~~~~-------~~~~~~~------------------------~~~v~~~l~~lgL~~~~~~~vg~~~~ 175 (604)
||+||+.|+++++.+. ..+++++ +..++++++.+||++++||.||++.+
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 9999999998876321 1112221 12357899999999999999999999
Q ss_pred CCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecC
Q 046786 176 RGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSD 254 (604)
Q Consensus 176 ~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~ 254 (604)
++|||||||||+||++|+.+|++++|||||+|||+.++.++++.|+++++ .|+|||+++|||+++++++||++++| ++
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL-~~ 413 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILL-SE 413 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEe-eC
Confidence 99999999999999999999999999999999999999999999999987 59999999999998999999999999 89
Q ss_pred CeEEEecChhhHHHHHHhCCCCCCCCCChHHHHHHhhcCCCCCCC--ccchH---HHHHHHHHHHHhh-hhHHHHHhhhh
Q 046786 255 GSSLYFGKGEDVINYFAGIGYVPSVAMNPADFLLDLANGVASGDP--KENRE---AVKQTLISAYKSN-ISNKLKQEFED 328 (604)
Q Consensus 255 G~~v~~G~~~~~~~~f~~~g~~~p~~~npadf~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~ 328 (604)
|+++|+|+++++.+||+++||.||+++|||||++|+++....... ....+ ...++++++|++. ..+++.++++.
T Consensus 414 G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 493 (1470)
T PLN03140 414 GQIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSV 493 (1470)
T ss_pred ceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999875321110 00000 1245677788763 22333333322
Q ss_pred cCCCCCcccccccccCCCCCCCHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHHHHHHHHHhcCCCC-----cchhhHH
Q 046786 329 GGDHSLTTDSKNYKKTSKWSTTWWQHFSVLLRRDLKE-RRHDTFDGLKIGQILFLSIITGLVWWQSST-----DNIEDQV 402 (604)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~-~r~~~~~~~~~~~~i~~~li~G~~f~~~~~-----~~~~~~~ 402 (604)
..+... ..+.....+++..++|.|++.|++|++++ +|++..+..|+++.+++|+++|++||+++. .+.+.+.
T Consensus 494 ~~~~~~--~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~ 571 (1470)
T PLN03140 494 PFDKSQ--SHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYI 571 (1470)
T ss_pred hhhhhh--cccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHH
Confidence 111000 00111123468899999999999999988 566667789999999999999999999863 3456788
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhHhhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCcchHHHHH
Q 046786 403 GLLFFYSRQAGFFPLFQALHTFPLERMMLEKERSSGMYRLSSYIMAKTAGDFVMELVLPTVFVIITYWMGGLKARVINFL 482 (604)
Q Consensus 403 g~lf~~~~~~~~~~~~~~i~~~~~er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~F~ 482 (604)
|++||++++.++.+ +..+..++.||+||+|||..++|++++|++|++++++|+.++.+++|++|+|||+||++++++||
T Consensus 572 g~lff~~l~~~~~~-~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff 650 (1470)
T PLN03140 572 GALLFSMIINMFNG-FAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFF 650 (1470)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHH
Confidence 99999888876544 57789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CchhhHHhhhhcCHHHHHHHHHHHHhcC
Q 046786 483 STLAATLYTALVAQSLGLAVGALVLNQRKAGTIATTLMLTFLLTGGFFVQ--DVPAFISWLEYLSFTHYSYKLLLMSQYN 560 (604)
Q Consensus 483 ~~~~~~~l~~~~~~s~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~y~~~~l~~nef~ 560 (604)
.|+++++++.++++++++++++++++..+|+.+++++++++++|+||++| +||+||+|++|+||++|||||++.|||.
T Consensus 651 ~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~ 730 (1470)
T PLN03140 651 KQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMF 730 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999998 9999999999999999999999999998
Q ss_pred CCCccc-cCCCCCCCCccccCCcccceeccCC----chHhHHHHHhhc
Q 046786 561 PNDTYI-CASNSNSNATCLVGDFPRIKFVGLN----NKLLSVVMMAAM 603 (604)
Q Consensus 561 ~~~~~~-C~~~~~~~~~C~~~~~~~~~~~~~~----~~~~~~~~l~~~ 603 (604)
+. .+. |.. .+ .|...+...++.+|+. ..|.++++|+++
T Consensus 731 ~~-~~~~~~~---~~-~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~ 773 (1470)
T PLN03140 731 AP-RWMNKMA---SD-NSTRLGTAVLNIFDVFTDKNWYWIGVGALLGF 773 (1470)
T ss_pred Cc-cccCccc---CC-CCcccHHHHHHhcCcCccccchhhhHHHHHHH
Confidence 64 333 211 01 1233444466777764 358888888775
No 7
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=6.5e-96 Score=888.42 Aligned_cols=559 Identities=28% Similarity=0.438 Sum_probs=470.2
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccc
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKR 111 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~ 111 (604)
++++.|+.+.++.+.+++.+|+|||+++++||++||+||||||||||||+|+|+.+++ .+++|+|.+||++++..+++
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g--~~~~G~I~i~G~~~~~~~~~ 836 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTG--VITGGDRLVNGRPLDSSFQR 836 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCC--CcceeEEEECCEECChhhhc
Confidence 3567777776654445578999999999999999999999999999999999998643 25689999999998766788
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHH
Q 046786 112 RTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQE 191 (604)
Q Consensus 112 ~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~ 191 (604)
.+|||+|+|.+++.+||+||+.|++.++.|...+++++.++++++++.+||.+++|+.+|+. ..+|||||||||+||++
T Consensus 837 ~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~-~~~LSgGqrqRl~Ia~a 915 (1394)
T TIGR00956 837 SIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVP-GEGLNVEQRKRLTIGVE 915 (1394)
T ss_pred ceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCC-CCCCCHHHhhHHHHHHH
Confidence 89999999999999999999999998887766677777788999999999999999999853 44899999999999999
Q ss_pred HhhCCC-eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCC-eEEEecCh----hh
Q 046786 192 LLINPS-LLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDG-SSLYFGKG----ED 265 (604)
Q Consensus 192 L~~~p~-illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G-~~v~~G~~----~~ 265 (604)
|+.+|+ ||||||||+|||+.++..+++.|++++++|+|||+++|||+..+++.||++++| ++| +++|+|++ ++
T Consensus 916 L~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L-~~GG~iv~~G~~~~~~~~ 994 (1394)
T TIGR00956 916 LVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLL-QKGGQTVYFGDLGENSHT 994 (1394)
T ss_pred HHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEE-cCCCEEEEECCcccccch
Confidence 999997 999999999999999999999999999889999999999997788899999999 665 99999997 57
Q ss_pred HHHHHHhCCC-CCCCCCChHHHHHHhhcCCCCCCCccchHHHHHHHHHHHHhh-hhHHHHHhhhhcCCCCC-cccccccc
Q 046786 266 VINYFAGIGY-VPSVAMNPADFLLDLANGVASGDPKENREAVKQTLISAYKSN-ISNKLKQEFEDGGDHSL-TTDSKNYK 342 (604)
Q Consensus 266 ~~~~f~~~g~-~~p~~~npadf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~ 342 (604)
+.+||++.|+ +||++.|||||++|+++...... ..+.+.+.|+.+ ..+...++++....... ........
T Consensus 995 ~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~-------~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1394)
T TIGR00956 995 IINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAH-------ANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPD 1067 (1394)
T ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccc-------hhccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccc
Confidence 8999999996 99999999999999987422111 112345556542 12222222221111100 00000111
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHHHHHHHHHhcCCCC--cchhhHHHHHHHHHHHHhHHHHHH
Q 046786 343 KTSKWSTTWWQHFSVLLRRDLKE-RRHDTFDGLKIGQILFLSIITGLVWWQSST--DNIEDQVGLLFFYSRQAGFFPLFQ 419 (604)
Q Consensus 343 ~~~~~~~s~~~Q~~~l~~R~~~~-~r~~~~~~~~~~~~i~~~li~G~~f~~~~~--~~~~~~~g~lf~~~~~~~~~~~~~ 419 (604)
...+++++||+|+++|++|++++ ||++.+...|+++++++|+++|++||+++. .++++|.|++|+++++..+. ...
T Consensus 1068 ~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~~~~~~-~~~ 1146 (1394)
T TIGR00956 1068 ALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPL-IQQ 1146 (1394)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 22467899999999999999997 788888999999999999999999999987 68999999999988766544 456
Q ss_pred HHHhhHhhhHHH-HHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCcchHHH-------HHHHHHHHHHH
Q 046786 420 ALHTFPLERMML-EKERSSGMYRLSSYIMAKTAGDFVMELVLPTVFVIITYWMGGLKARVIN-------FLSTLAATLYT 491 (604)
Q Consensus 420 ~i~~~~~er~v~-~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~-------F~~~~~~~~l~ 491 (604)
+++.|+.||.+| +||+.+|+|++.+|++|++++|+|+.++.+++|.+|+|||+|+++++.. |++|++++++.
T Consensus 1147 ~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~ 1226 (1394)
T TIGR00956 1147 YLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMF 1226 (1394)
T ss_pred hhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHH
Confidence 788899998885 9999999999999999999999999999999999999999999988765 99999999999
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CchhhHHhhhhcCHHHHHHHHHHHHhcCCCCccccCC
Q 046786 492 ALVAQSLGLAVGALVLNQRKAGTIATTLMLTFLLTGGFFVQ--DVPAFISWLEYLSFTHYSYKLLLMSQYNPNDTYICAS 569 (604)
Q Consensus 492 ~~~~~s~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~y~~~~l~~nef~~~~~~~C~~ 569 (604)
.++++++|+++++++|+..+|+.+++++++++++|+||+++ +||.||+|++|+||++|++++++.|||++. +++|.+
T Consensus 1227 ~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~-~~~C~~ 1305 (1394)
T TIGR00956 1227 FLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADV-PVTCKV 1305 (1394)
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCC-eeecCc
Confidence 99999999999999999999999999999999999999998 999999999999999999999999999975 889975
Q ss_pred C------CCCCCccc---------------------------c-CCcccceeccC--CchHhHHHHHhhc
Q 046786 570 N------SNSNATCL---------------------------V-GDFPRIKFVGL--NNKLLSVVMMAAM 603 (604)
Q Consensus 570 ~------~~~~~~C~---------------------------~-~~~~~~~~~~~--~~~~~~~~~l~~~ 603 (604)
+ +|++++|. + .+.+.++.+|+ ++.|.|+++++++
T Consensus 1306 ~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~~w~~~~i~~~~ 1375 (1394)
T TIGR00956 1306 KELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAF 1375 (1394)
T ss_pred cccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccccccchhhhhHH
Confidence 2 44555663 2 12223444454 5789999998775
No 8
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.5e-98 Score=853.44 Aligned_cols=533 Identities=31% Similarity=0.486 Sum_probs=474.0
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCC-hhccc
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS-AEVKR 111 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~-~~~~~ 111 (604)
+-++|+.+..+.+++++++|+|||+.++||.++||||+||||||||||+|+||...|.+ +|+|++||.+.+ +.++|
T Consensus 788 ~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I---~Gdi~i~G~p~~q~tF~R 864 (1391)
T KOG0065|consen 788 FYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYI---EGDILISGFPKDQETFAR 864 (1391)
T ss_pred EEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceE---EeEEEECCeeCchhhhcc
Confidence 45667777776667889999999999999999999999999999999999999875544 999999999998 67899
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHH
Q 046786 112 RTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQE 191 (604)
Q Consensus 112 ~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~ 191 (604)
.+|||.|+|.|.|.+||+|.|.|+|.+|+|...+.+++.+.|+++++.|+|++++|.+||... +|||.+||||++||+|
T Consensus 865 ~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVE 943 (1391)
T KOG0065|consen 865 VSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVE 943 (1391)
T ss_pred ccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999776 9999999999999999
Q ss_pred HhhCC-CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChh----hH
Q 046786 192 LLINP-SLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGE----DV 266 (604)
Q Consensus 192 L~~~p-~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~----~~ 266 (604)
|+.+| .||||||||||||+.+|..|++.+|++++.|+||+||+|||+.++++.||++++|.++|++||+|+.. .+
T Consensus 944 LvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~l 1023 (1391)
T KOG0065|consen 944 LVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKL 1023 (1391)
T ss_pred EecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHH
Confidence 99999 89999999999999999999999999999999999999999999999999999998899999999975 45
Q ss_pred HHHHHhCC-CCCCCCCChHHHHHHhhcCCCCCCCccchHHHHHHHHHHHHh-hhhHHHHHhhhhcCCCCCcccccccccC
Q 046786 267 INYFAGIG-YVPSVAMNPADFLLDLANGVASGDPKENREAVKQTLISAYKS-NISNKLKQEFEDGGDHSLTTDSKNYKKT 344 (604)
Q Consensus 267 ~~~f~~~g-~~~p~~~npadf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (604)
++||+++| .+||...|||||++|+++..... +...++++.|++ ..+++.+++++........ ........
T Consensus 1024 i~YFes~~~~~~~~~~NPA~~mLevi~~~~~~-------~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~-~~~~~~~~ 1095 (1391)
T KOG0065|consen 1024 IEYFESIGGVKCISDENPAEWMLEVIGAGAEA-------SLSVDFAEIWKNSEEYKRNKELVKELSQPPPG-FSTDLEFK 1095 (1391)
T ss_pred HHHHHhcCCccCCCCCChHHHHHhhccccccc-------ccCccHHHHHhccHHHHHHHHHHHHHhcCCcc-CCcccccc
Confidence 78999987 78999899999999998642211 122357778876 3444455555443333222 11223345
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHHHHHHHHHhcCCCC--cchhhHHHHHHHHHHHHhHHHHHHHH
Q 046786 345 SKWSTTWWQHFSVLLRRDLKE-RRHDTFDGLKIGQILFLSIITGLVWWQSST--DNIEDQVGLLFFYSRQAGFFPLFQAL 421 (604)
Q Consensus 345 ~~~~~s~~~Q~~~l~~R~~~~-~r~~~~~~~~~~~~i~~~li~G~~f~~~~~--~~~~~~~g~lf~~~~~~~~~~~~~~i 421 (604)
.+++.|+|.|++.+++|++.. ||+|.++.+|++..++.|+++|+.||+.+. .++|+++|++|+.+++.+........
T Consensus 1096 ~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~~~~~~~~ 1175 (1391)
T KOG0065|consen 1096 TRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFSGPNNNQLQQ 1175 (1391)
T ss_pred cccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 678999999999999999986 888999999999999999999999999987 68999999999998876544333345
Q ss_pred HhhHhhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 046786 422 HTFPLERMMLEKERSSGMYRLSSYIMAKTAGDFVMELVLPTVFVIITYWMGGLKARVINFLSTLAATLYTALVAQSLGLA 501 (604)
Q Consensus 422 ~~~~~er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~F~~~~~~~~l~~~~~~s~~~~ 501 (604)
+.+..||.+++||+++|+|++.+|++|++++|+|+.++++++|.+++|+++|+..++.+|+.|++.+++..++.+++|++
T Consensus 1176 ~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm 1255 (1391)
T KOG0065|consen 1176 PAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMM 1255 (1391)
T ss_pred hHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CchhhHHhhhhcCHHHHHHHHHHHHhcCCCCccccCC------CCCC
Q 046786 502 VGALVLNQRKAGTIATTLMLTFLLTGGFFVQ--DVPAFISWLEYLSFTHYSYKLLLMSQYNPNDTYICAS------NSNS 573 (604)
Q Consensus 502 i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~y~~~~l~~nef~~~~~~~C~~------~~~~ 573 (604)
+.+++||.++|..+.+.+...+.+|+|+++| .||.||+|++|+||+.|-.++++..++++. +..|.. ++|.
T Consensus 1256 ~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~-~v~c~~~e~~~~~pp~ 1334 (1391)
T KOG0065|consen 1256 LVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDV-EVTCEDSEMNYFDPPS 1334 (1391)
T ss_pred HHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhCCC-ceeeecCCccccCCCC
Confidence 9999999999999999999999999999998 899999999999999999999999999974 888963 3556
Q ss_pred CCccc
Q 046786 574 NATCL 578 (604)
Q Consensus 574 ~~~C~ 578 (604)
+..|-
T Consensus 1335 g~tcg 1339 (1391)
T KOG0065|consen 1335 GQTCG 1339 (1391)
T ss_pred CcCHH
Confidence 77784
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.6e-89 Score=784.46 Aligned_cols=550 Identities=29% Similarity=0.488 Sum_probs=467.2
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhc-cccEEEEecCCCCCCC
Q 046786 47 EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEV-KRRTGFVAQNNVFYPH 125 (604)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~-~~~i~yv~Q~~~l~~~ 125 (604)
.+.++|+|+|+.++||+++.++||+||||||||++|+|.+.... ...|+|.+||.+.++.. ++.++|++|+|.|+|.
T Consensus 126 ~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~--~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~ 203 (1391)
T KOG0065|consen 126 KKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFL--KSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPE 203 (1391)
T ss_pred ccceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccc--cCCCceeECCCcccccccCceEEeccccccccce
Confidence 34579999999999999999999999999999999999876322 23679999999987633 5789999999999999
Q ss_pred CCHHHHHHHHHHhcCCCC----CCHHHHHH-HHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEE
Q 046786 126 LTVAETLVFTALLRLPNS----LKREEKVL-HAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLF 200 (604)
Q Consensus 126 lTv~e~l~f~~~~~~~~~----~~~~~~~~-~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~ill 200 (604)
|||+|+|.|+++++.|.. .+++++.+ ..+.+++.+||++|+||+|||...||+||||||||++|.+++.+|++++
T Consensus 204 lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~ 283 (1391)
T KOG0065|consen 204 LTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILF 283 (1391)
T ss_pred eEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceee
Confidence 999999999999998743 23333332 5688999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHHHHHHhCCCCCCC
Q 046786 201 LDEPTSGLDSTMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVINYFAGIGYVPSV 279 (604)
Q Consensus 201 LDEPtsgLD~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~~~f~~~g~~~p~ 279 (604)
+||+|+|||+.++.++++.||++++ .+.|+++++|||+++++++||++++| ++|+++|+||.+++++||+++||.||+
T Consensus 284 ~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL-~eG~~iy~Gp~d~~~~yFe~~Gf~cP~ 362 (1391)
T KOG0065|consen 284 WDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILL-SEGYQIYQGPRDEVLPYFEDMGFKCPP 362 (1391)
T ss_pred eecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeee-eccceEEeccHHHHHHHHHhcCccCCC
Confidence 9999999999999999999999998 48999999999999999999999999 899999999999999999999999999
Q ss_pred CCChHHHHHHhhcCCCCCCCc--c--c-hHHHHHHHHHHHHh-hhhHHHHHhhhhcCCCCCcccccccccCCCCCCCHHH
Q 046786 280 AMNPADFLLDLANGVASGDPK--E--N-REAVKQTLISAYKS-NISNKLKQEFEDGGDHSLTTDSKNYKKTSKWSTTWWQ 353 (604)
Q Consensus 280 ~~npadf~~~~~~~~~~~~~~--~--~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 353 (604)
++++|||+.++++.....+.. + . ......++.+.|.+ +...++..+++...+.. ..++.....+++..++|.
T Consensus 363 r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~--k~~~~al~s~~y~v~~~~ 440 (1391)
T KOG0065|consen 363 RKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKS--KKHKAALVSSKYSVPYWE 440 (1391)
T ss_pred ccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhh--hccchhhcCCceeccHHH
Confidence 999999999999843221111 1 1 11122556666665 23334443333221111 112233446789999999
Q ss_pred HHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHHHHhcCCC-C--cchhhHHHHHHHHHHHHhHHHHHHHHHhhHhhhH
Q 046786 354 HFSVLLRRDLKERRHD-TFDGLKIGQILFLSIITGLVWWQSS-T--DNIEDQVGLLFFYSRQAGFFPLFQALHTFPLERM 429 (604)
Q Consensus 354 Q~~~l~~R~~~~~r~~-~~~~~~~~~~i~~~li~G~~f~~~~-~--~~~~~~~g~lf~~~~~~~~~~~~~~i~~~~~er~ 429 (604)
|+++|++|.+...+++ .++..++++.+++|+++|++|++.+ . .+.+.|.|++||.+++.++.++ +.+....+.||
T Consensus 441 qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~l-aEi~~~~~~~p 519 (1391)
T KOG0065|consen 441 QVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGL-AEIALTFQRLP 519 (1391)
T ss_pred HHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhH-HHHHHHHhhcc
Confidence 9999999999875544 5667899999999999999999988 4 5789999999999998776654 66777779999
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q 046786 430 MLEKERSSGMYRLSSYIMAKTAGDFVMELVLPTVFVIITYWMGGLKARVINFLSTLAATLYTALVAQSLGLAVGALVLNQ 509 (604)
Q Consensus 430 v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~F~~~~~~~~l~~~~~~s~~~~i~a~~~~~ 509 (604)
||+|||...+|+++||.++.++.++|+.++.+++|.+|+||++||++++++||.++++++++++|+.++++++++++++.
T Consensus 520 v~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~ 599 (1391)
T KOG0065|consen 520 VFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTL 599 (1391)
T ss_pred hHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccC--CchhhHHhhhhcCHHHHHHHHHHHHhcCCCCccccCCC-------CCCCCcccc-
Q 046786 510 RKAGTIATTLMLTFLLTGGFFVQ--DVPAFISWLEYLSFTHYSYKLLLMSQYNPNDTYICASN-------SNSNATCLV- 579 (604)
Q Consensus 510 ~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~y~~~~l~~nef~~~~~~~C~~~-------~~~~~~C~~- 579 (604)
..|+.++++.++.+.+++||+|| +||+||+|++|+||+.||+|+++.|||+++ .++|++. +.++..|..
T Consensus 600 ~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~-~~~c~p~gp~y~n~~~~~~~c~~~ 678 (1391)
T KOG0065|consen 600 SIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGR-RWPCSPSGPAYDNISIENKVCAAT 678 (1391)
T ss_pred HHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcc-cCCCCCCCCcccccccccccchhh
Confidence 99999999999999999999998 999999999999999999999999999985 8999832 224566743
Q ss_pred CCcccceec---c---------CCchHhHHHHHhhc
Q 046786 580 GDFPRIKFV---G---------LNNKLLSVVMMAAM 603 (604)
Q Consensus 580 ~~~~~~~~~---~---------~~~~~~~~~~l~~~ 603 (604)
+..++...+ | .+..|.++.+++++
T Consensus 679 ~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf 714 (1391)
T KOG0065|consen 679 GATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGF 714 (1391)
T ss_pred ccccCceEEecccccccccccccceeEeehhHHHHH
Confidence 223332222 1 23579999998875
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.7e-53 Score=404.35 Aligned_cols=216 Identities=31% Similarity=0.542 Sum_probs=194.6
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-----
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----- 107 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----- 107 (604)
++..|+. +.+++..+|+|||+++++||+++|+||||||||||||||+++.+ |++|+|.++|+++..
T Consensus 3 i~i~~l~----K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~-----~~~G~I~i~g~~~~~~~~~~ 73 (240)
T COG1126 3 IEIKNLS----KSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE-----PDSGSITVDGEDVGDKKDIL 73 (240)
T ss_pred EEEEeee----EEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC-----CCCceEEECCEeccchhhHH
Confidence 4555543 34567889999999999999999999999999999999999985 689999999987731
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHH
Q 046786 108 EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRIS 187 (604)
Q Consensus 108 ~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvs 187 (604)
..|+++|+|+|+..|||++||.||+.++...- ...++++.++++.++|+.+||.+.+| .++..|||||||||+
T Consensus 74 ~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~-----~yP~qLSGGQqQRVA 146 (240)
T COG1126 74 KLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKAD-----AYPAQLSGGQQQRVA 146 (240)
T ss_pred HHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhh-----hCccccCcHHHHHHH
Confidence 57889999999999999999999999875432 35678889999999999999999988 567799999999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhH
Q 046786 188 IGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266 (604)
Q Consensus 188 ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~ 266 (604)
|||||+.+|+++++|||||+|||....++++.+++||++|.|.|++||+.. -..+.+||+++| ++|+++..|+|++.
T Consensus 147 IARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~-FAr~VadrviFm-d~G~iie~g~p~~~ 223 (240)
T COG1126 147 IARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMG-FAREVADRVIFM-DQGKIIEEGPPEEF 223 (240)
T ss_pred HHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhH-HHHHhhheEEEe-eCCEEEEecCHHHH
Confidence 999999999999999999999999999999999999999999999999987 467889999999 89999999988765
No 11
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.8e-50 Score=401.05 Aligned_cols=220 Identities=26% Similarity=0.405 Sum_probs=196.6
Q ss_pred heeeeEEEEEecc-ccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 33 LKKVNMLVIIKNS-DEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 33 ~~~~~~~~~~~~~-~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
++..+++..+..+ .+...+|+|||++|++||+++|+|+||||||||+|+|.++.+ |++|+|.++|+++..
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~-----PtsG~v~v~G~di~~l~~~ 76 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER-----PTSGSVFVDGQDLTALSEA 76 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCCceEEEcCEecccCChH
Confidence 4445555444432 234579999999999999999999999999999999999985 789999999988742
Q ss_pred ---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHH
Q 046786 108 ---EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERK 184 (604)
Q Consensus 108 ---~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 184 (604)
..|++||++||+..|+...||.||+.|+.++. ..++++.+++|.++|+.+||++.+| +++.+|||||||
T Consensus 77 ~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~-----~yP~qLSGGQKQ 148 (339)
T COG1135 77 ELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKAD-----RYPAQLSGGQKQ 148 (339)
T ss_pred HHHHHHhhccEEeccccccccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhc-----cCchhcCcchhh
Confidence 46789999999999999999999999998775 3678899999999999999999887 667899999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecCh
Q 046786 185 RISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKG 263 (604)
Q Consensus 185 Rvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~ 263 (604)
||+|||||+++|+||++|||||+|||.++..|+++|+++.+ .|.||+++||++. .+.+.|||+.+| ++|+++..|+.
T Consensus 149 RVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm-~~G~lvE~G~v 226 (339)
T COG1135 149 RVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVL-DQGRLVEEGTV 226 (339)
T ss_pred HHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEe-eCCEEEEeccH
Confidence 99999999999999999999999999999999999999986 4999999999975 789999999999 89999999998
Q ss_pred hhHH
Q 046786 264 EDVI 267 (604)
Q Consensus 264 ~~~~ 267 (604)
.++.
T Consensus 227 ~~vF 230 (339)
T COG1135 227 SEVF 230 (339)
T ss_pred HHhh
Confidence 7763
No 12
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.9e-49 Score=408.34 Aligned_cols=212 Identities=42% Similarity=0.627 Sum_probs=192.3
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh---hccccEEEEecCCCCCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---EVKRRTGFVAQNNVFYP 124 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---~~~~~i~yv~Q~~~l~~ 124 (604)
++.+|+||||++++||++|++||||||||||+|+|+|+.+ |++|+|.++|.++.. ..++++||+||++.+++
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~-----p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~ 91 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK-----PTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYP 91 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEEcCEeCccCHHHHHhheEEEccCCCCCc
Confidence 5789999999999999999999999999999999999986 579999999998854 57889999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 046786 125 HLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEP 204 (604)
Q Consensus 125 ~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEP 204 (604)
.+||+|+|.|.+.++.+. .+..+++++++++.+||.+..+ +++++||+|||||++||+||+++|+++|||||
T Consensus 92 ~lT~~e~l~~~~~l~~~~---~~~~~~~~~~~l~~~~L~~~~~-----~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEP 163 (293)
T COG1131 92 ELTVRENLEFFARLYGLS---KEEAEERIEELLELFGLEDKAN-----KKVRTLSGGMKQRLSIALALLHDPELLILDEP 163 (293)
T ss_pred cccHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHcCCchhhC-----cchhhcCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 999999999999987533 2455678999999999998544 55679999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHHHHHHhCC
Q 046786 205 TSGLDSTMAKKILVSLSKLAEGG-RTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVINYFAGIG 274 (604)
Q Consensus 205 tsgLD~~~~~~i~~~l~~la~~g-~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~~~f~~~g 274 (604)
|+||||.++.++.+.|++++++| +||++|||++. ++..+||++++| ++|++++.|+++++...+....
T Consensus 164 t~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il-~~G~~~~~g~~~~l~~~~~~~~ 232 (293)
T COG1131 164 TSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIIL-NDGKIIAEGTPEELKEKFGGKG 232 (293)
T ss_pred CcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEE-eCCEEEEeCCHHHHHHhhccCc
Confidence 99999999999999999999987 89999999986 688889999999 9999999999999877766543
No 13
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-49 Score=384.97 Aligned_cols=219 Identities=27% Similarity=0.508 Sum_probs=196.2
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~ 108 (604)
++..|++. .++++.+++|+|++|++||+++++|||||||||+||+|.++.+ |++|+|++||+++.+ +
T Consensus 2 I~~~nvsk----~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie-----pt~G~I~i~g~~i~~~d~~~ 72 (309)
T COG1125 2 IEFENVSK----RYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE-----PTSGEILIDGEDISDLDPVE 72 (309)
T ss_pred ceeeeeeh----hcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC-----CCCceEEECCeecccCCHHH
Confidence 44445433 3457889999999999999999999999999999999999985 689999999999864 6
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISI 188 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsi 188 (604)
+|+.||||-|...|||++||.||+.+-..+. .+++++.+++++++++.+||+... ..++++++|||||+|||.+
T Consensus 73 LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~---~~~RyP~eLSGGQQQRVGv 146 (309)
T COG1125 73 LRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSE---YADRYPHELSGGQQQRVGV 146 (309)
T ss_pred HHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHH---HhhcCchhcCcchhhHHHH
Confidence 8999999999999999999999999876664 567888889999999999997521 1238899999999999999
Q ss_pred HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 189 GQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 189 a~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
||||+.+|++|++|||+++|||.++..+.+.++++.++ |+|||++|||.. +.+.+.||+.+| ++|+++-+++|++++
T Consensus 147 ~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm-~~G~i~Q~~~P~~il 224 (309)
T COG1125 147 ARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVM-DAGEIVQYDTPDEIL 224 (309)
T ss_pred HHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEe-cCCeEEEeCCHHHHH
Confidence 99999999999999999999999999999999999875 999999999975 788999999999 899999999999987
Q ss_pred H
Q 046786 268 N 268 (604)
Q Consensus 268 ~ 268 (604)
.
T Consensus 225 ~ 225 (309)
T COG1125 225 A 225 (309)
T ss_pred h
Confidence 5
No 14
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=7.6e-49 Score=384.84 Aligned_cols=208 Identities=36% Similarity=0.548 Sum_probs=179.7
Q ss_pred eeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh------
Q 046786 34 KKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA------ 107 (604)
Q Consensus 34 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~------ 107 (604)
+..|+...+........+|+++|++|++||+++|+|||||||||||++|+|+.+ |++|.|.++|+++..
T Consensus 3 ~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~-----pt~G~v~i~g~d~~~l~~~~~ 77 (226)
T COG1136 3 ELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK-----PTSGEVLINGKDLTKLSEKEL 77 (226)
T ss_pred EEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCceEEECCEEcCcCCHHHH
Confidence 345655555444444689999999999999999999999999999999999985 689999999988752
Q ss_pred -hc-cccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHH
Q 046786 108 -EV-KRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKR 185 (604)
Q Consensus 108 -~~-~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 185 (604)
.+ ++.||||+|+..|.|++||+||+.+++.+.. .+..+.+++++++++.+||.+..+ ++++.+||||||||
T Consensus 78 ~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~---~~~~~~~~~~~~l~~~lgl~~~~~----~~~p~eLSGGqqQR 150 (226)
T COG1136 78 AKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVLGLEDRLL----KKKPSELSGGQQQR 150 (226)
T ss_pred HHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcC---CChhHHHHHHHHHHHhcCChhhhc----cCCchhcCHHHHHH
Confidence 23 4579999999999999999999999876542 233356678899999999987655 24577999999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCe
Q 046786 186 ISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGS 256 (604)
Q Consensus 186 vsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~ 256 (604)
|+|||||+++|+++++||||.+||+.++.+|++++++++++ |+|||++|||| .+...+||++.+ .+|+
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l-~dG~ 219 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIEL-KDGK 219 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEE-eCCe
Confidence 99999999999999999999999999999999999999875 99999999997 578899999999 8998
No 15
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4.5e-49 Score=381.73 Aligned_cols=219 Identities=32% Similarity=0.512 Sum_probs=196.0
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
.++..++.. +.+.+.|++|||++|++||+++||||||||||||||+|.|+++ |++|+|.++|+++..
T Consensus 8 ~I~vr~v~~----~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~-----P~~GeI~i~G~~i~~ls~~ 78 (263)
T COG1127 8 LIEVRGVTK----SFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR-----PDKGEILIDGEDIPQLSEE 78 (263)
T ss_pred eEEEeeeee----ecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC-----CCCCeEEEcCcchhccCHH
Confidence 345555433 4577889999999999999999999999999999999999986 689999999999842
Q ss_pred ---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCCCcCHHHH
Q 046786 108 ---EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARC-RNSIIGGRLVRGLSGGER 183 (604)
Q Consensus 108 ---~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGer 183 (604)
+.++++|+++|+..||..|||+||+.|..+-. ...+++..++.+..-|+.+||... ++ .++++|||||+
T Consensus 79 ~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~--~~lp~~~i~~lv~~KL~~VGL~~~~~~-----~~PsELSGGM~ 151 (263)
T COG1127 79 ELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREH--TKLPESLIRELVLMKLELVGLRGAAAD-----LYPSELSGGMR 151 (263)
T ss_pred HHHHHHhheeEEeeccccccccchhHhhheehHhh--ccCCHHHHHHHHHHHHHhcCCChhhhh-----hCchhhcchHH
Confidence 46788999999999999999999999986543 346788888899999999999875 44 78999999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecC
Q 046786 184 KRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGK 262 (604)
Q Consensus 184 qRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~ 262 (604)
||+++||||+.||+++|+||||+||||.++..+.++|+++.+. |.|++++|||.. +++..+|++++| .+|++++.|+
T Consensus 152 KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L-~~gkv~~~Gt 229 (263)
T COG1127 152 KRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVL-ADGKVIAEGT 229 (263)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEE-eCCEEEEeCC
Confidence 9999999999999999999999999999999999999999875 999999999975 789999999999 8999999999
Q ss_pred hhhHHH
Q 046786 263 GEDVIN 268 (604)
Q Consensus 263 ~~~~~~ 268 (604)
++++.+
T Consensus 230 ~~el~~ 235 (263)
T COG1127 230 PEELLA 235 (263)
T ss_pred HHHHHh
Confidence 998753
No 16
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.2e-48 Score=390.54 Aligned_cols=219 Identities=32% Similarity=0.457 Sum_probs=190.8
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~ 108 (604)
++..|+++.+ +++.+|+|+||++++||+++|+||||||||||||+|+|+++ |.+|+|.++|+++.. +
T Consensus 3 L~~~~ls~~y----~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~-----p~~G~V~l~g~~i~~~~~ke 73 (258)
T COG1120 3 LEVENLSFGY----GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK-----PKSGEVLLDGKDIASLSPKE 73 (258)
T ss_pred eEEEEEEEEE----CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC-----CCCCEEEECCCchhhcCHHH
Confidence 4556666654 46789999999999999999999999999999999999986 569999999999853 5
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPN-SLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRIS 187 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvs 187 (604)
+.+.+|||||.......+||+|.+.++..-.... ....+++++.+++.|+.+|+.+.++ +.+.+|||||||||.
T Consensus 74 lAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~-----r~~~~LSGGerQrv~ 148 (258)
T COG1120 74 LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLAD-----RPVDELSGGERQRVL 148 (258)
T ss_pred HhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhc-----CcccccChhHHHHHH
Confidence 6789999999998888899999999874322111 1123445568999999999999988 456699999999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhH
Q 046786 188 IGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266 (604)
Q Consensus 188 ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~ 266 (604)
|||||+.+|++|+||||||.||...+.++++.++++++ +|+|||+++||++ ....++|++++| ++|++++.|+|+++
T Consensus 149 iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN-~A~ryad~~i~l-k~G~i~a~G~p~ev 226 (258)
T COG1120 149 IARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN-LAARYADHLILL-KDGKIVAQGTPEEV 226 (258)
T ss_pred HHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEE-ECCeEEeecCcchh
Confidence 99999999999999999999999999999999999995 5999999999997 578899999999 99999999999877
Q ss_pred H
Q 046786 267 I 267 (604)
Q Consensus 267 ~ 267 (604)
+
T Consensus 227 l 227 (258)
T COG1120 227 L 227 (258)
T ss_pred c
Confidence 5
No 17
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.8e-48 Score=374.39 Aligned_cols=223 Identities=28% Similarity=0.474 Sum_probs=192.6
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++.+|+...+ .+++++|+|||++|++||++||+||||||||||||+|+|+.. |++|+|.+||.++..
T Consensus 3 ~i~~~nl~k~y---p~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d-----~t~G~i~~~g~~i~~~~~k 74 (258)
T COG3638 3 MIEVKNLSKTY---PGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD-----PTSGEILFNGVQITKLKGK 74 (258)
T ss_pred eEEEeeeeeec---CCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC-----CCcceEEecccchhccchH
Confidence 45666765443 266889999999999999999999999999999999999875 679999999988742
Q ss_pred ---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcC
Q 046786 108 ---EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPN-----SLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLS 179 (604)
Q Consensus 108 ---~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 179 (604)
++|+++||++|++.|.+.+||.+|+..+..-+.+. ++..++.+..+-+.|+.+|+.+.+.++ ..+||
T Consensus 75 ~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qr-----a~~LS 149 (258)
T COG3638 75 ELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQR-----ASTLS 149 (258)
T ss_pred HHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHH-----hccCC
Confidence 46789999999999999999999999876433321 223345556788999999999988755 45999
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecCCeEE
Q 046786 180 GGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSDGSSL 258 (604)
Q Consensus 180 gGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v 258 (604)
|||+|||+|||+|+.+|++++.|||+++|||.++..+|+.|+++++ +|.|||++.||.. -..++|||++-| ++|+++
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vd-lA~~Y~~Riigl-~~G~iv 227 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVD-LAKKYADRIIGL-KAGRIV 227 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHHhhheEe-cCCcEE
Confidence 9999999999999999999999999999999999999999999986 5999999999975 577899999999 999999
Q ss_pred EecChhhHHHH
Q 046786 259 YFGKGEDVINY 269 (604)
Q Consensus 259 ~~G~~~~~~~~ 269 (604)
|+||++++.+.
T Consensus 228 fDg~~~el~~~ 238 (258)
T COG3638 228 FDGPASELTDE 238 (258)
T ss_pred EeCChhhhhHH
Confidence 99999887543
No 18
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-47 Score=397.60 Aligned_cols=203 Identities=33% Similarity=0.560 Sum_probs=189.9
Q ss_pred eeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--hccccEEEEecCCCCCCCCCH
Q 046786 51 ILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--EVKRRTGFVAQNNVFYPHLTV 128 (604)
Q Consensus 51 iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--~~~~~i~yv~Q~~~l~~~lTv 128 (604)
+|+|+|+++++||+++|+||||||||||||+|||+.+ |++|+|.++|++++. -.+|.||+|||+..|||+|||
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~-----~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV 92 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE-----PTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTV 92 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcH
Confidence 9999999999999999999999999999999999985 689999999999975 357899999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 046786 129 AETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGL 208 (604)
Q Consensus 129 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgL 208 (604)
+||+.|+.+.+ ..++++.+++|+++.+.|+|++..| +++++|||||||||+|||||+.+|+++++|||.|+|
T Consensus 93 ~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~-----r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnL 164 (338)
T COG3839 93 YENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLN-----RKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNL 164 (338)
T ss_pred HHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHh-----cCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHh
Confidence 99999998775 4577888899999999999999888 668899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHHH
Q 046786 209 DSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVIN 268 (604)
Q Consensus 209 D~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~~ 268 (604)
|+..+..+...|+++.++ |.|+|.+|||.. +...++|++++| ++|++...|+|.++.+
T Consensus 165 Da~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm-~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 165 DAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVM-NDGRIQQVGTPLELYE 223 (338)
T ss_pred hHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEE-eCCeeeecCChHHHhh
Confidence 999999999999999875 899999999965 788999999999 8999999999998854
No 19
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.7e-48 Score=377.41 Aligned_cols=192 Identities=32% Similarity=0.542 Sum_probs=175.3
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCC
Q 046786 47 EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHL 126 (604)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~l 126 (604)
+...+|+|+|+++++||+++|+||||||||||||+|+|+.+ |++|+|.++|+++ ..-...+|||+|++.|+|.+
T Consensus 14 ~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~-----p~~G~V~~~g~~v-~~p~~~~~~vFQ~~~LlPW~ 87 (248)
T COG1116 14 GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK-----PTSGEVLLDGRPV-TGPGPDIGYVFQEDALLPWL 87 (248)
T ss_pred CceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCccc-CCCCCCEEEEeccCcccchh
Confidence 44789999999999999999999999999999999999986 6799999999998 34456799999999999999
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 046786 127 TVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTS 206 (604)
Q Consensus 127 Tv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPts 206 (604)
||+||+.++...+. .+++++++++++.|+.+||.+..| +++++|||||||||+|||||+.+|++|+||||++
T Consensus 88 Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~-----~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFg 159 (248)
T COG1116 88 TVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFED-----KYPHQLSGGMRQRVAIARALATRPKLLLLDEPFG 159 (248)
T ss_pred hHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhh-----cCccccChHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 99999999987652 456777779999999999999887 6788999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecC
Q 046786 207 GLDSTMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSD 254 (604)
Q Consensus 207 gLD~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~ 254 (604)
+||+.++..+.+.|.++.+ .++||+++|||.. +...+.|||++| ++
T Consensus 160 ALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl-~~ 206 (248)
T COG1116 160 ALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVL-SN 206 (248)
T ss_pred hhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEe-cC
Confidence 9999999999999999876 5899999999986 567899999999 55
No 20
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-47 Score=380.63 Aligned_cols=219 Identities=30% Similarity=0.517 Sum_probs=185.8
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChh-cc
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAE-VK 110 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~-~~ 110 (604)
+++..|+++.+.. + ++|+|||+++++|++++|+||||||||||+|+|.|+++ |.+|+|.++|++.... -+
T Consensus 4 ~i~v~nl~v~y~~---~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~-----p~~G~i~~~g~~~~~~~~~ 74 (254)
T COG1121 4 MIEVENLTVSYGN---R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK-----PSSGEIKIFGKPVRKRRKR 74 (254)
T ss_pred EEEEeeeEEEECC---E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc-----CCcceEEEccccccccccC
Confidence 3566677666532 2 59999999999999999999999999999999999886 6799999999987653 24
Q ss_pred ccEEEEecCC---CCCCCCCHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHH
Q 046786 111 RRTGFVAQNN---VFYPHLTVAETLVFTALLRLPN-SLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRI 186 (604)
Q Consensus 111 ~~i~yv~Q~~---~l~~~lTv~e~l~f~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 186 (604)
.+||||||.. .-|| +||+|.+..+...+.+. ....+++++.+++.|+.+|+.+.+|..+| +|||||+|||
T Consensus 75 ~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSGGQ~QRV 148 (254)
T COG1121 75 LRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIG-----ELSGGQKQRV 148 (254)
T ss_pred CeEEEcCcccccCCCCC-cCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCccc-----ccCcHHHHHH
Confidence 6899999954 3355 69999999874333211 11223346789999999999999986655 9999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhH
Q 046786 187 SIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266 (604)
Q Consensus 187 sia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~ 266 (604)
-|||||+++|++|+|||||+|+|+.++..+.++|++++++|+||++++||+. .+...||+++.| ++++++.|+++++
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~L--n~~~~~~G~~~~~ 225 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICL--NRHLIASGPPEEV 225 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEE--cCeeEeccChhhc
Confidence 9999999999999999999999999999999999999989999999999986 688999999999 5899999999887
Q ss_pred HH
Q 046786 267 IN 268 (604)
Q Consensus 267 ~~ 268 (604)
.+
T Consensus 226 ~~ 227 (254)
T COG1121 226 LT 227 (254)
T ss_pred cC
Confidence 53
No 21
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=7.4e-48 Score=400.79 Aligned_cols=224 Identities=30% Similarity=0.520 Sum_probs=199.1
Q ss_pred ccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--hccccEEEEecCCC
Q 046786 44 NSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--EVKRRTGFVAQNNV 121 (604)
Q Consensus 44 ~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--~~~~~i~yv~Q~~~ 121 (604)
+.+++..+|+|+|++|++||+++++||||||||||||+|||+.. |++|+|.++|++++. -.+|.||+|||+-.
T Consensus 13 k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~-----p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YA 87 (352)
T COG3842 13 KSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ-----PSSGEILLDGEDITDVPPEKRPIGMVFQSYA 87 (352)
T ss_pred eecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCCCChhhcccceeecCcc
Confidence 34457889999999999999999999999999999999999985 689999999999975 46889999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEE
Q 046786 122 FYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFL 201 (604)
Q Consensus 122 l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illL 201 (604)
|||+|||+||+.|+.+.+ ....+++.+++++++++.++|++.++ +++.+|||||||||++||||+.+|++|+|
T Consensus 88 LFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~-----R~p~qLSGGQqQRVALARAL~~~P~vLLL 160 (352)
T COG3842 88 LFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFAD-----RKPHQLSGGQQQRVALARALVPEPKVLLL 160 (352)
T ss_pred cCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhh-----hChhhhChHHHHHHHHHHHhhcCcchhhh
Confidence 999999999999998743 33456778889999999999999776 67889999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHHHHHHhCCCCCCCC
Q 046786 202 DEPTSGLDSTMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVINYFAGIGYVPSVA 280 (604)
Q Consensus 202 DEPtsgLD~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~~~f~~~g~~~p~~ 280 (604)
|||.|+||..-+.++...|+++.+ .|.|.|++|||.. +...+.|++.+| ++|++.-.|+|+++-. .|..
T Consensus 161 DEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm-~~G~I~Q~gtP~eiY~--------~P~~ 230 (352)
T COG3842 161 DEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVM-NDGRIEQVGTPEEIYE--------RPAT 230 (352)
T ss_pred cCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEc-cCCceeecCCHHHHhh--------Ccch
Confidence 999999999999999999999986 4999999999964 788999999999 9999999999998843 3444
Q ss_pred CChHHHHHH
Q 046786 281 MNPADFLLD 289 (604)
Q Consensus 281 ~npadf~~~ 289 (604)
.=.|||+-+
T Consensus 231 ~fVA~FiG~ 239 (352)
T COG3842 231 RFVADFIGE 239 (352)
T ss_pred HHHHHHhCc
Confidence 445666554
No 22
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-47 Score=361.16 Aligned_cols=206 Identities=28% Similarity=0.439 Sum_probs=191.4
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh---hccccEEEEecCCCCCCC
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---EVKRRTGFVAQNNVFYPH 125 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---~~~~~i~yv~Q~~~l~~~ 125 (604)
.++++||||+++.||+++|+|||||||||+||+|++++. |++|.|+++|.+..+ ..|++||.++.+..++..
T Consensus 15 v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~-----P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~R 89 (245)
T COG4555 15 VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI-----PDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYAR 89 (245)
T ss_pred HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc-----CCCceEEEeecccccChHHHhhhcceecCCcChhhh
Confidence 459999999999999999999999999999999999986 689999999998742 578999999988889999
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 046786 126 LTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPT 205 (604)
Q Consensus 126 lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPt 205 (604)
||++|||.|.+++. ++..++.+++++++.+.|+|.++.|+++| ++|.||||||+|||||+++|++++|||||
T Consensus 90 lT~rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~ 161 (245)
T COG4555 90 LTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPT 161 (245)
T ss_pred hhHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCC
Confidence 99999999999885 56777888899999999999999997776 99999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHHHH
Q 046786 206 SGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVINY 269 (604)
Q Consensus 206 sgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~~~ 269 (604)
||||..+...+.+.++++.++|++||+++|... ++..+||+++++ ++|++++.|+++.+...
T Consensus 162 sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivl-h~Gevv~~gs~~~l~~r 223 (245)
T COG4555 162 SGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVL-HKGEVVLEGSIEALDAR 223 (245)
T ss_pred CCccHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEE-ecCcEEEcCCHHHHHHH
Confidence 999999999999999999999999999999975 788999999999 99999999999877544
No 23
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.2e-47 Score=377.32 Aligned_cols=210 Identities=30% Similarity=0.518 Sum_probs=190.2
Q ss_pred ccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCE---eCCh--hccccEEEEecCC
Q 046786 46 DEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGK---QFSA--EVKRRTGFVAQNN 120 (604)
Q Consensus 46 ~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~---~~~~--~~~~~i~yv~Q~~ 120 (604)
.+...+++|||+.|+.||++|++|||||||||||++|+|+.. |++|.|.+||+ +.+. ...|+||||+|+.
T Consensus 12 ~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~-----p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~Y 86 (345)
T COG1118 12 FGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET-----PDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHY 86 (345)
T ss_pred cccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC-----CCCceEEECCEeccchhccchhhcceeEEEech
Confidence 345678999999999999999999999999999999999985 68999999999 5443 2357899999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEE
Q 046786 121 VFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLF 200 (604)
Q Consensus 121 ~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~ill 200 (604)
.+|++|||.||+.|+.+.+ ....++.+.+.+++++|+.+.|++..+ +++..|||||||||++||||+.+|++|+
T Consensus 87 ALF~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~-----ryP~QLSGGQrQRVALARALA~eP~vLL 160 (345)
T COG1118 87 ALFPHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLAD-----RYPAQLSGGQRQRVALARALAVEPKVLL 160 (345)
T ss_pred hhcccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhh-----cCchhcChHHHHHHHHHHHhhcCCCeEe
Confidence 9999999999999998776 223456677889999999999998776 7789999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHHH
Q 046786 201 LDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVIN 268 (604)
Q Consensus 201 LDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~~ 268 (604)
||||+++||..-+.++.+.|+++.++ |.|++++|||+. ++++++|++++| ++|+|...|+++++.+
T Consensus 161 LDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl-~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 161 LDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVL-NQGRIEQVGPPDEVYD 227 (345)
T ss_pred ecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEe-cCCeeeeeCCHHHHhc
Confidence 99999999999999999999999876 999999999975 789999999999 9999999999999854
No 24
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=8.3e-46 Score=390.58 Aligned_cols=220 Identities=24% Similarity=0.406 Sum_probs=191.2
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-----
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----- 107 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----- 107 (604)
++..|++..+......+.+|+|||+++++||+++|+||||||||||+|+|+|+.+ |++|+|.++|+++..
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~-----p~~G~I~i~G~~i~~~~~~~ 76 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-----PTSGSVIVDGQDLTTLSNSE 76 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECCcCCHHH
Confidence 4555666655322223579999999999999999999999999999999999985 679999999998742
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHH
Q 046786 108 --EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKR 185 (604)
Q Consensus 108 --~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 185 (604)
..++.|||+||+..+++.+||+||+.+..... ..++++..+++.++++.+||.+..| +++++||||||||
T Consensus 77 l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~-----~~~~~LSgGqkQR 148 (343)
T TIGR02314 77 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHD-----SYPSNLSGGQKQR 148 (343)
T ss_pred HHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhh-----CChhhCCHHHHHH
Confidence 24678999999999999999999999876542 2355666678999999999998777 5567999999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChh
Q 046786 186 ISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGE 264 (604)
Q Consensus 186 vsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~ 264 (604)
|+|||||+++|++|+||||||+||+.++..+++.|++++++ |.|||++||++. .+.++||++++| ++|+++..|+++
T Consensus 149 V~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl-~~G~iv~~g~~~ 226 (343)
T TIGR02314 149 VAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVI-SNGELIEQGTVS 226 (343)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE-ECCEEEEEcCHH
Confidence 99999999999999999999999999999999999999875 999999999975 678899999999 899999999988
Q ss_pred hHH
Q 046786 265 DVI 267 (604)
Q Consensus 265 ~~~ 267 (604)
++.
T Consensus 227 ~v~ 229 (343)
T TIGR02314 227 EIF 229 (343)
T ss_pred HHH
Confidence 763
No 25
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.4e-46 Score=349.99 Aligned_cols=202 Identities=30% Similarity=0.442 Sum_probs=183.4
Q ss_pred ccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-------hccccEEEEec
Q 046786 46 DEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-------EVKRRTGFVAQ 118 (604)
Q Consensus 46 ~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-------~~~~~i~yv~Q 118 (604)
...+.+|+||||++++||++-|.||||||||||||+|.+..+ |++|+|.+||+++.. .+||+||+|+|
T Consensus 12 ~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~-----pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQ 86 (223)
T COG2884 12 PGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER-----PTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQ 86 (223)
T ss_pred CCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc-----CCCceEEECCeecccccccccchhhheeeeEee
Confidence 345779999999999999999999999999999999999875 689999999999853 46899999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCe
Q 046786 119 NNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSL 198 (604)
Q Consensus 119 ~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~i 198 (604)
|..|.++.||+||+.|+.+.. +.++++.++++.++|+.+||.+.++ ..+.+|||||||||+||||++.+|++
T Consensus 87 D~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~-----~lP~~LSGGEQQRvaIARAiV~~P~v 158 (223)
T COG2884 87 DFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKAR-----ALPSQLSGGEQQRVAIARAIVNQPAV 158 (223)
T ss_pred eccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhh-----cCccccCchHHHHHHHHHHHccCCCe
Confidence 999999999999999998764 4567788899999999999999887 56789999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecC
Q 046786 199 LFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGK 262 (604)
Q Consensus 199 llLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~ 262 (604)
|+.||||.+|||..+.+|++++.++.+.|.||+++|||. .-+..+-.+++.| .+|+++.+..
T Consensus 159 LlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~-~lv~~~~~rvl~l-~~Grl~~d~~ 220 (223)
T COG2884 159 LLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDL-ELVNRMRHRVLAL-EDGRLVRDES 220 (223)
T ss_pred EeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccH-HHHHhccCcEEEE-eCCEEEeccc
Confidence 999999999999999999999999999999999999995 3566666788888 8999987654
No 26
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=1.8e-45 Score=384.04 Aligned_cols=218 Identities=28% Similarity=0.425 Sum_probs=191.5
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh---h
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---E 108 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---~ 108 (604)
+++..|++..+ +++.+|+|||+++++||+++|+||||||||||+|+|+|+++ |++|+|.++|.++.. .
T Consensus 7 ~i~i~~l~k~~----~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~-----p~~G~v~i~G~~~~~~~~~ 77 (306)
T PRK13537 7 PIDFRNVEKRY----GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH-----PDAGSISLCGEPVPSRARH 77 (306)
T ss_pred eEEEEeEEEEE----CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEecccchHH
Confidence 45566665544 34679999999999999999999999999999999999985 679999999998753 4
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISI 188 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsi 188 (604)
.++.+||+||++.+++.+||+||+.|.+..+ ..+..+..++++++++.++|.+..++. +++||||||||++|
T Consensus 78 ~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~l 149 (306)
T PRK13537 78 ARQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAK-----VGELSGGMKRRLTL 149 (306)
T ss_pred HHhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCc-----hhhCCHHHHHHHHH
Confidence 5678999999999999999999999876553 234445556788999999999877755 45999999999999
Q ss_pred HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHHH
Q 046786 189 GQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVIN 268 (604)
Q Consensus 189 a~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~~ 268 (604)
|+||+++|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++..+||++++| ++|++++.|+++++..
T Consensus 150 a~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il-~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 150 ARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVI-EEGRKIAEGAPHALIE 227 (306)
T ss_pred HHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEE-ECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999999888999999999986 688899999999 8999999999988764
No 27
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-45 Score=389.78 Aligned_cols=217 Identities=27% Similarity=0.504 Sum_probs=190.6
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--hcc
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--EVK 110 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--~~~ 110 (604)
++..|+...+. +++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ |++|+|.++|+++.. ..+
T Consensus 4 l~i~~l~~~~~---~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~-----p~~G~I~~~g~~i~~~~~~~ 75 (356)
T PRK11650 4 LKLQAVRKSYD---GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER-----ITSGEIWIGGRVVNELEPAD 75 (356)
T ss_pred EEEEeEEEEeC---CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC-----CCceEEEECCEECCCCCHHH
Confidence 44555554431 34679999999999999999999999999999999999985 679999999998853 345
Q ss_pred ccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHH
Q 046786 111 RRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQ 190 (604)
Q Consensus 111 ~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~ 190 (604)
+.+|||+|+..++|++||+||+.|+.+.+ ..++.+..++++++++.+||.+..| +++++|||||||||+|||
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~-----~~~~~LSgGq~QRvalAR 147 (356)
T PRK11650 76 RDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLD-----RKPRELSGGQRQRVAMGR 147 (356)
T ss_pred CCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhh-----CChhhCCHHHHHHHHHHH
Confidence 78999999999999999999999986543 2455566678999999999988776 556799999999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 191 ELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 191 ~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
||+.+|++|+||||||+||+.++..+.+.|+++.++ |.|+|++|||+. ++..++|++++| ++|+++..|+++++.
T Consensus 148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl-~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVM-NGGVAEQIGTPVEVY 223 (356)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE-eCCEEEEECCHHHHH
Confidence 999999999999999999999999999999999875 999999999975 688999999999 899999999998874
No 28
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=4.5e-45 Score=387.28 Aligned_cols=217 Identities=30% Similarity=0.513 Sum_probs=191.8
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--hcc
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--EVK 110 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--~~~ 110 (604)
++..|+...+ +.+.+|+|+|+++++||+++|+|||||||||||++|+|+.+ |++|+|.++|+++.. ..+
T Consensus 5 l~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~~~~~~~~~ 75 (353)
T TIGR03265 5 LSIDNIRKRF----GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER-----QTAGTIYQGGRDITRLPPQK 75 (353)
T ss_pred EEEEEEEEEe----CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC-----CCceEEEECCEECCCCCHHH
Confidence 4555655443 34669999999999999999999999999999999999985 679999999998853 346
Q ss_pred ccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHH
Q 046786 111 RRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQ 190 (604)
Q Consensus 111 ~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~ 190 (604)
+.+|||+|+..+||++||+||+.|+...+ ..++.+..++++++++.+||.+..| +.+++|||||||||+|||
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~-----~~~~~LSgGq~QRvaLAR 147 (353)
T TIGR03265 76 RDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSER-----KYPGQLSGGQQQRVALAR 147 (353)
T ss_pred CCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhh-----CChhhCCHHHHHHHHHHH
Confidence 78999999999999999999999987543 2455666778999999999998777 557799999999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHHH
Q 046786 191 ELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVIN 268 (604)
Q Consensus 191 ~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~~ 268 (604)
+|+.+|++++|||||++||+.++..+.+.|+++.++ |.|+|++||++. ++..++|++++| ++|+++..|+++++.+
T Consensus 148 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl-~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 148 ALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVM-NHGVIEQVGTPQEIYR 224 (353)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEE-ECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999999875 999999999975 788999999999 8999999999988753
No 29
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-45 Score=385.27 Aligned_cols=217 Identities=23% Similarity=0.495 Sum_probs=191.9
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--hc
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--EV 109 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--~~ 109 (604)
+++..|++..+ +++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ |++|+|.++|+++.. ..
T Consensus 6 ~l~~~~l~~~~----~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-----p~~G~I~~~g~~i~~~~~~ 76 (351)
T PRK11432 6 FVVLKNITKRF----GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK-----PTEGQIFIDGEDVTHRSIQ 76 (351)
T ss_pred EEEEEeEEEEE----CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC-----CCceEEEECCEECCCCCHH
Confidence 35555655544 34569999999999999999999999999999999999985 679999999998853 34
Q ss_pred cccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHH
Q 046786 110 KRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIG 189 (604)
Q Consensus 110 ~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia 189 (604)
++.+|||+|+..+||++||+||+.|+.+.+ ..++++..++++++++.+||.+..| ++++.|||||||||+||
T Consensus 77 ~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~-----r~~~~LSgGq~QRVaLA 148 (351)
T PRK11432 77 QRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFED-----RYVDQISGGQQQRVALA 148 (351)
T ss_pred HCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhc-----CChhhCCHHHHHHHHHH
Confidence 578999999999999999999999987643 2455666778999999999988766 56779999999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 190 QELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 190 ~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
|+|+.+|++|+|||||+|||+.++.++.+.|+++.++ |+|+|++|||+. ++..++|++++| ++|+++..|+++++.
T Consensus 149 RaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm-~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 149 RALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVM-NKGKIMQIGSPQELY 225 (351)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEE-ECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999999865 999999999975 688999999999 899999999998874
No 30
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=9.4e-45 Score=382.95 Aligned_cols=219 Identities=28% Similarity=0.411 Sum_probs=191.5
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh---h
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---E 108 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---~ 108 (604)
+++..|+...+ +++.+|+||||++++||++||+||||||||||+|+|+|+++ |++|+|.++|+++.. .
T Consensus 41 ~i~i~nl~k~y----~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~-----p~~G~i~i~G~~~~~~~~~ 111 (340)
T PRK13536 41 AIDLAGVSKSY----GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS-----PDAGKITVLGVPVPARARL 111 (340)
T ss_pred eEEEEEEEEEE----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCceEEEECCEECCcchHH
Confidence 46666665544 34679999999999999999999999999999999999985 679999999998753 4
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISI 188 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsi 188 (604)
.++.+||+||++.+++.+||+||+.+....+ ..+..+..++++++++.+||.+..++. +++||||||||++|
T Consensus 112 ~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~-----~~~LS~G~kqrv~l 183 (340)
T PRK13536 112 ARARIGVVPQFDNLDLEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADAR-----VSDLSGGMKRRLTL 183 (340)
T ss_pred HhccEEEEeCCccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhCCC-----hhhCCHHHHHHHHH
Confidence 5678999999999999999999999866543 223444456788899999999877755 45999999999999
Q ss_pred HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHHH
Q 046786 189 GQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVIN 268 (604)
Q Consensus 189 a~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~~ 268 (604)
|++|+++|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++| ++|++++.|+++++.+
T Consensus 184 A~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il-~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 184 ARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVL-EAGRKIAEGRPHALID 261 (340)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEE-ECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999999888999999999975 788999999999 8999999999998865
Q ss_pred H
Q 046786 269 Y 269 (604)
Q Consensus 269 ~ 269 (604)
.
T Consensus 262 ~ 262 (340)
T PRK13536 262 E 262 (340)
T ss_pred h
Confidence 3
No 31
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-45 Score=351.15 Aligned_cols=235 Identities=24% Similarity=0.403 Sum_probs=194.4
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-----
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----- 107 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----- 107 (604)
++..|+.+.+ +++.+|+|||+.|++++++|+|||||||||||||+|......-.....+|+|.++|+++..
T Consensus 8 ~~~~~l~~yY----g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 8 IEVRDLNLYY----GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred eEecceeEEE----CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 3444544433 5678999999999999999999999999999999999875422222358999999999832
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHH
Q 046786 108 -EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRI 186 (604)
Q Consensus 108 -~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 186 (604)
++|+++|+|+|.+.-|| +|++||+.|+.++.. ..+++-.++|+..|+..+|++.-..+. ++...+|||||+||+
T Consensus 84 ~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g---~~~~~ldeiVe~sLk~AaLWdEVKDrL-~~sa~~LSGGQQQRL 158 (253)
T COG1117 84 VELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHG---IKDKELDEIVESSLKKAALWDEVKDRL-HKSALGLSGGQQQRL 158 (253)
T ss_pred HHHHHHheeeccCCCCCC-chHHHHHHHhHHhhc---cchHHHHHHHHHHHHHhHhHHHhHHHh-hCCccCCChhHHHHH
Confidence 57999999999999999 899999999987753 223666778999999999976432222 256778999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhH
Q 046786 187 SIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266 (604)
Q Consensus 187 sia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~ 266 (604)
+|||+|+.+|+||++|||||+|||.++..|-+++.+|++ .-|||++||.+. +..+..|+..++ ..|+++.+|+++++
T Consensus 159 cIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~-~yTIviVTHnmq-QAaRvSD~taFf-~~G~LvE~g~T~~i 235 (253)
T COG1117 159 CIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-KYTIVIVTHNMQ-QAARVSDYTAFF-YLGELVEFGPTDKI 235 (253)
T ss_pred HHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh-ccEEEEEeCCHH-HHHHHhHhhhhh-cccEEEEEcCHHhh
Confidence 999999999999999999999999999999999999985 689999999986 678999999999 89999999999877
Q ss_pred HHHHHhCCCCCCCCCChHHHH
Q 046786 267 INYFAGIGYVPSVAMNPADFL 287 (604)
Q Consensus 267 ~~~f~~~g~~~p~~~npadf~ 287 (604)
. ..|...-..||+
T Consensus 236 F--------~~P~~~~TedYi 248 (253)
T COG1117 236 F--------TNPKHKRTEDYI 248 (253)
T ss_pred h--------cCccHHHHHHHh
Confidence 3 345444445554
No 32
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=6.3e-45 Score=379.58 Aligned_cols=208 Identities=31% Similarity=0.449 Sum_probs=184.9
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh---hccccEEEEecCCCCC
Q 046786 47 EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---EVKRRTGFVAQNNVFY 123 (604)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---~~~~~i~yv~Q~~~l~ 123 (604)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.. ..++.+||++|++.++
T Consensus 4 ~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR-----PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred CCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEcccCHHHHHhhcEEecCCCCCC
Confidence 34679999999999999999999999999999999999985 679999999998743 3567899999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeC
Q 046786 124 PHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDE 203 (604)
Q Consensus 124 ~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDE 203 (604)
+.+||+||+.+.+..+ ..+..+..++++++++.+||.+..++ .++.|||||||||+||+||+.+|++|+|||
T Consensus 79 ~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~la~al~~~p~lllLDE 150 (302)
T TIGR01188 79 EDLTGRENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADR-----PVGTYSGGMRRRLDIAASLIHQPDVLFLDE 150 (302)
T ss_pred CCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCC-----chhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9999999999876553 23344455678999999999887774 456999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHHHH
Q 046786 204 PTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVINY 269 (604)
Q Consensus 204 PtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~~~ 269 (604)
||+|||+.++..+.+.|++++++|+|||++||++. ++..++|++++| ++|++++.|+++++.+-
T Consensus 151 Pt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l-~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 151 PTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAII-DHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEE-ECCEEEEECCHHHHHHh
Confidence 99999999999999999999888999999999975 688899999999 89999999999887553
No 33
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-44 Score=363.34 Aligned_cols=205 Identities=33% Similarity=0.524 Sum_probs=179.6
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-------hccccEEEEecCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-------EVKRRTGFVAQNN 120 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-------~~~~~i~yv~Q~~ 120 (604)
++.+|+|+|+++++||+++|+||||||||||||+|+|+++ |++|+|.++|+++.. .+++.++||+|++
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~ 86 (235)
T cd03261 12 GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR-----PDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSG 86 (235)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEccccChhhHHHHhcceEEEccCc
Confidence 3569999999999999999999999999999999999985 579999999998642 3467899999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEE
Q 046786 121 VFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLF 200 (604)
Q Consensus 121 ~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~ill 200 (604)
.+++.+||+||+.+...... ..+.++..+++.++++.+||.+..+ +.+++|||||||||+||++|+.+|++|+
T Consensus 87 ~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrv~ia~al~~~p~lll 159 (235)
T cd03261 87 ALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAED-----LYPAELSGGMKKRVALARALALDPELLL 159 (235)
T ss_pred ccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhc-----CChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999998754321 2344455567889999999987666 4456999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhH
Q 046786 201 LDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266 (604)
Q Consensus 201 LDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~ 266 (604)
|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+..++|++++| ++|++++.|+++++
T Consensus 160 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l-~~G~i~~~g~~~~~ 224 (235)
T cd03261 160 YDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVL-YDGKIVAEGTPEEL 224 (235)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEE-ECCeEEEecCHHHH
Confidence 99999999999999999999999874 899999999986 577899999999 89999999988765
No 34
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.8e-45 Score=356.05 Aligned_cols=222 Identities=31% Similarity=0.437 Sum_probs=192.1
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+.+.++.......+|+|||+++++||+++|+|+||||||||.++|+|+.+ |++|+|.++|++..+
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~-----p~~G~I~~~G~~~~~~~~~ 77 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK-----PSSGSILLDGKPLAPKKRA 77 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC-----CCCceEEECCcccCccccc
Confidence 46677877777655444579999999999999999999999999999999999986 679999999988754
Q ss_pred -hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHH
Q 046786 108 -EVKRRTGFVAQNN--VFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERK 184 (604)
Q Consensus 108 -~~~~~i~yv~Q~~--~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 184 (604)
.+++.+-+||||+ .+.|..||++.|.-+... .+.++.+ +++.++++.+||....- ++++.+|||||||
T Consensus 78 ~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~~--~~i~~~L~~VgL~~~~l----~R~P~eLSGGQ~Q 148 (252)
T COG1124 78 KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKSQ--QRIAELLDQVGLPPSFL----DRRPHELSGGQRQ 148 (252)
T ss_pred hhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHHH--HHHHHHHHHcCCCHHHH----hcCchhcChhHHH
Confidence 3578899999998 489999999999877543 2333333 34999999999975322 3778899999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecCh
Q 046786 185 RISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKG 263 (604)
Q Consensus 185 Rvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~ 263 (604)
|++|||||+.+|++|+||||||+||+..+.+|+++|.+++++ |.|.|+++||.+ .+..+|||+++| ++|+++..++.
T Consensus 149 RiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm-~~G~ivE~~~~ 226 (252)
T COG1124 149 RIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVM-DNGQIVEIGPT 226 (252)
T ss_pred HHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeee-eCCeEEEeech
Confidence 999999999999999999999999999999999999999874 899999999975 789999999999 89999999999
Q ss_pred hhHHHH
Q 046786 264 EDVINY 269 (604)
Q Consensus 264 ~~~~~~ 269 (604)
+++.+.
T Consensus 227 ~~l~~~ 232 (252)
T COG1124 227 EELLSH 232 (252)
T ss_pred hhhhcC
Confidence 988654
No 35
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=1.5e-44 Score=384.01 Aligned_cols=215 Identities=28% Similarity=0.486 Sum_probs=189.3
Q ss_pred eeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccc--cEEEECCEeCCh--hc
Q 046786 34 KKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQ--GHITYNGKQFSA--EV 109 (604)
Q Consensus 34 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~--G~I~~~G~~~~~--~~ 109 (604)
+..|++..+ +++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ |++ |+|.++|+++.. ..
T Consensus 7 ~~~~l~~~~----~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-----p~~~~G~i~~~g~~~~~~~~~ 77 (362)
T TIGR03258 7 RIDHLRVAY----GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK-----AAGLTGRIAIADRDLTHAPPH 77 (362)
T ss_pred EEEEEEEEE----CCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCCEEEEECCEECCCCCHH
Confidence 344544433 34569999999999999999999999999999999999985 568 999999998753 34
Q ss_pred cccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHH
Q 046786 110 KRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIG 189 (604)
Q Consensus 110 ~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia 189 (604)
++.+|||+|+..++|++||+||+.|+...+ ..++++.+++++++++.+||.+..| +.+++|||||||||+||
T Consensus 78 ~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~-----~~~~~LSgGq~QRvaLA 149 (362)
T TIGR03258 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAA-----HLPAQLSGGMQQRIAIA 149 (362)
T ss_pred HCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhh-----CChhhCCHHHHHHHHHH
Confidence 578999999999999999999999987543 2455666678999999999998777 55679999999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 190 QELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG--GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 190 ~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~--g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
|||+.+|++|+|||||+|||+.++.++.+.|++++++ |+|+|++||++. ++..++|++++| ++|+++..|+++++.
T Consensus 150 RAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl-~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 150 RAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIM-KDGRLAAHGEPQALY 227 (362)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEE-ECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999999876 899999999975 678999999999 899999999998874
No 36
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=2.4e-44 Score=381.68 Aligned_cols=219 Identities=27% Similarity=0.469 Sum_probs=189.5
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--hcc
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--EVK 110 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--~~~ 110 (604)
++..|+...+ +++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ |++|+|.++|+++.. ..+
T Consensus 3 L~i~~l~~~~----~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-----p~~G~I~i~g~~i~~~~~~~ 73 (353)
T PRK10851 3 IEIANIKKSF----GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH-----QTSGHIRFHGTDVSRLHARD 73 (353)
T ss_pred EEEEEEEEEe----CCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCCCCHHH
Confidence 3444554443 34569999999999999999999999999999999999985 679999999998853 345
Q ss_pred ccEEEEecCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHH
Q 046786 111 RRTGFVAQNNVFYPHLTVAETLVFTALLRLP-NSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIG 189 (604)
Q Consensus 111 ~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia 189 (604)
+.+|||+|+..++|++||+||+.|+...+.. ...++++..++++++++.++|.+..| +++.+|||||||||+||
T Consensus 74 r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----~~~~~LSgGq~QRvalA 148 (353)
T PRK10851 74 RKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLAD-----RYPAQLSGGQKQRVALA 148 (353)
T ss_pred CCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhh-----CChhhCCHHHHHHHHHH
Confidence 6899999999999999999999998653211 12345566678999999999987776 55679999999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 190 QELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 190 ~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
|||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||++. ++..++|++++| ++|+++..|+++++.
T Consensus 149 rAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl-~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 149 RALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVM-SQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE-ECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999999876 899999999975 688999999999 899999999998874
No 37
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=2.3e-44 Score=383.98 Aligned_cols=217 Identities=26% Similarity=0.458 Sum_probs=191.0
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--hc
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--EV 109 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--~~ 109 (604)
+++..|+...+ +++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ |++|+|.++|+++.. ..
T Consensus 14 ~L~l~~l~~~~----~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~-----p~~G~I~~~g~~i~~~~~~ 84 (375)
T PRK09452 14 LVELRGISKSF----DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET-----PDSGRIMLDGQDITHVPAE 84 (375)
T ss_pred eEEEEEEEEEE----CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECCCCCHH
Confidence 35556665544 34569999999999999999999999999999999999985 579999999998853 34
Q ss_pred cccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHH
Q 046786 110 KRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIG 189 (604)
Q Consensus 110 ~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia 189 (604)
++.+|||+|+..+||++||+||+.|+.+.+ ..++.+.+++++++++.+||.+..| +++.+|||||||||+||
T Consensus 85 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~-----~~p~~LSgGq~QRVaLA 156 (375)
T PRK09452 85 NRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQ-----RKPHQLSGGQQQRVAIA 156 (375)
T ss_pred HCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhh-----CChhhCCHHHHHHHHHH
Confidence 578999999999999999999999986543 2345566678899999999998777 55679999999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 190 QELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 190 ~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
|+|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|+|++||++. ++..++|++++| ++|+++..|+++++.
T Consensus 157 RaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl-~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 157 RAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVM-RDGRIEQDGTPREIY 233 (375)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE-ECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999999875 999999999975 688999999999 899999999998874
No 38
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-44 Score=361.58 Aligned_cols=217 Identities=32% Similarity=0.511 Sum_probs=190.9
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCC-----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS-----A 107 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~-----~ 107 (604)
+...++.+.+.+. +.+|+|+|+++++||.++|+||||||||||+++|+|+++ |++|.|.++|.+.. .
T Consensus 4 i~~~~l~~~y~~~---~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~-----p~~G~v~~~g~~~~~~~~~~ 75 (235)
T COG1122 4 IEAENLSFRYPGR---KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK-----PTSGEVLVDGLDTSSEKSLL 75 (235)
T ss_pred EEEEEEEEEcCCC---ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc-----CCCCEEEECCeeccchhhHH
Confidence 4445555554332 689999999999999999999999999999999999986 67899999999865 2
Q ss_pred hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHH
Q 046786 108 EVKRRTGFVAQNN--VFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKR 185 (604)
Q Consensus 108 ~~~~~i~yv~Q~~--~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 185 (604)
..++++|||+|++ .++. -||.|.+.|+.... ..++++.+++++++++.+|+.+.++ +.+..||||||||
T Consensus 76 ~~~~~vG~VfQnpd~q~~~-~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~-----r~p~~LSGGqkqR 146 (235)
T COG1122 76 ELRQKVGLVFQNPDDQLFG-PTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLD-----RPPFNLSGGQKQR 146 (235)
T ss_pred HhhcceEEEEECccccccc-CcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhcc-----CCccccCCcceee
Confidence 5788999999997 3444 59999999987643 4567778899999999999998877 6788999999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChh
Q 046786 186 ISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGE 264 (604)
Q Consensus 186 vsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~ 264 (604)
|+||.+|+.+|++|+|||||+|||+..+.++++.++++.++ |+|||++|||.. .+..++|++++| ++|+++++|+|.
T Consensus 147 vaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl-~~G~i~~~g~p~ 224 (235)
T COG1122 147 VAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVL-DDGKILADGDPA 224 (235)
T ss_pred HHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEE-ECCEEeecCCHH
Confidence 99999999999999999999999999999999999999987 799999999975 688899999999 899999999987
Q ss_pred hHHH
Q 046786 265 DVIN 268 (604)
Q Consensus 265 ~~~~ 268 (604)
++.+
T Consensus 225 ~i~~ 228 (235)
T COG1122 225 EIFN 228 (235)
T ss_pred HHhh
Confidence 7654
No 39
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=2.3e-44 Score=381.77 Aligned_cols=207 Identities=25% Similarity=0.448 Sum_probs=185.6
Q ss_pred ccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----hc----cccEEEEe
Q 046786 46 DEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----EV----KRRTGFVA 117 (604)
Q Consensus 46 ~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~~----~~~i~yv~ 117 (604)
++.+.+|+|+||++++||+++|+|||||||||||++|+|+.+ |++|+|.++|+++.. .. ++.++||+
T Consensus 3 ~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~-----p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~ 77 (363)
T TIGR01186 3 TGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE-----PTAGQIFIDGENIMKQSPVELREVRRKKIGMVF 77 (363)
T ss_pred cCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-----CCceEEEECCEECCcCCHHHHHHHHhCcEEEEE
Confidence 345679999999999999999999999999999999999986 679999999999853 23 57899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCC
Q 046786 118 QNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPS 197 (604)
Q Consensus 118 Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~ 197 (604)
|+..++|++||+||+.|..... ..++++..+++.++++.+||.+..+ +++..|||||||||+|||||+.+|+
T Consensus 78 Q~~~l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~-----~~p~~LSGGq~QRV~lARAL~~~p~ 149 (363)
T TIGR01186 78 QQFALFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEH-----RYPDELSGGMQQRVGLARALAAEPD 149 (363)
T ss_pred CCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhh-----CChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999986543 3456666778999999999987766 5566999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 198 LLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 198 illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
+|||||||+|||+.++..+.+.++++.++ |+|||++||++. ++..++|++++| ++|+++..|+++++.
T Consensus 150 iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl-~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 150 ILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIM-KAGEIVQVGTPDEIL 218 (363)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE-eCCEEEeeCCHHHHH
Confidence 99999999999999999999999999764 999999999975 678899999999 899999999998874
No 40
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-44 Score=379.66 Aligned_cols=220 Identities=24% Similarity=0.413 Sum_probs=189.1
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-----
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----- 107 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----- 107 (604)
++..|+++.+.....++.+|+|+|+++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~-----p~~G~I~~~g~~i~~~~~~~ 76 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER-----PTSGRVLVDGQDLTALSEKE 76 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECCcCCHHH
Confidence 4555666655322224679999999999999999999999999999999999985 579999999998742
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHH
Q 046786 108 --EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKR 185 (604)
Q Consensus 108 --~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 185 (604)
..++.+|||+|++.+++.+||+||+.+....+ ..++++..++++++++.+||.+..+ +.+++||||||||
T Consensus 77 ~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~-----~~~~~LSgGq~qR 148 (343)
T PRK11153 77 LRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKAD-----RYPAQLSGGQKQR 148 (343)
T ss_pred HHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhh-----CChhhCCHHHHHH
Confidence 23578999999999999999999999876543 2344555667899999999987766 4466999999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChh
Q 046786 186 ISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGE 264 (604)
Q Consensus 186 vsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~ 264 (604)
++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+++|++++| ++|++++.|+++
T Consensus 149 v~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l-~~G~i~~~g~~~ 226 (343)
T PRK11153 149 VAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVI-DAGRLVEQGTVS 226 (343)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE-ECCEEEEEcCHH
Confidence 99999999999999999999999999999999999999865 999999999975 677899999999 899999999988
Q ss_pred hHH
Q 046786 265 DVI 267 (604)
Q Consensus 265 ~~~ 267 (604)
++.
T Consensus 227 ~~~ 229 (343)
T PRK11153 227 EVF 229 (343)
T ss_pred HHH
Confidence 764
No 41
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-44 Score=383.57 Aligned_cols=218 Identities=28% Similarity=0.492 Sum_probs=191.3
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--hc
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--EV 109 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--~~ 109 (604)
+++..|+...+ +++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ |++|+|.++|+++.. ..
T Consensus 19 ~l~l~~v~~~~----~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-----p~~G~I~i~g~~i~~~~~~ 89 (377)
T PRK11607 19 LLEIRNLTKSF----DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ-----PTAGQIMLDGVDLSHVPPY 89 (377)
T ss_pred eEEEEeEEEEE----CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECCCCCHH
Confidence 45555655543 34569999999999999999999999999999999999985 679999999998753 35
Q ss_pred cccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHH
Q 046786 110 KRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIG 189 (604)
Q Consensus 110 ~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia 189 (604)
++.+|||+|+..+||++||.||+.|+.+.+ ..++.+..++++++++.+||.+..+ +++++|||||||||+||
T Consensus 90 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~-----~~~~~LSgGq~QRVaLA 161 (377)
T PRK11607 90 QRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAK-----RKPHQLSGGQRQRVALA 161 (377)
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhc-----CChhhCCHHHHHHHHHH
Confidence 678999999999999999999999986543 2345666678999999999987766 56779999999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHHH
Q 046786 190 QELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVIN 268 (604)
Q Consensus 190 ~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~~ 268 (604)
|+|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|.|+|++|||+. ++..++|++++| ++|+++..|+++++.+
T Consensus 162 RAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl-~~G~i~~~g~~~~~~~ 239 (377)
T PRK11607 162 RSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIM-NRGKFVQIGEPEEIYE 239 (377)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEE-eCCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999999876 4999999999975 688999999999 8999999999988753
No 42
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=8.1e-44 Score=371.43 Aligned_cols=217 Identities=28% Similarity=0.425 Sum_probs=187.4
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh---hc
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---EV 109 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---~~ 109 (604)
++..|++..+ +++.+|+|+|+++++||+++|+||||||||||||+|+|+++ |++|+|.++|+++.. ..
T Consensus 5 i~~~~l~~~~----~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~~~~ 75 (303)
T TIGR01288 5 IDLVGVSKSY----GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS-----PDRGKITVLGEPVPSRARLA 75 (303)
T ss_pred EEEEeEEEEe----CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECcccHHHH
Confidence 4555655544 34569999999999999999999999999999999999985 579999999998742 34
Q ss_pred cccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHH
Q 046786 110 KRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIG 189 (604)
Q Consensus 110 ~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia 189 (604)
++.+||++|++.+++.+||+||+.+..... ..+.++..++++++++.++|.+..++. +++||||||||++||
T Consensus 76 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~-----~~~LSgG~~qrv~la 147 (303)
T TIGR01288 76 RVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVR-----VALLSGGMKRRLTLA 147 (303)
T ss_pred hhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCc-----hhhCCHHHHHHHHHH
Confidence 678999999999999999999998755432 133444455678899999998877744 559999999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHHH
Q 046786 190 QELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVIN 268 (604)
Q Consensus 190 ~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~~ 268 (604)
++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++..++|++++| ++|++++.|+++++.+
T Consensus 148 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l-~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 148 RALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVL-ESGRKIAEGRPHALID 224 (303)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEE-ECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999999888999999999986 678899999999 8999999999988754
No 43
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-43 Score=367.18 Aligned_cols=239 Identities=26% Similarity=0.368 Sum_probs=197.1
Q ss_pred heeeeEEEEEeccc-cccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 33 LKKVNMLVIIKNSD-EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 33 ~~~~~~~~~~~~~~-~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
++..|+.+.+.... ..+.+|+|+|+++++||+++|+||||||||||+|+|+|+++ |++|+|.++|.++..
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~~~~~ 76 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ-----PTEGKVTVGDIVVSSTSKQ 76 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCcEEEECCEECcccccc
Confidence 44556666553221 12469999999999999999999999999999999999985 679999999998731
Q ss_pred ----hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCcCH
Q 046786 108 ----EVKRRTGFVAQNN--VFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLA-RCRNSIIGGRLVRGLSG 180 (604)
Q Consensus 108 ----~~~~~i~yv~Q~~--~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSg 180 (604)
..++.+|||+|++ .+++ .||.|++.|+.... ..++++..+++.++++.+||. +..+ +.++.|||
T Consensus 77 ~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~-----~~~~~LSg 147 (288)
T PRK13643 77 KEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWE-----KSPFELSG 147 (288)
T ss_pred ccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhcc-----CCcccCCH
Confidence 3467899999986 5565 59999999876432 234556667889999999996 3444 55679999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEe
Q 046786 181 GERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYF 260 (604)
Q Consensus 181 GerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~ 260 (604)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+..++|++++| ++|++++.
T Consensus 148 GqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l-~~G~i~~~ 225 (288)
T PRK13643 148 GQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLL-EKGHIISC 225 (288)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEE-ECCEEEEE
Confidence 9999999999999999999999999999999999999999999878999999999985 677889999999 89999999
Q ss_pred cChhhHH---HHHHhCCCCCCCCCChHHHH
Q 046786 261 GKGEDVI---NYFAGIGYVPSVAMNPADFL 287 (604)
Q Consensus 261 G~~~~~~---~~f~~~g~~~p~~~npadf~ 287 (604)
|+++++. +.+...|+.+|.....++.+
T Consensus 226 g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (288)
T PRK13643 226 GTPSDVFQEVDFLKAHELGVPKATHFADQL 255 (288)
T ss_pred CCHHHHHcCHHHHHHcCCCCChHHHHHHHH
Confidence 9999874 44567788777655444444
No 44
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=5.8e-44 Score=354.57 Aligned_cols=208 Identities=25% Similarity=0.424 Sum_probs=176.7
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-----
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----- 107 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----- 107 (604)
++..|+++.+.. +.+.+|+|+|+++++||+++|+||||||||||||+|+|+++ |++|+|.++|+++..
T Consensus 2 l~~~~l~~~~~~--~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~~~~ 74 (216)
T TIGR00960 2 IRFEQVSKAYPG--GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK-----PTRGKIRFNGQDLTRLRGRE 74 (216)
T ss_pred eEEEEEEEEecC--CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEehhhcChhH
Confidence 345565554421 12469999999999999999999999999999999999985 579999999998742
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHH
Q 046786 108 --EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKR 185 (604)
Q Consensus 108 --~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 185 (604)
..++.++|++|++.+++.+||+||+.+....+ ....++..+++.++++.+||.+..+ +.+.+||||||||
T Consensus 75 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qr 146 (216)
T TIGR00960 75 IPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAH-----ALPMQLSGGEQQR 146 (216)
T ss_pred HHHHHHhceEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhh-----CChhhCCHHHHHH
Confidence 24568999999999999999999999876542 1233445567899999999987666 4456999999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeE
Q 046786 186 ISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSS 257 (604)
Q Consensus 186 vsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~ 257 (604)
++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+..++|++++| ++|++
T Consensus 147 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l-~~G~i 216 (216)
T TIGR00960 147 VAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTL-SRGRL 216 (216)
T ss_pred HHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEE-eCCcC
Confidence 99999999999999999999999999999999999999877999999999985 677889999999 88874
No 45
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2e-45 Score=346.14 Aligned_cols=212 Identities=27% Similarity=0.499 Sum_probs=190.6
Q ss_pred eccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-----hccccEEEEe
Q 046786 43 KNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-----EVKRRTGFVA 117 (604)
Q Consensus 43 ~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-----~~~~~i~yv~ 117 (604)
.++++++++++|||+++++||+++++|||||||||.+.++.|+.+ |++|+|.+||.+++. ..|..|||+|
T Consensus 11 ~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~-----~d~G~i~ld~~diT~lPm~~RArlGigYLp 85 (243)
T COG1137 11 AKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR-----PDSGKILLDDEDITKLPMHKRARLGIGYLP 85 (243)
T ss_pred hHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe-----cCCceEEECCcccccCChHHHhhcCccccc
Confidence 345677889999999999999999999999999999999999985 689999999999864 3455799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCC
Q 046786 118 QNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPS 197 (604)
Q Consensus 118 Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~ 197 (604)
|++..|..|||+||+......+.. ...+.+++++.+++|+.+++.|.+|++ ...||||||||+.|||||+.+|+
T Consensus 86 QE~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~-----a~sLSGGERRR~EIARaLa~~P~ 159 (243)
T COG1137 86 QEASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSK-----AYSLSGGERRRVEIARALAANPK 159 (243)
T ss_pred ccchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCc-----ccccccchHHHHHHHHHHhcCCC
Confidence 999999999999999987776532 223446666789999999999999854 55999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 198 LLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 198 illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
.++||||++|.||.+..+|.++++.|++.|.-|++|-|+-. +...++||..++ ++|+++++|+|+++.
T Consensus 160 fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi-~~G~vla~G~p~ei~ 227 (243)
T COG1137 160 FILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYII-SDGKVLAEGSPEEIV 227 (243)
T ss_pred EEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEE-ecCeEEecCCHHHHh
Confidence 99999999999999999999999999999999999999976 678999999999 899999999999875
No 46
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-43 Score=353.75 Aligned_cols=203 Identities=33% Similarity=0.500 Sum_probs=178.9
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh---hccccEEEEecCCCCCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---EVKRRTGFVAQNNVFYP 124 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---~~~~~i~yv~Q~~~l~~ 124 (604)
++.+|+|+|+++++||+++|+||||||||||+|+|+|+++ |++|+|.++|.++.. ..++.++|++|++.+++
T Consensus 12 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~ 86 (220)
T cd03265 12 DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK-----PTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDD 86 (220)
T ss_pred CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEecCcChHHHhhcEEEecCCccccc
Confidence 4569999999999999999999999999999999999875 579999999988642 34568999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 046786 125 HLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEP 204 (604)
Q Consensus 125 ~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEP 204 (604)
.+||+||+.+....+ ....++..++++++++.+||.+..++ .++.||||||||++||++|+.+|++++||||
T Consensus 87 ~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qr~~la~al~~~p~llllDEP 158 (220)
T cd03265 87 ELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADR-----LVKTYSGGMRRRLEIARSLVHRPEVLFLDEP 158 (220)
T ss_pred cCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999999999876543 22334445678999999999876664 4569999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhh
Q 046786 205 TSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGED 265 (604)
Q Consensus 205 tsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~ 265 (604)
|+|||+.++..+.+.|++++++ |+|||+++|++. .+...+|++++| ++|+++..|++++
T Consensus 159 t~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l-~~G~i~~~~~~~~ 218 (220)
T cd03265 159 TIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAII-DHGRIIAEGTPEE 218 (220)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE-eCCEEEEeCChHH
Confidence 9999999999999999999876 899999999976 677889999999 8999999988765
No 47
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-43 Score=352.87 Aligned_cols=199 Identities=29% Similarity=0.517 Sum_probs=175.2
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCH
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTV 128 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv 128 (604)
+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ |++|+|.++|+++.. .++.++||+|++.+++.+|+
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~-~~~~i~~v~q~~~~~~~~tv 90 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER-----PTSGEVLVDGEPVTG-PGPDRGYVFQQDALLPWLTV 90 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECcc-ccCcEEEEecccccccCCCH
Confidence 579999999999999999999999999999999999975 579999999998753 45679999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 046786 129 AETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGL 208 (604)
Q Consensus 129 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgL 208 (604)
+||+.+....+ ....++..++++++++.+||.+..+ +.++.||||||||++||++|+.+|++++|||||+||
T Consensus 91 ~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~L 162 (220)
T cd03293 91 LDNVALGLELQ---GVPKAEARERAEELLELVGLSGFEN-----AYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSAL 162 (220)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhh-----CCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCC
Confidence 99999875443 1233444567899999999987666 445699999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEec--CCeEEEecCh
Q 046786 209 DSTMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSS--DGSSLYFGKG 263 (604)
Q Consensus 209 D~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~--~G~~v~~G~~ 263 (604)
|+.++..+.+.|+++++ .|+|||+++|++. .+...+|++++| + +|+++..++.
T Consensus 163 D~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l-~~~~G~i~~~~~~ 218 (220)
T cd03293 163 DALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVL-SARPGRIVAEVEV 218 (220)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEE-ECCCCEEEEEEEe
Confidence 99999999999999975 5899999999985 577889999999 7 7999988765
No 48
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-43 Score=379.39 Aligned_cols=216 Identities=32% Similarity=0.557 Sum_probs=188.3
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--hcc
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--EVK 110 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--~~~ 110 (604)
++..|+...+ +++.+|+|+|+++++||+++|+||||||||||||+|+|+++ |++|+|.++|+++.. ..+
T Consensus 4 l~i~~l~~~~----~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~-----p~~G~I~~~g~~i~~~~~~~ 74 (369)
T PRK11000 4 VTLRNVTKAY----GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED-----ITSGDLFIGEKRMNDVPPAE 74 (369)
T ss_pred EEEEEEEEEe----CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECCCCCHhH
Confidence 4455555443 34569999999999999999999999999999999999985 679999999998753 235
Q ss_pred ccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHH
Q 046786 111 RRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQ 190 (604)
Q Consensus 111 ~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~ 190 (604)
+.+|||+|+..+++.+||+||+.|+...+ ..+.++..++++++++.+||.+..+ +.+.+|||||||||+|||
T Consensus 75 ~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~-----~~~~~LSgGq~QRvaLAr 146 (369)
T PRK11000 75 RGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLD-----RKPKALSGGQRQRVAIGR 146 (369)
T ss_pred CCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhc-----CChhhCCHHHHHHHHHHH
Confidence 67999999999999999999999986543 2344555678999999999987766 456699999999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 191 ELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 191 ~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||++. ++..++|++++| ++|+++..|+++++.
T Consensus 147 aL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl-~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVL-DAGRVAQVGKPLELY 222 (369)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEE-ECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999875 899999999975 688899999999 899999999998874
No 49
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-43 Score=356.67 Aligned_cols=219 Identities=26% Similarity=0.426 Sum_probs=184.9
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-----
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----- 107 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----- 107 (604)
++..|+++.+.++.+.+.+|+|+|+++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~~~ 76 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER-----PTSGSVLVDGTDLTLLSGKE 76 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEcccCCHHH
Confidence 3445555544321112379999999999999999999999999999999999986 579999999998742
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHH
Q 046786 108 --EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKR 185 (604)
Q Consensus 108 --~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 185 (604)
..++.++|++|++.+++.+|++||+.+....+ .....+..+.+.++++.+||.+..+ +.++.||||||||
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qr 148 (233)
T cd03258 77 LRKARRRIGMIFQHFNLLSSRTVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKAD-----AYPAQLSGGQKQR 148 (233)
T ss_pred HHHHHhheEEEccCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhh-----cChhhCCHHHHHH
Confidence 23567999999999999999999999875433 1234444567889999999987666 4466999999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChh
Q 046786 186 ISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGE 264 (604)
Q Consensus 186 vsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~ 264 (604)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+..++|++++| ++|+++..|+++
T Consensus 149 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~~G~i~~~~~~~ 226 (233)
T cd03258 149 VGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVM-EKGEVVEEGTVE 226 (233)
T ss_pred HHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-ECCEEEEecCHH
Confidence 99999999999999999999999999999999999999875 899999999975 677889999999 899999999877
Q ss_pred hH
Q 046786 265 DV 266 (604)
Q Consensus 265 ~~ 266 (604)
++
T Consensus 227 ~~ 228 (233)
T cd03258 227 EV 228 (233)
T ss_pred HH
Confidence 65
No 50
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.8e-44 Score=352.16 Aligned_cols=199 Identities=34% Similarity=0.588 Sum_probs=174.1
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--hccccEEEEecCCCCCCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--EVKRRTGFVAQNNVFYPH 125 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--~~~~~i~yv~Q~~~l~~~ 125 (604)
++.+|+|+|+++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. ..++.++|++|++.+++.
T Consensus 12 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~ 86 (213)
T cd03259 12 SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER-----PDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPH 86 (213)
T ss_pred CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEcCcCchhhccEEEEcCchhhccC
Confidence 3569999999999999999999999999999999999985 579999999998743 245679999999999999
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 046786 126 LTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPT 205 (604)
Q Consensus 126 lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPt 205 (604)
+|++||+.+..... ....++..++++++++.+||.+..+ +.++.||||||||++||++|+.+|++++|||||
T Consensus 87 ~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt 158 (213)
T cd03259 87 LTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLN-----RYPHELSGGQQQRVALARALAREPSLLLLDEPL 158 (213)
T ss_pred CcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhh-----cChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999999875432 1234444567889999999987666 445699999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 206 SGLDSTMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 206 sgLD~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
+|||+.++..+.+.|+++++ .|+|||+++|++. .+.+++|++++| ++|++++.|
T Consensus 159 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l-~~G~i~~~g 213 (213)
T cd03259 159 SALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVM-NEGRIVQVG 213 (213)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEE-ECCEEEecC
Confidence 99999999999999999987 4999999999975 577899999999 899998765
No 51
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=1.1e-43 Score=353.00 Aligned_cols=214 Identities=31% Similarity=0.519 Sum_probs=181.3
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh---hc
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---EV 109 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---~~ 109 (604)
++..|+.+.+........+|+|+|+++++||+++|+|||||||||||++|+|+.+ |++|+|.++|+++.. .+
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~~~~ 76 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE-----PDAGFATVDGFDVVKEPAEA 76 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCCceEEECCEEcccCHHHH
Confidence 3445655544322112269999999999999999999999999999999999985 579999999998753 45
Q ss_pred cccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHH
Q 046786 110 KRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIG 189 (604)
Q Consensus 110 ~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia 189 (604)
++.++|++|++.+++.+||+||+.+....+ .....+..++++++++.+|+.+..++ .++.||||||||++||
T Consensus 77 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~la 148 (218)
T cd03266 77 RRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDR-----RVGGFSTGMRQKVAIA 148 (218)
T ss_pred HhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhh-----hhhhcCHHHHHHHHHH
Confidence 678999999999999999999998865442 23344555678999999999877664 4569999999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 190 QELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 190 ~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+...+|++++| ++|++++.|
T Consensus 149 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l-~~G~i~~~~ 218 (218)
T cd03266 149 RALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVL-HRGRVVYEG 218 (218)
T ss_pred HHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEE-ECCEEeecC
Confidence 9999999999999999999999999999999999877999999999975 677889999999 899998754
No 52
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=2e-43 Score=355.32 Aligned_cols=207 Identities=30% Similarity=0.513 Sum_probs=179.2
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h-ccccEEEEecCCCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E-VKRRTGFVAQNNVF 122 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~-~~~~i~yv~Q~~~l 122 (604)
++.+|+|+|+++++||+++|+|||||||||||++|+|+++ |++|+|.++|+++.. . .++.++|++|++.+
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l 86 (236)
T cd03219 12 GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR-----PTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRL 86 (236)
T ss_pred CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCceEEECCEECCCCCHHHHHhcCEEEEeccccc
Confidence 3569999999999999999999999999999999999985 579999999998743 2 24569999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCC-------CCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhC
Q 046786 123 YPHLTVAETLVFTALLRLPNS-------LKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLIN 195 (604)
Q Consensus 123 ~~~lTv~e~l~f~~~~~~~~~-------~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~ 195 (604)
++.+||+||+.+......... ....+..++++++++.+|+.+..+ +.+++||||||||++||++|+.+
T Consensus 87 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrv~la~al~~~ 161 (236)
T cd03219 87 FPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLAD-----RPAGELSYGQQRRLEIARALATD 161 (236)
T ss_pred ccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhh-----CChhhCCHHHHHHHHHHHHHhcC
Confidence 999999999998764321110 013344567889999999987666 44669999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhH
Q 046786 196 PSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266 (604)
Q Consensus 196 p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~ 266 (604)
|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+..++|++++| ++|+++..|+++++
T Consensus 162 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l-~~G~i~~~~~~~~~ 230 (236)
T cd03219 162 PKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVL-DQGRVIAEGTPDEV 230 (236)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEE-eCCEEEeecCHHHh
Confidence 9999999999999999999999999999878999999999986 677889999999 89999999988765
No 53
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-43 Score=356.41 Aligned_cols=218 Identities=27% Similarity=0.455 Sum_probs=183.5
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--hcc
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--EVK 110 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--~~~ 110 (604)
++..|+.+.+ +++.+|+|+|+++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.. ..+
T Consensus 3 l~~~~l~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~~~~ 73 (239)
T cd03296 3 IEVRNVSKRF----GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER-----PDSGTILFGGEDATDVPVQE 73 (239)
T ss_pred EEEEeEEEEE----CCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCcCCccc
Confidence 4445555444 23569999999999999999999999999999999999985 579999999998743 234
Q ss_pred ccEEEEecCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHH
Q 046786 111 RRTGFVAQNNVFYPHLTVAETLVFTALLRLP-NSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIG 189 (604)
Q Consensus 111 ~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia 189 (604)
+.++|++|++.+++.+||+||+.+....+.. ......+..++++++++.+||.+..+ +.+.+||||||||++||
T Consensus 74 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrl~la 148 (239)
T cd03296 74 RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLAD-----RYPAQLSGGQRQRVALA 148 (239)
T ss_pred cceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhh-----cChhhCCHHHHHHHHHH
Confidence 6799999999999999999999987543211 00123334456889999999987666 44569999999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhH
Q 046786 190 QELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266 (604)
Q Consensus 190 ~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~ 266 (604)
++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+...+|++++| ++|++++.|+++++
T Consensus 149 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~~G~i~~~~~~~~~ 224 (239)
T cd03296 149 RALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVM-NKGRIEQVGTPDEV 224 (239)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-ECCeEEEecCHHHH
Confidence 9999999999999999999999999999999999875 899999999985 577889999999 89999999988765
No 54
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-43 Score=349.56 Aligned_cols=199 Identities=30% Similarity=0.563 Sum_probs=175.8
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLT 127 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lT 127 (604)
++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ |++|+|.++|+++....++.++|++|++.+++.+|
T Consensus 12 ~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~t 86 (210)
T cd03269 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL-----PDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMK 86 (210)
T ss_pred CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCCchhHHHHccEEEeccCCcCCcCCc
Confidence 4569999999999999999999999999999999999875 57999999999876555678999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 046786 128 VAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSG 207 (604)
Q Consensus 128 v~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsg 207 (604)
++||+.+....+ .....+..++++++++.+|+.+..++ .+++||||||||++||++|+.+|++++|||||+|
T Consensus 87 v~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~ 158 (210)
T cd03269 87 VIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANK-----RVEELSKGNQQKVQFIAAVIHDPELLILDEPFSG 158 (210)
T ss_pred HHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhC-----cHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 999999876543 12334445678999999999876664 4569999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 208 LDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 208 LD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
||+.++..+.+.|++++++|+|||+++|++. .+.+++|++++| ++|++++.|
T Consensus 159 LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l-~~g~i~~~~ 210 (210)
T cd03269 159 LDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLL-NKGRAVLYG 210 (210)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEE-eCCEEEecC
Confidence 9999999999999999877899999999975 577889999999 899998764
No 55
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-43 Score=363.28 Aligned_cols=232 Identities=26% Similarity=0.449 Sum_probs=190.0
Q ss_pred heeeeEEEEEeccc-cccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 33 LKKVNMLVIIKNSD-EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 33 ~~~~~~~~~~~~~~-~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
++..|+.+.+.... ..+.+|+|||+++++||++||+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~~~ 77 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK-----PTSGKIIIDGVDITDKKVK 77 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCccEEEECCEECCCcCcc
Confidence 44556555443211 12569999999999999999999999999999999999985 579999999998742
Q ss_pred --hccccEEEEecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCccCCCcCHHH
Q 046786 108 --EVKRRTGFVAQNNV-FYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLA--RCRNSIIGGRLVRGLSGGE 182 (604)
Q Consensus 108 --~~~~~i~yv~Q~~~-l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~vg~~~~~~LSgGe 182 (604)
..++.+|||+|++. .+...||+||+.|..... ..++++..++++++++.+||. +..| +.++.|||||
T Consensus 78 ~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~~LSgGq 149 (287)
T PRK13637 78 LSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKD-----KSPFELSGGQ 149 (287)
T ss_pred HHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhcc-----CCcccCCHHH
Confidence 34678999999863 233579999999875432 245566667889999999996 4455 5567999999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 183 RKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 183 rqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++..++|++++| ++|++++.|
T Consensus 150 ~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l-~~G~i~~~g 227 (287)
T PRK13637 150 KRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVM-NKGKCELQG 227 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE-ECCEEEEEC
Confidence 99999999999999999999999999999999999999999875 999999999975 577889999999 899999999
Q ss_pred ChhhHHH---HHHhCCCCCCC
Q 046786 262 KGEDVIN---YFAGIGYVPSV 279 (604)
Q Consensus 262 ~~~~~~~---~f~~~g~~~p~ 279 (604)
+++++.+ .+...|+..|.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~ 248 (287)
T PRK13637 228 TPREVFKEVETLESIGLAVPQ 248 (287)
T ss_pred CHHHHHhCHHHHHHcCCCCCh
Confidence 9988743 23445555443
No 56
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=3.6e-44 Score=332.88 Aligned_cols=200 Identities=33% Similarity=0.525 Sum_probs=177.8
Q ss_pred eceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--hccccEEEEecCCCCCCCCCHHH
Q 046786 53 KGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--EVKRRTGFVAQNNVFYPHLTVAE 130 (604)
Q Consensus 53 ~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--~~~~~i~yv~Q~~~l~~~lTv~e 130 (604)
-..+..|++||++||+||||||||||||+|+|... |.+|+|.+||++.+. -..|-+++++|+.++|.+|||.+
T Consensus 16 ~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~-----P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~q 90 (231)
T COG3840 16 MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET-----PASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQ 90 (231)
T ss_pred EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccC-----CCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhh
Confidence 45778999999999999999999999999999985 679999999999854 45678999999999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 046786 131 TLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDS 210 (604)
Q Consensus 131 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~ 210 (604)
|+.++..-.+ .. ..+.+++++.++..+||..+.+ +.+.+|||||||||++||+|+.+-+|++||||+|.|||
T Consensus 91 NigLGl~P~L--kL-~a~~r~~v~~aa~~vGl~~~~~-----RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP 162 (231)
T COG3840 91 NIGLGLSPGL--KL-NAEQREKVEAAAAQVGLAGFLK-----RLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDP 162 (231)
T ss_pred hhcccCCccc--cc-CHHHHHHHHHHHHHhChhhHhh-----hCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCH
Confidence 9988753211 12 3455678999999999999877 56779999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 211 TMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 211 ~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
.-+.+++.++.++++ ++.|++++||+|+ ++..+.|+++++ ++||+.+.|+.++..
T Consensus 163 ~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl-~~Gri~~~g~~~~~~ 218 (231)
T COG3840 163 ALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFL-DNGRIAAQGSTQELL 218 (231)
T ss_pred HHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEE-eCCEEEeeccHHHHh
Confidence 999999999999986 5899999999997 688999999999 899999999887653
No 57
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=3.3e-43 Score=352.82 Aligned_cols=204 Identities=28% Similarity=0.526 Sum_probs=179.0
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h-ccccEEEEecCCCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E-VKRRTGFVAQNNVF 122 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~-~~~~i~yv~Q~~~l 122 (604)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ |++|+|.++|+++.. . .++.++|++|++.+
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~ 86 (232)
T cd03218 12 KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK-----PDSGKILLDGQDITKLPMHKRARLGIGYLPQEASI 86 (232)
T ss_pred CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEecccCCHhHHHhccEEEecCCccc
Confidence 4569999999999999999999999999999999999985 579999999998642 2 24579999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEe
Q 046786 123 YPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLD 202 (604)
Q Consensus 123 ~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLD 202 (604)
++.+||+||+.+....+ .....+..++++++++.+|+.+..+ +.++.||||||||++||++|+.+|++|+||
T Consensus 87 ~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrl~la~al~~~p~llllD 158 (232)
T cd03218 87 FRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRK-----SKASSLSGGERRRVEIARALATNPKFLLLD 158 (232)
T ss_pred cccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 99999999999865432 1233444567889999999987666 445699999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhH
Q 046786 203 EPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266 (604)
Q Consensus 203 EPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~ 266 (604)
|||+|||+.++..+.+.|++++++|+|||+++|++. .+...+|++++| ++|+++..|+++++
T Consensus 159 EPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l-~~G~i~~~~~~~~~ 220 (232)
T cd03218 159 EPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYII-YEGKVLAEGTPEEI 220 (232)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEE-ECCeEEEEeCHHHh
Confidence 999999999999999999999888999999999986 688899999999 89999999988765
No 58
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=2.5e-43 Score=367.33 Aligned_cols=215 Identities=25% Similarity=0.437 Sum_probs=187.7
Q ss_pred eeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh---hcc
Q 046786 34 KKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---EVK 110 (604)
Q Consensus 34 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---~~~ 110 (604)
+..|++..+ +++.+|+|+||++++||+++|+||||||||||||+|+|+++ |++|+|.++|+++.. ..+
T Consensus 4 ~~~~l~~~~----~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~-----~~~G~i~i~g~~~~~~~~~~~ 74 (301)
T TIGR03522 4 RVSSLTKLY----GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP-----PDSGSVQVCGEDVLQNPKEVQ 74 (301)
T ss_pred EEEEEEEEE----CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEcccChHHHH
Confidence 444554443 34679999999999999999999999999999999999985 679999999998743 356
Q ss_pred ccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHH
Q 046786 111 RRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQ 190 (604)
Q Consensus 111 ~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~ 190 (604)
+.+||+||++.+++.+||.||+.+.+.++ ..+.++..++++++++.+||.+..|+. ++.||||||||++||+
T Consensus 75 ~~ig~~~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~la~ 146 (301)
T TIGR03522 75 RNIGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKK-----IGQLSKGYRQRVGLAQ 146 (301)
T ss_pred hceEEecCCCCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCc-----hhhCCHHHHHHHHHHH
Confidence 78999999999999999999999877653 233444556789999999999877744 5699999999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHHH
Q 046786 191 ELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVIN 268 (604)
Q Consensus 191 ~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~~ 268 (604)
+|+++|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+++|++++| ++|++++.|+++++..
T Consensus 147 al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l-~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 147 ALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIII-NKGKIVADKKLDELSA 221 (301)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEE-ECCEEEEeCCHHHHHH
Confidence 99999999999999999999999999999999975 799999999985 688999999999 8999999999998765
No 59
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=3.7e-43 Score=347.97 Aligned_cols=199 Identities=30% Similarity=0.546 Sum_probs=174.6
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--hccccEEEEecCCCCCCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--EVKRRTGFVAQNNVFYPH 125 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--~~~~~i~yv~Q~~~l~~~ 125 (604)
++.+|+|+|+++++||+++|+|||||||||||++|+|+++ |++|+|.++|+++.. ..++.++|++|++.+++.
T Consensus 12 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~ 86 (213)
T cd03301 12 NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE-----PTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPH 86 (213)
T ss_pred CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCcCCcccceEEEEecChhhccC
Confidence 3569999999999999999999999999999999999985 579999999998743 234579999999999999
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 046786 126 LTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPT 205 (604)
Q Consensus 126 lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPt 205 (604)
+|++||+.+..... ....++..++++++++.+|+.+..+ +.++.||||||||++||++|+.+|++++|||||
T Consensus 87 ~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qr~~laral~~~p~llllDEPt 158 (213)
T cd03301 87 MTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLD-----RKPKQLSGGQRQRVALGRAIVREPKVFLMDEPL 158 (213)
T ss_pred CCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999999875432 2334455567889999999987766 445699999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 206 SGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 206 sgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
+|||+.++..+.+.|++++++ |+|||+++|++. ++...+|++++| ++|+++++|
T Consensus 159 ~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l-~~g~~~~~g 213 (213)
T cd03301 159 SNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVM-NDGQIQQIG 213 (213)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEE-ECCEEEecC
Confidence 999999999999999999874 899999999975 677889999999 899999876
No 60
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=3.6e-43 Score=349.78 Aligned_cols=202 Identities=33% Similarity=0.517 Sum_probs=177.8
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh---hccccEEEEecCCCCCCC
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---EVKRRTGFVAQNNVFYPH 125 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---~~~~~i~yv~Q~~~l~~~ 125 (604)
+++|+|+|+++++||+++|+||||||||||+|+|+|+.+ |++|+|.++|+++.. ..++.++|++|++.+++.
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~ 89 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR-----PTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDE 89 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEecccchHHHhhhEEEecCcCCcccc
Confidence 569999999999999999999999999999999999985 579999999998743 356679999999999999
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 046786 126 LTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPT 205 (604)
Q Consensus 126 lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPt 205 (604)
+|++||+.+..... ..+.++..++++++++.+||.+..++. +++||||||||++||++|+.+|++++|||||
T Consensus 90 ~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEP~ 161 (220)
T cd03263 90 LTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKR-----ARTLSGGMKRKLSLAIALIGGPSVLLLDEPT 161 (220)
T ss_pred CCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhCh-----hhhCCHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 99999999876543 123344456788999999998776644 5699999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhH
Q 046786 206 SGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266 (604)
Q Consensus 206 sgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~ 266 (604)
+|||+.+...+.+.|+++++ ++|||+++|++. .+...+|++++| ++|+++..|+++++
T Consensus 162 ~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l-~~g~i~~~~~~~~~ 219 (220)
T cd03263 162 SGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIM-SDGKLRCIGSPQEL 219 (220)
T ss_pred CCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEE-ECCEEEecCCHHHc
Confidence 99999999999999999986 599999999986 577889999999 89999999987754
No 61
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-43 Score=362.77 Aligned_cols=231 Identities=26% Similarity=0.410 Sum_probs=190.0
Q ss_pred heeeeEEEEEeccc-cccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 33 LKKVNMLVIIKNSD-EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 33 ~~~~~~~~~~~~~~-~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
++..|+.+.+.... ..+.+|+|||+++++||+++|+||||||||||+|+|+|+.+ |++|+|.++|+++..
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~~~~~ 77 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ-----PTSGTVTIGERVITAGKKN 77 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEECcccccc
Confidence 34556655553221 12569999999999999999999999999999999999985 579999999998731
Q ss_pred ----hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCcCH
Q 046786 108 ----EVKRRTGFVAQNN--VFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLA-RCRNSIIGGRLVRGLSG 180 (604)
Q Consensus 108 ----~~~~~i~yv~Q~~--~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSg 180 (604)
..++.+|||+|++ .++ ..||+||+.|+.... ..+.++..++++++++.+||. +..+ +.++.|||
T Consensus 78 ~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~~~~LSg 148 (290)
T PRK13634 78 KKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLA-----RSPFELSG 148 (290)
T ss_pred chHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhh-----CCcccCCH
Confidence 3456899999986 455 469999999875432 234555556789999999997 4455 45679999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEE
Q 046786 181 GERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLY 259 (604)
Q Consensus 181 GerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~ 259 (604)
||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||++. .+...+|++++| ++|++++
T Consensus 149 Gq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l-~~G~i~~ 226 (290)
T PRK13634 149 GQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVM-HKGTVFL 226 (290)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE-ECCEEEE
Confidence 9999999999999999999999999999999999999999999865 999999999976 678899999999 8999999
Q ss_pred ecChhhHH---HHHHhCCCCCCC
Q 046786 260 FGKGEDVI---NYFAGIGYVPSV 279 (604)
Q Consensus 260 ~G~~~~~~---~~f~~~g~~~p~ 279 (604)
.|+++++. ..+...+..+|.
T Consensus 227 ~g~~~~~~~~~~~~~~~~~~~~~ 249 (290)
T PRK13634 227 QGTPREIFADPDELEAIGLDLPE 249 (290)
T ss_pred ECCHHHHhcCHHHHHHCCCCCCH
Confidence 99988764 334555665444
No 62
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=2.5e-43 Score=378.27 Aligned_cols=219 Identities=29% Similarity=0.453 Sum_probs=187.6
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+++.+ +++.+|+|+||++++||+++|+||||||||||||+|+|+++ |++|+|.++|+++..
T Consensus 3 ~L~~~nls~~y----~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~-----p~sG~I~l~G~~i~~~~~~ 73 (402)
T PRK09536 3 MIDVSDLSVEF----GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT-----PTAGTVLVAGDDVEALSAR 73 (402)
T ss_pred eEEEeeEEEEE----CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC-----CCCcEEEECCEEcCcCCHH
Confidence 35556665544 34679999999999999999999999999999999999985 579999999998743
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHH
Q 046786 108 EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPN-SLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRI 186 (604)
Q Consensus 108 ~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 186 (604)
+.++.+|||+|+..+++.+||+||+.++....... ....++.+++++++++.+|+.+..+ +.+++||||||||+
T Consensus 74 ~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~-----~~~~~LSgGerQRv 148 (402)
T PRK09536 74 AASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFAD-----RPVTSLSGGERQRV 148 (402)
T ss_pred HHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhc-----CChhhCCHHHHHHH
Confidence 45678999999999988999999998864321100 1112344567899999999988777 44669999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhH
Q 046786 187 SIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266 (604)
Q Consensus 187 sia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~ 266 (604)
.|||+|+++|++|+|||||+|||+.++.++++.|++++++|+|||+++|++. .+.+++|++++| ++|++++.|+++++
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l-~~G~iv~~G~~~ev 226 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLL-ADGRVRAAGPPADV 226 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEE-ECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999878999999999975 678999999999 89999999999875
No 63
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=3.4e-43 Score=349.45 Aligned_cols=193 Identities=36% Similarity=0.582 Sum_probs=168.3
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-------h-ccccEEEEecCC
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-------E-VKRRTGFVAQNN 120 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-------~-~~~~i~yv~Q~~ 120 (604)
+.+|+|+|+++++||+++|+||||||||||||+|+|+++ |++|+|.++|+++.. . .++.++|++|++
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~ 91 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR-----PTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSF 91 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC-----CCceeEEECCEehhhcchhHHHHHHhhcEEEEeecc
Confidence 579999999999999999999999999999999999985 579999999998742 1 245799999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEE
Q 046786 121 VFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLF 200 (604)
Q Consensus 121 ~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~ill 200 (604)
.+++.+||+||+.+....+ .....+..++++++++.+||.+..+ +.++.||||||||++||++|+.+|++|+
T Consensus 92 ~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~la~al~~~p~lll 163 (218)
T cd03255 92 NLLPDLTALENVELPLLLA---GVPKKERRERAEELLERVGLGDRLN-----HYPSELSGGQQQRVAIARALANDPKIIL 163 (218)
T ss_pred ccCCCCcHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhh-----cChhhcCHHHHHHHHHHHHHccCCCEEE
Confidence 9999999999999876543 1233344567889999999987666 4456999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecCCeE
Q 046786 201 LDEPTSGLDSTMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSDGSS 257 (604)
Q Consensus 201 LDEPtsgLD~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~ 257 (604)
|||||+|||+.++..+.+.|+++++ .|+|||+++|++. .+. .+|++++| ++|++
T Consensus 164 LDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~-~~d~v~~l-~~G~i 218 (218)
T cd03255 164 ADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LAE-YADRIIEL-RDGKI 218 (218)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHh-hhcEEEEe-eCCcC
Confidence 9999999999999999999999987 5999999999986 454 89999999 88864
No 64
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=6.5e-43 Score=352.64 Aligned_cols=216 Identities=27% Similarity=0.488 Sum_probs=183.9
Q ss_pred eeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh------
Q 046786 34 KKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA------ 107 (604)
Q Consensus 34 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~------ 107 (604)
+..|+.+.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|.++ |++|+|.++|+++..
T Consensus 3 ~~~~l~~~~----~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~~~~ 73 (240)
T PRK09493 3 EFKNVSKHF----GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE-----ITSGDLIVDGLKVNDPKVDER 73 (240)
T ss_pred EEEeEEEEE----CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCcCChhHH
Confidence 444554443 23569999999999999999999999999999999999875 579999999998742
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHH
Q 046786 108 EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRIS 187 (604)
Q Consensus 108 ~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvs 187 (604)
..++.++|++|++.+++.+||+||+.+..... ......+..+++.++++.+||.+..+ +.++.||||||||++
T Consensus 74 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LS~G~~qrv~ 146 (240)
T PRK09493 74 LIRQEAGMVFQQFYLFPHLTALENVMFGPLRV--RGASKEEAEKQARELLAKVGLAERAH-----HYPSELSGGQQQRVA 146 (240)
T ss_pred HHhhceEEEecccccCCCCcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCChHHHh-----cChhhcCHHHHHHHH
Confidence 34567999999999999999999998864211 12234445567889999999987666 446699999999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 188 IGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 188 ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+...+|++++| ++|++++.|+++++.
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l-~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 147 IARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFI-DKGRIAEDGDPQVLI 224 (240)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-ECCEEEeeCCHHHHh
Confidence 999999999999999999999999999999999999877999999999986 577889999999 899999999887653
No 65
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.3e-43 Score=353.87 Aligned_cols=207 Identities=29% Similarity=0.496 Sum_probs=177.0
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-------hccccEEEEecCCC
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-------EVKRRTGFVAQNNV 121 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-------~~~~~i~yv~Q~~~ 121 (604)
+.+|+|+|+++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.. ..++.++|++|++.
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~ 88 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE-----PTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFN 88 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCCceEEECCEeccccCHhHHHHHHhccEEEcccCc
Confidence 569999999999999999999999999999999999985 579999999998742 24567999999999
Q ss_pred CCCCCCHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCC
Q 046786 122 FYPHLTVAETLVFTALLRL-----PNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINP 196 (604)
Q Consensus 122 l~~~lTv~e~l~f~~~~~~-----~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p 196 (604)
+++.+||+||+.+...... .......+..+++.++++.+||.+..+ +.+++|||||||||+||++|+.+|
T Consensus 89 ~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~la~al~~~p 163 (241)
T cd03256 89 LIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAY-----QRADQLSGGQQQRVAIARALMQQP 163 (241)
T ss_pred ccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhC-----CCcccCCHHHHHHHHHHHHHhcCC
Confidence 9999999999987542110 001112234457888999999987665 456699999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 197 SLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 197 ~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+..++|++++| ++|++++.|++++..
T Consensus 164 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l-~~G~i~~~~~~~~~~ 233 (241)
T cd03256 164 KLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGL-KDGRIVFDGPPAELT 233 (241)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE-ECCEEEeecCHHHhh
Confidence 999999999999999999999999999864 899999999986 577899999999 899999999987753
No 66
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.3e-43 Score=366.56 Aligned_cols=232 Identities=23% Similarity=0.417 Sum_probs=191.8
Q ss_pred hheeeeEEEEEeccc-cccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh---
Q 046786 32 MLKKVNMLVIIKNSD-EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~-~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--- 107 (604)
+++..|+.+.+.... ..+.+|+|||+++++||+++|+||||||||||+|+|+|+++ |++|+|.++|.++..
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~-----p~~G~I~i~g~~~~~~~~ 95 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK-----SKYGTIQVGDIYIGDKKN 95 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEECCEEcccccc
Confidence 466677776654221 13469999999999999999999999999999999999985 579999999987631
Q ss_pred -----------------hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccc
Q 046786 108 -----------------EVKRRTGFVAQNN--VFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLA-RCRN 167 (604)
Q Consensus 108 -----------------~~~~~i~yv~Q~~--~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~ 167 (604)
.+++.+|||+|++ .+++ .||+||+.|+.... ..+.++..+++.++++.+||. +..+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~ 171 (320)
T PRK13631 96 NHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLDDSYLE 171 (320)
T ss_pred cccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCChhHhc
Confidence 3467899999986 4665 49999998875422 234555566789999999996 4444
Q ss_pred ccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCe
Q 046786 168 SIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNK 247 (604)
Q Consensus 168 ~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~ 247 (604)
+.+.+||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||++. .+...+|+
T Consensus 172 -----~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~~~adr 245 (320)
T PRK13631 172 -----RSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVADE 245 (320)
T ss_pred -----CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCE
Confidence 456799999999999999999999999999999999999999999999999878999999999975 57788999
Q ss_pred EEEEecCCeEEEecChhhHH---HHHHhCCCCCCC
Q 046786 248 ILLLSSDGSSLYFGKGEDVI---NYFAGIGYVPSV 279 (604)
Q Consensus 248 v~ll~~~G~~v~~G~~~~~~---~~f~~~g~~~p~ 279 (604)
+++| ++|+++..|+++++. +.+...|..+|.
T Consensus 246 i~vl-~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~ 279 (320)
T PRK13631 246 VIVM-DKGKILKTGTPYEIFTDQHIINSTSIQVPR 279 (320)
T ss_pred EEEE-ECCEEEEeCCHHHHhcCHHHHHHcCCCCCh
Confidence 9999 899999999998764 334555665544
No 67
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=6.5e-43 Score=358.71 Aligned_cols=218 Identities=22% Similarity=0.428 Sum_probs=185.7
Q ss_pred hhheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh---
Q 046786 31 DMLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--- 107 (604)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--- 107 (604)
.+++..|+++.+ +++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ |++|+|.++|+++..
T Consensus 6 ~~l~~~~l~~~~----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~~~~ 76 (269)
T PRK11831 6 NLVDMRGVSFTR----GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA-----PDHGEILFDGENIPAMSR 76 (269)
T ss_pred ceEEEeCeEEEE----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEccccCh
Confidence 356666766544 34569999999999999999999999999999999999985 579999999998742
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHH
Q 046786 108 ----EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGER 183 (604)
Q Consensus 108 ----~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 183 (604)
..++.++|++|+..+++.+||.||+.+...... ....++..+++.++++.+||.+..++ .++.||||||
T Consensus 77 ~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LSgGq~ 149 (269)
T PRK11831 77 SRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKL-----MPSELSGGMA 149 (269)
T ss_pred hhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhC-----ChhhCCHHHH
Confidence 135679999999999999999999988643221 12344445678889999999877664 4569999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecC
Q 046786 184 KRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGK 262 (604)
Q Consensus 184 qRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~ 262 (604)
||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+...+|++++| ++|++++.|+
T Consensus 150 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l-~~G~i~~~g~ 227 (269)
T PRK11831 150 RRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIV-ADKKIVAHGS 227 (269)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEE-ECCEEEEeCC
Confidence 9999999999999999999999999999999999999999865 899999999975 678889999999 8999999998
Q ss_pred hhhH
Q 046786 263 GEDV 266 (604)
Q Consensus 263 ~~~~ 266 (604)
++++
T Consensus 228 ~~~~ 231 (269)
T PRK11831 228 AQAL 231 (269)
T ss_pred HHHH
Confidence 8765
No 68
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=7.3e-43 Score=354.33 Aligned_cols=217 Identities=28% Similarity=0.502 Sum_probs=184.6
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+.+.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~~ 73 (250)
T PRK11264 3 AIEVKNLVKKFH----GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ-----PEAGTIRVGDITIDTARSL 73 (250)
T ss_pred cEEEeceEEEEC----CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEccccccc
Confidence 355566655442 3569999999999999999999999999999999999885 579999999988641
Q ss_pred --------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcC
Q 046786 108 --------EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLS 179 (604)
Q Consensus 108 --------~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 179 (604)
..++.++|++|++.+++.+|++||+.++..... ....++..+++.++++.+||.+..| +.++.||
T Consensus 74 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LS 146 (250)
T PRK11264 74 SQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKET-----SYPRRLS 146 (250)
T ss_pred cchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhh-----CChhhCC
Confidence 235679999999999999999999988543211 1234445567889999999987666 4466999
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEE
Q 046786 180 GGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLY 259 (604)
Q Consensus 180 gGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~ 259 (604)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+++|++++| ++|++++
T Consensus 147 ~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l-~~G~i~~ 224 (250)
T PRK11264 147 GGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFM-DQGRIVE 224 (250)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEE-ECCEEEE
Confidence 99999999999999999999999999999999999999999999877999999999975 677889999999 8999999
Q ss_pred ecChhhH
Q 046786 260 FGKGEDV 266 (604)
Q Consensus 260 ~G~~~~~ 266 (604)
.|+++++
T Consensus 225 ~~~~~~~ 231 (250)
T PRK11264 225 QGPAKAL 231 (250)
T ss_pred eCCHHHH
Confidence 9988765
No 69
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=7.7e-43 Score=349.05 Aligned_cols=220 Identities=44% Similarity=0.701 Sum_probs=182.3
Q ss_pred eeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-hcccc
Q 046786 34 KKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-EVKRR 112 (604)
Q Consensus 34 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-~~~~~ 112 (604)
...|+.+........+++|+|+|+++++||+++|+||||||||||+|+|+|+++++ .|++|+|.++|+++.. ..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~--~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 5 PWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGG--GTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred eeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCC--CCCceEEEECCEECChHHhccc
Confidence 34455554433222467999999999999999999999999999999999997521 1579999999998754 45678
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHH-HHHHcCCCccccccccCccCCCcCHHHHHHHHHHHH
Q 046786 113 TGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEA-VINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQE 191 (604)
Q Consensus 113 i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~-~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~ 191 (604)
++|++|++.+++.+||+||+.+......+.....+...+++++ .++.+++.+..+ +.++.||||||||++||++
T Consensus 83 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrl~lara 157 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGG-----NLVKGISGGERRRVSIAVQ 157 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhc-----ccccCcCHHHHHHHHHHHH
Confidence 9999999999999999999998765433222222333334555 899999987655 4566999999999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 192 LLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 192 L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++..++.+.+|++++| ++|++++.|
T Consensus 158 l~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l-~~G~i~~~g 226 (226)
T cd03234 158 LLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLL-SSGEIVYSG 226 (226)
T ss_pred HHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEE-eCCEEEecC
Confidence 999999999999999999999999999999998779999999999865788999999999 899998765
No 70
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=8.4e-44 Score=344.38 Aligned_cols=215 Identities=31% Similarity=0.549 Sum_probs=201.4
Q ss_pred eccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCC
Q 046786 43 KNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVF 122 (604)
Q Consensus 43 ~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l 122 (604)
.++.+++.+++|+||+++||++++++|||||||||.+|+|.|+++ |++|+|.++|.+++...+.+|||+|.+.-|
T Consensus 9 tK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle-----~~~G~I~~~g~~~~~~~~~rIGyLPEERGL 83 (300)
T COG4152 9 TKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE-----PTEGEITWNGGPLSQEIKNRIGYLPEERGL 83 (300)
T ss_pred hhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC-----ccCceEEEcCcchhhhhhhhcccChhhhcc
Confidence 455678899999999999999999999999999999999999986 689999999999988888999999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEe
Q 046786 123 YPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLD 202 (604)
Q Consensus 123 ~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLD 202 (604)
+|.+||.|.|.|.++++ ++++++.+++++.+|+.+++..... +++++||.|++|++.+..+++++|++++||
T Consensus 84 y~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~-----~kIk~LSKGnqQKIQfisaviHePeLlILD 155 (300)
T COG4152 84 YPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKT-----KKIKELSKGNQQKIQFISAVIHEPELLILD 155 (300)
T ss_pred CccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhcccccccc-----chHHHhhhhhhHHHHHHHHHhcCCCEEEec
Confidence 99999999999999986 6788899999999999999988776 456799999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHHHHHHh
Q 046786 203 EPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVINYFAG 272 (604)
Q Consensus 203 EPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~~~f~~ 272 (604)
||+|||||.+.+.+.+.+.+++++|.|||+|+|.+. .+.++||++++| ++|+.|.+|+.+++..-|..
T Consensus 156 EPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL-~kG~~V~~G~v~~ir~~~Gk 223 (300)
T COG4152 156 EPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLML-KKGQTVLYGTVEDIRRSFGK 223 (300)
T ss_pred CCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhhee-cCCceEEeccHHHHHHhcCC
Confidence 999999999999999999999999999999999975 789999999999 89999999999999886653
No 71
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.3e-43 Score=352.77 Aligned_cols=203 Identities=27% Similarity=0.550 Sum_probs=178.6
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----hccccEEEEecCCCCCC
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----EVKRRTGFVAQNNVFYP 124 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~ 124 (604)
+.+|+|+|+++++||+++|+|||||||||||++|+|+.+ |++|+|.++|+++.. ..++.++|++|++.+++
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~ 88 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE-----PTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFP 88 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCeEcCcCChHHhhcceEEEccCccccC
Confidence 569999999999999999999999999999999999985 579999999998742 34568999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEe
Q 046786 125 HLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLAR--CRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLD 202 (604)
Q Consensus 125 ~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLD 202 (604)
.+||+||+.+....+ ....++..+++.++++.+||.+ ..+ +.++.||||||||++||++|+.+|++++||
T Consensus 89 ~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~-----~~~~~LS~G~~qrv~laral~~~p~llllD 160 (242)
T cd03295 89 HMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFAD-----RYPHELSGGQQQRVGVARALAADPPLLLMD 160 (242)
T ss_pred CCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHh-----cChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 999999999875442 2234445567889999999985 444 456799999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhH
Q 046786 203 EPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266 (604)
Q Consensus 203 EPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~ 266 (604)
|||+|||+.++..+.+.|++++++ |+|||++||++. .+...+|++++| ++|++++.|+++++
T Consensus 161 EPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l-~~G~i~~~~~~~~~ 223 (242)
T cd03295 161 EPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIM-KNGEIVQVGTPDEI 223 (242)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEE-ECCEEEEecCHHHH
Confidence 999999999999999999999875 899999999985 577899999999 89999999988765
No 72
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=6.7e-43 Score=367.77 Aligned_cols=224 Identities=26% Similarity=0.459 Sum_probs=190.6
Q ss_pred hhheeeeEEEEEeccc---------cccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEEC
Q 046786 31 DMLKKVNMLVIIKNSD---------EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYN 101 (604)
Q Consensus 31 ~~~~~~~~~~~~~~~~---------~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~ 101 (604)
.+++..|+++.+.... +...+|+|||+++++||+++|+|+||||||||+++|+|+++ |++|+|.++
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~-----p~~G~I~~~ 81 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK-----ATDGEVAWL 81 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC-----CCCcEEEEC
Confidence 4567778777664321 13569999999999999999999999999999999999985 579999999
Q ss_pred CEeCCh-------hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccc
Q 046786 102 GKQFSA-------EVKRRTGFVAQNN--VFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLA-RCRNSIIG 171 (604)
Q Consensus 102 G~~~~~-------~~~~~i~yv~Q~~--~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg 171 (604)
|+++.. ..++.++||+|++ .++|.+||.|++.+......+ ..++++..+++.++++.+||. +..+
T Consensus 82 G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~---- 156 (331)
T PRK15079 82 GKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLIN---- 156 (331)
T ss_pred CEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhc----
Confidence 998742 2456899999997 588999999999987543211 245566667889999999995 3444
Q ss_pred CccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEE
Q 046786 172 GRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILL 250 (604)
Q Consensus 172 ~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~l 250 (604)
+++.+|||||||||+||++|+.+|++|++||||+|||+.++.++++.|+++.++ |.|+|++|||+. .+.+++|++++
T Consensus 157 -~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~v 234 (331)
T PRK15079 157 -RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLV 234 (331)
T ss_pred -CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 567799999999999999999999999999999999999999999999999874 999999999975 67788999999
Q ss_pred EecCCeEEEecChhhHH
Q 046786 251 LSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 251 l~~~G~~v~~G~~~~~~ 267 (604)
| ++|+++..|+++++.
T Consensus 235 l-~~G~ive~g~~~~i~ 250 (331)
T PRK15079 235 M-YLGHAVELGTYDEVY 250 (331)
T ss_pred E-ECCEEEEEcCHHHHH
Confidence 9 899999999988764
No 73
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=4.7e-43 Score=350.66 Aligned_cols=209 Identities=29% Similarity=0.427 Sum_probs=175.6
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh------hccccEEEEecCCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA------EVKRRTGFVAQNNV 121 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~------~~~~~i~yv~Q~~~ 121 (604)
++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++....|++|+|.++|+++.. ..++.++|++|++.
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 91 (227)
T cd03260 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPN 91 (227)
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCch
Confidence 356999999999999999999999999999999999997210012579999999998742 24568999999998
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEE
Q 046786 122 FYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFL 201 (604)
Q Consensus 122 l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illL 201 (604)
++ .+||+||+.+....+. ....++..++++++++.+|+.+..+..+. +++||||||||++||++|+.+|++|+|
T Consensus 92 ~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~qrv~la~al~~~p~llll 165 (227)
T cd03260 92 PF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---ALGLSGGQQQRLCLARALANEPEVLLL 165 (227)
T ss_pred hc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 88 7999999998754321 11222345678899999999876553320 479999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhh
Q 046786 202 DEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGED 265 (604)
Q Consensus 202 DEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~ 265 (604)
||||+|||+.++..+.+.|++++++ +|||+++|++. .+...+|++++| ++|++++.|++++
T Consensus 166 DEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l-~~G~i~~~g~~~~ 226 (227)
T cd03260 166 DEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFL-LNGRLVEFGPTEQ 226 (227)
T ss_pred eCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEE-eCCEEEEecCccc
Confidence 9999999999999999999999887 99999999985 677889999999 8999999998765
No 74
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-42 Score=357.69 Aligned_cols=228 Identities=25% Similarity=0.378 Sum_probs=188.0
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~ 108 (604)
++..|+++.+. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .
T Consensus 5 l~~~~l~~~~~---~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~~~~ 76 (274)
T PRK13647 5 IEVEDLHFRYK---DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL-----PQRGRVKVMGREVNAENEKW 76 (274)
T ss_pred EEEEEEEEEeC---CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCceEEEECCEECCCCCHHH
Confidence 45556555442 23469999999999999999999999999999999999985 579999999998742 3
Q ss_pred ccccEEEEecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHH
Q 046786 109 VKRRTGFVAQNNV-FYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRIS 187 (604)
Q Consensus 109 ~~~~i~yv~Q~~~-l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvs 187 (604)
.++.+||++|++. .++..||.||+.|..... ...+.+..+++.++++.+||.+..+ +.+..||||||||++
T Consensus 77 ~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~-----~~~~~LSgG~~qrv~ 148 (274)
T PRK13647 77 VRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRD-----KPPYHLSYGQKKRVA 148 (274)
T ss_pred HHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhc-----CChhhCCHHHHHHHH
Confidence 4567999999963 445679999999875432 2344455567899999999987666 456699999999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 188 IGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 188 ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.+|++++| ++|++++.|+++++.
T Consensus 149 laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l-~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 149 IAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVL-KEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEE-ECCEEEEECCHHHhc
Confidence 999999999999999999999999999999999999877999999999975 567889999999 899999999986542
Q ss_pred --HHHHhCCCCCC
Q 046786 268 --NYFAGIGYVPS 278 (604)
Q Consensus 268 --~~f~~~g~~~p 278 (604)
+.+...|...|
T Consensus 227 ~~~~~~~~~~~~~ 239 (274)
T PRK13647 227 DEDIVEQAGLRLP 239 (274)
T ss_pred CHHHHHHcCCCCC
Confidence 33444555443
No 75
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.6e-43 Score=359.22 Aligned_cols=230 Identities=23% Similarity=0.409 Sum_probs=190.9
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+++.+.+. +.+.+|+|+|++|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~~~~~ 77 (279)
T PRK13650 4 IIEVKNLTFKYKED-QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE-----AESGQIIIDGDLLTEENVW 77 (279)
T ss_pred eEEEEeEEEEcCCC-CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEECCcCcHH
Confidence 35555666554321 22459999999999999999999999999999999999985 579999999998742
Q ss_pred hccccEEEEecCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHH
Q 046786 108 EVKRRTGFVAQNN-VFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRI 186 (604)
Q Consensus 108 ~~~~~i~yv~Q~~-~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 186 (604)
..++.+|||+|++ ..++..||+||+.|..... ..++++..++++++++.+||.+..+ +.++.||||||||+
T Consensus 78 ~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~-----~~~~~LSgGq~qrv 149 (279)
T PRK13650 78 DIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKE-----REPARLSGGQKQRV 149 (279)
T ss_pred HHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhh-----CCcccCCHHHHHHH
Confidence 3567899999997 3667789999999875432 2445556677899999999987666 45669999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhh
Q 046786 187 SIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGED 265 (604)
Q Consensus 187 sia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~ 265 (604)
+||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||++. .+ ..+|++++| ++|+++..|++++
T Consensus 150 ~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l-~~G~i~~~g~~~~ 226 (279)
T PRK13650 150 AIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVM-KNGQVESTSTPRE 226 (279)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEE-ECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999875 999999999986 45 579999999 8999999999987
Q ss_pred HH---HHHHhCCCCCC
Q 046786 266 VI---NYFAGIGYVPS 278 (604)
Q Consensus 266 ~~---~~f~~~g~~~p 278 (604)
+. +.+...|+.+|
T Consensus 227 ~~~~~~~~~~~~~~~~ 242 (279)
T PRK13650 227 LFSRGNDLLQLGLDIP 242 (279)
T ss_pred HHcChHHHHHcCCCCc
Confidence 64 23445555533
No 76
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-42 Score=349.26 Aligned_cols=216 Identities=31% Similarity=0.447 Sum_probs=180.2
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+.+.+......+.+|+|+|+++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~i~~~~~~ 79 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT-----PTSGDVIFNGQPMSKLSSA 79 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEcCcCCHH
Confidence 35566666555322112569999999999999999999999999999999999985 579999999998742
Q ss_pred h---c-cccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHH
Q 046786 108 E---V-KRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGER 183 (604)
Q Consensus 108 ~---~-~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 183 (604)
. . ++.++|++|++.+++.+|++||+.+..... ....++..+++.++++.+||.+..+ +.++.||||||
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LSgG~~ 151 (233)
T PRK11629 80 AKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRAN-----HRPSELSGGER 151 (233)
T ss_pred HHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhh-----CChhhCCHHHH
Confidence 1 2 257999999999999999999999875432 2234445567899999999987666 34569999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecC
Q 046786 184 KRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGK 262 (604)
Q Consensus 184 qRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~ 262 (604)
||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||++. .+.. +|++++| .+|+++..|+
T Consensus 152 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~~~~-~~~~~~l-~~G~i~~~~~ 228 (233)
T PRK11629 152 QRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-LAKR-MSRQLEM-RDGRLTAELS 228 (233)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHh-hCEEEEE-ECCEEEEEec
Confidence 999999999999999999999999999999999999999976 5899999999986 4544 5899999 8999998886
Q ss_pred h
Q 046786 263 G 263 (604)
Q Consensus 263 ~ 263 (604)
.
T Consensus 229 ~ 229 (233)
T PRK11629 229 L 229 (233)
T ss_pred c
Confidence 4
No 77
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-42 Score=362.38 Aligned_cols=231 Identities=28% Similarity=0.465 Sum_probs=190.1
Q ss_pred heeeeEEEEEeccc-cccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCC-----
Q 046786 33 LKKVNMLVIIKNSD-EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS----- 106 (604)
Q Consensus 33 ~~~~~~~~~~~~~~-~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~----- 106 (604)
++..|+.+.+.... ....+|+|+|+++++||+++|+||||||||||+|+|+|+++ |++|+|.++|++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~-----p~~G~i~~~g~~~~~~~~~ 77 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL-----PDTGTIEWIFKDEKNKKKT 77 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEEeceeccccccc
Confidence 45556666553221 12469999999999999999999999999999999999986 57999999987541
Q ss_pred -----------------------hhccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC
Q 046786 107 -----------------------AEVKRRTGFVAQNN--VFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLG 161 (604)
Q Consensus 107 -----------------------~~~~~~i~yv~Q~~--~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lg 161 (604)
...++.+|||+|++ .++ ..||+||+.|+.... ..++++..+++.++++.+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~g 153 (305)
T PRK13651 78 KEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSM---GVSKEEAKKRAAKYIELVG 153 (305)
T ss_pred ccccccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcC
Confidence 13467899999985 344 469999999876432 3455666678999999999
Q ss_pred CC-ccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH
Q 046786 162 LA-RCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASS 240 (604)
Q Consensus 162 L~-~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~ 240 (604)
|. +..+ +.+..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||++. .
T Consensus 154 L~~~~~~-----~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~ 227 (305)
T PRK13651 154 LDESYLQ-----RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD-N 227 (305)
T ss_pred CChhhhh-----CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHH-H
Confidence 96 5555 557799999999999999999999999999999999999999999999999878999999999975 5
Q ss_pred HHhhcCeEEEEecCCeEEEecChhhHH---HHHHhCCCCCCC
Q 046786 241 LFYMFNKILLLSSDGSSLYFGKGEDVI---NYFAGIGYVPSV 279 (604)
Q Consensus 241 i~~~~d~v~ll~~~G~~v~~G~~~~~~---~~f~~~g~~~p~ 279 (604)
+.+.+|++++| ++|++++.|+++++. +.....|...|.
T Consensus 228 ~~~~adrv~vl-~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~ 268 (305)
T PRK13651 228 VLEWTKRTIFF-KDGKIIKDGDTYDILSDNKFLIENNMEPPK 268 (305)
T ss_pred HHHhCCEEEEE-ECCEEEEECCHHHHhcCHHHHHHCCCCCCh
Confidence 77899999999 899999999998874 334445555443
No 78
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-43 Score=346.11 Aligned_cols=213 Identities=28% Similarity=0.469 Sum_probs=189.5
Q ss_pred ccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-----hccccEEEEec
Q 046786 44 NSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-----EVKRRTGFVAQ 118 (604)
Q Consensus 44 ~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-----~~~~~i~yv~Q 118 (604)
++.+...+++|||+++++||+++|+||||||||||+|+|+|.++ |++|+|.++|++++. ..+..++.-||
T Consensus 12 k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~-----P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ 86 (250)
T COG0411 12 KRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK-----PSSGTVIFRGRDITGLPPHRIARLGIARTFQ 86 (250)
T ss_pred eecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc-----CCCceEEECCcccCCCCHHHHHhccceeecc
Confidence 34567889999999999999999999999999999999999996 689999999999853 24567999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhc--------CCCC-CCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHH
Q 046786 119 NNVFYPHLTVAETLVFTALLR--------LPNS-LKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIG 189 (604)
Q Consensus 119 ~~~l~~~lTv~e~l~f~~~~~--------~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia 189 (604)
...+|++|||.||+..++..+ .+.. ...++..+++.++|+.+||.+.+|...| +||+|||||+.||
T Consensus 87 ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LEIA 161 (250)
T COG0411 87 ITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLEIA 161 (250)
T ss_pred cccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHHHH
Confidence 999999999999999886533 1211 1345566789999999999999996654 8999999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHHH
Q 046786 190 QELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVIN 268 (604)
Q Consensus 190 ~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~~ 268 (604)
|||+++|++|+||||.+||.+..+.++.+.|+++++ .|.||+++.|+.. .++.++|++++| +.|++++.|+|+++.+
T Consensus 162 rALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl-~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 162 RALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVL-NYGEVIAEGTPEEVRN 239 (250)
T ss_pred HHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEec-cCCcCcccCCHHHHhc
Confidence 999999999999999999999999999999999998 4799999999986 789999999999 8999999999998753
No 79
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.8e-43 Score=358.53 Aligned_cols=207 Identities=27% Similarity=0.476 Sum_probs=180.2
Q ss_pred ccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h----ccccEEEEe
Q 046786 46 DEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E----VKRRTGFVA 117 (604)
Q Consensus 46 ~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~----~~~~i~yv~ 117 (604)
++.+.+|+|+|+++++||+++|+||||||||||||+|+|+++ |++|+|.++|+++.. . .++.++|++
T Consensus 34 ~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~-----p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~ 108 (269)
T cd03294 34 TGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE-----PTSGKVLIDGQDIAAMSRKELRELRRKKISMVF 108 (269)
T ss_pred cCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEccccChhhhhhhhcCcEEEEe
Confidence 456779999999999999999999999999999999999985 579999999998742 1 135799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCC
Q 046786 118 QNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPS 197 (604)
Q Consensus 118 Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~ 197 (604)
|++.+++.+||+||+.+..... .....+..++++++++.+||.+..++ .+++||||||||++||++|+.+|+
T Consensus 109 q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~Gq~qrv~lAral~~~p~ 180 (269)
T cd03294 109 QSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHK-----YPDELSGGMQQRVGLARALAVDPD 180 (269)
T ss_pred cCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhC-----CcccCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999875432 12334445678899999999877664 456999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 198 LLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 198 illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
+|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+..++|++++| ++|++++.|+++++.
T Consensus 181 illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l-~~G~i~~~g~~~~~~ 249 (269)
T cd03294 181 ILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIM-KDGRLVQVGTPEEIL 249 (269)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEE-ECCEEEEeCCHHHHH
Confidence 99999999999999999999999999864 899999999975 578899999999 899999999887664
No 80
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=4.3e-43 Score=354.43 Aligned_cols=207 Identities=29% Similarity=0.485 Sum_probs=176.4
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-------hccccEEEEecCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-------EVKRRTGFVAQNN 120 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-------~~~~~i~yv~Q~~ 120 (604)
++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ |++|+|.++|+++.. ..++.++|++|++
T Consensus 14 ~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~ 88 (243)
T TIGR02315 14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE-----PSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHY 88 (243)
T ss_pred CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCC
Confidence 4569999999999999999999999999999999999985 579999999998742 2456799999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhC
Q 046786 121 VFYPHLTVAETLVFTALLRLP-----NSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLIN 195 (604)
Q Consensus 121 ~l~~~lTv~e~l~f~~~~~~~-----~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~ 195 (604)
.+++.+||+||+.+....... .....++..+++.++++.+||.+..+ +.++.||||||||++||++|+.+
T Consensus 89 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrv~la~al~~~ 163 (243)
T TIGR02315 89 NLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAY-----QRADQLSGGQQQRVAIARALAQQ 163 (243)
T ss_pred cccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhc-----CCcccCCHHHHHHHHHHHHHhcC
Confidence 999999999999875321000 01112334567889999999987666 45669999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhH
Q 046786 196 PSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266 (604)
Q Consensus 196 p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~ 266 (604)
|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+++|++++| ++|++++.|+++++
T Consensus 164 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l-~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 164 PDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGL-KAGEIVFDGAPSEL 233 (243)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEE-ECCEEEecCCHHHh
Confidence 9999999999999999999999999999764 899999999986 577889999999 89999999988764
No 81
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=9e-43 Score=345.43 Aligned_cols=206 Identities=31% Similarity=0.495 Sum_probs=175.0
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-----
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----- 107 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----- 107 (604)
++..|+.+.+. +++.+|+|+|+++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 2 l~~~~l~~~~~---~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~~~~~~~~~ 73 (214)
T TIGR02673 2 IEFHNVSKAYP---GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT-----PSRGQVRIAGEDVNRLRGRQ 73 (214)
T ss_pred EEEEeeeEEeC---CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEcccCCHHH
Confidence 34455555442 23569999999999999999999999999999999999985 579999999998742
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHH
Q 046786 108 --EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKR 185 (604)
Q Consensus 108 --~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 185 (604)
.+++.++|++|++.+++.+|+.||+.+....+ ....+...++++++++.+||.+..+ +.++.||||||||
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qr 145 (214)
T TIGR02673 74 LPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKAD-----AFPEQLSGGEQQR 145 (214)
T ss_pred HHHHHhheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhh-----CChhhCCHHHHHH
Confidence 24568999999999999999999999875432 1233444567889999999987655 3456999999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCe
Q 046786 186 ISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGS 256 (604)
Q Consensus 186 vsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~ 256 (604)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. ++..++|++++| ++|+
T Consensus 146 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l-~~G~ 214 (214)
T TIGR02673 146 VAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIIL-DDGR 214 (214)
T ss_pred HHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEe-cCCC
Confidence 99999999999999999999999999999999999999877999999999985 677889999999 7774
No 82
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=7.9e-43 Score=347.66 Aligned_cols=203 Identities=32% Similarity=0.566 Sum_probs=175.2
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h-ccccEEEEecCCCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E-VKRRTGFVAQNNVF 122 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~-~~~~i~yv~Q~~~l 122 (604)
++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ |++|+|.++|+++.. . .++.++|++|++.+
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~ 86 (222)
T cd03224 12 KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP-----PRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRI 86 (222)
T ss_pred CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEcCCCCHHHHHhcCeEEecccccc
Confidence 3569999999999999999999999999999999999985 579999999998742 1 24679999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEE
Q 046786 123 YPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQL-GLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFL 201 (604)
Q Consensus 123 ~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illL 201 (604)
++.+|++||+.+...... ..+..+++.++++.+ ++.+..+ +.++.||||||||++||++|+.+|++++|
T Consensus 87 ~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~-----~~~~~LS~G~~qrv~laral~~~p~llll 156 (222)
T cd03224 87 FPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRK-----QLAGTLSGGEQQMLAIARALMSRPKLLLL 156 (222)
T ss_pred CCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhh-----CchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999998754321 122344567788888 5766555 44669999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 202 DEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 202 DEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
||||+|||+.++..+.+.|++++++|+|||+++|++. .+..++|++++| ++|+++..|+++++.
T Consensus 157 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l-~~G~i~~~~~~~~~~ 220 (222)
T cd03224 157 DEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVL-ERGRVVLEGTAAELL 220 (222)
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEe-eCCeEEEeCCHHHHh
Confidence 9999999999999999999999878899999999975 677899999999 899999999877653
No 83
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.6e-42 Score=343.55 Aligned_cols=194 Identities=29% Similarity=0.474 Sum_probs=170.2
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-------hccccEEEEecCCC
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-------EVKRRTGFVAQNNV 121 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-------~~~~~i~yv~Q~~~ 121 (604)
+.+|+|+|+++++||+++|+||||||||||+++|+|.++ |++|+|.++|+++.. ..++.++|++|++.
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~ 88 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL-----PTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFR 88 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEcccCCHHHHHHHHHheEEEecCch
Confidence 569999999999999999999999999999999999975 579999999998742 24567999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEE
Q 046786 122 FYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFL 201 (604)
Q Consensus 122 l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illL 201 (604)
+++.+|++||+.+....+ ....++..++++++++.+||.+..++ .+++||||||||++||++|+.+|++++|
T Consensus 89 ~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llll 160 (214)
T cd03292 89 LLPDRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHRA-----LPAELSGGEQQRVAIARAIVNSPTILIA 160 (214)
T ss_pred hccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhC-----ChhhcCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999875443 12344445678899999999876664 4569999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeE
Q 046786 202 DEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSS 257 (604)
Q Consensus 202 DEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~ 257 (604)
||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+++|++++| ++|++
T Consensus 161 DEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l-~~G~~ 214 (214)
T cd03292 161 DEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIAL-ERGKL 214 (214)
T ss_pred eCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-eCCcC
Confidence 9999999999999999999999877999999999975 577789999999 78864
No 84
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.3e-42 Score=342.92 Aligned_cols=195 Identities=33% Similarity=0.541 Sum_probs=171.9
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--hccccEEEEecCCCCCCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--EVKRRTGFVAQNNVFYPH 125 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--~~~~~i~yv~Q~~~l~~~ 125 (604)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ |++|+|.++|+++.. ..++.++|++|++.+++.
T Consensus 12 ~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~ 86 (208)
T cd03268 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK-----PDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPN 86 (208)
T ss_pred CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCCcccchHHHHhhEEEecCCCccCcc
Confidence 4579999999999999999999999999999999999985 579999999998743 345679999999999999
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 046786 126 LTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPT 205 (604)
Q Consensus 126 lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPt 205 (604)
+||+||+.+....+ .. ..++++++++.+||.+..++ .++.|||||||||+||++|+.+|++++|||||
T Consensus 87 ~tv~e~l~~~~~~~---~~----~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~llllDEPt 154 (208)
T cd03268 87 LTARENLRLLARLL---GI----RKKRIDEVLDVVGLKDSAKK-----KVKGFSLGMKQRLGIALALLGNPDLLILDEPT 154 (208)
T ss_pred CcHHHHHHHHHHhc---CC----cHHHHHHHHHHcCCHHHHhh-----hHhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 99999998875432 11 13467889999999877664 45699999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 206 SGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 206 sgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
+|||+.++..+.+.|++++++|+|||+++|++. .+...+|++++| ++|++++.|
T Consensus 155 ~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l-~~g~i~~~g 208 (208)
T cd03268 155 NGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGII-NKGKLIEEG 208 (208)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEE-ECCEEEecC
Confidence 999999999999999999888999999999986 577889999999 899998765
No 85
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=3.2e-42 Score=351.25 Aligned_cols=218 Identities=28% Similarity=0.453 Sum_probs=184.9
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+.+.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~~~~~ 75 (257)
T PRK10619 5 KLNVIDLHKRY----GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK-----PSEGSIVVNGQTINLVRDK 75 (257)
T ss_pred cEEEeeeEEEE----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEccccccc
Confidence 35556665544 23569999999999999999999999999999999999985 579999999987631
Q ss_pred -------------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-cccccCc
Q 046786 108 -------------EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCR-NSIIGGR 173 (604)
Q Consensus 108 -------------~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~vg~~ 173 (604)
..++.++|++|++.+++.+||+||+.++..... .....+..+++.++++.+|+.+.. + +
T Consensus 76 ~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~-----~ 148 (257)
T PRK10619 76 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQG-----K 148 (257)
T ss_pred ccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhh-----C
Confidence 335679999999999999999999987542111 123445566788999999997653 4 4
Q ss_pred cCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEec
Q 046786 174 LVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSS 253 (604)
Q Consensus 174 ~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~ 253 (604)
.+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+..++|++++| +
T Consensus 149 ~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~i~~l-~ 226 (257)
T PRK10619 149 YPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFL-H 226 (257)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEE-E
Confidence 56799999999999999999999999999999999999999999999999878999999999985 577789999999 8
Q ss_pred CCeEEEecChhhHH
Q 046786 254 DGSSLYFGKGEDVI 267 (604)
Q Consensus 254 ~G~~v~~G~~~~~~ 267 (604)
+|++++.|++++..
T Consensus 227 ~G~i~~~~~~~~~~ 240 (257)
T PRK10619 227 QGKIEEEGAPEQLF 240 (257)
T ss_pred CCEEEEeCCHHHhh
Confidence 99999999887653
No 86
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-42 Score=358.05 Aligned_cols=219 Identities=23% Similarity=0.397 Sum_probs=184.6
Q ss_pred heeeeEEEEEeccc-cccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 33 LKKVNMLVIIKNSD-EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 33 ~~~~~~~~~~~~~~-~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
++..|+.+.+.... ..+.+|+|||++|++||+++|+||||||||||+|+|+|+.+ |++|+|.++|+++..
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~-----p~~G~i~~~g~~i~~~~~~ 77 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK-----PTTGTVTVDDITITHKTKD 77 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEECcccccc
Confidence 44556666653221 13569999999999999999999999999999999999985 579999999998732
Q ss_pred ----hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCcCH
Q 046786 108 ----EVKRRTGFVAQNN--VFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLA-RCRNSIIGGRLVRGLSG 180 (604)
Q Consensus 108 ----~~~~~i~yv~Q~~--~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSg 180 (604)
..++.+|||+|++ .+++ .||.||+.|+.... ..+.++..+++.++++.+||. +..+ +.++.|||
T Consensus 78 ~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~~~~LSg 148 (286)
T PRK13646 78 KYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMS-----QSPFQMSG 148 (286)
T ss_pred chHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhh-----CCcccCCH
Confidence 3567899999986 4565 59999999875432 234555567789999999996 5555 45679999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecCCeEEE
Q 046786 181 GERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSDGSSLY 259 (604)
Q Consensus 181 GerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~ 259 (604)
|||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||++. .+.+++|++++| ++|++++
T Consensus 149 Gq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l-~~G~i~~ 226 (286)
T PRK13646 149 GQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVM-KEGSIVS 226 (286)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEE-ECCEEEE
Confidence 999999999999999999999999999999999999999999986 4999999999975 577889999999 8999999
Q ss_pred ecChhhHH
Q 046786 260 FGKGEDVI 267 (604)
Q Consensus 260 ~G~~~~~~ 267 (604)
.|+++++.
T Consensus 227 ~g~~~~~~ 234 (286)
T PRK13646 227 QTSPKELF 234 (286)
T ss_pred ECCHHHHH
Confidence 99988764
No 87
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-42 Score=357.17 Aligned_cols=219 Identities=23% Similarity=0.387 Sum_probs=183.1
Q ss_pred heeeeEEEEEeccc-cccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 33 LKKVNMLVIIKNSD-EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 33 ~~~~~~~~~~~~~~-~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
++..|++..+.... ..+.+|+|+|+++++||+++|+||||||||||||+|+|+++ |++|+|.++|+++..
T Consensus 3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~~~ 77 (287)
T PRK13641 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK-----PSSGTITIAGYHITPETGN 77 (287)
T ss_pred EEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEECcccccc
Confidence 34445555443211 12569999999999999999999999999999999999985 679999999998631
Q ss_pred ----hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCcCH
Q 046786 108 ----EVKRRTGFVAQNN--VFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLA-RCRNSIIGGRLVRGLSG 180 (604)
Q Consensus 108 ----~~~~~i~yv~Q~~--~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSg 180 (604)
..++.++|++|++ .++ .+||.||+.+..... ....++..++++++++.+||. +..+ +.+++|||
T Consensus 78 ~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~~~~LSg 148 (287)
T PRK13641 78 KNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLIS-----KSPFELSG 148 (287)
T ss_pred chHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhh-----CCcccCCH
Confidence 2456799999996 345 579999999865432 234455566789999999996 4555 45669999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEe
Q 046786 181 GERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYF 260 (604)
Q Consensus 181 GerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~ 260 (604)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.+|++++| ++|+++..
T Consensus 149 Gq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l-~~G~i~~~ 226 (287)
T PRK13641 149 GQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVL-EHGKLIKH 226 (287)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-ECCEEEEe
Confidence 9999999999999999999999999999999999999999999878999999999975 678899999999 89999999
Q ss_pred cChhhHH
Q 046786 261 GKGEDVI 267 (604)
Q Consensus 261 G~~~~~~ 267 (604)
|+++++.
T Consensus 227 g~~~~~~ 233 (287)
T PRK13641 227 ASPKEIF 233 (287)
T ss_pred CCHHHHh
Confidence 9988764
No 88
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-42 Score=349.09 Aligned_cols=217 Identities=26% Similarity=0.488 Sum_probs=184.6
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-----
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----- 107 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----- 107 (604)
++..|+.+.+ +++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ |++|+|.++|.++..
T Consensus 4 l~~~~l~~~~----~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~~~ 74 (241)
T PRK10895 4 LTAKNLAKAY----KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP-----RDAGNIIIDDEDISLLPLHA 74 (241)
T ss_pred EEEeCcEEEe----CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCCCCHHH
Confidence 4445555443 23569999999999999999999999999999999999985 579999999998742
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHH
Q 046786 108 EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRIS 187 (604)
Q Consensus 108 ~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvs 187 (604)
..++.++|++|++.+++.+||.||+.+..... .....++..++++++++.+|+.+..+ +.++.||||||||++
T Consensus 75 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~ 147 (241)
T PRK10895 75 RARRGIGYLPQEASIFRRLSVYDNLMAVLQIR--DDLSAEQREDRANELMEEFHIEHLRD-----SMGQSLSGGERRRVE 147 (241)
T ss_pred HHHhCeEEeccCCcccccCcHHHHHhhhhhcc--cccCHHHHHHHHHHHHHHcCCHHHhh-----cchhhCCHHHHHHHH
Confidence 23567999999999999999999998764332 12233445567889999999987655 446699999999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 188 IGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 188 ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+...+|++++| ++|++++.|+++++.
T Consensus 148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l-~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 148 IARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIV-SQGHLIAHGTPTEIL 225 (241)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEE-eCCeEEeeCCHHHHh
Confidence 999999999999999999999999999999999999878999999999975 678899999999 899999999987653
No 89
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=4.2e-42 Score=345.98 Aligned_cols=205 Identities=33% Similarity=0.519 Sum_probs=177.2
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh---hccccEEEEecCCCCCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---EVKRRTGFVAQNNVFYP 124 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---~~~~~i~yv~Q~~~l~~ 124 (604)
++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |++|+|.++|.++.. ..++.++|++|++.+++
T Consensus 13 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~ 87 (236)
T TIGR03864 13 ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV-----AQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDL 87 (236)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCEEcccCChhhhhhEEEeCCCCCCcc
Confidence 4569999999999999999999999999999999999985 579999999998742 23457999999998888
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 046786 125 HLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEP 204 (604)
Q Consensus 125 ~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEP 204 (604)
.+|++||+.+....+ ....++..+.+.++++.+||.+..++ .+..||||||||++||++|+.+|++++||||
T Consensus 88 ~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LS~G~~qrl~laral~~~p~llllDEP 159 (236)
T TIGR03864 88 DLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADD-----KVRELNGGHRRRVEIARALLHRPALLLLDEP 159 (236)
T ss_pred cCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999999998865432 22344445678899999999877664 4569999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHHH
Q 046786 205 TSGLDSTMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVIN 268 (604)
Q Consensus 205 tsgLD~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~~ 268 (604)
|+|||+.++..+.+.|+++++ +|+|||+++|++.. +. .+|++++| ++|+++..|+++++.+
T Consensus 160 ~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~-~~d~i~~l-~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 160 TVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-IE-ADDRLVVL-HRGRVLADGAAAELRG 221 (236)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-Hh-hCCEEEEE-eCCeEEEeCCHHHHHH
Confidence 999999999999999999985 58999999999864 44 59999999 8999999998876643
No 90
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-42 Score=362.16 Aligned_cols=228 Identities=23% Similarity=0.337 Sum_probs=188.8
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~ 108 (604)
++..|+++.+....+...+|+||||++++||+++|+||||||||||+++|+|++++.. .+++|+|.++|+++.. .
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~-~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPG-RVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCC-CCcceEEEECCEECCcCCHHH
Confidence 5666776666443333579999999999999999999999999999999999986321 2579999999998742 1
Q ss_pred c----cccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHH
Q 046786 109 V----KRRTGFVAQNN--VFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGE 182 (604)
Q Consensus 109 ~----~~~i~yv~Q~~--~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 182 (604)
. ++.++||+|++ .+.|.+|+.+++........ ....++..+++.++++.+||.+..+ .-++++++|||||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~--~l~~~p~~LSgGq 158 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPAS--RLDVYPHQLSGGM 158 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHH--HHhCCchhCCHHH
Confidence 1 24699999997 47899999999877654321 2345566678999999999975321 1125678999999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 183 RKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 183 rqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
||||+||+||+.+|++|++||||+|||+.++.++++.|+++++ .|.|+|++|||+. .+.+++|++++| ++|+++..|
T Consensus 159 ~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm-~~G~ive~g 236 (326)
T PRK11022 159 SQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVM-YAGQVVETG 236 (326)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE-ECCEEEEEC
Confidence 9999999999999999999999999999999999999999986 5999999999986 577899999999 899999999
Q ss_pred ChhhHH
Q 046786 262 KGEDVI 267 (604)
Q Consensus 262 ~~~~~~ 267 (604)
+++++.
T Consensus 237 ~~~~~~ 242 (326)
T PRK11022 237 KAHDIF 242 (326)
T ss_pred CHHHHh
Confidence 998875
No 91
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=2.8e-42 Score=343.54 Aligned_cols=209 Identities=32% Similarity=0.504 Sum_probs=173.3
Q ss_pred eeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h-
Q 046786 34 KKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E- 108 (604)
Q Consensus 34 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~- 108 (604)
+..|+.+.+....+.+.+|+|+|+++++||+++|+|||||||||||++|+|..+ |++|+|.++|+++.. .
T Consensus 3 ~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~~~~~~~ 77 (221)
T TIGR02211 3 KCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN-----PTSGEVLFNGQSLSKLSSNER 77 (221)
T ss_pred EEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEEhhhcCHhHH
Confidence 344555444322223569999999999999999999999999999999999985 579999999998742 1
Q ss_pred --cc-ccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHH
Q 046786 109 --VK-RRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKR 185 (604)
Q Consensus 109 --~~-~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 185 (604)
++ +.++|++|++.+++.+|++||+.+....+ .....+..+++.++++.+|+.+..+ +.++.||||||||
T Consensus 78 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qr 149 (221)
T TIGR02211 78 AKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRIN-----HRPSELSGGERQR 149 (221)
T ss_pred HHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhh-----CChhhCCHHHHHH
Confidence 22 57999999999999999999999865432 1233344557889999999987666 4456999999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEE
Q 046786 186 ISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSL 258 (604)
Q Consensus 186 vsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v 258 (604)
++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+ ..+|++++| ++|+++
T Consensus 150 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l-~~G~i~ 220 (221)
T TIGR02211 150 VAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEM-KDGQLF 220 (221)
T ss_pred HHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEE-eCCEec
Confidence 99999999999999999999999999999999999999864 899999999986 44 457999999 899875
No 92
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-42 Score=361.54 Aligned_cols=223 Identities=26% Similarity=0.423 Sum_probs=189.6
Q ss_pred hheeeeEEEEEeccc------cccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeC
Q 046786 32 MLKKVNMLVIIKNSD------EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQF 105 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~------~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~ 105 (604)
+++..|+++.+.... +...+|+|||++|++||++||+|+||||||||+++|+|+++ |++|+|.++|+++
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~-----p~~G~i~~~g~~l 79 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET-----PTGGELYYQGQDL 79 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCcEEEECCEEc
Confidence 466677776664321 13579999999999999999999999999999999999985 5699999999987
Q ss_pred Ch-------hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccC
Q 046786 106 SA-------EVKRRTGFVAQNN--VFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLAR-CRNSIIGGRLV 175 (604)
Q Consensus 106 ~~-------~~~~~i~yv~Q~~--~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~ 175 (604)
.. .+++.++||+|++ .+.|.+|+.+++........ ...+++..+++.++++.+||.+ ..+ +++
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~p 152 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYD-----RYP 152 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhc-----CCC
Confidence 42 2456899999997 58899999999987654321 2345566678999999999963 444 567
Q ss_pred CCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecC
Q 046786 176 RGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSD 254 (604)
Q Consensus 176 ~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~ 254 (604)
++|||||||||+||+||+.+|++|++||||+|||..++..+++.|++++++ |.|||++|||+. .+.+++|++++| ++
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm-~~ 230 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVM-YL 230 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-EC
Confidence 799999999999999999999999999999999999999999999999874 999999999975 677899999999 89
Q ss_pred CeEEEecChhhHHH
Q 046786 255 GSSLYFGKGEDVIN 268 (604)
Q Consensus 255 G~~v~~G~~~~~~~ 268 (604)
|+++..|+++++.+
T Consensus 231 G~ive~g~~~~~~~ 244 (327)
T PRK11308 231 GRCVEKGTKEQIFN 244 (327)
T ss_pred CEEEEECCHHHHhc
Confidence 99999999887753
No 93
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=4.5e-42 Score=348.06 Aligned_cols=218 Identities=27% Similarity=0.442 Sum_probs=181.0
Q ss_pred eeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh------
Q 046786 34 KKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA------ 107 (604)
Q Consensus 34 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~------ 107 (604)
+..|+.+.+ +++.+|+|+|+++++||+++|+||||||||||||+|+|+.++....+++|+|.++|+++..
T Consensus 3 ~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 3 EIENLNLFY----GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEE----CCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 444554443 2346999999999999999999999999999999999998621000128999999998742
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccCCCcCHHHH
Q 046786 108 EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLA----RCRNSIIGGRLVRGLSGGER 183 (604)
Q Consensus 108 ~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~~~~~~LSgGer 183 (604)
..++.++|++|++.+++ +|++||+.+....+. ..+.++..++++++++.+||. +..+ +.++.||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~~~~LSgG~~ 150 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLH-----DSALGLSGGQQ 150 (247)
T ss_pred HHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhh-----CCcccCCHHHH
Confidence 34568999999998888 999999998754431 123444556788999999997 4444 45679999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecCh
Q 046786 184 KRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKG 263 (604)
Q Consensus 184 qRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~ 263 (604)
||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+..++|++++| ++|++++.|++
T Consensus 151 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l-~~G~i~~~~~~ 227 (247)
T TIGR00972 151 QRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFF-YDGELVEYGPT 227 (247)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEE-ECCEEEEeCCH
Confidence 999999999999999999999999999999999999999987 489999999985 677899999999 89999999988
Q ss_pred hhH
Q 046786 264 EDV 266 (604)
Q Consensus 264 ~~~ 266 (604)
+++
T Consensus 228 ~~~ 230 (247)
T TIGR00972 228 EQI 230 (247)
T ss_pred HHH
Confidence 765
No 94
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=3.5e-42 Score=362.37 Aligned_cols=230 Identities=26% Similarity=0.452 Sum_probs=192.7
Q ss_pred hhhheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--
Q 046786 30 EDMLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-- 107 (604)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-- 107 (604)
+.+++..|+++.+....+...+|+||||+|++||+++|+|+||||||||+++|+|++++.. .++|+|.++|+++..
T Consensus 10 ~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~--~~sG~I~~~G~~i~~~~ 87 (330)
T PRK09473 10 DALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANG--RIGGSATFNGREILNLP 87 (330)
T ss_pred CceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC--CCCeEEEECCEECCcCC
Confidence 3457777887776543344579999999999999999999999999999999999986321 148999999998742
Q ss_pred --h---cc-ccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcC
Q 046786 108 --E---VK-RRTGFVAQNN--VFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLS 179 (604)
Q Consensus 108 --~---~~-~~i~yv~Q~~--~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 179 (604)
. .+ +.|+||+|++ .+.|.+|+.+++.+...... ..+.++..+++.++++.+||.+..+. . ++++++||
T Consensus 88 ~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~-~-~~~p~~LS 163 (330)
T PRK09473 88 EKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKR-M-KMYPHEFS 163 (330)
T ss_pred HHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHH-h-cCCcccCC
Confidence 2 22 4799999998 68899999999987654431 23555666788999999999754322 2 36788999
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEE
Q 046786 180 GGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSL 258 (604)
Q Consensus 180 gGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v 258 (604)
|||||||+||++|+.+|++|++||||+|||+.++..+++.|++++++ |.|+|++|||+. .+.+++|++++| ++|+++
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm-~~G~iv 241 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVM-YAGRTM 241 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEE-ECCEEE
Confidence 99999999999999999999999999999999999999999999875 999999999976 677889999999 899999
Q ss_pred EecChhhHH
Q 046786 259 YFGKGEDVI 267 (604)
Q Consensus 259 ~~G~~~~~~ 267 (604)
..|+++++.
T Consensus 242 e~g~~~~i~ 250 (330)
T PRK09473 242 EYGNARDVF 250 (330)
T ss_pred EECCHHHHH
Confidence 999988875
No 95
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-42 Score=350.62 Aligned_cols=229 Identities=26% Similarity=0.401 Sum_probs=195.2
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCC---h-h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS---A-E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~---~-~ 108 (604)
++..|+.+.+....+...+++||||++++||++||+|+|||||||+.++|.|+++.......+|+|.++|+++. + +
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 45567777776655567899999999999999999999999999999999999973222346899999999763 2 2
Q ss_pred ---c-cccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHH
Q 046786 109 ---V-KRRTGFVAQNN--VFYPHLTVAETLVFTALLRLPNSL-KREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGG 181 (604)
Q Consensus 109 ---~-~~~i~yv~Q~~--~l~~~lTv~e~l~f~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 181 (604)
+ .+.|+||||++ .|.|.+||.+.+.-..+... .. .+++..+++.++|+.+||.+... +.+.++.+||||
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~--~~~~YPhelSGG 157 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPER--RLKSYPHELSGG 157 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHH--HHhhCCcccCCc
Confidence 2 24799999996 58999999998887765432 22 46677788999999999986432 335789999999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEe
Q 046786 182 ERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYF 260 (604)
Q Consensus 182 erqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~ 260 (604)
|||||.||.||+.+|++||.||||++||...+.+|+++|+++++ .|.++|++|||.. .+.+++|+|.+| +.|++|..
T Consensus 158 MrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VM-YaG~iVE~ 235 (316)
T COG0444 158 MRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVM-YAGRIVEE 235 (316)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEE-ECcEEEEe
Confidence 99999999999999999999999999999999999999999997 6999999999986 789999999999 99999999
Q ss_pred cChhhHH
Q 046786 261 GKGEDVI 267 (604)
Q Consensus 261 G~~~~~~ 267 (604)
|+++++.
T Consensus 236 g~~~~i~ 242 (316)
T COG0444 236 GPVEEIF 242 (316)
T ss_pred CCHHHHh
Confidence 9998774
No 96
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.5e-42 Score=341.81 Aligned_cols=191 Identities=32% Similarity=0.472 Sum_probs=166.0
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-hccccEEEEecCCC-CCCCC
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-EVKRRTGFVAQNNV-FYPHL 126 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-~~~~~i~yv~Q~~~-l~~~l 126 (604)
+.+|+|+|+++++||+++|+|||||||||||++|+|+.+ |++|+|.++|+++.. ..++.++|++|++. .+..+
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~ 87 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK-----ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTD 87 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEhhhHHhhcceEEEecChhhhhhhc
Confidence 569999999999999999999999999999999999985 579999999998753 44568999999974 23457
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 046786 127 TVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTS 206 (604)
Q Consensus 127 Tv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPts 206 (604)
|++||+.+..... .. ..+++.++++.+||.+..+ +.+++||||||||++||++|+.+|++++|||||+
T Consensus 88 tv~e~l~~~~~~~-----~~--~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 155 (205)
T cd03226 88 SVREELLLGLKEL-----DA--GNEQAETVLKDLDLYALKE-----RHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTS 155 (205)
T ss_pred cHHHHHhhhhhhc-----Cc--cHHHHHHHHHHcCCchhcC-----CCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCc
Confidence 9999998865322 11 1246789999999987766 4466999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEE
Q 046786 207 GLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSL 258 (604)
Q Consensus 207 gLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v 258 (604)
|||+.++..+.+.|++++++|+|||++||++. ++..++|++++| ++|+++
T Consensus 156 ~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l-~~G~iv 205 (205)
T cd03226 156 GLDYKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLL-ANGAIV 205 (205)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEE-ECCEEC
Confidence 99999999999999999878999999999986 577889999999 899874
No 97
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-42 Score=353.57 Aligned_cols=229 Identities=30% Similarity=0.441 Sum_probs=190.1
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+.+.+.. ..+.+|+|+|++|++||+++|+|||||||||||++|+|+.+ |++|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~~--~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~-----p~~G~i~~~g~~i~~~~~~ 77 (279)
T PRK13635 5 IIRVEHISFRYPD--AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL-----PEAGTITVGGMVLSEETVW 77 (279)
T ss_pred eEEEEEEEEEeCC--CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEECCcCcHH
Confidence 3556666555421 23569999999999999999999999999999999999986 579999999998753
Q ss_pred hccccEEEEecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHH
Q 046786 108 EVKRRTGFVAQNNV-FYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRI 186 (604)
Q Consensus 108 ~~~~~i~yv~Q~~~-l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 186 (604)
..++.+||++|++. +++..||.||+.+..... ..+.++..++++++++.+||.+..+ +.++.||||||||+
T Consensus 78 ~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~-----~~~~~LS~G~~qrv 149 (279)
T PRK13635 78 DVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLN-----REPHRLSGGQKQRV 149 (279)
T ss_pred HHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhh-----CCcccCCHHHHHHH
Confidence 34668999999973 666789999999875432 2344555667899999999987766 44569999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhh
Q 046786 187 SIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGED 265 (604)
Q Consensus 187 sia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~ 265 (604)
+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+. .+|++++| ++|++++.|++++
T Consensus 150 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~~-~~d~i~~l-~~G~i~~~g~~~~ 226 (279)
T PRK13635 150 AIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EAA-QADRVIVM-NKGEILEEGTPEE 226 (279)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HHH-cCCEEEEE-ECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999875 899999999986 454 59999999 8999999999887
Q ss_pred HHH---HHHhCCCCCC
Q 046786 266 VIN---YFAGIGYVPS 278 (604)
Q Consensus 266 ~~~---~f~~~g~~~p 278 (604)
+.. .+...+..+|
T Consensus 227 ~~~~~~~~~~~~~~~~ 242 (279)
T PRK13635 227 IFKSGHMLQEIGLDVP 242 (279)
T ss_pred HhcCHHHHHHcCCCCC
Confidence 652 4444555443
No 98
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.8e-42 Score=352.51 Aligned_cols=215 Identities=27% Similarity=0.397 Sum_probs=182.2
Q ss_pred eeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-----h
Q 046786 34 KKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-----E 108 (604)
Q Consensus 34 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-----~ 108 (604)
+..|+.+.+. +++.+|+|+|++|++||+++|+||||||||||||+|+|+.+ |++|+|.++|.++.. .
T Consensus 3 ~~~~l~~~~~---~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~~~~~ 74 (274)
T PRK13644 3 RLENVSYSYP---DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR-----PQKGKVLVSGIDTGDFSKLQG 74 (274)
T ss_pred EEEEEEEEcC---CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEECCccccHHH
Confidence 4445544432 23569999999999999999999999999999999999885 579999999998742 3
Q ss_pred ccccEEEEecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHH
Q 046786 109 VKRRTGFVAQNNV-FYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRIS 187 (604)
Q Consensus 109 ~~~~i~yv~Q~~~-l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvs 187 (604)
.++.+||++|++. .+...|+.||+.+..... ..+.++..++++++++.+||.+..++ .++.||||||||++
T Consensus 75 ~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LS~G~~qrv~ 146 (274)
T PRK13644 75 IRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHR-----SPKTLSGGQGQCVA 146 (274)
T ss_pred HHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcC-----CcccCCHHHHHHHH
Confidence 4578999999975 356689999998865432 23455555678999999999877664 45699999999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 188 IGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 188 ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+ ..+|++++| ++|++++.|+++++.
T Consensus 147 laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l-~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 147 LAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVM-DRGKIVLEGEPENVL 223 (274)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEE-ECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999878999999999986 45 569999999 899999999988764
No 99
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=3.5e-42 Score=344.26 Aligned_cols=198 Identities=32% Similarity=0.481 Sum_probs=167.6
Q ss_pred ceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-------hccccEEEEecCC--
Q 046786 50 MILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-------EVKRRTGFVAQNN-- 120 (604)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-------~~~~~i~yv~Q~~-- 120 (604)
.+|+|+|+++++||+++|+|||||||||||++|+|.++ |++|+|.++|+++.. ..++.++|++|++
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK-----PTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMS 93 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEccccchhhHHHhhccEEEEecCchh
Confidence 69999999999999999999999999999999999985 579999999998742 3456899999998
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHH-HHHHHHHcCCC-ccccccccCccCCCcCHHHHHHHHHHHHHhhCCCe
Q 046786 121 VFYPHLTVAETLVFTALLRLPNSLKREEKVLH-AEAVINQLGLA-RCRNSIIGGRLVRGLSGGERKRISIGQELLINPSL 198 (604)
Q Consensus 121 ~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~i 198 (604)
.+++.+||+||+.+......+ ...++..+. ++++++.+++. +..+ +.+..||||||||++||++|+.+|++
T Consensus 94 ~~~~~~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~LS~G~~qrv~laral~~~p~l 166 (228)
T cd03257 94 SLNPRMTIGEQIAEPLRIHGK--LSKKEARKEAVLLLLVGVGLPEEVLN-----RYPHELSGGQRQRVAIARALALNPKL 166 (228)
T ss_pred hcCCcCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHHHHCCCChhHhh-----CCchhcCHHHHHHHHHHHHHhcCCCE
Confidence 467789999999886543311 112222222 36889999995 4445 45669999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 199 LFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 199 llLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+...+|++++| ++|+++..|
T Consensus 167 llLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l-~~G~i~~~g 228 (228)
T cd03257 167 LIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVM-YAGKIVEEG 228 (228)
T ss_pred EEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEE-eCCEEEecC
Confidence 9999999999999999999999999875 899999999985 577789999999 899998654
No 100
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-42 Score=347.26 Aligned_cols=215 Identities=26% Similarity=0.454 Sum_probs=181.1
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+.+.+ +.+.+|+|+|+++++||+++|+|||||||||||++|+|..+ |++|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~~~~~ 75 (237)
T PRK11614 5 MLSFDKVSAHY----GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR-----ATSGRIVFDGKDITDWQTA 75 (237)
T ss_pred EEEEEeEEEee----CCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCceEEECCEecCCCCHH
Confidence 35555655543 24579999999999999999999999999999999999985 579999999998742
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCccCCCcCHHHHHH
Q 046786 108 -EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQL-GLARCRNSIIGGRLVRGLSGGERKR 185 (604)
Q Consensus 108 -~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~~~~~~LSgGerqR 185 (604)
..++.++|++|+..+++.+||.||+.+..... ..++..+.++++++.+ ++.+..+ +.++.||||||||
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~-----~~~~~LS~G~~qr 145 (237)
T PRK11614 76 KIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRI-----QRAGTMSGGEQQM 145 (237)
T ss_pred HHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHh-----CchhhCCHHHHHH
Confidence 24567999999999999999999998864221 1222334567778887 4765555 3466999999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhh
Q 046786 186 ISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGED 265 (604)
Q Consensus 186 vsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~ 265 (604)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++| ++|++++.|++++
T Consensus 146 l~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l-~~G~i~~~~~~~~ 223 (237)
T PRK11614 146 LAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVL-ENGHVVLEDTGDA 223 (237)
T ss_pred HHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEE-eCCEEEeeCCHHH
Confidence 99999999999999999999999999999999999999888999999999975 678899999999 8999999999887
Q ss_pred HH
Q 046786 266 VI 267 (604)
Q Consensus 266 ~~ 267 (604)
+.
T Consensus 224 ~~ 225 (237)
T PRK11614 224 LL 225 (237)
T ss_pred Hh
Confidence 63
No 101
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-42 Score=369.47 Aligned_cols=205 Identities=28% Similarity=0.476 Sum_probs=181.0
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h----ccccEEEEecC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E----VKRRTGFVAQN 119 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~----~~~~i~yv~Q~ 119 (604)
...+|+|+|+++++||+++|+||||||||||||+|+|+++ |++|+|.++|+++.. . .++.+|||+|+
T Consensus 40 ~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~-----p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~ 114 (400)
T PRK10070 40 LSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE-----PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQS 114 (400)
T ss_pred CeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC-----CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECC
Confidence 3458999999999999999999999999999999999985 679999999998742 1 13579999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeE
Q 046786 120 NVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLL 199 (604)
Q Consensus 120 ~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~il 199 (604)
..+++++||+||+.+....+ ..+.++..+++.++++.+||.+..+ +.++.|||||||||+|||+|+.+|++|
T Consensus 115 ~~l~~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~~-----~~~~~LSgGq~QRv~LArAL~~~P~iL 186 (400)
T PRK10070 115 FALMPHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAH-----SYPDELSGGMRQRVGLARALAINPDIL 186 (400)
T ss_pred CcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhhh-----cCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999986543 2344555567899999999987766 456799999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 200 FLDEPTSGLDSTMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 200 lLDEPtsgLD~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
||||||+|||+.++..+.+.|+++++ .|+|||++||++. ++..++|++++| ++|+++..|+++++.
T Consensus 187 LLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL-~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 187 LMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIM-QNGEVVQVGTPDEIL 253 (400)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEE-ECCEEEecCCHHHHH
Confidence 99999999999999999999999976 5899999999975 678899999999 899999999988764
No 102
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-42 Score=354.20 Aligned_cols=229 Identities=25% Similarity=0.437 Sum_probs=190.0
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCC-----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS----- 106 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~----- 106 (604)
+++..|+++.+. .++.+|+|+|+++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 5 ~l~~~~l~~~~~---~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~-----p~~G~i~i~g~~~~~~~~~ 76 (283)
T PRK13636 5 ILKVEELNYNYS---DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK-----PSSGRILFDGKPIDYSRKG 76 (283)
T ss_pred eEEEEeEEEEeC---CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCccEEEECCEECCCCcch
Confidence 456666666542 23569999999999999999999999999999999999985 57999999999873
Q ss_pred -hhccccEEEEecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHH
Q 046786 107 -AEVKRRTGFVAQNNV-FYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERK 184 (604)
Q Consensus 107 -~~~~~~i~yv~Q~~~-l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 184 (604)
...++.+||++|++. .+...||+||+.+..... ..+.++..++++++++.+||.+..+ +.++.|||||||
T Consensus 77 ~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~-----~~~~~LS~G~~q 148 (283)
T PRK13636 77 LMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKD-----KPTHCLSFGQKK 148 (283)
T ss_pred HHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhh-----CCcccCCHHHHH
Confidence 135678999999973 234579999998865432 2345555567899999999987666 456799999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecCh
Q 046786 185 RISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKG 263 (604)
Q Consensus 185 Rvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~ 263 (604)
|++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+...+|++++| ++|++++.|++
T Consensus 149 rl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l-~~G~i~~~g~~ 226 (283)
T PRK13636 149 RVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVM-KEGRVILQGNP 226 (283)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEE-ECCEEEEeCCH
Confidence 999999999999999999999999999999999999999875 999999999976 567789999999 89999999999
Q ss_pred hhHHH---HHHhCCCCCC
Q 046786 264 EDVIN---YFAGIGYVPS 278 (604)
Q Consensus 264 ~~~~~---~f~~~g~~~p 278 (604)
+++.. .+...+..+|
T Consensus 227 ~~~~~~~~~~~~~~~~~~ 244 (283)
T PRK13636 227 KEVFAEKEMLRKVNLRLP 244 (283)
T ss_pred HHHhcCHHHHHHcCCCCC
Confidence 88753 3334455443
No 103
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=4.5e-42 Score=342.48 Aligned_cols=208 Identities=25% Similarity=0.420 Sum_probs=176.6
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-----
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----- 107 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----- 107 (604)
++..|+.+.+. +++.+|+|+|+++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 2 l~~~~l~~~~~---~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~i~~~~~~~ 73 (222)
T PRK10908 2 IRFEHVSKAYL---GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER-----PSAGKIWFSGHDITRLKNRE 73 (222)
T ss_pred EEEEeeEEEec---CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEcccCChhH
Confidence 34455554432 23569999999999999999999999999999999999985 579999999998742
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHH
Q 046786 108 --EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKR 185 (604)
Q Consensus 108 --~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 185 (604)
..++.++|++|++.+++.+|++||+.+....+ ....++..++++++++.+|+.+..+ +.++.||||||||
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qr 145 (222)
T PRK10908 74 VPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAK-----NFPIQLSGGEQQR 145 (222)
T ss_pred HHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhh-----CCchhCCHHHHHH
Confidence 14578999999998888999999999875432 2334444556889999999987665 4466999999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEE
Q 046786 186 ISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSL 258 (604)
Q Consensus 186 vsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v 258 (604)
++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|++. .+...+|++++| ++|+++
T Consensus 146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l-~~G~i~ 216 (222)
T PRK10908 146 VGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTL-SDGHLH 216 (222)
T ss_pred HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEE-ECCEEc
Confidence 99999999999999999999999999999999999999877899999999986 577889999999 899975
No 104
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.4e-42 Score=352.45 Aligned_cols=219 Identities=25% Similarity=0.394 Sum_probs=181.5
Q ss_pred heeeeEEEEEeccc-cccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 33 LKKVNMLVIIKNSD-EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 33 ~~~~~~~~~~~~~~-~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
++..|+.+.+.... ..+.+|+|+|+++++||+++|+|||||||||||++|+|+++ |++|+|.++|+++..
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~i~~~~~~ 77 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV-----PTQGSVRVDDTLITSTSKN 77 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEccccccc
Confidence 34455555543211 12469999999999999999999999999999999999985 579999999998642
Q ss_pred ----hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCcCH
Q 046786 108 ----EVKRRTGFVAQNN--VFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLAR-CRNSIIGGRLVRGLSG 180 (604)
Q Consensus 108 ----~~~~~i~yv~Q~~--~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSg 180 (604)
..++.++|++|++ .+++ .||+||+.+..... ..+.++..++++++++.+||.+ ..+ +.++.|||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~LSg 148 (280)
T PRK13649 78 KDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFE-----KNPFELSG 148 (280)
T ss_pred cCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhh-----CCcccCCH
Confidence 3456799999996 4555 69999998865432 1234444567889999999973 444 45669999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEe
Q 046786 181 GERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYF 260 (604)
Q Consensus 181 GerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~ 260 (604)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+..++|++++| ++|+++..
T Consensus 149 G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l-~~G~i~~~ 226 (280)
T PRK13649 149 GQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVL-EKGKLVLS 226 (280)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEE-ECCEEEEe
Confidence 9999999999999999999999999999999999999999999877999999999975 677889999999 89999999
Q ss_pred cChhhHH
Q 046786 261 GKGEDVI 267 (604)
Q Consensus 261 G~~~~~~ 267 (604)
|+++++.
T Consensus 227 g~~~~~~ 233 (280)
T PRK13649 227 GKPKDIF 233 (280)
T ss_pred CCHHHHh
Confidence 9988763
No 105
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-42 Score=345.98 Aligned_cols=215 Identities=27% Similarity=0.476 Sum_probs=181.4
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCC------
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS------ 106 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~------ 106 (604)
++..|+.+.+ +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ |++|+|.++|+++.
T Consensus 3 l~~~~l~~~~----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~~~ 73 (242)
T PRK11124 3 IQLNGINCFY----GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM-----PRSGTLNIAGNHFDFSKTPS 73 (242)
T ss_pred EEEEeeEEEE----CCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEecccccccc
Confidence 3444554443 23569999999999999999999999999999999999985 57999999999762
Q ss_pred ----hhccccEEEEecCCCCCCCCCHHHHHHHHH-HhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHH
Q 046786 107 ----AEVKRRTGFVAQNNVFYPHLTVAETLVFTA-LLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGG 181 (604)
Q Consensus 107 ----~~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 181 (604)
...++.++|++|++.+++.+||.||+.+.. ... .....+..+++.++++.+|+.+..+ +.++.||||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LS~G 145 (242)
T PRK11124 74 DKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYAD-----RFPLHLSGG 145 (242)
T ss_pred hhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhh-----CChhhCCHH
Confidence 124567999999999999999999997532 221 1233444567899999999987666 445699999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 182 ERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 182 erqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.+|++++| .+|++++.|
T Consensus 146 ~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l-~~g~i~~~~ 223 (242)
T PRK11124 146 QQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYM-ENGHIVEQG 223 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEE-ECCEEEEeC
Confidence 999999999999999999999999999999999999999999877999999999986 567889999999 899999999
Q ss_pred ChhhH
Q 046786 262 KGEDV 266 (604)
Q Consensus 262 ~~~~~ 266 (604)
++++.
T Consensus 224 ~~~~~ 228 (242)
T PRK11124 224 DASCF 228 (242)
T ss_pred CHHHh
Confidence 87653
No 106
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-42 Score=335.07 Aligned_cols=216 Identities=30% Similarity=0.503 Sum_probs=183.0
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+.. .+++.++|++||+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|++++.
T Consensus 3 mL~v~~l~~----~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~-----~~~G~I~~~G~dit~~p~~ 73 (237)
T COG0410 3 MLEVENLSA----GYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR-----PRSGRIIFDGEDITGLPPH 73 (237)
T ss_pred ceeEEeEee----cccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeeEEECCeecCCCCHH
Confidence 455555443 3456789999999999999999999999999999999999986 458999999999863
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCccCCCcCHHHHHH
Q 046786 108 -EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLG-LARCRNSIIGGRLVRGLSGGERKR 185 (604)
Q Consensus 108 -~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~~LSgGerqR 185 (604)
..++.++||||...+||.|||+|||..++..+.. ++.....++++.+.+- |.+.++.+ ...|||||||.
T Consensus 74 ~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~-----aG~LSGGEQQM 144 (237)
T COG0410 74 ERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQR-----AGTLSGGEQQM 144 (237)
T ss_pred HHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCc-----ccCCChHHHHH
Confidence 4577899999999999999999999988654321 1112222677888774 55556644 45999999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChh
Q 046786 186 ISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGE 264 (604)
Q Consensus 186 vsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~ 264 (604)
++|||||+++|++|+|||||.||-|.-..+|.+.|++++++ |.||+++.++.. ...+++|+..+| .+|++++.|+++
T Consensus 145 LAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvl-e~Griv~~G~~~ 222 (237)
T COG0410 145 LAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVL-ENGRIVLSGTAA 222 (237)
T ss_pred HHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEE-eCCEEEEecCHH
Confidence 99999999999999999999999999999999999999975 789999999865 678899999999 899999999998
Q ss_pred hHH
Q 046786 265 DVI 267 (604)
Q Consensus 265 ~~~ 267 (604)
++.
T Consensus 223 eL~ 225 (237)
T COG0410 223 ELL 225 (237)
T ss_pred HHh
Confidence 775
No 107
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-42 Score=346.33 Aligned_cols=226 Identities=23% Similarity=0.344 Sum_probs=183.9
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~ 108 (604)
++..|+.+.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++....|++|+|.++|+++.. .
T Consensus 4 l~~~~l~~~~----~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 4 IEIRDLKVSF----GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred EEEEeeEEEE----CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4555555443 2356999999999999999999999999999999999998531001469999999998742 4
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISI 188 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsi 188 (604)
.++.+||++|++.+++.+||+||+.+....+.. ....++..+.+.++++.+||.+..+.. -++.+.+||||||||++|
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgG~~qrv~l 157 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDR-LDAPAGKLSGGQQQRLCI 157 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhh-hcCCcccCCHHHHHHHHH
Confidence 567899999999888899999999987543211 113344456788999999986421111 125567999999999999
Q ss_pred HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 189 GQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 189 a~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
|++|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||+++|++. .+.+.+|++++| ++|+++..|+++++.
T Consensus 158 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l-~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 158 ARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFL-YKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEE-ECCeEEEECCHHHHH
Confidence 9999999999999999999999999999999999965 899999999986 577889999999 899999999987763
No 108
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.6e-42 Score=351.16 Aligned_cols=216 Identities=21% Similarity=0.418 Sum_probs=181.6
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-----
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----- 107 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----- 107 (604)
++..|+++.+ +++.+|+|+|+++++||+++|+||||||||||||+|+|+++ |++|+|.++|+++..
T Consensus 2 l~~~~l~~~~----~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~~~~~~ 72 (271)
T PRK13638 2 LATSDLWFRY----QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR-----PQKGAVLWQGKPLDYSKRGL 72 (271)
T ss_pred eEEEEEEEEc----CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCccEEEECCEEcccccCCH
Confidence 4455655543 23569999999999999999999999999999999999985 579999999998731
Q ss_pred -hccccEEEEecCCCC-CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHH
Q 046786 108 -EVKRRTGFVAQNNVF-YPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKR 185 (604)
Q Consensus 108 -~~~~~i~yv~Q~~~l-~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 185 (604)
..++.++||+|++.. +...|+.||+.+..... ....++..++++++++.+||.+..++ .++.||||||||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qr 144 (271)
T PRK13638 73 LALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQ-----PIQCLSHGQKKR 144 (271)
T ss_pred HHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcC-----CchhCCHHHHHH
Confidence 345679999999753 34468999998865432 22344445678899999999876664 456999999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhh
Q 046786 186 ISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGED 265 (604)
Q Consensus 186 vsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~ 265 (604)
++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+..++|++++| ++|++++.|++++
T Consensus 145 l~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l-~~G~i~~~g~~~~ 222 (271)
T PRK13638 145 VAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVL-RQGQILTHGAPGE 222 (271)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEE-ECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999877999999999975 577889999999 8999999999887
Q ss_pred HH
Q 046786 266 VI 267 (604)
Q Consensus 266 ~~ 267 (604)
+.
T Consensus 223 ~~ 224 (271)
T PRK13638 223 VF 224 (271)
T ss_pred Hh
Confidence 64
No 109
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.1e-42 Score=348.28 Aligned_cols=212 Identities=31% Similarity=0.509 Sum_probs=180.0
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhcccc
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRR 112 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 112 (604)
++..|+++.+ +++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ |++|+|.++|+++.. .++.
T Consensus 2 l~~~~l~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~-~~~~ 71 (255)
T PRK11248 2 LQISHLYADY----GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP-----YQHGSITLDGKPVEG-PGAE 71 (255)
T ss_pred EEEEEEEEEe----CCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCC-CCCc
Confidence 3445555443 23569999999999999999999999999999999999985 579999999998753 2346
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHH
Q 046786 113 TGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQEL 192 (604)
Q Consensus 113 i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L 192 (604)
++|++|++.+++.+||+||+.+....+ .....+..+++.++++.+||.+..+ +.+..||||||||++||++|
T Consensus 72 ~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LSgGq~qrl~laral 143 (255)
T PRK11248 72 RGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEK-----RYIWQLSGGQRQRVGIARAL 143 (255)
T ss_pred EEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhh-----CChhhCCHHHHHHHHHHHHH
Confidence 899999999999999999998865432 2334444567899999999987666 44669999999999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEec--CCeEEEecChh
Q 046786 193 LINPSLLFLDEPTSGLDSTMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSS--DGSSLYFGKGE 264 (604)
Q Consensus 193 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~--~G~~v~~G~~~ 264 (604)
+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||++. .+...+|++++| + +|+++..++.+
T Consensus 144 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l-~~~~G~i~~~~~~~ 216 (255)
T PRK11248 144 AANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLL-SPGPGRVVERLPLN 216 (255)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE-eCCCcEEEEEecCC
Confidence 999999999999999999999999999999965 5899999999986 678899999999 6 59999887654
No 110
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-41 Score=346.69 Aligned_cols=227 Identities=27% Similarity=0.420 Sum_probs=183.9
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCC--h--
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS--A-- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~--~-- 107 (604)
+++..|+.+.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|++++....+++|+|.++|+++. .
T Consensus 4 ~l~~~~l~~~~----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 79 (253)
T PRK14267 4 AIETVNLRVYY----GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVD 79 (253)
T ss_pred eEEEEeEEEEe----CCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccC
Confidence 35555665544 235699999999999999999999999999999999999863211135999999999874 1
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHH
Q 046786 108 --EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKR 185 (604)
Q Consensus 108 --~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 185 (604)
.+++.++|++|++.+++.+||.||+.+....+. .....++..++++++++.+|+....... -++.++.||||||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G~~qr 157 (253)
T PRK14267 80 PIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNG-LVKSKKELDERVEWALKKAALWDEVKDR-LNDYPSNLSGGQRQR 157 (253)
T ss_pred hHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcC-ccCCHHHHHHHHHHHHHHcCCccchhhh-hccChhhCCHHHHHH
Confidence 345689999999999999999999998754321 1112344445688899999985321111 125577999999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhh
Q 046786 186 ISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGED 265 (604)
Q Consensus 186 vsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~ 265 (604)
++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+..++|++++| ++|+++..|++++
T Consensus 158 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l-~~G~i~~~~~~~~ 234 (253)
T PRK14267 158 LVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFL-YLGKLIEVGPTRK 234 (253)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEE-ECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999975 699999999975 577889999999 8999999999876
Q ss_pred HH
Q 046786 266 VI 267 (604)
Q Consensus 266 ~~ 267 (604)
+.
T Consensus 235 ~~ 236 (253)
T PRK14267 235 VF 236 (253)
T ss_pred HH
Confidence 63
No 111
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=4.4e-42 Score=366.03 Aligned_cols=207 Identities=24% Similarity=0.433 Sum_probs=182.4
Q ss_pred ccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCE----eCC---h-h---c-cccE
Q 046786 46 DEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGK----QFS---A-E---V-KRRT 113 (604)
Q Consensus 46 ~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~----~~~---~-~---~-~~~i 113 (604)
++...+|+|+||++++||+++|+||||||||||+|+|+|+++ |++|+|+++|+ ++. . . . ++.+
T Consensus 34 ~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~-----p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i 108 (382)
T TIGR03415 34 TGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP-----VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRV 108 (382)
T ss_pred hCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEECCEecccccccCCHHHHHHHhcCCE
Confidence 455679999999999999999999999999999999999985 67999999997 332 1 1 2 2579
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHh
Q 046786 114 GFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELL 193 (604)
Q Consensus 114 ~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~ 193 (604)
+||+|+..++|.+||+||+.++...+ ..++++.+++++++++.+||.+..| +.+.+|||||||||+|||+|+
T Consensus 109 ~~vfQ~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~-----~~~~~LSgGq~QRV~LARALa 180 (382)
T TIGR03415 109 SMVFQKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWAD-----KKPGELSGGMQQRVGLARAFA 180 (382)
T ss_pred EEEECCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhc-----CChhhCCHHHHHHHHHHHHHh
Confidence 99999999999999999999986543 2345566678899999999988776 445699999999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 194 INPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 194 ~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
++|++|+|||||+|||+.++.++.+.|++++++ |+|||++||++. ++.+++|++++| ++|+++..|+++++.
T Consensus 181 ~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl-~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 181 MDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIM-EGGRIIQHGTPEEIV 253 (382)
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE-ECCEEEEecCHHHHh
Confidence 999999999999999999999999999999875 999999999976 678999999999 899999999998774
No 112
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.1e-42 Score=359.74 Aligned_cols=231 Identities=22% Similarity=0.293 Sum_probs=186.9
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+++.+....+.+.+|+|||++|++||+++|+|+||||||||+++|+|++++. ..+++|+|.++|+++..
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~-~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDN-WRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCC-CCCcceEEEECCEECCcCCHH
Confidence 3566677666644334467999999999999999999999999999999999998531 12579999999998742
Q ss_pred hc----cccEEEEecCCC--CCCCCCHHHHHHHHHHhcCCCC---CCHHHHHHHHHHHHHHcCCCccccccccCccCCCc
Q 046786 108 EV----KRRTGFVAQNNV--FYPHLTVAETLVFTALLRLPNS---LKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGL 178 (604)
Q Consensus 108 ~~----~~~i~yv~Q~~~--l~~~lTv~e~l~f~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 178 (604)
.. ++.++||+|++. +.|.+||.+++.+......... ....+..+++.++++.+||.+..+ ..++.+.+|
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--~~~~~p~~L 159 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--AMRSFPYEL 159 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH--HHhCCchhC
Confidence 11 347999999975 6788999999986432211000 112344567899999999975322 123567899
Q ss_pred CHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeE
Q 046786 179 SGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSS 257 (604)
Q Consensus 179 SgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~ 257 (604)
||||||||+||+||+.+|++|+|||||+|||+.++.++++.|++++++ |.|||++|||+. .+.+++|++++| ++|++
T Consensus 160 SgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~vm-~~G~i 237 (330)
T PRK15093 160 TEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKINVL-YCGQT 237 (330)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEE-ECCEE
Confidence 999999999999999999999999999999999999999999999874 999999999975 677899999999 89999
Q ss_pred EEecChhhHH
Q 046786 258 LYFGKGEDVI 267 (604)
Q Consensus 258 v~~G~~~~~~ 267 (604)
+..|+++++.
T Consensus 238 ve~g~~~~i~ 247 (330)
T PRK15093 238 VETAPSKELV 247 (330)
T ss_pred EEECCHHHHH
Confidence 9999987764
No 113
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.8e-42 Score=339.61 Aligned_cols=197 Identities=32% Similarity=0.564 Sum_probs=172.1
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh---hccccEEEEecCCCCCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---EVKRRTGFVAQNNVFYP 124 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---~~~~~i~yv~Q~~~l~~ 124 (604)
++.+|+|+|+++++| +++|+|||||||||||++|+|+++ |++|+|.++|+++.. ..++.++|++|++.+++
T Consensus 12 ~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~ 85 (211)
T cd03264 12 KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP-----PSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYP 85 (211)
T ss_pred CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCCccccchHHHHhheEEecCCCcccc
Confidence 346999999999999 999999999999999999999985 579999999987643 34678999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 046786 125 HLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEP 204 (604)
Q Consensus 125 ~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEP 204 (604)
.+||+||+.+....+ ...+++..+.++++++.+||.+..++ .+..||||||||++||++|+.+|++++||||
T Consensus 86 ~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~llllDEP 157 (211)
T cd03264 86 NFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKK-----KIGSLSGGMRRRVGIAQALVGDPSILIVDEP 157 (211)
T ss_pred cCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhC-----chhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999999999876543 12333445678899999999877664 4569999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 205 TSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 205 tsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
|+|||+.++..+.+.|+++++ ++|||+++|++. .+.+++|++++| ++|+++..|
T Consensus 158 t~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l-~~g~i~~~g 211 (211)
T cd03264 158 TAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVL-NKGKLVFEG 211 (211)
T ss_pred cccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEE-ECCEEEecC
Confidence 999999999999999999986 599999999985 577889999999 899998765
No 114
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9e-42 Score=352.22 Aligned_cols=231 Identities=25% Similarity=0.409 Sum_probs=189.5
Q ss_pred hheeeeEEEEEeccc--cccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--
Q 046786 32 MLKKVNMLVIIKNSD--EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~--~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-- 107 (604)
+++..|+++.+.... ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~i~g~~i~~~~ 78 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI-----PSEGKVYVDGLDTSDEE 78 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEeccccc
Confidence 466667666654221 13569999999999999999999999999999999999985 579999999998742
Q ss_pred ---hccccEEEEecCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHH
Q 046786 108 ---EVKRRTGFVAQNNV--FYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGE 182 (604)
Q Consensus 108 ---~~~~~i~yv~Q~~~--l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 182 (604)
..++.+||++|++. ++ ..||.|++.|..... ..++.+..++++++++.+||.+..++ .++.|||||
T Consensus 79 ~~~~~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~~~LS~G~ 149 (280)
T PRK13633 79 NLWDIRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRH-----APHLLSGGQ 149 (280)
T ss_pred cHHHHhhheEEEecChhhhhc-cccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhC-----CcccCCHHH
Confidence 34678999999974 44 469999999875432 23445556678999999999887764 456999999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 183 RKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 183 rqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
|||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||+++|++.. +.. +|++++| ++|+++..|
T Consensus 150 ~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~~~-~d~v~~l-~~G~i~~~g 226 (280)
T PRK13633 150 KQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-AVE-ADRIIVM-DSGKVVMEG 226 (280)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-Hhc-CCEEEEE-ECCEEEEec
Confidence 9999999999999999999999999999999999999999986 49999999999874 544 9999999 899999999
Q ss_pred ChhhHHH---HHHhCCCCCCC
Q 046786 262 KGEDVIN---YFAGIGYVPSV 279 (604)
Q Consensus 262 ~~~~~~~---~f~~~g~~~p~ 279 (604)
+++++.. .+...+...|.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~ 247 (280)
T PRK13633 227 TPKEIFKEVEMMKKIGLDVPQ 247 (280)
T ss_pred CHHHHhcChHHHHhcCCCCCc
Confidence 9988743 23344554433
No 115
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-42 Score=348.12 Aligned_cols=219 Identities=23% Similarity=0.415 Sum_probs=183.2
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+.+.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |++|+|.++|.++..
T Consensus 5 ~l~~~~l~~~~----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~~~ 75 (255)
T PRK11300 5 LLSVSGLMMRF----GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK-----PTGGTILLRGQHIEGLPGH 75 (255)
T ss_pred eEEEeeEEEEE----CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC-----CCcceEEECCEECCCCCHH
Confidence 45566665543 34579999999999999999999999999999999999985 579999999998742
Q ss_pred h-ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCC----------CCC--CHHHHHHHHHHHHHHcCCCccccccccCcc
Q 046786 108 E-VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLP----------NSL--KREEKVLHAEAVINQLGLARCRNSIIGGRL 174 (604)
Q Consensus 108 ~-~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~----------~~~--~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 174 (604)
. .+..++|++|++.+++.+||+||+.++...... ... ...+..++++++++.+||.+..+ +.
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----~~ 150 (255)
T PRK11300 76 QIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHAN-----RQ 150 (255)
T ss_pred HHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhh-----CC
Confidence 2 234699999999999999999999986432110 000 11233456788999999987666 44
Q ss_pred CCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEec
Q 046786 175 VRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSS 253 (604)
Q Consensus 175 ~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~ 253 (604)
++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.+.+|++++| +
T Consensus 151 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l-~ 228 (255)
T PRK11300 151 AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDRIYVV-N 228 (255)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCEEEEE-E
Confidence 6699999999999999999999999999999999999999999999999875 899999999975 677899999999 8
Q ss_pred CCeEEEecChhhH
Q 046786 254 DGSSLYFGKGEDV 266 (604)
Q Consensus 254 ~G~~v~~G~~~~~ 266 (604)
+|++++.|+++++
T Consensus 229 ~g~i~~~~~~~~~ 241 (255)
T PRK11300 229 QGTPLANGTPEEI 241 (255)
T ss_pred CCeEEecCCHHHH
Confidence 9999999998765
No 116
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3.8e-42 Score=340.24 Aligned_cols=193 Identities=35% Similarity=0.570 Sum_probs=167.0
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----hccccEEEEecCCC-CC
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----EVKRRTGFVAQNNV-FY 123 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~-l~ 123 (604)
+.+|+|+|+++++||+++|+||||||||||||+|+|+++ |++|+|.++|+++.. ..++.++|++|++. .+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~ 88 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG-----PTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQF 88 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEEcccCCHHHHHhhceEEecChhhhc
Confidence 569999999999999999999999999999999999985 579999999998742 34578999999974 36
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeC
Q 046786 124 PHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDE 203 (604)
Q Consensus 124 ~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDE 203 (604)
+.+|++||+.+..... .....+..++++++++.+||.+..+ +.++.||||||||++||++|+.+|++++|||
T Consensus 89 ~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrv~laral~~~p~llllDE 160 (211)
T cd03225 89 FGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRD-----RSPFTLSGGQKQRVAIAGVLAMDPDILLLDE 160 (211)
T ss_pred CCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhc-----CCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 6789999998865432 1233444557889999999987665 4466999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCe
Q 046786 204 PTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGS 256 (604)
Q Consensus 204 PtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~ 256 (604)
||+|||+.++..+.+.|++++++|+|||++||++. .+..++|++++| ++|+
T Consensus 161 Pt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l-~~G~ 211 (211)
T cd03225 161 PTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVL-EDGK 211 (211)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-eCCC
Confidence 99999999999999999999877999999999975 677889999999 7774
No 117
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1e-41 Score=346.41 Aligned_cols=205 Identities=27% Similarity=0.482 Sum_probs=178.1
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-----------------hcc
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-----------------EVK 110 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-----------------~~~ 110 (604)
++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ |++|+|.++|+++.. ..+
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~ 86 (252)
T TIGR03005 12 ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP-----IDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMR 86 (252)
T ss_pred CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEccccccccccccccchhHHHHHh
Confidence 3569999999999999999999999999999999999985 579999999987631 246
Q ss_pred ccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHH
Q 046786 111 RRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQ 190 (604)
Q Consensus 111 ~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~ 190 (604)
+.++|++|++.+++.+|+.||+.++.... .....++..+.+.++++.+|+.+..+ +.++.||||||||++||+
T Consensus 87 ~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LS~G~~qrv~lar 159 (252)
T TIGR03005 87 NKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKAD-----HMPAQLSGGQQQRVAIAR 159 (252)
T ss_pred hCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhh-----cChhhcCHHHHHHHHHHH
Confidence 68999999999999999999998864321 12234444567889999999987666 456799999999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhH
Q 046786 191 ELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266 (604)
Q Consensus 191 ~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~ 266 (604)
+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. .+..++|++++| ++|++++.|+++++
T Consensus 160 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l-~~G~i~~~g~~~~~ 234 (252)
T TIGR03005 160 ALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVCFF-DKGRIVEQGKPDEI 234 (252)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEE-ECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999875 899999999986 577889999999 89999999987765
No 118
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=8.8e-42 Score=349.56 Aligned_cols=221 Identities=26% Similarity=0.421 Sum_probs=183.1
Q ss_pred heeeeEEEEEecc-----ccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh
Q 046786 33 LKKVNMLVIIKNS-----DEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA 107 (604)
Q Consensus 33 ~~~~~~~~~~~~~-----~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~ 107 (604)
++..|+.+.+... .+++.+|+|+|+++++||+++|+|||||||||||++|+|+++ |++|+|.++|+++..
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~ 77 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK-----PAQGTVSFRGQDLYQ 77 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEEccc
Confidence 4455655554321 124679999999999999999999999999999999999985 579999999998742
Q ss_pred -------hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCC
Q 046786 108 -------EVKRRTGFVAQNN--VFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLA-RCRNSIIGGRLVRG 177 (604)
Q Consensus 108 -------~~~~~i~yv~Q~~--~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~ 177 (604)
..++.++|++|++ .+++.+||+||+.+..... ......+..+++.++++.+||. +..+ +.+++
T Consensus 78 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~~ 150 (265)
T TIGR02769 78 LDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDAD-----KLPRQ 150 (265)
T ss_pred cCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhh-----CChhh
Confidence 1356799999996 4677899999998764321 1123334456788999999996 5555 45669
Q ss_pred cCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCe
Q 046786 178 LSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGS 256 (604)
Q Consensus 178 LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~ 256 (604)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+..++|++++| ++|+
T Consensus 151 LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l-~~G~ 228 (265)
T TIGR02769 151 LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVM-DKGQ 228 (265)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEE-eCCE
Confidence 9999999999999999999999999999999999999999999999875 899999999975 577889999999 8999
Q ss_pred EEEecChhhHH
Q 046786 257 SLYFGKGEDVI 267 (604)
Q Consensus 257 ~v~~G~~~~~~ 267 (604)
+++.|+++++.
T Consensus 229 i~~~g~~~~~~ 239 (265)
T TIGR02769 229 IVEECDVAQLL 239 (265)
T ss_pred EEEECCHHHHc
Confidence 99999987764
No 119
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.6e-43 Score=348.34 Aligned_cols=205 Identities=26% Similarity=0.451 Sum_probs=189.2
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-------hc-cccEEEEecCC
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-------EV-KRRTGFVAQNN 120 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-------~~-~~~i~yv~Q~~ 120 (604)
..-++|+|++++.||+..|||-||||||||+++|.++.+ |++|+|+++|+++.. ++ ++++++|||..
T Consensus 41 vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie-----pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~F 115 (386)
T COG4175 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE-----PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSF 115 (386)
T ss_pred EEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC-----CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhh
Confidence 346899999999999999999999999999999999985 789999999999842 23 46799999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEE
Q 046786 121 VFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLF 200 (604)
Q Consensus 121 ~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~ill 200 (604)
.|+|+.||.||..|+...+ +.+++++++++.+.|+.+||....+ +++.+|||||||||.+||||+++|+||+
T Consensus 116 aLlPhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~-----~yp~eLSGGMqQRVGLARAla~~~~IlL 187 (386)
T COG4175 116 ALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYAD-----KYPNELSGGMQQRVGLARALANDPDILL 187 (386)
T ss_pred ccccchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhh-----cCcccccchHHHHHHHHHHHccCCCEEE
Confidence 9999999999999998775 6789999999999999999999888 5677999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHHH
Q 046786 201 LDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVIN 268 (604)
Q Consensus 201 LDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~~ 268 (604)
+|||+|+|||--+.++.+.|.+|.++ ++|||++|||.. +.+++.|||.+| ++|+++..|+|++++.
T Consensus 188 MDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaim-kdG~ivQ~Gtp~eIl~ 254 (386)
T COG4175 188 MDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIM-KDGEIVQVGTPEEILL 254 (386)
T ss_pred ecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEe-cCCeEEEeCCHHHHHc
Confidence 99999999999999999999999764 899999999975 788999999999 9999999999999874
No 120
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.2e-39 Score=398.22 Aligned_cols=222 Identities=31% Similarity=0.456 Sum_probs=193.2
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh---h
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---E 108 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---~ 108 (604)
.++..|+...+.. +++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ |++|+|.++|+++.. .
T Consensus 928 ~L~I~nLsK~y~~--~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~-----PtsG~I~i~G~dI~~~~~~ 1000 (2272)
T TIGR01257 928 GVCVKNLVKIFEP--SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP-----PTSGTVLVGGKDIETNLDA 1000 (2272)
T ss_pred eEEEEeEEEEecC--CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC-----CCceEEEECCEECcchHHH
Confidence 4555666554421 24679999999999999999999999999999999999985 679999999999853 3
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISI 188 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsi 188 (604)
.++.+||++|++.+++.+||+|++.|.++++ ..+.++.+++++++++.+||.+.+| +.+++|||||||||+|
T Consensus 1001 ~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lk---g~~~~~~~~~v~~lL~~vgL~~~~~-----~~~~~LSGGqKQRLsL 1072 (2272)
T TIGR01257 1001 VRQSLGMCPQHNILFHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRN-----EEAQDLSGGMQRKLSV 1072 (2272)
T ss_pred HhhcEEEEecCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhc-----CChhhCCHHHHHHHHH
Confidence 5678999999999999999999999987664 2334455567899999999998777 4456999999999999
Q ss_pred HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHHH
Q 046786 189 GQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVIN 268 (604)
Q Consensus 189 a~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~~ 268 (604)
|+||+.+|++++|||||+|||+.++..+.+.|++++ +|+|||++||++. ++..++|++++| ++|+++..|+++.+.+
T Consensus 1073 ArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL-~~GkL~~~Gs~~~Lk~ 1149 (2272)
T TIGR01257 1073 AIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAII-SQGRLYCSGTPLFLKN 1149 (2272)
T ss_pred HHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEE-ECCEEEEecCHHHHHH
Confidence 999999999999999999999999999999999995 5999999999975 678899999999 8999999999999987
Q ss_pred HHH
Q 046786 269 YFA 271 (604)
Q Consensus 269 ~f~ 271 (604)
.|.
T Consensus 1150 ~~g 1152 (2272)
T TIGR01257 1150 CFG 1152 (2272)
T ss_pred hcC
Confidence 663
No 121
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=7.7e-42 Score=348.65 Aligned_cols=216 Identities=33% Similarity=0.490 Sum_probs=181.9
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~ 108 (604)
++..|+.+.+ +++.+|+|+|+++++|++++|+|||||||||||++|+|+.+ |++|+|.++|.++.. .
T Consensus 3 l~~~~l~~~~----~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----p~~G~i~~~g~~~~~~~~~~ 73 (258)
T PRK13548 3 LEARNLSVRL----GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS-----PDSGEVRLNGRPLADWSPAE 73 (258)
T ss_pred EEEEeEEEEe----CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEEcccCCHHH
Confidence 4445554443 34569999999999999999999999999999999999975 579999999998642 3
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISI 188 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsi 188 (604)
.++.++|++|++.+++.+||+||+.+..... ....++..++++++++.+||.+..++ .+..||||||||++|
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgGe~qrv~l 145 (258)
T PRK13548 74 LARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGR-----DYPQLSGGEQQRVQL 145 (258)
T ss_pred hhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcC-----CcccCCHHHHHHHHH
Confidence 4567999999998888899999998864321 11223334568899999999876664 456999999999999
Q ss_pred HHHHh------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 189 GQELL------INPSLLFLDEPTSGLDSTMAKKILVSLSKLA-EGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 189 a~~L~------~~p~illLDEPtsgLD~~~~~~i~~~l~~la-~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
|++|+ .+|++|+|||||+|||+.++..+.+.|++++ ++|+|||+++|++. .+..++|++++| ++|++++.|
T Consensus 146 a~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l-~~G~i~~~~ 223 (258)
T PRK13548 146 ARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLL-HQGRLVADG 223 (258)
T ss_pred HHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEE-ECCEEEeeC
Confidence 99999 5999999999999999999999999999998 57999999999975 577899999999 899999999
Q ss_pred ChhhHH
Q 046786 262 KGEDVI 267 (604)
Q Consensus 262 ~~~~~~ 267 (604)
+++++.
T Consensus 224 ~~~~~~ 229 (258)
T PRK13548 224 TPAEVL 229 (258)
T ss_pred CHHHHh
Confidence 887654
No 122
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=6.9e-42 Score=338.72 Aligned_cols=196 Identities=30% Similarity=0.549 Sum_probs=170.4
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh------hccccEEEEecCCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA------EVKRRTGFVAQNNV 121 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~------~~~~~i~yv~Q~~~ 121 (604)
++.+|+|+|+++++||+++|+||||||||||||+|+|+++ |++|+|.++|+++.. ..++.++|++|++.
T Consensus 12 ~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 86 (213)
T cd03262 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE-----PDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFN 86 (213)
T ss_pred CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCccchhHHHHHhcceEEecccc
Confidence 3569999999999999999999999999999999999985 579999999998731 34678999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEE
Q 046786 122 FYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFL 201 (604)
Q Consensus 122 l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illL 201 (604)
+++.+|++||+.+..... .....++..++++++++.+|+.+..+ +.+++||||||||++||++|+.+|++++|
T Consensus 87 ~~~~~t~~e~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~la~al~~~p~llll 159 (213)
T cd03262 87 LFPHLTVLENITLAPIKV--KGMSKAEAEERALELLEKVGLADKAD-----AYPAQLSGGQQQRVAIARALAMNPKVMLF 159 (213)
T ss_pred cCCCCcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCCHhHhh-----hCccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999998864311 12234445567889999999987666 44669999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeE
Q 046786 202 DEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSS 257 (604)
Q Consensus 202 DEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~ 257 (604)
||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+++|++++| ++|++
T Consensus 160 DEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l-~~g~i 213 (213)
T cd03262 160 DEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFM-DDGRI 213 (213)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-eCCcC
Confidence 9999999999999999999999888999999999985 677899999999 78864
No 123
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1e-41 Score=344.22 Aligned_cols=217 Identities=28% Similarity=0.404 Sum_probs=181.3
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-----
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----- 107 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----- 107 (604)
++..|+...+ +++.+|+|+|+++++||+++|+|||||||||||++|+|.++ |++|+|.++|+++..
T Consensus 3 i~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~~~~~~ 73 (242)
T TIGR03411 3 LYLEGLSVSF----DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR-----PDEGSVLFGGTDLTGLPEHQ 73 (242)
T ss_pred EEEEeeEEEc----CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEECCeecCCCCHHH
Confidence 3444554433 23569999999999999999999999999999999999985 579999999998742
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCC--C---CCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHH
Q 046786 108 EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLP--N---SLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGE 182 (604)
Q Consensus 108 ~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~--~---~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 182 (604)
..++.++|++|++.+++.+||+||+.+....... . ....++..++++++++.+|+.+..+ +.++.|||||
T Consensus 74 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~Ge 148 (242)
T TIGR03411 74 IARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEAD-----RLAGLLSHGQ 148 (242)
T ss_pred HHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhc-----CChhhCCHHH
Confidence 1245699999999999999999999986432100 0 0122334567899999999987666 4456999999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecC
Q 046786 183 RKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGK 262 (604)
Q Consensus 183 rqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~ 262 (604)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+++|++++| ++|+++..|+
T Consensus 149 ~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l-~~g~~~~~~~ 225 (242)
T TIGR03411 149 KQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVL-HQGSVLAEGS 225 (242)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEE-ECCeEEeeCC
Confidence 9999999999999999999999999999999999999999976 799999999975 677899999999 8999999998
Q ss_pred hhhH
Q 046786 263 GEDV 266 (604)
Q Consensus 263 ~~~~ 266 (604)
++++
T Consensus 226 ~~~~ 229 (242)
T TIGR03411 226 LDQV 229 (242)
T ss_pred HHHH
Confidence 7765
No 124
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-41 Score=346.15 Aligned_cols=221 Identities=22% Similarity=0.372 Sum_probs=181.9
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+.+.+. ++.+|+|+|+++++||+++|+||||||||||||+|+|++++....+++|+|.++|+++..
T Consensus 7 ~l~~~~l~~~~~----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 7 IIETENLNLFYT----DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred eEEEeeeEEEeC----CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 456666655542 356999999999999999999999999999999999998642111468999999998631
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccCCCcCHH
Q 046786 108 --EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLA----RCRNSIIGGRLVRGLSGG 181 (604)
Q Consensus 108 --~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~~~~~~LSgG 181 (604)
..++.++|++|++.+++ +||+||+.+...... .....+..+++++.++.+++. +..+ +.++.||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-----~~~~~LSgG 154 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLN-----TNALSLSGG 154 (254)
T ss_pred HHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHh-----CCcccCCHH
Confidence 34678999999988885 899999998754321 112334456788899999884 2333 456799999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 182 ERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 182 erqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.+|++++| ++|+++..|
T Consensus 155 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~-~~~~~~d~i~~l-~~G~i~~~g 231 (254)
T PRK14273 155 QQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQ-QAGRISDRTAFF-LNGCIEEES 231 (254)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEE-ECCEEEEeC
Confidence 99999999999999999999999999999999999999999964 799999999986 577889999999 899999999
Q ss_pred ChhhHH
Q 046786 262 KGEDVI 267 (604)
Q Consensus 262 ~~~~~~ 267 (604)
+++++.
T Consensus 232 ~~~~~~ 237 (254)
T PRK14273 232 STDELF 237 (254)
T ss_pred CHHHHH
Confidence 988763
No 125
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=7.8e-42 Score=363.54 Aligned_cols=197 Identities=33% Similarity=0.521 Sum_probs=175.1
Q ss_pred ceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--------hccccEEEEecCCCCCCC
Q 046786 54 GVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--------EVKRRTGFVAQNNVFYPH 125 (604)
Q Consensus 54 ~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--------~~~~~i~yv~Q~~~l~~~ 125 (604)
|+|+++++||+++|+||||||||||||+|+|+.+ |++|+|.++|+++.. ..++.++|++|++.+++.
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~-----p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 89 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR-----PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPH 89 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECccCccccccchhhCCeEEEecCCccCCC
Confidence 9999999999999999999999999999999985 579999999998732 245679999999999999
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 046786 126 LTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPT 205 (604)
Q Consensus 126 lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPt 205 (604)
+||+||+.|+.... ...+..++++++++.+||.+..| +.+++|||||||||+||++|+.+|++|+|||||
T Consensus 90 ~tv~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~-----~~~~~LSgGqkqRvalAraL~~~p~lllLDEPt 159 (354)
T TIGR02142 90 LSVRGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLG-----RLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPL 159 (354)
T ss_pred CcHHHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhc-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 99999999875421 22334557899999999987776 456699999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 206 SGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 206 sgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
+|||+.++..+.+.|++++++ |+|||++||++. ++..++|++++| ++|+++..|+++++.
T Consensus 160 s~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l-~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 160 AALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVL-EDGRVAAAGPIAEVW 220 (354)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEE-eCCEEEEECCHHHHh
Confidence 999999999999999999875 899999999985 678899999999 899999999988774
No 126
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=3.3e-42 Score=341.21 Aligned_cols=199 Identities=31% Similarity=0.515 Sum_probs=167.2
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCC--CCC
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFY--PHL 126 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~--~~l 126 (604)
+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++. ..++.++|++|++.++ ..+
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~-~~~~~i~~v~q~~~~~~~~~~ 85 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK-----PTSGSIRVFGKPLE-KERKRIGYVPQRRSIDRDFPI 85 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCCEEEECCccHH-HHHhheEEeccccccccCCCC
Confidence 569999999999999999999999999999999999985 57999999998764 3466899999998763 347
Q ss_pred CHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 046786 127 TVAETLVFTALLRLPN-SLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPT 205 (604)
Q Consensus 127 Tv~e~l~f~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPt 205 (604)
||+||+.+........ ....++..++++++++.+|+.+..+ +.+..||||||||++||++|+.+|++|+|||||
T Consensus 86 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 160 (213)
T cd03235 86 SVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELAD-----RQIGELSGGQQQRVLLARALVQDPDLLLLDEPF 160 (213)
T ss_pred cHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHh-----CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 9999998854321100 0112334457889999999987666 445699999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 206 SGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 206 sgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
+|||+.++..+.+.|++++++|+|||++||++. .+.+.+|++++| ++| +++.|
T Consensus 161 ~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l-~~~-~~~~g 213 (213)
T cd03235 161 AGVDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLL-NRT-VVASG 213 (213)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEE-cCc-EeecC
Confidence 999999999999999999878999999999975 677889999999 665 66654
No 127
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.3e-41 Score=340.50 Aligned_cols=212 Identities=30% Similarity=0.460 Sum_probs=176.7
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+.+.+......+.+|+|+|+++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~~~~~~~~ 80 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD-----GSSGEVSLVGQPLHQMDEE 80 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCeeEEECCEEcccCCHH
Confidence 45666666554321111359999999999999999999999999999999999985 579999999998742
Q ss_pred h---c-cccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHH
Q 046786 108 E---V-KRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGER 183 (604)
Q Consensus 108 ~---~-~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 183 (604)
. . ++.++|++|++.+++.+|+.||+.+....+ .....+..+++.++++.+|+.+..+ +.+..||||||
T Consensus 81 ~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~Ge~ 152 (228)
T PRK10584 81 ARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLD-----HLPAQLSGGEQ 152 (228)
T ss_pred HHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhh-----CChhhCCHHHH
Confidence 1 1 257999999999999999999998865432 1233445567899999999987666 44569999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEE
Q 046786 184 KRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLY 259 (604)
Q Consensus 184 qRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~ 259 (604)
||++||++|+.+|++++|||||+|||+.+...+.+.|++++++ |.|||+++|++. .+ ..+|++++| ++|+++.
T Consensus 153 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l-~~g~i~~ 226 (228)
T PRK10584 153 QRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRL-VNGQLQE 226 (228)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEE-ECCEEEe
Confidence 9999999999999999999999999999999999999999764 899999999986 45 459999999 8999864
No 128
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-41 Score=348.48 Aligned_cols=217 Identities=29% Similarity=0.470 Sum_probs=183.3
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~ 108 (604)
++..|+.+.+. +.+.+|+|+|+++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.. .
T Consensus 4 l~~~~l~~~~~---~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~~~~ 75 (277)
T PRK13652 4 IETRDLCYSYS---GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK-----PTSGSVLIRGEPITKENIRE 75 (277)
T ss_pred EEEEEEEEEeC---CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECCcCCHHH
Confidence 44455554432 23459999999999999999999999999999999999985 679999999998742 4
Q ss_pred ccccEEEEecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHH
Q 046786 109 VKRRTGFVAQNNV-FYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRIS 187 (604)
Q Consensus 109 ~~~~i~yv~Q~~~-l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvs 187 (604)
.++.++|++|++. .+...||.||+.+..... ....++..++++++++.+||.+..+ +.++.||||||||++
T Consensus 76 ~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~Gq~qrl~ 147 (277)
T PRK13652 76 VRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRD-----RVPHHLSGGEKKRVA 147 (277)
T ss_pred HHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhc-----CCcccCCHHHHHHHH
Confidence 5668999999973 333579999998765432 2344555567899999999987666 446699999999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhH
Q 046786 188 IGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266 (604)
Q Consensus 188 ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~ 266 (604)
||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.+|++++| ++|++++.|+++++
T Consensus 148 laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l-~~G~i~~~g~~~~~ 225 (277)
T PRK13652 148 IAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVM-DKGRIVAYGTVEEI 225 (277)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEE-ECCeEEEECCHHHH
Confidence 999999999999999999999999999999999999875 899999999986 677899999999 89999999999887
Q ss_pred H
Q 046786 267 I 267 (604)
Q Consensus 267 ~ 267 (604)
.
T Consensus 226 ~ 226 (277)
T PRK13652 226 F 226 (277)
T ss_pred h
Confidence 4
No 129
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-41 Score=346.62 Aligned_cols=223 Identities=23% Similarity=0.389 Sum_probs=182.0
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+.+.+ +++.+|+|+|+++++||+++|+|||||||||||++|+|+.++....|++|+|.++|+++..
T Consensus 12 ~l~~~~l~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 12 QIKVENLNLWY----GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred eEEEeeeEEEe----CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 46666665543 2456999999999999999999999999999999999987521001369999999998631
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHH
Q 046786 108 --EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKR 185 (604)
Q Consensus 108 --~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 185 (604)
..++.++|++|++.+++ +|++||+.+..... ..+.++..++++++++.+|+.+...... ++.++.||||||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgG~~qr 162 (258)
T PRK14268 88 VVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRL-KSPALSLSGGQQQR 162 (258)
T ss_pred HHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhh-cCChhhCCHHHHHH
Confidence 34567999999998888 89999999875432 2234444556888999999843211111 24567999999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhh
Q 046786 186 ISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGED 265 (604)
Q Consensus 186 vsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~ 265 (604)
|+||++|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||+++|++. .+.+.+|++++| ++|++++.|++++
T Consensus 163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l-~~G~i~~~~~~~~ 239 (258)
T PRK14268 163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFF-LMGELIEFGQTRQ 239 (258)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEE-ECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999975 799999999975 577889999999 8999999999876
Q ss_pred H
Q 046786 266 V 266 (604)
Q Consensus 266 ~ 266 (604)
+
T Consensus 240 ~ 240 (258)
T PRK14268 240 I 240 (258)
T ss_pred H
Confidence 5
No 130
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-41 Score=347.43 Aligned_cols=229 Identities=23% Similarity=0.352 Sum_probs=187.6
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+.+.+.. ..+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ |++|+|.++|+++..
T Consensus 7 ~l~i~~l~~~~~~--~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~~~~~~~~ 79 (269)
T PRK13648 7 IIVFKNVSFQYQS--DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK-----VKSGEIFYNNQAITDDNFE 79 (269)
T ss_pred eEEEEEEEEEcCC--CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECCcCCHH
Confidence 3555566554422 12459999999999999999999999999999999999985 579999999998742
Q ss_pred hccccEEEEecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHH
Q 046786 108 EVKRRTGFVAQNNV-FYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRI 186 (604)
Q Consensus 108 ~~~~~i~yv~Q~~~-l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 186 (604)
..++.++|++|++. +++..|+.+|+.+..... ....++..++++++++.+|+.+..+ ..++.||||||||+
T Consensus 80 ~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrl 151 (269)
T PRK13648 80 KLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERAD-----YEPNALSGGQKQRV 151 (269)
T ss_pred HHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhh-----CCcccCCHHHHHHH
Confidence 45678999999974 677789999998875432 2334444567889999999987666 44669999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhh
Q 046786 187 SIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGED 265 (604)
Q Consensus 187 sia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~ 265 (604)
+||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.. +|++++| ++|++++.|++++
T Consensus 152 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~~-~d~i~~l-~~G~i~~~g~~~~ 228 (269)
T PRK13648 152 AIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAME-ADHVIVM-NKGTVYKEGTPTE 228 (269)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHhc-CCEEEEE-ECCEEEEecCHHH
Confidence 9999999999999999999999999999999999999864 899999999986 4554 9999999 8999999999887
Q ss_pred HHH---HHHhCCCCCC
Q 046786 266 VIN---YFAGIGYVPS 278 (604)
Q Consensus 266 ~~~---~f~~~g~~~p 278 (604)
+.+ .+...|+++|
T Consensus 229 ~~~~~~~~~~~~~~~~ 244 (269)
T PRK13648 229 IFDHAEELTRIGLDLP 244 (269)
T ss_pred HhcCHHHHHhcCCCCC
Confidence 632 3444444433
No 131
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-41 Score=347.54 Aligned_cols=226 Identities=30% Similarity=0.447 Sum_probs=186.0
Q ss_pred eeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh------
Q 046786 34 KKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA------ 107 (604)
Q Consensus 34 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~------ 107 (604)
+..|+...+. +.+.+|+|+|+++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 3 ~~~~l~~~~~---~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~~~~~~~~~~ 74 (275)
T PRK13639 3 ETRDLKYSYP---DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK-----PTSGEVLIKGEPIKYDKKSLL 74 (275)
T ss_pred EEEEEEEEeC---CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCEECccccchHH
Confidence 4445544432 23469999999999999999999999999999999999985 569999999998731
Q ss_pred hccccEEEEecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHH
Q 046786 108 EVKRRTGFVAQNNV-FYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRI 186 (604)
Q Consensus 108 ~~~~~i~yv~Q~~~-l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 186 (604)
..++.++|++|++. .+...||.||+.+..... ....++..+++.++++.+||.+..++ .+++||||||||+
T Consensus 75 ~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~-----~~~~LS~Gq~qrv 146 (275)
T PRK13639 75 EVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENK-----PPHHLSGGQKKRV 146 (275)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcC-----ChhhCCHHHHHHH
Confidence 24578999999963 233469999998764321 23445555678899999999877764 4569999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhH
Q 046786 187 SIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266 (604)
Q Consensus 187 sia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~ 266 (604)
+||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+..++|++++| ++|+++..|+++++
T Consensus 147 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l-~~G~i~~~g~~~~~ 224 (275)
T PRK13639 147 AIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVM-SDGKIIKEGTPKEV 224 (275)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEE-ECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999877999999999975 577889999999 89999999999887
Q ss_pred H---HHHHhCCCCC
Q 046786 267 I---NYFAGIGYVP 277 (604)
Q Consensus 267 ~---~~f~~~g~~~ 277 (604)
. +.....|...
T Consensus 225 ~~~~~~~~~~~~~~ 238 (275)
T PRK13639 225 FSDIETIRKANLRL 238 (275)
T ss_pred hcChHHHHhcCCCC
Confidence 4 3344445443
No 132
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=2e-41 Score=342.22 Aligned_cols=210 Identities=33% Similarity=0.420 Sum_probs=175.0
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h-ccccEEEEecCCCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E-VKRRTGFVAQNNVF 122 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~-~~~~i~yv~Q~~~l 122 (604)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+. .|++|+|.++|+++.. . .+..++|++|++.+
T Consensus 12 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~ 88 (243)
T TIGR01978 12 DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSY---EVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEE 88 (243)
T ss_pred CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCCcceEEECCEecCCCCHHHhhccceEeeeccccc
Confidence 45699999999999999999999999999999999998520 2579999999998742 2 23459999999999
Q ss_pred CCCCCHHHHHHHHHHhcCC---C-CCCHHHHHHHHHHHHHHcCCCc-cccccccCccCC-CcCHHHHHHHHHHHHHhhCC
Q 046786 123 YPHLTVAETLVFTALLRLP---N-SLKREEKVLHAEAVINQLGLAR-CRNSIIGGRLVR-GLSGGERKRISIGQELLINP 196 (604)
Q Consensus 123 ~~~lTv~e~l~f~~~~~~~---~-~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~-~LSgGerqRvsia~~L~~~p 196 (604)
++.+|++|++.+....... . ....++..+++.++++.+||.+ ..+ +.+. +||||||||++||++|+.+|
T Consensus 89 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~~LS~G~~qrl~la~al~~~p 163 (243)
T TIGR01978 89 IPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLN-----RSVNEGFSGGEKKRNEILQMALLEP 163 (243)
T ss_pred cCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcc-----cccccCcCHHHHHHHHHHHHHhcCC
Confidence 9999999999886543211 0 1123334467889999999973 444 3344 59999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhh-cCeEEEEecCCeEEEecChhhHH
Q 046786 197 SLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYM-FNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 197 ~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~-~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+... +|++++| ++|++++.|+++++.
T Consensus 164 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l-~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 164 KLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVL-LDGRIVKSGDVELAK 233 (243)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEE-eCCEEEEecCHHHhc
Confidence 999999999999999999999999999878999999999986 56666 7999999 899999999987543
No 133
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-41 Score=347.13 Aligned_cols=218 Identities=25% Similarity=0.403 Sum_probs=182.2
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~ 108 (604)
++..|+...+ +++.+|+|+|+++++||+++|+||||||||||||+|+|+++ |++|+|.++|+++.. .
T Consensus 3 l~~~~l~~~~----~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~~~~ 73 (255)
T PRK11231 3 LRTENLTVGY----GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT-----PQSGTVFLGDKPISMLSSRQ 73 (255)
T ss_pred EEEEeEEEEE----CCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCCcEEEECCEEhHHCCHHH
Confidence 4445555443 34579999999999999999999999999999999999875 579999999998642 3
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLP-NSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRIS 187 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvs 187 (604)
.++.++|++|+..+++.+|+.||+.++...... .....++..++++++++.+||.+..++ .++.||||||||++
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~ 148 (255)
T PRK11231 74 LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADR-----RLTDLSGGQRQRAF 148 (255)
T ss_pred HhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcC-----CcccCCHHHHHHHH
Confidence 456799999999888889999999875311000 011122344568899999999876664 46699999999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhH
Q 046786 188 IGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266 (604)
Q Consensus 188 ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~ 266 (604)
||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.+|++++| ++|+++..|++++.
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l-~~G~i~~~~~~~~~ 225 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVL-ANGHVMAQGTPEEV 225 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEE-ECCeEEEEcCHHHh
Confidence 999999999999999999999999999999999999877999999999986 678899999999 89999999987765
No 134
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-41 Score=346.40 Aligned_cols=206 Identities=25% Similarity=0.377 Sum_probs=177.4
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhcccc
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRR 112 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 112 (604)
++..|+.+.+ +++.+|+|+|+++++||+++|+||||||||||||+|+|+++ |++|+|.++|.++. ..++.
T Consensus 13 l~i~~l~~~~----~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~-~~~~~ 82 (257)
T PRK11247 13 LLLNAVSKRY----GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET-----PSAGELLAGTAPLA-EARED 82 (257)
T ss_pred EEEEEEEEEE----CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEHH-HhhCc
Confidence 5666665544 23569999999999999999999999999999999999985 57999999998764 34678
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHH
Q 046786 113 TGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQEL 192 (604)
Q Consensus 113 i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L 192 (604)
++|++|++.+++.+||+||+.+... . ...+++.++++.+||.+..+ +.++.||||||||++||++|
T Consensus 83 i~~v~q~~~l~~~~tv~enl~~~~~-------~--~~~~~~~~~l~~~gl~~~~~-----~~~~~LSgGqkqrl~laraL 148 (257)
T PRK11247 83 TRLMFQDARLLPWKKVIDNVGLGLK-------G--QWRDAALQALAAVGLADRAN-----EWPAALSGGQKQRVALARAL 148 (257)
T ss_pred eEEEecCccCCCCCcHHHHHHhccc-------c--hHHHHHHHHHHHcCChhHhc-----CChhhCCHHHHHHHHHHHHH
Confidence 9999999999998999999987521 0 12346788999999987666 44669999999999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChh
Q 046786 193 LINPSLLFLDEPTSGLDSTMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGE 264 (604)
Q Consensus 193 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~ 264 (604)
+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||+++|++. .+...+|++++| ++|++++.|+.+
T Consensus 149 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l-~~G~i~~~~~~~ 219 (257)
T PRK11247 149 IHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLI-EEGKIGLDLTVD 219 (257)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-ECCEEEeecccc
Confidence 999999999999999999999999999999965 5899999999986 577889999999 899999887653
No 135
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-41 Score=361.42 Aligned_cols=193 Identities=32% Similarity=0.539 Sum_probs=173.1
Q ss_pred ceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--------hccccEEEEecCCCCCCC
Q 046786 54 GVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--------EVKRRTGFVAQNNVFYPH 125 (604)
Q Consensus 54 ~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--------~~~~~i~yv~Q~~~l~~~ 125 (604)
|+|+++++||+++|+||||||||||||+|+|+++ |++|+|.++|+++.. ..++.++||+|+..++|+
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~-----p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 90 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR-----PQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPH 90 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCC
Confidence 8999999999999999999999999999999985 579999999998642 235789999999999999
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 046786 126 LTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPT 205 (604)
Q Consensus 126 lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPt 205 (604)
+||+||+.|+.. ....++++++++.+||.+..+ +.+++|||||||||+|||+|+.+|++|+|||||
T Consensus 91 ~tv~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~-----~~~~~LSgGq~qRvalaraL~~~p~llLLDEPt 156 (352)
T PRK11144 91 YKVRGNLRYGMA---------KSMVAQFDKIVALLGIEPLLD-----RYPGSLSGGEKQRVAIGRALLTAPELLLMDEPL 156 (352)
T ss_pred CcHHHHHHhhhh---------hhhHHHHHHHHHHcCCchhhh-----CCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 999999988632 112356889999999987766 456799999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 206 SGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 206 sgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
+|||+.++..+.+.|++++++ |+|||++||++. ++..++|++++| ++|+++..|+++++.
T Consensus 157 s~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l-~~G~i~~~g~~~~i~ 217 (352)
T PRK11144 157 ASLDLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVL-EQGKVKAFGPLEEVW 217 (352)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEE-eCCEEEEecCHHHHH
Confidence 999999999999999999875 899999999975 688999999999 899999999998874
No 136
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-41 Score=348.71 Aligned_cols=218 Identities=27% Similarity=0.432 Sum_probs=183.9
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|++..+.. +++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ |++|+|.++|+++..
T Consensus 7 ~l~~~nl~~~~~~--~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~i~~~~~~ 79 (271)
T PRK13632 7 MIKVENVSFSYPN--SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK-----PQSGEIKIDGITISKENLK 79 (271)
T ss_pred EEEEEeEEEEcCC--CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEecCcCCHH
Confidence 4666666554421 24569999999999999999999999999999999999985 579999999998742
Q ss_pred hccccEEEEecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHH
Q 046786 108 EVKRRTGFVAQNNV-FYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRI 186 (604)
Q Consensus 108 ~~~~~i~yv~Q~~~-l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 186 (604)
.+++.++|++|++. .++.+||+||+.+..... ....++..++++++++.+||.+..++ .++.||||||||+
T Consensus 80 ~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl 151 (271)
T PRK13632 80 EIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDK-----EPQNLSGGQKQRV 151 (271)
T ss_pred HHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhC-----CcccCCHHHHHHH
Confidence 35678999999974 567789999999865432 22344455678999999999877664 4569999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhh
Q 046786 187 SIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGED 265 (604)
Q Consensus 187 sia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~ 265 (604)
+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ ++|||+++|++.. + ..+|++++| ++|+++..|++++
T Consensus 152 ~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~~l-~~G~i~~~g~~~~ 228 (271)
T PRK13632 152 AIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVIVF-SEGKLIAQGKPKE 228 (271)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEEEE-ECCEEEEecCHHH
Confidence 9999999999999999999999999999999999999876 5999999999864 4 479999999 8999999999877
Q ss_pred HH
Q 046786 266 VI 267 (604)
Q Consensus 266 ~~ 267 (604)
+.
T Consensus 229 ~~ 230 (271)
T PRK13632 229 IL 230 (271)
T ss_pred Hh
Confidence 64
No 137
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=2.1e-41 Score=347.16 Aligned_cols=222 Identities=21% Similarity=0.369 Sum_probs=184.6
Q ss_pred hheeeeEEEEEeccc-----cccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCC
Q 046786 32 MLKKVNMLVIIKNSD-----EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS 106 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~-----~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~ 106 (604)
+++..|+++.+..+. +.+.+|+|+|+++++||+++|+|||||||||||++|+|+++ |++|+|.++|.++.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~ 78 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE-----PTSGELLIDDHPLH 78 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEECC
Confidence 466667766653211 13569999999999999999999999999999999999985 57999999999874
Q ss_pred h----hccccEEEEecCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCcC
Q 046786 107 A----EVKRRTGFVAQNNV--FYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLA-RCRNSIIGGRLVRGLS 179 (604)
Q Consensus 107 ~----~~~~~i~yv~Q~~~--l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LS 179 (604)
. ..++.++|++|++. +++.+|+.|++.+...... .....+..+.++++++.+||. +..+ ..+..||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~LS 151 (267)
T PRK15112 79 FGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHAS-----YYPHMLA 151 (267)
T ss_pred CCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHh-----cCchhcC
Confidence 2 23457999999975 6788899999988655431 123344456788999999994 4444 3456999
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEE
Q 046786 180 GGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSL 258 (604)
Q Consensus 180 gGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v 258 (604)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+..++|++++| ++|+++
T Consensus 152 ~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l-~~G~i~ 229 (267)
T PRK15112 152 PGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVM-HQGEVV 229 (267)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEE-ECCEEE
Confidence 99999999999999999999999999999999999999999999874 899999999985 677889999999 899999
Q ss_pred EecChhhHH
Q 046786 259 YFGKGEDVI 267 (604)
Q Consensus 259 ~~G~~~~~~ 267 (604)
..|+++++.
T Consensus 230 ~~~~~~~~~ 238 (267)
T PRK15112 230 ERGSTADVL 238 (267)
T ss_pred ecCCHHHHh
Confidence 999877653
No 138
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-41 Score=343.12 Aligned_cols=223 Identities=23% Similarity=0.360 Sum_probs=180.4
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-----
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----- 107 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----- 107 (604)
++..|+.+.+ +++.+|+|+|+++++||+++|+||||||||||||+|+|+.+.....|++|+|.++|+++..
T Consensus 7 l~~~~l~~~~----~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 7 MEARGLSFFY----GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEeeeEEEE----CCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 4555655544 2356999999999999999999999999999999999986310001469999999998742
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHH
Q 046786 108 -EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRI 186 (604)
Q Consensus 108 -~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 186 (604)
..++.++|++|++.+++ .||+||+.+....+. ....++..++++++++.+|+.+...... ++.++.|||||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv 158 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRL-HESALGLSGGQQQRL 158 (253)
T ss_pred HHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHHHHHHH
Confidence 34568999999998888 599999998754321 1123344567888999999864221111 255779999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhH
Q 046786 187 SIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266 (604)
Q Consensus 187 sia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~ 266 (604)
+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||+++|++. .+...+|++++| ++|+++..|+++++
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l-~~G~i~~~g~~~~~ 235 (253)
T PRK14242 159 CIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFF-YMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEE-ECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999965 799999999985 577899999999 89999999988765
No 139
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-41 Score=348.07 Aligned_cols=220 Identities=26% Similarity=0.417 Sum_probs=183.7
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+.+.+ +++.+|+|+|+++++||+++|+||||||||||||+|+|+++ |++|+|.++|+++..
T Consensus 7 ~l~i~~l~~~~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~~~~~ 77 (265)
T PRK10253 7 RLRGEQLTLGY----GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT-----PAHGHVWLDGEHIQHYASK 77 (265)
T ss_pred EEEEEEEEEEE----CCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCcEEEECCEEhhhCCHH
Confidence 45555655544 24569999999999999999999999999999999999985 579999999998742
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHH
Q 046786 108 EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPN-SLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRI 186 (604)
Q Consensus 108 ~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 186 (604)
..++.++|++|++.+++.+|++||+.+......+. ....+...++++++++.+||.+..+ +.++.||||||||+
T Consensus 78 ~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~Gq~qrv 152 (265)
T PRK10253 78 EVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLAD-----QSVDTLSGGQRQRA 152 (265)
T ss_pred HHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-----CCcccCChHHHHHH
Confidence 34567999999999998999999998752111000 0111233456889999999987666 45679999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhh
Q 046786 187 SIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGED 265 (604)
Q Consensus 187 sia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~ 265 (604)
+||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.+++|++++| ++|++++.|++++
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l-~~G~i~~~g~~~~ 230 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIAL-REGKIVAQGAPKE 230 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE-ECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999874 899999999986 688999999999 8999999999877
Q ss_pred HH
Q 046786 266 VI 267 (604)
Q Consensus 266 ~~ 267 (604)
+.
T Consensus 231 ~~ 232 (265)
T PRK10253 231 IV 232 (265)
T ss_pred Hh
Confidence 64
No 140
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=1.7e-41 Score=338.60 Aligned_cols=198 Identities=28% Similarity=0.443 Sum_probs=174.6
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLT 127 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lT 127 (604)
++.+|+|+|+++++||+++|+|||||||||||++|+|.++ |++|+|.++|+++....++.++|++|++.+++.+|
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t 86 (223)
T TIGR03740 12 KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR-----PTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLT 86 (223)
T ss_pred CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEeccccccccEEEEcCCCCccccCC
Confidence 4569999999999999999999999999999999999885 57999999999875432357999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 046786 128 VAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSG 207 (604)
Q Consensus 128 v~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsg 207 (604)
++||+.+....+. .. .+++.++++.+|+.+..|. .+..||||||||++||++|+.+|++++|||||+|
T Consensus 87 ~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~~rv~laral~~~p~llllDEP~~~ 154 (223)
T TIGR03740 87 ARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKK-----KAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNG 154 (223)
T ss_pred HHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhh-----hHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccC
Confidence 9999988764421 11 2357889999999877664 4569999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChh
Q 046786 208 LDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGE 264 (604)
Q Consensus 208 LD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~ 264 (604)
||+.++..+.+.|++++++|+|||++||++. .+.+.+|++++| ++|++++.|++.
T Consensus 155 LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l-~~g~i~~~~~~~ 209 (223)
T TIGR03740 155 LDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGII-SEGVLGYQGKIN 209 (223)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEE-eCCEEEEecChh
Confidence 9999999999999999877999999999986 577899999999 899999999865
No 141
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-41 Score=348.17 Aligned_cols=218 Identities=26% Similarity=0.411 Sum_probs=184.4
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccc---cEEEECCEeCCh-
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQ---GHITYNGKQFSA- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~---G~I~~~G~~~~~- 107 (604)
+++..|+.+.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++ |++ |+|.++|+++..
T Consensus 5 ~l~i~~l~~~~~~--~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~-----p~~g~~G~i~i~g~~~~~~ 77 (282)
T PRK13640 5 IVEFKHVSFTYPD--SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL-----PDDNPNSKITVDGITLTAK 77 (282)
T ss_pred eEEEEEEEEEcCC--CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC-----CCCCCCcEEEECCEECCcC
Confidence 3555666554421 23469999999999999999999999999999999999986 344 999999998753
Q ss_pred ---hccccEEEEecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHH
Q 046786 108 ---EVKRRTGFVAQNNV-FYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGER 183 (604)
Q Consensus 108 ---~~~~~i~yv~Q~~~-l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 183 (604)
..++.+||++|++. .++..||.||+.|..... ..+.++..++++++++.+||.+..+ +.++.||||||
T Consensus 78 ~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~-----~~~~~LS~G~~ 149 (282)
T PRK13640 78 TVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYID-----SEPANLSGGQK 149 (282)
T ss_pred CHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhc-----CCcccCCHHHH
Confidence 34568999999974 567789999998865332 2345556677899999999987666 45679999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecC
Q 046786 184 KRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGK 262 (604)
Q Consensus 184 qRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~ 262 (604)
||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++.. + ..+|++++| ++|+++..|+
T Consensus 150 qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l-~~G~i~~~g~ 226 (282)
T PRK13640 150 QRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVL-DDGKLLAQGS 226 (282)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEE-ECCEEEEeCC
Confidence 9999999999999999999999999999999999999999875 9999999999864 4 579999999 8999999999
Q ss_pred hhhHH
Q 046786 263 GEDVI 267 (604)
Q Consensus 263 ~~~~~ 267 (604)
++++.
T Consensus 227 ~~~~~ 231 (282)
T PRK13640 227 PVEIF 231 (282)
T ss_pred HHHHh
Confidence 98775
No 142
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-41 Score=347.70 Aligned_cols=219 Identities=23% Similarity=0.341 Sum_probs=182.8
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+.+.+ +++.+|+|+||++++||+++|+||||||||||+|+|+|+.+ |++|+|.++|+++..
T Consensus 11 ~l~i~~l~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~~~ 81 (265)
T PRK10575 11 TFALRNVSFRV----PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP-----PSEGEILLDAQPLESWSSK 81 (265)
T ss_pred eEEEeeEEEEE----CCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCCEEEECCEehhhCCHH
Confidence 45666665544 23579999999999999999999999999999999999875 579999999998632
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHH
Q 046786 108 EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPN-SLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRI 186 (604)
Q Consensus 108 ~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 186 (604)
..++.++|++|+..+++.+|+.||+.+........ ...+....++++++++.++|.+..++ .++.||||||||+
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv 156 (265)
T PRK10575 82 AFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHR-----LVDSLSGGERQRA 156 (265)
T ss_pred HHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-----CcccCCHHHHHHH
Confidence 34567999999988888999999998753211000 01122334568899999999876664 4569999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhh
Q 046786 187 SIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGED 265 (604)
Q Consensus 187 sia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~ 265 (604)
+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.+.+|++++| ++|+++..|++++
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l-~~G~i~~~~~~~~ 234 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVAL-RGGEMIAQGTPAE 234 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE-ECCeEEEecCHHH
Confidence 9999999999999999999999999999999999999865 899999999975 677899999999 8999999998776
Q ss_pred H
Q 046786 266 V 266 (604)
Q Consensus 266 ~ 266 (604)
+
T Consensus 235 ~ 235 (265)
T PRK10575 235 L 235 (265)
T ss_pred h
Confidence 5
No 143
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=2.2e-41 Score=340.90 Aligned_cols=201 Identities=32% Similarity=0.457 Sum_probs=173.8
Q ss_pred ccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh---hccccEEEEe-cCCC
Q 046786 46 DEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---EVKRRTGFVA-QNNV 121 (604)
Q Consensus 46 ~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---~~~~~i~yv~-Q~~~ 121 (604)
++++++|+|+|+++++||+++|+|||||||||||++|+|+++ |++|+|.++|+++.. ..++.++|++ |++.
T Consensus 31 ~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~ 105 (236)
T cd03267 31 YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ-----PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQ 105 (236)
T ss_pred cCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCEEccccchhhcccEEEEcCCccc
Confidence 455679999999999999999999999999999999999885 579999999987632 3466899998 5567
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEE
Q 046786 122 FYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFL 201 (604)
Q Consensus 122 l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illL 201 (604)
+++.+|++|++.+....+ ....++..++++++++.+|+.+..|+. ++.||||||||++||++|+.+|++++|
T Consensus 106 ~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~llll 177 (236)
T cd03267 106 LWWDLPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTP-----VRQLSLGQRMRAEIAAALLHEPEILFL 177 (236)
T ss_pred cCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 888999999998875542 223444456788899999998877754 458999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 202 DEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 202 DEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
||||+|||+.++..+.+.|++++++ |+|||+++|++. .+..++|++++| .+|++++.|
T Consensus 178 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l-~~G~i~~~g 236 (236)
T cd03267 178 DEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVI-DKGRLLYDG 236 (236)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEE-eCCEEEecC
Confidence 9999999999999999999999864 899999999985 677889999999 899998765
No 144
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-41 Score=344.70 Aligned_cols=225 Identities=24% Similarity=0.378 Sum_probs=182.3
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+.+.+ +++.+|+|+|++|++||+++|+||||||||||||+|+|+.++....|++|+|.++|+++..
T Consensus 19 ~l~~~nl~~~~----~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~ 94 (267)
T PRK14235 19 KMRARDVSVFY----GEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94 (267)
T ss_pred eEEEEeEEEEE----CCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence 45566665544 2356999999999999999999999999999999999987531112479999999998742
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHH
Q 046786 108 --EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKR 185 (604)
Q Consensus 108 --~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 185 (604)
.+++.++|++|++.+++. ||.||+.+....+. ...+..+..+++.++++.+|+.+...... ++.+++||||||||
T Consensus 95 ~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qr 171 (267)
T PRK14235 95 VVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHG-LARSKAELDEIVETSLRKAGLWEEVKDRL-HEPGTGLSGGQQQR 171 (267)
T ss_pred hHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcc-cccchHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHHHHHH
Confidence 346689999999988875 99999998754331 11123334567889999999964211111 24567999999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhh
Q 046786 186 ISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGED 265 (604)
Q Consensus 186 vsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~ 265 (604)
++||++|+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|++. .+...+|++++| ++|+++..|++++
T Consensus 172 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l-~~G~i~~~g~~~~ 248 (267)
T PRK14235 172 LCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFF-HLGNLVEVGDTEK 248 (267)
T ss_pred HHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEE-ECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999976 789999999975 677889999999 8999999998876
Q ss_pred H
Q 046786 266 V 266 (604)
Q Consensus 266 ~ 266 (604)
+
T Consensus 249 ~ 249 (267)
T PRK14235 249 M 249 (267)
T ss_pred H
Confidence 5
No 145
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-41 Score=342.69 Aligned_cols=225 Identities=21% Similarity=0.350 Sum_probs=182.1
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCC------
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS------ 106 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~------ 106 (604)
++..|+.+.+ +++.+|+|+|+++++||+++|+||||||||||||+|+|+.++....|++|+|.++|+++.
T Consensus 5 l~i~~v~~~~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 5 IDVKDLNIYY----GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred EEEeeEEEEE----CCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4555655544 235699999999999999999999999999999999998853111136999999999863
Q ss_pred hhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHH
Q 046786 107 AEVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRI 186 (604)
Q Consensus 107 ~~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 186 (604)
...++.++|++|++.+++.+||+||+.+....+. ..+.++..++++++++.+|+........ ++.+++|||||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv 157 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRL-DKPGGGLSGGQQQRL 157 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHh-hCCcccCCHHHHHHH
Confidence 1346789999999999999999999998754321 1133444567889999999842111111 245679999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEec------CCeEEEe
Q 046786 187 SIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSS------DGSSLYF 260 (604)
Q Consensus 187 sia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~------~G~~v~~ 260 (604)
+||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.+|+++++ + +|++++.
T Consensus 158 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l-~~~~~~~~g~i~~~ 234 (258)
T PRK14241 158 CIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFF-NLEATGKPGRLVEI 234 (258)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEE-ecccCCCCceEEec
Confidence 999999999999999999999999999999999999965 689999999975 577899999999 5 7999999
Q ss_pred cChhhHH
Q 046786 261 GKGEDVI 267 (604)
Q Consensus 261 G~~~~~~ 267 (604)
|+++++.
T Consensus 235 ~~~~~~~ 241 (258)
T PRK14241 235 DDTEKIF 241 (258)
T ss_pred CCHHHHH
Confidence 9987764
No 146
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=1.5e-41 Score=340.73 Aligned_cols=200 Identities=31% Similarity=0.509 Sum_probs=171.9
Q ss_pred eeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHH
Q 046786 52 LKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTVAET 131 (604)
Q Consensus 52 L~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~ 131 (604)
|+|+|+++++||+++|+||||||||||+|+|+|+.+ |++|+|.++|+++... ....+|++|++.+++.+||+||
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~-~~~~~~v~q~~~l~~~~tv~e~ 74 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ-----PTSGGVILEGKQITEP-GPDRMVVFQNYSLLPWLTVREN 74 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCCC-ChhheEEecCcccCCCCCHHHH
Confidence 589999999999999999999999999999999985 5799999999987532 1235899999999999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH
Q 046786 132 LVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDST 211 (604)
Q Consensus 132 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~ 211 (604)
+.+......+ ...+++..+++.++++.+||.+..++ .+++||||||||++||++|+.+|++|+|||||+|||+.
T Consensus 75 l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~ 148 (230)
T TIGR01184 75 IALAVDRVLP-DLSKSERRAIVEEHIALVGLTEAADK-----RPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDAL 148 (230)
T ss_pred HHHHHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHH
Confidence 9886431111 23344555678899999999876664 45699999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhh
Q 046786 212 MAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGED 265 (604)
Q Consensus 212 ~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~ 265 (604)
++..+.+.|++++++ |+|||+++|++. .+.+.+|++++| ++|+++..|+..+
T Consensus 149 ~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l-~~G~i~~~~~~~~ 201 (230)
T TIGR01184 149 TRGNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVML-TNGPAANIGQILE 201 (230)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEE-eCCcEecccCcee
Confidence 999999999999874 899999999986 678899999999 8999998886543
No 147
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-41 Score=341.15 Aligned_cols=221 Identities=22% Similarity=0.355 Sum_probs=179.7
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCC---CCCCCCccccEEEECCEeCCh--
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRL---SNGKDTVTQGHITYNGKQFSA-- 107 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~---~~~~~~~~~G~I~~~G~~~~~-- 107 (604)
++..|+...+ +.+.+|+|+|+++++||+++|+||||||||||+|+|+|+. ++ .+++|+|.++|+++..
T Consensus 4 l~~~~~~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~---~~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14245 4 IDARDVNFWY----GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPA---TRLEGEIRIDGRNIYDKG 76 (250)
T ss_pred EEEEEEEEEE----CCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCC---CCCceEEEECCEeccccc
Confidence 4455555443 2356999999999999999999999999999999999973 21 1258999999998742
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHH
Q 046786 108 ----EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGER 183 (604)
Q Consensus 108 ----~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 183 (604)
..++.++|++|++.+++ .|+.||+.+....+. ....+...+.++++++.+||.+...+.. ++.++.||||||
T Consensus 77 ~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~ 152 (250)
T PRK14245 77 VQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKL-KESAFALSGGQQ 152 (250)
T ss_pred ccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhh-hCCcccCCHHHH
Confidence 34567999999998887 599999988754331 1122334456889999999964321111 255779999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecCh
Q 046786 184 KRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKG 263 (604)
Q Consensus 184 qRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~ 263 (604)
||++||++|+.+|++++|||||+|||+.++..+.+.|++++ +|+|||+++|++. .+.+.+|++++| ++|++++.|++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l-~~G~~~~~~~~ 229 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFF-YMGEMVEYDDT 229 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEE-ECCEEEEECCH
Confidence 99999999999999999999999999999999999999996 4799999999986 577899999999 89999999998
Q ss_pred hhHH
Q 046786 264 EDVI 267 (604)
Q Consensus 264 ~~~~ 267 (604)
+++.
T Consensus 230 ~~~~ 233 (250)
T PRK14245 230 KKIF 233 (250)
T ss_pred HHHh
Confidence 8774
No 148
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-41 Score=340.99 Aligned_cols=224 Identities=23% Similarity=0.359 Sum_probs=181.9
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-----
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----- 107 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----- 107 (604)
++..|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|++++....|++|+|.++|+++..
T Consensus 5 l~~~nl~~~~~----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 80 (252)
T PRK14256 5 VKLEQLNVHFG----KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP 80 (252)
T ss_pred EEEEEEEEEeC----CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCCh
Confidence 45556555442 356999999999999999999999999999999999987410001358999999998732
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHH
Q 046786 108 -EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRI 186 (604)
Q Consensus 108 -~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 186 (604)
..++.++|++|+..+++.+|++||+.+..... ......+..++++++++.+|+.+...... +..++.||||||||+
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrl 157 (252)
T PRK14256 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN--GRVNRSEADEIVESSLKRVALWDEVKDRL-KSNAMELSGGQQQRL 157 (252)
T ss_pred HHhhccEEEEecCCCCCCcCcHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcCcCCHHHHHHH
Confidence 34678999999999999999999998765432 11223344456889999999864221111 145679999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhH
Q 046786 187 SIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266 (604)
Q Consensus 187 sia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~ 266 (604)
+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.+|++++| .+|+++..|++++.
T Consensus 158 ~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l-~~G~i~~~~~~~~~ 234 (252)
T PRK14256 158 CIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFF-YMGDLVECGETKKI 234 (252)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEE-ECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999976 689999999975 677899999999 89999999998765
No 149
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=3.2e-41 Score=343.67 Aligned_cols=207 Identities=27% Similarity=0.437 Sum_probs=176.5
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----hccccEEEEecCCCCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----EVKRRTGFVAQNNVFY 123 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~ 123 (604)
++.+|+|+|+++++||+++|+|||||||||||++|+|+++ |++|+|.++|+++.. ..++.++|++|++.++
T Consensus 13 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 87 (256)
T TIGR03873 13 GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR-----PDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTA 87 (256)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCCEEEECCEEcccCCHHHHhhheEEecccCccC
Confidence 4569999999999999999999999999999999999985 579999999998742 3456799999998878
Q ss_pred CCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEe
Q 046786 124 PHLTVAETLVFTALLRLP-NSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLD 202 (604)
Q Consensus 124 ~~lTv~e~l~f~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLD 202 (604)
+.+||+||+.+....... ......+..+++.++++.+|+.+..++ .+..||||||||++||++|+.+|++++||
T Consensus 88 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~la~al~~~p~llllD 162 (256)
T TIGR03873 88 VPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADR-----DMSTLSGGERQRVHVARALAQEPKLLLLD 162 (256)
T ss_pred CCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 889999999875311000 011122334578899999999876664 45699999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhH
Q 046786 203 EPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266 (604)
Q Consensus 203 EPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~ 266 (604)
|||+|||+.+...+.+.|++++++|.|||+++|++. .+.+.+|++++| ++|+++..|+++++
T Consensus 163 EPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l-~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 163 EPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVL-DGGRVVAAGPPREV 224 (256)
T ss_pred CccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE-eCCCEEEecCHHHh
Confidence 999999999999999999999877999999999986 677899999999 89999999988765
No 150
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-41 Score=348.92 Aligned_cols=219 Identities=18% Similarity=0.332 Sum_probs=180.5
Q ss_pred heeeeEEEEEeccc-cccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCC-----
Q 046786 33 LKKVNMLVIIKNSD-EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS----- 106 (604)
Q Consensus 33 ~~~~~~~~~~~~~~-~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~----- 106 (604)
++..|+.+.+..+. ..+.+|+|+|+++++||+++|+||||||||||||+|+|+++ |++|+|.++|+++.
T Consensus 7 l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~~~~~ 81 (289)
T PRK13645 7 IILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII-----SETGQTIVGDYAIPANLKK 81 (289)
T ss_pred EEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEEccccccc
Confidence 45556655543211 11359999999999999999999999999999999999985 57999999998863
Q ss_pred ----hhccccEEEEecCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCcC
Q 046786 107 ----AEVKRRTGFVAQNNV--FYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLA-RCRNSIIGGRLVRGLS 179 (604)
Q Consensus 107 ----~~~~~~i~yv~Q~~~--l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LS 179 (604)
...++.++|++|++. +++ .|++||+.+..... ....++..++++++++.++|. +..+ +.++.||
T Consensus 82 ~~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~-----~~~~~LS 152 (289)
T PRK13645 82 IKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVK-----RSPFELS 152 (289)
T ss_pred cccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhc-----CChhhCC
Confidence 134567999999973 444 59999999865422 223444456788899999994 4555 4566999
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecCCeEE
Q 046786 180 GGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSDGSSL 258 (604)
Q Consensus 180 gGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v 258 (604)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||+++|++. .+.+.+|++++| ++|+++
T Consensus 153 ~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l-~~G~i~ 230 (289)
T PRK13645 153 GGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVM-HEGKVI 230 (289)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEE-ECCEEE
Confidence 9999999999999999999999999999999999999999999986 4899999999975 678899999999 899999
Q ss_pred EecChhhHH
Q 046786 259 YFGKGEDVI 267 (604)
Q Consensus 259 ~~G~~~~~~ 267 (604)
+.|+++++.
T Consensus 231 ~~g~~~~~~ 239 (289)
T PRK13645 231 SIGSPFEIF 239 (289)
T ss_pred EeCCHHHHh
Confidence 999988764
No 151
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.5e-42 Score=324.75 Aligned_cols=217 Identities=34% Similarity=0.509 Sum_probs=186.3
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
|++..|+++++ .+|.+|++||++++|||++||+||||||||||||.|+|-+. |++|++.+||.+++.
T Consensus 1 mi~a~nls~~~----~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~-----p~~G~v~~~g~~l~~~~~~ 71 (259)
T COG4559 1 MIRAENLSYSL----AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS-----PDSGEVTLNGVPLNSWPPE 71 (259)
T ss_pred CeeeeeeEEEe----ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC-----CCCCeEeeCCcChhhCCHH
Confidence 35666777765 45779999999999999999999999999999999999875 579999999999863
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHH
Q 046786 108 EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSL--KREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKR 185 (604)
Q Consensus 108 ~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~--~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 185 (604)
++.+.-+.+||+..+-...||+|.+.++. .|... ...+..+.+++.|...++.+.+. +....||||||||
T Consensus 72 ~lA~~raVlpQ~s~laFpFtv~eVV~mGr---~p~~~g~~~~e~~~i~~~ala~~d~~~la~-----R~y~~LSGGEqQR 143 (259)
T COG4559 72 ELARHRAVLPQNSSLAFPFTVQEVVQMGR---IPHRSGREPEEDERIAAQALAATDLSGLAG-----RDYRTLSGGEQQR 143 (259)
T ss_pred HHHHHhhhcccCcccccceEHHHHHHhcc---cccccCCCchhhHHHHHHHHHHcChhhhhc-----cchhhcCchHHHH
Confidence 45667799999988755579999999985 34322 23355567899999999988765 5677999999999
Q ss_pred HHHHHHHhh------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEE
Q 046786 186 ISIGQELLI------NPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLY 259 (604)
Q Consensus 186 vsia~~L~~------~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~ 259 (604)
|.+||.|+. ++++||||||||.||...+..++++.|+++++|..|+++.||.+ -...++|++++| ++||++.
T Consensus 144 VqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLN-LAA~YaDrivll-~~Grv~a 221 (259)
T COG4559 144 VQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLN-LAAQYADRIVLL-HQGRVIA 221 (259)
T ss_pred HHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccch-HHHHhhheeeee-eCCeEee
Confidence 999999985 34589999999999999999999999999999999999999987 567889999999 8999999
Q ss_pred ecChhhHH
Q 046786 260 FGKGEDVI 267 (604)
Q Consensus 260 ~G~~~~~~ 267 (604)
.|+|++++
T Consensus 222 ~g~p~~vl 229 (259)
T COG4559 222 SGSPQDVL 229 (259)
T ss_pred cCCHHHhc
Confidence 99999885
No 152
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-41 Score=342.69 Aligned_cols=225 Identities=23% Similarity=0.371 Sum_probs=182.1
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+.+.+ +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++....|++|+|.++|+++..
T Consensus 13 ~l~~~~l~~~~----~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 13 KIQVRNLNFYY----GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred eEEEEEEEEEe----CCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 35555655544 2346999999999999999999999999999999999987521112469999999998731
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHH
Q 046786 108 --EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKR 185 (604)
Q Consensus 108 --~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 185 (604)
..++.++|++|++.+++ .|++||+.+...... ..+.++..++++++++.+++.+...... ++.+..||||||||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qr 164 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKL-HQSGYSLSGGQQQR 164 (260)
T ss_pred hHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHH-hcCCCCCCHHHHHH
Confidence 34678999999998887 799999988654321 2334444567889999999853211111 24567999999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhh
Q 046786 186 ISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGED 265 (604)
Q Consensus 186 vsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~ 265 (604)
++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+..++|++++| ++|+++..|++++
T Consensus 165 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l-~~G~i~~~g~~~~ 241 (260)
T PRK10744 165 LCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQ-QAARCSDYTAFM-YLGELIEFGNTDT 241 (260)
T ss_pred HHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEE-ECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999964 789999999975 577889999999 8999999999876
Q ss_pred HH
Q 046786 266 VI 267 (604)
Q Consensus 266 ~~ 267 (604)
+.
T Consensus 242 ~~ 243 (260)
T PRK10744 242 IF 243 (260)
T ss_pred HH
Confidence 63
No 153
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-41 Score=334.13 Aligned_cols=193 Identities=31% Similarity=0.480 Sum_probs=167.4
Q ss_pred ceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--hccccEEEEecCCCCCCCCCHHHH
Q 046786 54 GVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--EVKRRTGFVAQNNVFYPHLTVAET 131 (604)
Q Consensus 54 ~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--~~~~~i~yv~Q~~~l~~~lTv~e~ 131 (604)
|+|+++++||+++|+|||||||||||++|+|+.+ |++|+|.++|+++.. ..++.++|++|++.+++.+|++||
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~-----~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~en 90 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET-----PQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQN 90 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHH
Confidence 9999999999999999999999999999999985 579999999998743 235679999999999999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH
Q 046786 132 LVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDST 211 (604)
Q Consensus 132 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~ 211 (604)
+.+...... .. .++..+++.++++.+||.+..++ .+.+||||||||++||++|+.+|++++|||||+|||+.
T Consensus 91 l~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~ 162 (211)
T cd03298 91 VGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKR-----LPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPA 162 (211)
T ss_pred Hhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 987643211 11 22344578899999999876664 45699999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 212 MAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 212 ~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
++..+.+.|++++++ |+|||+++|++. .+.+++|++++| ++|+++..|
T Consensus 163 ~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l-~~G~i~~~~ 211 (211)
T cd03298 163 LRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFL-DNGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEE-ECCEEeecC
Confidence 999999999999864 899999999975 577889999999 899998654
No 154
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=3.2e-41 Score=338.12 Aligned_cols=201 Identities=29% Similarity=0.474 Sum_probs=172.6
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-----hccccEEEEecCCCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-----EVKRRTGFVAQNNVF 122 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-----~~~~~i~yv~Q~~~l 122 (604)
++.+|+|+|+++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. ..++.++|++|++.+
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~ 86 (230)
T TIGR03410 12 QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP-----VKSGSIRLDGEDITKLPPHERARAGIAYVPQGREI 86 (230)
T ss_pred CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcc
Confidence 3579999999999999999999999999999999999985 579999999998742 135679999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEE
Q 046786 123 YPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLG-LARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFL 201 (604)
Q Consensus 123 ~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illL 201 (604)
++.+|++||+.+..... ... ..+.++++++.++ +.+..+ +.++.||||||||++||++|+.+|++++|
T Consensus 87 ~~~~tv~~~l~~~~~~~---~~~---~~~~~~~~l~~~~~l~~~~~-----~~~~~LS~G~~qrv~la~al~~~p~illl 155 (230)
T TIGR03410 87 FPRLTVEENLLTGLAAL---PRR---SRKIPDEIYELFPVLKEMLG-----RRGGDLSGGQQQQLAIARALVTRPKLLLL 155 (230)
T ss_pred cCCCcHHHHHHHHHHhc---Ccc---hHHHHHHHHHHHHhHHHHhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 99999999998875432 111 1234567777776 455444 45669999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhH
Q 046786 202 DEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266 (604)
Q Consensus 202 DEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~ 266 (604)
||||+|||+.++..+.+.|++++++ |+|||++||++. .+...+|+++++ ++|+++..|+++++
T Consensus 156 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l-~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 156 DEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVM-ERGRVVASGAGDEL 219 (230)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEE-ECCEEEEECCHHHc
Confidence 9999999999999999999999874 899999999975 677789999999 89999999998766
No 155
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=3.4e-41 Score=344.63 Aligned_cols=222 Identities=27% Similarity=0.469 Sum_probs=182.7
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+.+.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|..++.. +++|+|.++|+++..
T Consensus 4 ~l~~~nl~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~--~~~G~i~~~g~~~~~~~~~ 77 (262)
T PRK09984 4 IIRVEKLAKTF----NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDK--SAGSHIELLGRTVQREGRL 77 (262)
T ss_pred EEEEeeEEEEe----CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCC--CCceEEEECCEeccccccc
Confidence 35556665543 34679999999999999999999999999999999999986321 236999999988632
Q ss_pred -----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCccCCC
Q 046786 108 -----EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPN-----SLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRG 177 (604)
Q Consensus 108 -----~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 177 (604)
..++.++|++|++.+++.+||+||+.+......+. ....++..++++++++.+|+.+..|. .++.
T Consensus 78 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~ 152 (262)
T PRK09984 78 ARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ-----RVST 152 (262)
T ss_pred chhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhC-----Cccc
Confidence 23567999999999999999999998764211110 01123344578999999999876664 4569
Q ss_pred cCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecCCe
Q 046786 178 LSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSDGS 256 (604)
Q Consensus 178 LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~ 256 (604)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||++. .+...+|++++| .+|+
T Consensus 153 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~~l-~~g~ 230 (262)
T PRK09984 153 LSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIVAL-RQGH 230 (262)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE-ECCE
Confidence 999999999999999999999999999999999999999999999986 4899999999985 577899999999 8999
Q ss_pred EEEecChhhH
Q 046786 257 SLYFGKGEDV 266 (604)
Q Consensus 257 ~v~~G~~~~~ 266 (604)
+++.|++++.
T Consensus 231 i~~~g~~~~~ 240 (262)
T PRK09984 231 VFYDGSSQQF 240 (262)
T ss_pred EEEeCCHHHh
Confidence 9999987653
No 156
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-41 Score=337.74 Aligned_cols=200 Identities=31% Similarity=0.494 Sum_probs=172.8
Q ss_pred eceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--hccccEEEEecCCCCCCCCCHHH
Q 046786 53 KGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--EVKRRTGFVAQNNVFYPHLTVAE 130 (604)
Q Consensus 53 ~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--~~~~~i~yv~Q~~~l~~~lTv~e 130 (604)
.|+|+++++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++.. ..++.++|++|++.+++.+|+.|
T Consensus 16 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 90 (232)
T PRK10771 16 MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT-----PASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQ 90 (232)
T ss_pred ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCeecCcCChhhccEEEEecccccccCCcHHH
Confidence 38999999999999999999999999999999985 579999999998753 23467999999999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 046786 131 TLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDS 210 (604)
Q Consensus 131 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~ 210 (604)
|+.+...... .. .+...++++++++.+||.+..+ +.++.||||||||++||++|+.+|++++|||||+|||+
T Consensus 91 ~l~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~ 162 (232)
T PRK10771 91 NIGLGLNPGL--KL-NAAQREKLHAIARQMGIEDLLA-----RLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDP 162 (232)
T ss_pred HHhccccccc--CC-CHHHHHHHHHHHHHcCcHHHHh-----CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 9987532110 11 2234557899999999987766 44569999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 211 TMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 211 ~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
.++..+.+.|++++++ |+|||+++|++. .+.+.+|++++| ++|++++.|+++++.
T Consensus 163 ~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l-~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 163 ALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVV-ADGRIAWDGPTDELL 218 (232)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEE-ECCEEEEeCCHHHHH
Confidence 9999999999999764 899999999986 677889999999 899999999877654
No 157
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-41 Score=339.26 Aligned_cols=223 Identities=23% Similarity=0.372 Sum_probs=181.0
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~ 108 (604)
++..|+.+.+ +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++. .|++|+|.++|+++.. .
T Consensus 3 ~~~~~l~~~~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--~~~~G~i~~~g~~i~~~~~~~ 76 (246)
T PRK14269 3 AKTTNLNLFY----GKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKI--AKIDGLVEIEGKDVKNQDVVA 76 (246)
T ss_pred eeeeeeEEEE----CCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC--CCCceEEEECCEecccCCHHH
Confidence 4445555544 2356999999999999999999999999999999999987421 2579999999998742 3
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISI 188 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsi 188 (604)
.++.++|++|++.+++ .|++||+.+....+. .....+...++++++++.++|.+...... ++.++.||||||||++|
T Consensus 77 ~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~l 153 (246)
T PRK14269 77 LRKNVGMVFQQPNVFV-KSIYENISYAPKLHG-MIKNKDEEEALVVDCLQKVGLFEEVKDKL-KQNALALSGGQQQRLCI 153 (246)
T ss_pred HhhhEEEEecCCcccc-ccHHHHhhhHHhhcC-cccChHHHHHHHHHHHHHcCCChhhhHHh-cCCcccCCHHHHHHHHH
Confidence 4678999999998887 699999998754321 10112334456789999999953211111 24567999999999999
Q ss_pred HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 189 GQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 189 a~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
||+|+++|++++|||||+|||+.++..+.+.|+++++ |+|||++||++. .+...+|++++| ++|+++..|++++..
T Consensus 154 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l-~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 154 ARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFF-HLGELIEFGESKEFF 229 (246)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEE-ECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999975 899999999975 577899999999 899999999887653
No 158
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.6e-41 Score=344.77 Aligned_cols=219 Identities=24% Similarity=0.411 Sum_probs=184.2
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+.+.+... ..+.+|+|+|+++++||+++|+||||||||||+++|+|..+ |++|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~~~-~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~i~~~~~~ 77 (277)
T PRK13642 4 ILEVENLVFKYEKE-SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE-----EFEGKVKIDGELLTAENVW 77 (277)
T ss_pred eEEEEEEEEEcCCC-CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCCEEEECCEECCcCCHH
Confidence 45566666554321 23459999999999999999999999999999999999985 579999999998742
Q ss_pred hccccEEEEecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHH
Q 046786 108 EVKRRTGFVAQNNV-FYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRI 186 (604)
Q Consensus 108 ~~~~~i~yv~Q~~~-l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 186 (604)
..++.+||++|++. .++..||.||+.+..... ...+++..++++++++.+||.+..+ +.+..||||||||+
T Consensus 78 ~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv 149 (277)
T PRK13642 78 NLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKT-----REPARLSGGQKQRV 149 (277)
T ss_pred HHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhh-----CCcccCCHHHHHHH
Confidence 35678999999974 566789999998865432 2234444567899999999987666 44669999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhh
Q 046786 187 SIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGED 265 (604)
Q Consensus 187 sia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~ 265 (604)
+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++.. +. .+|++++| ++|+++..|++++
T Consensus 150 ~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~~-~~d~i~~l-~~G~i~~~g~~~~ 226 (277)
T PRK13642 150 AVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-AA-SSDRILVM-KAGEIIKEAAPSE 226 (277)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HH-hCCEEEEE-ECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999875 9999999999864 44 69999999 8999999999887
Q ss_pred HH
Q 046786 266 VI 267 (604)
Q Consensus 266 ~~ 267 (604)
+.
T Consensus 227 ~~ 228 (277)
T PRK13642 227 LF 228 (277)
T ss_pred Hh
Confidence 64
No 159
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.4e-41 Score=333.49 Aligned_cols=197 Identities=29% Similarity=0.534 Sum_probs=169.7
Q ss_pred cccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--------hccccEEEE
Q 046786 45 SDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--------EVKRRTGFV 116 (604)
Q Consensus 45 ~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--------~~~~~i~yv 116 (604)
+++++.+ |+|+++++ |+++|+|||||||||||++|+|+++ |++|+|.++|.++.. ..++.++|+
T Consensus 9 ~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~ 80 (214)
T cd03297 9 RLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK-----PDGGTIVLNGTVLFDSRKKINLPPQQRKIGLV 80 (214)
T ss_pred ecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEecccccchhhhhhHhhcEEEE
Confidence 3344545 99999999 9999999999999999999999985 579999999988631 235679999
Q ss_pred ecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCC
Q 046786 117 AQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINP 196 (604)
Q Consensus 117 ~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p 196 (604)
+|++.+++.+|++||+.+..... ......+++.++++.+|+.+..+ +.++.||||||||++||++|+.+|
T Consensus 81 ~q~~~~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~la~al~~~p 150 (214)
T cd03297 81 FQQYALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLN-----RYPAQLSGGEKQRVALARALAAQP 150 (214)
T ss_pred ecCCccCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhh-----cCcccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999998865321 23334457889999999987665 456699999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 197 SLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 197 ~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+...+|++++| ++|+++..|
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l-~~G~i~~~g 214 (214)
T cd03297 151 ELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVM-EDGRLQYIG 214 (214)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEE-ECCEEEecC
Confidence 999999999999999999999999999875 899999999975 577889999999 899998765
No 160
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-40 Score=335.15 Aligned_cols=205 Identities=33% Similarity=0.552 Sum_probs=179.3
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--hccccEEEEecCCCCCCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--EVKRRTGFVAQNNVFYPH 125 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--~~~~~i~yv~Q~~~l~~~ 125 (604)
.+.+++|+|+++++||+++|+||||||||||+++|+|.++ |++|+|.++|+++.. ..++.++|++|++.+++.
T Consensus 12 ~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~ 86 (232)
T cd03300 12 GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET-----PTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPH 86 (232)
T ss_pred CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEcCcCChhhcceEEEecccccCCC
Confidence 3569999999999999999999999999999999999986 568999999998753 235689999999999989
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 046786 126 LTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPT 205 (604)
Q Consensus 126 lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPt 205 (604)
+|++||+.+....+ ........++++++++.+|+.+..+ +.+..||||||||++||++|+.+|++++|||||
T Consensus 87 ~t~~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~lS~G~~qrl~laral~~~p~llllDEP~ 158 (232)
T cd03300 87 LTVFENIAFGLRLK---KLPKAEIKERVAEALDLVQLEGYAN-----RKPSQLSGGQQQRVAIARALVNEPKVLLLDEPL 158 (232)
T ss_pred CcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhc-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999998876543 1233444557889999999987766 445699999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 206 SGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 206 sgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++| ++|++++.|+.++..
T Consensus 159 ~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l-~~G~~~~~~~~~~~~ 219 (232)
T cd03300 159 GALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVM-NKGKIQQIGTPEEIY 219 (232)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEE-ECCEEEecCCHHHHH
Confidence 999999999999999999874 899999999975 578899999999 899999999876553
No 161
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-40 Score=342.08 Aligned_cols=225 Identities=21% Similarity=0.332 Sum_probs=184.3
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+.+.+ +++.+|+|+|+++++||+++|+||||||||||||+|+|++++....|++|+|.++|+++..
T Consensus 20 ~l~~~nl~~~~----~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 20 ALSTKDLHVYY----GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred EEEEeeEEEEE----CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 45666665544 3467999999999999999999999999999999999987531112579999999998742
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHH
Q 046786 108 --EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKR 185 (604)
Q Consensus 108 --~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 185 (604)
..++.++|++|++.+++ .||+||+.++.... + ...+++..+++.++++.++|.+..+... ++.++.||||||||
T Consensus 96 ~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~G~~qr 171 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFA-KSIYENITFALERA-G-VKDKKVLDEIVETSLKQAALWDQVKDDL-HKSALTLSGGQQQR 171 (267)
T ss_pred hHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc-C-CCCHHHHHHHHHHHHHHcCCCchhhhhh-cCCcccCCHHHHHH
Confidence 34668999999988887 59999999865432 1 1233444567888999999964322222 25678999999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhh
Q 046786 186 ISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGED 265 (604)
Q Consensus 186 vsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~ 265 (604)
++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||+++|++. .+.+++|++++| ++|+++..|++++
T Consensus 172 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l-~~G~i~~~g~~~~ 248 (267)
T PRK14237 172 LCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNMQ-QAARASDYTAFF-YLGDLIEYDKTRN 248 (267)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhcCEEEEE-ECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999964 799999999986 677899999999 8999999999887
Q ss_pred HH
Q 046786 266 VI 267 (604)
Q Consensus 266 ~~ 267 (604)
+.
T Consensus 249 ~~ 250 (267)
T PRK14237 249 IF 250 (267)
T ss_pred Hh
Confidence 63
No 162
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=8.8e-42 Score=313.91 Aligned_cols=211 Identities=31% Similarity=0.477 Sum_probs=183.5
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-----
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----- 107 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----- 107 (604)
++..++...+....+...||++|++.+++||-+||+|||||||||||-+++|+.. |++|+|.+.|+++..
T Consensus 7 i~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~-----~ssGeV~l~G~~L~~ldEd~ 81 (228)
T COG4181 7 IEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD-----PSSGEVRLLGQPLHKLDEDA 81 (228)
T ss_pred eehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC-----CCCceEEEcCcchhhcCHHH
Confidence 4444555555566667789999999999999999999999999999999999975 679999999999842
Q ss_pred --hc-cccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHH
Q 046786 108 --EV-KRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERK 184 (604)
Q Consensus 108 --~~-~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 184 (604)
.+ .+++|+|+|...+.|+||..||+...+.++.. +..+....+.++|+.+||.+..+ .++.+|||||+|
T Consensus 82 rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge---~~~~~~~~A~~lL~~vGLg~Rl~-----HyP~qLSGGEQQ 153 (228)
T COG4181 82 RAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE---SSADSRAGAKALLEAVGLGKRLT-----HYPAQLSGGEQQ 153 (228)
T ss_pred HHHhhccceeEEEEeeeccccchhhhhccchhhhcCC---ccccHHHHHHHHHHHhCcccccc-----cCccccCchHHH
Confidence 23 36899999999999999999999999887632 23344557889999999998766 457799999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecCCeEEE
Q 046786 185 RISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSDGSSLY 259 (604)
Q Consensus 185 Rvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~ 259 (604)
||+||||++..|+|||.||||-+||..+...|.+++-.+.+ .|.|.|++||||. +...|||.+-| ..|+++.
T Consensus 154 RVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~-~~G~l~~ 226 (228)
T COG4181 154 RVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRL-RSGRLVE 226 (228)
T ss_pred HHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeee-ecceecc
Confidence 99999999999999999999999999999999999999975 5999999999985 67889999999 8999874
No 163
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=9.2e-41 Score=336.51 Aligned_cols=205 Identities=30% Similarity=0.506 Sum_probs=179.4
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--hccccEEEEecCCCCCCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--EVKRRTGFVAQNNVFYPH 125 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--~~~~~i~yv~Q~~~l~~~ 125 (604)
++.+|+|+|+++++||+++|+||||||||||+++|+|.++ |++|+|.++|.++.. ..++.++|++|++.+++.
T Consensus 12 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~ 86 (237)
T TIGR00968 12 SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ-----PDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKH 86 (237)
T ss_pred CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEcCcCChhhcCEEEEecChhhccC
Confidence 3569999999999999999999999999999999999875 569999999998753 345679999999999999
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 046786 126 LTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPT 205 (604)
Q Consensus 126 lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPt 205 (604)
+|+.||+.+....+ ........+.++++++.+++.+..+ +.++.|||||+||++||++|+.+|++++|||||
T Consensus 87 ~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~lS~G~~qrl~laral~~~p~llllDEP~ 158 (237)
T TIGR00968 87 LTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGD-----RYPNQLSGGQRQRVALARALAVEPQVLLLDEPF 158 (237)
T ss_pred CcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999999875432 1233344467789999999987666 445699999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 206 SGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 206 sgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
+|||+.+...+.+.|++++++ |+|||++||++. .+.+.+|++++| ++|++++.|+.++..
T Consensus 159 ~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l-~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 159 GALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVM-SNGKIEQIGSPDEVY 219 (237)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEE-ECCEEEEecCHHHHH
Confidence 999999999999999999876 899999999985 678899999999 899999999987764
No 164
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-41 Score=339.23 Aligned_cols=211 Identities=29% Similarity=0.440 Sum_probs=178.2
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~ 108 (604)
++..|+.+.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++.. .
T Consensus 4 l~~~~l~~~~----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~~~~~~ 74 (241)
T PRK14250 4 IEFKEVSYSS----FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID-----PTEGSILIDGVDIKTIDVID 74 (241)
T ss_pred EEEEeEEEEe----CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEEhhhcChHH
Confidence 4445555443 34569999999999999999999999999999999999885 579999999998742 3
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCcCHHHHHHHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLA-RCRNSIIGGRLVRGLSGGERKRIS 187 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRvs 187 (604)
.++.++|++|++.+++ .||+||+.+....+ . . ..+++.++++.+||. +..+ +.+..||||||||++
T Consensus 75 ~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~-----~~~~~LS~G~~qrl~ 141 (241)
T PRK14250 75 LRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G--E--KNVDVEYYLSIVGLNKEYAT-----RDVKNLSGGEAQRVS 141 (241)
T ss_pred hhhcEEEEecCchhch-hhHHHHHhcchhhc---C--c--HHHHHHHHHHHcCCCHHHhh-----CCcccCCHHHHHHHH
Confidence 4668999999998887 69999998754321 1 1 124678899999996 4444 456799999999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhH
Q 046786 188 IGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266 (604)
Q Consensus 188 ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~ 266 (604)
||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.+.+|++++| ++|+++..|+++++
T Consensus 142 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l-~~G~i~~~~~~~~~ 219 (241)
T PRK14250 142 IARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFL-NKGILVEYAKTYDF 219 (241)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEE-eCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999874 999999999976 577889999999 89999999988765
Q ss_pred H
Q 046786 267 I 267 (604)
Q Consensus 267 ~ 267 (604)
.
T Consensus 220 ~ 220 (241)
T PRK14250 220 F 220 (241)
T ss_pred h
Confidence 3
No 165
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-40 Score=340.17 Aligned_cols=225 Identities=23% Similarity=0.388 Sum_probs=182.1
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+.+.+ +++.+|+|+|+++++||+++|+|||||||||||++|+|+.++....+++|+|.++|+++..
T Consensus 12 ~l~i~~l~~~~----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~ 87 (259)
T PRK14274 12 VYQINGMNLWY----GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87 (259)
T ss_pred eEEEeeEEEEE----CCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccC
Confidence 45666665543 2356999999999999999999999999999999999987520001258999999998741
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHH
Q 046786 108 --EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKR 185 (604)
Q Consensus 108 --~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 185 (604)
..++.++|++|++.+++. ||+||+.+..... ....+++..++++++++.+++.+...... ++.+++||||||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LS~Gq~qr 163 (259)
T PRK14274 88 LVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIH--GTKNKKKLQEIVEKSLKDVALWDEVKDRL-HTQALSLSGGQQQR 163 (259)
T ss_pred HHHHhhceEEEecCCccccc-CHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhhhh-hCCcccCCHHHHHH
Confidence 345689999999988885 9999998865432 11123444556888999999864211111 25577999999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhh
Q 046786 186 ISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGED 265 (604)
Q Consensus 186 vsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~ 265 (604)
++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.+|++++| ++|+++..|++++
T Consensus 164 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l-~~G~i~~~g~~~~ 240 (259)
T PRK14274 164 LCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFF-YMGELVECNDTNK 240 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEE-ECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999975 799999999975 677899999999 8999999999887
Q ss_pred HH
Q 046786 266 VI 267 (604)
Q Consensus 266 ~~ 267 (604)
+.
T Consensus 241 ~~ 242 (259)
T PRK14274 241 MF 242 (259)
T ss_pred Hh
Confidence 63
No 166
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=5e-41 Score=336.90 Aligned_cols=206 Identities=26% Similarity=0.386 Sum_probs=173.8
Q ss_pred eeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-hc-cccEEEEecCCC--CCCCC
Q 046786 51 ILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-EV-KRRTGFVAQNNV--FYPHL 126 (604)
Q Consensus 51 iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-~~-~~~i~yv~Q~~~--l~~~l 126 (604)
+|+|+|+++++||+++|+||||||||||+|+|+|+.++. ..+++|+|.++|+++.. .. ++.++|++|++. +.+.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 79 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPG-LTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLF 79 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCc-cCccccEEEECCEechhhhhhhheeEEEecCchhhcCccc
Confidence 589999999999999999999999999999999998621 01279999999998754 22 357999999984 56778
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc---cccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeC
Q 046786 127 TVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLAR---CRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDE 203 (604)
Q Consensus 127 Tv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDE 203 (604)
|+.|++.+...... ...++..+++.++++.+|+.+ ..+ +.++.|||||||||+||++|+.+|++++|||
T Consensus 80 t~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~~~LS~G~~qrv~laral~~~p~vllLDE 151 (230)
T TIGR02770 80 TMGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPEEVLK-----KYPFQLSGGMLQRVMIALALLLEPPFLIADE 151 (230)
T ss_pred CHHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchHHHHh-----CChhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999987654321 122334567899999999973 333 4567999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 204 PTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 204 PtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
||+|||+.+...+.+.|++++++ |+|||+++|++. ++...+|++++| ++|+++..|+++++.
T Consensus 152 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l-~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 152 PTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVM-DDGRIVERGTVKEIF 214 (230)
T ss_pred CccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE-ECCEEEEeCCHHHHH
Confidence 99999999999999999999874 899999999986 677899999999 899999999887764
No 167
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=7.9e-41 Score=331.54 Aligned_cols=197 Identities=29% Similarity=0.457 Sum_probs=170.9
Q ss_pred eeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--hccccEEEEecCCCCCCCCCH
Q 046786 51 ILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--EVKRRTGFVAQNNVFYPHLTV 128 (604)
Q Consensus 51 iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--~~~~~i~yv~Q~~~l~~~lTv 128 (604)
+++|+|+++++||+++|+||||||||||+|+|+|..+ |++|+|.++|+++.. ..++.++|++|++.+++.+|+
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~ 87 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE-----PASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTV 87 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEcccCChhccceEEEeccCccCCCCcH
Confidence 4689999999999999999999999999999999985 579999999998743 356789999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 046786 129 AETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGL 208 (604)
Q Consensus 129 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgL 208 (604)
.||+.+...... . ...+..++++++++.+||.+..+ +.++.||||||||++||++|+.+|++++|||||+||
T Consensus 88 ~en~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~L 159 (213)
T TIGR01277 88 RQNIGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLD-----RLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSAL 159 (213)
T ss_pred HHHHHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhh-----CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccC
Confidence 999987643211 1 11223456788999999987666 456799999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecC
Q 046786 209 DSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGK 262 (604)
Q Consensus 209 D~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~ 262 (604)
|+.++..+.+.|++++++ |+|||+++|++. .+.+.+|++++| ++|+++..|+
T Consensus 160 D~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l-~~g~i~~~~~ 212 (213)
T TIGR01277 160 DPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVV-SQGKIKVVSD 212 (213)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEE-ECCeEEEecC
Confidence 999999999999999864 899999999975 567889999999 8999998875
No 168
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-40 Score=335.00 Aligned_cols=202 Identities=33% Similarity=0.556 Sum_probs=177.8
Q ss_pred eeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--hccccEEEEecCCCCCCCCCH
Q 046786 51 ILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--EVKRRTGFVAQNNVFYPHLTV 128 (604)
Q Consensus 51 iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--~~~~~i~yv~Q~~~l~~~lTv 128 (604)
+|+|+|+++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. ..++.++|++|++.+++.+|+
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~-----p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 88 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK-----PDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTV 88 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccH
Confidence 8999999999999999999999999999999999985 679999999998753 235689999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 046786 129 AETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGL 208 (604)
Q Consensus 129 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgL 208 (604)
.||+.+..... ..+..+..+.+.++++.+||.+..++ .++.||||||||++||++|+.+|++++|||||+||
T Consensus 89 ~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~laral~~~p~llllDEPt~gL 160 (235)
T cd03299 89 YKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNR-----KPETLSGGEQQRVAIARALVVNPKILLLDEPFSAL 160 (235)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhc-----CcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccC
Confidence 99998865332 22344555678899999999877664 45699999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 209 DSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 209 D~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
|+.++..+.+.|++++++ |+|||+++|++. .+.+.+|++++| ++|+++..|++++..
T Consensus 161 D~~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l-~~G~i~~~~~~~~~~ 218 (235)
T cd03299 161 DVRTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIM-LNGKLIQVGKPEEVF 218 (235)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEE-ECCEEEEecCHHHHH
Confidence 999999999999999865 999999999985 577889999999 899999999877653
No 169
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-40 Score=337.95 Aligned_cols=224 Identities=23% Similarity=0.374 Sum_probs=181.3
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-----
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----- 107 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----- 107 (604)
++..|+.+.+ +++.+|+|+|+++++||+++|+|||||||||||++|+|+.++....+++|+|.++|+++..
T Consensus 5 l~~~~l~~~~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 5 MESKNLNLWY----GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEeEEEE----CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 4555655443 2356999999999999999999999999999999999987531111368999999998742
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHH
Q 046786 108 -EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRI 186 (604)
Q Consensus 108 -~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 186 (604)
..++.++|++|++.+++ +|++||+.+...... ....++..++++++++.+|+.+...... ++.++.||||||||+
T Consensus 81 ~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv 156 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDDL-KKSALKLSGGQQQRL 156 (251)
T ss_pred HHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhHh-hCCcccCCHHHHHHH
Confidence 34567999999998887 899999998754321 1123344556788999998853111111 245779999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhH
Q 046786 187 SIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266 (604)
Q Consensus 187 sia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~ 266 (604)
+||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.+|++++| ++|++++.|+++++
T Consensus 157 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l-~~G~i~~~~~~~~~ 233 (251)
T PRK14270 157 CIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFF-LMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEE-ECCeEEEeCCHHHH
Confidence 999999999999999999999999999999999999976 689999999975 678899999999 89999999998876
Q ss_pred H
Q 046786 267 I 267 (604)
Q Consensus 267 ~ 267 (604)
.
T Consensus 234 ~ 234 (251)
T PRK14270 234 F 234 (251)
T ss_pred h
Confidence 3
No 170
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-40 Score=337.51 Aligned_cols=225 Identities=25% Similarity=0.417 Sum_probs=182.3
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+++.+ +++.+|+|+|+++++||+++|+|||||||||||++|+|+.++....|++|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~----~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~ 78 (250)
T PRK14262 3 IIEIENFSAYY----GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLD 78 (250)
T ss_pred eEEEEeeEEEe----CCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhh
Confidence 34555655543 2356999999999999999999999999999999999987521101368999999998742
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHH
Q 046786 108 --EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKR 185 (604)
Q Consensus 108 --~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 185 (604)
..++.++|++|++.+++ .|++||+.+...... ...++...+.+++.++.+|+.+..+.. .++.+++||||||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~Gq~qr 154 (250)
T PRK14262 79 VTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSE-LNKPGTRLSGGQQQR 154 (250)
T ss_pred HHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHH-HhCChhhcCHHHHHH
Confidence 34568999999998887 899999998754321 112333445678899999986422111 235677999999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhh
Q 046786 186 ISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGED 265 (604)
Q Consensus 186 vsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~ 265 (604)
++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. .+...+|++++| ++|+++..|++++
T Consensus 155 ~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l-~~G~i~~~g~~~~ 231 (250)
T PRK14262 155 LCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFM-YRGELIEYGPTRE 231 (250)
T ss_pred HHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEE-ECCEEEEecCHHH
Confidence 9999999999999999999999999999999999999975 799999999975 577889999999 8999999999887
Q ss_pred HH
Q 046786 266 VI 267 (604)
Q Consensus 266 ~~ 267 (604)
+.
T Consensus 232 ~~ 233 (250)
T PRK14262 232 IV 233 (250)
T ss_pred HH
Confidence 64
No 171
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.6e-41 Score=339.15 Aligned_cols=213 Identities=21% Similarity=0.371 Sum_probs=175.2
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh------hccccEEEEecCCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA------EVKRRTGFVAQNNV 121 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~------~~~~~i~yv~Q~~~ 121 (604)
++.+|+|+||++++||+++|+||||||||||+++|+|+.++....|++|+|.++|+++.. ..++.++|++|++.
T Consensus 17 ~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 96 (251)
T PRK14244 17 SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPN 96 (251)
T ss_pred CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcc
Confidence 457999999999999999999999999999999999987421101468999999998632 24668999999998
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEE
Q 046786 122 FYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFL 201 (604)
Q Consensus 122 l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illL 201 (604)
+++. |++||+.+....+ ......++..+.+.++++.+||.+...+.. ++.+++||||||||++||++|+.+|++|+|
T Consensus 97 ~~~~-tv~~ni~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qrv~laral~~~p~llll 173 (251)
T PRK14244 97 PFPK-SIYDNVAYGPKLH-GLAKNKKKLDEIVEKSLTSVGLWEELGDRL-KDSAFELSGGQQQRLCIARAIAVKPTMLLM 173 (251)
T ss_pred cccC-CHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHcCCCchhhhHh-hcChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 8886 9999998864332 111123334456788999999975322222 245679999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhH
Q 046786 202 DEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266 (604)
Q Consensus 202 DEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~ 266 (604)
||||+|||+.++..+.+.|+++++ |+|||+++|++. .+.+.+|++++| ++|++++.|+++++
T Consensus 174 DEPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l-~~G~i~~~~~~~~~ 235 (251)
T PRK14244 174 DEPCSALDPVATNVIENLIQELKK-NFTIIVVTHSMK-QAKKVSDRVAFF-QSGRIVEYNTTQEI 235 (251)
T ss_pred eCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHhhcCEEEEE-ECCEEEEeCCHHHH
Confidence 999999999999999999999964 899999999976 677889999999 89999999988765
No 172
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.3e-41 Score=328.81 Aligned_cols=195 Identities=36% Similarity=0.613 Sum_probs=167.0
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh---hc
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---EV 109 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---~~ 109 (604)
+.+.|+++.+.+.++++.+|+|+|+++++||+++|+|||||||||||++|+|+.++. .|++|+|.++|+++.. ..
T Consensus 4 ~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~~~~G~i~i~g~~~~~~~~~~ 81 (202)
T cd03233 4 LSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGN--VSVEGDIHYNGIPYKEFAEKY 81 (202)
T ss_pred EEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCC--CCcceEEEECCEECccchhhh
Confidence 566777777766556678999999999999999999999999999999999998632 1579999999998753 35
Q ss_pred cccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHH
Q 046786 110 KRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIG 189 (604)
Q Consensus 110 ~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia 189 (604)
++.++|++|++.+++.+||+||+.+..... . ++.+..||||||||++||
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~-----~~~~~~LS~Ge~qrl~la 130 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------G-----NEFVRGISGGERKRVSIA 130 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------c-----ccchhhCCHHHHHHHHHH
Confidence 678999999999999999999998764210 1 244669999999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 190 QELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 190 ~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
++|+.+|++++|||||+|||+.++..+.+.|++++++ +.|+|+++|+...++.+.+|++++| ++|++++.|
T Consensus 131 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l-~~G~i~~~g 202 (202)
T cd03233 131 EALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVL-YEGRQIYYG 202 (202)
T ss_pred HHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEE-ECCEEEecC
Confidence 9999999999999999999999999999999999875 6787777776556788899999999 899998765
No 173
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-40 Score=336.96 Aligned_cols=226 Identities=26% Similarity=0.391 Sum_probs=180.8
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+.+.+ +++.+|+|+|+++++||+++|+||||||||||+|+|+|++++.....++|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (252)
T PRK14272 4 LLSAQDVNIYY----GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79 (252)
T ss_pred EEEEeeeEEEE----CCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccC
Confidence 34555655544 2457999999999999999999999999999999999997531100148999999998742
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHH
Q 046786 108 --EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKR 185 (604)
Q Consensus 108 --~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 185 (604)
..++.++|++|++.+++.+|+.||+.+..... ....+++..+.++++++.+++.+..... -++.++.||||||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G~~qr 156 (252)
T PRK14272 80 PVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLA--GIRDRDHLMEVAERSLRGAALWDEVKDR-LKTPATGLSGGQQQR 156 (252)
T ss_pred HHHhhceeEEEeccCccCcCCCHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCcchhhhhh-hcCCcccCCHHHHHH
Confidence 34567999999999999999999998765432 1112333445677788888764311111 124567999999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhh
Q 046786 186 ISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGED 265 (604)
Q Consensus 186 vsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~ 265 (604)
++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+...+|++++| ++|++++.|++++
T Consensus 157 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l-~~G~i~~~~~~~~ 233 (252)
T PRK14272 157 LCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFF-LVGDLVEHGPTDQ 233 (252)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEE-ECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999975 799999999986 677889999999 8999999999887
Q ss_pred HH
Q 046786 266 VI 267 (604)
Q Consensus 266 ~~ 267 (604)
+.
T Consensus 234 ~~ 235 (252)
T PRK14272 234 LF 235 (252)
T ss_pred HH
Confidence 64
No 174
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=8.8e-41 Score=361.52 Aligned_cols=231 Identities=29% Similarity=0.437 Sum_probs=200.9
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCC---h-
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS---A- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~---~- 107 (604)
+++..|+.+.+....+...+++||||++++||++||+|.|||||||+.++|.|+++.+. ..++|+|.++|+++. .
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~-~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGG-RITSGEVILDGRDLLGLSER 83 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCC-cccceEEEECCcchhcCCHH
Confidence 56777888877665444679999999999999999999999999999999999997543 346899999999763 1
Q ss_pred ---h-ccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHH
Q 046786 108 ---E-VKRRTGFVAQNN--VFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGG 181 (604)
Q Consensus 108 ---~-~~~~i~yv~Q~~--~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 181 (604)
. ..+.|+||||++ .+.|-+|+.+-+.-....+. ..+.++.++++.++|+++||.+.... ++++++||||
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~--~~~~~ea~~~a~elL~~Vgl~~~~~~---~~yPheLSGG 158 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHG--KGSRAEARKRAVELLEQVGLPDPERR---DRYPHQLSGG 158 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHcCCCChhhh---ccCCcccCch
Confidence 1 236799999997 47788999999987766653 23477888899999999999987653 5789999999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEe
Q 046786 182 ERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYF 260 (604)
Q Consensus 182 erqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~ 260 (604)
|||||.||+||+.+|++|++||||++||+.++.+|+++|+++.+ .|.++|++|||+. .+.+++|++++| ++|+++..
T Consensus 159 ~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~-Vva~~aDrv~Vm-~~G~iVE~ 236 (539)
T COG1123 159 MRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG-VVAELADRVVVM-YKGEIVET 236 (539)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH-HHHHhcCeEEEE-ECCEEEEe
Confidence 99999999999999999999999999999999999999999985 5999999999986 789999999999 99999999
Q ss_pred cChhhHHHHH
Q 046786 261 GKGEDVINYF 270 (604)
Q Consensus 261 G~~~~~~~~f 270 (604)
|+++++.+-+
T Consensus 237 G~~~~i~~~p 246 (539)
T COG1123 237 GPTEEILSNP 246 (539)
T ss_pred cCHHHHHhcc
Confidence 9999997643
No 175
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-40 Score=340.12 Aligned_cols=227 Identities=22% Similarity=0.366 Sum_probs=181.2
Q ss_pred hhhheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--
Q 046786 30 EDMLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-- 107 (604)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-- 107 (604)
+.+++..|+++.+ +++.+|+|+|+++++||+++|+||||||||||||+|+|+.+.....|++|+|.++|+++..
T Consensus 19 ~~~l~~~~l~~~~----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 94 (268)
T PRK14248 19 EHILEVKDLSIYY----GEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSN 94 (268)
T ss_pred CceEEEEEEEEEe----CCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccc
Confidence 3456666766554 2456999999999999999999999999999999999975310001479999999998742
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHH
Q 046786 108 ----EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGER 183 (604)
Q Consensus 108 ----~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 183 (604)
..++.++|++|++.+++. |++||+.+...... ........+.+.+.++.+++.+..... -++.++.||||||
T Consensus 95 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgGq~ 170 (268)
T PRK14248 95 INVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDR-LHSSALSLSGGQQ 170 (268)
T ss_pred ccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHH-HhcCcccCCHHHH
Confidence 345679999999988885 99999998653221 112223345677889999885321111 1255679999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecCh
Q 046786 184 KRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKG 263 (604)
Q Consensus 184 qRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~ 263 (604)
||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.+|++++| ++|++++.|++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l-~~G~i~~~~~~ 247 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFF-LNGDLVEYDQT 247 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEE-ECCEEEEeCCH
Confidence 999999999999999999999999999999999999999975 689999999975 577899999999 89999999988
Q ss_pred hhHH
Q 046786 264 EDVI 267 (604)
Q Consensus 264 ~~~~ 267 (604)
+++.
T Consensus 248 ~~~~ 251 (268)
T PRK14248 248 EQIF 251 (268)
T ss_pred HHHH
Confidence 7653
No 176
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-40 Score=336.70 Aligned_cols=223 Identities=22% Similarity=0.355 Sum_probs=180.4
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-----
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----- 107 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----- 107 (604)
++..|+.+.+ +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++....+++|+|.++|.++..
T Consensus 4 l~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 4 FNIENLDLFY----GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred EEEeccEEEE----CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4455555443 2456999999999999999999999999999999999987632112468999999988731
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHH
Q 046786 108 EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRIS 187 (604)
Q Consensus 108 ~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvs 187 (604)
..++.++|++|++.+++ .||.||+.+..... ....++...+++.+.++.+++.+...... ++.+.+|||||||||+
T Consensus 80 ~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~ 155 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQ--GIKDKKVLDEVVERSLRGAALWDEVKDRL-KSHAFGLSGGQQQRLC 155 (249)
T ss_pred HHHhheeEEecCCCcCc-ccHHHHHHhHHHhc--CCCchHHHHHHHHHHHHHcCCchhhhHHh-hcCcccCCHHHHHHHH
Confidence 34678999999999887 79999998865332 11123334456788889888854221111 2456799999999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhH
Q 046786 188 IGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266 (604)
Q Consensus 188 ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~ 266 (604)
||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+...+|++++| ++|+++..|+++++
T Consensus 156 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l-~~G~i~~~g~~~~~ 231 (249)
T PRK14253 156 IARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFF-LMGELVEHDDTQVI 231 (249)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEE-ECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999976 589999999975 678889999999 89999999988765
No 177
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=9.8e-41 Score=342.71 Aligned_cols=223 Identities=28% Similarity=0.400 Sum_probs=180.2
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCC---CCccccEEEECCEeCCh--
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGK---DTVTQGHITYNGKQFSA-- 107 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~---~~~~~G~I~~~G~~~~~-- 107 (604)
++..|+++.+ +++.+|+|+|+++++||+++|+||||||||||||+|+|++++.. ...++|+|.++|+++..
T Consensus 2 l~~~nl~~~~----~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~ 77 (272)
T PRK13547 2 LTADHLHVAR----RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAID 77 (272)
T ss_pred eEEEEEEEEE----CCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCC
Confidence 4455655543 34569999999999999999999999999999999999986310 00018999999998742
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHH
Q 046786 108 --EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLP-NSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERK 184 (604)
Q Consensus 108 --~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 184 (604)
..++.++|++|++.+++.+||+||+.+....... .....++..+++.++++.+|+.+..+ +.++.|||||||
T Consensus 78 ~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~q 152 (272)
T PRK13547 78 APRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVG-----RDVTTLSGGELA 152 (272)
T ss_pred HHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhc-----CCcccCCHHHHH
Confidence 3456789999998766678999999875321110 01111234456889999999987655 456699999999
Q ss_pred HHHHHHHHh---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecC
Q 046786 185 RISIGQELL---------INPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSD 254 (604)
Q Consensus 185 Rvsia~~L~---------~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~ 254 (604)
||+||++|+ .+|++|+|||||+|||+.+...+.+.|++++++ |+|||+++|++. .+...+|++++| ++
T Consensus 153 rv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~d~i~~l-~~ 230 (272)
T PRK13547 153 RVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHADRIAML-AD 230 (272)
T ss_pred HHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEE-EC
Confidence 999999999 599999999999999999999999999999876 899999999986 577899999999 89
Q ss_pred CeEEEecChhhH
Q 046786 255 GSSLYFGKGEDV 266 (604)
Q Consensus 255 G~~v~~G~~~~~ 266 (604)
|++++.|+++++
T Consensus 231 G~i~~~g~~~~~ 242 (272)
T PRK13547 231 GAIVAHGAPADV 242 (272)
T ss_pred CeEEEecCHHHH
Confidence 999999998766
No 178
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-40 Score=335.82 Aligned_cols=223 Identities=22% Similarity=0.381 Sum_probs=179.7
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-----
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----- 107 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----- 107 (604)
++..|+.+.+ +++.+|+|+|+++++||+++|+|||||||||||++|+|+.++....+++|+|.++|+++..
T Consensus 4 l~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 4 ISVKDLDLFY----GDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred EEEEEEEEEE----CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 4445555443 2356999999999999999999999999999999999986421101268999999998742
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHH
Q 046786 108 -EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRI 186 (604)
Q Consensus 108 -~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 186 (604)
..++.++|++|++.+++ +|++||+.+....+. ....++.+++++++++.+++.+...... ++.+++||||||||+
T Consensus 80 ~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~qrv 155 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRL-KKSALGLSGGQQQRL 155 (250)
T ss_pred HHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHH-hcCCCCCCHHHHHHH
Confidence 34668999999998887 899999998754321 1123344567888899998753211111 245679999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhH
Q 046786 187 SIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266 (604)
Q Consensus 187 sia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~ 266 (604)
+||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. .+...+|++++| ++|+++..|+++++
T Consensus 156 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l-~~G~i~~~~~~~~~ 232 (250)
T PRK14240 156 CIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTAFF-LNGEIVEFGDTVDL 232 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEE-ECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999965 799999999975 678899999999 89999999988765
No 179
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-41 Score=373.13 Aligned_cols=221 Identities=23% Similarity=0.346 Sum_probs=186.5
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+++.+ +++.+|+|+|+++++||+++|+||||||||||||+|+|+.+++ |++|+|.++|+++..
T Consensus 5 ~l~~~nl~~~~----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~~~G~i~~~g~~~~~~~~~ 77 (506)
T PRK13549 5 LLEMKNITKTF----GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG---TYEGEIIFEGEELQASNIR 77 (506)
T ss_pred eEEEeeeEEEe----CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CCCeEEEECCEECCCCCHH
Confidence 46666766544 3456999999999999999999999999999999999998631 369999999998742
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHH
Q 046786 108 -EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRI 186 (604)
Q Consensus 108 -~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 186 (604)
..++.+|||+|++.+++.+||+||+.++...+.....+.++..++++++++.+|+.+..+. .+++|||||||||
T Consensus 78 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgGqkqrv 152 (506)
T PRK13549 78 DTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPAT-----PVGNLGLGQQQLV 152 (506)
T ss_pred HHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCccc-----chhhCCHHHHHHH
Confidence 1346799999999999999999999887543211112334445678999999999877664 4569999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhH
Q 046786 187 SIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266 (604)
Q Consensus 187 sia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~ 266 (604)
+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+...+|++++| ++|++++.|+++++
T Consensus 153 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l-~~G~i~~~~~~~~~ 230 (506)
T PRK13549 153 EIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVI-RDGRHIGTRPAAGM 230 (506)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEE-ECCEEeeecccccC
Confidence 9999999999999999999999999999999999999888999999999975 677889999999 89999999987765
No 180
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-40 Score=336.38 Aligned_cols=225 Identities=25% Similarity=0.405 Sum_probs=180.0
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+.+.+ +++.+|+|+|+++++||+++|+|||||||||||++|+|+.+.....+++|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~----~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~ 80 (252)
T PRK14239 5 ILQVSDLSVYY----NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80 (252)
T ss_pred eEEEEeeEEEE----CCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccc
Confidence 35555655544 2356999999999999999999999999999999999985310000248999999998731
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHH
Q 046786 108 --EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKR 185 (604)
Q Consensus 108 --~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 185 (604)
.+++.++||+|++.+++ .||+||+.+....+ + ....+...+++.++++.+++.+...+.. ++.++.||||||||
T Consensus 81 ~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qr 156 (252)
T PRK14239 81 TVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLK-G-IKDKQVLDEAVEKSLKGASIWDEVKDRL-HDSALGLSGGQQQR 156 (252)
T ss_pred hHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHc-C-CCcHHHHHHHHHHHHHHcCCchhHHHHH-hcCcccCCHHHHHH
Confidence 34667999999998887 79999999875432 1 1123334456788999999853211111 25677999999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhh
Q 046786 186 ISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGED 265 (604)
Q Consensus 186 vsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~ 265 (604)
++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+...+|++++| ++|++++.|++++
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l-~~G~i~~~g~~~~ 233 (252)
T PRK14239 157 VCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFF-LDGDLIEYNDTKQ 233 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEE-ECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999975 689999999975 678899999999 8999999999887
Q ss_pred HH
Q 046786 266 VI 267 (604)
Q Consensus 266 ~~ 267 (604)
+.
T Consensus 234 ~~ 235 (252)
T PRK14239 234 MF 235 (252)
T ss_pred HH
Confidence 63
No 181
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-40 Score=340.87 Aligned_cols=224 Identities=23% Similarity=0.384 Sum_probs=180.5
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCC-----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS----- 106 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~----- 106 (604)
+++..|+.+.+ +++.+|+|+|+++++||+++|+|||||||||||++|+|+.++....|++|+|.++|+++.
T Consensus 13 ~l~i~nl~~~~----~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 13 IISLQNVTISY----GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred eEEEEeEEEEE----CCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 46666665544 235699999999999999999999999999999999998752111157999999999863
Q ss_pred -hhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHH
Q 046786 107 -AEVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKR 185 (604)
Q Consensus 107 -~~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 185 (604)
...++.++|++|++.+++. ||+||+.+.+..+ .... +..+++.++++.+++....... -++.+..||||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~---~~~~-~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G~~qr 162 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPK-SIYENIAFGARIN---GYTG-DMDELVERSLRKAAVWDECKDK-LNESGYSLSGGQQQR 162 (269)
T ss_pred HHHHhhceEEEccCCccchh-hHHHHHhhhhhhc---CCcH-HHHHHHHHHHHHhCCcchhhhh-hCCCcccCCHHHHHH
Confidence 1345679999999988884 9999999876432 1122 2345677888988874321111 125567999999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecC-----------
Q 046786 186 ISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSD----------- 254 (604)
Q Consensus 186 vsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~----------- 254 (604)
++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+..++|++++| ++
T Consensus 163 l~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l-~~~~~~~~~~g~~ 239 (269)
T PRK14259 163 LCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFF-NAEEVEGGSGGKV 239 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEE-ecccccccccccc
Confidence 9999999999999999999999999999999999999965 799999999975 678999999999 64
Q ss_pred CeEEEecChhhHHH
Q 046786 255 GSSLYFGKGEDVIN 268 (604)
Q Consensus 255 G~~v~~G~~~~~~~ 268 (604)
|++++.|+++++.+
T Consensus 240 g~~~~~~~~~~~~~ 253 (269)
T PRK14259 240 GYLVEFNETKKIFN 253 (269)
T ss_pred ceEEEeCCHHHHHh
Confidence 67999999988754
No 182
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1.4e-40 Score=331.39 Aligned_cols=207 Identities=30% Similarity=0.513 Sum_probs=174.9
Q ss_pred eeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-------h
Q 046786 36 VNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-------E 108 (604)
Q Consensus 36 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-------~ 108 (604)
.|+.+.+..+.+.+.+|+|+||++++||+++|+||||||||||+++|+|.++ |++|+|.++|+++.. .
T Consensus 5 ~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~~~~~~ 79 (220)
T TIGR02982 5 RNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS-----VQEGSLKVLGQELYGASEKELVQ 79 (220)
T ss_pred EEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEhHhcCHhHHHH
Confidence 4444443322223679999999999999999999999999999999999885 579999999998742 2
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISI 188 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsi 188 (604)
.++.++|++|++.+++.+|+.||+.+...... ....++..++++++++.+||.+..+ +.++.||||||||++|
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~lS~G~~qrv~l 152 (220)
T TIGR02982 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLD-----YYPHNLSGGQKQRVAI 152 (220)
T ss_pred HHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhh-----cChhhCCHHHHHHHHH
Confidence 45789999999999998999999998754321 1334455567899999999987666 4466999999999999
Q ss_pred HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecCCeE
Q 046786 189 GQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSDGSS 257 (604)
Q Consensus 189 a~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~ 257 (604)
|++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||+++|++. +.+.+|++++| ++|++
T Consensus 153 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l-~~g~~ 219 (220)
T TIGR02982 153 ARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHM-EDGKL 219 (220)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEE-ECCEE
Confidence 9999999999999999999999999999999999986 4899999999985 45799999999 88875
No 183
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=1.1e-40 Score=328.54 Aligned_cols=189 Identities=29% Similarity=0.499 Sum_probs=164.1
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCC---h-----hccccEEEEecC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS---A-----EVKRRTGFVAQN 119 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~---~-----~~~~~i~yv~Q~ 119 (604)
++.+|+|+|+++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++. . ..++.++|++|+
T Consensus 10 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~ 84 (206)
T TIGR03608 10 DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK-----FDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQN 84 (206)
T ss_pred CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEccccchhhHHHHHHhCeeEEecc
Confidence 3569999999999999999999999999999999999985 57999999999853 1 235689999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeE
Q 046786 120 NVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLL 199 (604)
Q Consensus 120 ~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~il 199 (604)
+.+++.+|++||+.+..... .....+..++++++++.+|+.+..++ .+++||||||||++||++|+.+|+++
T Consensus 85 ~~~~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~lS~G~~qr~~laral~~~p~ll 156 (206)
T TIGR03608 85 FALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQ-----KIYELSGGEQQRVALARAILKDPPLI 156 (206)
T ss_pred hhhccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcC-----ChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999875432 22344455678999999999876664 45699999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEE
Q 046786 200 FLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLL 251 (604)
Q Consensus 200 lLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll 251 (604)
+|||||+|||+.+...+.+.|++++++|+|||+++|++. . ...+|++++|
T Consensus 157 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~-~~~~d~i~~l 206 (206)
T TIGR03608 157 LADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE-V-AKQADRVIEL 206 (206)
T ss_pred EEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-H-HhhcCEEEeC
Confidence 999999999999999999999999877999999999985 3 4679998874
No 184
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-40 Score=335.57 Aligned_cols=223 Identities=22% Similarity=0.335 Sum_probs=179.6
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-----
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----- 107 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----- 107 (604)
++..|+.+.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++....+++|+|.++|+++..
T Consensus 5 l~~~~l~~~~----~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 5 IKIRGVNFFY----HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred EEEEEEEEEE----CCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 4445555443 2356999999999999999999999999999999999998642111347999999998732
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHH
Q 046786 108 -EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRI 186 (604)
Q Consensus 108 -~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 186 (604)
..++.++|++|++.+++. |++||+.+....+. . ..+++..+.+++.++.+++.+..... .++.+..||||||||+
T Consensus 81 ~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~-~-~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~Gq~qrv 156 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLG-T-TAQSRLDEVVEKSLRQAALWDEVKDN-LHKSGLALSGGQQQRL 156 (251)
T ss_pred HHhhceEEEEecCCccCcC-cHHHHHhhHHHhcC-C-ChhhHHHHHHHHHHHHhCCchhhhhH-hhCCcccCCHHHHHHH
Confidence 346789999999998875 99999998754321 1 11223345677888888875422111 2356779999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhH
Q 046786 187 SIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266 (604)
Q Consensus 187 sia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~ 266 (604)
+||++|+.+|++++|||||+|||+.++..+.+.|++++ +|+|||+++|++. .+...+|++++| ++|++++.|+++++
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l-~~G~i~~~~~~~~~ 233 (251)
T PRK14249 157 CIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFL-LTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEE-eCCeEEEeCCHHHH
Confidence 99999999999999999999999999999999999995 5899999999975 577889999999 89999999998766
No 185
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=2.5e-40 Score=337.52 Aligned_cols=218 Identities=26% Similarity=0.422 Sum_probs=179.6
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEe-----CC
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQ-----FS 106 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~-----~~ 106 (604)
+++..|+.+.+. ++.+|+|+|+++++||+++|+||||||||||+|+|+|+++ |++|+|.++|++ +.
T Consensus 6 ~l~~~~l~~~~~----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~i~ 76 (258)
T PRK11701 6 LLSVRGLTKLYG----PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA-----PDAGEVHYRMRDGQLRDLY 76 (258)
T ss_pred eEEEeeeEEEcC----CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCccccccccc
Confidence 455566655442 3569999999999999999999999999999999999985 579999999987 53
Q ss_pred h----h----ccccEEEEecCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccC
Q 046786 107 A----E----VKRRTGFVAQNNV--FYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLAR-CRNSIIGGRLV 175 (604)
Q Consensus 107 ~----~----~~~~i~yv~Q~~~--l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~ 175 (604)
. . .++.++|++|++. +++.+|+.||+.+..... . .....+..+++.++++.+++.+ ..+ +.+
T Consensus 77 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~ 149 (258)
T PRK11701 77 ALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAV-G-ARHYGDIRATAGDWLERVEIDAARID-----DLP 149 (258)
T ss_pred cCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHh-c-cCcHHHHHHHHHHHHHHcCCChhHHh-----CCC
Confidence 2 1 2457999999973 677889999997654221 1 1122334556889999999964 444 456
Q ss_pred CCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecC
Q 046786 176 RGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSD 254 (604)
Q Consensus 176 ~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~ 254 (604)
+.||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|++++++ |.|||+++|++. .+...+|++++| ++
T Consensus 150 ~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i~~l-~~ 227 (258)
T PRK11701 150 TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRLLVM-KQ 227 (258)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEE-EC
Confidence 799999999999999999999999999999999999999999999999875 899999999975 567789999999 89
Q ss_pred CeEEEecChhhHH
Q 046786 255 GSSLYFGKGEDVI 267 (604)
Q Consensus 255 G~~v~~G~~~~~~ 267 (604)
|++++.|+++++.
T Consensus 228 g~i~~~~~~~~~~ 240 (258)
T PRK11701 228 GRVVESGLTDQVL 240 (258)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999887653
No 186
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=9.6e-41 Score=371.43 Aligned_cols=219 Identities=24% Similarity=0.403 Sum_probs=185.5
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+++.+ +++.+|+|+|+++++||+++|+||||||||||||+|+|+++ |++|+|.++|+++..
T Consensus 4 ~i~~~~l~~~~----~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~~~~~ 74 (501)
T PRK10762 4 LLQLKGIDKAF----PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT-----RDAGSILYLGKEVTFNGPK 74 (501)
T ss_pred eEEEeeeEEEe----CCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCCCCHH
Confidence 45666665544 23569999999999999999999999999999999999985 579999999998742
Q ss_pred h-ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHH
Q 046786 108 E-VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLP-NSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKR 185 (604)
Q Consensus 108 ~-~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 185 (604)
. .++.++||+|++.+++.+||+||+.++...+.. ...+.++.+++++++++.+||.+..| +.+.+||||||||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qr 149 (501)
T PRK10762 75 SSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSD-----KLVGELSIGEQQM 149 (501)
T ss_pred HHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCcc-----CchhhCCHHHHHH
Confidence 1 246799999999999999999999986432211 11233444567889999999988776 4456999999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhh
Q 046786 186 ISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGED 265 (604)
Q Consensus 186 vsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~ 265 (604)
|+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. .+..++|++++| ++|+++..|++++
T Consensus 150 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l-~~G~i~~~~~~~~ 227 (501)
T PRK10762 150 VEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVF-RDGQFIAEREVAD 227 (501)
T ss_pred HHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEE-eCCEEEEecCcCc
Confidence 99999999999999999999999999999999999999878999999999975 677899999999 8999999998765
Q ss_pred H
Q 046786 266 V 266 (604)
Q Consensus 266 ~ 266 (604)
+
T Consensus 228 ~ 228 (501)
T PRK10762 228 L 228 (501)
T ss_pred C
Confidence 4
No 187
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-40 Score=324.06 Aligned_cols=188 Identities=49% Similarity=0.782 Sum_probs=161.5
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhcccc
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRR 112 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 112 (604)
++..|+.+.+.....++.+|+|+|+++++||+++|+|||||||||||++|+|+.+. .|++|+|.++|+++....++.
T Consensus 4 l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~~~G~i~~~g~~~~~~~~~~ 80 (192)
T cd03232 4 LTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTA---GVITGEILINGRPLDKNFQRS 80 (192)
T ss_pred EEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcC---CCcceEEEECCEehHHHhhhc
Confidence 44556655553222235699999999999999999999999999999999997531 257999999999876555678
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHH
Q 046786 113 TGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQEL 192 (604)
Q Consensus 113 i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L 192 (604)
++|++|++.+++.+|++||+.+....+ .||||||||++||++|
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~-------------------------------------~LSgGe~qrv~la~al 123 (192)
T cd03232 81 TGYVEQQDVHSPNLTVREALRFSALLR-------------------------------------GLSVEQRKRLTIGVEL 123 (192)
T ss_pred eEEecccCccccCCcHHHHHHHHHHHh-------------------------------------cCCHHHhHHHHHHHHH
Confidence 999999999999999999998753110 6999999999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecC-CeEEEec
Q 046786 193 LINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSD-GSSLYFG 261 (604)
Q Consensus 193 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~-G~~v~~G 261 (604)
+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++...+...+|++++| ++ |++++.|
T Consensus 124 ~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l-~~~g~i~~~g 192 (192)
T cd03232 124 AAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLL-KRGGKTVYFG 192 (192)
T ss_pred hcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEE-cCCCeEEeCC
Confidence 99999999999999999999999999999998779999999999864567889999999 77 9999876
No 188
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-40 Score=338.88 Aligned_cols=224 Identities=26% Similarity=0.385 Sum_probs=182.3
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++....|++|+|.++|.++..
T Consensus 25 ~l~~~nl~~~~~----~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~ 100 (272)
T PRK14236 25 ALEVRNLNLFYG----DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100 (272)
T ss_pred EEEEEEEEEEEC----CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence 466667665542 356999999999999999999999999999999999997521111479999999998742
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHH
Q 046786 108 --EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKR 185 (604)
Q Consensus 108 --~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 185 (604)
..++.++|++|++.+++. |++||+.+..... ....++..+++++++++.+++.+...+.. ++.++.||||||||
T Consensus 101 ~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qr 176 (272)
T PRK14236 101 VAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQ--GINNRRVLDEAVERSLRGAALWDEVKDRL-HENAFGLSGGQQQR 176 (272)
T ss_pred HHHHhccEEEEecCCccCcc-cHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCChhHHHHh-hCCcccCCHHHHHH
Confidence 346789999999988886 9999998875432 11123333456888999999864211111 25567999999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhh
Q 046786 186 ISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGED 265 (604)
Q Consensus 186 vsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~ 265 (604)
++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++. .+.+.+|++++| ++|+++..|++++
T Consensus 177 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l-~~G~i~~~g~~~~ 253 (272)
T PRK14236 177 LVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFM-YMGKLVEYGDTDT 253 (272)
T ss_pred HHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEE-ECCEEEecCCHHH
Confidence 9999999999999999999999999999999999999986 789999999975 577889999999 8999999998876
Q ss_pred H
Q 046786 266 V 266 (604)
Q Consensus 266 ~ 266 (604)
.
T Consensus 254 ~ 254 (272)
T PRK14236 254 L 254 (272)
T ss_pred H
Confidence 5
No 189
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-41 Score=313.71 Aligned_cols=210 Identities=29% Similarity=0.493 Sum_probs=186.3
Q ss_pred ccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCC-------------h---
Q 046786 44 NSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS-------------A--- 107 (604)
Q Consensus 44 ~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~-------------~--- 107 (604)
+.++...+|++||++.++|+++.|+|.|||||||+|+||.-+.+ |+.|+|.+||+.+. .
T Consensus 14 K~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~-----P~~G~I~v~geei~~k~~~~G~l~~ad~~q~ 88 (256)
T COG4598 14 KRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK-----PSAGSIRVNGEEIRLKRDKDGQLKPADKRQL 88 (256)
T ss_pred hhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC-----CCCceEEECCeEEEeeeCCCCCeeeCCHHHH
Confidence 34567889999999999999999999999999999999998875 67999999998752 0
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHH
Q 046786 108 -EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRI 186 (604)
Q Consensus 108 -~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 186 (604)
.+|.+.|+|+|+..|++++||.||+.-+..--+ ..++.+..++++.+|+.+|+.+.+| .++..|||||+||+
T Consensus 89 ~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVL--g~~k~ea~e~Ae~~L~kVGi~ek~~-----~YP~~LSGGQQQR~ 161 (256)
T COG4598 89 QRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL--GVSKAEAIERAEKYLAKVGIAEKAD-----AYPAHLSGGQQQRV 161 (256)
T ss_pred HHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhh--cCCHHHHHHHHHHHHHHhCchhhhh-----cCccccCchHHHHH
Confidence 245578999999999999999999976432211 3578888899999999999999887 55779999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhH
Q 046786 187 SIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266 (604)
Q Consensus 187 sia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~ 266 (604)
+|||||+.+|+++++|||||.|||.-.-++++.+++||++|+|.+++||.+. -.-+...+++.| .+|.+-..|+|+++
T Consensus 162 aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~-FAR~Vss~v~fL-h~G~iEE~G~P~qv 239 (256)
T COG4598 162 AIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMG-FARDVSSHVIFL-HQGKIEEEGPPEQV 239 (256)
T ss_pred HHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehh-HHHhhhhheEEe-ecceecccCChHHH
Confidence 9999999999999999999999999999999999999999999999999986 356778899999 99999999999987
Q ss_pred H
Q 046786 267 I 267 (604)
Q Consensus 267 ~ 267 (604)
.
T Consensus 240 f 240 (256)
T COG4598 240 F 240 (256)
T ss_pred h
Confidence 4
No 190
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-40 Score=371.88 Aligned_cols=219 Identities=26% Similarity=0.380 Sum_probs=184.7
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+++.+ +++.+|+|+||++++||+++|+||||||||||||+|+|+.+ |++|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~----~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~i~~~~~~ 75 (510)
T PRK09700 5 YISMAGIGKSF----GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE-----PTKGTITINNINYNKLDHK 75 (510)
T ss_pred eEEEeeeEEEc----CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC-----CCccEEEECCEECCCCCHH
Confidence 45666665544 34569999999999999999999999999999999999985 579999999998742
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHhcC-CCC---CCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHH
Q 046786 108 -EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRL-PNS---LKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGE 182 (604)
Q Consensus 108 -~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~-~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 182 (604)
..++.++||+|++.+++.+||+||+.++..... ... ...++..++++++++.+||.+..| +.+++|||||
T Consensus 76 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LSgG~ 150 (510)
T PRK09700 76 LAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLD-----EKVANLSISH 150 (510)
T ss_pred HHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcc-----cchhhCCHHH
Confidence 124579999999999999999999987532110 001 123344567899999999987766 4456999999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecC
Q 046786 183 RKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGK 262 (604)
Q Consensus 183 rqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~ 262 (604)
||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. .+..++|++++| ++|++++.|+
T Consensus 151 ~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l-~~G~i~~~g~ 228 (510)
T PRK09700 151 KQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVM-KDGSSVCSGM 228 (510)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-ECCEEeeecc
Confidence 99999999999999999999999999999999999999999888999999999975 677899999999 8999999999
Q ss_pred hhhH
Q 046786 263 GEDV 266 (604)
Q Consensus 263 ~~~~ 266 (604)
++++
T Consensus 229 ~~~~ 232 (510)
T PRK09700 229 VSDV 232 (510)
T ss_pred hhhC
Confidence 8765
No 191
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=6.7e-41 Score=337.26 Aligned_cols=199 Identities=27% Similarity=0.514 Sum_probs=163.6
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----hccccEEEEecCCCCCC
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----EVKRRTGFVAQNNVFYP 124 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~ 124 (604)
+.+|+|+|+++++||+++|+|||||||||||++|+|+.+ |++|+|.++|+++.. ..++.++|++|++.+++
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV-----PENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN 89 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc
Confidence 569999999999999999999999999999999999985 579999999998642 34677999999988775
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHH-----HHHHHHHHHc--CCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCC
Q 046786 125 HLTVAETLVFTALLRLPNSLKREEKV-----LHAEAVINQL--GLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPS 197 (604)
Q Consensus 125 ~lTv~e~l~f~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~ 197 (604)
.||+||+.+... ........ ....++++.+ ++....+ +.++.|||||||||+||++|+.+|+
T Consensus 90 -~tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-----~~~~~LSgG~~qrv~laral~~~p~ 158 (237)
T cd03252 90 -RSIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVG-----EQGAGLSGGQRQRIAIARALIHNPR 158 (237)
T ss_pred -chHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhh-----cCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 699999977421 11111111 1123444444 4433333 4567999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 198 LLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 198 illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
+++|||||+|||+.+...+.+.|+++++ |+|||+++|++. .+ ..+|++++| ++|++++.|+++++.
T Consensus 159 llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~-~~~d~v~~l-~~G~i~~~~~~~~~~ 224 (237)
T cd03252 159 ILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLS-TV-KNADRIIVM-EKGRIVEQGSHDELL 224 (237)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-HhCCEEEEE-ECCEEEEEcCHHHHH
Confidence 9999999999999999999999999974 899999999986 45 469999999 899999999987764
No 192
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-40 Score=338.53 Aligned_cols=225 Identities=26% Similarity=0.387 Sum_probs=184.4
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
++...|+.+.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++....|++|+|.++|.++..
T Consensus 21 ~l~i~nl~~~~----~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 96 (276)
T PRK14271 21 AMAAVNLTLGF----AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDV 96 (276)
T ss_pred EEEEeeEEEEE----CCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchh
Confidence 35666665554 2457999999999999999999999999999999999998632112469999999998742
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHH
Q 046786 108 -EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRI 186 (604)
Q Consensus 108 -~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 186 (604)
..++.++|++|++.+++ .|++||+.+..... ...+.++..+++.++++.+|+.+..++.. ++.++.||||||||+
T Consensus 97 ~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LSgGq~qrl 172 (276)
T PRK14271 97 LEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRL-SDSPFRLSGGQQQLL 172 (276)
T ss_pred HHHhhheEEeccCCccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHh-hCCcccCCHHHHHHH
Confidence 34678999999998888 79999998864322 11234444456788999999975332222 245779999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhH
Q 046786 187 SIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266 (604)
Q Consensus 187 sia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~ 266 (604)
+|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.+|++++| ++|+++..|+++++
T Consensus 173 ~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l-~~G~i~~~g~~~~~ 249 (276)
T PRK14271 173 CLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALF-FDGRLVEEGPTEQL 249 (276)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEE-ECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999986 589999999975 678899999999 89999999998876
Q ss_pred H
Q 046786 267 I 267 (604)
Q Consensus 267 ~ 267 (604)
.
T Consensus 250 ~ 250 (276)
T PRK14271 250 F 250 (276)
T ss_pred H
Confidence 4
No 193
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-40 Score=335.48 Aligned_cols=226 Identities=23% Similarity=0.377 Sum_probs=183.2
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCC------
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS------ 106 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~------ 106 (604)
++..|+.+.+ +.+.+|+|+|+++++||+++|+|||||||||||++|+|+.++....+.+|+|.++|+++.
T Consensus 8 l~~~nl~~~~----~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 8 IKVNNLSFYY----DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred EEEeeEEEEe----CCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 4555555443 234699999999999999999999999999999999999864211134899999998863
Q ss_pred hhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHH
Q 046786 107 AEVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRI 186 (604)
Q Consensus 107 ~~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 186 (604)
...++.++|++|+..+++ +|++||+.+...... ..+..+..+++.++++.+++.+..+... ++.+..||||||||+
T Consensus 84 ~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv 159 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKI-HKSALDLSGGQQQRL 159 (261)
T ss_pred HHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHh-cCCcccCCHHHHHHH
Confidence 134667999999988888 899999988654321 1133344456889999999864322111 256779999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecC-----CeEEEe
Q 046786 187 SIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSD-----GSSLYF 260 (604)
Q Consensus 187 sia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~-----G~~v~~ 260 (604)
+||++|+.+|++++|||||+|||+.+...+.+.|+++++ .|+|||+++|++. .+.+++|++++| ++ |++++.
T Consensus 160 ~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l-~~~~~~~G~i~~~ 237 (261)
T PRK14258 160 CIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFF-KGNENRIGQLVEF 237 (261)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEE-ccCCCcCceEEEe
Confidence 999999999999999999999999999999999999975 5899999999985 688899999999 78 999999
Q ss_pred cChhhHHH
Q 046786 261 GKGEDVIN 268 (604)
Q Consensus 261 G~~~~~~~ 268 (604)
|+++++.+
T Consensus 238 ~~~~~~~~ 245 (261)
T PRK14258 238 GLTKKIFN 245 (261)
T ss_pred CCHHHHHh
Confidence 99988743
No 194
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=3.1e-40 Score=336.06 Aligned_cols=218 Identities=24% Similarity=0.328 Sum_probs=178.7
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-h-c
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-E-V 109 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-~-~ 109 (604)
+++..|+++.+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++.. .+++|+|.++|+++.. . .
T Consensus 4 ~l~~~~l~~~~-----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~-~~~~G~i~~~g~~i~~~~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-----AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGV-RQTAGRVLLDGKPVAPCALR 77 (254)
T ss_pred EEEEeCeEEEe-----ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-CCcCCEEEECCeeccccccc
Confidence 35555665544 2469999999999999999999999999999999999986311 1279999999998753 2 2
Q ss_pred cccEEEEecCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc---ccccccCccCCCcCHHHHH
Q 046786 110 KRRTGFVAQNNV--FYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARC---RNSIIGGRLVRGLSGGERK 184 (604)
Q Consensus 110 ~~~i~yv~Q~~~--l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~---~~~~vg~~~~~~LSgGerq 184 (604)
++.++||+|++. +.+.+|+.+++.+.+.... ... ..+++.++++.++|.+. .+ +.++.|||||||
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~-----~~~~~LS~Gq~q 147 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAARVLK-----LYPFEMSGGMLQ 147 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChhhhhh-----cCCcccCHHHHH
Confidence 457999999974 4566899999877543221 112 22568899999999762 33 456799999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecCh
Q 046786 185 RISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKG 263 (604)
Q Consensus 185 Rvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~ 263 (604)
|++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+...+|++++| ++|+++..|++
T Consensus 148 rv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l-~~G~i~~~~~~ 225 (254)
T PRK10418 148 RMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVM-SHGRIVEQGDV 225 (254)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEE-ECCEEEEecCH
Confidence 999999999999999999999999999999999999999864 899999999976 577889999999 89999999998
Q ss_pred hhHH
Q 046786 264 EDVI 267 (604)
Q Consensus 264 ~~~~ 267 (604)
+++.
T Consensus 226 ~~~~ 229 (254)
T PRK10418 226 ETLF 229 (254)
T ss_pred HHHh
Confidence 7663
No 195
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-40 Score=334.21 Aligned_cols=225 Identities=23% Similarity=0.364 Sum_probs=180.6
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+.+.+ +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++....+++|+|.++|+++..
T Consensus 6 ~i~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (253)
T PRK14261 6 ILSTKNLNLWY----GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81 (253)
T ss_pred eEEEeeeEEEE----CCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccc
Confidence 45555665543 3456999999999999999999999999999999999986421001248999999998742
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHH
Q 046786 108 --EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKR 185 (604)
Q Consensus 108 --~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 185 (604)
..++.++|++|++.+++. ||+||+.+....+. .....+.++.+.++++.+++.+...+.. ++.++.||||||||
T Consensus 82 ~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~qr 157 (253)
T PRK14261 82 VVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAALWDEVKDRL-HDSALSLSGGQQQR 157 (253)
T ss_pred hhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcCchhhHHHh-hcChhhCCHHHHHH
Confidence 345679999999988885 99999998765431 1122333456788899998853211111 25577999999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhh
Q 046786 186 ISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGED 265 (604)
Q Consensus 186 vsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~ 265 (604)
++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.+|++++| ++|+++..|++++
T Consensus 158 v~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l-~~G~i~~~g~~~~ 234 (253)
T PRK14261 158 LCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFM-YLGKLIEFDKTTQ 234 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEE-ECCEEEEcCCHHH
Confidence 9999999999999999999999999999999999999976 589999999975 577889999999 8999999999876
Q ss_pred HH
Q 046786 266 VI 267 (604)
Q Consensus 266 ~~ 267 (604)
+.
T Consensus 235 ~~ 236 (253)
T PRK14261 235 IF 236 (253)
T ss_pred HH
Confidence 63
No 196
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-40 Score=336.00 Aligned_cols=213 Identities=22% Similarity=0.352 Sum_probs=176.8
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh------hccccEEEEecCC
Q 046786 47 EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA------EVKRRTGFVAQNN 120 (604)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~------~~~~~i~yv~Q~~ 120 (604)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|++++....+++|+|.++|+++.. ..++.++|++|++
T Consensus 19 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 98 (261)
T PRK14263 19 GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQP 98 (261)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCC
Confidence 4567999999999999999999999999999999999998631111369999999998732 3456799999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEE
Q 046786 121 VFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLF 200 (604)
Q Consensus 121 ~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~ill 200 (604)
.++ .+|+.||+.+....+. . ..+..++++++++.++|.+..+... ++.++.||||||||++|||+|+++|++|+
T Consensus 99 ~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~G~~qrv~laral~~~p~lll 172 (261)
T PRK14263 99 NPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKL-KVSGLSLSGGQQQRLCIARAIATEPEVLL 172 (261)
T ss_pred ccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhh-hCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 887 5899999998765431 1 2233457889999999865332222 24677999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEe-------cCCeEEEecChhhHH
Q 046786 201 LDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLS-------SDGSSLYFGKGEDVI 267 (604)
Q Consensus 201 LDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~-------~~G~~v~~G~~~~~~ 267 (604)
|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+++|++++|. .+|+++..|+++++.
T Consensus 173 lDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~~-~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 173 LDEPCSALDPIATRRVEELMVELKK-DYTIALVTHNMQ-QAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEecccccccCCceEEEeCCHHHHH
Confidence 9999999999999999999999964 799999999986 5778999999993 289999999987664
No 197
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-40 Score=344.80 Aligned_cols=226 Identities=22% Similarity=0.355 Sum_probs=185.5
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|++..+.. +.+.+|+|+|++|++||++||+|||||||||||++|+|..+.....|++|+|.++|+++..
T Consensus 80 ~i~~~nls~~y~~--~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~ 157 (329)
T PRK14257 80 VFEIRNFNFWYMN--RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKIS 157 (329)
T ss_pred eEEEEeeEEEecC--CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 4555566555432 2356999999999999999999999999999999999987521112569999999999851
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHH
Q 046786 108 --EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLK-REEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERK 184 (604)
Q Consensus 108 --~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~-~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 184 (604)
..++.++||||++.+++ .|++||+.|+.... ..+ ++...+.+.+.++.++|.+..++.++ +....|||||||
T Consensus 158 ~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~-~~~~~LSgGqkq 232 (329)
T PRK14257 158 SLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLD-KAGNALSGGQQQ 232 (329)
T ss_pred hHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhh-CCcccCCHHHHH
Confidence 35678999999998885 79999999865331 122 22334457888999998654444554 567899999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChh
Q 046786 185 RISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGE 264 (604)
Q Consensus 185 Rvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~ 264 (604)
|++|||||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||+++|++. .+.+.+|++++| ++|+++..|+++
T Consensus 233 Rl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl-~~G~i~e~g~~~ 309 (329)
T PRK14257 233 RLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFF-YQGWIEEAGETK 309 (329)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEE-ECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999976 699999999975 577789999999 899999999999
Q ss_pred hHH
Q 046786 265 DVI 267 (604)
Q Consensus 265 ~~~ 267 (604)
++.
T Consensus 310 ~l~ 312 (329)
T PRK14257 310 TIF 312 (329)
T ss_pred HHh
Confidence 875
No 198
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-40 Score=334.93 Aligned_cols=225 Identities=23% Similarity=0.374 Sum_probs=181.1
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+.+.+ +++.+|+|+|+++++||+++|+|+||||||||||+|+|++++.....++|+|.++|+++..
T Consensus 7 ~l~~~~l~~~~----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 7 AIKVKDLSFYY----NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred eEEEEEEEEEE----CCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 45555665544 2356999999999999999999999999999999999987631000158999999998731
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHH
Q 046786 108 --EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKR 185 (604)
Q Consensus 108 --~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 185 (604)
..++.++|++|++.+++ +|++||+.+....+. ..++.+..++++++++.+|+.+..... -++.+.+||||||||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G~~qr 158 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDK-LNKSALGLSGGQQQR 158 (259)
T ss_pred hHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhH-hcCCcccCCHHHHHH
Confidence 34568999999999887 899999988754331 123334445678899999985311111 125577999999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEec-----CCeEEEe
Q 046786 186 ISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSS-----DGSSLYF 260 (604)
Q Consensus 186 vsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~-----~G~~v~~ 260 (604)
++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.+|++++| + +|++++.
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l-~~~~~~~G~i~~~ 235 (259)
T PRK14260 159 LCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFF-STDESRIGQMVEF 235 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEE-eccCCCCceEEEe
Confidence 9999999999999999999999999999999999999975 699999999986 678899999999 5 5999999
Q ss_pred cChhhHH
Q 046786 261 GKGEDVI 267 (604)
Q Consensus 261 G~~~~~~ 267 (604)
|+++++.
T Consensus 236 ~~~~~~~ 242 (259)
T PRK14260 236 GVTTQIF 242 (259)
T ss_pred CCHHHHh
Confidence 9998763
No 199
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-40 Score=332.48 Aligned_cols=224 Identities=25% Similarity=0.401 Sum_probs=179.4
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+.+.+. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+.++....|++|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~----~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~ 79 (251)
T PRK14251 4 IISAKDVHLSYG----NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79 (251)
T ss_pred eEEEEeeEEEEC----CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccch
Confidence 355566655442 356999999999999999999999999999999999987510001368999999998631
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHH
Q 046786 108 --EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKR 185 (604)
Q Consensus 108 --~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 185 (604)
..++.++|++|++.+++ .||+||+.+...... ....+...+.++++++.+++....... -++.+.+||||||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~Gq~qr 155 (251)
T PRK14251 80 LVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDN-LDRNAQAFSGGQQQR 155 (251)
T ss_pred HHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHH-hccChhhCCHHHHHH
Confidence 34667999999998886 799999988654321 112233345678899999985311000 124567999999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhh
Q 046786 186 ISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGED 265 (604)
Q Consensus 186 vsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~ 265 (604)
++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.+|++++| ++|+++..|++++
T Consensus 156 ~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l-~~G~i~~~~~~~~ 232 (251)
T PRK14251 156 ICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFL-MNGDLIEAGPTEE 232 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEE-ECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999965 699999999985 577889999999 8999999998876
Q ss_pred H
Q 046786 266 V 266 (604)
Q Consensus 266 ~ 266 (604)
+
T Consensus 233 ~ 233 (251)
T PRK14251 233 M 233 (251)
T ss_pred H
Confidence 6
No 200
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2.7e-40 Score=368.36 Aligned_cols=212 Identities=23% Similarity=0.393 Sum_probs=183.4
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+.+.+ +++.+|+|+|+++++||+++|+||||||||||||+|+|+++ |++|+|.++|+++..
T Consensus 11 ~l~~~~l~~~~----~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~~~ 81 (510)
T PRK15439 11 LLCARSISKQY----SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP-----PDSGTLEIGGNPCARLTPA 81 (510)
T ss_pred eEEEEeEEEEe----CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCCCCHH
Confidence 46666766554 24569999999999999999999999999999999999985 579999999998742
Q ss_pred h-ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHH
Q 046786 108 E-VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRI 186 (604)
Q Consensus 108 ~-~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 186 (604)
. .++.+|||+|++.+++.+||+||+.+.... ..+..++++++++.+||.+..+ +.+++|||||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrv 149 (510)
T PRK15439 82 KAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLD-----SSAGSLEVADRQIV 149 (510)
T ss_pred HHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCcccc-----CChhhCCHHHHHHH
Confidence 1 234699999999999999999999875311 1233457889999999987766 44569999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhH
Q 046786 187 SIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266 (604)
Q Consensus 187 sia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~ 266 (604)
+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+..++|++++| ++|++++.|+++++
T Consensus 150 ~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l-~~G~i~~~g~~~~~ 227 (510)
T PRK15439 150 EILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVM-RDGTIALSGKTADL 227 (510)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEE-ECCEEEEecChHHc
Confidence 9999999999999999999999999999999999999888999999999975 577899999999 89999999998765
No 201
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-39 Score=331.25 Aligned_cols=225 Identities=23% Similarity=0.379 Sum_probs=178.7
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+++.+ +.+.+|+|+|+++++||+++|+|||||||||||++|+|+.+.....+++|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 80 (252)
T PRK14255 5 IITSSDVHLFY----GKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80 (252)
T ss_pred eEEEEeEEEEE----CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccccccc
Confidence 45556665544 2356999999999999999999999999999999999986410001258999999998731
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHH
Q 046786 108 --EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKR 185 (604)
Q Consensus 108 --~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 185 (604)
..++.++|++|++.+++ .|++||+.+....+. ...++...+++.+.++.+++........ ++.+..||||||||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~Gq~qr 156 (252)
T PRK14255 81 VVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAG--VKDKAVLDEAVETSLKQAAIWDEVKDHL-HESALSLSGGQQQR 156 (252)
T ss_pred HHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCccchhhHH-hcCcccCCHHHHHH
Confidence 34568999999998888 699999998754321 1122222345677888888742111111 24567999999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhh
Q 046786 186 ISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGED 265 (604)
Q Consensus 186 vsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~ 265 (604)
++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||+++|++. .+.+.+|++++| ++|+++..|++.+
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l-~~G~i~~~~~~~~ 233 (252)
T PRK14255 157 VCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFF-LTGNLIEFADTKQ 233 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEE-ECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999976 589999999985 677889999999 8999999998876
Q ss_pred HH
Q 046786 266 VI 267 (604)
Q Consensus 266 ~~ 267 (604)
..
T Consensus 234 ~~ 235 (252)
T PRK14255 234 MF 235 (252)
T ss_pred Hh
Confidence 63
No 202
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=5.9e-40 Score=336.58 Aligned_cols=221 Identities=26% Similarity=0.410 Sum_probs=182.5
Q ss_pred heeeeEEEEEec-----cccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh
Q 046786 33 LKKVNMLVIIKN-----SDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA 107 (604)
Q Consensus 33 ~~~~~~~~~~~~-----~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~ 107 (604)
++..|+.+.+.. +..++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~sG~i~~~g~~~~~ 78 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES-----PSQGNVSWRGEPLAK 78 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEeccc
Confidence 455566554431 0013679999999999999999999999999999999999875 579999999998742
Q ss_pred -------hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCC
Q 046786 108 -------EVKRRTGFVAQNN--VFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLA-RCRNSIIGGRLVRG 177 (604)
Q Consensus 108 -------~~~~~i~yv~Q~~--~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~ 177 (604)
..++.++|++|++ .+++..|+.|++.+..... ......+..++++++++.+|+. +..+ +.++.
T Consensus 79 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~~ 151 (268)
T PRK10419 79 LNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLD-----KRPPQ 151 (268)
T ss_pred cChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhh-----CCCcc
Confidence 2456899999997 4677889999997754311 1223444556789999999996 4455 45669
Q ss_pred cCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCe
Q 046786 178 LSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGS 256 (604)
Q Consensus 178 LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~ 256 (604)
||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|++++++ |.|||+++|++. .+..++|++++| ++|+
T Consensus 152 LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l-~~G~ 229 (268)
T PRK10419 152 LSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVM-DNGQ 229 (268)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEE-ECCE
Confidence 9999999999999999999999999999999999999999999999875 899999999975 677889999999 8999
Q ss_pred EEEecChhhHH
Q 046786 257 SLYFGKGEDVI 267 (604)
Q Consensus 257 ~v~~G~~~~~~ 267 (604)
+++.|+++++.
T Consensus 230 i~~~g~~~~~~ 240 (268)
T PRK10419 230 IVETQPVGDKL 240 (268)
T ss_pred EeeeCChhhcc
Confidence 99999987754
No 203
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=4.5e-41 Score=381.04 Aligned_cols=217 Identities=29% Similarity=0.496 Sum_probs=182.7
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~ 108 (604)
++..|+++.+.. .+..+|+|+|++|+|||.+||+|+||||||||+|+|+|+++ |++|+|.+||.+++. .
T Consensus 472 I~~~nvsf~y~~--~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~-----p~~G~I~~dg~dl~~i~~~~ 544 (709)
T COG2274 472 IEFENVSFRYGP--DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK-----PQQGRILLDGVDLNDIDLAS 544 (709)
T ss_pred EEEEEEEEEeCC--CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEeHHhcCHHH
Confidence 455566665543 23479999999999999999999999999999999999986 679999999999853 6
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCccCCCcCHHHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVL-----HAEAVINQLGLARCRNSIIGGRLVRGLSGGER 183 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 183 (604)
+|+++|||+||+.+|.. |++||+.++. | ..+.++..+ .+.+.+. .+..-.||.+| +...+||||||
T Consensus 545 lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~----p-~~~~e~i~~A~~~ag~~~fI~--~lP~gy~t~v~-E~G~~LSGGQr 615 (709)
T COG2274 545 LRRQVGYVLQDPFLFSG-SIRENIALGN----P-EATDEEIIEAAQLAGAHEFIE--NLPMGYDTPVG-EGGANLSGGQR 615 (709)
T ss_pred HHhheeEEcccchhhcC-cHHHHHhcCC----C-CCCHHHHHHHHHHhCcHHHHH--hcccccccccc-cCCCCCCHHHH
Confidence 89999999999999976 9999998753 2 223232221 1233333 35566789998 66789999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecCh
Q 046786 184 KRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKG 263 (604)
Q Consensus 184 qRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~ 263 (604)
||++|||+|+++|+||+||||||+||+.+...|.+.|+++.. |+|+|+++|.++ ..+.+|++++| ++|+++..|+.
T Consensus 616 QrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl~--ti~~adrIiVl-~~Gkiv~~gs~ 691 (709)
T COG2274 616 QRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIIIAHRLS--TIRSADRIIVL-DQGKIVEQGSH 691 (709)
T ss_pred HHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccch--HhhhccEEEEc-cCCceeccCCH
Confidence 999999999999999999999999999999999999999975 799999999985 57889999999 89999999999
Q ss_pred hhHHHH
Q 046786 264 EDVINY 269 (604)
Q Consensus 264 ~~~~~~ 269 (604)
+++.+.
T Consensus 692 ~ell~~ 697 (709)
T COG2274 692 EELLAQ 697 (709)
T ss_pred HHHHHh
Confidence 988764
No 204
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-40 Score=332.73 Aligned_cols=201 Identities=31% Similarity=0.505 Sum_probs=166.2
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----hccccEEEEecCCCCCC
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----EVKRRTGFVAQNNVFYP 124 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~ 124 (604)
+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ |++|+|.++|+++.. ..++.++|++|++.+++
T Consensus 15 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (234)
T cd03251 15 PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD-----VDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN 89 (234)
T ss_pred ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc-----CCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc
Confidence 369999999999999999999999999999999999985 579999999988642 34677999999998886
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHH-----HHHHHHHHHHc--CCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCC
Q 046786 125 HLTVAETLVFTALLRLPNSLKREEK-----VLHAEAVINQL--GLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPS 197 (604)
Q Consensus 125 ~lTv~e~l~f~~~~~~~~~~~~~~~-----~~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~ 197 (604)
.||+||+.+.... ....+. ...+.+.++.+ ++.+..+ +.+..||||||||++||++|+.+|+
T Consensus 90 -~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-----~~~~~LS~G~~qrv~la~al~~~p~ 158 (234)
T cd03251 90 -DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIG-----ERGVKLSGGQRQRIAIARALLKDPP 158 (234)
T ss_pred -ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeec-----cCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 6999999875321 111111 11235556655 5554443 4567999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHHHH
Q 046786 198 LLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVINY 269 (604)
Q Consensus 198 illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~~~ 269 (604)
+++|||||+|||+.+...+.+.|+++++ |+|||+++|++. .+.. +|++++| ++|+++..|+++++.+.
T Consensus 159 lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~v~~l-~~G~i~~~~~~~~~~~~ 226 (234)
T cd03251 159 ILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLS-TIEN-ADRIVVL-EDGKIVERGTHEELLAQ 226 (234)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHhh-CCEEEEe-cCCeEeeeCCHHHHHHc
Confidence 9999999999999999999999999975 899999999986 4544 9999999 89999999988776543
No 205
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-40 Score=372.58 Aligned_cols=222 Identities=25% Similarity=0.387 Sum_probs=186.9
Q ss_pred hheeeeEEEEEeccc-------cccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEe
Q 046786 32 MLKKVNMLVIIKNSD-------EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQ 104 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~-------~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~ 104 (604)
+++..|+++.+.... ..+.+|+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~-----p~~G~I~~~g~~ 387 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE-----SQGGEIIFNGQR 387 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCcEEEECCEE
Confidence 466667666553210 12469999999999999999999999999999999999985 579999999998
Q ss_pred CCh-------hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcc
Q 046786 105 FSA-------EVKRRTGFVAQNN--VFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLA-RCRNSIIGGRL 174 (604)
Q Consensus 105 ~~~-------~~~~~i~yv~Q~~--~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~ 174 (604)
+.. .+++.++||+|++ .+++.+||.|++.+..... ....+++..+++.++++.+||. +..+ ++
T Consensus 388 i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~L~~~gL~~~~~~-----~~ 460 (623)
T PRK10261 388 IDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVH--GLLPGKAAAARVAWLLERVGLLPEHAW-----RY 460 (623)
T ss_pred CCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHcCCCHHHhh-----CC
Confidence 742 2356899999997 5889999999999865432 1112344556789999999996 4455 55
Q ss_pred CCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEec
Q 046786 175 VRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSS 253 (604)
Q Consensus 175 ~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~ 253 (604)
+++|||||||||+||++|+.+|++|||||||+|||+.++..++++|++++++ |.|||++|||+. .+.+++|++++| +
T Consensus 461 ~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl-~ 538 (623)
T PRK10261 461 PHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVM-Y 538 (623)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE-E
Confidence 6799999999999999999999999999999999999999999999999875 999999999975 678899999999 8
Q ss_pred CCeEEEecChhhHH
Q 046786 254 DGSSLYFGKGEDVI 267 (604)
Q Consensus 254 ~G~~v~~G~~~~~~ 267 (604)
+|++++.|+++++.
T Consensus 539 ~G~iv~~g~~~~i~ 552 (623)
T PRK10261 539 LGQIVEIGPRRAVF 552 (623)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999988874
No 206
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=6.1e-40 Score=332.75 Aligned_cols=199 Identities=30% Similarity=0.455 Sum_probs=173.2
Q ss_pred eeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----hccccEEEEecCCCCCCCC
Q 046786 51 ILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----EVKRRTGFVAQNNVFYPHL 126 (604)
Q Consensus 51 iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~~l 126 (604)
+|+|+|+++++||+++|+||||||||||+++|+|+.+ .+|+|.++|+++.. ..++.++|++|++.+++.+
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~------~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 84 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP------GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAM 84 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC------CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCc
Confidence 7999999999999999999999999999999999874 28999999998742 3456799999998888889
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhh-------CCCeE
Q 046786 127 TVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLI-------NPSLL 199 (604)
Q Consensus 127 Tv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~-------~p~il 199 (604)
|++||+.+.... ....++..++++++++.+||.+..+ +.++.||||||||++||++|+. +|+++
T Consensus 85 tv~~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~ll 155 (248)
T PRK03695 85 PVFQYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLG-----RSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLL 155 (248)
T ss_pred cHHHHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhc-----CCcccCCHHHHHHHHHHHHHhccccccCCCCCEE
Confidence 999999876321 1223334567889999999987666 4466999999999999999998 67999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhH
Q 046786 200 FLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266 (604)
Q Consensus 200 lLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~ 266 (604)
+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++...+|++++| ++|+++..|+++++
T Consensus 156 llDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l-~~G~i~~~g~~~~~ 220 (248)
T PRK03695 156 LLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLL-KQGKLLASGRRDEV 220 (248)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEE-ECCEEEEECCHHHH
Confidence 999999999999999999999999877999999999975 578899999999 89999999987765
No 207
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-39 Score=336.29 Aligned_cols=222 Identities=23% Similarity=0.399 Sum_probs=178.8
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+.+.+ +++.+|+|+|++|++||+++|+|||||||||||++|+|+.++....|++|+|.++|+++..
T Consensus 39 ~l~i~~l~~~~----~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 39 VIEARDLNVFY----GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred eEEEEEEEEEE----CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 45556665544 2356999999999999999999999999999999999997521101579999999998631
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHH
Q 046786 108 --EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKR 185 (604)
Q Consensus 108 --~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 185 (604)
..++.++|++|++.+++. ||.||+.+....+. ... +..++++++++.+||.+...... ++.+..||||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LSgGe~qr 188 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQL-DSSGLDLSGGQQQR 188 (285)
T ss_pred hHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHH-hCCcccCCHHHHHH
Confidence 346789999999988885 99999998754431 122 33456889999999853111011 24567999999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEE-EEecCCeEEEecChh
Q 046786 186 ISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKIL-LLSSDGSSLYFGKGE 264 (604)
Q Consensus 186 vsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~-ll~~~G~~v~~G~~~ 264 (604)
++||++|+.+|++|||||||+|||+.++..+.+.|++++++ +|||+++|++. .+..++|+++ +| ++|+++..|+++
T Consensus 189 v~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-~tiii~tH~~~-~i~~~~dri~v~l-~~G~i~~~g~~~ 265 (285)
T PRK14254 189 LCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNMQ-QAARISDKTAVFL-TGGELVEFDDTD 265 (285)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEeCCHH-HHHhhcCEEEEEe-eCCEEEEeCCHH
Confidence 99999999999999999999999999999999999999864 89999999975 6778899975 56 899999999877
Q ss_pred hH
Q 046786 265 DV 266 (604)
Q Consensus 265 ~~ 266 (604)
++
T Consensus 266 ~~ 267 (285)
T PRK14254 266 KI 267 (285)
T ss_pred HH
Confidence 65
No 208
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=2e-40 Score=333.99 Aligned_cols=201 Identities=30% Similarity=0.472 Sum_probs=163.1
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----hccccEEEEecCCCCCC
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----EVKRRTGFVAQNNVFYP 124 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~ 124 (604)
+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |++|+|.++|.++.. ..++.++|++|++.+++
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~ 90 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD-----PTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD 90 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC-----CCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh
Confidence 569999999999999999999999999999999999985 579999999988642 34567999999998876
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHH-----HHHHHHHHc--CCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCC
Q 046786 125 HLTVAETLVFTALLRLPNSLKREEKVL-----HAEAVINQL--GLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPS 197 (604)
Q Consensus 125 ~lTv~e~l~f~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~ 197 (604)
.||+||+.+....+ ..++..+ .+.+.++.+ ++....+ +.++.|||||||||+||++|+.+|+
T Consensus 91 -~tv~e~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~LS~G~~qrv~la~al~~~p~ 159 (238)
T cd03249 91 -GTIAENIRYGKPDA-----TDEEVEEAAKKANIHDFIMSLPDGYDTLVG-----ERGSQLSGGQKQRIAIARALLRNPK 159 (238)
T ss_pred -hhHHHHhhccCCCC-----CHHHHHHHHHHcChHHHHHhhccccceeec-----cCCccCCHHHHHHHHHHHHHhcCCC
Confidence 69999998753211 1111110 122233333 3332222 4567999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHHHH
Q 046786 198 LLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVINY 269 (604)
Q Consensus 198 illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~~~ 269 (604)
+++|||||+|||+.++..+.+.|++++ +|+|||+++|++. .+. .+|++++| ++|++++.|+.+++.+.
T Consensus 160 llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~~-~~d~v~~l-~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 160 ILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TIR-NADLIAVL-QNGQVVEQGTHDELMAQ 227 (238)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HHh-hCCEEEEE-ECCEEEEeCCHHHHhhc
Confidence 999999999999999999999999997 7999999999986 454 79999999 89999999988776554
No 209
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=6.3e-40 Score=400.63 Aligned_cols=224 Identities=26% Similarity=0.424 Sum_probs=196.1
Q ss_pred hhheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh---
Q 046786 31 DMLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--- 107 (604)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--- 107 (604)
.+++..|+...+++ +++.+|+|||+.|++||++||+||||||||||+|+|+|..+ |++|+|.++|+++..
T Consensus 1936 ~~L~v~nLsK~Y~~--~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~-----ptsG~I~i~G~~i~~~~~ 2008 (2272)
T TIGR01257 1936 DILRLNELTKVYSG--TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT-----VTSGDATVAGKSILTNIS 2008 (2272)
T ss_pred ceEEEEEEEEEECC--CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEECCEECcchHH
Confidence 45666666555421 13679999999999999999999999999999999999985 679999999999842
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHH
Q 046786 108 EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRIS 187 (604)
Q Consensus 108 ~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvs 187 (604)
..++.+||+||++.+++.+||+|++.+.++++ +.++++.+++++++++.+||.+.+|++ +++|||||||||+
T Consensus 2009 ~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~---g~~~~~~~~~v~~lLe~lgL~~~~dk~-----~~~LSGGqKqRLs 2080 (2272)
T TIGR01257 2009 DVHQNMGYCPQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRL-----AGTYSGGNKRKLS 2080 (2272)
T ss_pred HHhhhEEEEeccccCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHhcCC-----hhhCCHHHHHHHH
Confidence 34678999999999999999999999877664 234445556788999999998887744 5699999999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 188 IGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 188 ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
||+||+.+|+|++|||||+|||+.++..+.+.|++++++|+|||+|||++. ++..+||++++| .+|+++..|+++++.
T Consensus 2081 lA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL-~~G~i~~~Gs~q~Lk 2158 (2272)
T TIGR01257 2081 TAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIM-VKGAFQCLGTIQHLK 2158 (2272)
T ss_pred HHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-ECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999999888999999999975 788999999999 899999999999998
Q ss_pred HHHH
Q 046786 268 NYFA 271 (604)
Q Consensus 268 ~~f~ 271 (604)
+.|.
T Consensus 2159 ~~~g 2162 (2272)
T TIGR01257 2159 SKFG 2162 (2272)
T ss_pred HHhC
Confidence 8775
No 210
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-40 Score=309.34 Aligned_cols=206 Identities=30% Similarity=0.541 Sum_probs=181.6
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCH
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTV 128 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv 128 (604)
+.+|+|+|++|.+||.++++||||||||||||+++|..+ |..|+|.+||++++.- ...-|.|+|++.++|.+||
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~-----P~~G~i~l~~r~i~gP-gaergvVFQ~~~LlPWl~~ 91 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT-----PSRGSIQLNGRRIEGP-GAERGVVFQNEALLPWLNV 91 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC-----cccceEEECCEeccCC-CccceeEeccCccchhhHH
Confidence 569999999999999999999999999999999999985 6799999999998631 1224899999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 046786 129 AETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGL 208 (604)
Q Consensus 129 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgL 208 (604)
.||+.|+.+++ ++.+.++.+++.+.+..+||.+..+ +++-+|||||||||.|||||+.+|++|+||||++.|
T Consensus 92 ~dNvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~-----~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAl 163 (259)
T COG4525 92 IDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEH-----KYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGAL 163 (259)
T ss_pred HHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccc-----cceEeecchHHHHHHHHHHhhcCcceEeecCchhhH
Confidence 99999999886 6788899999999999999998776 456699999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEec-CCeEEEecChhhHHHH
Q 046786 209 DSTMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSS-DGSSLYFGKGEDVINY 269 (604)
Q Consensus 209 D~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~-~G~~v~~G~~~~~~~~ 269 (604)
|..+++.+.++|-++.+ .|+.++++||+.. +..-+++++++|+. .||++..-+++=...|
T Consensus 164 Da~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~df~rR~ 225 (259)
T COG4525 164 DALTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPLDFARRY 225 (259)
T ss_pred HHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCCCHHHHh
Confidence 99999999999999876 5999999999986 45568999999942 4788887776633333
No 211
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=1.2e-39 Score=331.37 Aligned_cols=218 Identities=26% Similarity=0.412 Sum_probs=177.2
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEe-----CC
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQ-----FS 106 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~-----~~ 106 (604)
+++..|+...+ +++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ |++|+|.++|++ +.
T Consensus 3 ~l~~~~l~~~~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~~ 73 (253)
T TIGR02323 3 LLQVSGLSKSY----GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA-----PDHGTATYIMRSGAELELY 73 (253)
T ss_pred eEEEeeeEEEe----CCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEEecccccccccc
Confidence 34555655544 23568999999999999999999999999999999999985 579999999976 42
Q ss_pred h----h----ccccEEEEecCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccC
Q 046786 107 A----E----VKRRTGFVAQNNV--FYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLAR-CRNSIIGGRLV 175 (604)
Q Consensus 107 ~----~----~~~~i~yv~Q~~~--l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~ 175 (604)
. . .++.++|++|++. +.+.+|+.||+.+..... .. ....+..+.+.++++.+|+.+ ..+ +.+
T Consensus 74 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~~-~~~~~~~~~~~~~l~~l~l~~~~~~-----~~~ 146 (253)
T TIGR02323 74 QLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-GA-RHYGNIRAAAHDWLEEVEIDPTRID-----DLP 146 (253)
T ss_pred cCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-cc-cchHHHHHHHHHHHHHcCCChhhhh-----cCc
Confidence 1 1 2356999999974 456679999997643211 11 111233467889999999963 455 456
Q ss_pred CCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecC
Q 046786 176 RGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSD 254 (604)
Q Consensus 176 ~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~ 254 (604)
+.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++. .+...+|++++| ++
T Consensus 147 ~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~~l-~~ 224 (253)
T TIGR02323 147 RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLLVM-QQ 224 (253)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEE-EC
Confidence 799999999999999999999999999999999999999999999998764 899999999975 677789999999 89
Q ss_pred CeEEEecChhhHH
Q 046786 255 GSSLYFGKGEDVI 267 (604)
Q Consensus 255 G~~v~~G~~~~~~ 267 (604)
|+++..|+++++.
T Consensus 225 G~i~~~~~~~~~~ 237 (253)
T TIGR02323 225 GRVVESGLTDQVL 237 (253)
T ss_pred CEEEEECCHHHHh
Confidence 9999999887663
No 212
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-39 Score=333.47 Aligned_cols=224 Identities=22% Similarity=0.363 Sum_probs=178.4
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+.+.+. ++.+|+|+|+++++||+++|+|+|||||||||++|+|++++....|++|+|.++|+++..
T Consensus 24 ~l~~~~l~~~~~----~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 24 VFDTQNLNLWYG----EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred EEEEeeeEEEEC----CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 466667665442 356999999999999999999999999999999999987510001479999999998731
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHH
Q 046786 108 --EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKR 185 (604)
Q Consensus 108 --~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 185 (604)
..++.++|++|++.+++ .||+||+.++...+ ....++...+.+.+.++.+++.+...... ++.++.||||||||
T Consensus 100 ~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~l~~~~-~~~~~~LSgGe~qr 175 (271)
T PRK14238 100 VEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIH--GIKDKKTLDEIVEKSLRGAAIWDELKDRL-HDNAYGLSGGQQQR 175 (271)
T ss_pred HHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCcchHHHHH-hcCcccCCHHHHHH
Confidence 34678999999998887 49999999875432 11122223345677788776532111111 25577999999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhh
Q 046786 186 ISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGED 265 (604)
Q Consensus 186 vsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~ 265 (604)
++||++|+.+|++++|||||+|||+.+...+.+.|+++++ ++|||+++|++. .+.+.+|++++| ++|+++..|++++
T Consensus 176 v~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l-~~G~i~~~g~~~~ 252 (271)
T PRK14238 176 LCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFF-LNGYVNEYDDTDK 252 (271)
T ss_pred HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEE-ECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999976 799999999975 577889999999 8999999998876
Q ss_pred H
Q 046786 266 V 266 (604)
Q Consensus 266 ~ 266 (604)
+
T Consensus 253 ~ 253 (271)
T PRK14238 253 I 253 (271)
T ss_pred H
Confidence 5
No 213
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-40 Score=364.41 Aligned_cols=207 Identities=22% Similarity=0.320 Sum_probs=178.2
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-----hccccEEEEecCCCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-----EVKRRTGFVAQNNVF 122 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-----~~~~~i~yv~Q~~~l 122 (604)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ |++|+|.++|+++.. ..++.++|++|++.+
T Consensus 10 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~ 84 (491)
T PRK10982 10 GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ-----KDSGSILFQGKEIDFKSSKEALENGISMVHQELNL 84 (491)
T ss_pred CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCceEEEECCEECCCCCHHHHHhCCEEEEeccccc
Confidence 4579999999999999999999999999999999999985 579999999998742 235679999999988
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEe
Q 046786 123 YPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLD 202 (604)
Q Consensus 123 ~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLD 202 (604)
++.+||+||+.+............++..++++++++.+|+.+..+ +.+.+|||||||||+||++|+.+|++|+||
T Consensus 85 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgGq~qrv~lA~al~~~p~lllLD 159 (491)
T PRK10982 85 VLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPR-----AKVATLSVSQMQMIEIAKAFSYNAKIVIMD 159 (491)
T ss_pred ccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCcc-----CchhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 999999999987532110111133444567899999999987666 445699999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhH
Q 046786 203 EPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266 (604)
Q Consensus 203 EPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~ 266 (604)
|||+|||+.++..+.+.|++++++|+|||+++|++. .+...+|++++| ++|+++..|++++.
T Consensus 160 EPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l-~~G~i~~~~~~~~~ 221 (491)
T PRK10982 160 EPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITIL-RDGQWIATQPLAGL 221 (491)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEE-ECCEEEeecChhhC
Confidence 999999999999999999999888999999999975 677899999999 89999999987654
No 214
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.1e-39 Score=365.27 Aligned_cols=227 Identities=23% Similarity=0.394 Sum_probs=185.9
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+++.+......+.+|+|+|+++++||++||+||||||||||||+|+|.+++....|++|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 4666677666532222357999999999999999999999999999999999998631111369999999998742
Q ss_pred h---cc-ccEEEEecCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc---ccccccCccCCCc
Q 046786 108 E---VK-RRTGFVAQNNV--FYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARC---RNSIIGGRLVRGL 178 (604)
Q Consensus 108 ~---~~-~~i~yv~Q~~~--l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~---~~~~vg~~~~~~L 178 (604)
. .+ +.+|||+|++. +++.+|++|++.+...... ..+..+..++++++++.+||.+. .+ +.+++|
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~~~L 157 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR--GMRREAARGEILNCLDRVGIRQAAKRLT-----DYPHQL 157 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHh-----hCCccc
Confidence 1 22 47999999974 6777899999886543211 23445556788999999999753 34 456799
Q ss_pred CHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeE
Q 046786 179 SGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSS 257 (604)
Q Consensus 179 SgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~ 257 (604)
||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+..++|++++| ++|++
T Consensus 158 SgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri~~l-~~G~i 235 (529)
T PRK15134 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADRVAVM-QNGRC 235 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEEEEE-ECCEE
Confidence 999999999999999999999999999999999999999999999875 899999999986 577889999999 89999
Q ss_pred EEecChhhHH
Q 046786 258 LYFGKGEDVI 267 (604)
Q Consensus 258 v~~G~~~~~~ 267 (604)
++.|+++++.
T Consensus 236 ~~~g~~~~~~ 245 (529)
T PRK15134 236 VEQNRAATLF 245 (529)
T ss_pred EEeCCHHHHh
Confidence 9999987664
No 215
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-39 Score=336.48 Aligned_cols=220 Identities=23% Similarity=0.368 Sum_probs=177.8
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-----
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----- 107 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----- 107 (604)
++..|+.+.+ +++.+|+|+|+++++||+++|+|||||||||||++|+|+.+.....|++|+|.++|+++..
T Consensus 40 l~~~~l~~~~----~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 40 VVAKNFSIYY----GEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred EEEeeeEEEE----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 4444544433 2356999999999999999999999999999999999975310001379999999998632
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccCCCcCHHH
Q 046786 108 -EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLAR----CRNSIIGGRLVRGLSGGE 182 (604)
Q Consensus 108 -~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~~~~~LSgGe 182 (604)
..++.++|++|++.+++. ||.||+.+....+. ..+....++++.++++.+|+.+ ..+ +.+..|||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-----~~~~~LSgGq 187 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHG--INDKKQLEEIVEKSLRKAALWDEVSDRLD-----KNALGLSGGQ 187 (286)
T ss_pred HHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHhCCccchhhHhh-----CChhhCCHHH
Confidence 246689999999988875 99999998754321 1122333456788899998742 233 4567999999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecC
Q 046786 183 RKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGK 262 (604)
Q Consensus 183 rqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~ 262 (604)
|||++||++|+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|++. .+.+.+|++++| ++|+++..|+
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L-~~G~i~~~g~ 264 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFF-YEGVLVEHAP 264 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEE-ECCEEEEeCC
Confidence 9999999999999999999999999999999999999999975 689999999976 577889999999 8999999999
Q ss_pred hhhHH
Q 046786 263 GEDVI 267 (604)
Q Consensus 263 ~~~~~ 267 (604)
++++.
T Consensus 265 ~~~~~ 269 (286)
T PRK14275 265 TAQLF 269 (286)
T ss_pred HHHHH
Confidence 88763
No 216
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=2e-39 Score=329.52 Aligned_cols=221 Identities=28% Similarity=0.392 Sum_probs=177.4
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+.+.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.. ..|++|+|.++|.++..
T Consensus 7 ~l~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---~~~~~G~i~~~g~~~~~~~~~ 79 (252)
T CHL00131 7 ILEIKNLHASV----NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPA---YKILEGDILFKGESILDLEPE 79 (252)
T ss_pred eEEEEeEEEEe----CCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCc---CcCCCceEEECCEEcccCChh
Confidence 35555655543 23569999999999999999999999999999999999731 02579999999998743
Q ss_pred hccc-cEEEEecCCCCCCCCCHHHHHHHHHHhcCC----CCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCC-CcCH
Q 046786 108 EVKR-RTGFVAQNNVFYPHLTVAETLVFTALLRLP----NSLKREEKVLHAEAVINQLGLAR-CRNSIIGGRLVR-GLSG 180 (604)
Q Consensus 108 ~~~~-~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~----~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~-~LSg 180 (604)
..++ .++|++|++.+++.+|+.|++.+....... ......+..+++.++++.+|+.+ ..+ +.+. +|||
T Consensus 80 ~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~~LSg 154 (252)
T CHL00131 80 ERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLS-----RNVNEGFSG 154 (252)
T ss_pred hhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhc-----cccccCCCH
Confidence 2222 488999999999999999999875432110 01122233456788999999973 444 3344 5999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhh-cCeEEEEecCCeEEE
Q 046786 181 GERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYM-FNKILLLSSDGSSLY 259 (604)
Q Consensus 181 GerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~-~d~v~ll~~~G~~v~ 259 (604)
|||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+... +|++++| ++|++++
T Consensus 155 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~-~~~~~~~d~i~~l-~~G~i~~ 232 (252)
T CHL00131 155 GEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR-LLDYIKPDYVHVM-QNGKIIK 232 (252)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhhhCCEEEEE-eCCEEEE
Confidence 9999999999999999999999999999999999999999999877999999999976 35455 8999999 8999999
Q ss_pred ecChhhH
Q 046786 260 FGKGEDV 266 (604)
Q Consensus 260 ~G~~~~~ 266 (604)
.|+++.+
T Consensus 233 ~~~~~~~ 239 (252)
T CHL00131 233 TGDAELA 239 (252)
T ss_pred ecChhhh
Confidence 9998843
No 217
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-40 Score=372.90 Aligned_cols=222 Identities=26% Similarity=0.394 Sum_probs=187.0
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeC------
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQF------ 105 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~------ 105 (604)
+++..|+++.+....+.+.+|+||||++++||++||+||||||||||+|+|+|+++ |++|+|.++|..+
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~-----p~~G~i~~~g~~~~~~~~~ 86 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE-----QAGGLVQCDKMLLRRRSRQ 86 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC-----CCCeEEEECCEEecccccc
Confidence 57777777766433334579999999999999999999999999999999999985 5689999998643
Q ss_pred -------Ch----hcc-ccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc---cccc
Q 046786 106 -------SA----EVK-RRTGFVAQNN--VFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLAR---CRNS 168 (604)
Q Consensus 106 -------~~----~~~-~~i~yv~Q~~--~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~ 168 (604)
.. ..+ +.+|||+|++ .+++.+||.||+.++.+... ..+..+.++++.++++.+||.+ ..+
T Consensus 87 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~- 163 (623)
T PRK10261 87 VIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEAQTILS- 163 (623)
T ss_pred ccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChhhHHh-
Confidence 11 122 4799999997 68889999999999865421 2345555678899999999964 234
Q ss_pred cccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCe
Q 046786 169 IIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNK 247 (604)
Q Consensus 169 ~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~ 247 (604)
+++.+|||||||||+||+||+.+|++|||||||+|||+.++..+.++|++++++ |+|||++||++. .+.+++|+
T Consensus 164 ----~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~~~~~adr 238 (623)
T PRK10261 164 ----RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-VVAEIADR 238 (623)
T ss_pred ----CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCE
Confidence 567799999999999999999999999999999999999999999999999865 999999999975 67789999
Q ss_pred EEEEecCCeEEEecChhhHH
Q 046786 248 ILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 248 v~ll~~~G~~v~~G~~~~~~ 267 (604)
+++| ++|+++..|+++++.
T Consensus 239 i~vl-~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 239 VLVM-YQGEAVETGSVEQIF 257 (623)
T ss_pred EEEe-eCCeecccCCHHHhh
Confidence 9999 899999999987763
No 218
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=5.9e-40 Score=319.47 Aligned_cols=177 Identities=33% Similarity=0.550 Sum_probs=152.9
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh------hccccEEEEecCCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA------EVKRRTGFVAQNNV 121 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~------~~~~~i~yv~Q~~~ 121 (604)
++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ |++|+|.++|+++.. ..++.++|++|++.
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 78 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR-----PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPD 78 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceeEEECCEEccccccchHHHHhhEEEEecChh
Confidence 4569999999999999999999999999999999999985 579999999998731 24567999999973
Q ss_pred --CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeE
Q 046786 122 --FYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLL 199 (604)
Q Consensus 122 --l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~il 199 (604)
++ ..||+||+.+..... ..+.++..++++++++.+||.+..+ +.++.||||||||++||++|+.+|+++
T Consensus 79 ~~~~-~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~laral~~~p~ll 149 (190)
T TIGR01166 79 DQLF-AADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRE-----RPTHCLSGGEKKRVAIAGAVAMRPDVL 149 (190)
T ss_pred hccc-cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhh-----CChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 44 479999999865432 2334444567889999999987666 446699999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 046786 200 FLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPA 238 (604)
Q Consensus 200 lLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~ 238 (604)
+|||||+|||+.++..+.+.|++++++|+|||+++|++.
T Consensus 150 llDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 150 LLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 999999999999999999999999888999999999975
No 219
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=1.7e-39 Score=317.46 Aligned_cols=170 Identities=56% Similarity=0.920 Sum_probs=154.6
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCCccccEEEECCEeCCh-hccccEEEEecCCCCCCC
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRL--SNGKDTVTQGHITYNGKQFSA-EVKRRTGFVAQNNVFYPH 125 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~--~~~~~~~~~G~I~~~G~~~~~-~~~~~i~yv~Q~~~l~~~ 125 (604)
+.+|+|+|+++++||+++|+||||||||||+++|+|+. + |++|+|.++|+++.. ..++.++|++|++.+++.
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~-----~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~ 96 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL-----GVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPT 96 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-----CCceEEEECCEeCchHhhhheEEEccCcccCCCC
Confidence 56999999999999999999999999999999999998 5 579999999998864 456789999999999999
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 046786 126 LTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPT 205 (604)
Q Consensus 126 lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPt 205 (604)
+|++||+.+..... .||||||||++||++|+.+|++++|||||
T Consensus 97 ~t~~~~i~~~~~~~-------------------------------------~LS~G~~qrv~laral~~~p~illlDEP~ 139 (194)
T cd03213 97 LTVRETLMFAAKLR-------------------------------------GLSGGERKRVSIALELVSNPSLLFLDEPT 139 (194)
T ss_pred CcHHHHHHHHHHhc-------------------------------------cCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 99999997643110 69999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 206 SGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 206 sgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
+|||+.++..+.+.|++++++|+|+|+++|++..++.+.+|++++| ++|++++.|
T Consensus 140 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l-~~G~i~~~~ 194 (194)
T cd03213 140 SGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLL-SQGRVIYFG 194 (194)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEE-eCCEEEecC
Confidence 9999999999999999998779999999999875678899999999 899998764
No 220
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-39 Score=333.03 Aligned_cols=223 Identities=22% Similarity=0.357 Sum_probs=178.8
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+.+.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++....+++|+|.++|+++..
T Consensus 20 ~l~~~nl~~~~----~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 20 VFEVEGVKVFY----GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred eEEEeeEEEEe----CCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 46666665544 2356999999999999999999999999999999999987521101358999999998731
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHH
Q 046786 108 --EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKR 185 (604)
Q Consensus 108 --~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 185 (604)
..++.++|++|+..+++. ||.||+.+....+ .... ...+.+++.++.+++........ ++.+..||||||||
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~---~~~~-~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LSgGq~qr 169 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRAN---GYKG-NLDELVEDSLRRAAIWEEVKDKL-KEKGTALSGGQQQR 169 (274)
T ss_pred hHHHhhcEEEEccCCccccc-cHHHHHHhHHHhc---CchH-HHHHHHHHHHHHcccchhhHHHh-cCCcccCCHHHHHH
Confidence 346789999999988875 9999998865432 1111 22345677888888742211111 25567999999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEec---------CCe
Q 046786 186 ISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSS---------DGS 256 (604)
Q Consensus 186 vsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~---------~G~ 256 (604)
|+||++|+.+|++|||||||+|||+.+...+.+.|+++++ ++|||+++|++. .+.+.+|++++| + +|+
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l-~~~~~~~~~~~G~ 246 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFF-NTEIDEYGKRRGK 246 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEE-ecccccccccCce
Confidence 9999999999999999999999999999999999999975 689999999985 678899999999 6 899
Q ss_pred EEEecChhhHH
Q 046786 257 SLYFGKGEDVI 267 (604)
Q Consensus 257 ~v~~G~~~~~~ 267 (604)
+++.|+++++.
T Consensus 247 ~~~~g~~~~~~ 257 (274)
T PRK14265 247 LVEFSPTEQMF 257 (274)
T ss_pred EEEeCCHHHHH
Confidence 99999998774
No 221
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-39 Score=328.34 Aligned_cols=224 Identities=22% Similarity=0.381 Sum_probs=180.4
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-----
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----- 107 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----- 107 (604)
++..|+...+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+.....|++|+|.++|+++..
T Consensus 4 l~~~~v~~~~----~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 4 IEVENLNTYF----DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEeEEEEe----CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 3444554433 2456999999999999999999999999999999999986311101368999999998742
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHH
Q 046786 108 -EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRI 186 (604)
Q Consensus 108 -~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 186 (604)
..++.++|++|++.+++. |+.||+.+..... .....+..++++.+.++.+|+.+...... ++.+..||||||||+
T Consensus 80 ~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~Gq~qrv 155 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIH--GEDDEDFIEERVEESLKAAALWDEVKDKL-DKSALGLSGGQQQRL 155 (250)
T ss_pred HHHhhheEEEecCCccCcc-hHHHHHHhHHhhc--CCCCHHHHHHHHHHHHHHcCCchhHHHHH-hCCcccCCHHHHHHH
Confidence 346789999999988885 9999998764322 11223334567888999999854322122 355779999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhH
Q 046786 187 SIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266 (604)
Q Consensus 187 sia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~ 266 (604)
+||++|+.+|++++|||||+|||+.+...+.+.|+++++ |+|||+++|++. .+...+|+++++ ++|++++.|+++++
T Consensus 156 ~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l-~~G~i~~~g~~~~~ 232 (250)
T PRK14266 156 CIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFF-LNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEE-ECCeEEEeCCHHHH
Confidence 999999999999999999999999999999999999965 899999999975 678889999999 89999999998876
Q ss_pred H
Q 046786 267 I 267 (604)
Q Consensus 267 ~ 267 (604)
.
T Consensus 233 ~ 233 (250)
T PRK14266 233 F 233 (250)
T ss_pred H
Confidence 3
No 222
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.2e-39 Score=362.67 Aligned_cols=219 Identities=24% Similarity=0.377 Sum_probs=181.8
Q ss_pred eeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-----h
Q 046786 34 KKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-----E 108 (604)
Q Consensus 34 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-----~ 108 (604)
+..|+.+.+ +++.+|+|+|+++++||+++|+||||||||||||+|+|+.++. |++|+|.++|+++.. .
T Consensus 3 ~i~~l~~~~----~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~---~~~G~i~~~g~~~~~~~~~~~ 75 (500)
T TIGR02633 3 EMKGIVKTF----GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG---TWDGEIYWSGSPLKASNIRDT 75 (500)
T ss_pred EEEeEEEEe----CCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCCeEEEECCEECCCCCHHHH
Confidence 444555443 3456999999999999999999999999999999999987521 369999999998743 1
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPN-SLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRIS 187 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvs 187 (604)
.++.+|||+|++.+++.+||+||+.+........ ....++..++++++++.+||.+..+ ++.+++|||||||||+
T Consensus 76 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----~~~~~~LSgG~~qrv~ 151 (500)
T TIGR02633 76 ERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNV----TRPVGDYGGGQQQLVE 151 (500)
T ss_pred HhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcc----cCchhhCCHHHHHHHH
Confidence 3457999999999999999999998865332111 1233344567889999999976542 1346699999999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhh
Q 046786 188 IGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGED 265 (604)
Q Consensus 188 ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~ 265 (604)
||++|+.+|++|+|||||+|||+.+...+.+.|++++++|+|||++||++. .+...+|++++| ++|++++.|++++
T Consensus 152 iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l-~~G~i~~~~~~~~ 227 (500)
T TIGR02633 152 IAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVI-RDGQHVATKDMST 227 (500)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEE-eCCeEeeecCccc
Confidence 999999999999999999999999999999999999888999999999975 677899999999 8999999988754
No 223
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-39 Score=362.13 Aligned_cols=216 Identities=24% Similarity=0.345 Sum_probs=181.3
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+.+.+ +++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ |++|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~i~~~~~~ 74 (501)
T PRK11288 4 YLSFDGIGKTF----PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ-----PDAGSILIDGQEMRFASTT 74 (501)
T ss_pred eEEEeeeEEEE----CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEECCCCCHH
Confidence 35555655544 23569999999999999999999999999999999999985 579999999998742
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHH
Q 046786 108 -EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRI 186 (604)
Q Consensus 108 -~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 186 (604)
..++.+|||+|++.+++.+||.||+.++............+..++++++++.+||.+..+ +.+.+|||||||||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgGq~qrv 149 (501)
T PRK11288 75 AALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPD-----TPLKYLSIGQRQMV 149 (501)
T ss_pred HHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcC-----CchhhCCHHHHHHH
Confidence 245689999999999999999999998542111111233444567889999999986655 45669999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecCh
Q 046786 187 SIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKG 263 (604)
Q Consensus 187 sia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~ 263 (604)
+||++|+.+|++|+|||||+|||+.+...+.+.|++++++|+|||++||++. .+..++|++++| ++|+++..++.
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l-~~G~i~~~~~~ 224 (501)
T PRK11288 150 EIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVF-KDGRYVATFDD 224 (501)
T ss_pred HHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-ECCEEEeecCc
Confidence 9999999999999999999999999999999999999888999999999986 677889999999 89999876653
No 224
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-39 Score=332.01 Aligned_cols=223 Identities=24% Similarity=0.391 Sum_probs=179.0
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCC-----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS----- 106 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~----- 106 (604)
+++..|+.+.+ +.+.+|+|+|+++++||+++|+||||||||||||+|+|+.++....|++|+|.++|+++.
T Consensus 10 ~l~i~~v~~~~----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 85 (264)
T PRK14243 10 VLRTENLNVYY----GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVD 85 (264)
T ss_pred EEEEeeeEEEE----CCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccC
Confidence 45556665544 235699999999999999999999999999999999998642110136899999998863
Q ss_pred -hhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHH
Q 046786 107 -AEVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKR 185 (604)
Q Consensus 107 -~~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 185 (604)
...++.++|++|++.+++ .|+.||+.+....+ ... .+..++++++++.+++.+..+... ++.+..||||||||
T Consensus 86 ~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LSgGq~qr 159 (264)
T PRK14243 86 PVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARIN---GYK-GDMDELVERSLRQAALWDEVKDKL-KQSGLSLSGGQQQR 159 (264)
T ss_pred hHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhc---Ccc-hHHHHHHHHHHHHhCchhhHHHHh-cCCcccCCHHHHHH
Confidence 134667999999998887 49999998865432 111 223345677888888753211111 25577999999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEec---------CCe
Q 046786 186 ISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSS---------DGS 256 (604)
Q Consensus 186 vsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~---------~G~ 256 (604)
++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.+|++++| + +|+
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l-~~~~~~~~~~~g~ 236 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFF-NVELTEGGGRYGY 236 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEE-ecccccccccCce
Confidence 9999999999999999999999999999999999999976 589999999975 688999999999 6 799
Q ss_pred EEEecChhhHH
Q 046786 257 SLYFGKGEDVI 267 (604)
Q Consensus 257 ~v~~G~~~~~~ 267 (604)
++..|+++++.
T Consensus 237 i~~~~~~~~~~ 247 (264)
T PRK14243 237 LVEFDRTEKIF 247 (264)
T ss_pred EEEeCCHHHHH
Confidence 99999988774
No 225
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.4e-39 Score=320.55 Aligned_cols=197 Identities=27% Similarity=0.396 Sum_probs=164.7
Q ss_pred eeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh---hcc
Q 046786 34 KKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---EVK 110 (604)
Q Consensus 34 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---~~~ 110 (604)
+..|++..+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|.++ |++|+|.++|+++.. ..+
T Consensus 3 ~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~v~~~g~~~~~~~~~~~ 73 (204)
T PRK13538 3 EARNLACER----DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR-----PDAGEVLWQGEPIRRQRDEYH 73 (204)
T ss_pred EEEEEEEEE----CCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEEcccchHHhh
Confidence 444554443 23569999999999999999999999999999999999985 579999999998742 456
Q ss_pred ccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHH
Q 046786 111 RRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQ 190 (604)
Q Consensus 111 ~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~ 190 (604)
+.++|++|++.+++.+|+.||+.+..... .. ...++++++++.+||.+..| +.++.||||||||++||+
T Consensus 74 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~---~~---~~~~~~~~~l~~~gl~~~~~-----~~~~~LS~G~~qrl~la~ 142 (204)
T PRK13538 74 QDLLYLGHQPGIKTELTALENLRFYQRLH---GP---GDDEALWEALAQVGLAGFED-----VPVRQLSAGQQRRVALAR 142 (204)
T ss_pred hheEEeCCccccCcCCcHHHHHHHHHHhc---Cc---cHHHHHHHHHHHcCCHHHhh-----CChhhcCHHHHHHHHHHH
Confidence 78999999999999999999999875432 11 22356889999999987666 446699999999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEE
Q 046786 191 ELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLL 251 (604)
Q Consensus 191 ~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll 251 (604)
+|+++|++++|||||+|||+.+...+.+.|++++++|+|||+++|++. .+....++++.+
T Consensus 143 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 143 LWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh-hhccCCceEEec
Confidence 999999999999999999999999999999999877899999999986 454544455444
No 226
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-39 Score=333.54 Aligned_cols=218 Identities=22% Similarity=0.369 Sum_probs=175.5
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhcc-c
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVK-R 111 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~-~ 111 (604)
++..|+.+.+. +++.+|+|+|+++++||+++|+||||||||||||+|+|+++ |++|+|.++|+++....+ +
T Consensus 7 l~~~~l~~~~~---~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~~~~~~ 78 (272)
T PRK15056 7 IVVNDVTVTWR---NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR-----LASGKISILGQPTRQALQKN 78 (272)
T ss_pred EEEEeEEEEec---CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEhHHhhccc
Confidence 45556555442 23569999999999999999999999999999999999985 579999999998754333 4
Q ss_pred cEEEEecCCCCC--CCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHH
Q 046786 112 RTGFVAQNNVFY--PHLTVAETLVFTALLRLP-NSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISI 188 (604)
Q Consensus 112 ~i~yv~Q~~~l~--~~lTv~e~l~f~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsi 188 (604)
.++|++|++.+. ...+++|++.++...... .........++++++++.+||.+..++ .+..||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LSgG~~qrv~l 153 (272)
T PRK15056 79 LVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHR-----QIGELSGGQKKRVFL 153 (272)
T ss_pred eEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcC-----CcccCCHHHHHHHHH
Confidence 699999997652 234789988654211000 011122334567889999999877764 455899999999999
Q ss_pred HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhH
Q 046786 189 GQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266 (604)
Q Consensus 189 a~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~ 266 (604)
|++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.+|+++++ +|++++.|+++++
T Consensus 154 araL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~--~G~i~~~g~~~~~ 228 (272)
T PRK15056 154 ARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV--KGTVLASGPTETT 228 (272)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE--CCEEEeecCHHhc
Confidence 99999999999999999999999999999999999878999999999975 677899998665 6999999988765
No 227
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.9e-39 Score=363.37 Aligned_cols=222 Identities=29% Similarity=0.469 Sum_probs=184.6
Q ss_pred hheeeeEEEEEeccc-------cccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEe
Q 046786 32 MLKKVNMLVIIKNSD-------EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQ 104 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~-------~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~ 104 (604)
+++..|+++.+.... +++.+|+|+|+++++||+++|+||||||||||+|+|+|+++ ++|+|.++|++
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~------~~G~i~~~g~~ 348 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN------SQGEIWFDGQP 348 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC------CCcEEEECCEE
Confidence 466667666553211 23579999999999999999999999999999999999873 48999999988
Q ss_pred CCh-------hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcc
Q 046786 105 FSA-------EVKRRTGFVAQNN--VFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLA-RCRNSIIGGRL 174 (604)
Q Consensus 105 ~~~-------~~~~~i~yv~Q~~--~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~ 174 (604)
+.. .+++.++||+|++ .+++.+||+||+.++...+. ...+..+.+++++++++.+||. +..+ +.
T Consensus 349 i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~ 422 (529)
T PRK15134 349 LHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQ-PTLSAAQREQQVIAVMEEVGLDPETRH-----RY 422 (529)
T ss_pred ccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhcc-ccCChHHHHHHHHHHHHHcCCCHHHHh-----cC
Confidence 742 1356799999996 47888999999998754321 1123344456788999999997 3455 45
Q ss_pred CCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEec
Q 046786 175 VRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSS 253 (604)
Q Consensus 175 ~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~ 253 (604)
+++|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||++. .+.+++|++++| +
T Consensus 423 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l-~ 500 (529)
T PRK15134 423 PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVL-R 500 (529)
T ss_pred CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEE-E
Confidence 6799999999999999999999999999999999999999999999999875 899999999975 577899999999 8
Q ss_pred CCeEEEecChhhHH
Q 046786 254 DGSSLYFGKGEDVI 267 (604)
Q Consensus 254 ~G~~v~~G~~~~~~ 267 (604)
+|+++..|+++++.
T Consensus 501 ~G~i~~~~~~~~~~ 514 (529)
T PRK15134 501 QGEVVEQGDCERVF 514 (529)
T ss_pred CCEEEEEcCHHHHh
Confidence 99999999887764
No 228
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-39 Score=327.84 Aligned_cols=222 Identities=24% Similarity=0.463 Sum_probs=179.1
Q ss_pred hhheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCcccc------EEEECCEe
Q 046786 31 DMLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQG------HITYNGKQ 104 (604)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G------~I~~~G~~ 104 (604)
.++...|+.+.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ |++| ++.++|++
T Consensus 9 ~~i~~~~~~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~-----~~~G~v~~~G~~~~~g~~ 79 (257)
T PRK14246 9 DVFNISRLYLYI----NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE-----IYDSKIKVDGKVLYFGKD 79 (257)
T ss_pred hheeeeeEEEec----CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCcCceeEcCEEEECCcc
Confidence 345666655543 45679999999999999999999999999999999999875 3455 45455555
Q ss_pred CCh----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCH
Q 046786 105 FSA----EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSG 180 (604)
Q Consensus 105 ~~~----~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 180 (604)
+.. ..++.++|++|++.+++.+|++||+.+..... ....+++..+++.++++.+++.+...... ++.++.|||
T Consensus 80 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~ 156 (257)
T PRK14246 80 IFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSH--GIKEKREIKKIVEECLRKVGLWKEVYDRL-NSPASQLSG 156 (257)
T ss_pred cccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCCccchhhh-cCCcccCCH
Confidence 421 34678999999999999999999999875432 11233444567889999999964211111 245679999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEe
Q 046786 181 GERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYF 260 (604)
Q Consensus 181 GerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~ 260 (604)
|||||++||++|+.+|++++|||||+|||+.+...+.+.|+++++ +.|||+++|++. .+...+|++++| ++|+++..
T Consensus 157 G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l-~~g~i~~~ 233 (257)
T PRK14246 157 GQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFL-YNGELVEW 233 (257)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEE-ECCEEEEE
Confidence 999999999999999999999999999999999999999999975 699999999975 677899999999 89999999
Q ss_pred cChhhHH
Q 046786 261 GKGEDVI 267 (604)
Q Consensus 261 G~~~~~~ 267 (604)
|+++++.
T Consensus 234 g~~~~~~ 240 (257)
T PRK14246 234 GSSNEIF 240 (257)
T ss_pred CCHHHHH
Confidence 9887664
No 229
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-39 Score=336.50 Aligned_cols=227 Identities=25% Similarity=0.404 Sum_probs=179.7
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
++...|+.+.+ +++.+|+|+|+++++||+++|+|||||||||||++|+|++++....|++|+|.++|+++..
T Consensus 45 ~l~i~nl~~~~----~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 45 KLSVEDLDVYY----GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred eEEEEEEEEEe----CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 34555555443 2356999999999999999999999999999999999987521101479999999998742
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCC---------CCC-HHHHHHHHHHHHHHcCCCccccccccCccC
Q 046786 108 --EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPN---------SLK-REEKVLHAEAVINQLGLARCRNSIIGGRLV 175 (604)
Q Consensus 108 --~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~---------~~~-~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 175 (604)
..++.++|++|++.+++ .||+||+.+........ ... .+...+++.++++.+++.+...+.. ++.+
T Consensus 121 ~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~ 198 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL-DDNA 198 (305)
T ss_pred HHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh-cCcc
Confidence 34568999999998887 49999999875432100 011 2233456888999998853222222 2567
Q ss_pred CCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeE-EEEecC
Q 046786 176 RGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKI-LLLSSD 254 (604)
Q Consensus 176 ~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v-~ll~~~ 254 (604)
+.||||||||++||++|+++|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+..++|++ ++| ++
T Consensus 199 ~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d~i~~~l-~~ 275 (305)
T PRK14264 199 LGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISDQTAVFL-TG 275 (305)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcCEEEEEe-cC
Confidence 89999999999999999999999999999999999999999999999987 489999999985 577889997 467 89
Q ss_pred CeEEEecChhhHH
Q 046786 255 GSSLYFGKGEDVI 267 (604)
Q Consensus 255 G~~v~~G~~~~~~ 267 (604)
|+++..|+++++.
T Consensus 276 G~i~~~g~~~~~~ 288 (305)
T PRK14264 276 GELVEYDDTDKIF 288 (305)
T ss_pred CEEEEeCCHHHHH
Confidence 9999999987653
No 230
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.1e-40 Score=328.49 Aligned_cols=200 Identities=29% Similarity=0.463 Sum_probs=162.7
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----hccccEEEEecCCCCCC
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----EVKRRTGFVAQNNVFYP 124 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~ 124 (604)
+.+|+|+|+++++||+++|+||||||||||||+|+|+.+ |++|+|.++|.++.. ..++.++|++|++.+++
T Consensus 16 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~ 90 (229)
T cd03254 16 KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD-----PQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFS 90 (229)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhh
Confidence 469999999999999999999999999999999999985 569999999988742 35677999999998887
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCccCCCcCHHHHHHHHHHHHHhhCCC
Q 046786 125 HLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRN-------SIIGGRLVRGLSGGERKRISIGQELLINPS 197 (604)
Q Consensus 125 ~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~vg~~~~~~LSgGerqRvsia~~L~~~p~ 197 (604)
. |++||+.+.... ... ..+.+.++.+++.+..+ +.. ++.++.|||||||||+||++|+.+|+
T Consensus 91 ~-tv~~~~~~~~~~-----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 91 G-TIMENIRLGRPN-----ATD----EEVIEAAKEAGAHDFIMKLPNGYDTVL-GENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred h-HHHHHHhccCCC-----CCH----HHHHHHHHHhChHHHHHhCcccccCHh-hcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 5 999999875211 111 12333344444432221 111 24567999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHHH
Q 046786 198 LLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVIN 268 (604)
Q Consensus 198 illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~~ 268 (604)
+++|||||+|||+.++..+.+.|++++ +|+|||++||++. .+ ..+|++++| ++|++++.|+.+++.+
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~i~~l-~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TI-KNADKILVL-DDGKIIEEGTHDELLA 226 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEE-eCCeEEEeCCHHHHHh
Confidence 999999999999999999999999996 4899999999986 44 459999999 8999999998776543
No 231
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2.2e-39 Score=362.11 Aligned_cols=220 Identities=28% Similarity=0.432 Sum_probs=182.4
Q ss_pred hheeeeEEEEEec-cccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEEC-CEe---CC
Q 046786 32 MLKKVNMLVIIKN-SDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYN-GKQ---FS 106 (604)
Q Consensus 32 ~~~~~~~~~~~~~-~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~-G~~---~~ 106 (604)
+++..|+.+.+.. ..+.+.+|+|+||++++||+++|+||||||||||||+|+|+++ |++|+|.++ |.+ +.
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~g~~~~~~~ 353 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE-----PTSGEVNVRVGDEWVDMT 353 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEEecCCcccccc
Confidence 4666666665532 1123569999999999999999999999999999999999985 579999996 642 21
Q ss_pred h-------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-----cccccccCcc
Q 046786 107 A-------EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLAR-----CRNSIIGGRL 174 (604)
Q Consensus 107 ~-------~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~~~vg~~~ 174 (604)
. ..++.+||++|++.+++.+||.||+.+...+. .+.++.++++.++++.+||.+ ..+ ++
T Consensus 354 ~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~ 424 (520)
T TIGR03269 354 KPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILD-----KY 424 (520)
T ss_pred ccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhh-----CC
Confidence 1 23457999999998999999999998764321 223334467889999999975 234 55
Q ss_pred CCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEec
Q 046786 175 VRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSS 253 (604)
Q Consensus 175 ~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~ 253 (604)
+++|||||||||+||++|+.+|++|||||||+|||+.+...+++.|++++++ |.|||++||++. .+..++|++++| +
T Consensus 425 ~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l-~ 502 (520)
T TIGR03269 425 PDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALM-R 502 (520)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEE-E
Confidence 6799999999999999999999999999999999999999999999999864 899999999985 678899999999 8
Q ss_pred CCeEEEecChhhHH
Q 046786 254 DGSSLYFGKGEDVI 267 (604)
Q Consensus 254 ~G~~v~~G~~~~~~ 267 (604)
+|+++..|+++++.
T Consensus 503 ~G~i~~~g~~~~~~ 516 (520)
T TIGR03269 503 DGKIVKIGDPEEIV 516 (520)
T ss_pred CCEEEEECCHHHHH
Confidence 99999999987764
No 232
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=3.6e-39 Score=360.45 Aligned_cols=219 Identities=29% Similarity=0.438 Sum_probs=181.3
Q ss_pred eeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEEC-------------
Q 046786 35 KVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYN------------- 101 (604)
Q Consensus 35 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~------------- 101 (604)
..|+++.+ +++.+|+|+|+++++||+++|+||||||||||||+|+|+.+. .|++|+|.++
T Consensus 3 ~~~l~~~~----~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~---~p~~G~i~~~~~~~~~~~~~~~~ 75 (520)
T TIGR03269 3 VKNLTKKF----DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQY---EPTSGRIIYHVALCEKCGYVERP 75 (520)
T ss_pred EEEEEEEE----CCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccC---CCCceEEEEeccccccccccccc
Confidence 34554443 345799999999999999999999999999999999998620 1569999997
Q ss_pred ----------CEeC----------Ch----hccccEEEEecC-CCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 046786 102 ----------GKQF----------SA----EVKRRTGFVAQN-NVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAV 156 (604)
Q Consensus 102 ----------G~~~----------~~----~~~~~i~yv~Q~-~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~ 156 (604)
|.++ .. ..++.++||+|+ +.+++.+||+|++.+..... ..+.++..+++.++
T Consensus 76 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~ 152 (520)
T TIGR03269 76 SKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEAVGRAVDL 152 (520)
T ss_pred cccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 3221 01 235679999997 67888899999999875432 23344555688999
Q ss_pred HHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEec
Q 046786 157 INQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAE-GGRTILMTIH 235 (604)
Q Consensus 157 l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~-~g~tvi~~~H 235 (604)
++.+||.+..+ +.+++|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++ .|+|||+++|
T Consensus 153 l~~~gl~~~~~-----~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtH 227 (520)
T TIGR03269 153 IEMVQLSHRIT-----HIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSH 227 (520)
T ss_pred HHHcCChhhhh-----cCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 99999987666 45679999999999999999999999999999999999999999999999976 4999999999
Q ss_pred CCchHHHhhcCeEEEEecCCeEEEecChhhHHHHH
Q 046786 236 QPASSLFYMFNKILLLSSDGSSLYFGKGEDVINYF 270 (604)
Q Consensus 236 q~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~~~f 270 (604)
++. .+.+.+|++++| ++|++++.|+++++.+.+
T Consensus 228 d~~-~~~~~~d~i~~l-~~G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 228 WPE-VIEDLSDKAIWL-ENGEIKEEGTPDEVVAVF 260 (520)
T ss_pred CHH-HHHHhcCEEEEE-eCCEEeeecCHHHHHHHH
Confidence 975 577899999999 899999999988876543
No 233
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=6.1e-39 Score=325.10 Aligned_cols=228 Identities=31% Similarity=0.405 Sum_probs=177.0
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~ 108 (604)
++..|+.+.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+. +|++|+|.++|+++.. .
T Consensus 2 i~~~nl~~~~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~~~G~i~~~g~~~~~~~~~~ 74 (248)
T PRK09580 2 LSIKDLHVSV----EDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDY---EVTGGTVEFKGKDLLELSPED 74 (248)
T ss_pred eEEEEEEEEe----CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccC---CCCceEEEECCCccccCCHHH
Confidence 3445554443 235699999999999999999999999999999999998520 2579999999987642 2
Q ss_pred -ccccEEEEecCCCCCCCCCHHHHHHHHHH-hcC--CC-CCCHHHHHHHHHHHHHHcCCC-ccccccccCccC-CCcCHH
Q 046786 109 -VKRRTGFVAQNNVFYPHLTVAETLVFTAL-LRL--PN-SLKREEKVLHAEAVINQLGLA-RCRNSIIGGRLV-RGLSGG 181 (604)
Q Consensus 109 -~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~-~~~--~~-~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~-~~LSgG 181 (604)
.++.++|++|++.+++.+|+.+++.+... .+. .. .....+..+.+++.++.+++. +..++ .+ +.||||
T Consensus 75 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~~LS~G 149 (248)
T PRK09580 75 RAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTR-----SVNVGFSGG 149 (248)
T ss_pred HhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhccc-----CCCCCCCHH
Confidence 23569999999998888888777654321 110 00 011223345678899999995 33332 23 379999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhh-cCeEEEEecCCeEEEe
Q 046786 182 ERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYM-FNKILLLSSDGSSLYF 260 (604)
Q Consensus 182 erqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~-~d~v~ll~~~G~~v~~ 260 (604)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++.|+|||++||++. .+... +|++++| ++|++++.
T Consensus 150 ~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l-~~g~i~~~ 227 (248)
T PRK09580 150 EKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVL-YQGRIVKS 227 (248)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEE-ECCeEEEe
Confidence 999999999999999999999999999999999999999999887899999999976 45555 8999999 89999999
Q ss_pred cChhhHHHHHHhCCC
Q 046786 261 GKGEDVINYFAGIGY 275 (604)
Q Consensus 261 G~~~~~~~~f~~~g~ 275 (604)
|+++.+ ..+...++
T Consensus 228 g~~~~~-~~~~~~~~ 241 (248)
T PRK09580 228 GDFTLV-KQLEEQGY 241 (248)
T ss_pred CCHHHH-HHHHhcCC
Confidence 998855 34444433
No 234
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=3e-39 Score=322.75 Aligned_cols=194 Identities=27% Similarity=0.400 Sum_probs=164.1
Q ss_pred cccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCC
Q 046786 45 SDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYP 124 (604)
Q Consensus 45 ~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~ 124 (604)
+++++.+|+|+|+++++||+++|+||||||||||+++|+|..+ |++|+|.++|+++.. ..+...+.+
T Consensus 31 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~--------~~~~~~~~~ 97 (224)
T cd03220 31 EVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP-----PDSGTVTVRGRVSSL--------LGLGGGFNP 97 (224)
T ss_pred hcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEchh--------hcccccCCC
Confidence 3455779999999999999999999999999999999999875 579999999987531 111234567
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 046786 125 HLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEP 204 (604)
Q Consensus 125 ~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEP 204 (604)
.+||+||+.+..... .....+..++++++++.+||.+..++. +++||||||||++||++|+.+|++++||||
T Consensus 98 ~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~laral~~~p~llllDEP 169 (224)
T cd03220 98 ELTGRENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLP-----VKTYSSGMKARLAFAIATALEPDILLIDEV 169 (224)
T ss_pred CCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 799999998875432 123344455788899999998777644 569999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 205 TSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 205 tsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
|+|||+.++..+.+.|++++++|+|||+++|++. ++...+|+++++ ++|++++.|
T Consensus 170 ~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l-~~G~i~~~g 224 (224)
T cd03220 170 LAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVL-EKGKIRFDG 224 (224)
T ss_pred cccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-ECCEEEecC
Confidence 9999999999999999999877899999999975 577889999999 899998765
No 235
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.9e-39 Score=351.09 Aligned_cols=223 Identities=30% Similarity=0.458 Sum_probs=190.0
Q ss_pred hheeeeEEEEEecc-------ccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEe
Q 046786 32 MLKKVNMLVIIKNS-------DEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQ 104 (604)
Q Consensus 32 ~~~~~~~~~~~~~~-------~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~ 104 (604)
.++..|+...+..+ .+...+++||||.+++||++||+|+||||||||.|+|+|+.+ |++|+|.++|.+
T Consensus 280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~-----P~~G~i~~~g~~ 354 (539)
T COG1123 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP-----PSSGSIIFDGQD 354 (539)
T ss_pred eeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEEeCcc
Confidence 34566666555421 234579999999999999999999999999999999999986 579999999987
Q ss_pred CC------hhccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCC
Q 046786 105 FS------AEVKRRTGFVAQNN--VFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVR 176 (604)
Q Consensus 105 ~~------~~~~~~i~yv~Q~~--~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 176 (604)
.+ ...++.+-+|+||+ .|.|.+||++++........+. ...++++++.++++.+||... ..++++.
T Consensus 355 ~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~--~~~~~~~rv~~ll~~VgL~~~----~l~ryP~ 428 (539)
T COG1123 355 LDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGG--SGAERRARVAELLELVGLPPE----FLDRYPH 428 (539)
T ss_pred cccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhccc--chHHHHHHHHHHHHHcCCCHH----HHhcCch
Confidence 31 13456788888886 5899999999999877654322 256667789999999999852 3348899
Q ss_pred CcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCC
Q 046786 177 GLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDG 255 (604)
Q Consensus 177 ~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G 255 (604)
+||||||||++|||||+.+|++|++|||||.||+..+..++++|+++.++ |.|.|+++||.. .+.++||++++| ++|
T Consensus 429 elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm-~~G 506 (539)
T COG1123 429 ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVM-YDG 506 (539)
T ss_pred hcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEE-ECC
Confidence 99999999999999999999999999999999999999999999999875 999999999975 788999999999 999
Q ss_pred eEEEecChhhHH
Q 046786 256 SSLYFGKGEDVI 267 (604)
Q Consensus 256 ~~v~~G~~~~~~ 267 (604)
+++..|+.+++.
T Consensus 507 ~iVE~G~~~~v~ 518 (539)
T COG1123 507 RIVEEGPTEKVF 518 (539)
T ss_pred eEEEeCCHHHHh
Confidence 999999888774
No 236
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=2.3e-39 Score=323.77 Aligned_cols=209 Identities=25% Similarity=0.414 Sum_probs=170.8
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+.+.+ +++.+++|+|+++++||+++|+|||||||||||++|+|+.+ |++|+|.++|.++..
T Consensus 7 ~i~~~~l~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~~ 77 (225)
T PRK10247 7 LLQLQNVGYLA----GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS-----PTSGTLLFEGEDISTLKPE 77 (225)
T ss_pred eEEEeccEEee----CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCCeEEECCEEcCcCCHH
Confidence 35555655443 24569999999999999999999999999999999999875 579999999998742
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCcCHHHHHHH
Q 046786 108 EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLA-RCRNSIIGGRLVRGLSGGERKRI 186 (604)
Q Consensus 108 ~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv 186 (604)
..++.++|++|++.+++. |++||+.+....+. ... ..++++++++.+|+. ...+ +.++.||||||||+
T Consensus 78 ~~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~-----~~~~~LS~G~~qrv 146 (225)
T PRK10247 78 IYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRN---QQP--DPAIFLDDLERFALPDTILT-----KNIAELSGGEKQRI 146 (225)
T ss_pred HHHhccEEEecccccccc-cHHHHHHhHHhhcC---CCh--HHHHHHHHHHHcCCChHHhc-----CCcccCCHHHHHHH
Confidence 345689999999988874 99999988654321 111 234578899999996 3444 45679999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecC
Q 046786 187 SIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGK 262 (604)
Q Consensus 187 sia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~ 262 (604)
+||++|+.+|++++|||||+|||+.+...+.+.|+++++ .|.|||+++|++. .+ ..+|++++|.+++..+..|.
T Consensus 147 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 147 SLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQPHAGEMQEAR 221 (225)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEecccchHhhhh
Confidence 999999999999999999999999999999999999986 4899999999986 45 46999999954555555543
No 237
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-40 Score=312.96 Aligned_cols=209 Identities=29% Similarity=0.468 Sum_probs=188.1
Q ss_pred ccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----hccccEEEEecC
Q 046786 44 NSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----EVKRRTGFVAQN 119 (604)
Q Consensus 44 ~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~ 119 (604)
+.++.+.+|+|+|..+++|.+++|+|||||||||||.+++.+++ .++|+|.++|.++.. ++.+.++.+-|+
T Consensus 9 K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~-----~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~ 83 (252)
T COG4604 9 KSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK-----KDSGEITIDGLELTSTPSKELAKKLSILKQE 83 (252)
T ss_pred HhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc-----ccCceEEEeeeecccCChHHHHHHHHHHHhh
Confidence 44567889999999999999999999999999999999999885 579999999999853 567789999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCC--CCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCC
Q 046786 120 NVFYPHLTVAETLVFTALLRLPN--SLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPS 197 (604)
Q Consensus 120 ~~l~~~lTv~e~l~f~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~ 197 (604)
..+...+||+|-+.|+ |.|. +...++++.++++.++.++|++..| ++..+||||||||.-||+.|+.+.+
T Consensus 84 N~i~~rlTV~dLv~FG---RfPYSqGRlt~eD~~~I~~aieyl~L~~l~d-----ryLd~LSGGQrQRAfIAMVlaQdTd 155 (252)
T COG4604 84 NHINSRLTVRDLVGFG---RFPYSQGRLTKEDRRIINEAIEYLHLEDLSD-----RYLDELSGGQRQRAFIAMVLAQDTD 155 (252)
T ss_pred chhhheeEHHHHhhcC---CCcccCCCCchHHHHHHHHHHHHhcccchHH-----HhHHhcccchhhhhhhheeeeccCc
Confidence 9999999999999997 4443 3345667788999999999999887 5567999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 198 LLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 198 illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
.++||||.++||-..+..+|+.||+++++ |+||+++.||.+. ...+.|+++-| ++|+++..|+++++.
T Consensus 156 yvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAl-K~G~vv~~G~~~eii 224 (252)
T COG4604 156 YVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVAL-KNGKVVKQGSPDEII 224 (252)
T ss_pred EEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeee-cCCEEEecCCHHHhc
Confidence 99999999999999999999999999976 9999999999874 56789999999 999999999999885
No 238
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.1e-39 Score=369.93 Aligned_cols=199 Identities=28% Similarity=0.440 Sum_probs=170.3
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----hccccEEEEecCCCCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----EVKRRTGFVAQNNVFY 123 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~ 123 (604)
++.+|+|+|++++|||.+||+||||||||||+++|+|.+ | ++|+|.+||+++.+ .+|+.|+||+|++.+|
T Consensus 362 ~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p-----~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF 435 (588)
T PRK11174 362 GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P-----YQGSLKINGIELRELDPESWRKHLSWVGQNPQLP 435 (588)
T ss_pred CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C-----CCcEEEECCEecccCCHHHHHhheEEecCCCcCC
Confidence 467999999999999999999999999999999999987 3 48999999998853 5788999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccCCCcCHHHHHHHHHHHHHhhCC
Q 046786 124 PHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLG-------LARCRNSIIGGRLVRGLSGGERKRISIGQELLINP 196 (604)
Q Consensus 124 ~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p 196 (604)
+. |++||+.++. | +.++++ +++.++..+ |++-.||.+|. ....||||||||++|||||+++|
T Consensus 436 ~~-TI~eNI~~g~----~-~~~~ee----i~~al~~a~l~~~i~~lp~G~dT~vge-~G~~LSGGQrQRialARAll~~~ 504 (588)
T PRK11174 436 HG-TLRDNVLLGN----P-DASDEQ----LQQALENAWVSEFLPLLPQGLDTPIGD-QAAGLSVGQAQRLALARALLQPC 504 (588)
T ss_pred Cc-CHHHHhhcCC----C-CCCHHH----HHHHHHHhCHHHHHHhccccccccccc-CCCCCCHHHHHHHHHHHHHhcCC
Confidence 76 9999998852 1 233333 334444443 34456899984 46789999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 197 SLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 197 ~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
+||+||||||+||+.++..+.+.|+++. +++|+|+++|+++ ....+|++++| ++|+++..|+.+++.
T Consensus 505 ~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl-~~G~i~e~G~~~eL~ 571 (588)
T PRK11174 505 QLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVM-QDGQIVQQGDYAELS 571 (588)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEE-eCCeEeecCCHHHHH
Confidence 9999999999999999999999999986 4799999999985 45679999999 899999999988775
No 239
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.7e-39 Score=323.40 Aligned_cols=194 Identities=28% Similarity=0.485 Sum_probs=163.3
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----hccccEEEEecCCCCCC
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----EVKRRTGFVAQNNVFYP 124 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~ 124 (604)
+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++.. ..++.++|++|++.+++
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK-----PTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY 91 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc
Confidence 569999999999999999999999999999999999975 579999999998642 34567999999998887
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc------CccCCCcCHHHHHHHHHHHHHhhCCCe
Q 046786 125 HLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIG------GRLVRGLSGGERKRISIGQELLINPSL 198 (604)
Q Consensus 125 ~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg------~~~~~~LSgGerqRvsia~~L~~~p~i 198 (604)
.||.||+.+... ... .+.+.++++.+++.+..+.... .+.+..||||||||++||++|+.+|++
T Consensus 92 -~tv~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~l 161 (220)
T cd03245 92 -GTLRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPI 161 (220)
T ss_pred -chHHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 699999976421 111 2345678888888766554321 124579999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 199 LFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 199 llLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
|+|||||+|||+.++..+.+.|++++++ +|||+++|++. .+ +.+|+++++ ++|++++.|
T Consensus 162 lllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~-~~~d~v~~l-~~g~i~~~~ 220 (220)
T cd03245 162 LLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-LL-DLVDRIIVM-DSGRIVADG 220 (220)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-HH-HhCCEEEEE-eCCeEeecC
Confidence 9999999999999999999999999864 89999999986 34 799999999 899998754
No 240
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-39 Score=361.44 Aligned_cols=208 Identities=23% Similarity=0.379 Sum_probs=175.9
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-----hccccEEEEecCC--
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-----EVKRRTGFVAQNN-- 120 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-----~~~~~i~yv~Q~~-- 120 (604)
++.+|+|+|+++++||+++|+||||||||||||+|+|++++ |++|+|.++|+++.. ..++.++|++|++
T Consensus 274 ~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~----~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~ 349 (506)
T PRK13549 274 HIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG----RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKR 349 (506)
T ss_pred ccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC----CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhh
Confidence 35699999999999999999999999999999999999751 369999999998742 2355799999985
Q ss_pred -CCCCCCCHHHHHHHHHHhcCCC-C-CCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCcCHHHHHHHHHHHHHhhCC
Q 046786 121 -VFYPHLTVAETLVFTALLRLPN-S-LKREEKVLHAEAVINQLGLA-RCRNSIIGGRLVRGLSGGERKRISIGQELLINP 196 (604)
Q Consensus 121 -~l~~~lTv~e~l~f~~~~~~~~-~-~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p 196 (604)
.+++.+||.||+.+........ . ..+++.+++++++++.+|+. +..| +.++.|||||||||+||++|+.+|
T Consensus 350 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~LSgG~kqrv~lA~al~~~p 424 (506)
T PRK13549 350 DGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPE-----LAIARLSGGNQQKAVLAKCLLLNP 424 (506)
T ss_pred CCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcc-----cccccCCHHHHHHHHHHHHHhhCC
Confidence 4788899999998764211111 1 12334456789999999996 4556 456699999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhH
Q 046786 197 SLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266 (604)
Q Consensus 197 ~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~ 266 (604)
++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+++|++++| ++|+++..|+++++
T Consensus 425 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l-~~G~i~~~~~~~~~ 492 (506)
T PRK13549 425 KILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVM-HEGKLKGDLINHNL 492 (506)
T ss_pred CEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEE-ECCEEEEEeccccC
Confidence 999999999999999999999999999988999999999975 678899999999 89999999987654
No 241
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.3e-39 Score=320.26 Aligned_cols=199 Identities=28% Similarity=0.378 Sum_probs=170.3
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-hcc
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-EVK 110 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-~~~ 110 (604)
+++..|++..+ +++.+++|+|+++++||+++|+||||||||||+|+|+|+.+ |++|+|.++|+++.. ..+
T Consensus 11 ~l~~~~l~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~i~~~~~~ 81 (214)
T PRK13543 11 LLAAHALAFSR----NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH-----VESGQIQIDGKTATRGDRS 81 (214)
T ss_pred eEEEeeEEEec----CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC-----CCCeeEEECCEEccchhhh
Confidence 45666665443 34569999999999999999999999999999999999985 579999999998753 334
Q ss_pred ccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHH
Q 046786 111 RRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQ 190 (604)
Q Consensus 111 ~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~ 190 (604)
+.++|++|++.+++.+|++||+.+....+ ... ..+.++++++.++|.+..++ .+..||||||||++||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~---~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~lar 150 (214)
T PRK13543 82 RFMAYLGHLPGLKADLSTLENLHFLCGLH---GRR---AKQMPGSALAIVGLAGYEDT-----LVRQLSAGQKKRLALAR 150 (214)
T ss_pred hceEEeecCcccccCCcHHHHHHHHHHhc---CCc---HHHHHHHHHHHcCChhhccC-----ChhhCCHHHHHHHHHHH
Confidence 57999999999999999999998865432 111 22456788999999876664 45699999999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEE
Q 046786 191 ELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLL 251 (604)
Q Consensus 191 ~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll 251 (604)
+|+.+|++++|||||+|||+.+...+.+.|++++++|+|||+++|++. .+.+++|+++++
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l 210 (214)
T PRK13543 151 LWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTL 210 (214)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEE
Confidence 999999999999999999999999999999999888999999999975 688999999998
No 242
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-39 Score=326.41 Aligned_cols=199 Identities=31% Similarity=0.519 Sum_probs=161.7
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----hccccEEEEecCCCCCC
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----EVKRRTGFVAQNNVFYP 124 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~ 124 (604)
+.+|+|+|+++++||+++|+|||||||||||++|+|+.+ |++|+|.++|+++.. .+++.++|++|+..+++
T Consensus 14 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~ 88 (236)
T cd03253 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD-----VSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFN 88 (236)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhc
Confidence 569999999999999999999999999999999999985 579999999998742 34667999999998886
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCccCCCcCHHHHHHHHHHHHHhhCCC
Q 046786 125 HLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARC-------RNSIIGGRLVRGLSGGERKRISIGQELLINPS 197 (604)
Q Consensus 125 ~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~ 197 (604)
.|++||+.+... ....++ +.+.++..++.+. .++.+ ++.++.||||||||++||++|+.+|+
T Consensus 89 -~tv~~nl~~~~~-----~~~~~~----~~~~~~~~~l~~~~~~l~~~~~~~~-~~~~~~LS~G~~~rl~la~aL~~~p~ 157 (236)
T cd03253 89 -DTIGYNIRYGRP-----DATDEE----VIEAAKAAQIHDKIMRFPDGYDTIV-GERGLKLSGGEKQRVAIARAILKNPP 157 (236)
T ss_pred -chHHHHHhhcCC-----CCCHHH----HHHHHHHcCcHHHHHhccccccchh-hcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 699999987531 112211 2222333333221 12222 24467999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 198 LLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 198 illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
+++|||||+|||+.+...+.+.|+++++ |+|||+++|++. .+. .+|++++| ++|+++..|++++..
T Consensus 158 llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~-~~d~~~~l-~~g~i~~~~~~~~~~ 223 (236)
T cd03253 158 ILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLS-TIV-NADKIIVL-KDGRIVERGTHEELL 223 (236)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHH-hCCEEEEE-ECCEEEeeCCHHHHh
Confidence 9999999999999999999999999987 999999999986 454 49999999 899999999877654
No 243
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=4.1e-39 Score=316.51 Aligned_cols=184 Identities=27% Similarity=0.395 Sum_probs=161.2
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCC---hhccccEEEEecCCCCCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS---AEVKRRTGFVAQNNVFYP 124 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~---~~~~~~i~yv~Q~~~l~~ 124 (604)
++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |++|+|.++|.++. ...++.++|++|++.+++
T Consensus 12 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~ 86 (201)
T cd03231 12 GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP-----PLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKT 86 (201)
T ss_pred CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEecccccHHhhhheEEeccccccCC
Confidence 4569999999999999999999999999999999999985 57999999998864 245678999999999998
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 046786 125 HLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEP 204 (604)
Q Consensus 125 ~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEP 204 (604)
.+|++||+.+.... . ..++++++++.+|+.+..++ .++.||||||||++||++|+.+|++++||||
T Consensus 87 ~~tv~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~laral~~~p~llllDEP 152 (201)
T cd03231 87 TLSVLENLRFWHAD-----H----SDEQVEEALARVGLNGFEDR-----PVAQLSAGQQRRVALARLLLSGRPLWILDEP 152 (201)
T ss_pred CcCHHHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcC-----chhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 99999999875311 1 23467889999999876664 4569999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEE
Q 046786 205 TSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLL 251 (604)
Q Consensus 205 tsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll 251 (604)
|+|||+.+...+.+.|++++++|+|+|+++|++. ++...+|+++.+
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 153 TTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 9999999999999999999888999999999986 566788888775
No 244
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-39 Score=349.52 Aligned_cols=200 Identities=33% Similarity=0.515 Sum_probs=175.0
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----hccccEEEEecCCCCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----EVKRRTGFVAQNNVFY 123 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~ 123 (604)
++++++|+|+++++|+.+||+|+||||||||+++|+|+.+ |++|+|.+||.+..+ .++++++||+|++.++
T Consensus 333 g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~-----~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf 407 (559)
T COG4988 333 GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA-----PTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLF 407 (559)
T ss_pred CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC-----CCCceEEECCccccccCHHHHHhHeeeeCCCCccc
Confidence 3489999999999999999999999999999999999986 579999999998753 6899999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc------cccccccCccCCCcCHHHHHHHHHHHHHhhCCC
Q 046786 124 PHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLAR------CRNSIIGGRLVRGLSGGERKRISIGQELLINPS 197 (604)
Q Consensus 124 ~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~------~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~ 197 (604)
+. |++||+.++. + ..+++ .+.++++..||.+ -.||.+| +..++|||||+|||++||||+++++
T Consensus 408 ~g-TireNi~l~~----~-~~s~e----~i~~al~~a~l~~~v~~p~GLdt~ig-e~G~~LSgGQ~QRlaLARAll~~~~ 476 (559)
T COG4988 408 AG-TIRENILLAR----P-DASDE----EIIAALDQAGLLEFVPKPDGLDTVIG-EGGAGLSGGQAQRLALARALLSPAS 476 (559)
T ss_pred cc-cHHHHhhccC----C-cCCHH----HHHHHHHHhcHHHhhcCCCcccchhc-cCCCCCCHHHHHHHHHHHHhcCCCC
Confidence 87 9999998853 1 12333 4566677766654 4577787 5678999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 198 LLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 198 illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
++++||||++||..+.+.|++.|.+++++ +|+|++||++. ...-+|+|++| ++|+++..|..+++.
T Consensus 477 l~llDEpTA~LD~etE~~i~~~l~~l~~~-ktvl~itHrl~--~~~~~D~I~vl-d~G~l~~~g~~~~L~ 542 (559)
T COG4988 477 LLLLDEPTAHLDAETEQIILQALQELAKQ-KTVLVITHRLE--DAADADRIVVL-DNGRLVEQGTHEELS 542 (559)
T ss_pred EEEecCCccCCCHhHHHHHHHHHHHHHhC-CeEEEEEcChH--HHhcCCEEEEe-cCCceeccCCHHHHh
Confidence 99999999999999999999999999974 99999999975 35678999999 899999999998874
No 245
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=6e-39 Score=320.37 Aligned_cols=205 Identities=25% Similarity=0.394 Sum_probs=166.8
Q ss_pred heeeeEEEEEecc--cc-ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEEC--CE--eC
Q 046786 33 LKKVNMLVIIKNS--DE-EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYN--GK--QF 105 (604)
Q Consensus 33 ~~~~~~~~~~~~~--~~-~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~--G~--~~ 105 (604)
++..|+...+..+ .+ ++.+|+|+|+++++||+++|+||||||||||+++|+|.++ |++|+|.++ |. ++
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~~~g~~~~~ 76 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL-----PDSGRILVRHEGAWVDL 76 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEEecCCCccch
Confidence 3445555554321 11 2469999999999999999999999999999999999985 579999998 43 33
Q ss_pred Ch----h---c-cccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCC
Q 046786 106 SA----E---V-KRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARC-RNSIIGGRLVR 176 (604)
Q Consensus 106 ~~----~---~-~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~ 176 (604)
.. . . ++.++|++|++.+++.+||+|++.+..... ....++..+++.++++.+|+.+. .+ ..++
T Consensus 77 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~ 148 (224)
T TIGR02324 77 AQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWH-----LPPA 148 (224)
T ss_pred hhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhh-----CCcc
Confidence 21 1 1 357999999999999999999998865432 22333445678889999999753 34 4567
Q ss_pred CcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEE
Q 046786 177 GLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLL 251 (604)
Q Consensus 177 ~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll 251 (604)
+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+..++|+++.+
T Consensus 149 ~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~ 222 (224)
T TIGR02324 149 TFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDV 222 (224)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEec
Confidence 99999999999999999999999999999999999999999999999878999999999964 566789999876
No 246
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.2e-40 Score=360.93 Aligned_cols=221 Identities=28% Similarity=0.485 Sum_probs=185.3
Q ss_pred hhhhheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-
Q 046786 29 VEDMLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA- 107 (604)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~- 107 (604)
.+..++-.|+++.+. ..++.++|||+||+++|||++||+||||+||||+.++|-.++. |++|+|.+||+|+.+
T Consensus 462 ~~G~IeF~~VsFaYP-~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~-----PtsG~IllDG~~i~~~ 535 (716)
T KOG0058|consen 462 LQGVIEFEDVSFAYP-TRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD-----PTSGRILLDGVPISDI 535 (716)
T ss_pred ccceEEEEEeeeecC-CCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC-----CCCCeEEECCeehhhc
Confidence 334455666666543 2345779999999999999999999999999999999999985 789999999999854
Q ss_pred ---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCccCCCcC
Q 046786 108 ---EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVL-----HAEAVINQLGLARCRNSIIGGRLVRGLS 179 (604)
Q Consensus 108 ---~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~LS 179 (604)
.+|++||+|.|+|.||.. ||+||+.|+.. +.++++... .+.+.+. ++++..||.|| ++...||
T Consensus 536 ~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI~--~~p~gY~T~VG-EkG~qLS 606 (716)
T KOG0058|consen 536 NHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLD-----NATDEEIEAAAKMANAHEFIT--NFPDGYNTVVG-EKGSQLS 606 (716)
T ss_pred CHHHHHHHeeeeeccceeecc-cHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHH--hCccccccccC-Ccccccc
Confidence 478999999999999976 99999999753 234443322 2233333 57888999999 5566899
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEE
Q 046786 180 GGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLY 259 (604)
Q Consensus 180 gGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~ 259 (604)
||||||++|||||++||+||||||.||+||+.+...|.+.|.++.+ |+|||++.|..+ ..+.+|+|+++ ++|+++.
T Consensus 607 GGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi-~~G~V~E 682 (716)
T KOG0058|consen 607 GGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVI-DKGRVVE 682 (716)
T ss_pred chHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhh--HhhhccEEEEE-cCCeEEe
Confidence 9999999999999999999999999999999999999999999876 599999999975 46789999999 8999999
Q ss_pred ecChhhHHH
Q 046786 260 FGKGEDVIN 268 (604)
Q Consensus 260 ~G~~~~~~~ 268 (604)
.|+-+++++
T Consensus 683 ~G~h~eLl~ 691 (716)
T KOG0058|consen 683 MGTHDELLS 691 (716)
T ss_pred cccHHHHhh
Confidence 998777653
No 247
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.8e-39 Score=367.81 Aligned_cols=214 Identities=26% Similarity=0.430 Sum_probs=178.3
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~ 108 (604)
++..|+++.+. .+++.+|+|+|+++++||.+||+||||||||||+|+|+|+++ |++|+|.+||++++. .
T Consensus 342 i~~~~vsf~y~--~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~-----p~~G~I~i~g~~i~~~~~~~ 414 (582)
T PRK11176 342 IEFRNVTFTYP--GKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD-----IDEGEILLDGHDLRDYTLAS 414 (582)
T ss_pred EEEEEEEEecC--CCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC-----CCCceEEECCEEhhhcCHHH
Confidence 45555555442 123679999999999999999999999999999999999986 679999999999853 5
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccCCCcCHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLG-------LARCRNSIIGGRLVRGLSGG 181 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgG 181 (604)
+++.++||||++.+|+. |++||+.++. +...+++ ++++.++..| |.+-.||.+|+ ..+.||||
T Consensus 415 ~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~~~~~~~----~i~~al~~~~l~~~i~~lp~Gldt~ig~-~g~~LSGG 484 (582)
T PRK11176 415 LRNQVALVSQNVHLFND-TIANNIAYAR----TEQYSRE----QIEEAARMAYAMDFINKMDNGLDTVIGE-NGVLLSGG 484 (582)
T ss_pred HHhhceEEccCceeecc-hHHHHHhcCC----CCCCCHH----HHHHHHHHhCcHHHHHhcccccCceeCC-CCCcCCHH
Confidence 67889999999999975 9999997742 2222332 3445555555 34456888985 45789999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 182 ERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 182 erqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
||||++|||+|+++|++++||||||+||+.++..+++.|+++.+ ++|+|+++|+++ ....+|++++| ++|+++..|
T Consensus 485 qrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~-~~tvI~VtHr~~--~~~~~D~Ii~l-~~g~i~e~g 560 (582)
T PRK11176 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEKADEILVV-EDGEIVERG 560 (582)
T ss_pred HHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEE-ECCEEEEeC
Confidence 99999999999999999999999999999999999999999864 799999999984 56789999999 899999999
Q ss_pred ChhhHH
Q 046786 262 KGEDVI 267 (604)
Q Consensus 262 ~~~~~~ 267 (604)
+.+++.
T Consensus 561 ~~~~l~ 566 (582)
T PRK11176 561 THAELL 566 (582)
T ss_pred CHHHHH
Confidence 988775
No 248
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-38 Score=325.91 Aligned_cols=223 Identities=25% Similarity=0.362 Sum_probs=178.3
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCC------
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS------ 106 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~------ 106 (604)
++..|+.+.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++....+++|+|.++|+++.
T Consensus 17 l~~~~l~~~~~----~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~ 92 (265)
T PRK14252 17 SEVNKLNFYYG----GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEV 92 (265)
T ss_pred EEEEEEEEEEC----CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccccc
Confidence 44556555442 35699999999999999999999999999999999998753110136999999997653
Q ss_pred --hhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHH
Q 046786 107 --AEVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLK-REEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGER 183 (604)
Q Consensus 107 --~~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~-~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 183 (604)
...++.++|++|++.+++. |++||+.+..... ... +....+++++.++.+++.+...... ++.+..||||||
T Consensus 93 ~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~ 167 (265)
T PRK14252 93 DPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR---GVKRRSILEERVENALRNAALWDEVKDRL-GDLAFNLSGGQQ 167 (265)
T ss_pred CHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc---CCChHHHHHHHHHHHHHHcCCchhhhHHH-hCCcccCCHHHH
Confidence 1346679999999998886 9999998865432 112 2223456788888888753111111 245679999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecCh
Q 046786 184 KRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKG 263 (604)
Q Consensus 184 qRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~ 263 (604)
||++||++|+.+|++++|||||+|||+.+...+.+.|+++++ ++|||+++|++. ++.+++|++++| ++|+++..|+.
T Consensus 168 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~~l-~~G~i~~~g~~ 244 (265)
T PRK14252 168 QRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTAYM-YMGELIEFGAT 244 (265)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEEEE-ECCEEEEeCCH
Confidence 999999999999999999999999999999999999999976 689999999975 677899999999 89999999998
Q ss_pred hhHH
Q 046786 264 EDVI 267 (604)
Q Consensus 264 ~~~~ 267 (604)
+++.
T Consensus 245 ~~~~ 248 (265)
T PRK14252 245 DTIF 248 (265)
T ss_pred HHHH
Confidence 7653
No 249
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=2.2e-39 Score=373.49 Aligned_cols=210 Identities=30% Similarity=0.459 Sum_probs=177.5
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~ 108 (604)
++..|+++.+.. .++.+|+|+|+++++||.+||+||||||||||+|+|+|+++ |++|+|.+||+++.. .
T Consensus 452 I~~~nvsf~Y~~--~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~-----p~~G~I~idg~~i~~~~~~~ 524 (686)
T TIGR03797 452 IEVDRVTFRYRP--DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET-----PESGSVFYDGQDLAGLDVQA 524 (686)
T ss_pred EEEEEEEEEcCC--CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEEcCcCCHHH
Confidence 455566555432 24679999999999999999999999999999999999986 679999999999853 5
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCCCcCHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLA-------RCRNSIIGGRLVRGLSGG 181 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgG 181 (604)
+|+.+|||+|++.+|+. |++||+.++. | .+++ ++.+.++..|+. +-.||.+|+ ....||||
T Consensus 525 lr~~i~~v~Q~~~lf~g-TI~eNi~~~~----~--~~~e----~i~~al~~a~l~~~i~~lp~G~dt~ige-~G~~LSGG 592 (686)
T TIGR03797 525 VRRQLGVVLQNGRLMSG-SIFENIAGGA----P--LTLD----EAWEAARMAGLAEDIRAMPMGMHTVISE-GGGTLSGG 592 (686)
T ss_pred HHhccEEEccCCccCcc-cHHHHHhcCC----C--CCHH----HHHHHHHHcCcHHHHHhccccccccccC-CCCCCCHH
Confidence 78899999999999976 9999998752 1 2222 355566666654 345888884 46789999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 182 ERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 182 erqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
||||++|||||+++|++|+||||||+||+.+...+.+.|+++ ++|+|+++|+++ ....+|++++| ++|+++..|
T Consensus 593 QrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl-~~G~iv~~G 666 (686)
T TIGR03797 593 QRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVL-DAGRVVQQG 666 (686)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEE-ECCEEEEEC
Confidence 999999999999999999999999999999999999999887 589999999985 45679999999 899999999
Q ss_pred ChhhHH
Q 046786 262 KGEDVI 267 (604)
Q Consensus 262 ~~~~~~ 267 (604)
+.+++.
T Consensus 667 ~~~~Ll 672 (686)
T TIGR03797 667 TYDELM 672 (686)
T ss_pred CHHHHH
Confidence 988875
No 250
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-38 Score=322.73 Aligned_cols=198 Identities=27% Similarity=0.392 Sum_probs=172.1
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCC
Q 046786 47 EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHL 126 (604)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~l 126 (604)
..+.+|+|+|+++++||+++|+||||||||||+++|+|+++ |++|+|.++|. +++++|+..+.+.+
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~-----p~~G~I~~~g~---------~~~~~~~~~~~~~~ 100 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS-----PTVGKVDRNGE---------VSVIAISAGLSGQL 100 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCE---------EeEEecccCCCCCC
Confidence 34679999999999999999999999999999999999985 57999999985 46778887778889
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 046786 127 TVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTS 206 (604)
Q Consensus 127 Tv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPts 206 (604)
|+.||+.+..... ..+.++..+.++++++.+++.+..+ ..++.||||||||++||++|+.+|++|+|||||+
T Consensus 101 tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~ 172 (264)
T PRK13546 101 TGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIY-----QPVKKYSSGMRAKLGFSINITVNPDILVIDEALS 172 (264)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhc-----CCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccc
Confidence 9999998765432 2234444556788899999987666 4466999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHHH
Q 046786 207 GLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVIN 268 (604)
Q Consensus 207 gLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~~ 268 (604)
|||+.+...+++.|+++++.|+|||+++|++. .+.+.+|++++| ++|+++..|+++++.+
T Consensus 173 gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l-~~G~i~~~g~~~~~~~ 232 (264)
T PRK13546 173 VGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWI-EGGKLKDYGELDDVLP 232 (264)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEE-ECCEEEEeCCHHHHHH
Confidence 99999999999999999878999999999975 677889999999 8999999999887754
No 251
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.2e-39 Score=368.10 Aligned_cols=215 Identities=32% Similarity=0.492 Sum_probs=179.8
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~ 108 (604)
++..|+++.+. +++++|+|+|+++++||.+||+||||||||||+|.|.++++ |++|+|.+||+++.. .
T Consensus 329 I~f~~vsf~y~---~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~-----~~~G~I~idg~dI~~i~~~~ 400 (567)
T COG1132 329 IEFENVSFSYP---GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD-----PTSGEILIDGIDIRDISLDS 400 (567)
T ss_pred EEEEEEEEEcC---CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCCeEEECCEehhhcCHHH
Confidence 44455554432 25789999999999999999999999999999999999986 579999999999863 5
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHH-----HHHHHHHcCCCccccccccCccCCCcCHHHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLH-----AEAVINQLGLARCRNSIIGGRLVRGLSGGER 183 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 183 (604)
+|+.|+||+|++.+|. -||+||+.++.. ..++++-.+. +.+.++. +.+..||.|| +....||||||
T Consensus 401 lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~-----~at~eei~~a~k~a~~~d~I~~--lp~g~dt~vg-e~G~~LSgGQr 471 (567)
T COG1132 401 LRKRIGIVSQDPLLFS-GTIRENIALGRP-----DATDEEIEEALKLANAHEFIAN--LPDGYDTIVG-ERGVNLSGGQR 471 (567)
T ss_pred HHHhccEEcccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHHh--Ccccccceec-CCCccCCHHHH
Confidence 7899999999999998 599999998631 1344333222 2333433 3556899999 66778999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecCh
Q 046786 184 KRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKG 263 (604)
Q Consensus 184 qRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~ 263 (604)
||++||||++.+|++|+||||||+||+.+...+.+.++++. +|+|+|+++|.++ .+. .+|++++| ++|+++..|+.
T Consensus 472 QrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls-ti~-~aD~IiVl-~~G~i~e~G~h 547 (567)
T COG1132 472 QRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS-TIK-NADRIIVL-DNGRIVERGTH 547 (567)
T ss_pred HHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh-HHH-hCCEEEEE-ECCEEEEecCH
Confidence 99999999999999999999999999999999999999887 5789999999985 444 49999999 89999999999
Q ss_pred hhHHH
Q 046786 264 EDVIN 268 (604)
Q Consensus 264 ~~~~~ 268 (604)
+++..
T Consensus 548 ~eLl~ 552 (567)
T COG1132 548 EELLA 552 (567)
T ss_pred HHHHH
Confidence 98865
No 252
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.1e-39 Score=306.69 Aligned_cols=158 Identities=39% Similarity=0.648 Sum_probs=145.3
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh---hccccEEEEecCCCCCCC
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---EVKRRTGFVAQNNVFYPH 125 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---~~~~~i~yv~Q~~~l~~~ 125 (604)
+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++.. ..++.++|++|++.+++.
T Consensus 13 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 87 (173)
T cd03230 13 KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK-----PDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYEN 87 (173)
T ss_pred eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEcccchHhhhccEEEEecCCccccC
Confidence 469999999999999999999999999999999999985 569999999998743 456789999999999998
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 046786 126 LTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPT 205 (604)
Q Consensus 126 lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPt 205 (604)
+|+.||+. ||||||||++||++|+.+|++++|||||
T Consensus 88 ~tv~~~~~--------------------------------------------LS~G~~qrv~laral~~~p~illlDEPt 123 (173)
T cd03230 88 LTVRENLK--------------------------------------------LSGGMKQRLALAQALLHDPELLILDEPT 123 (173)
T ss_pred CcHHHHhh--------------------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 99999973 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeE
Q 046786 206 SGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSS 257 (604)
Q Consensus 206 sgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~ 257 (604)
+|||+.++..+.+.|++++++|.|+|+++|++. .+...+|+++++ ++|++
T Consensus 124 ~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l-~~g~i 173 (173)
T cd03230 124 SGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAIL-NNGRI 173 (173)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEE-eCCCC
Confidence 999999999999999999877999999999975 677789999999 78863
No 253
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-39 Score=345.77 Aligned_cols=212 Identities=29% Similarity=0.498 Sum_probs=178.7
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~ 108 (604)
++..|+.+.+. ++++||+++||+|++||-+||+|+|||||||+||+|.+... ++|+|++||+++.+ .
T Consensus 352 I~F~dV~f~y~---~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d------~sG~I~IdG~dik~~~~~S 422 (591)
T KOG0057|consen 352 IEFDDVHFSYG---PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD------YSGSILIDGQDIKEVSLES 422 (591)
T ss_pred EEEEeeEEEeC---CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc------cCCcEEECCeeHhhhChHH
Confidence 45555555432 34559999999999999999999999999999999999874 49999999999853 5
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccCCCcCHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLG-------LARCRNSIIGGRLVRGLSGG 181 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgG 181 (604)
+|+.|||||||..||.+ ||.+|+.|+.. ..+.++ |-+..+..| +++-.+|.|| ++...||||
T Consensus 423 lR~~Ig~VPQd~~LFnd-TIl~NI~YGn~-----sas~ee----V~e~~k~a~~hd~i~~l~~GY~T~VG-erG~~LSGG 491 (591)
T KOG0057|consen 423 LRQSIGVVPQDSVLFND-TILYNIKYGNP-----SASDEE----VVEACKRAGLHDVISRLPDGYQTLVG-ERGLMLSGG 491 (591)
T ss_pred hhhheeEeCCcccccch-hHHHHhhcCCC-----CcCHHH----HHHHHHHcCcHHHHHhccccchhhHh-hcccccccc
Confidence 78999999999999976 99999998731 233433 333444443 4566788899 557789999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 182 ERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 182 erqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
|||||+|||++++||+|+++|||||.||+.+..++++.+++. ..|+|+|++.|+.+ +..-||+|+++ ++|++...|
T Consensus 492 ekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l~--ll~~~DkI~~l-~nG~v~e~g 567 (591)
T KOG0057|consen 492 EKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRLD--LLKDFDKIIVL-DNGTVKEYG 567 (591)
T ss_pred hHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecch--hHhcCCEEEEE-ECCeeEEec
Confidence 999999999999999999999999999999999999999993 46899999999964 67789999999 899999999
Q ss_pred ChhhHHH
Q 046786 262 KGEDVIN 268 (604)
Q Consensus 262 ~~~~~~~ 268 (604)
+-++++.
T Consensus 568 th~ell~ 574 (591)
T KOG0057|consen 568 THSELLA 574 (591)
T ss_pred cHHHHhh
Confidence 9998876
No 254
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=7.9e-39 Score=363.16 Aligned_cols=211 Identities=22% Similarity=0.392 Sum_probs=179.0
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~ 108 (604)
++..|+++.+. +++.+|+|+|+++++||.+||+|+||||||||+|+|+|+++ |++|+|.+||.++++ .
T Consensus 341 i~~~~v~f~y~---~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~-----p~~G~I~idg~~i~~~~~~~ 412 (592)
T PRK10790 341 IDIDNVSFAYR---DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP-----LTEGEIRLDGRPLSSLSHSV 412 (592)
T ss_pred EEEEEEEEEeC---CCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCceEEECCEEhhhCCHHH
Confidence 44455555442 23569999999999999999999999999999999999986 679999999999853 5
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCCCcCHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLA-------RCRNSIIGGRLVRGLSGG 181 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgG 181 (604)
+++.|+||||++.+|+. |++||+.++. ..++ ++++++++.+|+. +-.||.+|. ....||||
T Consensus 413 l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~d----~~i~~a~~~~gl~~~i~~lp~Gldt~i~e-~g~~LSGG 480 (592)
T PRK10790 413 LRQGVAMVQQDPVVLAD-TFLANVTLGR------DISE----EQVWQALETVQLAELARSLPDGLYTPLGE-QGNNLSVG 480 (592)
T ss_pred HHhheEEEccCCccccc-hHHHHHHhCC------CCCH----HHHHHHHHHcCcHHHHHhccccccccccC-CCCCCCHH
Confidence 78899999999999987 9999998852 1222 2456677777754 345788874 56689999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 182 ERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 182 erqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
||||++|||||+.+|++++||||||+||+.++..+.+.|+++++ ++|+|+++|+++ ....+|++++| ++|+++..|
T Consensus 481 qrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l-~~G~i~~~G 556 (592)
T PRK10790 481 QKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVL-HRGQAVEQG 556 (592)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEE-ECCEEEEEc
Confidence 99999999999999999999999999999999999999999875 699999999984 45679999999 899999999
Q ss_pred ChhhHH
Q 046786 262 KGEDVI 267 (604)
Q Consensus 262 ~~~~~~ 267 (604)
+.+++.
T Consensus 557 ~~~~L~ 562 (592)
T PRK10790 557 THQQLL 562 (592)
T ss_pred CHHHHH
Confidence 988875
No 255
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=1.2e-38 Score=313.00 Aligned_cols=182 Identities=34% Similarity=0.493 Sum_probs=155.3
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h-ccccEEEEecCCCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E-VKRRTGFVAQNNVF 122 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~-~~~~i~yv~Q~~~l 122 (604)
++.+|+|+|+++++||+++|+||||||||||+|+|+|..+ ..|++|+|.++|+++.. . .++.++|++|++.+
T Consensus 12 ~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~ 88 (200)
T cd03217 12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPK---YEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPE 88 (200)
T ss_pred CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCc---CCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhh
Confidence 3569999999999999999999999999999999999842 02679999999998743 1 23459999999988
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEe
Q 046786 123 YPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLD 202 (604)
Q Consensus 123 ~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLD 202 (604)
++..|+++++ + ...+.||||||||++||++|+.+|++++||
T Consensus 89 ~~~~~~~~~l----------------------------------~-----~~~~~LS~G~~qrv~laral~~~p~illlD 129 (200)
T cd03217 89 IPGVKNADFL----------------------------------R-----YVNEGFSGGEKKRNEILQLLLLEPDLAILD 129 (200)
T ss_pred ccCccHHHHH----------------------------------h-----hccccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 8888888766 0 112479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh-hcCeEEEEecCCeEEEecChhhHHHHHHhCC
Q 046786 203 EPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFY-MFNKILLLSSDGSSLYFGKGEDVINYFAGIG 274 (604)
Q Consensus 203 EPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~-~~d~v~ll~~~G~~v~~G~~~~~~~~f~~~g 274 (604)
|||+|||+.++..+.+.|++++++|+|||+++|++. .+.. .+|++++| ++|+++..|+. ++.+.|.+.|
T Consensus 130 EPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l-~~G~i~~~~~~-~~~~~~~~~~ 199 (200)
T cd03217 130 EPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVL-YDGRIVKSGDK-ELALEIEKKG 199 (200)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEE-ECCEEEEEccH-HHHhhhcccc
Confidence 999999999999999999999877899999999986 4555 79999999 89999999954 4655554433
No 256
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1.6e-39 Score=324.86 Aligned_cols=210 Identities=27% Similarity=0.465 Sum_probs=168.3
Q ss_pred hhhhheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-
Q 046786 29 VEDMLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA- 107 (604)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~- 107 (604)
...+++..|+.+.+..+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 8 ~~~~l~~~~l~~~~~~~-~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~ 81 (226)
T cd03248 8 LKGIVKFQNVTFAYPTR-PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ-----PQGGQVLLDGKPISQY 81 (226)
T ss_pred cCceEEEEEEEEEeCCC-CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCcEEEECCCchHHc
Confidence 34456667776665322 12469999999999999999999999999999999999985 579999999987642
Q ss_pred ---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHHHc--CCCccccccccCccCCCcC
Q 046786 108 ---EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKR---EEKVLHAEAVINQL--GLARCRNSIIGGRLVRGLS 179 (604)
Q Consensus 108 ---~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~---~~~~~~v~~~l~~l--gL~~~~~~~vg~~~~~~LS 179 (604)
..++.++|++|++.+++ .||+||+.+..... .... ......+++.++.+ |+.+..+ +.++.||
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~---~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~-----~~~~~LS 152 (226)
T cd03248 82 EHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSC---SFECVKEAAQKAHAHSFISELASGYDTEVG-----EKGSQLS 152 (226)
T ss_pred CHHHHHhhEEEEecccHHHh-hhHHHHhccccCCC---CHHHHHHHHHHcCcHHHHHhccccccchhh-----cCCCcCC
Confidence 34567999999998876 59999998753211 1111 11112356788888 7765554 4467999
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeE
Q 046786 180 GGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSS 257 (604)
Q Consensus 180 gGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~ 257 (604)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+. .+|++++| ++|++
T Consensus 153 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~-~~d~i~~l-~~g~i 226 (226)
T cd03248 153 GGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLS-TVE-RADQILVL-DGGRI 226 (226)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHH-HHH-hCCEEEEe-cCCcC
Confidence 9999999999999999999999999999999999999999999876 689999999986 454 59999999 78864
No 257
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=1.1e-38 Score=312.52 Aligned_cols=182 Identities=29% Similarity=0.441 Sum_probs=156.6
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh---hccccEEEEecCCCCCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---EVKRRTGFVAQNNVFYP 124 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---~~~~~i~yv~Q~~~l~~ 124 (604)
++.+|+|+|+++++||+++|+||||||||||+++|+|.++ |++|+|.++|+++.. ..++.++|++|++.+++
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~ 86 (198)
T TIGR01189 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR-----PDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKP 86 (198)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCEEcccchHHhhhheEEeccCccccc
Confidence 4579999999999999999999999999999999999885 579999999998642 34568999999998888
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 046786 125 HLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEP 204 (604)
Q Consensus 125 ~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEP 204 (604)
.+|+.||+.+....+. . + .+++.++++.+|+.+..++ .+..||||||||++||++|+.+|++++||||
T Consensus 87 ~~tv~~~l~~~~~~~~----~-~--~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~llllDEP 154 (198)
T TIGR01189 87 ELSALENLHFWAAIHG----G-A--QRTIEDALAAVGLTGFEDL-----PAAQLSAGQQRRLALARLWLSRAPLWILDEP 154 (198)
T ss_pred CCcHHHHHHHHHHHcC----C-c--HHHHHHHHHHcCCHHHhcC-----ChhhcCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 8999999988654321 1 1 2357889999999877664 4569999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEE
Q 046786 205 TSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKIL 249 (604)
Q Consensus 205 tsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ 249 (604)
|+|||+.+...+.+.|++++++|.|||+++|++.. ..+++++
T Consensus 155 t~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~---~~~~~~~ 196 (198)
T TIGR01189 155 TTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG---LVEAREL 196 (198)
T ss_pred CcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc---ccceEEe
Confidence 99999999999999999998889999999999853 2345554
No 258
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=3.1e-39 Score=373.75 Aligned_cols=212 Identities=25% Similarity=0.370 Sum_probs=177.1
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~ 108 (604)
++..|+++.+.. .++.+|+|+|++|++||.+||+||||||||||+|+|+|+++ |++|+|.+||.++.. .
T Consensus 478 I~~~~vsf~y~~--~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~-----p~~G~I~idg~~i~~~~~~~ 550 (710)
T TIGR03796 478 VELRNITFGYSP--LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ-----PWSGEILFDGIPREEIPREV 550 (710)
T ss_pred EEEEEEEEecCC--CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEeHHHCCHHH
Confidence 455566665432 23579999999999999999999999999999999999986 679999999999853 5
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCCCcCHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLA-------RCRNSIIGGRLVRGLSGG 181 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgG 181 (604)
+|+.+|||+|++.+|+. |++||+.++. | ..+++ ++.+.++..|+. +-.||.+|+ ....||||
T Consensus 551 lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~----~-~~~~~----~i~~al~~~~l~~~i~~lp~gl~t~i~e-~G~~LSGG 619 (710)
T TIGR03796 551 LANSVAMVDQDIFLFEG-TVRDNLTLWD----P-TIPDA----DLVRACKDAAIHDVITSRPGGYDAELAE-GGANLSGG 619 (710)
T ss_pred HHhheeEEecCChhhhc-cHHHHhhCCC----C-CCCHH----HHHHHHHHhCCHHHHHhCcCcccceecc-CCCCCCHH
Confidence 78999999999999975 9999997641 1 22332 344555555543 356788884 46789999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 182 ERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 182 erqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
||||++|||+|+++|++|+||||||+||+.++..+.+.|++ .++|+|+++|+++ ....+|++++| ++|+++..|
T Consensus 620 QrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl-~~G~i~~~G 693 (710)
T TIGR03796 620 QRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVL-ERGKVVQRG 693 (710)
T ss_pred HHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEE-eCCEEEEec
Confidence 99999999999999999999999999999999999999986 4899999999985 35679999999 899999999
Q ss_pred ChhhHHH
Q 046786 262 KGEDVIN 268 (604)
Q Consensus 262 ~~~~~~~ 268 (604)
+.+++.+
T Consensus 694 ~~~~Ll~ 700 (710)
T TIGR03796 694 THEELWA 700 (710)
T ss_pred CHHHHHH
Confidence 9998864
No 259
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.6e-40 Score=321.79 Aligned_cols=195 Identities=30% Similarity=0.508 Sum_probs=174.7
Q ss_pred eceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--------hccccEEEEecCCCCCC
Q 046786 53 KGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--------EVKRRTGFVAQNNVFYP 124 (604)
Q Consensus 53 ~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--------~~~~~i~yv~Q~~~l~~ 124 (604)
=++++..+.-.++||-|+||||||||+|+|+|+.+ |++|.|.+||+-+.+ ..+|+|||||||-.|||
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r-----PdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFp 89 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTR-----PDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFP 89 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCC-----ccccEEEECCEEeecccCCcccChhhheeeeEeecccccc
Confidence 46778877767999999999999999999999986 689999999987632 24688999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 046786 125 HLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEP 204 (604)
Q Consensus 125 ~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEP 204 (604)
++||+.||.|+.... .....+++.+.||++|..+ +++..|||||||||+|+|||+++|++|++|||
T Consensus 90 H~tVrgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~-----R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEP 155 (352)
T COG4148 90 HYTVRGNLRYGMWKS---------MRAQFDQLVALLGIEHLLD-----RYPGTLSGGEKQRVAIGRALLTAPELLLMDEP 155 (352)
T ss_pred ceEEecchhhhhccc---------chHhHHHHHHHhCcHHHHh-----hCCCccCcchhhHHHHHHHHhcCCCeeeecCc
Confidence 999999999986321 2345788999999999887 67889999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHHH
Q 046786 205 TSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVIN 268 (604)
Q Consensus 205 tsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~~ 268 (604)
.+.||-....+++-+|++|+++ +..|+.++|.+. ++.+++|++++| ++|++..+|+.+++.+
T Consensus 156 LaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~-Ev~RLAd~vV~l-e~GkV~A~g~~e~v~~ 218 (352)
T COG4148 156 LASLDLPRKREILPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVL-ENGKVKASGPLEEVWG 218 (352)
T ss_pred hhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHH-HHHhhhheEEEe-cCCeEEecCcHHHHhc
Confidence 9999999999999999999976 889999999975 799999999999 8999999999988753
No 260
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-39 Score=357.24 Aligned_cols=202 Identities=26% Similarity=0.456 Sum_probs=171.9
Q ss_pred ceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-----hccccEEEEecC---CC
Q 046786 50 MILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-----EVKRRTGFVAQN---NV 121 (604)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-----~~~~~i~yv~Q~---~~ 121 (604)
.+|+|+|+++++||+++|+||||||||||||+|+|+.+ |++|+|.++|+++.. ..++.+|||+|+ ..
T Consensus 277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 351 (510)
T PRK09700 277 KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK-----RAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNG 351 (510)
T ss_pred CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc-----CCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCC
Confidence 48999999999999999999999999999999999985 579999999988742 235679999998 46
Q ss_pred CCCCCCHHHHHHHHHHhc---CCC--C-CCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCcCHHHHHHHHHHHHHhh
Q 046786 122 FYPHLTVAETLVFTALLR---LPN--S-LKREEKVLHAEAVINQLGLA-RCRNSIIGGRLVRGLSGGERKRISIGQELLI 194 (604)
Q Consensus 122 l~~~lTv~e~l~f~~~~~---~~~--~-~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRvsia~~L~~ 194 (604)
+++.+||.||+.+....+ ... . ......+++++++++.+||. +..+ +.+++|||||||||+||++|+.
T Consensus 352 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~LSgGq~qrv~lAral~~ 426 (510)
T PRK09700 352 FFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVN-----QNITELSGGNQQKVLISKWLCC 426 (510)
T ss_pred CcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCcc-----CccccCChHHHHHHHHHHHHhc
Confidence 888999999998753211 000 1 12233345678999999996 6666 4456999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecCh
Q 046786 195 NPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKG 263 (604)
Q Consensus 195 ~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~ 263 (604)
+|++|||||||+|||+.++..+.+.|++++++|+|||++|||+. .+...+|++++| ++|+++..++.
T Consensus 427 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l-~~G~i~~~~~~ 493 (510)
T PRK09700 427 CPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVF-CEGRLTQILTN 493 (510)
T ss_pred CCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEE-ECCEEEEEecC
Confidence 99999999999999999999999999999888999999999975 678899999999 89999988865
No 261
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=9.7e-39 Score=308.97 Aligned_cols=160 Identities=30% Similarity=0.523 Sum_probs=145.4
Q ss_pred eeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-----hccccEEEEecCC---CC
Q 046786 51 ILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-----EVKRRTGFVAQNN---VF 122 (604)
Q Consensus 51 iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-----~~~~~i~yv~Q~~---~l 122 (604)
+|+|+|+++++||+++|+||||||||||||+|+|.++ |++|+|.++|+++.. ..++.++|++|+. .+
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP-----PASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGL 89 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcc
Confidence 8999999999999999999999999999999999985 579999999998742 2456899999984 57
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEe
Q 046786 123 YPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLD 202 (604)
Q Consensus 123 ~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLD 202 (604)
++.+|++||+.+... ||||||||++||++|+.+|++++||
T Consensus 90 ~~~~t~~e~l~~~~~----------------------------------------LS~G~~qrl~la~al~~~p~llllD 129 (182)
T cd03215 90 VLDLSVAENIALSSL----------------------------------------LSGGNQQKVVLARWLARDPRVLILD 129 (182)
T ss_pred cCCCcHHHHHHHHhh----------------------------------------cCHHHHHHHHHHHHHccCCCEEEEC
Confidence 888999999976421 9999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeE
Q 046786 203 EPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSS 257 (604)
Q Consensus 203 EPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~ 257 (604)
|||+|||+.++..+.+.|++++++|+|+|+++|++. .+..++|++++| ++|++
T Consensus 130 EP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l-~~G~i 182 (182)
T cd03215 130 EPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVM-YEGRI 182 (182)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEe-cCCcC
Confidence 999999999999999999999877999999999975 688899999999 78864
No 262
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=1.5e-38 Score=323.08 Aligned_cols=202 Identities=29% Similarity=0.422 Sum_probs=169.1
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccc
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKR 111 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~ 111 (604)
+++..|+.+.+. ++.+|+|+|+++++||+++|+||||||||||||+|+|+++ |++|+|.++| +.
T Consensus 4 ~l~~~~l~~~~~----~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~-----p~~G~i~~~~-------~~ 67 (251)
T PRK09544 4 LVSLENVSVSFG----QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA-----PDEGVIKRNG-------KL 67 (251)
T ss_pred EEEEeceEEEEC----CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECC-------cc
Confidence 355556555442 3569999999999999999999999999999999999985 5799999987 24
Q ss_pred cEEEEecCCCCCCCC--CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHH
Q 046786 112 RTGFVAQNNVFYPHL--TVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIG 189 (604)
Q Consensus 112 ~i~yv~Q~~~l~~~l--Tv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia 189 (604)
.++|++|++.+++.+ |+.+++.+. .... .+++.++++.+||.+..++ .++.||||||||++||
T Consensus 68 ~i~~v~q~~~~~~~l~~~~~~~~~~~------~~~~----~~~~~~~l~~~gl~~~~~~-----~~~~LSgGq~qrv~la 132 (251)
T PRK09544 68 RIGYVPQKLYLDTTLPLTVNRFLRLR------PGTK----KEDILPALKRVQAGHLIDA-----PMQKLSGGETQRVLLA 132 (251)
T ss_pred CEEEeccccccccccChhHHHHHhcc------cccc----HHHHHHHHHHcCChHHHhC-----ChhhCCHHHHHHHHHH
Confidence 699999998877764 777776431 1111 2357789999999877664 4669999999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 190 QELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 190 ~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.+.+|++++| ++ +++..|+++++.
T Consensus 133 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l-~~-~i~~~g~~~~~~ 208 (251)
T PRK09544 133 RALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCL-NH-HICCSGTPEVVS 208 (251)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEE-CC-ceEeeCCHHHHh
Confidence 9999999999999999999999999999999999875 899999999975 677889999999 64 789999887653
No 263
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=1.1e-38 Score=318.64 Aligned_cols=197 Identities=30% Similarity=0.449 Sum_probs=164.5
Q ss_pred EEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCC--CCCCHHHHHHH
Q 046786 57 GAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFY--PHLTVAETLVF 134 (604)
Q Consensus 57 ~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~--~~lTv~e~l~f 134 (604)
+++++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++.. .++.++|++|++.++ ..+|+.||+.+
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~-~~~~i~~v~q~~~~~~~~~~tv~~~l~~ 74 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP-----PAKGTVKVAGASPGK-GWRHIGYVPQRHEFAWDFPISVAHTVMS 74 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCccchH-hhCcEEEecccccccCCCCccHHHHHHh
Confidence 4689999999999999999999999999885 579999999987643 456799999998764 34799999987
Q ss_pred HHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHH
Q 046786 135 TALLRLP-NSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMA 213 (604)
Q Consensus 135 ~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~ 213 (604)
+...... .........+++.++++.+|+.+..++ .+++||||||||++||++|+.+|+++++||||+|||+.++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~ 149 (223)
T TIGR03771 75 GRTGHIGWLRRPCVADFAAVRDALRRVGLTELADR-----PVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQ 149 (223)
T ss_pred ccccccccccCCcHHHHHHHHHHHHHhCCchhhcC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 5321100 001122334568899999999876664 4568999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 214 KKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 214 ~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
..+.+.|++++++|+|||+++|++. .+.+.+|+++++ +|++++.|+++++.
T Consensus 150 ~~l~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l--~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 150 ELLTELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL--NGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE--CCEEEeecCHHHhc
Confidence 9999999999878999999999976 678899999988 49999999987663
No 264
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=7.3e-39 Score=361.75 Aligned_cols=213 Identities=32% Similarity=0.543 Sum_probs=179.9
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~ 108 (604)
++..|+++.+.. +++.+|+|+|+++++||.+||+||||||||||+|+|+|.++ |++|+|.+||+++.+ .
T Consensus 339 i~~~~v~f~y~~--~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~-----p~~G~I~i~g~~i~~~~~~~ 411 (574)
T PRK11160 339 LTLNNVSFTYPD--QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD-----PQQGEILLNGQPIADYSEAA 411 (574)
T ss_pred EEEEEEEEECCC--CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEEhhhCCHHH
Confidence 455555554422 23469999999999999999999999999999999999985 679999999999753 5
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc------cccccccCccCCCcCHHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLAR------CRNSIIGGRLVRGLSGGE 182 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~------~~~~~vg~~~~~~LSgGe 182 (604)
+++.++||+|++.+|+. |++||+.++. | ..++ +.+.+.++..++.+ -.||.+| +....|||||
T Consensus 412 ~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~----~-~~~~----~~i~~al~~~~l~~~i~~p~GldT~vg-e~g~~LSgGq 480 (574)
T PRK11160 412 LRQAISVVSQRVHLFSA-TLRDNLLLAA----P-NASD----EALIEVLQQVGLEKLLEDDKGLNAWLG-EGGRQLSGGE 480 (574)
T ss_pred HHhheeEEcccchhhcc-cHHHHhhcCC----C-ccCH----HHHHHHHHHcCCHHHHcCccccCchhc-CCCCCCCHHH
Confidence 78899999999999975 9999998752 1 1222 34677788888764 3578888 4477899999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecC
Q 046786 183 RKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGK 262 (604)
Q Consensus 183 rqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~ 262 (604)
|||++|||+|+++|++++||||||+||+.++..+.+.|+++. +|+|+|+++|+++ . ...+|++++| ++|+++..|+
T Consensus 481 rqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~-~-~~~~d~i~~l-~~G~i~~~g~ 556 (574)
T PRK11160 481 QRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLT-G-LEQFDRICVM-DNGQIIEQGT 556 (574)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChh-H-HHhCCEEEEE-eCCeEEEeCC
Confidence 999999999999999999999999999999999999999986 4899999999986 3 4569999999 8999999999
Q ss_pred hhhHH
Q 046786 263 GEDVI 267 (604)
Q Consensus 263 ~~~~~ 267 (604)
.+++.
T Consensus 557 ~~~l~ 561 (574)
T PRK11160 557 HQELL 561 (574)
T ss_pred HHHHH
Confidence 88775
No 265
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.9e-38 Score=313.21 Aligned_cols=195 Identities=28% Similarity=0.436 Sum_probs=164.2
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-hccc
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-EVKR 111 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-~~~~ 111 (604)
++..|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ |++|+|.++|+++.. ..++
T Consensus 3 l~~~~l~~~~----~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~~~ 73 (207)
T PRK13539 3 LEGEDLACVR----GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP-----PAAGTIKLDGGDIDDPDVAE 73 (207)
T ss_pred EEEEeEEEEE----CCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEeCcchhhHh
Confidence 4555655543 23569999999999999999999999999999999999875 579999999988642 2567
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHH
Q 046786 112 RTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQE 191 (604)
Q Consensus 112 ~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~ 191 (604)
.++|++|++.+++.+||+||+.+..... ... .+.++++++.+||.+..+ ..++.||||||||++||++
T Consensus 74 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~~~----~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrl~la~a 141 (207)
T PRK13539 74 ACHYLGHRNAMKPALTVAENLEFWAAFL---GGE----ELDIAAALEAVGLAPLAH-----LPFGYLSAGQKRRVALARL 141 (207)
T ss_pred hcEEecCCCcCCCCCcHHHHHHHHHHhc---CCc----HHHHHHHHHHcCCHHHHc-----CChhhcCHHHHHHHHHHHH
Confidence 8999999998888999999998765432 111 234788999999987655 4456999999999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEE
Q 046786 192 LLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLL 251 (604)
Q Consensus 192 L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll 251 (604)
|+.+|++++|||||+|||+.+...+.+.|++++++|+|||+++|++. ++.. |+++.+
T Consensus 142 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~--~~~~~~ 198 (207)
T PRK13539 142 LVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL-GLPG--ARELDL 198 (207)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-hhcc--CcEEee
Confidence 99999999999999999999999999999999888999999999975 4444 888777
No 266
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=1.4e-38 Score=334.76 Aligned_cols=186 Identities=30% Similarity=0.548 Sum_probs=164.4
Q ss_pred EECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCC
Q 046786 67 ILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSL 144 (604)
Q Consensus 67 IlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~ 144 (604)
|+||||||||||||+|+|+.+ |++|+|.++|+++.. ..++.++|++|++.+++.+||+||+.|+...+ ..
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~-----p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~ 72 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ-----PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KV 72 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC-----CCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CC
Confidence 689999999999999999985 579999999998743 34568999999999999999999999986542 23
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 046786 145 KREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLA 224 (604)
Q Consensus 145 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la 224 (604)
++++..++++++++.+||.+..+ +.+++|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus 73 ~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~ 147 (325)
T TIGR01187 73 PRAEIKPRVLEALRLVQLEEFAD-----RKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQ 147 (325)
T ss_pred CHHHHHHHHHHHHHHcCCcchhc-----CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 44455567899999999987766 4567999999999999999999999999999999999999999999999998
Q ss_pred hC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 225 EG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 225 ~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
++ |+|||++||++. ++..++|++++| ++|+++..|+++++.
T Consensus 148 ~~~g~tiiivTHd~~-e~~~~~d~i~vl-~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 148 EQLGITFVFVTHDQE-EAMTMSDRIAIM-RKGKIAQIGTPEEIY 189 (325)
T ss_pred HhcCCEEEEEeCCHH-HHHHhCCEEEEE-ECCEEEEEcCHHHHH
Confidence 65 899999999975 678899999999 899999999998874
No 267
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.6e-38 Score=311.97 Aligned_cols=192 Identities=21% Similarity=0.334 Sum_probs=161.1
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh---hc
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---EV 109 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---~~ 109 (604)
++..|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++.. ..
T Consensus 2 l~~~~l~~~~----~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~v~~~g~~~~~~~~~~ 72 (200)
T PRK13540 2 LDVIELDFDY----HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN-----PEKGEILFERQSIKKDLCTY 72 (200)
T ss_pred EEEEEEEEEe----CCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeeEEECCCccccCHHHH
Confidence 3445655443 24569999999999999999999999999999999999985 579999999998742 45
Q ss_pred cccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHH
Q 046786 110 KRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIG 189 (604)
Q Consensus 110 ~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia 189 (604)
++.++|++|+..+++.+||+||+.+..... .. ...+.++++.+++.+..+. .+..||||||||++||
T Consensus 73 ~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~------~~--~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~~rv~la 139 (200)
T PRK13540 73 QKQLCFVGHRSGINPYLTLRENCLYDIHFS------PG--AVGITELCRLFSLEHLIDY-----PCGLLSSGQKRQVALL 139 (200)
T ss_pred HhheEEeccccccCcCCCHHHHHHHHHhcC------cc--hHHHHHHHHHcCCchhhhC-----ChhhcCHHHHHHHHHH
Confidence 678999999998888999999998864211 11 2367889999999876553 4558999999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeE
Q 046786 190 QELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKI 248 (604)
Q Consensus 190 ~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v 248 (604)
++|+.+|++++|||||+|||+.++..+.+.|++++++|.|||+++|++. ....+|..
T Consensus 140 ral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~~~~~d~~ 196 (200)
T PRK13540 140 RLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL--PLNKADYE 196 (200)
T ss_pred HHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch--hccccchh
Confidence 9999999999999999999999999999999999878999999999975 33556644
No 268
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.8e-38 Score=325.93 Aligned_cols=212 Identities=21% Similarity=0.349 Sum_probs=173.4
Q ss_pred eeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----hc
Q 046786 34 KKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----EV 109 (604)
Q Consensus 34 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~~ 109 (604)
+..|+.+.+.. +.+.+|+|+|++|++||+++|+|||||||||||++|+|+++ ++|+|.++|.++.. .+
T Consensus 4 ~~~nls~~~~~--~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~------~~G~I~i~g~~i~~~~~~~l 75 (275)
T cd03289 4 TVKDLTAKYTE--GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN------TEGDIQIDGVSWNSVPLQKW 75 (275)
T ss_pred EEEEEEEEeCC--CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC------CCcEEEECCEEhhhCCHHHH
Confidence 34455444421 23469999999999999999999999999999999999974 38999999998742 45
Q ss_pred cccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC------ccCCCcCHHHH
Q 046786 110 KRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGG------RLVRGLSGGER 183 (604)
Q Consensus 110 ~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~------~~~~~LSgGer 183 (604)
++.++|+||++.+++. |++||+.... ..+. +.+.+.++.+||.+..+...+. ...+.||||||
T Consensus 76 r~~i~~v~q~~~lf~~-tv~~nl~~~~------~~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~ 144 (275)
T cd03289 76 RKAFGVIPQKVFIFSG-TFRKNLDPYG------KWSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHK 144 (275)
T ss_pred hhhEEEECCCcccchh-hHHHHhhhcc------CCCH----HHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHH
Confidence 7789999999999975 9999996321 1122 3466788889987655433321 13456999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecCh
Q 046786 184 KRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKG 263 (604)
Q Consensus 184 qRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~ 263 (604)
||++|||+|+.+|+|++|||||+|||+.+...+.+.|+++. +++|||+++|++. .+. .+|++++| ++|+++++|++
T Consensus 145 qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~-~~dri~vl-~~G~i~~~g~~ 220 (275)
T cd03289 145 QLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AML-ECQRFLVI-EENKVRQYDSI 220 (275)
T ss_pred HHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HHH-hCCEEEEe-cCCeEeecCCH
Confidence 99999999999999999999999999999999999999875 4899999999984 454 59999999 89999999999
Q ss_pred hhHHH
Q 046786 264 EDVIN 268 (604)
Q Consensus 264 ~~~~~ 268 (604)
++++.
T Consensus 221 ~~l~~ 225 (275)
T cd03289 221 QKLLN 225 (275)
T ss_pred HHHhh
Confidence 98864
No 269
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.5e-38 Score=353.96 Aligned_cols=205 Identities=24% Similarity=0.398 Sum_probs=174.9
Q ss_pred ceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-----hccccEEEEecCC---C
Q 046786 50 MILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-----EVKRRTGFVAQNN---V 121 (604)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-----~~~~~i~yv~Q~~---~ 121 (604)
.+|+|+|+++++||+++|+||||||||||||+|+|+.+ |++|+|.++|+++.. ..++.+|||+|++ .
T Consensus 266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~-----p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~ 340 (501)
T PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP-----RTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDG 340 (501)
T ss_pred CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCCCCHHHHHHCCCEEecCccccCC
Confidence 47999999999999999999999999999999999985 579999999988742 2356799999995 5
Q ss_pred CCCCCCHHHHHHHHHHhcCC---CCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCcCHHHHHHHHHHHHHhhCCC
Q 046786 122 FYPHLTVAETLVFTALLRLP---NSLKREEKVLHAEAVINQLGLA-RCRNSIIGGRLVRGLSGGERKRISIGQELLINPS 197 (604)
Q Consensus 122 l~~~lTv~e~l~f~~~~~~~---~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~ 197 (604)
+++.+||.||+.+....... .....++..++++++++.+||. +..+ +.++.|||||||||+||++|+.+|+
T Consensus 341 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~LSgGekqrv~lA~al~~~p~ 415 (501)
T PRK10762 341 LVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSME-----QAIGLLSGGNQQKVAIARGLMTRPK 415 (501)
T ss_pred CcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCcc-----CchhhCCHHHHHHHHHHHHHhhCCC
Confidence 78889999999875321110 0122334456788999999995 5556 4566999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhH
Q 046786 198 LLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266 (604)
Q Consensus 198 illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~ 266 (604)
+|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+..++|++++| ++|+++..|+++++
T Consensus 416 lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l-~~G~i~~~~~~~~~ 482 (501)
T PRK10762 416 VLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVM-HEGRISGEFTREQA 482 (501)
T ss_pred EEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEE-ECCEEEEEeccccC
Confidence 99999999999999999999999999888999999999985 678899999999 89999999987765
No 270
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.6e-38 Score=316.56 Aligned_cols=206 Identities=23% Similarity=0.370 Sum_probs=166.3
Q ss_pred eeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----hc
Q 046786 34 KKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----EV 109 (604)
Q Consensus 34 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~~ 109 (604)
+..|+.+.+.. .++.+|+|+|+++++||+++|+||||||||||+++|+|..+ |++|+|.++|.++.. .+
T Consensus 4 ~~~~l~~~~~~--~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~~~~ 76 (221)
T cd03244 4 EFKNVSLRYRP--NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE-----LSSGSILIDGVDISKIGLHDL 76 (221)
T ss_pred EEEEEEEecCC--CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCCEEEECCEEhHhCCHHHH
Confidence 34455444321 23569999999999999999999999999999999999875 579999999998742 45
Q ss_pred cccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCccCCCcCHHH
Q 046786 110 KRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRN-------SIIGGRLVRGLSGGE 182 (604)
Q Consensus 110 ~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~vg~~~~~~LSgGe 182 (604)
++.++|++|++.+++ .||+||+.+.. .... +++.+.++.+++.+..+ +.. ++.++.|||||
T Consensus 77 ~~~i~~~~q~~~l~~-~tv~enl~~~~------~~~~----~~~~~~~~~~~l~~~~~~l~~~l~~~~-~~~~~~LS~G~ 144 (221)
T cd03244 77 RSRISIIPQDPVLFS-GTIRSNLDPFG------EYSD----EELWQALERVGLKEFVESLPGGLDTVV-EEGGENLSVGQ 144 (221)
T ss_pred hhhEEEECCCCcccc-chHHHHhCcCC------CCCH----HHHHHHHHHhCcHHHHHhccccccccc-ccCCCcCCHHH
Confidence 678999999998776 59999996431 1111 23555666666654332 122 24678999999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecC
Q 046786 183 RKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGK 262 (604)
Q Consensus 183 rqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~ 262 (604)
|||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||+++|++. .+. .+|++++| ++|++++.|+
T Consensus 145 ~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~-~~d~i~~l-~~g~~~~~~~ 220 (221)
T cd03244 145 RQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLD-TII-DSDRILVL-DKGRVVEFDS 220 (221)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HHh-hCCEEEEE-ECCeEEecCC
Confidence 9999999999999999999999999999999999999999865 689999999986 444 49999999 8999998876
No 271
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-38 Score=305.54 Aligned_cols=160 Identities=35% Similarity=0.661 Sum_probs=145.4
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh------hccccEEEEecCCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA------EVKRRTGFVAQNNV 121 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~------~~~~~i~yv~Q~~~ 121 (604)
++.+++|+|+++++||+++|+||||||||||+|+|+|.++ |++|+|.++|+++.. ..++.++|++|++.
T Consensus 12 ~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 86 (178)
T cd03229 12 QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE-----PDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFA 86 (178)
T ss_pred CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEccccchhHHHHhhcEEEEecCCc
Confidence 3569999999999999999999999999999999999985 579999999988642 34578999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEE
Q 046786 122 FYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFL 201 (604)
Q Consensus 122 l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illL 201 (604)
+++.+|++||+.+. ||||||||++||++|+.+|++++|
T Consensus 87 ~~~~~t~~~~l~~~------------------------------------------lS~G~~qr~~la~al~~~p~llil 124 (178)
T cd03229 87 LFPHLTVLENIALG------------------------------------------LSGGQQQRVALARALAMDPDVLLL 124 (178)
T ss_pred cCCCCCHHHheeec------------------------------------------CCHHHHHHHHHHHHHHCCCCEEEE
Confidence 98889999988542 999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCe
Q 046786 202 DEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGS 256 (604)
Q Consensus 202 DEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~ 256 (604)
||||+|||+.++..+.+.|++++++ |+|+|+++|++. .+...+|++++| ++|+
T Consensus 125 DEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l-~~g~ 178 (178)
T cd03229 125 DEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVL-RDGK 178 (178)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEE-eCCC
Confidence 9999999999999999999999987 899999999975 577789999999 7774
No 272
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2e-38 Score=352.91 Aligned_cols=206 Identities=23% Similarity=0.371 Sum_probs=174.1
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-----hccccEEEEecCC--
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-----EVKRRTGFVAQNN-- 120 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-----~~~~~i~yv~Q~~-- 120 (604)
++.+|+|+|+++++||+++|+||||||||||||+|+|..++ +++|+|.++|+++.. ..++.+|||+|+.
T Consensus 272 ~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p----~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~ 347 (500)
T TIGR02633 272 HRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG----KFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKR 347 (500)
T ss_pred cccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC----CCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhh
Confidence 35699999999999999999999999999999999999852 368999999998742 2356799999995
Q ss_pred -CCCCCCCHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCcCHHHHHHHHHHHHHhhCC
Q 046786 121 -VFYPHLTVAETLVFTALLRLP--NSLKREEKVLHAEAVINQLGLAR-CRNSIIGGRLVRGLSGGERKRISIGQELLINP 196 (604)
Q Consensus 121 -~l~~~lTv~e~l~f~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p 196 (604)
.+++.+||+||+.++..-... ........+++++++++.+++.+ ..+ +.++.|||||||||+||++|+.+|
T Consensus 348 ~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~LSgGqkqrv~la~al~~~p 422 (500)
T TIGR02633 348 HGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPF-----LPIGRLSGGNQQKAVLAKMLLTNP 422 (500)
T ss_pred CCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCcc-----CccccCCHHHHHHHHHHHHHhhCC
Confidence 588999999999875421111 01223344567889999999964 455 445699999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChh
Q 046786 197 SLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGE 264 (604)
Q Consensus 197 ~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~ 264 (604)
++|+|||||+|||+.++..+.+.|++++++|.|||++|||+. .+.+++|++++| ++|+++..++.+
T Consensus 423 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l-~~G~i~~~~~~~ 488 (500)
T TIGR02633 423 RVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVI-GEGKLKGDFVNH 488 (500)
T ss_pred CEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEE-ECCEEEEEEccc
Confidence 999999999999999999999999999888999999999985 678899999999 899999887654
No 273
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=7.7e-38 Score=339.92 Aligned_cols=214 Identities=25% Similarity=0.368 Sum_probs=177.5
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccc
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKR 111 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~ 111 (604)
+++..|+.+..... ..+.+|+|+||++++|++++|+|||||||||||++|+|+.+ |++|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~-~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~-----P~sGeI~I~G~~~------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDG-EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM-----PNKGTVDIKGSAA------ 88 (549)
T ss_pred eeEEEEEEEecCCC-ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC-----CCceEEEECCEee------
Confidence 45666665543221 23569999999999999999999999999999999999985 5799999999752
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHH
Q 046786 112 RTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQE 191 (604)
Q Consensus 112 ~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~ 191 (604)
++.+...+.+.+|++||+.+..... ..+.++..++++++++.++|.+..+ +.++.||||||||++||++
T Consensus 89 ---~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld-----~~~~~LSGGQrQRVaLArA 157 (549)
T PRK13545 89 ---LIAISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIY-----QPVKTYSSGMKSRLGFAIS 157 (549)
T ss_pred ---eEEeccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhh-----CCcccCCHHHHHHHHHHHH
Confidence 2233445677789999998765332 2334444566888999999987766 4466999999999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHHHHH
Q 046786 192 LLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVINYF 270 (604)
Q Consensus 192 L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~~~f 270 (604)
|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|++. .+..++|++++| .+|++++.|+++++.+-|
T Consensus 158 L~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL-~~GkIv~~G~~~el~~~~ 234 (549)
T PRK13545 158 VHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWL-HYGQVKEYGDIKEVVDHY 234 (549)
T ss_pred HHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEE-ECCEEEEECCHHHHHhhH
Confidence 99999999999999999999999999999999878999999999975 677889999999 899999999998876543
No 274
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.3e-38 Score=353.63 Aligned_cols=209 Identities=23% Similarity=0.318 Sum_probs=175.7
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+++.+ +++.+|+|+|+++++||+++|+||||||||||||+|+|+++ |++|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~----~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~-----p~~G~i~~~~~~~~~~~~~ 73 (490)
T PRK10938 3 SLQISQGTFRL----SDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP-----LLSGERQSQFSHITRLSFE 73 (490)
T ss_pred eEEEEeEEEEc----CCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCceEEECCcccccCCHH
Confidence 45666666554 23459999999999999999999999999999999999985 579999999977532
Q ss_pred hccccEEEEecCCCC--C-C-----CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcC
Q 046786 108 EVKRRTGFVAQNNVF--Y-P-----HLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLS 179 (604)
Q Consensus 108 ~~~~~i~yv~Q~~~l--~-~-----~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 179 (604)
..++.++|++|++.. + + .+||+|++.+. .+..++++++++.+||.+..+ +.+.+||
T Consensus 74 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS 137 (490)
T PRK10938 74 QLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLD-----RRFKYLS 137 (490)
T ss_pred HHHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhh-----CCcccCC
Confidence 234569999998642 1 1 46888877531 122356889999999987766 4566999
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEE
Q 046786 180 GGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLY 259 (604)
Q Consensus 180 gGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~ 259 (604)
|||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.+|++++| ++|+++.
T Consensus 138 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~v~~l-~~G~i~~ 215 (490)
T PRK10938 138 TGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD-EIPDFVQFAGVL-ADCTLAE 215 (490)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCEEEEE-ECCEEEE
Confidence 99999999999999999999999999999999999999999999888999999999985 677899999999 8999999
Q ss_pred ecChhhHH
Q 046786 260 FGKGEDVI 267 (604)
Q Consensus 260 ~G~~~~~~ 267 (604)
.|+++++.
T Consensus 216 ~~~~~~~~ 223 (490)
T PRK10938 216 TGEREEIL 223 (490)
T ss_pred eCCHHHHh
Confidence 99887653
No 275
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=8.6e-39 Score=369.84 Aligned_cols=213 Identities=23% Similarity=0.363 Sum_probs=177.7
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~ 108 (604)
++..|+++.+. .++.+|+|+|+++++||.+||+||||||||||+|+|+|+++ |++|+|++||.++.. .
T Consensus 474 I~~~~vsf~y~---~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~-----p~~G~I~idg~~i~~~~~~~ 545 (708)
T TIGR01193 474 IVINDVSYSYG---YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ-----ARSGEILLNGFSLKDIDRHT 545 (708)
T ss_pred EEEEEEEEEcC---CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCcEEEECCEEHHHcCHHH
Confidence 45556655542 23579999999999999999999999999999999999986 679999999998743 5
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCCCcCHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGL-------ARCRNSIIGGRLVRGLSGG 181 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgG 181 (604)
+|+.+|||+|++.+|+. |++||+.++.. + ..+++ ++.+.++..|+ .+-.||.+|+ ....||||
T Consensus 546 lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~---~-~~~~~----~i~~a~~~a~l~~~i~~lp~gldt~i~e-~G~~LSgG 615 (708)
T TIGR01193 546 LRQFINYLPQEPYIFSG-SILENLLLGAK---E-NVSQD----EIWAACEIAEIKDDIENMPLGYQTELSE-EGSSISGG 615 (708)
T ss_pred HHHheEEEecCceehhH-HHHHHHhccCC---C-CCCHH----HHHHHHHHhCCHHHHHhcccccCcEecC-CCCCCCHH
Confidence 78899999999999976 99999987521 1 22332 23444444444 3456888884 56789999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 182 ERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 182 erqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
||||++|||||+++|++|+||||||+||+.+...+.+.|+++ +|+|+|+++|+++ ....+|++++| ++|+++..|
T Consensus 616 QrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l-~~G~i~~~G 690 (708)
T TIGR01193 616 QKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVL-DHGKIIEQG 690 (708)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEE-ECCEEEEEC
Confidence 999999999999999999999999999999999999999985 4799999999985 45789999999 899999999
Q ss_pred ChhhHHH
Q 046786 262 KGEDVIN 268 (604)
Q Consensus 262 ~~~~~~~ 268 (604)
+.+++.+
T Consensus 691 ~~~~L~~ 697 (708)
T TIGR01193 691 SHDELLD 697 (708)
T ss_pred CHHHHHh
Confidence 9888754
No 276
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1.1e-38 Score=368.06 Aligned_cols=215 Identities=27% Similarity=0.489 Sum_probs=179.6
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~ 108 (604)
++..|+++.+.. .++.+|+|+|+++++||.+||+||||||||||+|+|+|+++ |++|+|.+||.++.. .
T Consensus 464 I~~~~vsf~Y~~--~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~-----p~~G~I~idg~~l~~~~~~~ 536 (694)
T TIGR03375 464 IEFRNVSFAYPG--QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ-----PTEGSVLLDGVDIRQIDPAD 536 (694)
T ss_pred EEEEEEEEEeCC--CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEEhhhCCHHH
Confidence 455566555421 24569999999999999999999999999999999999986 679999999999853 5
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCCCcCHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGL-------ARCRNSIIGGRLVRGLSGG 181 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgG 181 (604)
+|+.++||+|++.+|+. |++||+.++. | ..+++ ++.+.++..++ .+-.||.+|+ ....||||
T Consensus 537 lr~~i~~v~Q~~~lf~~-TI~eNi~~~~----~-~~~~~----~i~~a~~~~~l~~~i~~lp~gl~T~i~e-~G~~LSgG 605 (694)
T TIGR03375 537 LRRNIGYVPQDPRLFYG-TLRDNIALGA----P-YADDE----EILRAAELAGVTEFVRRHPDGLDMQIGE-RGRSLSGG 605 (694)
T ss_pred HHhccEEECCChhhhhh-hHHHHHhCCC----C-CCCHH----HHHHHHHHcChHHHHHhCcccccceecC-CCCCCCHH
Confidence 78899999999999975 9999998752 1 22333 34444454443 4456888884 46789999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 182 ERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 182 erqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
||||++|||+|+++|++++||||||+||+.+...+.+.|+++.+ ++|+|+++|+++ ....+|++++| ++|+++..|
T Consensus 606 QrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl~--~~~~~D~iivl-~~G~i~e~G 681 (694)
T TIGR03375 606 QRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTS--LLDLVDRIIVM-DNGRIVADG 681 (694)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEE-eCCEEEeeC
Confidence 99999999999999999999999999999999999999999874 799999999985 45789999999 899999999
Q ss_pred ChhhHHHH
Q 046786 262 KGEDVINY 269 (604)
Q Consensus 262 ~~~~~~~~ 269 (604)
+.+++++.
T Consensus 682 ~~~eLl~~ 689 (694)
T TIGR03375 682 PKDQVLEA 689 (694)
T ss_pred CHHHHHHH
Confidence 98887653
No 277
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-38 Score=353.83 Aligned_cols=205 Identities=21% Similarity=0.357 Sum_probs=174.3
Q ss_pred ceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-----hccccEEEEecCC---C
Q 046786 50 MILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-----EVKRRTGFVAQNN---V 121 (604)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-----~~~~~i~yv~Q~~---~ 121 (604)
.+++|+|+++++||+++|+||||||||||||+|+|+.+ |++|+|.++|+++.. ..++.++|++|++ .
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 341 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR-----RTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEG 341 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc-----CCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCC
Confidence 58999999999999999999999999999999999985 579999999998642 2356799999986 4
Q ss_pred CCCCCCHHHHHHHHHHhcC-CCC--CCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCcCHHHHHHHHHHHHHhhCCC
Q 046786 122 FYPHLTVAETLVFTALLRL-PNS--LKREEKVLHAEAVINQLGLA-RCRNSIIGGRLVRGLSGGERKRISIGQELLINPS 197 (604)
Q Consensus 122 l~~~lTv~e~l~f~~~~~~-~~~--~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~ 197 (604)
+++.+|+.||+.+...... +.. ....+.++.++++++.+|+. +..++ .+..|||||||||+||++|+.+|+
T Consensus 342 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgGq~qrl~la~al~~~p~ 416 (501)
T PRK11288 342 IIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQ-----LIMNLSGGNQQKAILGRWLSEDMK 416 (501)
T ss_pred CcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccC-----ccccCCHHHHHHHHHHHHHccCCC
Confidence 8889999999987532111 001 12233345688999999994 56664 456999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhH
Q 046786 198 LLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266 (604)
Q Consensus 198 illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~ 266 (604)
+|||||||+|||+.+...+++.|++++++|.|||++|||+. .+.+++|+++++ ++|++++.|+++++
T Consensus 417 lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l-~~g~i~~~~~~~~~ 483 (501)
T PRK11288 417 VILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVM-REGRIAGELAREQA 483 (501)
T ss_pred EEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEE-ECCEEEEEEccccC
Confidence 99999999999999999999999999988999999999975 688999999999 89999999987653
No 278
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3e-38 Score=339.72 Aligned_cols=209 Identities=27% Similarity=0.410 Sum_probs=186.5
Q ss_pred eccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-----hccccEEEEe
Q 046786 43 KNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-----EVKRRTGFVA 117 (604)
Q Consensus 43 ~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-----~~~~~i~yv~ 117 (604)
.++++..++|+||||++++||++||+|.||||||||+|+|+|.++ |++|+|.++|++... .....|+.|.
T Consensus 15 ~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~-----p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~ 89 (500)
T COG1129 15 SKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP-----PDSGEILIDGKPVAFSSPRDALAAGIATVH 89 (500)
T ss_pred eEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc-----CCCceEEECCEEccCCCHHHHHhCCcEEEe
Confidence 344567789999999999999999999999999999999999986 689999999998742 3456799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCC
Q 046786 118 QNNVFYPHLTVAETLVFTALLRLP-NSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINP 196 (604)
Q Consensus 118 Q~~~l~~~lTv~e~l~f~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p 196 (604)
|+..++|+|||.||+.++...+.+ ..+.++...+++.++|+.+|+....++.|+ +||+||||-|.||+||..++
T Consensus 90 QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~-----~LsiaqrQ~VeIArAl~~~a 164 (500)
T COG1129 90 QELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG-----DLSIAQRQMVEIARALSFDA 164 (500)
T ss_pred echhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh-----hCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999887654432 235667778889999999999644666655 99999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecCh
Q 046786 197 SLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKG 263 (604)
Q Consensus 197 ~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~ 263 (604)
+|++|||||+.|+...+..+.+.+++++++|.+||+++|... ++++.+|++.+| ++|+.+..++.
T Consensus 165 rllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVl-RDG~~v~~~~~ 229 (500)
T COG1129 165 RVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVL-RDGRVVGTRPT 229 (500)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEE-eCCEEeeeccc
Confidence 999999999999999999999999999999999999999975 899999999999 99999998883
No 279
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=1.2e-38 Score=367.94 Aligned_cols=213 Identities=25% Similarity=0.423 Sum_probs=175.1
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~ 108 (604)
++..|+++.+.. .+++.+|+|+|++++|||.+||+||||||||||+|+|+|.++ |++|+|.+||+++.+ .
T Consensus 479 I~~~nVsf~Y~~-~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~-----p~~G~I~idg~~i~~~~~~~ 552 (711)
T TIGR00958 479 IEFQDVSFSYPN-RPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ-----PTGGQVLLDGVPLVQYDHHY 552 (711)
T ss_pred EEEEEEEEECCC-CCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC-----CCCCEEEECCEEHHhcCHHH
Confidence 555666655432 123579999999999999999999999999999999999986 679999999999853 5
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCCCcCHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLA-------RCRNSIIGGRLVRGLSGG 181 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgG 181 (604)
++++++||+|++.+|+. |++||+.++. + ..++ +.+.++++..++. +-.||.+|+ ....||||
T Consensus 553 lr~~i~~v~Q~~~lF~g-TIreNI~~g~----~-~~~~----e~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSGG 621 (711)
T TIGR00958 553 LHRQVALVGQEPVLFSG-SVRENIAYGL----T-DTPD----EEIMAAAKAANAHDFIMEFPNGYDTEVGE-KGSQLSGG 621 (711)
T ss_pred HHhhceEEecCcccccc-CHHHHHhcCC----C-CCCH----HHHHHHHHHcCCHHHHHhCCCccCCcccC-CCCcCCHH
Confidence 67899999999999975 9999998752 1 1222 2355566666554 346888884 46789999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 182 ERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 182 erqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
||||++|||+|+++|+|++||||||+||+.+...+.+ .. ..+++|+|+++|+++ ....+|++++| ++|+++..|
T Consensus 622 QkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL-~~G~ive~G 695 (711)
T TIGR00958 622 QKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVL-KKGSVVEMG 695 (711)
T ss_pred HHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEE-ECCEEEEee
Confidence 9999999999999999999999999999999999988 22 235899999999985 45679999999 899999999
Q ss_pred ChhhHHH
Q 046786 262 KGEDVIN 268 (604)
Q Consensus 262 ~~~~~~~ 268 (604)
+.+++.+
T Consensus 696 t~~eL~~ 702 (711)
T TIGR00958 696 THKQLME 702 (711)
T ss_pred CHHHHHh
Confidence 9988764
No 280
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-37 Score=300.66 Aligned_cols=232 Identities=31% Similarity=0.420 Sum_probs=199.0
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+.+.+..+ +.||++||++|++||+.+||||||||||||.++|+|.-. ..+++|+|.++|+++..
T Consensus 3 ~L~I~dLhv~v~~~---keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~---Y~Vt~G~I~~~GedI~~l~~~ 76 (251)
T COG0396 3 MLEIKDLHVEVEGK---KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK---YEVTEGEILFDGEDILELSPD 76 (251)
T ss_pred eeEEeeeEEEecCc---hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCC---ceEecceEEECCcccccCCHh
Confidence 56778887776432 689999999999999999999999999999999999853 24789999999999853
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCcCHHHHHH
Q 046786 108 -EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLAR-CRNSIIGGRLVRGLSGGERKR 185 (604)
Q Consensus 108 -~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqR 185 (604)
..|+.+...+|.|.-+|..|+.+.|..+...+........+..+.+++.++.+++.. .++..+. .++|||||||
T Consensus 77 ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN----~GFSGGEkKR 152 (251)
T COG0396 77 ERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN----EGFSGGEKKR 152 (251)
T ss_pred HHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC----CCcCcchHHH
Confidence 456789999999999999999999998876543221113455677899999999987 4554443 4899999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhc--CeEEEEecCCeEEEecCh
Q 046786 186 ISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMF--NKILLLSSDGSSLYFGKG 263 (604)
Q Consensus 186 vsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~--d~v~ll~~~G~~v~~G~~ 263 (604)
..|+..++.+|++.+||||-||||..+-..|-+.++++++.|.+++++||.. .+..+. |++.+| .+|+++..|.+
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl-~~GrIv~sG~~ 229 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVL-YDGRIVKSGDP 229 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEE-ECCEEEecCCH
Confidence 9999999999999999999999999999999999999999999999999985 566776 999999 89999999999
Q ss_pred hhHHHHHHhCCCCC
Q 046786 264 EDVINYFAGIGYVP 277 (604)
Q Consensus 264 ~~~~~~f~~~g~~~ 277 (604)
++.++++..||.|
T Consensus 230 -el~~~le~~gy~~ 242 (251)
T COG0396 230 -ELAEELEEKGYDW 242 (251)
T ss_pred -HHHHHHHHhchHH
Confidence 8999999999864
No 281
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2.7e-38 Score=352.39 Aligned_cols=204 Identities=24% Similarity=0.340 Sum_probs=171.6
Q ss_pred eeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-----hccccEEEEecCC---CC
Q 046786 51 ILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-----EVKRRTGFVAQNN---VF 122 (604)
Q Consensus 51 iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-----~~~~~i~yv~Q~~---~l 122 (604)
+|+|+|+++++||+++|+||||||||||||+|+|+.+ |++|+|.++|+++.. ..++.++|++|++ .+
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l 352 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP-----ARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGL 352 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCc
Confidence 6999999999999999999999999999999999985 579999999998742 1345799999984 47
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEE
Q 046786 123 YPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLA-RCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFL 201 (604)
Q Consensus 123 ~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illL 201 (604)
++.+|+.|++......+.+........++.++++++.+||. +..+ +.++.|||||||||+||++|+.+|++|||
T Consensus 353 ~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~LSgG~kqrl~la~al~~~p~lLlL 427 (510)
T PRK15439 353 YLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAE-----QAARTLSGGNQQKVLIAKCLEASPQLLIV 427 (510)
T ss_pred cCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCcc-----CccccCCcHHHHHHHHHHHHhhCCCEEEE
Confidence 88899999986432111111111222345688999999997 5666 44569999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhH
Q 046786 202 DEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266 (604)
Q Consensus 202 DEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~ 266 (604)
||||+|||+.++..+.+.|++++++|.|||+++||+. .+.+++|++++| ++|++++.|.++++
T Consensus 428 DEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l-~~G~i~~~~~~~~~ 490 (510)
T PRK15439 428 DEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVM-HQGEISGALTGAAI 490 (510)
T ss_pred CCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEE-ECCEEEEEEccccC
Confidence 9999999999999999999999888999999999985 688899999999 89999998877543
No 282
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=4.7e-38 Score=301.72 Aligned_cols=155 Identities=36% Similarity=0.641 Sum_probs=141.7
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----hccccEEEEecCCCCCC
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----EVKRRTGFVAQNNVFYP 124 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~ 124 (604)
+.+++|+|+++++||+++|+|||||||||||++|+|..+ |++|+|.++|+++.. ..++.++|++|++.+++
T Consensus 15 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (173)
T cd03246 15 PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR-----PTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFS 89 (173)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC-----CCCCeEEECCEEcccCCHHHHHhheEEECCCCcccc
Confidence 469999999999999999999999999999999999985 579999999998742 34678999999998887
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 046786 125 HLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEP 204 (604)
Q Consensus 125 ~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEP 204 (604)
. ||+||+ ||||||||++||++|+++|++++||||
T Consensus 90 ~-tv~~~l---------------------------------------------LS~G~~qrv~la~al~~~p~~lllDEP 123 (173)
T cd03246 90 G-SIAENI---------------------------------------------LSGGQRQRLGLARALYGNPRILVLDEP 123 (173)
T ss_pred C-cHHHHC---------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 4 999987 999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeE
Q 046786 205 TSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSS 257 (604)
Q Consensus 205 tsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~ 257 (604)
|+|||+.++..+.+.|++++++|+|||+++|++. .+ ..+|++++| ++|++
T Consensus 124 t~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l-~~G~i 173 (173)
T cd03246 124 NSHLDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADRILVL-EDGRV 173 (173)
T ss_pred ccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEE-ECCCC
Confidence 9999999999999999999878999999999985 45 679999999 78864
No 283
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=6.1e-38 Score=302.26 Aligned_cols=161 Identities=33% Similarity=0.554 Sum_probs=144.9
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh---hccccEEEEecCCCCCCC
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---EVKRRTGFVAQNNVFYPH 125 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---~~~~~i~yv~Q~~~l~~~ 125 (604)
+.+++|+|+++++||+++|+||||||||||||+|+|..+ |++|+|.++|+++.. ..++.++|++|++.+++
T Consensus 15 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~- 88 (178)
T cd03247 15 QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK-----PQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFD- 88 (178)
T ss_pred ccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeec-
Confidence 369999999999999999999999999999999999975 579999999998742 35678999999998876
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 046786 126 LTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPT 205 (604)
Q Consensus 126 lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPt 205 (604)
.|++||+ +..||||||||++|||+|+.+|++++|||||
T Consensus 89 ~tv~~~i------------------------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~ 126 (178)
T cd03247 89 TTLRNNL------------------------------------------GRRFSGGERQRLALARILLQDAPIVLLDEPT 126 (178)
T ss_pred ccHHHhh------------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 6999887 2389999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 206 SGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 206 sgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
+|||+.++..+++.|++++ +|.|||+++|++. .+ ..+|++++| ++|++++.|
T Consensus 127 ~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~~~~l-~~g~i~~~~ 178 (178)
T cd03247 127 VGLDPITERQLLSLIFEVL-KDKTLIWITHHLT-GI-EHMDKILFL-ENGKIIMQG 178 (178)
T ss_pred ccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HhCCEEEEE-ECCEEEecC
Confidence 9999999999999999996 4899999999986 45 469999999 899998764
No 284
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=3.2e-38 Score=354.71 Aligned_cols=216 Identities=31% Similarity=0.516 Sum_probs=175.6
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~ 108 (604)
++..|+++.+. .+++.+|+|+|+++++||.++|+||||||||||+|+|+|.++ |++|+|.+||.++.. .
T Consensus 317 i~~~~v~~~y~--~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~i~~~~~~~ 389 (544)
T TIGR01842 317 LSVENVTIVPP--GGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWP-----PTSGSVRLDGADLKQWDRET 389 (544)
T ss_pred EEEEEEEEEcC--CCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEehhhCCHHH
Confidence 44555555432 123579999999999999999999999999999999999985 579999999998753 4
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCccCCCcCHHHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVL-----HAEAVINQLGLARCRNSIIGGRLVRGLSGGER 183 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 183 (604)
+++.++||+|++.+++. |++||+.+.. + ..++++-.+ ..++.++.+ .+-.||.+| +....||||||
T Consensus 390 ~~~~i~~v~q~~~lf~~-ti~~Ni~~~~----~-~~~~~~~~~~~~~~~~~~~i~~l--~~gl~t~~~-~~g~~LSgGq~ 460 (544)
T TIGR01842 390 FGKHIGYLPQDVELFPG-TVAENIARFG----E-NADPEKIIEAAKLAGVHELILRL--PDGYDTVIG-PGGATLSGGQR 460 (544)
T ss_pred HhhheEEecCCcccccc-cHHHHHhccC----C-CCCHHHHHHHHHHhChHHHHHhC--ccccccccC-CCcCCCCHHHH
Confidence 67899999999999986 9999997532 1 123332111 123344433 334567777 45778999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecCh
Q 046786 184 KRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKG 263 (604)
Q Consensus 184 qRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~ 263 (604)
||++|||+|+++|++++|||||+|||+.++..+.+.|+++..+|+|+|+++|+++ ..+.+|++++| ++|+++..|+.
T Consensus 461 qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l-~~G~i~~~g~~ 537 (544)
T TIGR01842 461 QRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVL-QDGRIARFGER 537 (544)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEE-ECCEEEeeCCH
Confidence 9999999999999999999999999999999999999999767899999999985 45789999999 89999999998
Q ss_pred hhHH
Q 046786 264 EDVI 267 (604)
Q Consensus 264 ~~~~ 267 (604)
+++.
T Consensus 538 ~~l~ 541 (544)
T TIGR01842 538 DEVL 541 (544)
T ss_pred HHHh
Confidence 7764
No 285
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=3.7e-38 Score=321.32 Aligned_cols=213 Identities=20% Similarity=0.338 Sum_probs=166.9
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~ 108 (604)
++..|+.+.+.. ..+.+|+|+|+++++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.. .
T Consensus 20 i~~~~l~~~~~~--~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~i~g~~i~~~~~~~ 92 (257)
T cd03288 20 IKIHDLCVRYEN--NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD-----IFDGKIVIDGIDISKLPLHT 92 (257)
T ss_pred EEEEEEEEEeCC--CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC-----CCCCeEEECCEEhhhCCHHH
Confidence 445555554422 12569999999999999999999999999999999999985 579999999998743 4
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHH-----HHHHHHHHHc--CCCccccccccCccCCCcCHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKV-----LHAEAVINQL--GLARCRNSIIGGRLVRGLSGG 181 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgG 181 (604)
.++.++|++|++.+++ .|++||+.... ........ ..+.+.++.+ |++. .++ +..+.||||
T Consensus 93 ~~~~i~~v~q~~~l~~-~tv~~nl~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~~l~~----~~~-~~~~~LS~G 160 (257)
T cd03288 93 LRSRLSIILQDPILFS-GSIRFNLDPEC------KCTDDRLWEALEIAQLKNMVKSLPGGLDA----VVT-EGGENFSVG 160 (257)
T ss_pred HhhhEEEECCCCcccc-cHHHHhcCcCC------CCCHHHHHHHHHHhCcHHHHhhcccccCc----Eec-cCCCcCCHH
Confidence 5678999999998887 49999985321 11111100 1123333333 3332 222 456799999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 182 ERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 182 erqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
||||++||++|+.+|++++|||||+|||+.++..+.+.|+++. ++.|||+++|++.. +. .+|++++| ++|+++..|
T Consensus 161 ~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~-~~-~~dri~~l-~~G~i~~~g 236 (257)
T cd03288 161 QRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVST-IL-DADLVLVL-SRGILVECD 236 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHH-HH-hCCEEEEE-ECCEEEEeC
Confidence 9999999999999999999999999999999999999999975 48999999999864 44 49999999 899999999
Q ss_pred ChhhHHH
Q 046786 262 KGEDVIN 268 (604)
Q Consensus 262 ~~~~~~~ 268 (604)
+++++.+
T Consensus 237 ~~~~~~~ 243 (257)
T cd03288 237 TPENLLA 243 (257)
T ss_pred CHHHHHh
Confidence 9887643
No 286
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=4.5e-38 Score=356.63 Aligned_cols=212 Identities=26% Similarity=0.457 Sum_probs=175.8
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~ 108 (604)
++..|+++.+. +++.+|+|+|++++|||.++|+|+||||||||+|+|+|+++ |++|+|.+||+++.+ .
T Consensus 335 I~~~~vsf~y~---~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~-----p~~G~I~i~g~~i~~~~~~~ 406 (588)
T PRK13657 335 VEFDDVSFSYD---NSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFD-----PQSGRILIDGTDIRTVTRAS 406 (588)
T ss_pred EEEEEEEEEeC---CCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCEEEECCEEhhhCCHHH
Confidence 44455555442 22469999999999999999999999999999999999986 579999999998853 5
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCCCcCHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGL-------ARCRNSIIGGRLVRGLSGG 181 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgG 181 (604)
+++.++||||++.+|+. |++||+.++. | ..+++ .+.+.++.+++ ++-.||.+|+ ..+.||||
T Consensus 407 ~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~-~~~d~----~i~~al~~~~l~~~i~~lp~gldt~i~~-~g~~LSgG 475 (588)
T PRK13657 407 LRRNIAVVFQDAGLFNR-SIEDNIRVGR----P-DATDE----EMRAAAERAQAHDFIERKPDGYDTVVGE-RGRQLSGG 475 (588)
T ss_pred HHhheEEEecCcccccc-cHHHHHhcCC----C-CCCHH----HHHHHHHHhCHHHHHHhCcccccchhcC-CCCCCCHH
Confidence 67899999999999975 9999998752 1 22332 24444555543 3446788874 46689999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 182 ERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 182 erqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
||||++|||+|+++|++++||||||+||+.++..+.+.|+++.+ ++|+|++||+++ ..+.+|+++.| ++|+++..|
T Consensus 476 q~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~-~~tvIiitHr~~--~~~~~D~ii~l-~~G~i~~~g 551 (588)
T PRK13657 476 ERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMK-GRTTFIIAHRLS--TVRNADRILVF-DNGRVVESG 551 (588)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEEecHH--HHHhCCEEEEE-ECCEEEEeC
Confidence 99999999999999999999999999999999999999999864 799999999985 46789999999 899999999
Q ss_pred ChhhHH
Q 046786 262 KGEDVI 267 (604)
Q Consensus 262 ~~~~~~ 267 (604)
+.++..
T Consensus 552 ~~~~l~ 557 (588)
T PRK13657 552 SFDELV 557 (588)
T ss_pred CHHHHH
Confidence 987764
No 287
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-39 Score=341.80 Aligned_cols=238 Identities=29% Similarity=0.479 Sum_probs=190.7
Q ss_pred cccccchhhhhhHHHHhhh-----hhhhhheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHH
Q 046786 9 AGIENMDEENQSQRELQKQ-----NVEDMLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALG 83 (604)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~ 83 (604)
++++|+++....+.+...+ ..+..++..|+++.+.. .+.++|+|+|+++++||-+||+|+||||||||++.|.
T Consensus 308 ~Sa~Rl~~i~~q~~e~~~~~~~~~~~~~~l~~~~vsF~y~~--~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~ 385 (573)
T COG4987 308 ASARRLNDILDQKPEVTFPDEQTATTGQALELRNVSFTYPG--QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLA 385 (573)
T ss_pred HHHHHHhhhccCCcccCCCccccCCccceeeeccceeecCC--CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHH
Confidence 4566666654433322222 11113455565554422 3446999999999999999999999999999999999
Q ss_pred cCCCCCCCCccccEEEECCEeCCh----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Q 046786 84 GRLSNGKDTVTQGHITYNGKQFSA----EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQ 159 (604)
Q Consensus 84 g~~~~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~ 159 (604)
|-.. |++|+|.+||.++.. .+++.+++++|...+|.. |+++||..+. | +.+++ .+.+.+++
T Consensus 386 ~~~~-----~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~----~-~AsDE----el~~aL~q 450 (573)
T COG4987 386 GAWD-----PQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSG-TLRDNLRLAN----P-DASDE----ELWAALQQ 450 (573)
T ss_pred hccC-----CCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHH-HHHHHHhhcC----C-CCCHH----HHHHHHHH
Confidence 9885 679999999998742 477889999999999976 9999998753 2 23333 45677888
Q ss_pred cCCCc-------cccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q 046786 160 LGLAR-------CRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILM 232 (604)
Q Consensus 160 lgL~~-------~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~ 232 (604)
+||++ -.||.+| +..+.||||||||++|||+|++|.++++|||||.|||+.+..++++.|.+-++ |+|+|+
T Consensus 451 vgL~~l~~~~p~gl~t~lg-e~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~ 528 (573)
T COG4987 451 VGLEKLLESAPDGLNTWLG-EGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLM 528 (573)
T ss_pred cCHHHHHHhChhhhhchhc-cCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEE
Confidence 88764 3466777 56789999999999999999999999999999999999999999999988775 899999
Q ss_pred EecCCchHHHhhcCeEEEEecCCeEEEecChhhHHH
Q 046786 233 TIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVIN 268 (604)
Q Consensus 233 ~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~~ 268 (604)
+||+... .+.||+|++| ++|+++..|...++..
T Consensus 529 vTHrL~~--le~~drIivl-~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 529 VTHRLRG--LERMDRIIVL-DNGKIIEEGTHAELLA 561 (573)
T ss_pred Eeccccc--HhhcCEEEEE-ECCeeeecCCHHhhhc
Confidence 9999864 5789999999 8999999999988864
No 288
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=9.7e-39 Score=367.86 Aligned_cols=218 Identities=31% Similarity=0.499 Sum_probs=180.7
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
.++..|+.+++. ++++..||+|+|+.|++|+.+||+|||||||||++++|.+.+. |++|+|++||.++..
T Consensus 350 ~ief~nV~FsYP-sRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd-----P~~G~V~idG~di~~~~~~ 423 (1228)
T KOG0055|consen 350 EIEFRNVCFSYP-SRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD-----PTSGEVLIDGEDIRNLNLK 423 (1228)
T ss_pred ceEEEEEEecCC-CCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC-----CCCceEEEcCccchhcchH
Confidence 355566555442 2335679999999999999999999999999999999999985 679999999999853
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHH-----HHHHHHHcCCCccccccccCccCCCcCHHH
Q 046786 108 EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLH-----AEAVINQLGLARCRNSIIGGRLVRGLSGGE 182 (604)
Q Consensus 108 ~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 182 (604)
.+|.+||.|.|+|.+|. .|++||+.|+. ++.++++..+. +.+.+ ..|.+-.||.+|.+.+ .|||||
T Consensus 424 ~lr~~iglV~QePvlF~-~tI~eNI~~G~-----~dat~~~i~~a~k~ana~~fi--~~lp~g~~T~vge~g~-qLSGGQ 494 (1228)
T KOG0055|consen 424 WLRSQIGLVSQEPVLFA-TTIRENIRYGK-----PDATREEIEEAAKAANAHDFI--LKLPDGYDTLVGERGV-QLSGGQ 494 (1228)
T ss_pred HHHhhcCeeeechhhhc-ccHHHHHhcCC-----CcccHHHHHHHHHHccHHHHH--HhhHHhhcccccCCCC-CCChHH
Confidence 56889999999998886 59999999863 12233332221 22222 3467788999996655 499999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecC
Q 046786 183 RKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGK 262 (604)
Q Consensus 183 rqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~ 262 (604)
|||++|||||+.+|+|||||||||+||+.+...+.+.|.+..+ |+|.|+++|+.+ .+-+ +|+++++ ++|+++..|+
T Consensus 495 KQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~-grTTivVaHRLS-tIrn-aD~I~v~-~~G~IvE~G~ 570 (1228)
T KOG0055|consen 495 KQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASK-GRTTIVVAHRLS-TIRN-ADKIAVM-EEGKIVEQGT 570 (1228)
T ss_pred HHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhc-CCeEEEEeeehh-hhhc-cCEEEEE-ECCEEEEecC
Confidence 9999999999999999999999999999999999999988764 899999999986 5554 9999999 9999999999
Q ss_pred hhhHHH
Q 046786 263 GEDVIN 268 (604)
Q Consensus 263 ~~~~~~ 268 (604)
.+|++.
T Consensus 571 h~ELi~ 576 (1228)
T KOG0055|consen 571 HDELIA 576 (1228)
T ss_pred HHHHHh
Confidence 999875
No 289
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.9e-39 Score=294.40 Aligned_cols=194 Identities=29% Similarity=0.483 Sum_probs=171.0
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----hccccEEEEecCCCC
Q 046786 47 EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----EVKRRTGFVAQNNVF 122 (604)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l 122 (604)
.+..||+++|+.+++||..+|.||||||||||||+++.+.+ |++|++++.|++++. .+|++++|+.|.+.|
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis-----p~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paL 88 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS-----PTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPAL 88 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC-----CCCceEEEcCccccccChHHHHHHHHHHHcCccc
Confidence 45679999999999999999999999999999999999985 689999999999863 688999999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEe
Q 046786 123 YPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLD 202 (604)
Q Consensus 123 ~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLD 202 (604)
|+. ||++|+.|..+.|..+. +.++..++|+.+++.+.. -++.+.+||||||||++|+|.|..-|+||+||
T Consensus 89 fg~-tVeDNlifP~~~r~rr~-----dr~aa~~llar~~l~~~~----L~k~it~lSGGE~QriAliR~Lq~~P~ILLLD 158 (223)
T COG4619 89 FGD-TVEDNLIFPWQIRNRRP-----DRAAALDLLARFALPDSI----LTKNITELSGGEKQRIALIRNLQFMPKILLLD 158 (223)
T ss_pred ccc-chhhccccchHHhccCC-----ChHHHHHHHHHcCCchhh----hcchhhhccchHHHHHHHHHHhhcCCceEEec
Confidence 997 99999999887764322 234677899999997632 23567799999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCchHHHhhcCeEEEEecCCeE
Q 046786 203 EPTSGLDSTMAKKILVSLSKLA-EGGRTILMTIHQPASSLFYMFNKILLLSSDGSS 257 (604)
Q Consensus 203 EPtsgLD~~~~~~i~~~l~~la-~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~ 257 (604)
||||.||+.++..|-++|.++. ++.+.++.+||++. +..+.+|+++-+ ..|++
T Consensus 159 E~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~d-qa~rha~k~itl-~~G~~ 212 (223)
T COG4619 159 EITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKD-QAIRHADKVITL-QPGHA 212 (223)
T ss_pred CchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChH-HHhhhhheEEEe-ccCcc
Confidence 9999999999999999999987 57899999999986 556889999999 67754
No 290
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.2e-38 Score=286.25 Aligned_cols=205 Identities=29% Similarity=0.506 Sum_probs=182.5
Q ss_pred ccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCC-------h---hccccEEE
Q 046786 46 DEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS-------A---EVKRRTGF 115 (604)
Q Consensus 46 ~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~-------~---~~~~~i~y 115 (604)
++..++|.||+++.++||.+.++||||||||||++.|.-+.. |.+|+..+.|...+ + .+|+.+|+
T Consensus 12 yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~-----p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgm 86 (242)
T COG4161 12 YGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM-----PRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGM 86 (242)
T ss_pred cccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC-----CCCCeEEecccccccccCccHHHHHHHHHhhhh
Confidence 466789999999999999999999999999999999987653 67999999886542 1 46789999
Q ss_pred EecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhC
Q 046786 116 VAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLIN 195 (604)
Q Consensus 116 v~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~ 195 (604)
|+|.-.+.|++||.||+--+. ++. .++++++...++.++|+.+.|.+.+| +.+-.|||||+|||+|||||+.+
T Consensus 87 vfqqy~lwphltv~enlieap-~kv-~gl~~~qa~~~a~ellkrlrl~~~ad-----r~plhlsggqqqrvaiaralmmk 159 (242)
T COG4161 87 VFQQYNLWPHLTVQENLIEAP-CRV-LGLSKDQALARAEKLLKRLRLKPYAD-----RYPLHLSGGQQQRVAIARALMME 159 (242)
T ss_pred hhhhhccCchhHHHHHHHhhh-HHH-hCCCHHHHHHHHHHHHHHhccccccc-----cCceecccchhhhHHHHHHHhcC
Confidence 999999999999999997643 221 25678888889999999999999988 66779999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChh
Q 046786 196 PSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGE 264 (604)
Q Consensus 196 p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~ 264 (604)
|++|++||||+.|||.-...++++||+++..|.|-+++||.-. .....+.+++.| .+|+++..|+.+
T Consensus 160 pqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~-va~k~as~vvym-e~g~ive~g~a~ 226 (242)
T COG4161 160 PQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVE-VARKTASRVVYM-ENGHIVEQGDAS 226 (242)
T ss_pred CcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehh-HHHhhhhheEee-ecCeeEeecchh
Confidence 9999999999999999999999999999999999999999964 567788999999 899999999864
No 291
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=4.7e-38 Score=355.40 Aligned_cols=214 Identities=26% Similarity=0.438 Sum_probs=178.4
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~ 108 (604)
++..|+++.+.. .++.+|+|+|+++++||.++|+|+||||||||+|+|+|+.+ |++|+|.+||.+++. .
T Consensus 331 i~~~~v~f~y~~--~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~-----~~~G~I~i~g~~i~~~~~~~ 403 (571)
T TIGR02203 331 VEFRNVTFRYPG--RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE-----PDSGQILLDGHDLADYTLAS 403 (571)
T ss_pred EEEEEEEEEcCC--CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccC-----CCCCeEEECCEeHHhcCHHH
Confidence 455555554422 23569999999999999999999999999999999999986 579999999998753 5
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCCCcCHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLA-------RCRNSIIGGRLVRGLSGG 181 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgG 181 (604)
+++.++||||++.+|+. |++||+.++. ++..++ +++++.++.+|+. +-.||.+|+. .+.||||
T Consensus 404 ~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~~~~~~----~~i~~~l~~~~l~~~i~~lp~gldt~i~~~-g~~LSgG 473 (571)
T TIGR02203 404 LRRQVALVSQDVVLFND-TIANNIAYGR----TEQADR----AEIERALAAAYAQDFVDKLPLGLDTPIGEN-GVLLSGG 473 (571)
T ss_pred HHhhceEEccCcccccc-cHHHHHhcCC----CCCCCH----HHHHHHHHHcChHHHHHhCcCcccceecCC-CCcCCHH
Confidence 67889999999999876 9999998652 112233 2455666666653 3467888854 6689999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 182 ERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 182 erqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
||||++|||+++++|++++||||||+||+.++..+++.|++++ +++|+|++||+++ ....+|+++++ ++|+++..|
T Consensus 474 qrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~--~~~~~D~ii~l-~~g~i~~~g 549 (571)
T TIGR02203 474 QRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLS--TIEKADRIVVM-DDGRIVERG 549 (571)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhH--HHHhCCEEEEE-eCCEEEeeC
Confidence 9999999999999999999999999999999999999999986 4799999999984 56889999999 899999999
Q ss_pred ChhhHH
Q 046786 262 KGEDVI 267 (604)
Q Consensus 262 ~~~~~~ 267 (604)
+.+++.
T Consensus 550 ~~~~l~ 555 (571)
T TIGR02203 550 THNELL 555 (571)
T ss_pred CHHHHH
Confidence 988774
No 292
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.3e-37 Score=306.97 Aligned_cols=197 Identities=24% Similarity=0.351 Sum_probs=159.9
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~ 108 (604)
++..|+.+.+.. ..+.+|+|+|+++++||+++|+||||||||||||+|+|+.+ |++|+|.++|+++.. .
T Consensus 7 l~~~~l~~~~~~--~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~~~~ 79 (207)
T cd03369 7 IEVENLSVRYAP--DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE-----AEEGKIEIDGIDISTIPLED 79 (207)
T ss_pred EEEEEEEEEeCC--CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCCeEEECCEEhHHCCHHH
Confidence 344455544321 12469999999999999999999999999999999999985 579999999998742 3
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISI 188 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsi 188 (604)
.++.++|++|++.+++ .|++||+.+.. .... +.+.+.++ + + +.+..|||||+||++|
T Consensus 80 ~~~~i~~v~q~~~~~~-~tv~~~l~~~~------~~~~----~~~~~~l~---~----~-----~~~~~LS~G~~qrv~l 136 (207)
T cd03369 80 LRSSLTIIPQDPTLFS-GTIRSNLDPFD------EYSD----EEIYGALR---V----S-----EGGLNLSQGQRQLLCL 136 (207)
T ss_pred HHhhEEEEecCCcccC-ccHHHHhcccC------CCCH----HHHHHHhh---c----c-----CCCCcCCHHHHHHHHH
Confidence 4678999999998887 49999996521 1121 12333333 2 2 4567999999999999
Q ss_pred HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecCh
Q 046786 189 GQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKG 263 (604)
Q Consensus 189 a~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~ 263 (604)
||+|+.+|++++|||||+|||+.+...+.+.|+++. +|+|+|+++|++.. +.. +|++++| ++|+++..|++
T Consensus 137 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~-~~~-~d~v~~l-~~g~i~~~g~~ 207 (207)
T cd03369 137 ARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLRT-IID-YDKILVM-DAGEVKEYDHP 207 (207)
T ss_pred HHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-Hhh-CCEEEEE-ECCEEEecCCC
Confidence 999999999999999999999999999999999986 48999999999863 444 8999999 89999988764
No 293
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=7.7e-38 Score=361.02 Aligned_cols=214 Identities=27% Similarity=0.481 Sum_probs=176.3
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~ 108 (604)
++..|+++.+.. +++.+|+|+|+++++||.+||+||||||||||+|+|+|+++ |++|+|.+||.+++. .
T Consensus 456 i~~~~vsf~y~~--~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~-----p~~G~I~idg~~i~~~~~~~ 528 (694)
T TIGR01846 456 ITFENIRFRYAP--DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT-----PQHGQVLVDGVDLAIADPAW 528 (694)
T ss_pred EEEEEEEEEcCC--CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEehhhCCHHH
Confidence 444555554422 23569999999999999999999999999999999999985 579999999999853 5
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCCCcCHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGL-------ARCRNSIIGGRLVRGLSGG 181 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgG 181 (604)
+|+.++||+|++.+++. |++||+.++. | ..+++ .+.+.++..++ .+-.||.+|+ ....||||
T Consensus 529 ~r~~i~~v~q~~~lf~~-ti~eNi~~~~----~-~~~~~----~i~~a~~~~~l~~~i~~lp~gl~t~i~~-~g~~LSgG 597 (694)
T TIGR01846 529 LRRQMGVVLQENVLFSR-SIRDNIALCN----P-GAPFE----HVIHAAKLAGAHDFISELPQGYNTEVGE-KGANLSGG 597 (694)
T ss_pred HHHhCeEEccCCeehhh-hHHHHHhcCC----C-CCCHH----HHHHHHHHcChHHHHHhCcCccCcEecC-CCCCCCHH
Confidence 78899999999999875 9999997642 1 22332 23344444443 3346788874 46789999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 182 ERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 182 erqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
||||++|||+|+++|++++||||||+||+.++..+.+.|+++. +|+|+|+++|+++ . ...+|++++| ++|+++..|
T Consensus 598 q~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~-~-~~~~d~ii~l-~~G~i~~~g 673 (694)
T TIGR01846 598 QRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS-T-VRACDRIIVL-EKGQIAESG 673 (694)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH-H-HHhCCEEEEE-eCCEEEEeC
Confidence 9999999999999999999999999999999999999999985 5899999999985 3 4669999999 899999999
Q ss_pred ChhhHHH
Q 046786 262 KGEDVIN 268 (604)
Q Consensus 262 ~~~~~~~ 268 (604)
+.+++.+
T Consensus 674 ~~~~l~~ 680 (694)
T TIGR01846 674 RHEELLA 680 (694)
T ss_pred CHHHHHH
Confidence 9887753
No 294
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=6.5e-38 Score=302.70 Aligned_cols=164 Identities=37% Similarity=0.649 Sum_probs=144.7
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----hccccEEEEecCCCCCC
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----EVKRRTGFVAQNNVFYP 124 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~ 124 (604)
+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++.. .+++.++|++|
T Consensus 12 ~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~-----~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q------ 80 (180)
T cd03214 12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK-----PSSGEILLDGKDLASLSPKELARKIAYVPQ------ 80 (180)
T ss_pred eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCcCCHHHHHHHHhHHHH------
Confidence 569999999999999999999999999999999999985 579999999998742 34456888888
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 046786 125 HLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEP 204 (604)
Q Consensus 125 ~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEP 204 (604)
+++.+|+.+..+ +.++.||||||||++|||+|+.+|++++||||
T Consensus 81 -------------------------------~l~~~gl~~~~~-----~~~~~LS~G~~qrl~laral~~~p~llllDEP 124 (180)
T cd03214 81 -------------------------------ALELLGLAHLAD-----RPFNELSGGERQRVLLARALAQEPPILLLDEP 124 (180)
T ss_pred -------------------------------HHHHcCCHhHhc-----CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 566677765544 34569999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 205 TSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 205 tsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
|+|||+.++..+.+.|++++++ |+|+|+++|++. .+.+++|+++++ .+|++++.|
T Consensus 125 ~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l-~~g~i~~~~ 180 (180)
T cd03214 125 TSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILL-KDGRIVAQG 180 (180)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE-ECCEEEecC
Confidence 9999999999999999999876 899999999986 567899999999 899988654
No 295
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.5e-37 Score=351.76 Aligned_cols=214 Identities=28% Similarity=0.445 Sum_probs=175.8
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~ 108 (604)
++..|+++.+.. .+++.+|+|+|++++|||.++|+||||||||||+|+|+|+++ |++|+|.+||.++++ .
T Consensus 338 i~~~~v~f~y~~-~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~-----p~~G~I~i~g~~i~~~~~~~ 411 (576)
T TIGR02204 338 IEFEQVNFAYPA-RPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD-----PQSGRILLDGVDLRQLDPAE 411 (576)
T ss_pred EEEEEEEEECCC-CCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC-----CCCCEEEECCEEHHhcCHHH
Confidence 444455444322 122579999999999999999999999999999999999986 579999999998753 4
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCCCcCHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLA-------RCRNSIIGGRLVRGLSGG 181 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgG 181 (604)
+++.++|+||++.+|+. |++||+.++. | ..++ +++.+.++..|+. +-.||.+|+ ....||||
T Consensus 412 ~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~----~-~~~~----~~~~~~l~~~~l~~~i~~l~~gl~t~i~~-~g~~LSgG 480 (576)
T TIGR02204 412 LRARMALVPQDPVLFAA-SVMENIRYGR----P-DATD----EEVEAAARAAHAHEFISALPEGYDTYLGE-RGVTLSGG 480 (576)
T ss_pred HHHhceEEccCCccccc-cHHHHHhcCC----C-CCCH----HHHHHHHHHcCcHHHHHhCCCCCCceeCC-CCCcCCHH
Confidence 67889999999999875 9999997742 1 1222 2355566666553 335677774 46789999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 182 ERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 182 erqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
||||++|||+++++|++++||||||+||+.++..+++.|+++. +++|+|++||+++ ....+|+++.+ ++|+++..|
T Consensus 481 q~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~--~~~~~d~vi~l-~~g~~~~~g 556 (576)
T TIGR02204 481 QRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLA--TVLKADRIVVM-DQGRIVAQG 556 (576)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEE-ECCEEEeee
Confidence 9999999999999999999999999999999999999999986 4899999999984 45779999999 899999999
Q ss_pred ChhhHH
Q 046786 262 KGEDVI 267 (604)
Q Consensus 262 ~~~~~~ 267 (604)
+.++..
T Consensus 557 ~~~~l~ 562 (576)
T TIGR02204 557 THAELI 562 (576)
T ss_pred cHHHHH
Confidence 987763
No 296
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.9e-37 Score=349.98 Aligned_cols=200 Identities=27% Similarity=0.493 Sum_probs=170.2
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----hccccEEEEecCCCCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----EVKRRTGFVAQNNVFY 123 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~ 123 (604)
++.+|+|+|+++++||.++|+||||||||||+|+|+|.++ |++|+|.+||+++.. .+++.++||+|++.++
T Consensus 327 ~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~-----p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf 401 (569)
T PRK10789 327 DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD-----VSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLF 401 (569)
T ss_pred CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCCEEEECCEEHhhCCHHHHHhheEEEccCCeec
Confidence 3569999999999999999999999999999999999985 679999999998753 5678899999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCCCcCHHHHHHHHHHHHHhhCC
Q 046786 124 PHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGL-------ARCRNSIIGGRLVRGLSGGERKRISIGQELLINP 196 (604)
Q Consensus 124 ~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p 196 (604)
+. |++||+.++. + ..+++ .+++.++..++ .+..||.+|+ ....||||||||++|||+|+++|
T Consensus 402 ~~-ti~~Ni~~~~----~-~~~~~----~~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LSgGq~qRi~lARall~~~ 470 (569)
T PRK10789 402 SD-TVANNIALGR----P-DATQQ----EIEHVARLASVHDDILRLPQGYDTEVGE-RGVMLSGGQKQRISIARALLLNA 470 (569)
T ss_pred cc-cHHHHHhcCC----C-CCCHH----HHHHHHHHcCCHHHHHhCcCcccceecC-CCCcCCHHHHHHHHHHHHHhcCC
Confidence 75 9999997642 1 22332 23344444443 4456788874 46789999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 197 SLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 197 ~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
++++|||||++||+.+...+.+.|+++. +|+|+|+++|+++ ....+|++++| ++|+++..|+.+++.
T Consensus 471 ~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~--~~~~~d~i~~l-~~G~i~~~g~~~~l~ 537 (569)
T PRK10789 471 EILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLS--ALTEASEILVM-QHGHIAQRGNHDQLA 537 (569)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchh--HHHcCCEEEEE-eCCEEEEecCHHHHH
Confidence 9999999999999999999999999986 5899999999985 34679999999 899999999988765
No 297
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=7.6e-37 Score=349.09 Aligned_cols=220 Identities=27% Similarity=0.481 Sum_probs=187.7
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+...+....+.+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ |++|+|.+||+++..
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~i~~~~~~ 78 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK-----PTSGTYRVAGQDVATLDAD 78 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEcCcCCHH
Confidence 45666766655332223569999999999999999999999999999999999985 579999999998752
Q ss_pred h----ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHH
Q 046786 108 E----VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGER 183 (604)
Q Consensus 108 ~----~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 183 (604)
+ .++.++|++|+..+++.+|+.||+.+..... ....++.++++.++++.+||.+..|+ .++.|||||+
T Consensus 79 ~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~-----~~~~LS~Gq~ 150 (648)
T PRK10535 79 ALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEY-----QPSQLSGGQQ 150 (648)
T ss_pred HHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcC-----CcccCCHHHH
Confidence 1 1467999999999999999999999865432 22345556678999999999877664 4569999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecCh
Q 046786 184 KRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKG 263 (604)
Q Consensus 184 qRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~ 263 (604)
||+.|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++. .+ +.+|++++| ++|++++.|++
T Consensus 151 qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~-~~-~~~d~i~~l-~~G~i~~~g~~ 227 (648)
T PRK10535 151 QRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ-VA-AQAERVIEI-RDGEIVRNPPA 227 (648)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HH-HhCCEEEEE-ECCEEEeecCc
Confidence 9999999999999999999999999999999999999999878999999999975 34 579999999 89999999999
Q ss_pred hhHH
Q 046786 264 EDVI 267 (604)
Q Consensus 264 ~~~~ 267 (604)
++..
T Consensus 228 ~~~~ 231 (648)
T PRK10535 228 QEKV 231 (648)
T ss_pred cccc
Confidence 8775
No 298
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=6.5e-37 Score=299.43 Aligned_cols=182 Identities=23% Similarity=0.308 Sum_probs=152.4
Q ss_pred eeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccE
Q 046786 34 KKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRT 113 (604)
Q Consensus 34 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i 113 (604)
+..|+.+.+ +++.+++ +|+++++||+++|+||||||||||+++|+|+.+ |++|+|.++|.++....++.+
T Consensus 3 ~~~~l~~~~----~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~i~~~~~~~~ 72 (195)
T PRK13541 3 SLHQLQFNI----EQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ-----PSSGNIYYKNCNINNIAKPYC 72 (195)
T ss_pred EEEEeeEEE----CCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCcccChhhhhhE
Confidence 344554443 2344555 999999999999999999999999999999985 579999999998754334569
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHh
Q 046786 114 GFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELL 193 (604)
Q Consensus 114 ~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~ 193 (604)
+|++|+..+++.+||+||+.+..... . ..+++.++++.+++.+..+ +.++.||||||||++||++|+
T Consensus 73 ~~~~~~~~~~~~~tv~~~l~~~~~~~---~-----~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~~rl~la~al~ 139 (195)
T PRK13541 73 TYIGHNLGLKLEMTVFENLKFWSEIY---N-----SAETLYAAIHYFKLHDLLD-----EKCYSLSSGMQKIVAIARLIA 139 (195)
T ss_pred EeccCCcCCCccCCHHHHHHHHHHhc---c-----cHHHHHHHHHHcCCHhhhc-----cChhhCCHHHHHHHHHHHHHh
Confidence 99999988888899999998865322 1 1235778899999987666 446699999999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 046786 194 INPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPA 238 (604)
Q Consensus 194 ~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~ 238 (604)
.+|++++|||||+|||+.++..+.+.|++.+++|+|||+++|++.
T Consensus 140 ~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 184 (195)
T PRK13541 140 CQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLES 184 (195)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc
Confidence 999999999999999999999999999987777999999999986
No 299
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.8e-37 Score=303.06 Aligned_cols=179 Identities=30% Similarity=0.479 Sum_probs=145.2
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCH
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTV 128 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv 128 (604)
+.+|+|+|+++++||+++|+|||||||||||++|+|+.+ |++|+|.++| .++|++|++.+++ .|+
T Consensus 18 ~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~-----~~~G~i~~~g---------~i~~~~q~~~l~~-~t~ 82 (204)
T cd03250 18 SFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE-----KLSGSVSVPG---------SIAYVSQEPWIQN-GTI 82 (204)
T ss_pred cceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC-----CCCCeEEEcC---------EEEEEecCchhcc-CcH
Confidence 369999999999999999999999999999999999875 5799999998 5999999998885 699
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEE
Q 046786 129 AETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARC-------RNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFL 201 (604)
Q Consensus 129 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illL 201 (604)
+||+.+... ...+ ...+.++.+++.+. .++... +..+.||||||||++||++|+.+|++++|
T Consensus 83 ~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~lS~G~~qrv~laral~~~p~llll 151 (204)
T cd03250 83 RENILFGKP------FDEE----RYEKVIKACALEPDLEILPDGDLTEIG-EKGINLSGGQKQRISLARAVYSDADIYLL 151 (204)
T ss_pred HHHhccCCC------cCHH----HHHHHHHHcCcHHHHHhccCcccceec-CCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999987421 1111 12233333333221 122222 45779999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCe
Q 046786 202 DEPTSGLDSTMAKKILV-SLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGS 256 (604)
Q Consensus 202 DEPtsgLD~~~~~~i~~-~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~ 256 (604)
||||+|||+.++..+.+ ++++++++|+|||+++|++. .+.. +|++++| ++|+
T Consensus 152 DEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~-~~~~-~d~i~~l-~~G~ 204 (204)
T cd03250 152 DDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ-LLPH-ADQIVVL-DNGR 204 (204)
T ss_pred eCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH-HHhh-CCEEEEE-eCCC
Confidence 99999999999999998 56777667899999999986 4555 9999999 7774
No 300
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=6.9e-37 Score=304.31 Aligned_cols=188 Identities=28% Similarity=0.469 Sum_probs=152.4
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--------hccccEEEEecCC
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--------EVKRRTGFVAQNN 120 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--------~~~~~i~yv~Q~~ 120 (604)
+.+++|+|+++++||+++|+|||||||||||++|+|+.+ |++|+|.++|+++.. ..++.++|++|++
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~ 88 (218)
T cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ-----TLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKP 88 (218)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCCeEEECCcccccccccccchhhcceEEEEcCCC
Confidence 569999999999999999999999999999999999985 579999999987632 2346799999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCccCCCcCHHHHHHHHHHHHHh
Q 046786 121 VFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRN-------SIIGGRLVRGLSGGERKRISIGQELL 193 (604)
Q Consensus 121 ~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~vg~~~~~~LSgGerqRvsia~~L~ 193 (604)
.++ ..|++||+.+... ... +...++++.+++.+..+ +..+ ..+..||||||||++||++|+
T Consensus 89 ~~~-~~t~~~nl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LS~G~~qrv~laral~ 156 (218)
T cd03290 89 WLL-NATVEENITFGSP------FNK----QRYKAVTDACSLQPDIDLLPFGDQTEIG-ERGINLSGGQRQRICVARALY 156 (218)
T ss_pred ccc-cccHHHHHhhcCc------CCH----HHHHHHHHHhCcHHHHHhCcCccccCcc-cCCCcCCHHHHHHHHHHHHHh
Confidence 887 5799999977421 111 12334556666543221 2222 457799999999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHH--HHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCe
Q 046786 194 INPSLLFLDEPTSGLDSTMAKKILV--SLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGS 256 (604)
Q Consensus 194 ~~p~illLDEPtsgLD~~~~~~i~~--~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~ 256 (604)
.+|++++|||||+|||+.+...+++ .++.+.+.|.|+|+++|++.. + ..+|++++| ++|+
T Consensus 157 ~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~-~-~~~d~i~~l-~~G~ 218 (218)
T cd03290 157 QNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQY-L-PHADWIIAM-KDGS 218 (218)
T ss_pred hCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHH-H-hhCCEEEEe-cCCC
Confidence 9999999999999999999999998 677776678999999999863 4 569999999 7773
No 301
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=7.9e-37 Score=302.98 Aligned_cols=195 Identities=19% Similarity=0.231 Sum_probs=160.9
Q ss_pred ceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEE-ECCEeCChhccccEEEEecCCCCCCCCCH
Q 046786 50 MILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHIT-YNGKQFSAEVKRRTGFVAQNNVFYPHLTV 128 (604)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~-~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv 128 (604)
++|+|||+++++||+++|+||||||||||+|+|+|+.+ |++|+|. ++|.... +.|++.+++.+|+
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----~~sG~i~~~~~~~~~---------~~~~~~l~~~ltv 66 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA-----PDEGDFIGLRGDALP---------LGANSFILPGLTG 66 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc-----CCCCCEEEecCceec---------cccccccCCcCcH
Confidence 37999999999999999999999999999999999985 5799997 7775431 2345678899999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 046786 129 AETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGL 208 (604)
Q Consensus 129 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgL 208 (604)
+||+.+..... ....++. .+.+.+.++|....|+ .+++||||||||++||++|+.+|++++|||||+++
T Consensus 67 ~enl~~~~~~~---~~~~~~~---~~~~~~~~~l~~~~~~-----~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~l 135 (213)
T PRK15177 67 EENARMMASLY---GLDGDEF---SHFCYQLTQLEQCYTD-----RVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTG 135 (213)
T ss_pred HHHHHHHHHHc---CCCHHHH---HHHHHHHhChhHHhhc-----hHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccC
Confidence 99999876543 1222222 2334456778766664 45599999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHHHHHHh
Q 046786 209 DSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVINYFAG 272 (604)
Q Consensus 209 D~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~~~f~~ 272 (604)
|+.++..+.+.|.+..+ ++|+|+++|++. .+..++|++++| ++|++++.|+.++..++++.
T Consensus 136 D~~~~~~~~~~l~~~~~-~~~ii~vsH~~~-~~~~~~d~i~~l-~~G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 136 DNATQLRMQAALACQLQ-QKGLIVLTHNPR-LIKEHCHAFGVL-LHGKITMCEDLAQATALFEQ 196 (213)
T ss_pred CHHHHHHHHHHHHHHhh-CCcEEEEECCHH-HHHHhcCeeEEE-ECCeEEEeCCHHHHHHHHHH
Confidence 99999999998866543 468999999986 577889999999 89999999999999877664
No 302
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=1.4e-37 Score=327.55 Aligned_cols=211 Identities=33% Similarity=0.529 Sum_probs=182.9
Q ss_pred cccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----hccccEEEEecCC
Q 046786 45 SDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----EVKRRTGFVAQNN 120 (604)
Q Consensus 45 ~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~ 120 (604)
...++.+|+|+||.+++||.+||+||||||||||.|+|.|..+ |++|.|.+||.+++. .+-+.|||+||+-
T Consensus 345 Pg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~-----p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdV 419 (580)
T COG4618 345 PGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP-----PTSGSVRLDGADLRQWDREQLGRHIGYLPQDV 419 (580)
T ss_pred CCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccc-----cCCCcEEecchhhhcCCHHHhccccCcCcccc
Confidence 4456789999999999999999999999999999999999886 679999999988752 5778999999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCCHHH-----HHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhC
Q 046786 121 VFYPHLTVAETLVFTALLRLPNSLKREE-----KVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLIN 195 (604)
Q Consensus 121 ~l~~~lTv~e~l~f~~~~~~~~~~~~~~-----~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~ 195 (604)
.||+. ||.||+. |..++.+.+. +...+.+++ +.|.+-.||.|| +....||||||||+++||||-.+
T Consensus 420 eLF~G-TIaeNIa-----Rf~~~~d~~kIieAA~lAgvHelI--l~lP~GYdT~iG-~~G~~LSgGQRQRIaLARAlYG~ 490 (580)
T COG4618 420 ELFDG-TIAENIA-----RFGEEADPEKVIEAARLAGVHELI--LRLPQGYDTRIG-EGGATLSGGQRQRIALARALYGD 490 (580)
T ss_pred eecCC-cHHHHHH-----hccccCCHHHHHHHHHHcChHHHH--HhCcCCccCccC-CCCCCCCchHHHHHHHHHHHcCC
Confidence 99997 9999994 2222323221 112234443 467888999999 45679999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHHHHHHh
Q 046786 196 PSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVINYFAG 272 (604)
Q Consensus 196 p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~~~f~~ 272 (604)
|.+++||||-|+||......+.+.|.+++++|.|+|+++|.|+ +....|++++| ++|++-.+|+.++++.....
T Consensus 491 P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dkilvl-~~G~~~~FG~r~eVLa~~~~ 564 (580)
T COG4618 491 PFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKILVL-QDGRIAAFGPREEVLAKVLR 564 (580)
T ss_pred CcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcceeeee-cCChHHhcCCHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999996 67889999999 99999999999999987664
No 303
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=5.3e-37 Score=323.86 Aligned_cols=205 Identities=27% Similarity=0.394 Sum_probs=184.1
Q ss_pred ccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCC-----hhccccEEEEecCC
Q 046786 46 DEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS-----AEVKRRTGFVAQNN 120 (604)
Q Consensus 46 ~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~-----~~~~~~i~yv~Q~~ 120 (604)
++...+++|||+++++||+.||+|+||||||||+++|.|.++ |++|+|.++|+++. +..+..||+|.|+.
T Consensus 14 f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~-----P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF 88 (501)
T COG3845 14 FPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ-----PDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHF 88 (501)
T ss_pred cCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc-----CCcceEEECCEEeccCCHHHHHHcCCcEEeecc
Confidence 456789999999999999999999999999999999999986 78999999999974 24567899999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEE
Q 046786 121 VFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLF 200 (604)
Q Consensus 121 ~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~ill 200 (604)
.|+|++||.||+..+...........+..+++++++.+..||.-..|.+|+ +||-||||||.|-++|..+|++|+
T Consensus 89 ~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~-----dLsVG~qQRVEIlKaLyr~a~iLI 163 (501)
T COG3845 89 MLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA-----DLSVGEQQRVEILKALYRGARLLI 163 (501)
T ss_pred ccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceee-----cCCcchhHHHHHHHHHhcCCCEEE
Confidence 999999999999988653322234667777889999999999877775554 999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecC
Q 046786 201 LDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGK 262 (604)
Q Consensus 201 LDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~ 262 (604)
|||||+-|-|....++++.|++++++|+|||++||... ++.+.+|++.+| ++|+++-.-+
T Consensus 164 LDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTVL-R~Gkvvgt~~ 223 (501)
T COG3845 164 LDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVL-RRGKVVGTVD 223 (501)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEEE-eCCeEEeeec
Confidence 99999999999999999999999999999999999975 789999999999 9999886665
No 304
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.5e-37 Score=293.29 Aligned_cols=152 Identities=38% Similarity=0.641 Sum_probs=138.1
Q ss_pred ceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----hccccEEEEecCCCCCCC
Q 046786 50 MILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----EVKRRTGFVAQNNVFYPH 125 (604)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~~ 125 (604)
.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++.. ..++.++|++|++.+++
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~-----~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~- 89 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD-----PTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS- 89 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-
Confidence 69999999999999999999999999999999999985 569999999998742 34667999999998776
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 046786 126 LTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPT 205 (604)
Q Consensus 126 lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPt 205 (604)
.|+.||+ ||||||||++||++|+.+|++++|||||
T Consensus 90 ~t~~e~l---------------------------------------------LS~G~~~rl~la~al~~~p~llllDEP~ 124 (171)
T cd03228 90 GTIRENI---------------------------------------------LSGGQRQRIAIARALLRDPPILILDEAT 124 (171)
T ss_pred chHHHHh---------------------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 5898886 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCe
Q 046786 206 SGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGS 256 (604)
Q Consensus 206 sgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~ 256 (604)
+|||+.++..+.+.|+++++ ++|||+++|++. .+.. +|++++| ++|+
T Consensus 125 ~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~~~~l-~~g~ 171 (171)
T cd03228 125 SALDPETEALILEALRALAK-GKTVIVIAHRLS-TIRD-ADRIIVL-DDGR 171 (171)
T ss_pred cCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHHh-CCEEEEE-cCCC
Confidence 99999999999999999964 799999999986 4555 9999999 7774
No 305
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=4.1e-37 Score=348.15 Aligned_cols=213 Identities=24% Similarity=0.367 Sum_probs=172.5
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~ 108 (604)
++..|+++.+. +++.+|+|+|+++++||.++|+||||||||||+++|+|..+ |++|+|.+||.++.+ .
T Consensus 335 i~~~~v~~~y~---~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~~~~~~~~~ 406 (585)
T TIGR01192 335 VEFRHITFEFA---NSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD-----PTVGQILIDGIDINTVTRES 406 (585)
T ss_pred EEEEEEEEECC---CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC-----CCCCEEEECCEEhhhCCHHH
Confidence 44445544432 22468999999999999999999999999999999999985 679999999998743 5
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccCCCcCHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLG-------LARCRNSIIGGRLVRGLSGG 181 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgG 181 (604)
+++.++||+|++.+++ .|++||+.++. + ..++++. .+.++..+ +.+..||.+| +....||||
T Consensus 407 ~~~~i~~v~q~~~lf~-~ti~~Ni~~~~----~-~~~~~~~----~~a~~~~~~~~~i~~l~~g~~t~~~-~~~~~LSgG 475 (585)
T TIGR01192 407 LRKSIATVFQDAGLFN-RSIRENIRLGR----E-GATDEEV----YEAAKAAAAHDFILKRSNGYDTLVG-ERGNRLSGG 475 (585)
T ss_pred HHhheEEEccCCccCc-ccHHHHHhcCC----C-CCCHHHH----HHHHHHhCcHHHHHhccccccchhc-CCCCCCCHH
Confidence 6788999999999886 59999998752 1 2233322 22233322 3334567777 457789999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 182 ERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 182 erqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++. +|+|||+++|+++ .+ ..+|++++| ++|+++..|
T Consensus 476 q~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~-~~-~~~d~i~~l-~~G~i~~~g 551 (585)
T TIGR01192 476 ERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLS-TV-RNADLVLFL-DQGRLIEKG 551 (585)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChH-HH-HcCCEEEEE-ECCEEEEEC
Confidence 9999999999999999999999999999999999999999885 4899999999985 34 679999999 899999999
Q ss_pred ChhhHHH
Q 046786 262 KGEDVIN 268 (604)
Q Consensus 262 ~~~~~~~ 268 (604)
+.+++.+
T Consensus 552 ~~~~l~~ 558 (585)
T TIGR01192 552 SFQELIQ 558 (585)
T ss_pred CHHHHHH
Confidence 9876643
No 306
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=7.7e-37 Score=313.62 Aligned_cols=224 Identities=28% Similarity=0.462 Sum_probs=194.4
Q ss_pred hheeeeEEEEEecc-------ccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEe
Q 046786 32 MLKKVNMLVIIKNS-------DEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQ 104 (604)
Q Consensus 32 ~~~~~~~~~~~~~~-------~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~ 104 (604)
.++..++.+.+..+ .....++++||+++++||.++|+|+||||||||=.+|.++++ .+|+|.++|++
T Consensus 276 ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~------s~G~I~F~G~~ 349 (534)
T COG4172 276 LLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP------SQGEIRFDGQD 349 (534)
T ss_pred eEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcC------cCceEEECCcc
Confidence 45555655544322 123569999999999999999999999999999999999986 36999999999
Q ss_pred CCh-------hccccEEEEecCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccC
Q 046786 105 FSA-------EVKRRTGFVAQNNV--FYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLV 175 (604)
Q Consensus 105 ~~~-------~~~~~i~yv~Q~~~--l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 175 (604)
++. .+|+.+-.||||+. |-|.+||.|-+.-+....-| ..++.++.+++.+.|+++||+... .++++
T Consensus 350 i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~----r~RYP 424 (534)
T COG4172 350 IDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPAT----RNRYP 424 (534)
T ss_pred ccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhH----hhcCC
Confidence 852 25678999999984 88999999999998776543 467889999999999999997532 24889
Q ss_pred CCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecC
Q 046786 176 RGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSD 254 (604)
Q Consensus 176 ~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~ 254 (604)
.+.|||||||++|||||+.+|++++||||||.||-+-+..|+++|++|.+ .|.+-++++||.. .+-.++|++++| ++
T Consensus 425 hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm-~~ 502 (534)
T COG4172 425 HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVM-RD 502 (534)
T ss_pred cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEE-eC
Confidence 99999999999999999999999999999999999999999999999976 5999999999975 789999999999 99
Q ss_pred CeEEEecChhhHHH
Q 046786 255 GSSLYFGKGEDVIN 268 (604)
Q Consensus 255 G~~v~~G~~~~~~~ 268 (604)
|++|..|+.+++.+
T Consensus 503 GkiVE~G~~~~if~ 516 (534)
T COG4172 503 GKIVEQGPTEAVFA 516 (534)
T ss_pred CEEeeeCCHHHHhc
Confidence 99999999988754
No 307
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.8e-36 Score=306.66 Aligned_cols=189 Identities=23% Similarity=0.311 Sum_probs=155.1
Q ss_pred eeeceEEEEe-----cCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCC
Q 046786 51 ILKGVSGAVS-----PGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPH 125 (604)
Q Consensus 51 iL~~vs~~i~-----~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~ 125 (604)
.++|++++++ +||+++|+|||||||||||++|+|..+ |++|+|.++|+ .++|++|+....+.
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~-----p~~G~i~~~g~--------~i~~~~q~~~~~~~ 75 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK-----PDEGDIEIELD--------TVSYKPQYIKADYE 75 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCCCeEEECCc--------eEEEecccccCCCC
Confidence 5666666665 799999999999999999999999985 57999999985 58999999887778
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 046786 126 LTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPT 205 (604)
Q Consensus 126 lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPt 205 (604)
+||+|++.+...... . ....++++++.+||.+..+ +.+..|||||||||+||++|+.+|++++|||||
T Consensus 76 ~tv~e~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~-----~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt 143 (246)
T cd03237 76 GTVRDLLSSITKDFY----T---HPYFKTEIAKPLQIEQILD-----REVPELSGGELQRVAIAACLSKDADIYLLDEPS 143 (246)
T ss_pred CCHHHHHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 999999976432110 1 1124678899999987666 445699999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecCCeEE--EecChhhH
Q 046786 206 SGLDSTMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSDGSSL--YFGKGEDV 266 (604)
Q Consensus 206 sgLD~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v--~~G~~~~~ 266 (604)
++||+.++..+.+.|+++++ .|+|||+++|++. .+..++|++++| +++..+ ..+++.++
T Consensus 144 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l-~~~~~~~~~~~~~~~~ 205 (246)
T cd03237 144 AYLDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVF-EGEPSVNGVANPPQSL 205 (246)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE-cCCCeeEEEeCCchHH
Confidence 99999999999999999986 4899999999975 677889999999 443322 34455443
No 308
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2.7e-37 Score=376.88 Aligned_cols=220 Identities=24% Similarity=0.379 Sum_probs=179.7
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC-----------------------
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNG----------------------- 89 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~----------------------- 89 (604)
++..|+++.+... +++++|+|+|++|++|+.+||+||||||||||+++|.|++.+.
T Consensus 1166 I~f~nVsF~Y~~~-~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~ 1244 (1466)
T PTZ00265 1166 IEIMDVNFRYISR-PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQG 1244 (1466)
T ss_pred EEEEEEEEECCCC-CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccc
Confidence 4555666654321 2357999999999999999999999999999999999998751
Q ss_pred --------------------------CCCccccEEEECCEeCCh----hccccEEEEecCCCCCCCCCHHHHHHHHHHhc
Q 046786 90 --------------------------KDTVTQGHITYNGKQFSA----EVKRRTGFVAQNNVFYPHLTVAETLVFTALLR 139 (604)
Q Consensus 90 --------------------------~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~ 139 (604)
...|++|+|++||.++.+ .+|+.+|||+|++.+|+ .|++|||.++.
T Consensus 1245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~--- 1320 (1466)
T PTZ00265 1245 DEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGK--- 1320 (1466)
T ss_pred ccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCC---
Confidence 001369999999999853 57889999999999996 59999999862
Q ss_pred CCCCCCHHHHHHHHHHHHHHc-------CCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHH
Q 046786 140 LPNSLKREEKVLHAEAVINQL-------GLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTM 212 (604)
Q Consensus 140 ~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~ 212 (604)
+ ..++++ +++.++.. .|.+-.||.|| +....||||||||++|||||+++|+||+||||||+||+.+
T Consensus 1321 -~-~at~ee----I~~A~k~A~l~~fI~~LP~GydT~VG-e~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~s 1393 (1466)
T PTZ00265 1321 -E-DATRED----VKRACKFAAIDEFIESLPNKYDTNVG-PYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNS 1393 (1466)
T ss_pred -C-CCCHHH----HHHHHHHcCCHHHHHhCccccCCccC-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence 1 233333 33344433 35567799999 5567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-hCCCEEEEEecCCchHHHhhcCeEEEEecC----CeEE-EecChhhHH
Q 046786 213 AKKILVSLSKLA-EGGRTILMTIHQPASSLFYMFNKILLLSSD----GSSL-YFGKGEDVI 267 (604)
Q Consensus 213 ~~~i~~~l~~la-~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~----G~~v-~~G~~~~~~ 267 (604)
...|.+.|+++. .+|+|+|+++|+++ ..+.+|+|++| ++ |+++ ..|+.++++
T Consensus 1394 E~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl-~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1394 EKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVF-NNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred HHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEE-eCCCCCCCEEEEecCHHHHH
Confidence 999999999997 36899999999985 45779999999 77 8955 899988875
No 309
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=2.8e-36 Score=286.68 Aligned_cols=146 Identities=32% Similarity=0.506 Sum_probs=133.9
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-----hccccEEEEecCCCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-----EVKRRTGFVAQNNVF 122 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-----~~~~~i~yv~Q~~~l 122 (604)
++++++|+|+++++||+++|+|||||||||||++|+|+.+ |++|+|.++|+++.. ..++.++|++|
T Consensus 12 ~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q---- 82 (163)
T cd03216 12 GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK-----PDSGEILVDGKEVSFASPRDARRAGIAMVYQ---- 82 (163)
T ss_pred CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEECCcCCHHHHHhcCeEEEEe----
Confidence 3469999999999999999999999999999999999985 579999999998742 23567999998
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEe
Q 046786 123 YPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLD 202 (604)
Q Consensus 123 ~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLD 202 (604)
||||||||++||++|+.+|++++||
T Consensus 83 -------------------------------------------------------LS~G~~qrl~laral~~~p~illlD 107 (163)
T cd03216 83 -------------------------------------------------------LSVGERQMVEIARALARNARLLILD 107 (163)
T ss_pred -------------------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 9999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEE
Q 046786 203 EPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLY 259 (604)
Q Consensus 203 EPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~ 259 (604)
|||+|||+.++..+.+.|++++++|.|||+++|++. .+.+.+|+++++ ++|++++
T Consensus 108 EP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l-~~g~i~~ 162 (163)
T cd03216 108 EPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVL-RDGRVVG 162 (163)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEE-ECCEEEe
Confidence 999999999999999999999877999999999975 577889999999 8999875
No 310
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=3.6e-37 Score=345.16 Aligned_cols=185 Identities=35% Similarity=0.547 Sum_probs=154.3
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh---hc
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---EV 109 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---~~ 109 (604)
++..|+++.+. +++.+|+|+|+++++||.+||+||||||||||+|+|+|.++ |++|+|.+||.++.+ .+
T Consensus 335 I~~~~vsf~Y~---~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-----p~~G~I~i~g~~i~~~~~~l 406 (529)
T TIGR02868 335 LELRDLSFGYP---GSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD-----PLQGEVTLDGVSVSSLQDEL 406 (529)
T ss_pred EEEEEEEEecC---CCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEhhhHHHHH
Confidence 45556555542 22459999999999999999999999999999999999986 679999999998863 56
Q ss_pred cccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCCCcCHHH
Q 046786 110 KRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGL-------ARCRNSIIGGRLVRGLSGGE 182 (604)
Q Consensus 110 ~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGe 182 (604)
|+.++||||++.+|+. |++||+.++. | ..+++ ++.+.++..++ ++-.||.+|+ ....|||||
T Consensus 407 r~~i~~V~Q~~~lF~~-TI~eNI~~g~----~-~~~~e----~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSGGQ 475 (529)
T TIGR02868 407 RRRISVFAQDAHLFDT-TVRDNLRLGR----P-DATDE----ELWAALERVGLADWLRSLPDGLDTVLGE-GGARLSGGE 475 (529)
T ss_pred HhheEEEccCcccccc-cHHHHHhccC----C-CCCHH----HHHHHHHHcCCHHHHHhCcccccchhcc-ccCcCCHHH
Confidence 7899999999999976 9999998752 1 22332 35556666554 3456899985 456899999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 046786 183 RKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQP 237 (604)
Q Consensus 183 rqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~ 237 (604)
|||++|||||+.+|++++||||||+||+.++..+.+.|+++. +++|+|+++|++
T Consensus 476 rQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 476 RQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 999999999999999999999999999999999999999875 479999999985
No 311
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=2.6e-36 Score=287.81 Aligned_cols=151 Identities=34% Similarity=0.554 Sum_probs=135.0
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCH
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTV 128 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv 128 (604)
+.+|+|+|+++++||+++|+||||||||||+++|+|.++ |++|+|.++|. +.++|++|++.++ ..|+
T Consensus 14 ~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~~~-------~~i~~~~q~~~~~-~~tv 80 (166)
T cd03223 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP-----WGSGRIGMPEG-------EDLLFLPQRPYLP-LGTL 80 (166)
T ss_pred CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCC-------ceEEEECCCCccc-cccH
Confidence 569999999999999999999999999999999999985 57999999873 5799999998765 5799
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 046786 129 AETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGL 208 (604)
Q Consensus 129 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgL 208 (604)
+||+.+. ..+.||||||||++|||+|+.+|++++|||||+||
T Consensus 81 ~~nl~~~--------------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~L 122 (166)
T cd03223 81 REQLIYP--------------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSAL 122 (166)
T ss_pred HHHhhcc--------------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCcccc
Confidence 9998652 13489999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCC
Q 046786 209 DSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDG 255 (604)
Q Consensus 209 D~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G 255 (604)
|+.++..+.+.|+++ ++|+|+++|++. ....+|++++|.++|
T Consensus 123 D~~~~~~l~~~l~~~---~~tiiivsh~~~--~~~~~d~i~~l~~~~ 164 (166)
T cd03223 123 DEESEDRLYQLLKEL---GITVISVGHRPS--LWKFHDRVLDLDGEG 164 (166)
T ss_pred CHHHHHHHHHHHHHh---CCEEEEEeCChh--HHhhCCEEEEEcCCC
Confidence 999999999999987 589999999975 346899999995555
No 312
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-36 Score=336.90 Aligned_cols=211 Identities=24% Similarity=0.420 Sum_probs=171.4
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhcccc
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRR 112 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 112 (604)
++..|+++.+ +++.+|+|+|+++++||+++|+||||||||||||+|+|+++ |++|+|.++|. +.
T Consensus 2 l~i~~ls~~~----~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~-------~~ 65 (530)
T PRK15064 2 LSTANITMQF----GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE-----PSAGNVSLDPN-------ER 65 (530)
T ss_pred EEEEEEEEEe----CCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEecCC-------CE
Confidence 4455665544 34569999999999999999999999999999999999985 57999999873 35
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHH-h-----------cCCCC-----------------CCHHHHHHHHHHHHHHcCCC
Q 046786 113 TGFVAQNNVFYPHLTVAETLVFTAL-L-----------RLPNS-----------------LKREEKVLHAEAVINQLGLA 163 (604)
Q Consensus 113 i~yv~Q~~~l~~~lTv~e~l~f~~~-~-----------~~~~~-----------------~~~~~~~~~v~~~l~~lgL~ 163 (604)
+||++|++.+++.+||+|++.++.. . ..+.. ....+.+++++++++.+||.
T Consensus 66 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 145 (530)
T PRK15064 66 LGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIP 145 (530)
T ss_pred EEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCC
Confidence 9999999989999999999987531 0 00000 00012235688999999997
Q ss_pred ccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh
Q 046786 164 RCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFY 243 (604)
Q Consensus 164 ~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~ 243 (604)
+..+ ++.+..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|.|||+++|++. .+..
T Consensus 146 ~~~~----~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~-~~~~ 217 (530)
T PRK15064 146 EEQH----YGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDRH-FLNS 217 (530)
T ss_pred hhHh----cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCHH-HHHh
Confidence 5332 134669999999999999999999999999999999999999999999864 5899999999975 6788
Q ss_pred hcCeEEEEecCCeE-EEecChhhHHH
Q 046786 244 MFNKILLLSSDGSS-LYFGKGEDVIN 268 (604)
Q Consensus 244 ~~d~v~ll~~~G~~-v~~G~~~~~~~ 268 (604)
.+|++++| ++|++ ++.|++++..+
T Consensus 218 ~~d~i~~l-~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 218 VCTHMADL-DYGELRVYPGNYDEYMT 242 (530)
T ss_pred hcceEEEE-eCCEEEEecCCHHHHHH
Confidence 99999999 89999 58898876653
No 313
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=4.3e-36 Score=309.43 Aligned_cols=189 Identities=31% Similarity=0.489 Sum_probs=153.9
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCH
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTV 128 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv 128 (604)
+.+|+|+|+++++||+++|+||||||||||+++|+|+++ |++|+|.++| .++|++|++.+++. ||
T Consensus 50 ~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~-----p~~G~I~i~g---------~i~yv~q~~~l~~~-tv 114 (282)
T cd03291 50 APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE-----PSEGKIKHSG---------RISFSSQFSWIMPG-TI 114 (282)
T ss_pred ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECC---------EEEEEeCccccccc-CH
Confidence 569999999999999999999999999999999999985 5799999998 39999999988875 99
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEE
Q 046786 129 AETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARC-------RNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFL 201 (604)
Q Consensus 129 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illL 201 (604)
+||+.+.... ... ++.+.++.+++.+. .++.++ +.++.||||||||++||++|+.+|++++|
T Consensus 115 ~enl~~~~~~------~~~----~~~~~l~~~~l~~~l~~~~~~~~~~~~-~~~~~LSgGq~qrv~lAraL~~~p~iLiL 183 (282)
T cd03291 115 KENIIFGVSY------DEY----RYKSVVKACQLEEDITKFPEKDNTVLG-EGGITLSGGQRARISLARAVYKDADLYLL 183 (282)
T ss_pred HHHhhccccc------CHH----HHHHHHHHhCCHHHHHhccccccceec-CCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999874211 111 12233343444321 223332 34679999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 202 DEPTSGLDSTMAKKILVSL-SKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 202 DEPtsgLD~~~~~~i~~~l-~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
||||+|||+.+...+.+.+ ++++ ++.|||+++|++.. + ..+|++++| ++|++++.|+++++.
T Consensus 184 DEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~-~-~~~d~i~~l-~~G~i~~~g~~~~~~ 246 (282)
T cd03291 184 DSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKILIL-HEGSSYFYGTFSELQ 246 (282)
T ss_pred ECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHH-H-HhCCEEEEE-ECCEEEEECCHHHHH
Confidence 9999999999999999865 5664 47999999999864 4 579999999 899999999988764
No 314
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-36 Score=336.22 Aligned_cols=204 Identities=24% Similarity=0.375 Sum_probs=168.4
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-----hccccEEEEecCC---
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-----EVKRRTGFVAQNN--- 120 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-----~~~~~i~yv~Q~~--- 120 (604)
+.+|+|+|+++++||+++|+||||||||||||+|+|..+ |++|+|.++|+++.. ..++.++|++|+.
T Consensus 261 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~ 335 (491)
T PRK10982 261 QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE-----KSAGTITLHGKKINNHNANEAINHGFALVTEERRST 335 (491)
T ss_pred CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc-----CCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhC
Confidence 459999999999999999999999999999999999985 579999999988742 2356699999985
Q ss_pred CCCCCCCHHHHHHHHH--HhcCCCC-CCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCcCHHHHHHHHHHHHHhhCC
Q 046786 121 VFYPHLTVAETLVFTA--LLRLPNS-LKREEKVLHAEAVINQLGLA-RCRNSIIGGRLVRGLSGGERKRISIGQELLINP 196 (604)
Q Consensus 121 ~l~~~lTv~e~l~f~~--~~~~~~~-~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p 196 (604)
.+++.+|+.+|..+.. ....... .......+.++++++.+++. +..+ +.+.+|||||||||+||++|+.+|
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~LSgGq~qrv~la~al~~~p 410 (491)
T PRK10982 336 GIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHR-----TQIGSLSGGNQQKVIIGRWLLTQP 410 (491)
T ss_pred CcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcc-----cccccCCcHHHHHHHHHHHHhcCC
Confidence 3688888887743221 0100001 12233445688899999995 3445 456699999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChh
Q 046786 197 SLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGE 264 (604)
Q Consensus 197 ~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~ 264 (604)
+||||||||+|||+.++..+++.|++++++|+|||++||++. .+..++|++++| ++|+++..++++
T Consensus 411 ~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l-~~g~i~~~~~~~ 476 (491)
T PRK10982 411 EILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVM-SNGLVAGIVDTK 476 (491)
T ss_pred CEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEE-ECCEEEEEEccc
Confidence 999999999999999999999999999888999999999975 678899999999 899999877553
No 315
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.3e-36 Score=298.96 Aligned_cols=209 Identities=29% Similarity=0.403 Sum_probs=182.0
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh---hccccEEEEec-CCCCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---EVKRRTGFVAQ-NNVFY 123 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---~~~~~i~yv~Q-~~~l~ 123 (604)
...+++||||+|++|++++.+|||||||||+||+|+|++. |++|.|.++|.++-+ ++-+.+++|+- .-.+.
T Consensus 36 ~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~-----p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~ 110 (325)
T COG4586 36 SIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL-----PTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLW 110 (325)
T ss_pred hhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc-----cCCCeEEecCcCcchhHHHHHHHHHHHhhhhheee
Confidence 3458999999999999999999999999999999999985 679999999998732 34566777754 44565
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeC
Q 046786 124 PHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDE 203 (604)
Q Consensus 124 ~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDE 203 (604)
..+-+.|++....... .++.++-+++.+.+.+.|+|+...+ .++|.||-|||.|+.||.+|+++|+||||||
T Consensus 111 Wdlp~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk-----~~vr~LSlGqRmraeLaaaLLh~p~VLfLDE 182 (325)
T COG4586 111 WDLPALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLK-----WPVRKLSLGQRMRAELAAALLHPPKVLFLDE 182 (325)
T ss_pred eechhhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhh-----hhhhhccchHHHHHHHHHHhcCCCcEEEecC
Confidence 6666888877655443 5677888889999999999998776 4577999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHHHHHH
Q 046786 204 PTSGLDSTMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVINYFA 271 (604)
Q Consensus 204 PtsgLD~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~~~f~ 271 (604)
||-|||..++..+.+.|++..+ .+.||+.+||+.+ .+..+||+++++ +.|+++|.|+.+++.+-|.
T Consensus 183 pTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I-~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 183 PTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLI-DQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred CccCcchhHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEe-eCCcEeecccHHHHHHHhC
Confidence 9999999999999999999986 5999999999986 789999999999 8999999999999987664
No 316
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.1e-37 Score=297.65 Aligned_cols=214 Identities=32% Similarity=0.488 Sum_probs=179.5
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCC-----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS-----A 107 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~-----~ 107 (604)
+...|+.+. +.+|+||+|+|.+|++||-.+|+|||||||||||++++|-.+ |++|.+.+.|+... .
T Consensus 32 i~l~~v~v~----r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~-----pssg~~~~~G~~~G~~~~~~ 102 (257)
T COG1119 32 IELKNVSVR----RNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP-----PSSGDVTLLGRRFGKGETIF 102 (257)
T ss_pred EEecceEEE----ECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccC-----CCCCceeeeeeeccCCcchH
Confidence 444554443 356889999999999999999999999999999999999886 46899999999873 3
Q ss_pred hccccEEEEecC--CCCCCCCCHHHHHHHHHHhc--CCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHH
Q 046786 108 EVKRRTGFVAQN--NVFYPHLTVAETLVFTALLR--LPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGER 183 (604)
Q Consensus 108 ~~~~~i~yv~Q~--~~l~~~lTv~e~l~f~~~~~--~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 183 (604)
+.|++||+|.-. ..+.+..+|+|-+.-+..-. .......++..+++..+++.+|+.+.+|.. ...||-|||
T Consensus 103 elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~-----~~~LS~Ge~ 177 (257)
T COG1119 103 ELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRP-----FGSLSQGEQ 177 (257)
T ss_pred HHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCc-----hhhcCHhHH
Confidence 678999999764 44566788998876443221 112123456667899999999999988844 559999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 184 KRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG--GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 184 qRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~--g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
|||-|||||+++|.+||||||++|||......+++.|.+++.. +.++|++||++. ++-..|++++++ ++|++++.|
T Consensus 178 rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~lll-~~g~v~~~g 255 (257)
T COG1119 178 RRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLL-KEGEVVAQG 255 (257)
T ss_pred HHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccceEEEe-eCCceeecc
Confidence 9999999999999999999999999999999999999999865 899999999975 788999999999 899999988
Q ss_pred C
Q 046786 262 K 262 (604)
Q Consensus 262 ~ 262 (604)
.
T Consensus 256 ~ 256 (257)
T COG1119 256 K 256 (257)
T ss_pred c
Confidence 4
No 317
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=9.7e-36 Score=335.02 Aligned_cols=210 Identities=25% Similarity=0.335 Sum_probs=171.1
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccc
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKR 111 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~ 111 (604)
+++..|+++.+. +++.+|+|+||+|++||+++|+||||||||||||+|+|.++ |++|+|.+++ ..
T Consensus 6 ~l~i~~l~~~y~---~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~-----p~~G~i~~~~-------~~ 70 (556)
T PRK11819 6 IYTMNRVSKVVP---PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK-----EFEGEARPAP-------GI 70 (556)
T ss_pred EEEEeeEEEEeC---CCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEecC-------CC
Confidence 466667665542 14679999999999999999999999999999999999985 5799999975 24
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHHH-hc------------CCCCCCH--------------------HHHHHHHHHHHH
Q 046786 112 RTGFVAQNNVFYPHLTVAETLVFTAL-LR------------LPNSLKR--------------------EEKVLHAEAVIN 158 (604)
Q Consensus 112 ~i~yv~Q~~~l~~~lTv~e~l~f~~~-~~------------~~~~~~~--------------------~~~~~~v~~~l~ 158 (604)
.+|||+|++.+++.+||.||+.++.. .+ ....... .+..++++++++
T Consensus 71 ~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 150 (556)
T PRK11819 71 KVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMD 150 (556)
T ss_pred EEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 69999999999999999999987532 00 0000000 012356788999
Q ss_pred HcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 046786 159 QLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPA 238 (604)
Q Consensus 159 ~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~ 238 (604)
.+||.. .+ +.+.+|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++. .|||++||++.
T Consensus 151 ~~gl~~-~~-----~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~~ 221 (556)
T PRK11819 151 ALRCPP-WD-----AKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDRY 221 (556)
T ss_pred hCCCCc-cc-----CchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCHH
Confidence 999953 44 4566999999999999999999999999999999999999999999999873 49999999975
Q ss_pred hHHHhhcCeEEEEecCCeEE-EecChhhHH
Q 046786 239 SSLFYMFNKILLLSSDGSSL-YFGKGEDVI 267 (604)
Q Consensus 239 ~~i~~~~d~v~ll~~~G~~v-~~G~~~~~~ 267 (604)
.+...+|++++| ++|+++ +.|+.++..
T Consensus 222 -~~~~~~d~i~~l-~~g~i~~~~g~~~~~~ 249 (556)
T PRK11819 222 -FLDNVAGWILEL-DRGRGIPWEGNYSSWL 249 (556)
T ss_pred -HHHhhcCeEEEE-eCCEEEEecCCHHHHH
Confidence 677899999999 899986 888776543
No 318
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1.4e-36 Score=340.37 Aligned_cols=198 Identities=32% Similarity=0.515 Sum_probs=163.4
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~ 108 (604)
++..|+++.+.. .++.+|+|+|+++++||.++|+||||||||||+|+|+|+++ |++|+|.+||.++.+ .
T Consensus 321 i~~~~v~f~y~~--~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~I~~~g~~i~~~~~~~ 393 (529)
T TIGR02857 321 LEFSGLSVAYPG--RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD-----PTEGSIAVNGVPLADADADS 393 (529)
T ss_pred EEEEEEEEECCC--CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEehhhCCHHH
Confidence 445555554422 23469999999999999999999999999999999999986 679999999998753 5
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCCCcCHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLA-------RCRNSIIGGRLVRGLSGG 181 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgG 181 (604)
+++.++||+|++.+|+. |++||+.++. + ..++ +.+.+.++..++. +-.||.+|+ ....||||
T Consensus 394 lr~~i~~v~Q~~~lf~~-ti~~Ni~~~~----~-~~~~----~~i~~a~~~~~l~~~i~~lp~Gldt~v~e-~g~~LSgG 462 (529)
T TIGR02857 394 WRDQIAWVPQHPFLFAG-TIAENIRLAR----P-DASD----AEIRRALERAGLDEFVAALPQGLDTLIGE-GGAGLSGG 462 (529)
T ss_pred HHhheEEEcCCCcccCc-CHHHHHhccC----C-CCCH----HHHHHHHHHcCcHHHHHhCcccccchhcc-ccccCCHH
Confidence 78899999999999975 9999998752 1 1222 2355566666654 345888884 56789999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEE
Q 046786 182 ERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLL 251 (604)
Q Consensus 182 erqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll 251 (604)
||||++|||+|+++|++++||||||+||+.++..+.+.|+++. +|+|+|+++|+++ ....+|++++|
T Consensus 463 q~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~i~~l 529 (529)
T TIGR02857 463 QAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLA--LAERADRIVVL 529 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHH--HHHhCCEEEeC
Confidence 9999999999999999999999999999999999999999986 5899999999985 35779999875
No 319
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=5e-36 Score=332.83 Aligned_cols=214 Identities=23% Similarity=0.362 Sum_probs=167.9
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+.+.+ +++.+|+|+|+++++||+++|+||||||||||||+|+|..++ +++|+|.++|+++..
T Consensus 260 ~l~~~~l~~~~----~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~----~~~G~i~~~g~~~~~~~~~ 331 (490)
T PRK10938 260 RIVLNNGVVSY----NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ----GYSNDLTLFGRRRGSGETI 331 (490)
T ss_pred eEEEeceEEEE----CCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc----ccCCeEEEecccCCCCCCH
Confidence 34555554433 345699999999999999999999999999999999997641 258999999987531
Q ss_pred -hccccEEEEecCCCCCC--CCCHHHHHHHHHHh--cCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCcCHH
Q 046786 108 -EVKRRTGFVAQNNVFYP--HLTVAETLVFTALL--RLPNSLKREEKVLHAEAVINQLGLAR-CRNSIIGGRLVRGLSGG 181 (604)
Q Consensus 108 -~~~~~i~yv~Q~~~l~~--~lTv~e~l~f~~~~--~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgG 181 (604)
..++.+||++|++.+++ ..|+++++.+.... ....... .+.+++++++++.+||.+ ..+ +.+++||||
T Consensus 332 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~-----~~~~~LSgG 405 (490)
T PRK10938 332 WDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTAD-----APFHSLSWG 405 (490)
T ss_pred HHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhcc-----CchhhCCHH
Confidence 24567999999876543 35777776543211 1111112 223457889999999986 666 445699999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCCchHHHh-hcCeEEEEecCCeEEE
Q 046786 182 ERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGG-RTILMTIHQPASSLFY-MFNKILLLSSDGSSLY 259 (604)
Q Consensus 182 erqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g-~tvi~~~Hq~~~~i~~-~~d~v~ll~~~G~~v~ 259 (604)
|||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++| .|||++||++. .+.+ ++|++++| ++|++++
T Consensus 406 q~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l-~~G~i~~ 483 (490)
T PRK10938 406 QQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFV-PDGDIYR 483 (490)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEe-cCCceEE
Confidence 9999999999999999999999999999999999999999998776 47999999986 4555 58999999 8999887
Q ss_pred ec
Q 046786 260 FG 261 (604)
Q Consensus 260 ~G 261 (604)
.-
T Consensus 484 ~~ 485 (490)
T PRK10938 484 YV 485 (490)
T ss_pred ee
Confidence 54
No 320
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=5.5e-36 Score=368.12 Aligned_cols=213 Identities=21% Similarity=0.313 Sum_probs=178.6
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~ 108 (604)
++..|+++.+.. +.+.+|+|+|++|+|||.+||+||||||||||+++|.|+++ |++|+|.+||.++.+ .
T Consensus 1235 I~f~nVsf~Y~~--~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~IdG~di~~i~~~~ 1307 (1495)
T PLN03232 1235 IKFEDVHLRYRP--GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE-----LEKGRIMIDDCDVAKFGLTD 1307 (1495)
T ss_pred EEEEEEEEEECC--CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCCceEEECCEEhhhCCHHH
Confidence 555666665532 23569999999999999999999999999999999999985 679999999999853 5
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCCCcCHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLA-------RCRNSIIGGRLVRGLSGG 181 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgG 181 (604)
+|++++||||++.+|+. |++|||.+.. ..+++ .+.+.++..++. +-.||.+| +....||||
T Consensus 1308 lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~sde----ei~~al~~a~l~~~I~~lp~GLdt~v~-e~G~~LSgG 1375 (1495)
T PLN03232 1308 LRRVLSIIPQSPVLFSG-TVRFNIDPFS------EHNDA----DLWEALERAHIKDVIDRNPFGLDAEVS-EGGENFSVG 1375 (1495)
T ss_pred HHhhcEEECCCCeeeCc-cHHHHcCCCC------CCCHH----HHHHHHHHcCCHHHHHhCcCCCCceec-CCCCCCCHH
Confidence 78899999999999986 9999997531 22332 345555655553 35678887 456689999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 182 ERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 182 erqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
||||++|||||+++|+||+||||||+||+.+...|.+.|++.. +++|+|+++|+++ .+ ..+|+|++| ++|+++..|
T Consensus 1376 QrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~-ti-~~~DrIlVL-~~G~ivE~G 1451 (1495)
T PLN03232 1376 QRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN-TI-IDCDKILVL-SSGQVLEYD 1451 (1495)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH-HH-HhCCEEEEE-ECCEEEEEC
Confidence 9999999999999999999999999999999999999999875 4799999999985 34 559999999 899999999
Q ss_pred ChhhHHH
Q 046786 262 KGEDVIN 268 (604)
Q Consensus 262 ~~~~~~~ 268 (604)
+++++++
T Consensus 1452 t~~eLl~ 1458 (1495)
T PLN03232 1452 SPQELLS 1458 (1495)
T ss_pred CHHHHHh
Confidence 9998863
No 321
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.6e-36 Score=346.72 Aligned_cols=217 Identities=25% Similarity=0.448 Sum_probs=183.7
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~ 108 (604)
++..|+.+.+. ..++.+||+|+|+++++|+-+||+|||||||||.+-+|-..+. |++|.|.+||+++.+ .
T Consensus 988 I~~~~V~F~YP-sRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd-----p~~G~V~IDg~dik~lnl~~ 1061 (1228)
T KOG0055|consen 988 IEFRNVSFAYP-TRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD-----PDAGKVKIDGVDIKDLNLKW 1061 (1228)
T ss_pred EEEeeeEeeCC-CCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC-----CCCCeEEECCcccccCCHHH
Confidence 45555555543 4456789999999999999999999999999999999999885 679999999999864 5
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHH-----HHHHHHcCCCccccccccCccCCCcCHHHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHA-----EAVINQLGLARCRNSIIGGRLVRGLSGGER 183 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 183 (604)
+|+++|.|.|+|.||.. |++||+.|+. .+ .+.+|..+.+ .+.+ .+|.+-.||.|| ++...||||||
T Consensus 1062 LR~~i~lVsQEP~LF~~-TIrENI~YG~----~~-vs~~eIi~Aak~ANaH~FI--~sLP~GyDT~vG-erG~QLSGGQK 1132 (1228)
T KOG0055|consen 1062 LRKQIGLVSQEPVLFNG-TIRENIAYGS----EE-VSEEEIIEAAKLANAHNFI--SSLPQGYDTRVG-ERGVQLSGGQK 1132 (1228)
T ss_pred HHHhcceeccCchhhcc-cHHHHHhccC----CC-CCHHHHHHHHHHhhhHHHH--hcCcCcccCccC-cccCcCCchHH
Confidence 78999999999999975 9999999981 12 4444432221 1222 368899999999 45668999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecCh
Q 046786 184 KRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKG 263 (604)
Q Consensus 184 qRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~ 263 (604)
||++||||+++||+||||||.||+||+.+...+.+.|.+.. .|+|.|++.|.++ ..+-+|.|.++ ++|+++..|+=
T Consensus 1133 QRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLS--TIqnaD~I~Vi-~~G~VvE~GtH 1208 (1228)
T KOG0055|consen 1133 QRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLS--TIQNADVIAVL-KNGKVVEQGTH 1208 (1228)
T ss_pred HHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchh--hhhcCCEEEEE-ECCEEEecccH
Confidence 99999999999999999999999999999999999999976 4899999999986 35679999999 89999999998
Q ss_pred hhHHH
Q 046786 264 EDVIN 268 (604)
Q Consensus 264 ~~~~~ 268 (604)
++++.
T Consensus 1209 ~~L~~ 1213 (1228)
T KOG0055|consen 1209 DELLA 1213 (1228)
T ss_pred HHHHh
Confidence 88875
No 322
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=6.4e-36 Score=367.99 Aligned_cols=213 Identities=23% Similarity=0.354 Sum_probs=179.2
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~ 108 (604)
++..|+++.+.. +.+.+|+|+|++|+|||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .
T Consensus 1238 I~f~nVsf~Y~~--~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~-----p~~G~I~IDG~dI~~i~l~~ 1310 (1622)
T PLN03130 1238 IKFEDVVLRYRP--ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE-----LERGRILIDGCDISKFGLMD 1310 (1622)
T ss_pred EEEEEEEEEeCC--CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-----CCCceEEECCEecccCCHHH
Confidence 556666666532 23469999999999999999999999999999999999985 579999999999863 6
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCCCcCHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGL-------ARCRNSIIGGRLVRGLSGG 181 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgG 181 (604)
+|+++++|||++.+|+. |++|||.++. ..+++ .+.+.++..++ .+-.||.|| +....||||
T Consensus 1311 LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~tde----ei~~Al~~a~l~~~I~~lp~GLdt~Vg-e~G~nLSgG 1378 (1622)
T PLN03130 1311 LRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHNDA----DLWESLERAHLKDVIRRNSLGLDAEVS-EAGENFSVG 1378 (1622)
T ss_pred HHhccEEECCCCccccc-cHHHHhCcCC------CCCHH----HHHHHHHHcCcHHHHHhCccccCcccc-CCCCCCCHH
Confidence 78999999999999986 9999997531 12332 34455555544 345688888 456789999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 182 ERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 182 erqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
||||++|||||+++|+||+||||||+||+.+...|.+.|++.. +++|||+++|+++ .+ .-+|+|++| ++|+++.+|
T Consensus 1379 QrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~-tI-~~~DrIlVL-d~G~IvE~G 1454 (1622)
T PLN03130 1379 QRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN-TI-IDCDRILVL-DAGRVVEFD 1454 (1622)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChH-HH-HhCCEEEEE-ECCEEEEeC
Confidence 9999999999999999999999999999999999999999986 4899999999986 34 459999999 899999999
Q ss_pred ChhhHHH
Q 046786 262 KGEDVIN 268 (604)
Q Consensus 262 ~~~~~~~ 268 (604)
+++++++
T Consensus 1455 t~~eLl~ 1461 (1622)
T PLN03130 1455 TPENLLS 1461 (1622)
T ss_pred CHHHHHh
Confidence 9999863
No 323
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.2e-35 Score=334.22 Aligned_cols=211 Identities=25% Similarity=0.331 Sum_probs=169.4
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccc
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKR 111 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~ 111 (604)
+++..|+++.+. +++.+|+|+|+++++|++++|+|||||||||||++|+|+.+ |++|+|.+++ +.
T Consensus 4 ~i~~~nls~~~~---~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~-----p~~G~i~~~~-------~~ 68 (552)
T TIGR03719 4 IYTMNRVSKVVP---PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK-----EFNGEARPAP-------GI 68 (552)
T ss_pred EEEEeeEEEecC---CCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEecC-------CC
Confidence 456667665542 13579999999999999999999999999999999999985 5799999985 24
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHHHh-c------------CCCCCCHH--------------------HHHHHHHHHHH
Q 046786 112 RTGFVAQNNVFYPHLTVAETLVFTALL-R------------LPNSLKRE--------------------EKVLHAEAVIN 158 (604)
Q Consensus 112 ~i~yv~Q~~~l~~~lTv~e~l~f~~~~-~------------~~~~~~~~--------------------~~~~~v~~~l~ 158 (604)
.+|||+|++.+++.+||+||+.++... + ........ +...+++++++
T Consensus 69 ~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 148 (552)
T TIGR03719 69 KVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMD 148 (552)
T ss_pred EEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHh
Confidence 699999999999999999999875321 0 00000000 01235667788
Q ss_pred HcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 046786 159 QLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPA 238 (604)
Q Consensus 159 ~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~ 238 (604)
.+|+.. .+ +.++.|||||||||+||++|+.+|++|+|||||++||+.++..+.+.|+++ +.|||+++|++.
T Consensus 149 ~~~l~~-~~-----~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~~ 219 (552)
T TIGR03719 149 ALRCPP-WD-----ADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDRY 219 (552)
T ss_pred hCCCCc-cc-----CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCHH
Confidence 888853 34 456699999999999999999999999999999999999999999999886 359999999975
Q ss_pred hHHHhhcCeEEEEecCCeEE-EecChhhHHH
Q 046786 239 SSLFYMFNKILLLSSDGSSL-YFGKGEDVIN 268 (604)
Q Consensus 239 ~~i~~~~d~v~ll~~~G~~v-~~G~~~~~~~ 268 (604)
.+...+|++++| ++|+++ +.|+.++..+
T Consensus 220 -~~~~~~d~v~~l-~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 220 -FLDNVAGWILEL-DRGRGIPWEGNYSSWLE 248 (552)
T ss_pred -HHHhhcCeEEEE-ECCEEEEecCCHHHHHH
Confidence 677889999999 899976 7788776544
No 324
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-35 Score=333.25 Aligned_cols=191 Identities=25% Similarity=0.417 Sum_probs=162.4
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCC--CCC
Q 046786 47 EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNV--FYP 124 (604)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~--l~~ 124 (604)
+++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ |++|+|.++|+ +.+||++|+.. +++
T Consensus 330 ~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-----p~~G~i~~~~~-------~~i~~~~q~~~~~~~~ 397 (530)
T PRK15064 330 DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE-----PDSGTVKWSEN-------ANIGYYAQDHAYDFEN 397 (530)
T ss_pred CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCc-------eEEEEEcccccccCCC
Confidence 34569999999999999999999999999999999999975 57999999873 46999999864 566
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeC
Q 046786 125 HLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLA-RCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDE 203 (604)
Q Consensus 125 ~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDE 203 (604)
.+|++|++.+.. .. . ...++++++++.+|+. +..+ +.+.+||||||||++||++|+.+|++|+|||
T Consensus 398 ~~t~~~~~~~~~---~~---~--~~~~~~~~~l~~~~l~~~~~~-----~~~~~LSgGq~qrv~la~al~~~p~lllLDE 464 (530)
T PRK15064 398 DLTLFDWMSQWR---QE---G--DDEQAVRGTLGRLLFSQDDIK-----KSVKVLSGGEKGRMLFGKLMMQKPNVLVMDE 464 (530)
T ss_pred CCcHHHHHHHhc---cC---C--ccHHHHHHHHHHcCCChhHhc-----CcccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 799999986421 11 1 1134678899999994 4555 4566999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEE-EecChhhHH
Q 046786 204 PTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSL-YFGKGEDVI 267 (604)
Q Consensus 204 PtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v-~~G~~~~~~ 267 (604)
||+|||+.+...+.+.|+++ +.|||++|||+. .+...+|++++| ++|+++ +.|+++++.
T Consensus 465 Pt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l-~~g~i~~~~g~~~~~~ 524 (530)
T PRK15064 465 PTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEI-TPDGVVDFSGTYEEYL 524 (530)
T ss_pred CCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEE-ECCeEEEcCCCHHHHH
Confidence 99999999999999999987 359999999975 677889999999 899998 889877653
No 325
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9e-36 Score=296.53 Aligned_cols=190 Identities=32% Similarity=0.471 Sum_probs=162.7
Q ss_pred hheeeeEEEEEeccc---c--ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCC
Q 046786 32 MLKKVNMLVIIKNSD---E--EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS 106 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~---~--~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~ 106 (604)
+++..|+...+..+. . ...+++||||++++||+++|+|+||||||||-|+|.|+.+ |++|+|.++|+++.
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~-----pt~G~i~f~g~~i~ 78 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE-----PTSGEILFEGKDIT 78 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC-----CCCceEEEcCcchh
Confidence 345556655543321 1 2479999999999999999999999999999999999986 68999999999864
Q ss_pred hhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHH
Q 046786 107 AEVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRI 186 (604)
Q Consensus 107 ~~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 186 (604)
... +++..+++.++|+.+||.... -++++.+||||||||+
T Consensus 79 ~~~------------------------------------~~~~~~~v~elL~~Vgl~~~~----~~ryPhelSGGQrQRi 118 (268)
T COG4608 79 KLS------------------------------------KEERRERVLELLEKVGLPEEF----LYRYPHELSGGQRQRI 118 (268)
T ss_pred hcc------------------------------------hhHHHHHHHHHHHHhCCCHHH----hhcCCcccCchhhhhH
Confidence 311 345567899999999986521 2378999999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhh
Q 046786 187 SIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGED 265 (604)
Q Consensus 187 sia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~ 265 (604)
.|||||+.+|+++++|||||.||...+.+++++|+++.++ |.|.++++||.+ .+..++|++.+| ..|+++..|+.++
T Consensus 119 ~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~-vv~~isdri~VM-y~G~iVE~g~~~~ 196 (268)
T COG4608 119 GIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLS-VVRYISDRIAVM-YLGKIVEIGPTEE 196 (268)
T ss_pred HHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH-hhhhhcccEEEE-ecCceeEecCHHH
Confidence 9999999999999999999999999999999999999874 999999999975 788999999999 8999999999988
Q ss_pred HHH
Q 046786 266 VIN 268 (604)
Q Consensus 266 ~~~ 268 (604)
+..
T Consensus 197 ~~~ 199 (268)
T COG4608 197 VFS 199 (268)
T ss_pred Hhh
Confidence 854
No 326
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.4e-35 Score=304.34 Aligned_cols=230 Identities=26% Similarity=0.415 Sum_probs=197.2
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCC---h-
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS---A- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~---~- 107 (604)
.++..|+++.++...+...++++|||.+++||.+||+|+||||||-..+.+.|+++.....--+|+|.++|+++- +
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 366778888887777788999999999999999999999999999999999999874321223899999999872 2
Q ss_pred hcc----ccEEEEecCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHH
Q 046786 108 EVK----RRTGFVAQNNV--FYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGG 181 (604)
Q Consensus 108 ~~~----~~i~yv~Q~~~--l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 181 (604)
.++ .+|+++||++. |.|-.|+.+-+.-..++. ..+++++.++++.++|+.+|+.+....+ +.++.+||||
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H--rg~~~~~Ar~r~lelL~~VgI~~p~~rl--~~yPHeLSGG 161 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH--RGLSRAAARARALELLELVGIPEPEKRL--DAYPHELSGG 161 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHcCCCchhhhh--hhCCcccCcc
Confidence 222 37999999984 777778888777665543 4667888889999999999998765422 4789999999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEe
Q 046786 182 ERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYF 260 (604)
Q Consensus 182 erqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~ 260 (604)
|||||.||+||+++|++|+.||||++||...+.+|+++|++|.+ .|.+++++|||.+ -+-+++|+|.+| .+|+++..
T Consensus 162 qRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~-iVr~~ADrV~VM-~~G~ivE~ 239 (534)
T COG4172 162 QRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLG-IVRKFADRVYVM-QHGEIVET 239 (534)
T ss_pred hhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHH-HHHHhhhhEEEE-eccEEeec
Confidence 99999999999999999999999999999999999999999976 4999999999986 678899999999 89999999
Q ss_pred cChhhHH
Q 046786 261 GKGEDVI 267 (604)
Q Consensus 261 G~~~~~~ 267 (604)
|+++++.
T Consensus 240 ~~t~~lF 246 (534)
T COG4172 240 GTTETLF 246 (534)
T ss_pred CcHHHHh
Confidence 9988774
No 327
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1.5e-35 Score=333.09 Aligned_cols=201 Identities=21% Similarity=0.311 Sum_probs=165.3
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~ 108 (604)
++..|+++.+. +++.+|+|+|+++++||.+||+||||||||||+|+|+|.++ |++|+|.+||+++.. .
T Consensus 323 i~~~~v~f~y~---~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~~~~~~~~~ 394 (547)
T PRK10522 323 LELRNVTFAYQ---DNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ-----PQSGEILLDGKPVTAEQPED 394 (547)
T ss_pred EEEEEEEEEeC---CCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEECCCCCHHH
Confidence 44555555442 23469999999999999999999999999999999999985 679999999999853 5
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCc--cCCCcCHHHHHHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGR--LVRGLSGGERKRI 186 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~--~~~~LSgGerqRv 186 (604)
+++.++||+|++.+|+. |++|| . .. ...+.+++.++.+++.+..+ .++. ....||||||||+
T Consensus 395 ~~~~i~~v~q~~~lf~~-ti~~n---~------~~----~~~~~~~~~~~~~~l~~~~~--~~~~~~~G~~LSgGq~qRl 458 (547)
T PRK10522 395 YRKLFSAVFTDFHLFDQ-LLGPE---G------KP----ANPALVEKWLERLKMAHKLE--LEDGRISNLKLSKGQKKRL 458 (547)
T ss_pred HhhheEEEecChhHHHH-hhccc---c------Cc----hHHHHHHHHHHHcCCchhhh--ccccCCCCCCCCHHHHHHH
Confidence 67899999999998875 77776 1 11 12345778899999876433 2221 1358999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEe
Q 046786 187 SIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYF 260 (604)
Q Consensus 187 sia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~ 260 (604)
+|||+|+++|++|+||||||+||+.++..+.+.|.+..+ .|+|+|+++|+++ ....+|++++| ++|+++..
T Consensus 459 ~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~--~~~~~d~i~~l-~~G~i~e~ 530 (547)
T PRK10522 459 ALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH--YFIHADRLLEM-RNGQLSEL 530 (547)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH--HHHhCCEEEEE-ECCEEEEe
Confidence 999999999999999999999999999999999987654 5899999999984 46789999999 89999865
No 328
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.4e-35 Score=301.62 Aligned_cols=190 Identities=26% Similarity=0.406 Sum_probs=159.6
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEE-----------ECCEeCCh---hcc---c
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHIT-----------YNGKQFSA---EVK---R 111 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~-----------~~G~~~~~---~~~---~ 111 (604)
+.+|+|+| .+++||+++|+||||||||||||+|+|+++ |++|+|. ++|+++.. ..+ .
T Consensus 14 ~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~-----p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 87 (255)
T cd03236 14 SFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLK-----PNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDV 87 (255)
T ss_pred chhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCCceEeeccccchhhhhccCchhhhhhHHhhhccc
Confidence 35999999 599999999999999999999999999985 6799996 78887643 111 2
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHH
Q 046786 112 RTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQE 191 (604)
Q Consensus 112 ~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~ 191 (604)
.++|++|+..+++. ++.+++.+.. ......+.+.++++.+||.+..+ +.++.||||||||++||++
T Consensus 88 ~i~~~~~~~~~~~~-~~~~~i~~~l--------~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LS~G~~qrv~lara 153 (255)
T cd03236 88 KVIVKPQYVDLIPK-AVKGKVGELL--------KKKDERGKLDELVDQLELRHVLD-----RNIDQLSGGELQRVAIAAA 153 (255)
T ss_pred ceeeecchhccCch-HHHHHHHHHh--------chhHHHHHHHHHHHHcCCchhhc-----CChhhCCHHHHHHHHHHHH
Confidence 47999999888874 8888887642 12233456789999999987665 4456999999999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 192 LLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 192 L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
|+.+|++++|||||+|||+.+...+.+.|++++++|+|||+++|++. .+..++|++++| +|++.+.|
T Consensus 154 l~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l--~~~~~~~~ 220 (255)
T cd03236 154 LARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDYIHCL--YGEPGAYG 220 (255)
T ss_pred HHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEE--CCCCCcce
Confidence 99999999999999999999999999999999888999999999975 577789999999 46666544
No 329
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=3.6e-35 Score=330.46 Aligned_cols=207 Identities=20% Similarity=0.303 Sum_probs=166.8
Q ss_pred heeeeEEEEEecccc-ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 33 LKKVNMLVIIKNSDE-EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
++..|+++.+..... ++.+|+|+|+++++||.++|+||||||||||+|+|+|.++ |++|+|.+||.++.+
T Consensus 338 i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-----p~~G~i~~~g~~i~~~~~~ 412 (555)
T TIGR01194 338 IELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI-----PQEGEILLDGAAVSADSRD 412 (555)
T ss_pred EEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCCCCHH
Confidence 455566665533211 2469999999999999999999999999999999999885 679999999999853
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc-cCccCCCcCHHHHHHH
Q 046786 108 EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSII-GGRLVRGLSGGERKRI 186 (604)
Q Consensus 108 ~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v-g~~~~~~LSgGerqRv 186 (604)
.+++.++||+|++.+|.. |+++|.. + +...+++++.++.+++.+..+... |-+....||||||||+
T Consensus 413 ~~~~~i~~v~q~~~lf~~-ti~~n~~-------~-----~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRl 479 (555)
T TIGR01194 413 DYRDLFSAIFADFHLFDD-LIGPDEG-------E-----HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRL 479 (555)
T ss_pred HHHhhCcEEccChhhhhh-hhhcccc-------c-----chhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHH
Confidence 567889999999998875 7888731 1 112345778899999876543221 2122367999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH-HHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEe
Q 046786 187 SIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLS-KLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYF 260 (604)
Q Consensus 187 sia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~-~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~ 260 (604)
+|||+|+.+|++++|||||++||+.+...+.+.+. .++.+|+|+|+++|+++ ..+.+|++++| ++|+++..
T Consensus 480 alaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l-~~G~i~~~ 551 (555)
T TIGR01194 480 ALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKL-AAGCIVKD 551 (555)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEE-ECCEEEEe
Confidence 99999999999999999999999999999998764 56567899999999985 45789999999 89998754
No 330
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2.8e-35 Score=361.77 Aligned_cols=213 Identities=22% Similarity=0.364 Sum_probs=179.2
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~ 108 (604)
++..|+++.+.. +.+.+|+||||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .
T Consensus 1309 I~f~nVsf~Y~~--~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~-----p~~G~I~IDG~di~~i~l~~ 1381 (1560)
T PTZ00243 1309 LVFEGVQMRYRE--GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE-----VCGGEIRVNGREIGAYGLRE 1381 (1560)
T ss_pred EEEEEEEEEeCC--CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEEcccCCHHH
Confidence 555566665532 23459999999999999999999999999999999999986 579999999999853 6
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccCCCcCHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLAR-------CRNSIIGGRLVRGLSGG 181 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgG 181 (604)
+|+.+|||||++.+|+. |++|||... ...++ +.+.+.++..|+.+ -.||.+|. ....||||
T Consensus 1382 LR~~I~iVpQdp~LF~g-TIreNIdp~------~~~sd----eeI~~Al~~a~l~~~I~~lp~Gldt~vge-~G~nLSgG 1449 (1560)
T PTZ00243 1382 LRRQFSMIPQDPVLFDG-TVRQNVDPF------LEASS----AEVWAALELVGLRERVASESEGIDSRVLE-GGSNYSVG 1449 (1560)
T ss_pred HHhcceEECCCCccccc-cHHHHhCcc------cCCCH----HHHHHHHHHCCChHHHhhCcccccccccC-CcCcCCHH
Confidence 78999999999999986 999999532 12233 34666777776643 46888884 56689999
Q ss_pred HHHHHHHHHHHhhC-CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEe
Q 046786 182 ERKRISIGQELLIN-PSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYF 260 (604)
Q Consensus 182 erqRvsia~~L~~~-p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~ 260 (604)
||||++|||||+++ |+||+||||||+||+.+...|.+.|++.. +++|||+++|+++ ....+|+|++| ++|+++..
T Consensus 1450 QrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL-d~G~VvE~ 1525 (1560)
T PTZ00243 1450 QRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVM-DHGAVAEM 1525 (1560)
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEE-ECCEEEEE
Confidence 99999999999996 89999999999999999999999999865 4799999999985 45679999999 89999999
Q ss_pred cChhhHHH
Q 046786 261 GKGEDVIN 268 (604)
Q Consensus 261 G~~~~~~~ 268 (604)
|+++++++
T Consensus 1526 Gt~~eLl~ 1533 (1560)
T PTZ00243 1526 GSPRELVM 1533 (1560)
T ss_pred CCHHHHHh
Confidence 99998863
No 331
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.6e-35 Score=282.27 Aligned_cols=215 Identities=28% Similarity=0.376 Sum_probs=175.2
Q ss_pred eeeEEEEEec-cccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--h--c
Q 046786 35 KVNMLVIIKN-SDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--E--V 109 (604)
Q Consensus 35 ~~~~~~~~~~-~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--~--~ 109 (604)
..|..+...+ ...++++|+++|++|.+|+++.|+|.||||||||+|+|+|.+. |++|+|.++|.++++ . .
T Consensus 4 ~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~-----~t~G~I~Idg~dVtk~~~~~R 78 (263)
T COG1101 4 LSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK-----PTSGQILIDGVDVTKKSVAKR 78 (263)
T ss_pred cccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc-----cCCceEEECceecccCCHHHH
Confidence 3444444433 3456889999999999999999999999999999999999885 689999999999975 2 2
Q ss_pred cccEEEEecCCC--CCCCCCHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHHHc--CCCccccccccCccCCCcCHHH
Q 046786 110 KRRTGFVAQNNV--FYPHLTVAETLVFTALLRLPNSLKR---EEKVLHAEAVINQL--GLARCRNSIIGGRLVRGLSGGE 182 (604)
Q Consensus 110 ~~~i~yv~Q~~~--l~~~lTv~e~l~f~~~~~~~~~~~~---~~~~~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGe 182 (604)
...++-|+|++. .+|.||+.||+..+..-...++.+. ..+.+.-.+-++.+ ||++..++.+| -|||||
T Consensus 79 A~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig-----lLSGGQ 153 (263)
T COG1101 79 ANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG-----LLSGGQ 153 (263)
T ss_pred hhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh-----hccchH
Confidence 346888999975 6999999999998654211122322 22333345556655 56777887776 899999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 183 RKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 183 rqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
||-++++.|-++.|+||+|||-|++|||.++..+++.-.++.+ .+.|.+++||... +...+-+|+++| ++|+|+.+-
T Consensus 154 RQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~-~Al~yG~RlImL-h~G~IvlDv 231 (263)
T COG1101 154 RQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME-DALDYGNRLIML-HSGKIVLDV 231 (263)
T ss_pred HHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHH-HHHhhCCeEEEE-eCCeEEEEc
Confidence 9999999999999999999999999999999999999999976 4789999999986 567899999999 999999753
No 332
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2.6e-35 Score=359.49 Aligned_cols=212 Identities=23% Similarity=0.389 Sum_probs=168.5
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEEC-CEeCCh----
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYN-GKQFSA---- 107 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~-G~~~~~---- 107 (604)
++..|+.+.+.. .+++.+|+|+|+++++||++||+||||||||||+++|+|+++ |++|+|.++ |.++..
T Consensus 383 I~~~nVsf~Y~~-~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~-----p~~G~I~i~~g~~i~~~~~~ 456 (1466)
T PTZ00265 383 IQFKNVRFHYDT-RKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD-----PTEGDIIINDSHNLKDINLK 456 (1466)
T ss_pred EEEEEEEEEcCC-CCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc-----CCCCeEEEeCCcchhhCCHH
Confidence 455565555432 123569999999999999999999999999999999999985 679999994 677642
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHh-cC---------CCC-----------------------------C----
Q 046786 108 EVKRRTGFVAQNNVFYPHLTVAETLVFTALL-RL---------PNS-----------------------------L---- 144 (604)
Q Consensus 108 ~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~-~~---------~~~-----------------------------~---- 144 (604)
.+|+.||||+|++.+|+. |++||+.++... +. +.. .
T Consensus 457 ~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 535 (1466)
T PTZ00265 457 WWRSKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELI 535 (1466)
T ss_pred HHHHhccEecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhh
Confidence 467889999999999975 999999986310 00 000 0
Q ss_pred -----CHHHHHHHHHHHHHHcCCC-------ccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHH
Q 046786 145 -----KREEKVLHAEAVINQLGLA-------RCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTM 212 (604)
Q Consensus 145 -----~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~ 212 (604)
......+.+.++++.+++. +..||.+| +....||||||||++|||||+.+|+||+||||||+||+.+
T Consensus 536 ~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg-~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~s 614 (1466)
T PTZ00265 536 EMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVG-SNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKS 614 (1466)
T ss_pred hcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeC-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence 0001124566777777654 44578888 4578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecCC
Q 046786 213 AKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSDG 255 (604)
Q Consensus 213 ~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G 255 (604)
+..+.+.|+++++ +|+|+|+++|+++ .+ ..+|++++| ++|
T Consensus 615 e~~i~~~L~~~~~~~g~TvIiIsHrls-~i-~~aD~Iivl-~~g 655 (1466)
T PTZ00265 615 EYLVQKTINNLKGNENRITIIIAHRLS-TI-RYANTIFVL-SNR 655 (1466)
T ss_pred HHHHHHHHHHHhhcCCCEEEEEeCCHH-HH-HhCCEEEEE-eCC
Confidence 9999999999986 5899999999986 34 789999999 665
No 333
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=3.6e-35 Score=361.38 Aligned_cols=213 Identities=18% Similarity=0.288 Sum_probs=178.9
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~ 108 (604)
++..|+++.+... .+.+|+|||++|+|||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .
T Consensus 1285 I~f~nVsf~Y~~~--~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~-----~~~G~I~IdG~dI~~i~~~~ 1357 (1522)
T TIGR00957 1285 VEFRNYCLRYRED--LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE-----SAEGEIIIDGLNIAKIGLHD 1357 (1522)
T ss_pred EEEEEEEEEeCCC--CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc-----CCCCeEEECCEEccccCHHH
Confidence 5566666665322 2469999999999999999999999999999999999985 579999999999863 5
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCCCcCHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLA-------RCRNSIIGGRLVRGLSGG 181 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgG 181 (604)
+|++++||||++.+|+. |++|||.... ..+++ .+.+.++..++. +-.||.||. ....||||
T Consensus 1358 LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~sde----ei~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSgG 1425 (1522)
T TIGR00957 1358 LRFKITIIPQDPVLFSG-SLRMNLDPFS------QYSDE----EVWWALELAHLKTFVSALPDKLDHECAE-GGENLSVG 1425 (1522)
T ss_pred HHhcCeEECCCCcccCc-cHHHHcCccc------CCCHH----HHHHHHHHcCcHHHHhhCccCCCceecC-CCCcCCHH
Confidence 78999999999999987 9999996211 22332 355566666553 456888874 56689999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 182 ERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 182 erqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
||||++|||||+++|+||+||||||+||+.+...|.+.|++.. +++|||+++|+++ ...-+|+|++| ++|+++.+|
T Consensus 1426 QrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVl-d~G~IvE~G 1501 (1522)
T TIGR00957 1426 QRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVL-DKGEVAEFG 1501 (1522)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEE-ECCEEEEEC
Confidence 9999999999999999999999999999999999999999875 4799999999985 34568999999 899999999
Q ss_pred ChhhHHH
Q 046786 262 KGEDVIN 268 (604)
Q Consensus 262 ~~~~~~~ 268 (604)
+++++++
T Consensus 1502 ~~~eLl~ 1508 (1522)
T TIGR00957 1502 APSNLLQ 1508 (1522)
T ss_pred CHHHHHh
Confidence 9998864
No 334
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=7.6e-35 Score=327.91 Aligned_cols=183 Identities=27% Similarity=0.372 Sum_probs=159.4
Q ss_pred eeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCHHH
Q 046786 51 ILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTVAE 130 (604)
Q Consensus 51 iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~e 130 (604)
.|+++|+++++||+++|+||||||||||||+|+|+++ |++|+|.++ ..++|++|+..+.+.+||+|
T Consensus 354 ~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~-----p~~G~I~~~---------~~i~y~~Q~~~~~~~~tv~e 419 (590)
T PRK13409 354 SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK-----PDEGEVDPE---------LKISYKPQYIKPDYDGTVED 419 (590)
T ss_pred EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEEe---------eeEEEecccccCCCCCcHHH
Confidence 5999999999999999999999999999999999985 579999986 15999999988888999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 046786 131 TLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDS 210 (604)
Q Consensus 131 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~ 210 (604)
++.+.... ... ...++++++.+||.+..| +.+.+|||||||||+||++|+.+|++|+|||||+|||+
T Consensus 420 ~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~-----~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~ 486 (590)
T PRK13409 420 LLRSITDD-----LGS---SYYKSEIIKPLQLERLLD-----KNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDV 486 (590)
T ss_pred HHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHh-----CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 99875321 111 124678999999987666 45669999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecCh
Q 046786 211 TMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKG 263 (604)
Q Consensus 211 ~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~ 263 (604)
.++..+.+.|++++++ |+|||+++||+. .+..++|+++++ + |++...|..
T Consensus 487 ~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl-~-~~~~~~g~~ 537 (590)
T PRK13409 487 EQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVF-E-GEPGKHGHA 537 (590)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-c-Ccceeeeec
Confidence 9999999999999874 899999999975 677889999999 4 588877763
No 335
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1e-34 Score=326.77 Aligned_cols=191 Identities=24% Similarity=0.394 Sum_probs=158.1
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCC-CCCCC
Q 046786 47 EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNN-VFYPH 125 (604)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~-~l~~~ 125 (604)
+++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ |++|+|.+++. ..+||++|+. .+++.
T Consensus 335 ~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-----p~~G~i~~~~~-------~~i~~v~q~~~~~~~~ 402 (556)
T PRK11819 335 GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ-----PDSGTIKIGET-------VKLAYVDQSRDALDPN 402 (556)
T ss_pred CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCc-------eEEEEEeCchhhcCCC
Confidence 34679999999999999999999999999999999999885 57999999542 2599999996 68889
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 046786 126 LTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLAR-CRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEP 204 (604)
Q Consensus 126 lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEP 204 (604)
+||+|++.+...... .... ...+.++++.+|+.+ ..+ +.+.+|||||||||+||++|+.+|++|+||||
T Consensus 403 ~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~-----~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 472 (556)
T PRK11819 403 KTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQ-----KKVGVLSGGERNRLHLAKTLKQGGNVLLLDEP 472 (556)
T ss_pred CCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhc-----CchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999999988643211 1111 123457899999964 345 45669999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEec-CCeEE-EecChh
Q 046786 205 TSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSS-DGSSL-YFGKGE 264 (604)
Q Consensus 205 tsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~-~G~~v-~~G~~~ 264 (604)
|+|||+.++..+.+.|+++. | |||++||++. .+..++|+++++ + +|++. +.|+.+
T Consensus 473 t~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l-~~~g~~~~~~g~~~ 529 (556)
T PRK11819 473 TNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAF-EGDSQVEWFEGNFQ 529 (556)
T ss_pred CCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEE-ECCCeEEEecCCHH
Confidence 99999999999999999983 4 8999999975 678899999999 6 47776 556443
No 336
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.5e-35 Score=276.83 Aligned_cols=218 Identities=28% Similarity=0.407 Sum_probs=185.2
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECC-EeCCh----
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNG-KQFSA---- 107 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G-~~~~~---- 107 (604)
++..+++++. ++-.+|+|+||++.+||+-+|+|||||||||++++|+|..+ |+.|+++++| .++..
T Consensus 6 L~~~~vsVsF----~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr-----p~~G~v~f~g~~dl~~~~e~ 76 (249)
T COG4674 6 LYLDGVSVSF----GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR-----PQEGEVLFDGDTDLTKLPEH 76 (249)
T ss_pred EEEeceEEEE----cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCC-----CCcceEEEcCchhhccCCHH
Confidence 4444555543 55679999999999999999999999999999999999875 6789999999 66642
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHH
Q 046786 108 -EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPN-----SLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGG 181 (604)
Q Consensus 108 -~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 181 (604)
..+..||-=+|.+..|+++||+|||+.+.....+- .....+.+.+++++|+..||.+.+|.. ...||-|
T Consensus 77 ~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~-----A~~LSHG 151 (249)
T COG4674 77 RIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRL-----AALLSHG 151 (249)
T ss_pred HHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhh-----hhhhccc
Confidence 24567999999999999999999999876432110 011234456899999999999988844 4589999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 182 ERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 182 erqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
|||++.|++-|+.+|++|+||||++|+--....+.-++|++++. +++|+++.||+. -+-+++|++.+| ++|.+...|
T Consensus 152 qKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~-Fvr~~A~~VTVl-h~G~VL~EG 228 (249)
T COG4674 152 QKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMG-FVREIADKVTVL-HEGSVLAEG 228 (249)
T ss_pred hhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHH-HHHHhhheeEEE-eccceeecc
Confidence 99999999999999999999999999999999999999999986 589999999986 578899999999 999999999
Q ss_pred ChhhHH
Q 046786 262 KGEDVI 267 (604)
Q Consensus 262 ~~~~~~ 267 (604)
+.+++.
T Consensus 229 sld~v~ 234 (249)
T COG4674 229 SLDEVQ 234 (249)
T ss_pred cHHHhh
Confidence 988764
No 337
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.6e-34 Score=325.10 Aligned_cols=191 Identities=25% Similarity=0.400 Sum_probs=157.9
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCC-CCCCC
Q 046786 47 EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNN-VFYPH 125 (604)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~-~l~~~ 125 (604)
+++.+|+|+|++|++||+++|+|||||||||||++|+|..+ |++|+|.+++. ..+||++|+. .+++.
T Consensus 333 ~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-----p~~G~i~~~~~-------~~i~~v~q~~~~~~~~ 400 (552)
T TIGR03719 333 GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ-----PDSGTIKIGET-------VKLAYVDQSRDALDPN 400 (552)
T ss_pred CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCeEEEECCc-------eEEEEEeCCccccCCC
Confidence 34679999999999999999999999999999999999885 57999999542 2599999986 47888
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 046786 126 LTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLAR-CRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEP 204 (604)
Q Consensus 126 lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEP 204 (604)
+||.|++.+..... ..... ..++.++++.+|+.+ ..+ +.+..|||||||||+||++|+.+|++||||||
T Consensus 401 ~tv~e~l~~~~~~~---~~~~~--~~~~~~~l~~~~l~~~~~~-----~~~~~LSgGe~qrv~la~al~~~p~lllLDEP 470 (552)
T TIGR03719 401 KTVWEEISGGLDII---QLGKR--EVPSRAYVGRFNFKGSDQQ-----KKVGQLSGGERNRVHLAKTLKSGGNVLLLDEP 470 (552)
T ss_pred CcHHHHHHhhcccc---ccCcc--hHHHHHHHHhCCCChhHhc-----CchhhCCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 99999998864321 11111 123557899999964 345 45669999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecC-CeEE-EecChh
Q 046786 205 TSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSD-GSSL-YFGKGE 264 (604)
Q Consensus 205 tsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~-G~~v-~~G~~~ 264 (604)
|+|||+.+...+.+.|+++. | |||++||++. .+..++|++++| ++ |++. +.|+.+
T Consensus 471 t~~LD~~~~~~l~~~l~~~~--~-~viivsHd~~-~~~~~~d~i~~l-~~~~~~~~~~g~~~ 527 (552)
T TIGR03719 471 TNDLDVETLRALEEALLEFA--G-CAVVISHDRW-FLDRIATHILAF-EGDSHVEWFEGNYS 527 (552)
T ss_pred CCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCHH-HHHHhCCEEEEE-ECCCeEEEeCCCHH
Confidence 99999999999999999983 4 8999999975 677889999999 65 6776 556543
No 338
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-35 Score=309.18 Aligned_cols=216 Identities=30% Similarity=0.510 Sum_probs=178.9
Q ss_pred eeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----hc
Q 046786 34 KKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----EV 109 (604)
Q Consensus 34 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~~ 109 (604)
+..|+++.+ ..+|++|+||||++.||+.+|++||||+||||++|+|-.... ..+|.|.+||+++.. .+
T Consensus 539 ~fsnvtF~Y---~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd-----v~sGsI~iDgqdIrnvt~~SL 610 (790)
T KOG0056|consen 539 EFSNVTFAY---DPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD-----VNSGSITIDGQDIRNVTQSSL 610 (790)
T ss_pred EEEEeEEec---CCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh-----ccCceEEEcCchHHHHHHHHH
Confidence 344444433 356889999999999999999999999999999999999874 469999999999853 57
Q ss_pred cccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHH--HHHHH-HHHcCCCccccccccCccCCCcCHHHHHHH
Q 046786 110 KRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVL--HAEAV-INQLGLARCRNSIIGGRLVRGLSGGERKRI 186 (604)
Q Consensus 110 ~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~--~v~~~-l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 186 (604)
|+.||.||||..+|.+ |+..|++|+. | +.+.++..+ ++..+ =+.+++.+..+|+||.+ .-.|||||||||
T Consensus 611 Rs~IGVVPQDtvLFNd-TI~yNIryak----~-~AsneevyaAAkAA~IHdrIl~fPegY~t~VGER-GLkLSGGEKQRV 683 (790)
T KOG0056|consen 611 RSSIGVVPQDTVLFND-TILYNIRYAK----P-SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGER-GLKLSGGEKQRV 683 (790)
T ss_pred HHhcCcccCcceeecc-eeeeheeecC----C-CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhc-ccccCCcchhhH
Confidence 8999999999999976 9999999862 1 223333222 22222 24578899999999954 456999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhH
Q 046786 187 SIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266 (604)
Q Consensus 187 sia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~ 266 (604)
+|||+++++|.+++|||.||+||..+...|...|.+++. |+|-|++.|..+. + --+|.++++ ++|+++..|.-+++
T Consensus 684 AiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLST-i-vnAD~ILvi-~~G~IvErG~HeeL 759 (790)
T KOG0056|consen 684 AIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLST-I-VNADLILVI-SNGRIVERGRHEEL 759 (790)
T ss_pred HHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehh-e-ecccEEEEE-eCCeEeecCcHHHH
Confidence 999999999999999999999999999999999999996 7899999999874 3 358999999 89999999987766
Q ss_pred HH
Q 046786 267 IN 268 (604)
Q Consensus 267 ~~ 268 (604)
+.
T Consensus 760 l~ 761 (790)
T KOG0056|consen 760 LK 761 (790)
T ss_pred Hh
Confidence 53
No 339
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.3e-34 Score=353.32 Aligned_cols=212 Identities=21% Similarity=0.327 Sum_probs=179.0
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~ 108 (604)
++..|+++.+.. +.+.+|+|||++|++||.+||+|+||||||||+++|.|+++ ++|+|.+||.++.. .
T Consensus 1218 I~f~nVs~~Y~~--~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~------~~G~I~IdG~di~~i~~~~ 1289 (1490)
T TIGR01271 1218 MDVQGLTAKYTE--AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS------TEGEIQIDGVSWNSVTLQT 1289 (1490)
T ss_pred EEEEEEEEEeCC--CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC------CCcEEEECCEEcccCCHHH
Confidence 555666665532 34679999999999999999999999999999999999874 38999999999863 5
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCCCcCHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLA-------RCRNSIIGGRLVRGLSGG 181 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgG 181 (604)
+|++++||||++.+|+. |++|||.... ..++ +.+.++++..+|. +-.||.||+ ....||||
T Consensus 1290 lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~td----eei~~aL~~~~L~~~i~~lp~GLdt~v~e-~G~nLSgG 1357 (1490)
T TIGR01271 1290 WRKAFGVIPQKVFIFSG-TFRKNLDPYE------QWSD----EEIWKVAEEVGLKSVIEQFPDKLDFVLVD-GGYVLSNG 1357 (1490)
T ss_pred HHhceEEEeCCCccCcc-CHHHHhCccc------CCCH----HHHHHHHHHCCCHHHHHhCcccccccccc-CCCcCCHH
Confidence 78899999999999986 9999995321 1222 3566777777764 346788873 45689999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 182 ERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 182 erqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
||||++|||||+++|+||+||||||+||+.+...|.+.|++..+ ++|||+++|.++ ....+|+|++| ++|+++.+|
T Consensus 1358 QrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~-~~TvI~IaHRl~--ti~~~DrIlvL-~~G~ivE~g 1433 (1490)
T TIGR01271 1358 HKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFS-NCTVILSEHRVE--ALLECQQFLVI-EGSSVKQYD 1433 (1490)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH--HHHhCCEEEEE-ECCEEEEeC
Confidence 99999999999999999999999999999999999999998754 799999999985 34569999999 899999999
Q ss_pred ChhhHHH
Q 046786 262 KGEDVIN 268 (604)
Q Consensus 262 ~~~~~~~ 268 (604)
+++++++
T Consensus 1434 ~p~~Ll~ 1440 (1490)
T TIGR01271 1434 SIQKLLN 1440 (1490)
T ss_pred CHHHHHc
Confidence 9998863
No 340
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=1.6e-34 Score=338.98 Aligned_cols=207 Identities=29% Similarity=0.508 Sum_probs=191.6
Q ss_pred eeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-----hccccEEEEecCCCCCCC
Q 046786 51 ILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-----EVKRRTGFVAQNNVFYPH 125 (604)
Q Consensus 51 iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-----~~~~~i~yv~Q~~~l~~~ 125 (604)
+++++|+.+++||+.+++|||||||||++|+|.|..+ |++|++.++|.++.. +.++.+||+||+|.+.+.
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~-----~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~ 654 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK-----PTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEE 654 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc-----CCcceEEEecCccccccchhhhhhhcccCCchhhhhhh
Confidence 9999999999999999999999999999999999885 689999999999853 267889999999999999
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 046786 126 LTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPT 205 (604)
Q Consensus 126 lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPt 205 (604)
+|.+|++.+.++++ +.+.++..+.++.+++.+||.+.+|+. ++.+|||+|||+++|.+|+.+|++++|||||
T Consensus 655 lT~rEhL~~~arlr---G~~~~di~~~v~~ll~~~~L~~~~~~~-----~~~ySgG~kRkLs~aialig~p~vi~LDEPs 726 (885)
T KOG0059|consen 655 LTGREHLEFYARLR---GLPRSDIGSAIEKLLRLVGLGPYANKQ-----VRTYSGGNKRRLSFAIALIGDPSVILLDEPS 726 (885)
T ss_pred ccHHHHHHHHHHHc---CCChhHHHHHHHHHHHHcCChhhhccc-----hhhCCCcchhhHHHHHHHhcCCCEEEecCCC
Confidence 99999999999987 456666667799999999999998865 4599999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHHHHHHh
Q 046786 206 SGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVINYFAG 272 (604)
Q Consensus 206 sgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~~~f~~ 272 (604)
+|+||.+++.+.++++++.++|+.||+|||... +...+|||+.+| .+|++...|+++++...|.+
T Consensus 727 tGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMe-E~EaLCtR~aIm-v~G~l~ciGs~q~LKsrfG~ 791 (885)
T KOG0059|consen 727 TGLDPKARRHLWDIIARLRKNGKAIILTSHSME-EAEALCTRTAIM-VIGQLRCIGSPQELKSRYGS 791 (885)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHHhhhhhee-ecCeeEEecChHHHHhhcCC
Confidence 999999999999999999998889999999964 789999999999 89999999999999988765
No 341
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.1e-33 Score=276.53 Aligned_cols=205 Identities=26% Similarity=0.368 Sum_probs=182.3
Q ss_pred ccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCC
Q 046786 46 DEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPH 125 (604)
Q Consensus 46 ~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~ 125 (604)
.....+|+||||++++||.+||+|+||||||||||+|+|.++ |++|+|.++|+-... +--.. .+.|.
T Consensus 37 ~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~-----Pt~G~v~v~G~v~~l-i~lg~-------Gf~pe 103 (249)
T COG1134 37 VAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK-----PTSGKVKVTGKVAPL-IELGA-------GFDPE 103 (249)
T ss_pred cceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC-----CCCceEEEcceEehh-hhccc-------CCCcc
Confidence 345779999999999999999999999999999999999986 789999999974321 11112 34577
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 046786 126 LTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPT 205 (604)
Q Consensus 126 lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPt 205 (604)
+|.+||+.+-..+. ++++++.+++++++++.-+|.+..| .+++.+|.||+=|++.|.+...+|+||++||-.
T Consensus 104 lTGreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~-----~PvktYSSGM~aRLaFsia~~~~pdILllDEvl 175 (249)
T COG1134 104 LTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFID-----QPVKTYSSGMYARLAFSVATHVEPDILLLDEVL 175 (249)
T ss_pred cchHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhh-----CchhhccHHHHHHHHHhhhhhcCCCEEEEehhh
Confidence 99999999987653 5788899999999999999999888 456799999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHHHHHHhC
Q 046786 206 SGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVINYFAGI 273 (604)
Q Consensus 206 sgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~~~f~~~ 273 (604)
+--|+.=++.-.+.++++.++++|||+++|++. .+.++||++++| ++|++.+.|.++++.++|.+.
T Consensus 176 avGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~-~I~~~Cd~~i~l-~~G~i~~~G~~~~vi~~Y~~~ 241 (249)
T COG1134 176 AVGDAAFQEKCLERLNELVEKNKTIVLVSHDLG-AIKQYCDRAIWL-EHGQIRMEGSPEEVIPAYEED 241 (249)
T ss_pred hcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhcCeeEEE-eCCEEEEcCCHHHHHHHHHHh
Confidence 999999999999999999888899999999976 799999999999 899999999999999998764
No 342
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-34 Score=324.61 Aligned_cols=191 Identities=26% Similarity=0.425 Sum_probs=160.2
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCC--CCCC
Q 046786 47 EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNN--VFYP 124 (604)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~--~l~~ 124 (604)
+++.+|+|+|++|++|++++|+||||||||||||+|+|..+ |++|+|.+++. ..+||++|+. .+.+
T Consensus 323 ~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~~-------~~igy~~Q~~~~~l~~ 390 (638)
T PRK10636 323 GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA-----PVSGEIGLAKG-------IKLGYFAQHQLEFLRA 390 (638)
T ss_pred CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEECCC-------EEEEEecCcchhhCCc
Confidence 34679999999999999999999999999999999999885 67999999742 2599999974 3556
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeC
Q 046786 125 HLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLAR-CRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDE 203 (604)
Q Consensus 125 ~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDE 203 (604)
..|+.+++.- .. .....+++.++|+.+++.. ..+ +.++.|||||||||+||++|+.+|++|||||
T Consensus 391 ~~~~~~~~~~---~~------~~~~~~~~~~~L~~~~l~~~~~~-----~~~~~LSgGekqRl~La~~l~~~p~lLlLDE 456 (638)
T PRK10636 391 DESPLQHLAR---LA------PQELEQKLRDYLGGFGFQGDKVT-----EETRRFSGGEKARLVLALIVWQRPNLLLLDE 456 (638)
T ss_pred cchHHHHHHH---hC------chhhHHHHHHHHHHcCCChhHhc-----CchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 6788777531 11 1122356789999999963 455 3456999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEE-EecChhhHHH
Q 046786 204 PTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSL-YFGKGEDVIN 268 (604)
Q Consensus 204 PtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v-~~G~~~~~~~ 268 (604)
||+|||+.+...+.+.|+++ .| |||++|||+. .+..++|++++| .+|+++ |.|+.++..+
T Consensus 457 Pt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~-~~~~~~d~i~~l-~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 457 PTNHLDLDMRQALTEALIDF--EG-ALVVVSHDRH-LLRSTTDDLYLV-HDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred CCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCHH-HHHHhCCEEEEE-ECCEEEEcCCCHHHHHH
Confidence 99999999999999999998 34 9999999975 678899999999 899997 8898887644
No 343
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=5e-34 Score=274.01 Aligned_cols=146 Identities=30% Similarity=0.482 Sum_probs=128.5
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCC
Q 046786 47 EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHL 126 (604)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~l 126 (604)
+++.+++++ +++++||+++|+||||||||||+|+|+|+++ |++|+|.++|++ ++|++|+..
T Consensus 11 ~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~--------i~~~~q~~~----- 71 (177)
T cd03222 11 GVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLI-----PNGDNDEWDGIT--------PVYKPQYID----- 71 (177)
T ss_pred CCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCC-----CCCcEEEECCEE--------EEEEcccCC-----
Confidence 456788885 8999999999999999999999999999985 679999999863 789888532
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 046786 127 TVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTS 206 (604)
Q Consensus 127 Tv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPts 206 (604)
||||||||++||++|+.+|++++|||||+
T Consensus 72 ---------------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 72 ---------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred ---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 99999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCC-CEEEEEecCCchHHHhhcCeEEEEecCCeEEEe--cChh
Q 046786 207 GLDSTMAKKILVSLSKLAEGG-RTILMTIHQPASSLFYMFNKILLLSSDGSSLYF--GKGE 264 (604)
Q Consensus 207 gLD~~~~~~i~~~l~~la~~g-~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~--G~~~ 264 (604)
|||+.++..+.+.++++++++ .|||+++|++. .+...+|++++| +++-.++. |+|.
T Consensus 101 ~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l-~~~~~~~~~~~~~~ 159 (177)
T cd03222 101 YLDIEQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVF-EGEPGVYGIASQPK 159 (177)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEE-cCCCccceeccCCc
Confidence 999999999999999998765 99999999975 567789999999 66655544 5554
No 344
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=5.6e-34 Score=273.41 Aligned_cols=162 Identities=24% Similarity=0.317 Sum_probs=135.3
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCC
Q 046786 47 EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHL 126 (604)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~l 126 (604)
..+.+|+|+|+++++|++++|+||||||||||||+|.+ ++|++.++|... ...++.++|++|
T Consensus 6 ~~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~---------~~G~v~~~~~~~-~~~~~~~~~~~q-------- 67 (176)
T cd03238 6 ANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY---------ASGKARLISFLP-KFSRNKLIFIDQ-------- 67 (176)
T ss_pred eeeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh---------cCCcEEECCccc-ccccccEEEEhH--------
Confidence 34679999999999999999999999999999999953 279999988732 222345888887
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCCCcCHHHHHHHHHHHHHhhC--CCeEEEeC
Q 046786 127 TVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARC-RNSIIGGRLVRGLSGGERKRISIGQELLIN--PSLLFLDE 203 (604)
Q Consensus 127 Tv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRvsia~~L~~~--p~illLDE 203 (604)
.+.++.++|... .+ +.++.||||||||++||++|+.+ |++++|||
T Consensus 68 ---------------------------~~~l~~~~L~~~~~~-----~~~~~LSgGq~qrl~laral~~~~~p~llLlDE 115 (176)
T cd03238 68 ---------------------------LQFLIDVGLGYLTLG-----QKLSTLSGGELQRVKLASELFSEPPGTLFILDE 115 (176)
T ss_pred ---------------------------HHHHHHcCCCccccC-----CCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeC
Confidence 236777888642 44 45679999999999999999999 99999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 204 PTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 204 PtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
||+|||+.++..+.+.|+++++.|+|||+++|++. .+ ..+|++++| .+|...+.|
T Consensus 116 Pt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~-~~-~~~d~i~~l-~~g~~~~~~ 170 (176)
T cd03238 116 PSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLD-VL-SSADWIIDF-GPGSGKSGG 170 (176)
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEE-CCCCCCCCc
Confidence 99999999999999999999878999999999986 34 679999999 665544333
No 345
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.7e-33 Score=321.17 Aligned_cols=193 Identities=27% Similarity=0.433 Sum_probs=159.3
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCC-CCCCC
Q 046786 47 EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNN-VFYPH 125 (604)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~-~l~~~ 125 (604)
+++.+|+|+|++|++|++++|+||||||||||||+|+|.++ |++|+|.+ |.++ .+||++|+. .+++.
T Consensus 330 ~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~-----p~~G~i~~-~~~~------~i~y~~q~~~~l~~~ 397 (635)
T PRK11147 330 DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ-----ADSGRIHC-GTKL------EVAYFDQHRAELDPE 397 (635)
T ss_pred CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEE-CCCc------EEEEEeCcccccCCC
Confidence 34679999999999999999999999999999999999875 67999998 4322 599999985 58899
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 046786 126 LTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLA-RCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEP 204 (604)
Q Consensus 126 lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEP 204 (604)
+||.|++.+..... ... .....+.++++.+++. +..+ +.++.|||||||||+||++|+.+|++||||||
T Consensus 398 ~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~-----~~~~~LSgGekqRl~la~al~~~p~lLlLDEP 467 (635)
T PRK11147 398 KTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAM-----TPVKALSGGERNRLLLARLFLKPSNLLILDEP 467 (635)
T ss_pred CCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHh-----ChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99999998753210 111 1134578899999996 3455 34569999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEec-CCeEE-EecChhhH
Q 046786 205 TSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSS-DGSSL-YFGKGEDV 266 (604)
Q Consensus 205 tsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~-~G~~v-~~G~~~~~ 266 (604)
|+|||+.+...+.+.|+++ +.|||++|||.. .+..++|+++++ . +|++. |.|+.++-
T Consensus 468 t~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l-~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 468 TNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIF-EGNGKIGRYVGGYHDA 526 (635)
T ss_pred CCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEE-eCCCeEEEccCCHHHH
Confidence 9999999999999999887 359999999964 677899999999 6 78876 55665543
No 346
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.2e-34 Score=257.28 Aligned_cols=181 Identities=30% Similarity=0.517 Sum_probs=159.4
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--hccccEEEEecCCCCCC
Q 046786 47 EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--EVKRRTGFVAQNNVFYP 124 (604)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--~~~~~i~yv~Q~~~l~~ 124 (604)
++..+|-|+|++|.+||++.|||||||||||||..+.|.+.+.- ..+|++.+|+++++. ..+|++|.++||+.+||
T Consensus 13 ~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F--~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFp 90 (213)
T COG4136 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQF--SCTGELWLNEQRLDMLPAAQRQIGILFQDALLFP 90 (213)
T ss_pred CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCc--ceeeEEEECCeeccccchhhhheeeeeccccccc
Confidence 56779999999999999999999999999999999999876321 248999999999864 56789999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 046786 125 HLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEP 204 (604)
Q Consensus 125 ~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEP 204 (604)
+++|.+|+.|+ +|...+-+.+++.++..|++.||....+ +.+.+||||||-||++-|+|+..|+.++||||
T Consensus 91 hlsVg~Nl~fA----lp~~~KG~aRr~~a~aAL~~~gL~g~f~-----~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEP 161 (213)
T COG4136 91 HLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAFH-----QDPATLSGGQRARVALLRALLAQPKALLLDEP 161 (213)
T ss_pred ccccccceEEe----cCcccccHHHHhhHHHHHHHhccchhhh-----cChhhcCcchHHHHHHHHHHHhCcceeeeCCc
Confidence 99999999986 3555555667778899999999998777 55779999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCc
Q 046786 205 TSGLDSTMAKKILVSLSKLA-EGGRTILMTIHQPA 238 (604)
Q Consensus 205 tsgLD~~~~~~i~~~l~~la-~~g~tvi~~~Hq~~ 238 (604)
+|.||..-+.++.+..-+-. ..|..+|.+|||..
T Consensus 162 FS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~ 196 (213)
T COG4136 162 FSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196 (213)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence 99999999999998876554 46999999999964
No 347
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=2e-33 Score=261.72 Aligned_cols=132 Identities=36% Similarity=0.619 Sum_probs=122.4
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCH
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTV 128 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv 128 (604)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ |++|+|.++|+ +.++|++|
T Consensus 13 ~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~~~-------~~i~~~~~---------- 70 (144)
T cd03221 13 KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE-----PDEGIVTWGST-------VKIGYFEQ---------- 70 (144)
T ss_pred ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCceEEEECCe-------EEEEEEcc----------
Confidence 469999999999999999999999999999999999985 57999999984 46999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 046786 129 AETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGL 208 (604)
Q Consensus 129 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgL 208 (604)
||+||+||++||++|+.+|+++++||||+||
T Consensus 71 -------------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~L 101 (144)
T cd03221 71 -------------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHL 101 (144)
T ss_pred -------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 9999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCe
Q 046786 209 DSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGS 256 (604)
Q Consensus 209 D~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~ 256 (604)
|+.++..+.+.|+++ ++|||+++|++. .+...+|++++| ++|+
T Consensus 102 D~~~~~~l~~~l~~~---~~til~~th~~~-~~~~~~d~v~~l-~~g~ 144 (144)
T cd03221 102 DLESIEALEEALKEY---PGTVILVSHDRY-FLDQVATKIIEL-EDGK 144 (144)
T ss_pred CHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEE-eCCC
Confidence 999999999999987 479999999975 677889999999 7775
No 348
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=4.8e-33 Score=318.79 Aligned_cols=205 Identities=20% Similarity=0.358 Sum_probs=161.3
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhcccc
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRR 112 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 112 (604)
++..|+.+.+. +++.+|+|+|+++++|++++|+||||||||||||+|+|+++ |++|+|.+++ +..
T Consensus 509 L~~~~ls~~y~---~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~-----p~~G~I~~~~-------~~~ 573 (718)
T PLN03073 509 ISFSDASFGYP---GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ-----PSSGTVFRSA-------KVR 573 (718)
T ss_pred EEEEeeEEEeC---CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCceEEECC-------cee
Confidence 44445444331 23469999999999999999999999999999999999985 5799999875 246
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCcCHHHHHHHHHHHH
Q 046786 113 TGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLAR-CRNSIIGGRLVRGLSGGERKRISIGQE 191 (604)
Q Consensus 113 i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRvsia~~ 191 (604)
+||++|+. .+.+++.++..+......+. .. .+++.++++.+|+.+ ..+ +.++.|||||||||+||++
T Consensus 574 igyv~Q~~--~~~l~~~~~~~~~~~~~~~~-~~----~~~i~~~L~~~gl~~~~~~-----~~~~~LSgGqkqRvaLAra 641 (718)
T PLN03073 574 MAVFSQHH--VDGLDLSSNPLLYMMRCFPG-VP----EQKLRAHLGSFGVTGNLAL-----QPMYTLSGGQKSRVAFAKI 641 (718)
T ss_pred EEEEeccc--cccCCcchhHHHHHHHhcCC-CC----HHHHHHHHHHCCCChHHhc-----CCccccCHHHHHHHHHHHH
Confidence 99999985 34556666643322111111 11 245788999999974 444 4567999999999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEE-EecChhhHHHH
Q 046786 192 LLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSL-YFGKGEDVINY 269 (604)
Q Consensus 192 L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v-~~G~~~~~~~~ 269 (604)
|+.+|++|+|||||+|||+.+...+++.|++. .| |||++|||+. .+...+|++++| .+|+++ +.|+.++..++
T Consensus 642 L~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~-~i~~~~drv~~l-~~G~i~~~~g~~~~~~~~ 715 (718)
T PLN03073 642 TFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDEH-LISGSVDELWVV-SEGKVTPFHGTFHDYKKT 715 (718)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCHH-HHHHhCCEEEEE-ECCEEEEeCCCHHHHHHH
Confidence 99999999999999999999999998888775 34 9999999975 677889999999 899998 78877665443
No 349
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1.3e-33 Score=322.82 Aligned_cols=200 Identities=23% Similarity=0.359 Sum_probs=157.3
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhcccc
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRR 112 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 112 (604)
++..|+++... +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ +++|+|.+++ ++.
T Consensus 452 i~~~nv~~~~~---~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~-----~~~G~i~~~~-------~~~ 516 (659)
T TIGR00954 452 IKFENIPLVTP---NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP-----VYGGRLTKPA-------KGK 516 (659)
T ss_pred EEEEeeEEECC---CCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEeecC-------CCc
Confidence 44555544321 23569999999999999999999999999999999999985 5689998864 467
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc----CccCCCcCHHHHHHHHH
Q 046786 113 TGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIG----GRLVRGLSGGERKRISI 188 (604)
Q Consensus 113 i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg----~~~~~~LSgGerqRvsi 188 (604)
++||+|++.+++. |++||+.++....... ......++++++++.+|+.+..+...| ......||||||||++|
T Consensus 517 i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~i 593 (659)
T TIGR00954 517 LFYVPQRPYMTLG-TLRDQIIYPDSSEDMK--RRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAM 593 (659)
T ss_pred EEEECCCCCCCCc-CHHHHHhcCCChhhhh--ccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHH
Confidence 9999999998887 9999998753211000 000112457788999999765543221 12356899999999999
Q ss_pred HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCC
Q 046786 189 GQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDG 255 (604)
Q Consensus 189 a~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G 255 (604)
||+|+++|++++|||||+|||+.+...+.+.+++ .|+|+|+++|+++ ....+|++++|..+|
T Consensus 594 ARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~--~~~~~d~il~l~~~g 655 (659)
T TIGR00954 594 ARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKS--LWKYHEYLLYMDGRG 655 (659)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchH--HHHhCCEEEEEeCCC
Confidence 9999999999999999999999999999998876 3899999999986 357899999994344
No 350
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-33 Score=318.43 Aligned_cols=207 Identities=24% Similarity=0.368 Sum_probs=159.0
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhcccc
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRR 112 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 112 (604)
+...|+++.+ +++.+|+||||+|++|+++||+||||||||||||+|+|..+ |++|+|.++|.. .
T Consensus 2 i~i~nls~~~----g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~-----pd~G~I~~~~~~-------~ 65 (638)
T PRK10636 2 IVFSSLQIRR----GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS-----ADGGSYTFPGNW-------Q 65 (638)
T ss_pred EEEEEEEEEe----CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEecCCC-------E
Confidence 3445655443 45679999999999999999999999999999999999875 679999998742 3
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHH-----------------------HhcC-CCCCCHHHHHHHHHHHHHHcCCC-cccc
Q 046786 113 TGFVAQNNVFYPHLTVAETLVFTA-----------------------LLRL-PNSLKREEKVLHAEAVINQLGLA-RCRN 167 (604)
Q Consensus 113 i~yv~Q~~~l~~~lTv~e~l~f~~-----------------------~~~~-~~~~~~~~~~~~v~~~l~~lgL~-~~~~ 167 (604)
++|++|+.... ..|+.+.+.-.. .+.. .......+...+++++++.+|+. +..+
T Consensus 66 i~~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~ 144 (638)
T PRK10636 66 LAWVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLE 144 (638)
T ss_pred EEEEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhc
Confidence 88998865333 246555443110 0000 00000112235788999999997 4555
Q ss_pred ccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCe
Q 046786 168 SIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNK 247 (604)
Q Consensus 168 ~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~ 247 (604)
+.+..|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||+++||+. .+...+|+
T Consensus 145 -----~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~-~l~~~~d~ 215 (638)
T PRK10636 145 -----RPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRD-FLDPIVDK 215 (638)
T ss_pred -----CchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHHhcCE
Confidence 445699999999999999999999999999999999999999999999876 469999999975 67789999
Q ss_pred EEEEecCCeEE-EecChhhH
Q 046786 248 ILLLSSDGSSL-YFGKGEDV 266 (604)
Q Consensus 248 v~ll~~~G~~v-~~G~~~~~ 266 (604)
+++| ++|++. |.|+.+..
T Consensus 216 i~~L-~~G~i~~~~g~~~~~ 234 (638)
T PRK10636 216 IIHI-EQQSLFEYTGNYSSF 234 (638)
T ss_pred EEEE-eCCEEEEecCCHHHH
Confidence 9999 899986 66765533
No 351
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.5e-33 Score=343.40 Aligned_cols=205 Identities=24% Similarity=0.370 Sum_probs=165.7
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhcccc
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRR 112 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 112 (604)
++..|.++.... ..++.+|+|+|+++++||.++|+||||||||||+++|.|.++ |++|.+. ..++.
T Consensus 615 I~~~~vsF~y~~-~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~-----~~~G~i~--------~~~~~ 680 (1495)
T PLN03232 615 ISIKNGYFSWDS-KTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELS-----HAETSSV--------VIRGS 680 (1495)
T ss_pred EEEEeeEEEcCC-CCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCc-----ccCCCEE--------EecCc
Confidence 445555555432 123569999999999999999999999999999999999986 4577653 24678
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCCCcCHHHHHH
Q 046786 113 TGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGL-------ARCRNSIIGGRLVRGLSGGERKR 185 (604)
Q Consensus 113 i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqR 185 (604)
++||+|++.++.. |++||+.|+.. .++ ++.+++++..+| .+-.+|.||++ ...||||||||
T Consensus 681 Iayv~Q~p~Lf~g-TIreNI~fg~~------~~~----e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~-G~~LSGGQkQR 748 (1495)
T PLN03232 681 VAYVPQVSWIFNA-TVRENILFGSD------FES----ERYWRAIDVTALQHDLDLLPGRDLTEIGER-GVNISGGQKQR 748 (1495)
T ss_pred EEEEcCccccccc-cHHHHhhcCCc------cCH----HHHHHHHHHhCCHHHHHhCCCCCCceecCC-CcccCHHHHHH
Confidence 9999999999975 99999998631 222 234445555444 44557899854 66899999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChh
Q 046786 186 ISIGQELLINPSLLFLDEPTSGLDSTMAKKILVS-LSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGE 264 (604)
Q Consensus 186 vsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~-l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~ 264 (604)
++||||+.++|+|++||||||+||+.++..+++. ++.. .+|+|+|++||+++ ....+|++++| ++|+++..|+.+
T Consensus 749 IaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~--~l~~aD~Ii~L-~~G~i~~~Gt~~ 824 (1495)
T PLN03232 749 VSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLH--FLPLMDRIILV-SEGMIKEEGTFA 824 (1495)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChh--hHHhCCEEEEE-eCCEEEEecCHH
Confidence 9999999999999999999999999999988765 5544 35899999999985 46779999999 899999999988
Q ss_pred hHH
Q 046786 265 DVI 267 (604)
Q Consensus 265 ~~~ 267 (604)
++.
T Consensus 825 eL~ 827 (1495)
T PLN03232 825 ELS 827 (1495)
T ss_pred HHH
Confidence 875
No 352
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=5.1e-33 Score=342.42 Aligned_cols=204 Identities=23% Similarity=0.387 Sum_probs=167.0
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccc-cEEEECCEeCChhccc
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQ-GHITYNGKQFSAEVKR 111 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~-G~I~~~G~~~~~~~~~ 111 (604)
++..|.++.... ..++.+|+|+|+++++||.++|+||||||||||+++|.|.++ |++ |+|.+ ++
T Consensus 615 I~~~nvsf~y~~-~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~-----~~~GG~I~l---------~~ 679 (1622)
T PLN03130 615 ISIKNGYFSWDS-KAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP-----PRSDASVVI---------RG 679 (1622)
T ss_pred eEEEeeEEEccC-CCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc-----cCCCceEEE---------cC
Confidence 455565555432 123569999999999999999999999999999999999986 568 89974 45
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCCCcCHHHHH
Q 046786 112 RTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLA-------RCRNSIIGGRLVRGLSGGERK 184 (604)
Q Consensus 112 ~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerq 184 (604)
.++||+|++.++.. |++||+.|+.. .+ +++.+++++..+|. +-.+|.||.+ ...|||||||
T Consensus 680 ~Iayv~Q~p~Lfng-TIreNI~fg~~------~d----~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~-G~~LSGGQKQ 747 (1622)
T PLN03130 680 TVAYVPQVSWIFNA-TVRDNILFGSP------FD----PERYERAIDVTALQHDLDLLPGGDLTEIGER-GVNISGGQKQ 747 (1622)
T ss_pred eEEEEcCccccCCC-CHHHHHhCCCc------cc----HHHHHHHHHHhCcHHHHHhCCCcccccccCC-CCCCCHHHHH
Confidence 79999999999975 99999998632 12 23455556655543 4458889854 6689999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecCh
Q 046786 185 RISIGQELLINPSLLFLDEPTSGLDSTMAKKILV-SLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKG 263 (604)
Q Consensus 185 Rvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~-~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~ 263 (604)
|++||||+.++|+|++||||||+||+.++..+++ .++.+. +|+|+|++||+++ ....+|++++| ++|+++..|+.
T Consensus 748 RIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~--~l~~aD~Ii~L-~~G~i~e~Gt~ 823 (1622)
T PLN03130 748 RVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLH--FLSQVDRIILV-HEGMIKEEGTY 823 (1622)
T ss_pred HHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHh--HHHhCCEEEEE-eCCEEEEeCCH
Confidence 9999999999999999999999999999998865 566554 5899999999984 46789999999 89999999999
Q ss_pred hhHH
Q 046786 264 EDVI 267 (604)
Q Consensus 264 ~~~~ 267 (604)
+++.
T Consensus 824 ~eL~ 827 (1622)
T PLN03130 824 EELS 827 (1622)
T ss_pred HHHH
Confidence 8875
No 353
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.8e-32 Score=312.85 Aligned_cols=206 Identities=23% Similarity=0.329 Sum_probs=158.5
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccc
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKR 111 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~ 111 (604)
+++..|++..+ +++.+|+||||++++|++++|+||||||||||||+|+|..+ |++|+|.++|..
T Consensus 3 ~l~i~~ls~~~----~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~-----p~~G~I~~~~~~------- 66 (635)
T PRK11147 3 LISIHGAWLSF----SDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL-----LDDGRIIYEQDL------- 66 (635)
T ss_pred EEEEeeEEEEe----CCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCeEEEeCCCC-------
Confidence 35555655544 34679999999999999999999999999999999999875 679999998731
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHH------------------------------Hhc--CCCCCCHHHHHHHHHHHHHH
Q 046786 112 RTGFVAQNNVFYPHLTVAETLVFTA------------------------------LLR--LPNSLKREEKVLHAEAVINQ 159 (604)
Q Consensus 112 ~i~yv~Q~~~l~~~lTv~e~l~f~~------------------------------~~~--~~~~~~~~~~~~~v~~~l~~ 159 (604)
.++|++|.+......+|.+++..+. .+. .. .....+...+++++++.
T Consensus 67 ~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~l~~ 145 (635)
T PRK11147 67 IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLD-HHNLWQLENRINEVLAQ 145 (635)
T ss_pred EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH-hcCcccHHHHHHHHHHh
Confidence 2677777654333345665542110 000 00 00001123568899999
Q ss_pred cCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q 046786 160 LGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPAS 239 (604)
Q Consensus 160 lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~ 239 (604)
+|+.. + +.+.+|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++. .|||++|||+.
T Consensus 146 lgl~~--~-----~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~tvlivsHd~~- 214 (635)
T PRK11147 146 LGLDP--D-----AALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GSIIFISHDRS- 214 (635)
T ss_pred CCCCC--C-----CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CEEEEEeCCHH-
Confidence 99963 3 4567999999999999999999999999999999999999999999999883 59999999975
Q ss_pred HHHhhcCeEEEEecCCeEE-EecChhhH
Q 046786 240 SLFYMFNKILLLSSDGSSL-YFGKGEDV 266 (604)
Q Consensus 240 ~i~~~~d~v~ll~~~G~~v-~~G~~~~~ 266 (604)
.+...+|+++.| ++|+++ |.|+.++.
T Consensus 215 ~l~~~~d~i~~L-~~G~i~~~~g~~~~~ 241 (635)
T PRK11147 215 FIRNMATRIVDL-DRGKLVSYPGNYDQY 241 (635)
T ss_pred HHHHhcCeEEEE-ECCEEEEecCCHHHH
Confidence 677889999999 899997 56776543
No 354
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=7e-33 Score=311.99 Aligned_cols=181 Identities=29% Similarity=0.424 Sum_probs=152.9
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEE-----------ECCEeCChh---c---cc
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHIT-----------YNGKQFSAE---V---KR 111 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~-----------~~G~~~~~~---~---~~ 111 (604)
..+|++++ .+++||+++|+||||||||||||+|+|.++ |++|+|. ++|+++... . +.
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~-----p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~ 160 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI-----PNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEI 160 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc-----CCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCc
Confidence 46999999 999999999999999999999999999885 6799997 999887431 1 23
Q ss_pred cEEEEecCCCCCCC---CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHH
Q 046786 112 RTGFVAQNNVFYPH---LTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISI 188 (604)
Q Consensus 112 ~i~yv~Q~~~l~~~---lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsi 188 (604)
.+++.+|.....|. .||+|++... +..++++++++.+||.+..|+ .+.+|||||||||+|
T Consensus 161 ~~~~~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~-----~~~~LSgGe~qrv~i 223 (590)
T PRK13409 161 KVVHKPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDR-----DISELSGGELQRVAI 223 (590)
T ss_pred ceeecccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHHH
Confidence 46666765444433 3999998631 123468899999999887774 456999999999999
Q ss_pred HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCC
Q 046786 189 GQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDG 255 (604)
Q Consensus 189 a~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G 255 (604)
|++|+.+|++|+|||||++||+.++..+.+.|+++++ |+|||+++|++. .+..++|++++| +++
T Consensus 224 a~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~-~l~~~~D~v~vl-~~~ 287 (590)
T PRK13409 224 AAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLA-VLDYLADNVHIA-YGE 287 (590)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEE-eCC
Confidence 9999999999999999999999999999999999998 999999999976 678899999999 653
No 355
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-32 Score=257.40 Aligned_cols=142 Identities=44% Similarity=0.790 Sum_probs=129.5
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----hccccEEEEecCCCCCC
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----EVKRRTGFVAQNNVFYP 124 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~ 124 (604)
+.+++++|+++++|++++|+||||||||||+++|+|.++ +++|+|.++|.++.. ..++.++|++|
T Consensus 12 ~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~-----~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q------ 80 (157)
T cd00267 12 RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK-----PTSGEILIDGKDIAKLPLEELRRRIGYVPQ------ 80 (157)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCEEcccCCHHHHHhceEEEee------
Confidence 469999999999999999999999999999999999985 569999999988643 34567999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 046786 125 HLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEP 204 (604)
Q Consensus 125 ~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEP 204 (604)
|||||+||++||++|+.+|++++||||
T Consensus 81 -----------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp 107 (157)
T cd00267 81 -----------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEP 107 (157)
T ss_pred -----------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCe
Q 046786 205 TSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGS 256 (604)
Q Consensus 205 tsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~ 256 (604)
|+|||..++..+.+.|+++++.++|+++++|++. .+...+|+++++ ++|+
T Consensus 108 ~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l-~~g~ 157 (157)
T cd00267 108 TSGLDPASRERLLELLRELAEEGRTVIIVTHDPE-LAELAADRVIVL-KDGK 157 (157)
T ss_pred CcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEE-eCcC
Confidence 9999999999999999999877899999999975 566778999999 6764
No 356
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.6e-32 Score=253.70 Aligned_cols=206 Identities=24% Similarity=0.406 Sum_probs=181.8
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh---hc-cccEEEEecCCC--
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---EV-KRRTGFVAQNNV-- 121 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---~~-~~~i~yv~Q~~~-- 121 (604)
...+++.|||++++|+.+||+|.||||||||.|+|+|..+ |++|+|++||+++.- .. .+.|-+++||+.
T Consensus 25 ~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~-----PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts 99 (267)
T COG4167 25 TVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE-----PTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTS 99 (267)
T ss_pred hhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC-----CCCceEEECCccccccchHhhhhheeeeecCCccc
Confidence 3468999999999999999999999999999999999986 789999999999842 33 357999999974
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEE
Q 046786 122 FYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLAR-CRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLF 200 (604)
Q Consensus 122 l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~ill 200 (604)
+.|.+.+.+-|....++ ...++.+.+.+++.+.|+.+||-. .+| -++.-||-||||||++||||+.+|+|++
T Consensus 100 ~NPRl~iGqiLd~PL~l--~T~~~~~~R~~~i~~TL~~VGL~Pdhan-----~~~~~la~~QKQRVaLARALIL~P~iII 172 (267)
T COG4167 100 LNPRLRIGQILDFPLRL--NTDLEPEQRRKQIFETLRMVGLLPDHAN-----YYPHMLAPGQKQRVALARALILRPKIII 172 (267)
T ss_pred cChhhhhhhHhcchhhh--cccCChHHHHHHHHHHHHHhccCccccc-----cchhhcCchhHHHHHHHHHHhcCCcEEE
Confidence 78888888888877544 446778888899999999999964 343 4577999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 201 LDEPTSGLDSTMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 201 LDEPtsgLD~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
.||...+||...+.+++++.-++.+ .|.+-|.++.+.. .+..+.|++++| ++|+++..|.+.++.
T Consensus 173 aDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG-~iKHi~D~viVM-~EG~vvE~G~t~~v~ 238 (267)
T COG4167 173 ADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIG-MIKHISDQVLVM-HEGEVVERGSTADVL 238 (267)
T ss_pred ehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhh-HhhhhcccEEEE-ecCceeecCChhhhh
Confidence 9999999999999999999999986 4999999999975 688999999999 999999999988774
No 357
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-33 Score=290.66 Aligned_cols=206 Identities=31% Similarity=0.513 Sum_probs=174.6
Q ss_pred ccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----hccccEEEEecCCC
Q 046786 46 DEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----EVKRRTGFVAQNNV 121 (604)
Q Consensus 46 ~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~ 121 (604)
.+.+++|+++|+.+++|+.+||+||||+||||++++|-..+. +++|.|.++|+++.. ..|+.||.||||..
T Consensus 273 ~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD-----~~sG~I~id~qdir~vtq~slR~aIg~VPQDtv 347 (497)
T COG5265 273 DPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD-----VNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTV 347 (497)
T ss_pred cccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC-----CcCceEEEcchhHHHhHHHHHHHHhCcCcccce
Confidence 356889999999999999999999999999999999999885 569999999999853 57889999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCC
Q 046786 122 FYPHLTVAETLVFTALLRLPNSLKREEKVL-----HAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINP 196 (604)
Q Consensus 122 l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p 196 (604)
||.. |...|+.|+. ...+.++..+ .+.+.++ .+.+-.||.||.+ .-.|||||||||+|||+++++|
T Consensus 348 LFND-ti~yni~ygr-----~~at~eev~aaa~~aqi~~fi~--~lP~gy~t~Vger-glklSggekqrvaiar~ilk~p 418 (497)
T COG5265 348 LFND-TIAYNIKYGR-----PDATAEEVGAAAEAAQIHDFIQ--SLPEGYDTGVGER-GLKLSGGEKQRVAIARTILKNP 418 (497)
T ss_pred ehhh-hHHHHHhccC-----ccccHHHHHHHHHHhhhhHHHH--hCchhhhcccchh-eeeccCchHHHHHHHHHHhcCC
Confidence 9865 9999998863 2234444332 2233333 3577789999954 4469999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHHHH
Q 046786 197 SLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVINY 269 (604)
Q Consensus 197 ~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~~~ 269 (604)
+||++||.||.||..+.+++...|++.+ .|+|.+++.|..+. +. -+|.+++| ++|+++..|.-++++..
T Consensus 419 ~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlst-i~-~adeiivl-~~g~i~erg~h~~ll~~ 487 (497)
T COG5265 419 PILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLST-II-DADEIIVL-DNGRIVERGTHEELLAA 487 (497)
T ss_pred CEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh-cc-CCceEEEe-eCCEEEecCcHHHHHHc
Confidence 9999999999999999999999999998 58999999999873 43 48999999 89999999998887653
No 358
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-32 Score=257.29 Aligned_cols=178 Identities=28% Similarity=0.422 Sum_probs=157.5
Q ss_pred ccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh---hccccEEEEecCCCC
Q 046786 46 DEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---EVKRRTGFVAQNNVF 122 (604)
Q Consensus 46 ~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---~~~~~i~yv~Q~~~l 122 (604)
.+++.++.++||++.+||++-|.||||||||||||+|+|+.+ |++|+|.++|.+++. ...+.+-|+--.+.+
T Consensus 12 R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~-----p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~gi 86 (209)
T COG4133 12 RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR-----PDAGEVYWQGEPIQNVRESYHQALLYLGHQPGI 86 (209)
T ss_pred cCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC-----CCCCeEEecCCCCccchhhHHHHHHHhhccccc
Confidence 356789999999999999999999999999999999999986 679999999998864 245678888888889
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEe
Q 046786 123 YPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLD 202 (604)
Q Consensus 123 ~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLD 202 (604)
-+.|||.|||.|-...... .....+.+.++.+||....|.+++ .||-||||||+|||-+++.+++.|||
T Consensus 87 K~eLTa~ENL~F~~~~~~~------~~~~~i~~Al~~vgL~g~~dlp~~-----~LSAGQqRRvAlArL~ls~~pLWiLD 155 (209)
T COG4133 87 KTELTALENLHFWQRFHGS------GNAATIWEALAQVGLAGLEDLPVG-----QLSAGQQRRVALARLWLSPAPLWILD 155 (209)
T ss_pred cchhhHHHHHHHHHHHhCC------CchhhHHHHHHHcCcccccccchh-----hcchhHHHHHHHHHHHcCCCCceeec
Confidence 9999999999998765432 112457889999999998886655 99999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q 046786 203 EPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPAS 239 (604)
Q Consensus 203 EPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~ 239 (604)
||+++||......+-..+..=+.+|-.||.+||||..
T Consensus 156 EP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 156 EPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred CcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 9999999999999999998888889999999999864
No 359
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.5e-32 Score=335.39 Aligned_cols=193 Identities=29% Similarity=0.475 Sum_probs=157.4
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCH
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTV 128 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv 128 (604)
+.+|+|+|+++++||+++|+|||||||||||++|+|..+ |++|+|.++| .++||+|++.+++. ||
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~-----~~~G~i~~~g---------~iayv~Q~~~l~~~-Ti 503 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE-----PSEGKIKHSG---------RISFSPQTSWIMPG-TI 503 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECC---------EEEEEeCCCccCCc-cH
Confidence 569999999999999999999999999999999999986 5799999998 39999999999875 99
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHH--HHHHHHHHcCC-CccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 046786 129 AETLVFTALLRLPNSLKREEKVL--HAEAVINQLGL-ARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPT 205 (604)
Q Consensus 129 ~e~l~f~~~~~~~~~~~~~~~~~--~v~~~l~~lgL-~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPt 205 (604)
+||+.|+... ..+..++ +...+.+.+.. .+..+|.+|. ....||||||||++||||++.+|++++|||||
T Consensus 504 ~eNI~~g~~~------~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~-~g~~LSgGqkqRi~lARAl~~~~~illLDep~ 576 (1490)
T TIGR01271 504 KDNIIFGLSY------DEYRYTSVIKACQLEEDIALFPEKDKTVLGE-GGITLSGGQRARISLARAVYKDADLYLLDSPF 576 (1490)
T ss_pred HHHHHhcccc------chHHHHHHHHHHhHHHHHHhccccccccccC-cCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 9999987421 1111111 11112222221 2233567774 47899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 206 SGLDSTMAKKILVS-LSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 206 sgLD~~~~~~i~~~-l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
+|||+.++..+.+. ++++. +|+|+|++||++.. + ..+|++++| ++|+++..|+.+++.
T Consensus 577 saLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~~-~-~~ad~ii~l-~~g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 577 THLDVVTEKEIFESCLCKLM-SNKTRILVTSKLEH-L-KKADKILLL-HEGVCYFYGTFSELQ 635 (1490)
T ss_pred ccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChHH-H-HhCCEEEEE-ECCEEEEEcCHHHHH
Confidence 99999999999984 67765 48999999999863 4 569999999 899999999988875
No 360
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=3.2e-32 Score=335.40 Aligned_cols=208 Identities=23% Similarity=0.397 Sum_probs=165.4
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhcccc
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRR 112 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 112 (604)
++..|+++.... .++.+|+|+|+++++||+++|+|||||||||||++|+|.++ |++|+|.++| .
T Consensus 637 i~~~~~~~~~~~--~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~-----~~~G~i~~~g---------~ 700 (1522)
T TIGR00957 637 ITVHNATFTWAR--DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD-----KVEGHVHMKG---------S 700 (1522)
T ss_pred EEEEEeEEEcCC--CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc-----cCCcEEEECC---------E
Confidence 455555554421 23569999999999999999999999999999999999985 5799999987 4
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHH--HHHHHHHcCC-CccccccccCccCCCcCHHHHHHHHHH
Q 046786 113 TGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLH--AEAVINQLGL-ARCRNSIIGGRLVRGLSGGERKRISIG 189 (604)
Q Consensus 113 i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~--v~~~l~~lgL-~~~~~~~vg~~~~~~LSgGerqRvsia 189 (604)
++||+|++.+++ .|++||+.|+.. ..++..++. +..+.+.++. .+..+|.+| +....||||||||++||
T Consensus 701 i~yv~Q~~~l~~-~Ti~eNI~~g~~------~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig-~~g~~LSGGQkqRiaLA 772 (1522)
T TIGR00957 701 VAYVPQQAWIQN-DSLRENILFGKA------LNEKYYQQVLEACALLPDLEILPSGDRTEIG-EKGVNLSGGQKQRVSLA 772 (1522)
T ss_pred EEEEcCCccccC-CcHHHHhhcCCc------cCHHHHHHHHHHhCCHHHHHhcCCCCCceec-CCCCCCCHHHHHHHHHH
Confidence 999999998875 699999998632 122221111 1112333333 234467787 45779999999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH--hCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 190 QELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLA--EGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 190 ~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la--~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
||+..+|++++||||||+||+.++..+.+.+.+.. .+|+|+|++||++. . ...+|++++| ++|+++..|+.+++.
T Consensus 773 RAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~-~-l~~~D~ii~l-~~G~i~~~g~~~~l~ 849 (1522)
T TIGR00957 773 RAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGIS-Y-LPQVDVIIVM-SGGKISEMGSYQELL 849 (1522)
T ss_pred HHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChh-h-hhhCCEEEEe-cCCeEEeeCCHHHHH
Confidence 99999999999999999999999999999997642 35899999999985 3 4559999999 899999999998875
No 361
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.98 E-value=5.7e-32 Score=249.59 Aligned_cols=206 Identities=30% Similarity=0.475 Sum_probs=163.0
Q ss_pred cccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCE---eCC-----h-h----ccc
Q 046786 45 SDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGK---QFS-----A-E----VKR 111 (604)
Q Consensus 45 ~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~---~~~-----~-~----~~~ 111 (604)
.++...--+||||.+.|||+++|+|+|||||||||+||++++. |+.|+|.|.-. +.+ + + +|.
T Consensus 15 ~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~-----p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RT 89 (258)
T COG4107 15 LYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT-----PDAGTVTYRMRDGQPRDLYTMSEAERRRLLRT 89 (258)
T ss_pred hhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC-----CCCCeEEEEcCCCCchhHhhhchHHHHHHhhh
Confidence 3455667899999999999999999999999999999999985 67999999653 221 1 1 244
Q ss_pred cEEEEecCCC--CCCCC----CHHHHHHH-HHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHH
Q 046786 112 RTGFVAQNNV--FYPHL----TVAETLVF-TALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERK 184 (604)
Q Consensus 112 ~i~yv~Q~~~--l~~~l----Tv~e~l~f-~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 184 (604)
.-|+|.|++. +-... .+.|-++- +++ .-...++.+.++|+++.+...+ + +..++.+||||+|
T Consensus 90 eWG~VhQnP~DGLRm~VSAG~NiGERlma~G~R-------HYG~iR~~a~~WL~~VEI~~~R---i-DD~PrtFSGGMqQ 158 (258)
T COG4107 90 EWGFVHQNPRDGLRMQVSAGGNIGERLMAIGAR-------HYGNIRAEAQDWLEEVEIDLDR---I-DDLPRTFSGGMQQ 158 (258)
T ss_pred ccceeecCccccceeeeccCCccchhHHhhhhh-------hhhhHHHHHHHHHHhcccCccc---c-cCcccccchHHHH
Confidence 6899999864 32222 33343321 111 1122345577899999886532 2 3678999999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecCh
Q 046786 185 RISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKG 263 (604)
Q Consensus 185 Rvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~ 263 (604)
|+.|||.|++.|+++|+||||.|||.+-+..++++++.+..+ |.+++++|||.. ..--++|+.++| ++|+++..|-.
T Consensus 159 RLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~-VarLla~rlmvm-k~g~vve~GLT 236 (258)
T COG4107 159 RLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLADRLMVM-KQGQVVESGLT 236 (258)
T ss_pred HHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhH-HHHHhhhcceee-cCCCEeccccc
Confidence 999999999999999999999999999999999999999865 999999999975 566678999999 99999999988
Q ss_pred hhHHH
Q 046786 264 EDVIN 268 (604)
Q Consensus 264 ~~~~~ 268 (604)
+.+++
T Consensus 237 DrvLD 241 (258)
T COG4107 237 DRVLD 241 (258)
T ss_pred ccccc
Confidence 77653
No 362
>PTZ00243 ABC transporter; Provisional
Probab=99.97 E-value=2.3e-31 Score=327.30 Aligned_cols=191 Identities=28% Similarity=0.445 Sum_probs=153.7
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLT 127 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lT 127 (604)
++.+|+|+|+++++||+++|+|||||||||||++|+|.++ |++|+|.++ +.+||++|++.+++ .|
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~-----~~~G~i~~~---------~~i~yv~Q~~~l~~-~T 736 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE-----ISEGRVWAE---------RSIAYVPQQAWIMN-AT 736 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEEC---------CeEEEEeCCCccCC-Cc
Confidence 4569999999999999999999999999999999999985 578999863 46999999998875 69
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHH-----HHHHHHHHHc--CCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEE
Q 046786 128 VAETLVFTALLRLPNSLKREEKV-----LHAEAVINQL--GLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLF 200 (604)
Q Consensus 128 v~e~l~f~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~ill 200 (604)
|+||+.|+.. ...+... ...++.++.+ |+ +|.+| +....||||||||++|||||+.+|++++
T Consensus 737 v~enI~~~~~------~~~~~~~~~~~~~~l~~~l~~l~~g~----~t~i~-~~g~~LSGGQkqRvaLARAl~~~p~ill 805 (1560)
T PTZ00243 737 VRGNILFFDE------EDAARLADAVRVSQLEADLAQLGGGL----ETEIG-EKGVNLSGGQKARVSLARAVYANRDVYL 805 (1560)
T ss_pred HHHHHHcCCh------hhHHHHHHHHHHhhhHHHHHHhhccc----hHHhc-CCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999988521 1111111 1223344444 33 34555 4577999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 201 LDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 201 LDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
|||||++||+.++..+++.+.....+|+|+|++||++.. ...+|++++| ++|++++.|+.+++.
T Consensus 806 LDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~--~~~ad~ii~l-~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 806 LDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHV--VPRADYVVAL-GDGRVEFSGSSADFM 869 (1560)
T ss_pred EcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHH--HHhCCEEEEE-ECCEEEEecCHHHHH
Confidence 999999999999999887543222358999999999853 4679999999 899999999988765
No 363
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.97 E-value=2.5e-31 Score=244.51 Aligned_cols=133 Identities=47% Similarity=0.776 Sum_probs=120.0
Q ss_pred eeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----hccccEEEEecCCCCCCCCC
Q 046786 52 LKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----EVKRRTGFVAQNNVFYPHLT 127 (604)
Q Consensus 52 L~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~~lT 127 (604)
|+|+|+++++||+++|+||||||||||+++|+|..+ |++|+|.++|+++.. ..++.++|++|++.+++.+|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~-----~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t 75 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP-----PDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLT 75 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH-----ESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSB
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccc-----ccccccccccccccccccccccccccccccccccccccc
Confidence 799999999999999999999999999999999985 579999999999864 45778999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 046786 128 VAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTS 206 (604)
Q Consensus 128 v~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPts 206 (604)
|+|+ ...++++++++.+++.+..++.++ +....||||||||++||++|+.+|++++|||||+
T Consensus 76 v~~~----------------~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 76 VREN----------------ESDERIEEVLKKLGLEDLLDRKIG-QRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHH----------------HHHHHHHHHHHHTTHGGGTGSBGT-SCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccc----------------cccccccccccccccccccccccc-cccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 9999 223468899999999988887776 4458999999999999999999999999999996
No 364
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=6.5e-31 Score=289.60 Aligned_cols=205 Identities=30% Similarity=0.413 Sum_probs=163.9
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhcccc
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRR 112 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 112 (604)
+...|++.. .+.+.+++|+|+++.+|+.+||+|+||||||||||+|+|... |++|+|...+. -+
T Consensus 4 i~~~~ls~~----~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~-----~~~G~i~~~~~-------~~ 67 (530)
T COG0488 4 ITLENLSLA----YGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE-----PDSGEVTRPKG-------LR 67 (530)
T ss_pred EEEeeeEEe----eCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc-----CCCCeEeecCC-------ce
Confidence 444454443 367889999999999999999999999999999999999885 67999987642 35
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHHhc-------------CCCC--------------CCHHHHHHHHHHHHHHcCCCcc
Q 046786 113 TGFVAQNNVFYPHLTVAETLVFTALLR-------------LPNS--------------LKREEKVLHAEAVINQLGLARC 165 (604)
Q Consensus 113 i~yv~Q~~~l~~~lTv~e~l~f~~~~~-------------~~~~--------------~~~~~~~~~v~~~l~~lgL~~~ 165 (604)
++|++|++.+.+..||.+.+.-+..-. ++.. ...-+.+.++..++..+|+.+.
T Consensus 68 v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~ 147 (530)
T COG0488 68 VGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE 147 (530)
T ss_pred EEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc
Confidence 999999999999999999887543210 0000 0000112467888999999876
Q ss_pred ccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhc
Q 046786 166 RNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMF 245 (604)
Q Consensus 166 ~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~ 245 (604)
++ .+.+||||||.||++|++|+.+|++|+|||||++||..+..-+-+.|++. .| |+|++||| +.-+-+.+
T Consensus 148 -~~-----~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHD-R~FLd~V~ 217 (530)
T COG0488 148 -DR-----PVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHD-RYFLDNVA 217 (530)
T ss_pred -cC-----chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCC-HHHHHHHh
Confidence 54 45599999999999999999999999999999999999999999999865 46 99999999 66788999
Q ss_pred CeEEEEecCCeEE-EecChh
Q 046786 246 NKILLLSSDGSSL-YFGKGE 264 (604)
Q Consensus 246 d~v~ll~~~G~~v-~~G~~~ 264 (604)
++++-+ +.|++. |.|.-+
T Consensus 218 t~I~~l-d~g~l~~y~Gny~ 236 (530)
T COG0488 218 THILEL-DRGKLTPYKGNYS 236 (530)
T ss_pred hheEEe-cCCceeEecCCHH
Confidence 999999 778654 556543
No 365
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=6.1e-30 Score=255.95 Aligned_cols=192 Identities=23% Similarity=0.347 Sum_probs=135.5
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCcHHHHH-HHHHcCCCCCCCCccccEEEEC------------CE-eCCh-hcc-
Q 046786 47 EEKMILKGVSGAVSPGELLAILGPSGCGKTTLL-TALGGRLSNGKDTVTQGHITYN------------GK-QFSA-EVK- 110 (604)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL-~~L~g~~~~~~~~~~~G~I~~~------------G~-~~~~-~~~- 110 (604)
.+..+|+|||+++++||+++|+||||||||||+ ..+.. +|++.+. .. .... ..+
T Consensus 6 ~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~----------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (226)
T cd03270 6 AREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA----------EGQRRYVESLSAYARQFLGQMDKPDVDSIEG 75 (226)
T ss_pred chhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH----------HHHHHHhhcccchhhhhhcccCccccccccC
Confidence 345699999999999999999999999999996 44431 1221110 00 0000 111
Q ss_pred ccEEEEecCCC--CCCCCCHH---HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCcCHHHHH
Q 046786 111 RRTGFVAQNNV--FYPHLTVA---ETLVFTALLRLPNSLKREEKVLHAEAVINQLGLAR-CRNSIIGGRLVRGLSGGERK 184 (604)
Q Consensus 111 ~~i~yv~Q~~~--l~~~lTv~---e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerq 184 (604)
...++..|++. +.|..+|. |...+...+. ......++ .+.++.++|.+ ..+ +.+.+|||||||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~-----~~~~~LSgG~~q 144 (226)
T cd03270 76 LSPAIAIDQKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLS-----RSAPTLSGGEAQ 144 (226)
T ss_pred CCceEEecCCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCccccc-----CccCcCCHHHHH
Confidence 22344444432 24444544 3332221111 11112223 56899999975 344 556799999999
Q ss_pred HHHHHHHHhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEe-----cCCeE
Q 046786 185 RISIGQELLINP--SLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLS-----SDGSS 257 (604)
Q Consensus 185 Rvsia~~L~~~p--~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~-----~~G~~ 257 (604)
|++||++|+.+| ++++|||||+|||+.++..+.+.|++++++|.|||+++|++. .+ ..+|++++|. ++|++
T Consensus 145 rv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~-~~-~~~d~i~~l~~~~~~~~G~i 222 (226)
T cd03270 145 RIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDED-TI-RAADHVIDIGPGAGVHGGEI 222 (226)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHH-HH-HhCCEEEEeCCCccccCCEE
Confidence 999999999998 599999999999999999999999999888999999999986 44 6899999993 47888
Q ss_pred EEec
Q 046786 258 LYFG 261 (604)
Q Consensus 258 v~~G 261 (604)
+++|
T Consensus 223 v~~g 226 (226)
T cd03270 223 VAQG 226 (226)
T ss_pred EecC
Confidence 8876
No 366
>PLN03073 ABC transporter F family; Provisional
Probab=99.97 E-value=8.3e-31 Score=300.42 Aligned_cols=207 Identities=22% Similarity=0.272 Sum_probs=149.1
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeC-----Ch-------------h
Q 046786 47 EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQF-----SA-------------E 108 (604)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~-----~~-------------~ 108 (604)
+++.+|+|+|++|++|+.+||+||||||||||||+|+|+...+ .|++|+|.+.++.+ +. .
T Consensus 188 ~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g--~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~ 265 (718)
T PLN03073 188 GGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDG--IPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQL 265 (718)
T ss_pred CCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC--CCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHH
Confidence 3456999999999999999999999999999999999975211 36689998655432 10 0
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCC---------------CCCHHHHHHHHHHHHHHcCCC-ccccccccC
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPN---------------SLKREEKVLHAEAVINQLGLA-RCRNSIIGG 172 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~---------------~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~ 172 (604)
.++.++|++|++.+... ++.++.........+. ........+++.++++.+|+. +..+
T Consensus 266 ~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~----- 339 (718)
T PLN03073 266 LEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQV----- 339 (718)
T ss_pred HHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHh-----
Confidence 12346777775443221 1111111000000000 000012234677788888885 3344
Q ss_pred ccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEe
Q 046786 173 RLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLS 252 (604)
Q Consensus 173 ~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~ 252 (604)
+.+.+|||||||||+||++|+.+|++|||||||++||+.+...+.+.|+++ |.|||+++|+.. .+...+|++++|
T Consensus 340 ~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviivsHd~~-~l~~~~d~i~~l- 414 (718)
T PLN03073 340 KATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVVSHARE-FLNTVVTDILHL- 414 (718)
T ss_pred CchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEE-
Confidence 446699999999999999999999999999999999999999999999887 689999999964 677889999999
Q ss_pred cCCeEE-EecChhhH
Q 046786 253 SDGSSL-YFGKGEDV 266 (604)
Q Consensus 253 ~~G~~v-~~G~~~~~ 266 (604)
++|++. |.|+.+..
T Consensus 415 ~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 415 HGQKLVTYKGDYDTF 429 (718)
T ss_pred ECCEEEEeCCCHHHH
Confidence 899996 67766543
No 367
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.5e-30 Score=239.53 Aligned_cols=191 Identities=26% Similarity=0.400 Sum_probs=163.2
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEEC--CEeCC-----h----hc-cccEEE
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYN--GKQFS-----A----EV-KRRTGF 115 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~--G~~~~-----~----~~-~~~i~y 115 (604)
..++|+|+|++++.||++++=||||||||||||+|.|.+. |++|+|.+. |..++ + +. ++.|||
T Consensus 23 ~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~-----~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGy 97 (235)
T COG4778 23 RLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL-----PDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGY 97 (235)
T ss_pred EeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC-----CCCceEEEEeCcchhhhhccChHHHHHHHHhhhHH
Confidence 4579999999999999999999999999999999999874 689999986 33332 1 22 457999
Q ss_pred EecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhC
Q 046786 116 VAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLIN 195 (604)
Q Consensus 116 v~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~ 195 (604)
|.|.-...|..+..|.+.-.+.- .+.+.+..+.++.+++.+|++.+.... -.+.+.||||+|||.|||.++.|
T Consensus 98 VSQFLRviPRV~aLdVvaePll~---~gv~~~~a~~~a~~Ll~rLnlperLW~----LaPaTFSGGEqQRVNIaRgfivd 170 (235)
T COG4778 98 VSQFLRVIPRVSALDVVAEPLLA---RGVPREVARAKAADLLTRLNLPERLWS----LAPATFSGGEQQRVNIARGFIVD 170 (235)
T ss_pred HHHHHHhccCcchHHHHHhHHHH---cCCCHHHHHHHHHHHHHHcCCCHHHhc----CCCcccCCchheehhhhhhhhcc
Confidence 99998888888888877766543 356778888899999999999875543 34779999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEE
Q 046786 196 PSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLL 251 (604)
Q Consensus 196 p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll 251 (604)
-+||+|||||+.||..++..++++|++-+.+|..+|=+-||- +.-...+||++-+
T Consensus 171 ~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDe-evre~vadR~~~~ 225 (235)
T COG4778 171 YPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDE-EVREAVADRLLDV 225 (235)
T ss_pred CceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccH-HHHHHHhhheeec
Confidence 999999999999999999999999999988999999999993 4455678999888
No 368
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=1.6e-29 Score=256.73 Aligned_cols=199 Identities=26% Similarity=0.350 Sum_probs=153.9
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHH-----cCCC-----CCC---C---CccccEEEECCEeCChh----
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALG-----GRLS-----NGK---D---TVTQGHITYNGKQFSAE---- 108 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~-----g~~~-----~~~---~---~~~~G~I~~~G~~~~~~---- 108 (604)
..-|+|||..|+.|++++|.|+||||||||++.+. .... ++. . ...+--|.++..++...
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 44699999999999999999999999999998552 1110 000 0 00012466777665311
Q ss_pred ----------ccc----------------cEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC
Q 046786 109 ----------VKR----------------RTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGL 162 (604)
Q Consensus 109 ----------~~~----------------~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL 162 (604)
.|+ .+.|..++...+..+||.|++.|...++ ..+++.++++.+||
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL 158 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGL 158 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCC
Confidence 010 2456666666677899999999876432 12456789999999
Q ss_pred Cc-cccccccCccCCCcCHHHHHHHHHHHHHhhC---CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 046786 163 AR-CRNSIIGGRLVRGLSGGERKRISIGQELLIN---PSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPA 238 (604)
Q Consensus 163 ~~-~~~~~vg~~~~~~LSgGerqRvsia~~L~~~---p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~ 238 (604)
.+ ..+ +.++.||||||||+.||++|+.+ |++++|||||+|||+.....+.+.|++++++|.|||+++|++.
T Consensus 159 ~~l~l~-----~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~ 233 (261)
T cd03271 159 GYIKLG-----QPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD 233 (261)
T ss_pred chhhhc-----CccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 76 344 55679999999999999999996 7999999999999999999999999999988999999999985
Q ss_pred hHHHhhcCeEEEEe-----cCCeEEEecCh
Q 046786 239 SSLFYMFNKILLLS-----SDGSSLYFGKG 263 (604)
Q Consensus 239 ~~i~~~~d~v~ll~-----~~G~~v~~G~~ 263 (604)
.+ ..+|+++.|. ++|++++.|++
T Consensus 234 -~i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 234 -VI-KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred -HH-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 34 5799999994 48999999974
No 369
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=1e-29 Score=299.79 Aligned_cols=206 Identities=26% Similarity=0.421 Sum_probs=168.5
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccc
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKR 111 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~ 111 (604)
.++..|.+..... .+....|+|||++|++|+++||+||-|||||+||.+|.|-++ ..+|+|.++|.
T Consensus 518 ~i~i~~~sfsW~~-~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~-----~~sG~v~v~gs-------- 583 (1381)
T KOG0054|consen 518 AIEIKNGSFSWDS-ESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP-----KLSGSVAVNGS-------- 583 (1381)
T ss_pred eEEEeeeeEecCC-CCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc-----cccceEEEcCe--------
Confidence 3444555444433 234458999999999999999999999999999999999885 45999999985
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCCCcCHHHHH
Q 046786 112 RTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLA-------RCRNSIIGGRLVRGLSGGERK 184 (604)
Q Consensus 112 ~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerq 184 (604)
++||||.+.++.. |||||+.|+..+ .+ ++-+++++...|+ +.-.|.||+ +.-.|||||||
T Consensus 584 -iaYv~Q~pWI~ng-TvreNILFG~~~------d~----~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGE-rGinLSGGQKq 650 (1381)
T KOG0054|consen 584 -VAYVPQQPWIQNG-TVRENILFGSPY------DE----ERYDKVIKACALKKDLEILPFGDLTEIGE-RGINLSGGQKQ 650 (1381)
T ss_pred -EEEeccccHhhCC-cHHHhhhcCccc------cH----HHHHHHHHHccCHhHHhhcCCCCcceecC-CccCCcHhHHH
Confidence 8999999998865 999999997532 22 2344555555544 233577884 45689999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChh
Q 046786 185 RISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGE 264 (604)
Q Consensus 185 Rvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~ 264 (604)
|+++|||+-+|++|++||.|.|++|++...++.+..-+..-++||+|++|||. +....+|.|++| ++|++...|+.+
T Consensus 651 RIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql--~~L~~ad~Iivl-~~G~I~~~Gty~ 727 (1381)
T KOG0054|consen 651 RISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQL--QFLPHADQIIVL-KDGKIVESGTYE 727 (1381)
T ss_pred HHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCch--hhhhhCCEEEEe-cCCeEecccCHH
Confidence 99999999999999999999999999999998766554444689999999985 467889999999 999999999999
Q ss_pred hHH
Q 046786 265 DVI 267 (604)
Q Consensus 265 ~~~ 267 (604)
++.
T Consensus 728 el~ 730 (1381)
T KOG0054|consen 728 ELL 730 (1381)
T ss_pred HHH
Confidence 987
No 370
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=2.8e-29 Score=296.07 Aligned_cols=242 Identities=20% Similarity=0.321 Sum_probs=188.7
Q ss_pred ccccccccccchhhhhhHHH----H----hhhhh--hhhheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCC
Q 046786 4 ENKGSAGIENMDEENQSQRE----L----QKQNV--EDMLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGC 73 (604)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~----~----~~~~~--~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGa 73 (604)
-+..+.+.||+.+-.+.+.| . ++++. +..++..|++.++.. +...+|||||++|+|||-+||+|..||
T Consensus 1100 lEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp--~lp~VLk~is~~I~p~eKVGIVGRTGa 1177 (1381)
T KOG0054|consen 1100 LENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRP--NLPLVLKGISFTIKPGEKVGIVGRTGA 1177 (1381)
T ss_pred HHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCC--CCcchhcCceEEEcCCceEEEeCCCCC
Confidence 34556677777666554333 1 11111 112455566665543 346799999999999999999999999
Q ss_pred cHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHH
Q 046786 74 GKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEK 149 (604)
Q Consensus 74 GKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~ 149 (604)
|||||.++|-.+.. |.+|+|.+||.++.. ++|++++.+||||.+|.. |||.||.=.. ..+++
T Consensus 1178 GKSSL~~aLFRl~e-----~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG-TvR~NLDPf~------e~sD~-- 1243 (1381)
T KOG0054|consen 1178 GKSSLILALFRLVE-----PAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG-TVRFNLDPFD------EYSDD-- 1243 (1381)
T ss_pred CHHHHHHHHHHhcC-----ccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecC-ccccccCccc------ccCHH--
Confidence 99999999999875 568999999999974 689999999999999987 9999985221 12222
Q ss_pred HHHHHHHHHHcCCC-------ccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 046786 150 VLHAEAVINQLGLA-------RCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSK 222 (604)
Q Consensus 150 ~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~ 222 (604)
.+-+.|+..+|. ...|+.|. +....+|-||||-+++||||+++++||+|||.|++.|+.+-..|.+.||+
T Consensus 1244 --~IW~ALe~~~Lk~~v~~~p~~Ld~~v~-egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~ 1320 (1381)
T KOG0054|consen 1244 --EIWEALERCQLKDVVSSLPGGLDSEVS-EGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIRE 1320 (1381)
T ss_pred --HHHHHHHHhChHHHHhhCCcCCCceec-CCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHH
Confidence 334444444433 34566665 45678999999999999999999999999999999999999999999998
Q ss_pred HHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHHH
Q 046786 223 LAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVIN 268 (604)
Q Consensus 223 la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~~ 268 (604)
--+ ++|||.+-|.... +.+ +|||++| ++|+++.+|+|.++++
T Consensus 1321 ~F~-dcTVltIAHRl~T-Vmd-~DrVlVl-d~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1321 EFK-DCTVLTIAHRLNT-VMD-SDRVLVL-DAGRVVEFDSPAELLS 1362 (1381)
T ss_pred Hhc-CCeEEEEeeccch-hhh-cCeEEEe-eCCeEeecCChHHHHh
Confidence 653 7999999999874 444 7999999 8999999999998874
No 371
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.96 E-value=2.2e-29 Score=246.53 Aligned_cols=170 Identities=16% Similarity=0.248 Sum_probs=134.2
Q ss_pred eceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCC----CCccccEEEECCEeCCh-hccccEEEEecCCCCCCCCC
Q 046786 53 KGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGK----DTVTQGHITYNGKQFSA-EVKRRTGFVAQNNVFYPHLT 127 (604)
Q Consensus 53 ~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~----~~~~~G~I~~~G~~~~~-~~~~~i~yv~Q~~~l~~~lT 127 (604)
+++++++++| +++|+||||||||||+++|+|+.++.. ..+..|++.++|++... ..++.++||+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 7789999999 999999999999999999999864320 11235788888887643 3356899999998765
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHh----hCCCeEEEeC
Q 046786 128 VAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELL----INPSLLFLDE 203 (604)
Q Consensus 128 v~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~----~~p~illLDE 203 (604)
|.. . . .++++++++. .+..+ +.++.||||||||++||++|+ .+|++++|||
T Consensus 89 ------~~~--~-----~----~~~~~~~l~~---~~~~~-----~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 ------YSI--I-----S----QGDVSEIIEA---PGKKV-----QRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred ------eeE--E-----e----hhhHHHHHhC---CCccc-----cchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 110 0 0 2356667766 33334 456799999999999999997 4669999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCC
Q 046786 204 PTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDG 255 (604)
Q Consensus 204 PtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G 255 (604)
||+|||+.....+.+.|+++++ +.|||++||++. . ...+|+++.+.+.+
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~-~-~~~~d~v~~~~~~~ 192 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSK-ETQFIVITHRKG-T-MEAADRLYGVTMQE 192 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH-H-HhhcceEEEEEecc
Confidence 9999999999999999999976 689999999985 3 46899999995544
No 372
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.95 E-value=2.3e-29 Score=232.64 Aligned_cols=197 Identities=31% Similarity=0.465 Sum_probs=169.4
Q ss_pred ceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----hccccEEEEecCCCCCCC
Q 046786 50 MILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----EVKRRTGFVAQNNVFYPH 125 (604)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~~ 125 (604)
+-|-.+|+++..||++-++|||||||||||-.++|+++ -+|+|.++|+++.. ++.|.-+|..|+..-...
T Consensus 13 tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~------~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~ 86 (248)
T COG4138 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS------GSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFA 86 (248)
T ss_pred ccccccccccccceEEEEECCCCccHHHHHHHHhCCCC------CCceEEECCcchhHHhHhHHHHHHHHHhhccCCcch
Confidence 35788999999999999999999999999999999985 38999999999853 566677899988765556
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhh-----CC--Ce
Q 046786 126 LTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLI-----NP--SL 198 (604)
Q Consensus 126 lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~-----~p--~i 198 (604)
+-|.+.+... .+.++....++++.+.++|.+... +.+..|||||-|||-+|...+. || ++
T Consensus 87 mpV~~YL~L~--------qP~~~~a~~i~~i~~~L~l~DKL~-----Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~L 153 (248)
T COG4138 87 MPVWHYLTLH--------QPDKTRTELLNDVAGALALDDKLG-----RSTNQLSGGEWQRVRLAAVVLQITPDANPAGQL 153 (248)
T ss_pred hhhhhhhhhc--------CchHHHHHHHHHHHhhhcccchhh-----hhhhhcCcccceeeEEeEEEEEecCCCCcccee
Confidence 7888887653 234556667889999999987665 6677999999999999976653 34 68
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 199 LFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 199 llLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
|+||||.++||......+-+.|.+++.+|.+||++.||.+. ..+-+|++.+| +.|+++..|..++++
T Consensus 154 LllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNh-TLrhA~~~wLL-~rG~l~~~G~~~eVl 220 (248)
T COG4138 154 LLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNH-TLRHAHRAWLL-KRGKLLASGRREEVL 220 (248)
T ss_pred EEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhh-HHHHHHHHHHH-hcCeEEeecchhhhc
Confidence 99999999999999999999999999999999999999874 56789999999 899999999999885
No 373
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.95 E-value=1.9e-27 Score=256.49 Aligned_cols=201 Identities=27% Similarity=0.441 Sum_probs=172.5
Q ss_pred eeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-----hccccEEEEecC---CCC
Q 046786 51 ILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-----EVKRRTGFVAQN---NVF 122 (604)
Q Consensus 51 iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-----~~~~~i~yv~Q~---~~l 122 (604)
.++|+||++++||+++|-|-=|||+|-|+++|.|..+ +.+|+|.+||+++.. ..+..++|||.| +-+
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~-----~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl 348 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP-----ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGL 348 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc-----CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcC
Confidence 5899999999999999999999999999999999654 458999999998742 456789999998 458
Q ss_pred CCCCCHHHHHHHHHHhcCC-C-CCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCCCcCHHHHHHHHHHHHHhhCCCeE
Q 046786 123 YPHLTVAETLVFTALLRLP-N-SLKREEKVLHAEAVINQLGLARC-RNSIIGGRLVRGLSGGERKRISIGQELLINPSLL 199 (604)
Q Consensus 123 ~~~lTv~e~l~f~~~~~~~-~-~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~il 199 (604)
+..++|.+|+.++...+.. . ..+....++.+++..+.|++... .+ ..+..||||.+|||.||+.|.++|++|
T Consensus 349 ~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~-----~~v~~LSGGNQQKVvlarwL~~~p~vL 423 (500)
T COG1129 349 VLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPE-----QPIGTLSGGNQQKVVLARWLATDPKVL 423 (500)
T ss_pred cCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCcc-----chhhcCCchhhhhHHHHHHHhcCCCEE
Confidence 8899999999988332221 1 24555556778999999998632 23 456699999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecCh
Q 046786 200 FLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKG 263 (604)
Q Consensus 200 lLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~ 263 (604)
||||||.|.|.-+..+|.+++++++++|++||+++.+. +|+..+||||++| ++|+++..=+.
T Consensus 424 ilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSEl-pEll~~~DRIlVm-~~Gri~~e~~~ 485 (500)
T COG1129 424 ILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSEL-PELLGLSDRILVM-REGRIVGELDR 485 (500)
T ss_pred EECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCCh-HHHHhhCCEEEEE-ECCEEEEEecc
Confidence 99999999999999999999999999999999999996 5899999999999 99999875443
No 374
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.95 E-value=5.1e-27 Score=258.82 Aligned_cols=189 Identities=31% Similarity=0.461 Sum_probs=154.9
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCC-CCCCCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNN-VFYPHL 126 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~-~l~~~l 126 (604)
++.+++++||.+.+|+.+||+||||+|||||||+|+|... |.+|+|.+.- .-.+||..|+. .+.+..
T Consensus 334 ~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~-----~~~G~v~~g~-------~v~igyf~Q~~~~l~~~~ 401 (530)
T COG0488 334 GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG-----PLSGTVKVGE-------TVKIGYFDQHRDELDPDK 401 (530)
T ss_pred CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc-----cCCceEEeCC-------ceEEEEEEehhhhcCccC
Confidence 3689999999999999999999999999999999999875 4589998652 23599999986 445778
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 046786 127 TVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARC-RNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPT 205 (604)
Q Consensus 127 Tv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPt 205 (604)
|+.|++.-.. |. .. +..+...|..+++... .. ++++.||||||.|+.+|+.++.+|.+|+|||||
T Consensus 402 t~~d~l~~~~----~~-~~----e~~~r~~L~~f~F~~~~~~-----~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPT 467 (530)
T COG0488 402 TVLEELSEGF----PD-GD----EQEVRAYLGRFGFTGEDQE-----KPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPT 467 (530)
T ss_pred cHHHHHHhhC----cc-cc----HHHHHHHHHHcCCChHHHh-----CchhhcCHhHHHHHHHHHHhccCCCEEEEcCCC
Confidence 9999986432 11 11 4568899999999753 23 456699999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEE-EecChhhHHH
Q 046786 206 SGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSL-YFGKGEDVIN 268 (604)
Q Consensus 206 sgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v-~~G~~~~~~~ 268 (604)
+.||..+...+.+.|.+.. -|||+++||. .-+-..+++++.+ .+ ++. |.|..++..+
T Consensus 468 NhLDi~s~~aLe~aL~~f~---Gtvl~VSHDr-~Fl~~va~~i~~~-~~-~~~~~~g~y~~y~~ 525 (530)
T COG0488 468 NHLDIESLEALEEALLDFE---GTVLLVSHDR-YFLDRVATRIWLV-ED-KVEEFEGGYEDYLE 525 (530)
T ss_pred ccCCHHHHHHHHHHHHhCC---CeEEEEeCCH-HHHHhhcceEEEE-cC-ceeEcCCCHHHHHH
Confidence 9999999999999998873 4999999996 4688999999999 55 444 4476554443
No 375
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=1.7e-27 Score=240.60 Aligned_cols=192 Identities=16% Similarity=0.271 Sum_probs=135.9
Q ss_pred cccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCC-----------CCCCcccc--------EEEECCEe-
Q 046786 45 SDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSN-----------GKDTVTQG--------HITYNGKQ- 104 (604)
Q Consensus 45 ~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~-----------~~~~~~~G--------~I~~~G~~- 104 (604)
+++++.++++++ |++++|+|||||||||||++|++.+.. +-..+.+| +|.+++.+
T Consensus 11 sy~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~ 85 (243)
T cd03272 11 SYKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDN 85 (243)
T ss_pred CcccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCC
Confidence 345667888887 789999999999999999999843210 00112244 56665532
Q ss_pred ---CC-h--hccccEEEEecCCCCCC-CCCHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHHHcCCCccccccccCccCC
Q 046786 105 ---FS-A--EVKRRTGFVAQNNVFYP-HLTVAETLVFTALLRLPNSLKRE-EKVLHAEAVINQLGLARCRNSIIGGRLVR 176 (604)
Q Consensus 105 ---~~-~--~~~~~i~yv~Q~~~l~~-~lTv~e~l~f~~~~~~~~~~~~~-~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 176 (604)
+. . ..++.++|++|+..+++ ..|..|...+......+...... ..+.+ +.+.+++.+..+ +.++
T Consensus 86 ~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~---i~~l~~l~~~~~-----~~~~ 157 (243)
T cd03272 86 RFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGK---INSLTNMKQDEQ-----QEMQ 157 (243)
T ss_pred ccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCc---hHHhhhcccccc-----cccc
Confidence 11 1 35677999999887777 46777766665544322211000 00112 233344444333 4567
Q ss_pred CcCHHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEe
Q 046786 177 GLSGGERKRISIGQELLI----NPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLS 252 (604)
Q Consensus 177 ~LSgGerqRvsia~~L~~----~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~ 252 (604)
.||||||||++||++|+. +|+++++||||+|||+.++..+.+.|+++++ +++||+++|++ ++...+|++++|.
T Consensus 158 ~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l~ 234 (243)
T cd03272 158 QLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGVK 234 (243)
T ss_pred ccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEEE
Confidence 999999999999999974 5899999999999999999999999999976 78899999985 4678999999984
No 376
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=3.6e-28 Score=240.64 Aligned_cols=181 Identities=15% Similarity=0.190 Sum_probs=136.1
Q ss_pred cccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCC
Q 046786 45 SDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYP 124 (604)
Q Consensus 45 ~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~ 124 (604)
+++++.+++++++ ++++|+||||||||||+++|.-. +|.+.....+++++|++|+..+++
T Consensus 13 ~~~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~---------------~G~~~~~~~~~~i~~~~~~~~~~~ 72 (212)
T cd03274 13 SYAGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV---------------FGFRASKMRQKKLSDLIHNSAGHP 72 (212)
T ss_pred cCCCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH---------------hccCHHHhhhhhHHHHhcCCCCCC
Confidence 4456779999987 89999999999999999999732 222221112356899999998899
Q ss_pred CCCHHHHHHHHHHhcCC-----CCCCHHHHHH--HHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhh---
Q 046786 125 HLTVAETLVFTALLRLP-----NSLKREEKVL--HAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLI--- 194 (604)
Q Consensus 125 ~lTv~e~l~f~~~~~~~-----~~~~~~~~~~--~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~--- 194 (604)
.+|++|.+.+....... .+...+.... ...++++.++|.+..++. ++.+|+|||||++||++++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~-----~~~lS~G~~~r~~la~al~~~~~ 147 (212)
T cd03274 73 NLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKN-----ISNLSGGEKTLSSLALVFALHHY 147 (212)
T ss_pred CCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccc-----hhhcCHHHHHHHHHHHHHHhccc
Confidence 99999887765432100 0111111110 125667778887766644 55899999999999999974
Q ss_pred -CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEec
Q 046786 195 -NPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSS 253 (604)
Q Consensus 195 -~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~ 253 (604)
+|+++++||||+|||+.+...+.+.|+++++ +.|+|+++|++ ++...+|++++|..
T Consensus 148 ~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~-~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 148 KPTPLYVMDEIDAALDFRNVSIVANYIKERTK-NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred CCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 4799999999999999999999999999864 57888888985 57889999999943
No 377
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.94 E-value=1.5e-26 Score=227.86 Aligned_cols=168 Identities=22% Similarity=0.308 Sum_probs=127.9
Q ss_pred ceEEEEecCeEEEEECCCCCcHHHHHHHHH----cCCCCCCCCccccEEEECCEeCC-hhccccEEEEecCC-----CCC
Q 046786 54 GVSGAVSPGELLAILGPSGCGKTTLLTALG----GRLSNGKDTVTQGHITYNGKQFS-AEVKRRTGFVAQNN-----VFY 123 (604)
Q Consensus 54 ~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~----g~~~~~~~~~~~G~I~~~G~~~~-~~~~~~i~yv~Q~~-----~l~ 123 (604)
..++.+.+| +++|+|||||||||||++|. |..+ +++|.+..+.+.+. ...+..+++++|++ ...
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~-----~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~ 88 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELP-----PNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTIT 88 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCC-----cccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEE
Confidence 344667788 99999999999999999995 7654 34555542222222 13456799999987 344
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHH------HHHHHHHhhCCC
Q 046786 124 PHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKR------ISIGQELLINPS 197 (604)
Q Consensus 124 ~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR------vsia~~L~~~p~ 197 (604)
..+|+.|++.+. ... .+++.+ ++.++.||+||+|| ++||++++.+|+
T Consensus 89 r~~~~~~~~~~~---------~~~----~~~~~~--------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~ 141 (204)
T cd03240 89 RSLAILENVIFC---------HQG----ESNWPL--------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCG 141 (204)
T ss_pred EEhhHhhceeee---------chH----HHHHHH--------------hcCccccCccHHHHHHHHHHHHHHHHhccCCC
Confidence 556888888652 111 122333 24567999999996 789999999999
Q ss_pred eEEEeCCCCCCCHHHHH-HHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCe
Q 046786 198 LLFLDEPTSGLDSTMAK-KILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGS 256 (604)
Q Consensus 198 illLDEPtsgLD~~~~~-~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~ 256 (604)
++++||||++||+..+. .+.+.|++++++ |.|||+++|++. ....+|+++.|.++|+
T Consensus 142 illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~~~~ 200 (204)
T cd03240 142 ILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEKDGR 200 (204)
T ss_pred EEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEeeCCC
Confidence 99999999999999999 999999999876 899999999975 3467999999966664
No 378
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.93 E-value=8.3e-27 Score=237.02 Aligned_cols=183 Identities=18% Similarity=0.225 Sum_probs=136.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCE-eC-C-----hhccccEEEEecCC---------CCCCC
Q 046786 62 GELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGK-QF-S-----AEVKRRTGFVAQNN---------VFYPH 125 (604)
Q Consensus 62 Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~-~~-~-----~~~~~~i~yv~Q~~---------~l~~~ 125 (604)
..+++|+|||||||||||++|++.+.+. ..|++...|. ++ . ...+..+++++|++ .+.|.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~----~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ 100 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGIT----NLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPE 100 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhccc----ccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCce
Confidence 4499999999999999999999987521 1467777765 32 1 11234799999985 34567
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccc---------------cccCccCCCcCHHHHHHHHHHH
Q 046786 126 LTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNS---------------IIGGRLVRGLSGGERKRISIGQ 190 (604)
Q Consensus 126 lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~---------------~vg~~~~~~LSgGerqRvsia~ 190 (604)
+||.+++......+.... .++...+++.++++.+|+...... ..-+..++.||||||||++||+
T Consensus 101 ltV~r~I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~ 179 (251)
T cd03273 101 ITVTRQIVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSL 179 (251)
T ss_pred EEEEEEEEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHH
Confidence 899988865432111000 122334678899999999611000 0112457799999999999999
Q ss_pred HHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEe
Q 046786 191 ELL----INPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLS 252 (604)
Q Consensus 191 ~L~----~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~ 252 (604)
+|+ .+|+++++||||+|||+.....+.+.|+++++ |.|||+++|++ ++.+.+|+++-+.
T Consensus 180 al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~-g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 180 ILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFK-GSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECCH--HHHHhCCEEEEEE
Confidence 998 57899999999999999999999999999964 89999999994 5778899998873
No 379
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.93 E-value=6e-25 Score=265.88 Aligned_cols=137 Identities=29% Similarity=0.372 Sum_probs=112.7
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCCCcCHHHHHHHHHHHHHh---hCCC
Q 046786 122 FYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARC-RNSIIGGRLVRGLSGGERKRISIGQELL---INPS 197 (604)
Q Consensus 122 l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRvsia~~L~---~~p~ 197 (604)
.+...||.|+|.++..-........++..+++ +.++.+||.+. .+ +.+.+||||||||+.||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~-----q~~~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLG-----RPLSSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhc-----CccccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 45678999999887652211112233444556 58899999864 45 456799999999999999998 6999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEec------CCeEEEecChhhHH
Q 046786 198 LLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSS------DGSSLYFGKGEDVI 267 (604)
Q Consensus 198 illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~------~G~~v~~G~~~~~~ 267 (604)
+++|||||+|||+.+...+++.|++++++|.|||+++|++. .+ ..+|+++.| . +|+++..|+++++.
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L-~p~gg~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLEL-GPEGGNLGGYLLASCSPEELI 905 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEE-ccCCCCCCCEEEEeCCHHHHH
Confidence 99999999999999999999999999988999999999986 45 899999999 5 78999999998874
No 380
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.93 E-value=2.6e-25 Score=220.50 Aligned_cols=179 Identities=22% Similarity=0.209 Sum_probs=124.0
Q ss_pred eceEEEEe-cCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECC--EeCC-hhccccEEEEecCCCCCCCCCH
Q 046786 53 KGVSGAVS-PGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNG--KQFS-AEVKRRTGFVAQNNVFYPHLTV 128 (604)
Q Consensus 53 ~~vs~~i~-~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G--~~~~-~~~~~~i~yv~Q~~~l~~~lTv 128 (604)
++++|... +|++++|+|||||||||||++|++.+. + +..+....+. ..+. ...+..+++++|++.... ++
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~-g---~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~ 91 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALY-G---KTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RV 91 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEe-c---CccccccchhHHHHhcCCCccEEEEEEEEECCeEE--EE
Confidence 56666544 589999999999999999999997542 1 1123333221 0111 133456999999864311 11
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhh----------CCCe
Q 046786 129 AETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLI----------NPSL 198 (604)
Q Consensus 129 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~----------~p~i 198 (604)
.... ..+.++..+.+ .++..++.+..+ +.+..||||||||++||++|+. +|++
T Consensus 92 ~r~~----------gl~~~~~~~~~--~l~~g~l~~~l~-----~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~ 154 (213)
T cd03279 92 ERSR----------GLDYDQFTRIV--LLPQGEFDRFLA-----RPVSTLSGGETFLASLSLALALSEVLQNRGGARLEA 154 (213)
T ss_pred EEec----------CCCHHHHHHhh--hhhhcchHHHhc-----CCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCE
Confidence 1111 22332222111 233334444433 4567999999999999999985 5789
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCe
Q 046786 199 LFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGS 256 (604)
Q Consensus 199 llLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~ 256 (604)
++|||||+|||+.+...+.+.|++++++|+|||++||++. .+...+|+++++ ++|.
T Consensus 155 lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~-~~~~~~~~i~~~-~~~~ 210 (213)
T cd03279 155 LFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEE-LKERIPQRLEVI-KTPG 210 (213)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchH-HHHhhCcEEEEE-ecCC
Confidence 9999999999999999999999999877999999999985 567778899998 6653
No 381
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.92 E-value=3.6e-24 Score=249.64 Aligned_cols=127 Identities=28% Similarity=0.428 Sum_probs=107.6
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCcCHHHHHHHHHHHHHhhCC---CeEEE
Q 046786 126 LTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLAR-CRNSIIGGRLVRGLSGGERKRISIGQELLINP---SLLFL 201 (604)
Q Consensus 126 lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p---~illL 201 (604)
+||.|++.|...+. + ..+..+.++.+||.+ ..+ +.+.+||||||||+.||++|+.+| ++++|
T Consensus 792 ltv~E~l~~f~~~~------~---i~~~l~~L~~vgL~~l~l~-----~~~~tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP------K---IARKLQTLVDVGLGYIKLG-----QPATTLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch------h---hhHHHHHHHHCCCCccccc-----CCcccCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 78999999875432 1 123467899999976 344 456799999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEe-----cCCeEEEecChhhHHH
Q 046786 202 DEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLS-----SDGSSLYFGKGEDVIN 268 (604)
Q Consensus 202 DEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~-----~~G~~v~~G~~~~~~~ 268 (604)
||||+|||+.+...+++.|+++.++|.|||+++|++. .+ ..+|+++.|. .+|++++.|+++++..
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~-~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~ 927 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD-VI-KTADWIIDLGPEGGDGGGEIVATGTPEEVAK 927 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-HhCCEEEEecCCcCCCCCEEEEeCCHHHHHh
Confidence 9999999999999999999999888999999999985 34 6799999993 4899999999887743
No 382
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.92 E-value=3.4e-24 Score=227.07 Aligned_cols=206 Identities=26% Similarity=0.398 Sum_probs=177.0
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeC----Ch--hccccEEEEecCC--
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQF----SA--EVKRRTGFVAQNN-- 120 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~----~~--~~~~~i~yv~Q~~-- 120 (604)
...+++|||++++||+++|.|=+|-|-+.|+.+|+|+.+ +.+|+|.++|+++ +. ..+..++|||+|.
T Consensus 271 ~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~-----~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~ 345 (501)
T COG3845 271 VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK-----PASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHG 345 (501)
T ss_pred CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc-----cCCceEEECCEeccccCCHHHHHhcCCccCChhhcc
Confidence 468999999999999999999999999999999999875 3479999999996 22 2345799999986
Q ss_pred -CCCCCCCHHHHHHHHHHhcCC----CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhC
Q 046786 121 -VFYPHLTVAETLVFTALLRLP----NSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLIN 195 (604)
Q Consensus 121 -~l~~~lTv~e~l~f~~~~~~~----~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~ 195 (604)
.+.+.+|+.||+.+...-+.| ......+..+.+.++++.++.....- ..+.+.||||.+||+-+||+|..+
T Consensus 346 ~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~----~~~a~~LSGGNqQK~IlaREl~~~ 421 (501)
T COG3845 346 HGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSP----DAPARSLSGGNQQKLILARELARR 421 (501)
T ss_pred CccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCC----CcchhhcCCcceehhhhhhhhccC
Confidence 467889999999887543211 12455667778899999999873211 145679999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhh
Q 046786 196 PSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGED 265 (604)
Q Consensus 196 p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~ 265 (604)
|++|+..+||.|||..++..|.+.|.+.+++|+.|++++-+. ++++.++|++.+| .+|+++...++++
T Consensus 422 p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dL-DEil~lsDrIaVi-~~Gri~~~~~~~~ 489 (501)
T COG3845 422 PDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDL-DEILELSDRIAVI-YEGRIVGIVPPEE 489 (501)
T ss_pred CCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhH-HHHHHhhheeeee-eCCceeccccccc
Confidence 999999999999999999999999999999999999999997 4899999999999 8999998888765
No 383
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.92 E-value=3e-25 Score=210.75 Aligned_cols=231 Identities=23% Similarity=0.297 Sum_probs=179.9
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeC---Ch-h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQF---SA-E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~---~~-~ 108 (604)
+...|+...+..+.+...+++++|+++..||+-+++|+||||||-.-|+|.|..+. +...+..+..+++.++ ++ +
T Consensus 4 LDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kd-nW~vTADR~Rf~~idLL~L~Pr~ 82 (330)
T COG4170 4 LDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKD-NWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred ccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhccccc-ceEEEhhhcccccchhhcCChHH
Confidence 34557777777777778899999999999999999999999999999999998763 2234455666776654 22 2
Q ss_pred c----cccEEEEecCCC--CCCCCCHHHHHHHHHHhcC--CCCCC-HHHHHHHHHHHHHHcCCCccccccccCccCCCcC
Q 046786 109 V----KRRTGFVAQNNV--FYPHLTVAETLVFTALLRL--PNSLK-REEKVLHAEAVINQLGLARCRNSIIGGRLVRGLS 179 (604)
Q Consensus 109 ~----~~~i~yv~Q~~~--l~~~lTv~e~l~f~~~~~~--~~~~~-~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 179 (604)
. .+.|++++|++. +-|.-+|...+--..-... .+... -.-+++++-++|..+|+.+..| +-..++.+|.
T Consensus 83 RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkD--IM~SYP~ElT 160 (330)
T COG4170 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--IMRSYPYELT 160 (330)
T ss_pred hhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHH--HHHhCcchhc
Confidence 2 246889999985 4454444333321110000 01111 1124567889999999998776 4456889999
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecCCeEE
Q 046786 180 GGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSDGSSL 258 (604)
Q Consensus 180 gGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v 258 (604)
-||-|+|.||.|++.+|++|+.||||+.+|+.++.++.++|.++.. +|.||++++||.. .+.+-+|++-+| .-|+.+
T Consensus 161 eGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~-~is~W~d~i~Vl-YCGQ~~ 238 (330)
T COG4170 161 EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQ-MISQWADKINVL-YCGQTV 238 (330)
T ss_pred cCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHH-HHHHHhhheEEE-Eecccc
Confidence 9999999999999999999999999999999999999999999986 5999999999976 688999999999 899999
Q ss_pred EecChhhHHH
Q 046786 259 YFGKGEDVIN 268 (604)
Q Consensus 259 ~~G~~~~~~~ 268 (604)
..++.+++++
T Consensus 239 ESa~~e~l~~ 248 (330)
T COG4170 239 ESAPSEELVT 248 (330)
T ss_pred cccchhHHhc
Confidence 9999888764
No 384
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.92 E-value=2e-24 Score=237.30 Aligned_cols=197 Identities=29% Similarity=0.420 Sum_probs=154.3
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccc
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKR 111 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~ 111 (604)
.++..|+.+.. ...+..|++.|+.+++||-+.|.||||||||||+|+|+|+-+-+ +|+|..- -..
T Consensus 392 ~i~~~nl~l~~---p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g-----~G~I~~P-------~~~ 456 (604)
T COG4178 392 GITLENLSLRT---PDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG-----SGRISMP-------ADS 456 (604)
T ss_pred eeEEeeeeEEC---CCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccC-----CCceecC-------CCC
Confidence 34555554432 23458999999999999999999999999999999999998732 5777543 123
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc-CccCCCcCHHHHHHHHHHH
Q 046786 112 RTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIG-GRLVRGLSGGERKRISIGQ 190 (604)
Q Consensus 112 ~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg-~~~~~~LSgGerqRvsia~ 190 (604)
.+-|+||.+.+... |.+|-+.|+... ...+ .+.+.++|.++||.+..+..-+ ++--+.||+|||||+++||
T Consensus 457 ~~lflpQ~PY~p~G-tLre~l~YP~~~---~~~~----d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafAR 528 (604)
T COG4178 457 ALLFLPQRPYLPQG-TLREALCYPNAA---PDFS----DAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFAR 528 (604)
T ss_pred ceEEecCCCCCCCc-cHHHHHhCCCCC---CCCC----hHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHH
Confidence 58899999998776 999999774311 1122 3457789999999876654322 2345789999999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecC
Q 046786 191 ELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSD 254 (604)
Q Consensus 191 ~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~ 254 (604)
.|+++|++++|||.||+||+.+...+.+.+++-.. +.|||-+.|+|. +..+.++.+-+.++
T Consensus 529 ilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp-~~tvISV~Hr~t--l~~~h~~~l~l~~~ 589 (604)
T COG4178 529 LLLHKPKWVFLDEATSALDEETEDRLYQLLKEELP-DATVISVGHRPT--LWNFHSRQLELLDD 589 (604)
T ss_pred HHHcCCCEEEEecchhccChHHHHHHHHHHHhhCC-CCEEEEeccchh--hHHHHhhheeeccc
Confidence 99999999999999999999999999999988543 799999999975 55666776666333
No 385
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.90 E-value=5.6e-23 Score=239.28 Aligned_cols=126 Identities=30% Similarity=0.429 Sum_probs=104.7
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCCCcCHHHHHHHHHHHHHhh---CCCeEE
Q 046786 125 HLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARC-RNSIIGGRLVRGLSGGERKRISIGQELLI---NPSLLF 200 (604)
Q Consensus 125 ~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRvsia~~L~~---~p~ill 200 (604)
.+||.|.+.|...+. . ..+..++++.+||... .+ +..++|||||+||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---~------i~~~l~~L~~~gL~~l~l~-----~~~~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---S------ISRKLQTLCDVGLGYIKLG-----QPATTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---c------hhHHHHHHHHcCCCchhhc-----CccccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 367888888765431 1 1234678899999753 34 5567999999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEe-----cCCeEEEecChhhH
Q 046786 201 LDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLS-----SDGSSLYFGKGEDV 266 (604)
Q Consensus 201 LDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~-----~~G~~v~~G~~~~~ 266 (604)
|||||+|||+.....+++.|+++.++|.|||+++|++. .+ ..+|+++.|. ++|++++.|+++++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~-~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD-VI-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999999999999999999988999999999985 34 6799999993 48999999998764
No 386
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.90 E-value=2.1e-24 Score=221.50 Aligned_cols=189 Identities=25% Similarity=0.330 Sum_probs=155.6
Q ss_pred ceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----hccccEEEEecCCCCCCC
Q 046786 50 MILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----EVKRRTGFVAQNNVFYPH 125 (604)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~~ 125 (604)
-=+..||++|+.||++-|+|.||||||||++.|.|+.+ |++|+|++||++++. ++|+.++-|+-|-.+|+.
T Consensus 337 FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~-----PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ 411 (546)
T COG4615 337 FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ-----PQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQ 411 (546)
T ss_pred ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccC-----CCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHh
Confidence 45889999999999999999999999999999999986 679999999999964 567777878888777775
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 046786 126 LTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPT 205 (604)
Q Consensus 126 lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPt 205 (604)
+- .++... ..+.++..++.+.+.|...-.-|+-..-.||.|||||+++-.||+-+-+|+++||=-
T Consensus 412 ll------------~~e~~a---s~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWA 476 (546)
T COG4615 412 LL------------GPEGKA---SPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWA 476 (546)
T ss_pred hh------------CCccCC---ChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhh
Confidence 31 122211 124577888888887754433344446689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHH-HHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 206 SGLDSTMAKKILVSLSK-LAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 206 sgLD~~~~~~i~~~l~~-la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
+..||.-+..+.+.+-- ++++|+||+.+|||- .-|..+||++.+ .+|+++..-
T Consensus 477 ADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd--~YF~~ADrll~~-~~G~~~e~t 530 (546)
T COG4615 477 ADQDPAFRREFYQVLLPLLKEQGKTIFAISHDD--HYFIHADRLLEM-RNGQLSELT 530 (546)
T ss_pred ccCChHHHHHHHHHHhHHHHHhCCeEEEEecCc--hhhhhHHHHHHH-hcCceeecc
Confidence 99999999998877655 556799999999994 468899999999 899998654
No 387
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.90 E-value=2.2e-23 Score=204.30 Aligned_cols=167 Identities=22% Similarity=0.226 Sum_probs=122.2
Q ss_pred eeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEE--ECCEeCCh-----hccccEEEEecCCCCCC
Q 046786 52 LKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHIT--YNGKQFSA-----EVKRRTGFVAQNNVFYP 124 (604)
Q Consensus 52 L~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~--~~G~~~~~-----~~~~~i~yv~Q~~~l~~ 124 (604)
++++++.+.+| +.+|+|||||||||||.+|...+. |+.. ..|..... .....+.+++|+..+.+
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~--------~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~ 82 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG--------GKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA 82 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc--------CCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC
Confidence 47788888888 889999999999999999975432 1111 11221111 12345788888766554
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHH----hhCCCeEE
Q 046786 125 HLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQEL----LINPSLLF 200 (604)
Q Consensus 125 ~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L----~~~p~ill 200 (604)
+ ... ...+++++++++. .+..+ +.++.||+|||||++||++| +.+|++++
T Consensus 83 ~-----------------~~~-~~~~~~~~~~l~~---~~~~~-----~~~~~lS~G~k~r~~ia~al~~~~~~~p~ill 136 (198)
T cd03276 83 N-----------------PLC-VLSQDMARSFLTS---NKAAV-----RDVKTLSGGERSFSTVCLLLSLWEVMESPFRC 136 (198)
T ss_pred C-----------------cCC-HHHHHHHHHHhcc---ccccC-----CcccccChhHHHHHHHHHHHHHhcccCCCEEE
Confidence 1 011 1123467777776 44444 45679999999999999999 58999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC---CCEEEEEecCCchHHHhhcCeEEEEecCCe
Q 046786 201 LDEPTSGLDSTMAKKILVSLSKLAEG---GRTILMTIHQPASSLFYMFNKILLLSSDGS 256 (604)
Q Consensus 201 LDEPtsgLD~~~~~~i~~~l~~la~~---g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~ 256 (604)
|||||+|||+.....+.+.|++++++ +.||++++|++. ++.. +|+|-++ +.++
T Consensus 137 lDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~-~i~~-~d~v~~~-~~~~ 192 (198)
T cd03276 137 LDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDIS-GLAS-SDDVKVF-RMKD 192 (198)
T ss_pred ecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccc-cccc-ccceeEE-EecC
Confidence 99999999999999999999998653 368999999986 4555 5999999 6543
No 388
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.89 E-value=3.9e-23 Score=209.60 Aligned_cols=183 Identities=16% Similarity=0.220 Sum_probs=121.2
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEe--------CC-h--hccccEEEEecCCCC-CCCCC
Q 046786 60 SPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQ--------FS-A--EVKRRTGFVAQNNVF-YPHLT 127 (604)
Q Consensus 60 ~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~--------~~-~--~~~~~i~yv~Q~~~l-~~~lT 127 (604)
.++ +++|+|||||||||||++|++.+.+ ..|++..++.. .. + ...-.+.|..|++.. .-..+
T Consensus 21 ~~~-~~~i~G~NGsGKStll~ai~~~l~~-----~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~ 94 (247)
T cd03275 21 FDR-FTCIIGPNGSGKSNLMDAISFVLGE-----KSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRI 94 (247)
T ss_pred CCC-eEEEECCCCCCHHHHHHHHHHHhCC-----CcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEE
Confidence 344 9999999999999999999997741 23555433211 00 0 111124444444321 00111
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc---------ccC--------ccCCCcCHHHHHHHHHHH
Q 046786 128 VAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSI---------IGG--------RLVRGLSGGERKRISIGQ 190 (604)
Q Consensus 128 v~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~---------vg~--------~~~~~LSgGerqRvsia~ 190 (604)
+.+.. ...+.. + +....+.++++++.+|+....... +.+ +.+..||||||||++||+
T Consensus 95 ~~~~~---~~~~in-g--k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~ 168 (247)
T cd03275 95 ITGGS---SSYRIN-G--KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALAL 168 (247)
T ss_pred EECCc---eEEEEC-C--EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHH
Confidence 11110 000111 1 011123457888999986432111 111 234799999999999999
Q ss_pred HHhhC----CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCe
Q 046786 191 ELLIN----PSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGS 256 (604)
Q Consensus 191 ~L~~~----p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~ 256 (604)
+++.+ |+++++||||+|||+.....+.+.|++++++|.+||+++|++ ++...+|+++++.+++.
T Consensus 169 al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~~~~~ 236 (247)
T cd03275 169 LFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVYRDQE 236 (247)
T ss_pred HHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEEecCC
Confidence 99975 899999999999999999999999999987799999999995 46788999999966654
No 389
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.89 E-value=1.2e-22 Score=212.03 Aligned_cols=181 Identities=26% Similarity=0.370 Sum_probs=143.1
Q ss_pred eeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCHHH
Q 046786 51 ILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTVAE 130 (604)
Q Consensus 51 iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~e 130 (604)
-|+-=.+++..||+++++||||-||||+.++|+|.++ |++|+ . ..-+++|=||--.--...||++
T Consensus 356 ~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik-----Pdeg~----~------~~~~vSyKPQyI~~~~~gtV~~ 420 (591)
T COG1245 356 KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK-----PDEGS----E------EDLKVSYKPQYISPDYDGTVED 420 (591)
T ss_pred EEEecCCeeecceEEEEECCCCcchHHHHHHHhcccc-----CCCCC----C------ccceEeecceeecCCCCCcHHH
Confidence 3555556778889999999999999999999999986 56776 1 1234888888644334579999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 046786 131 TLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDS 210 (604)
Q Consensus 131 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~ 210 (604)
.+.-....+...+ ---.++++-|+|++..+ +.+.+|||||.|||+||.+|..++++++||||++-||+
T Consensus 421 ~l~~~~~~~~~~s-------~~~~ei~~pl~l~~i~e-----~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDv 488 (591)
T COG1245 421 LLRSAIRSAFGSS-------YFKTEIVKPLNLEDLLE-----RPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDV 488 (591)
T ss_pred HHHHhhhhhcccc-------hhHHhhcCccchHHHHh-----cccccCCchhHHHHHHHHHhccccCEEEecCchhhccH
Confidence 8875543321111 12356788888988777 45569999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 211 TMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 211 ~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
..+..+-+.||+..+ .++|.+++-||.. -+-.+.|++++. +|+.--+|
T Consensus 489 EqR~~vakvIRR~~e~~~kta~vVdHDi~-~~dyvsDr~ivF--~GePg~~g 537 (591)
T COG1245 489 EQRIIVAKVIRRFIENNEKTALVVDHDIY-MIDYVSDRLIVF--EGEPGKHG 537 (591)
T ss_pred HHHHHHHHHHHHHHhhcCceEEEEeccee-hhhhhhceEEEE--ecCCCccC
Confidence 999999999999987 4899999999975 567788999987 45544444
No 390
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.88 E-value=1.2e-22 Score=216.15 Aligned_cols=204 Identities=24% Similarity=0.331 Sum_probs=137.5
Q ss_pred cccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCC
Q 046786 45 SDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYP 124 (604)
Q Consensus 45 ~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~ 124 (604)
...++.+++|+++++.+|+-++|+|||||||||+|++|+|+..|. |.+=.++.-.+++.+...+.+-+|.+ +
T Consensus 84 s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~---p~~~d~y~ls~e~~ps~~~av~~v~~-----~ 155 (614)
T KOG0927|consen 84 SFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPI---PEHIDFYLLSREIEPSEKQAVQAVVM-----E 155 (614)
T ss_pred ccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCC---CcccchhhhcccCCCchHHHHHHHhh-----h
Confidence 346788999999999999999999999999999999999998652 22223333333322111111111110 0
Q ss_pred CCCHHHHHHHHHH------------------hcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCcCHHHHHH
Q 046786 125 HLTVAETLVFTAL------------------LRLPNSLKREEKVLHAEAVINQLGLAR-CRNSIIGGRLVRGLSGGERKR 185 (604)
Q Consensus 125 ~lTv~e~l~f~~~------------------~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqR 185 (604)
.-..+.-+++.+. .|+ ..+..+....++.++|..+|... ..+ +.+.++|||+|.|
T Consensus 156 ~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~-~~~d~~~~~~k~~~il~glgf~~~m~~-----k~~~~~SgGwrmR 229 (614)
T KOG0927|consen 156 TDHERKRLEYLAEDLAQACDDKEKDELDELYERL-DEMDNDTFEAKAAKILHGLGFLSEMQD-----KKVKDLSGGWRMR 229 (614)
T ss_pred hHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHH-HhhCchhHHHHHHHHHHhcCCCHhHHH-----HHhhccCchHHHH
Confidence 0000111110000 000 01122233345667777777643 344 5677999999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCe-EEEecChh
Q 046786 186 ISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGS-SLYFGKGE 264 (604)
Q Consensus 186 vsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~-~v~~G~~~ 264 (604)
+++||+|..+|++|+|||||+|||..+..-+-+.|.+.-+ .++|+++|. .+-+-..|.+|+-+ .+++ +.|.|+.+
T Consensus 230 ~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~--~~lVi~sh~-QDfln~vCT~Ii~l-~~kkl~~y~Gnyd 305 (614)
T KOG0927|consen 230 AALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR--IILVIVSHS-QDFLNGVCTNIIHL-DNKKLIYYEGNYD 305 (614)
T ss_pred HHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC--ceEEEEecc-hhhhhhHhhhhhee-cccceeeecCCHH
Confidence 9999999999999999999999999999998888877642 188999997 45788899999999 7888 55666655
Q ss_pred hH
Q 046786 265 DV 266 (604)
Q Consensus 265 ~~ 266 (604)
..
T Consensus 306 qy 307 (614)
T KOG0927|consen 306 QY 307 (614)
T ss_pred HH
Confidence 43
No 391
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.87 E-value=2.5e-22 Score=213.77 Aligned_cols=186 Identities=21% Similarity=0.320 Sum_probs=144.7
Q ss_pred ceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCC--CCCCCCC
Q 046786 50 MILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNN--VFYPHLT 127 (604)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~--~l~~~lT 127 (604)
.++++++|-+..++-+|++||||+|||||||++.|.+. |+.|.|.-.- ...+++.-|+. .+--..+
T Consensus 404 ~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~-----p~~G~vs~~~-------H~~~~~y~Qh~~e~ldl~~s 471 (614)
T KOG0927|consen 404 MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ-----PTIGMVSRHS-------HNKLPRYNQHLAEQLDLDKS 471 (614)
T ss_pred hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc-----cccccccccc-------cccchhhhhhhHhhcCcchh
Confidence 58888888999999999999999999999999999885 5688875332 22345555542 3333457
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 046786 128 VAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSG 207 (604)
Q Consensus 128 v~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsg 207 (604)
+.|++.=. .+++.+.+.+..+|..+||....++ .+.+.||+|||+||..|+.++..|.+|+|||||+|
T Consensus 472 ~le~~~~~--------~~~~~~~e~~r~ilgrfgLtgd~q~----~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnh 539 (614)
T KOG0927|consen 472 SLEFMMPK--------FPDEKELEEMRSILGRFGLTGDAQV----VPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNH 539 (614)
T ss_pred HHHHHHHh--------ccccchHHHHHHHHHHhCCCccccc----cchhhcccccchhHHHHHHHhcCCcEEEecCCCcC
Confidence 77776422 1112334568899999999855442 45779999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecCh
Q 046786 208 LDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKG 263 (604)
Q Consensus 208 LD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~ 263 (604)
||..+...+-+.|.++ .-+||+++||-. -+-+.++++.+..+++...+.|+.
T Consensus 540 LDi~tid~laeaiNe~---~Ggvv~vSHDfr-lI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 540 LDIETIDALAEAINEF---PGGVVLVSHDFR-LISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred CCchhHHHHHHHHhcc---CCceeeeechhh-HHHHHHHHhHhhccCceeecCccH
Confidence 9999999998888776 348999999965 688889999998444556677754
No 392
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.86 E-value=4.3e-21 Score=205.75 Aligned_cols=190 Identities=23% Similarity=0.363 Sum_probs=145.8
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLT 127 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lT 127 (604)
+..+++|+|++|..|+-+.|.||||||||+|||+|+|+-+. .+|.+.--.+.- .+.+-||||.|.+.-. |
T Consensus 447 g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~-----~~G~l~k~~~~~----~~~lfflPQrPYmt~G-T 516 (659)
T KOG0060|consen 447 GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPS-----TGGKLTKPTDGG----PKDLFFLPQRPYMTLG-T 516 (659)
T ss_pred CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccccc-----CCCeEEecccCC----CCceEEecCCCCcccc-c
Confidence 56789999999999999999999999999999999999862 478887543321 1458899999987655 9
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC-------ccCCCcCHHHHHHHHHHHHHhhCCCeEE
Q 046786 128 VAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGG-------RLVRGLSGGERKRISIGQELLINPSLLF 200 (604)
Q Consensus 128 v~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~-------~~~~~LSgGerqRvsia~~L~~~p~ill 200 (604)
.||-+-|....--+ .++....+++.+.|+.++|.|..+. .|+ .....||+||+||++.||-+.++|++-+
T Consensus 517 LRdQvIYP~~~~~~--~~~~~~d~~i~r~Le~v~L~hl~~r-~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~Ai 593 (659)
T KOG0060|consen 517 LRDQVIYPLKAEDM--DSKSASDEDILRILENVQLGHLLER-EGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAI 593 (659)
T ss_pred hhheeeccCccccc--cccCCCHHHHHHHHHHhhhhhHHHH-hCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEE
Confidence 99998886321111 1111223457777888877765542 221 2346899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCC
Q 046786 201 LDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDG 255 (604)
Q Consensus 201 LDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G 255 (604)
|||-||++|......+.+.++++ |.|.|-+.|.++ +.+.=|.++-|..+|
T Consensus 594 LDE~TSAv~~dvE~~~Yr~~r~~---giT~iSVgHRkS--L~kfHd~~L~~~g~g 643 (659)
T KOG0060|consen 594 LDECTSAVTEDVEGALYRKCREM---GITFISVGHRKS--LWKFHDYVLRMDGRG 643 (659)
T ss_pred eechhhhccHHHHHHHHHHHHHc---CCeEEEeccHHH--HHhhhhEEEEecCCC
Confidence 99999999999999888887764 899999999976 455456666673333
No 393
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.84 E-value=4.3e-22 Score=194.51 Aligned_cols=205 Identities=26% Similarity=0.448 Sum_probs=182.0
Q ss_pred HHHHHHHHHHHHH-hcCchhH-HHHHHHHHHHHHHHHHHhcCCCC-cchhhHHHHHHHHHHHHhHHHHHHHHHhhHhhhH
Q 046786 353 QHFSVLLRRDLKE-RRHDTFD-GLKIGQILFLSIITGLVWWQSST-DNIEDQVGLLFFYSRQAGFFPLFQALHTFPLERM 429 (604)
Q Consensus 353 ~Q~~~l~~R~~~~-~r~~~~~-~~~~~~~i~~~li~G~~f~~~~~-~~~~~~~g~lf~~~~~~~~~~~~~~i~~~~~er~ 429 (604)
+|++.+++|+++. +|++... ...++..++.++++|.+|.+.++ .+..++.|++++.+...++.........+..||.
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGFNRPGLIFGSIIFSFFSSISGSSISFERERG 80 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhcccccccccccceeeehhhHHhhhhhcccchhhhhhhcc
Confidence 5999999999987 5776666 67899999999999999998764 2223677888777776655555555577889999
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q 046786 430 MLEKERSSGMYRLSSYIMAKTAGDFVMELVLPTVFVIITYWMGGLKARVINFLSTLAATLYTALVAQSLGLAVGALVLNQ 509 (604)
Q Consensus 430 v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~F~~~~~~~~l~~~~~~s~~~~i~a~~~~~ 509 (604)
.+.||+.++.|++.+|.+||.+.+++..++.++++..+.|++.|++.+ +|+.+++.+++..+++.++|.++++++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~ 158 (210)
T PF01061_consen 81 TLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPSF 158 (210)
T ss_pred ccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhhh
Confidence 999999999999999999999999999999999999999999999887 778888888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccC--CchhhHHhhhhcCHHHHHHHHHHHHhc
Q 046786 510 RKAGTIATTLMLTFLLTGGFFVQ--DVPAFISWLEYLSFTHYSYKLLLMSQY 559 (604)
Q Consensus 510 ~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~y~~~~l~~nef 559 (604)
..+..+.+++..++++++|.++| ++|+|++|+.|+||++|++|++..++|
T Consensus 159 ~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 159 RDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999998 899999999999999999999999876
No 394
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.84 E-value=1.1e-20 Score=185.69 Aligned_cols=154 Identities=22% Similarity=0.182 Sum_probs=110.8
Q ss_pred eeeceEEEEecC-eEEEEECCCCCcHHHHHHHHH-cCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCH
Q 046786 51 ILKGVSGAVSPG-ELLAILGPSGCGKTTLLTALG-GRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTV 128 (604)
Q Consensus 51 iL~~vs~~i~~G-e~~aIlGpsGaGKSTLL~~L~-g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv 128 (604)
-..++|+++.+| ++++|.||||||||||||+|+ +... +..|- .+...-...++|..|....
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~-----~~~G~------~vp~~~~~~~~~~~~~~~~------ 78 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLM-----AQSGL------PIPAAEGSSLPVFENIFAD------ 78 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHH-----HHcCC------CccccccccCcCccEEEEe------
Confidence 456899999999 489999999999999999998 2110 00110 0000001123443343111
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 046786 129 AETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGL 208 (604)
Q Consensus 129 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgL 208 (604)
++..+..+ ...+.+|+|||||+.|+++ +.+|+++++|||++||
T Consensus 79 -------------------------------lg~~~~l~-----~~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~~gl 121 (200)
T cd03280 79 -------------------------------IGDEQSIE-----QSLSTFSSHMKNIARILQH-ADPDSLVLLDELGSGT 121 (200)
T ss_pred -------------------------------cCchhhhh-----cCcchHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCC
Confidence 11111111 2245899999999999977 5899999999999999
Q ss_pred CHHHHHHHH-HHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 209 DSTMAKKIL-VSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 209 D~~~~~~i~-~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
|+.....+. ..++++.+.|.++|++||++ ++..++|+++.+ .+|++.+.+
T Consensus 122 D~~~~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~~~l-~~g~l~~~~ 172 (200)
T cd03280 122 DPVEGAALAIAILEELLERGALVIATTHYG--ELKAYAYKREGV-ENASMEFDP 172 (200)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcCCCe-EEEEEEEec
Confidence 999999996 47888887799999999984 577899999999 889998874
No 395
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.83 E-value=3e-20 Score=184.19 Aligned_cols=82 Identities=22% Similarity=0.240 Sum_probs=68.5
Q ss_pred ccCCCcCHHHHHHHHHHHHH----hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C-CEEEEEecCCchHHHhhcC
Q 046786 173 RLVRGLSGGERKRISIGQEL----LINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-G-RTILMTIHQPASSLFYMFN 246 (604)
Q Consensus 173 ~~~~~LSgGerqRvsia~~L----~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g-~tvi~~~Hq~~~~i~~~~d 246 (604)
..+.+||||||||+.++.+| +.+|+++++||||+|||+.++..+++.|++++++ | .|+|++||+... ..+.+|
T Consensus 122 ~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~-~~~~~~ 200 (213)
T cd03277 122 LDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLP-GLNYHE 200 (213)
T ss_pred cchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhcc-CCcccC
Confidence 34669999999998877554 5899999999999999999999999999999876 5 589999999754 445565
Q ss_pred --eEEEEecCCe
Q 046786 247 --KILLLSSDGS 256 (604)
Q Consensus 247 --~v~ll~~~G~ 256 (604)
++++| ++|+
T Consensus 201 ~~~v~~l-~~g~ 211 (213)
T cd03277 201 KMTVLCV-YNGP 211 (213)
T ss_pred ceEEEEE-ecCc
Confidence 77788 7776
No 396
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=5.4e-21 Score=202.66 Aligned_cols=182 Identities=25% Similarity=0.315 Sum_probs=128.3
Q ss_pred cccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCC-CCC
Q 046786 45 SDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNN-VFY 123 (604)
Q Consensus 45 ~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~-~l~ 123 (604)
..+.+.+|++-++++..|.-++++|+||+|||||||+|+. |+| .|.++..+.+. .|++-.. .+.
T Consensus 89 a~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~-----------~~v--~~f~veqE~~g--~~t~~~~~~l~ 153 (582)
T KOG0062|consen 89 AYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN-----------GQV--SGFHVEQEVRG--DDTEALQSVLE 153 (582)
T ss_pred eecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh-----------cCc--CccCchhheec--cchHHHhhhhh
Confidence 3467889999999999999999999999999999999986 222 22222222221 1222211 122
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEe
Q 046786 124 PHLTVAETLVFTALLRLPNSLKRE-EKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLD 202 (604)
Q Consensus 124 ~~lTv~e~l~f~~~~~~~~~~~~~-~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLD 202 (604)
...++.+-+.--.. +... +..+...++|..+|.++..- .++++.||||-|-|+++||||..+|+||+||
T Consensus 154 ~D~~~~dfl~~e~~------l~~~~~l~ei~~~~L~glGFt~emq----~~pt~slSGGWrMrlaLARAlf~~pDlLLLD 223 (582)
T KOG0062|consen 154 SDTERLDFLAEEKE------LLAGLTLEEIYDKILAGLGFTPEMQ----LQPTKSLSGGWRMRLALARALFAKPDLLLLD 223 (582)
T ss_pred ccHHHHHHHHhhhh------hhccchHHHHHHHHHHhCCCCHHHH----hccccccCcchhhHHHHHHHHhcCCCEEeec
Confidence 22222222221111 1111 23334455899999986433 2567899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCe
Q 046786 203 EPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGS 256 (604)
Q Consensus 203 EPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~ 256 (604)
|||+.||..+..-+.+.|+.+. .|+|+++|| +.-+-..|.+|+.+ .+-+
T Consensus 224 EPTNhLDv~av~WLe~yL~t~~---~T~liVSHD-r~FLn~V~tdIIH~-~~~k 272 (582)
T KOG0062|consen 224 EPTNHLDVVAVAWLENYLQTWK---ITSLIVSHD-RNFLNTVCTDIIHL-ENLK 272 (582)
T ss_pred CCcccchhHHHHHHHHHHhhCC---ceEEEEecc-HHHHHHHHHHHHHH-hhhh
Confidence 9999999999999999998874 799999999 55677777788877 4433
No 397
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.82 E-value=1.1e-20 Score=197.60 Aligned_cols=182 Identities=30% Similarity=0.454 Sum_probs=130.4
Q ss_pred EEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCcccc-----EE--EECCEeCChhcc------ccEEEEecC----C
Q 046786 58 AVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQG-----HI--TYNGKQFSAEVK------RRTGFVAQN----N 120 (604)
Q Consensus 58 ~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G-----~I--~~~G~~~~~~~~------~~i~yv~Q~----~ 120 (604)
..++|++++|+||||-||||-+|+|+|.+.|.-... .+ +| .+.|..+..-++ -++..=+|- +
T Consensus 96 ~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~-~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iP 174 (591)
T COG1245 96 TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY-EDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIP 174 (591)
T ss_pred CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC-CCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHH
Confidence 357999999999999999999999999887531100 11 00 011111111011 012222332 2
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEE
Q 046786 121 VFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLF 200 (604)
Q Consensus 121 ~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~ill 200 (604)
..+.. ||.|-|.-. ...-..+++++.|+|++..| +.++.|||||.||++||.+++.++++++
T Consensus 175 k~~KG-~v~elLk~~------------de~g~~devve~l~L~nvl~-----r~v~~LSGGELQr~aIaa~l~rdADvY~ 236 (591)
T COG1245 175 KVVKG-KVGELLKKV------------DERGKFDEVVERLGLENVLD-----RDVSELSGGELQRVAIAAALLRDADVYF 236 (591)
T ss_pred HHhcc-hHHHHHHhh------------hhcCcHHHHHHHhcchhhhh-----hhhhhcCchHHHHHHHHHHHhccCCEEE
Confidence 22222 566655321 11125788999999998887 5567999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 201 LDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 201 LDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
+|||||-||...+....+.++++++.+++||++.||.. .+-.+.|-+.++ . |+--.+|
T Consensus 237 FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLa-vLD~lsD~vhI~-Y-G~pg~YG 294 (591)
T COG1245 237 FDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLA-VLDYLSDFVHIL-Y-GEPGVYG 294 (591)
T ss_pred EcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHH-HHHHhhheeEEE-e-cCCccce
Confidence 99999999999999999999999998999999999975 577788888888 4 4443344
No 398
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.82 E-value=1.3e-19 Score=172.16 Aligned_cols=211 Identities=22% Similarity=0.249 Sum_probs=157.7
Q ss_pred hhheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh---
Q 046786 31 DMLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--- 107 (604)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--- 107 (604)
..++..++.+.++.. .+++-|+|+.++.|.-+.++|.||||||||||+|+|..-. -.|.|.++|++.-.
T Consensus 12 ~aievsgl~f~y~~~---dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv-----~~~~v~VlgrsaFhDt~ 83 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKVS---DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMV-----GGGVVQVLGRSAFHDTS 83 (291)
T ss_pred ceEEEeccEEecccC---CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccc-----cCCeEEEcCcCcccccc
Confidence 346666776665433 3799999999999999999999999999999999996532 25899999987511
Q ss_pred ------------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccC
Q 046786 108 ------------EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLV 175 (604)
Q Consensus 108 ------------~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 175 (604)
++.+.++.-- +-.+...+++.+.+ |+.. .... ++-+++++.|++.-. .+.
T Consensus 84 l~~Sgdl~YLGgeW~~~~~~ag-evplq~D~sae~mi-fgV~-----g~dp----~Rre~LI~iLDIdl~-------WRm 145 (291)
T KOG2355|consen 84 LESSGDLSYLGGEWSKTVGIAG-EVPLQGDISAEHMI-FGVG-----GDDP----ERREKLIDILDIDLR-------WRM 145 (291)
T ss_pred ccccCceeEecccccccccccc-cccccccccHHHHH-hhcc-----CCCh----hHhhhhhhheeccce-------EEE
Confidence 2333333322 22233456665544 4432 1112 244567777776532 235
Q ss_pred CCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecC
Q 046786 176 RGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSD 254 (604)
Q Consensus 176 ~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~ 254 (604)
..+|-||||||.|++.|++.=++|+|||-|-.||..++..+++.+++-++ +|.||+..||--. -+..-..+++.+ +.
T Consensus 146 HkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFD-GLe~Wpthl~yi-~~ 223 (291)
T KOG2355|consen 146 HKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFD-GLETWPTHLVYI-KS 223 (291)
T ss_pred eeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeecc-chhhcchhEEEe-cC
Confidence 58999999999999999999999999999999999999999999999997 5999999999754 466677899999 89
Q ss_pred CeEEEecChhhHHHH
Q 046786 255 GSSLYFGKGEDVINY 269 (604)
Q Consensus 255 G~~v~~G~~~~~~~~ 269 (604)
|+++-.-+.+.+.++
T Consensus 224 Gkl~~~l~~~~i~e~ 238 (291)
T KOG2355|consen 224 GKLVDNLKYQKIKEF 238 (291)
T ss_pred Ceeeeccccchhhhh
Confidence 999976665555544
No 399
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.81 E-value=1e-19 Score=188.11 Aligned_cols=184 Identities=24% Similarity=0.398 Sum_probs=141.4
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCC---CCCCccccEEEECCEeCChhccccEEEEecCCC-C
Q 046786 47 EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSN---GKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNV-F 122 (604)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~---~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~-l 122 (604)
....+|+|+|++++||++++|.|+|||||||||++|.|.... ....|++|.|.+--.. ..+.+|-+.. -
T Consensus 394 ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt-------~~a~iPge~Ep~ 466 (593)
T COG2401 394 IERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT-------VSALIPGEYEPE 466 (593)
T ss_pred eeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc-------hhhccCcccccc
Confidence 356799999999999999999999999999999999996542 1346889988764322 2344454422 2
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEe
Q 046786 123 YPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLD 202 (604)
Q Consensus 123 ~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLD 202 (604)
+..-|+.|.+.- .+.+ ...+.++|++.||.+.. .-.+..++||-|||.|+.||..+...|.+++.|
T Consensus 467 f~~~tilehl~s-----~tGD------~~~AveILnraGlsDAv---lyRr~f~ELStGQKeR~KLAkllaerpn~~~iD 532 (593)
T COG2401 467 FGEVTILEHLRS-----KTGD------LNAAVEILNRAGLSDAV---LYRRKFSELSTGQKERAKLAKLLAERPNVLLID 532 (593)
T ss_pred cCchhHHHHHhh-----ccCc------hhHHHHHHHhhccchhh---hhhccHhhcCcchHHHHHHHHHHhcCCCcEEhh
Confidence 334566666631 1111 12356899999998632 222567899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhh-cCeEEEEe
Q 046786 203 EPTSGLDSTMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYM-FNKILLLS 252 (604)
Q Consensus 203 EPtsgLD~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~-~d~v~ll~ 252 (604)
|=.+.||+.++..+.+.|.++++ .|.|.+++||.|. .+-.+ =|.++++.
T Consensus 533 EF~AhLD~~TA~rVArkiselaRe~giTlivvThrpE-v~~AL~PD~li~vg 583 (593)
T COG2401 533 EFAAHLDELTAVRVARKISELAREAGITLIVVTHRPE-VGNALRPDTLILVG 583 (593)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHhccCCceeEEee
Confidence 99999999999999999999996 4999999999985 44555 48888873
No 400
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.81 E-value=5.6e-19 Score=170.24 Aligned_cols=76 Identities=18% Similarity=0.254 Sum_probs=69.1
Q ss_pred cCHHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEec
Q 046786 178 LSGGERKRISIGQELL----INPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSS 253 (604)
Q Consensus 178 LSgGerqRvsia~~L~----~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~ 253 (604)
||||||||++||++|+ .+|+++++|||++|||+.....+.+.|++++++|.++|+++|++. ....+|+++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE--MFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCeEEEEEE
Confidence 9999999999999996 699999999999999999999999999999877899999999974 4578999999954
Q ss_pred CC
Q 046786 254 DG 255 (604)
Q Consensus 254 ~G 255 (604)
.|
T Consensus 173 ~~ 174 (178)
T cd03239 173 VH 174 (178)
T ss_pred eC
Confidence 33
No 401
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.80 E-value=6.7e-20 Score=179.81 Aligned_cols=135 Identities=18% Similarity=0.219 Sum_probs=103.7
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCH
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTV 128 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv 128 (604)
+.+++|+++.. |++++|+||||||||||||+|+|... +...|.+++.. .+++|.+.+++.+|+
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~----------l~~~G~~v~a~-----~~~~q~~~l~~~~~~ 76 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI----------LAQAGAPVCAS-----SFELPPVKIFTSIRV 76 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH----------HHHcCCEEecC-----ccCcccceEEEeccc
Confidence 45788887765 79999999999999999999998542 11244444221 367787888999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 046786 129 AETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGL 208 (604)
Q Consensus 129 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgL 208 (604)
.|++.++.. ....+ .+++.++++.+++ .+|+++++||||+|+
T Consensus 77 ~d~l~~~~s------~~~~e-~~~~~~iL~~~~~-------------------------------~~p~llllDEp~~gl 118 (199)
T cd03283 77 SDDLRDGIS------YFYAE-LRRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGT 118 (199)
T ss_pred hhccccccC------hHHHH-HHHHHHHHHhccC-------------------------------CCCeEEEEecccCCC
Confidence 999977531 11222 2567777777652 799999999999999
Q ss_pred CHHHHHHHH-HHHHHHHhCCCEEEEEecCCc
Q 046786 209 DSTMAKKIL-VSLSKLAEGGRTILMTIHQPA 238 (604)
Q Consensus 209 D~~~~~~i~-~~l~~la~~g~tvi~~~Hq~~ 238 (604)
|+.....+. ..++++.+.|.|+|++||++.
T Consensus 119 D~~~~~~l~~~ll~~l~~~~~tiiivTH~~~ 149 (199)
T cd03283 119 NSRERQAASAAVLKFLKNKNTIGIISTHDLE 149 (199)
T ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEcCcHH
Confidence 999998775 478888877999999999975
No 402
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=3.3e-19 Score=184.83 Aligned_cols=175 Identities=26% Similarity=0.428 Sum_probs=138.0
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCC--CCCC
Q 046786 47 EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNN--VFYP 124 (604)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~--~l~~ 124 (604)
+.++++++++|-|.-..-+||+||||.||||||++|.|.+. |+.|+..-| .+-+||+--|+. .|-.
T Consensus 598 gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~-----P~~GE~RKn-------hrL~iG~FdQh~~E~L~~ 665 (807)
T KOG0066|consen 598 GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD-----PNDGELRKN-------HRLRIGWFDQHANEALNG 665 (807)
T ss_pred CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCC-----CCcchhhcc-------ceeeeechhhhhHHhhcc
Confidence 55778899999999999999999999999999999999875 567776433 234699988864 3555
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 046786 125 HLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEP 204 (604)
Q Consensus 125 ~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEP 204 (604)
.-|.-|.|.-. + +++.. .+...|-.+||...+||+ .+..||||||-||++|.--+..|+|||||||
T Consensus 666 Eetp~EyLqr~--F----Nlpyq----~ARK~LG~fGL~sHAHTi----kikdLSGGQKaRValaeLal~~PDvlILDEP 731 (807)
T KOG0066|consen 666 EETPVEYLQRK--F----NLPYQ----EARKQLGTFGLASHAHTI----KIKDLSGGQKARVALAELALGGPDVLILDEP 731 (807)
T ss_pred ccCHHHHHHHh--c----CCChH----HHHHHhhhhhhhhccceE----eeeecCCcchHHHHHHHHhcCCCCEEEecCC
Confidence 55776766422 1 23322 355678999999888875 4779999999999999988999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEE
Q 046786 205 TSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLL 251 (604)
Q Consensus 205 tsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll 251 (604)
|++||..+...+-+.|++. .-.||+++||-+ -+.+.-..+.++
T Consensus 732 TNNLDIESIDALaEAIney---~GgVi~VsHDeR-Li~eT~C~LwVv 774 (807)
T KOG0066|consen 732 TNNLDIESIDALAEAINEY---NGGVIMVSHDER-LIVETDCNLWVV 774 (807)
T ss_pred CCCcchhhHHHHHHHHHhc---cCcEEEEecccc-eeeecCceEEEE
Confidence 9999999999999988876 347899999965 345555567776
No 403
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.80 E-value=1.3e-18 Score=192.84 Aligned_cols=129 Identities=30% Similarity=0.472 Sum_probs=108.7
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCC---CeEEE
Q 046786 125 HLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINP---SLLFL 201 (604)
Q Consensus 125 ~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p---~illL 201 (604)
.|||.|...|.... + +..+..+.|..+||.-.. .| +...+|||||.|||-+|.+|.... .+++|
T Consensus 783 ~MTveEA~~FF~~~------p---~I~rkLqtL~dVGLgYi~---LG-QpatTLSGGEaQRvKLA~EL~k~~tg~TlYiL 849 (935)
T COG0178 783 DMTVEEALEFFEAI------P---KIARKLQTLVDVGLGYIK---LG-QPATTLSGGEAQRVKLAKELSKRSTGKTLYIL 849 (935)
T ss_pred hccHHHHHHHHhcc------h---HHHHHHHHHHHcCcceEe---cC-CccccccchHHHHHHHHHHHhhccCCCeEEEe
Confidence 37888888776421 1 123456678889997542 45 677899999999999999999877 89999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEe-----cCCeEEEecChhhHHH
Q 046786 202 DEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLS-----SDGSSLYFGKGEDVIN 268 (604)
Q Consensus 202 DEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~-----~~G~~v~~G~~~~~~~ 268 (604)
||||+||-......+++.|.+|.++|.|||++.|+. ++...+|.|+=|. .+|++++.|+|+++.+
T Consensus 850 DEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 850 DEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 999999999999999999999999999999999997 4778999999885 4689999999999975
No 404
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.79 E-value=1.4e-18 Score=210.99 Aligned_cols=129 Identities=23% Similarity=0.371 Sum_probs=107.6
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhC---CCeEEE
Q 046786 125 HLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLIN---PSLLFL 201 (604)
Q Consensus 125 ~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~---p~illL 201 (604)
.|||.|.+.|... ..+..+.-+.|+.+||.... .| +...+|||||.||+-+|.+|..+ +.+++|
T Consensus 1660 ~mtv~ea~~~F~~---------~~~i~~~L~~L~~vGLgYl~---LG-q~~~tLSGGE~qRikLa~~l~~~~~~~~lyil 1726 (1809)
T PRK00635 1660 QTPIEEVAETFPF---------LKKIQKPLQALIDNGLGYLP---LG-QNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLL 1726 (1809)
T ss_pred cCCHHHHHHHhhc---------cHHHHHHHHHHHHcCCCeee---CC-CcCCccCchHHHHHHHHHHHhcCCCCCcEEEE
Confidence 3677777776521 11234557789999998643 34 66779999999999999999875 789999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEe-----cCCeEEEecChhhHHH
Q 046786 202 DEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLS-----SDGSSLYFGKGEDVIN 268 (604)
Q Consensus 202 DEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~-----~~G~~v~~G~~~~~~~ 268 (604)
||||+||++.....+++.|++|.+.|.|||++.|++ ++...+|.++=|. ++|++++.|+|+++..
T Consensus 1727 DEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~--~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1727 DEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDP--ALLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH--HHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 999999999999999999999999999999999997 4667799999985 3689999999999864
No 405
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=1.5e-18 Score=184.16 Aligned_cols=182 Identities=23% Similarity=0.322 Sum_probs=143.9
Q ss_pred ceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCHH
Q 046786 50 MILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTVA 129 (604)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~ 129 (604)
+++.+++..++.-+-.+++|+||+||||++|++.|-+. |.+|.+.+.+ |.+++|-.|...=+-.+.|-
T Consensus 378 ~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~-----~~rgi~~~~~-------r~ri~~f~Qhhvd~l~~~v~ 445 (582)
T KOG0062|consen 378 QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT-----PTRGIVGRHP-------RLRIKYFAQHHVDFLDKNVN 445 (582)
T ss_pred hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC-----cccceeeecc-------cceecchhHhhhhHHHHHhH
Confidence 68888888888888999999999999999999999764 4578776654 56799999975433334443
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q 046786 130 ETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLD 209 (604)
Q Consensus 130 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD 209 (604)
+ +.+....+ .+.+++ .+++-+..+||+... ....+.+||||||-||.+|.....+|-+|+|||||+.||
T Consensus 446 ~-vd~~~~~~--pG~~~e----e~r~hl~~~Gl~g~l----a~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD 514 (582)
T KOG0062|consen 446 A-VDFMEKSF--PGKTEE----EIRRHLGSFGLSGEL----ALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLD 514 (582)
T ss_pred H-HHHHHHhC--CCCCHH----HHHHHHHhcCCCchh----hhccccccCCcchhHHHHHHHhcCCCcEEEecCCCcccc
Confidence 3 33333333 223333 456788999997532 124467999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEE
Q 046786 210 STMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLY 259 (604)
Q Consensus 210 ~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~ 259 (604)
-.+-..+.+.|+.+ +-.||+++|+- +-+-..|+.+.+. ++|++.-
T Consensus 515 ~dsl~AL~~Al~~F---~GGVv~VSHd~-~fi~~~c~E~Wvv-e~g~vt~ 559 (582)
T KOG0062|consen 515 RDSLGALAKALKNF---NGGVVLVSHDE-EFISSLCKELWVV-EDGKVTP 559 (582)
T ss_pred HHHHHHHHHHHHhc---CCcEEEEECcH-HHHhhcCceeEEE-cCCcEEe
Confidence 99999999999887 34789999995 4688999999999 8998864
No 406
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.78 E-value=3.3e-19 Score=177.80 Aligned_cols=153 Identities=19% Similarity=0.218 Sum_probs=116.7
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEE-EEecCCCCCCCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTG-FVAQNNVFYPHL 126 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~-yv~Q~~~l~~~l 126 (604)
.+.+.+|+++...+|++++|.||||+||||||+.++-.. +..++| |||.+...++
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~----------------------~la~~g~~vpa~~~~~~-- 71 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIV----------------------LMAQIGCFVPCDSADIP-- 71 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHH----------------------HHHHhCCCcCcccEEEe--
Confidence 456899999999999999999999999999999997311 112233 5555432221
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHH--hhCCCeEEEeCC
Q 046786 127 TVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQEL--LINPSLLFLDEP 204 (604)
Q Consensus 127 Tv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L--~~~p~illLDEP 204 (604)
.++++++.+|+.+.. .+++|.|+++++.+++++ +++|++++||||
T Consensus 72 -------------------------~~~~il~~~~l~d~~--------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp 118 (222)
T cd03285 72 -------------------------IVDCILARVGASDSQ--------LKGVSTFMAEMLETAAILKSATENSLIIIDEL 118 (222)
T ss_pred -------------------------ccceeEeeeccccch--------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 123345556665322 358999999999999999 899999999999
Q ss_pred ---CCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecC
Q 046786 205 ---TSGLDSTMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGK 262 (604)
Q Consensus 205 ---tsgLD~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~ 262 (604)
|++||+.+.... .++.+.+ .|.++|++||+ .++.+++|++..+ ++|++.+.+.
T Consensus 119 ~~gT~~lD~~~~~~~--il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i-~~g~~~~~~~ 175 (222)
T cd03285 119 GRGTSTYDGFGLAWA--IAEYIATQIKCFCLFATHF--HELTALADEVPNV-KNLHVTALTD 175 (222)
T ss_pred cCCCChHHHHHHHHH--HHHHHHhcCCCeEEEEech--HHHHHHhhcCCCe-EEEEEEEEEe
Confidence 999999887543 3345544 48999999996 4688999999999 8899988775
No 407
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=6.5e-18 Score=174.18 Aligned_cols=75 Identities=23% Similarity=0.391 Sum_probs=67.3
Q ss_pred CCcCHHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEE
Q 046786 176 RGLSGGERKRISIGQELLI----NPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLL 251 (604)
Q Consensus 176 ~~LSgGerqRvsia~~L~~----~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll 251 (604)
..|||||+||+++|++++. +|+++++||||+|||+.....+.+.|+++++ +.|+|+++|+|. +...+|+++.+
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l 245 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLV 245 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEE
Confidence 3599999999999997654 9999999999999999999999999999875 789999999985 45789999999
Q ss_pred ec
Q 046786 252 SS 253 (604)
Q Consensus 252 ~~ 253 (604)
.+
T Consensus 246 ~~ 247 (276)
T cd03241 246 EK 247 (276)
T ss_pred EE
Confidence 43
No 408
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.76 E-value=1.6e-18 Score=183.69 Aligned_cols=172 Identities=23% Similarity=0.412 Sum_probs=125.5
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCC
Q 046786 47 EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHL 126 (604)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~l 126 (604)
....++..++|.+++|-.+.|.||||||||+|.|+|+|+.| ...|.... + .+.++-|+||.|..- .-
T Consensus 493 ~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWP-----vy~g~L~~------P-~~~~mFYIPQRPYms-~g 559 (728)
T KOG0064|consen 493 AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWP-----VYNGLLSI------P-RPNNIFYIPQRPYMS-GG 559 (728)
T ss_pred CcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCc-----ccCCeeec------C-CCcceEeccCCCccC-cC
Confidence 45568999999999999999999999999999999999986 22333321 1 134589999998754 33
Q ss_pred CHHHHHHHHHH---hcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc----CccCCCcCHHHHHHHHHHHHHhhCCCeE
Q 046786 127 TVAETLVFTAL---LRLPNSLKREEKVLHAEAVINQLGLARCRNSIIG----GRLVRGLSGGERKRISIGQELLINPSLL 199 (604)
Q Consensus 127 Tv~e~l~f~~~---~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg----~~~~~~LSgGerqRvsia~~L~~~p~il 199 (604)
|.+|-+-|.-. ++ .++.++ +..+.+|+.+.|++....-.| ......||||||||+.+||.+-++|+.-
T Consensus 560 tlRDQIIYPdS~e~~~-~kg~~d----~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkya 634 (728)
T KOG0064|consen 560 TLRDQIIYPDSSEQMK-RKGYTD----QDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYA 634 (728)
T ss_pred cccceeecCCcHHHHH-hcCCCH----HHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchh
Confidence 66666544211 00 011222 235566777766654432222 1123479999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q 046786 200 FLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPAS 239 (604)
Q Consensus 200 lLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~ 239 (604)
+|||-||+..+.....+.+..++ .|.+.+-++|+|+-
T Consensus 635 lLDEcTsAvsidvE~~i~~~ak~---~gi~llsithrpsl 671 (728)
T KOG0064|consen 635 LLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPSL 671 (728)
T ss_pred hhhhhhcccccchHHHHHHHHHh---cCceEEEeecCccH
Confidence 99999999999888888877665 49999999999973
No 409
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.75 E-value=6.5e-18 Score=160.42 Aligned_cols=73 Identities=25% Similarity=0.399 Sum_probs=66.9
Q ss_pred CcCHHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEE
Q 046786 177 GLSGGERKRISIGQELLI----NPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLL 251 (604)
Q Consensus 177 ~LSgGerqRvsia~~L~~----~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll 251 (604)
+||+||+||+++|++|+. +|+++++|||++|+|+.....+.+.++++.++|.++|++||++. +...+|+++.|
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~--~~~~~d~~~~l 153 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE--LAELADKLIHI 153 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhhhhEEEE
Confidence 499999999999999987 78999999999999999999999999998766899999999974 55678999998
No 410
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.71 E-value=7e-17 Score=188.58 Aligned_cols=136 Identities=24% Similarity=0.378 Sum_probs=107.1
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCH------HHHHHHHHHHHHHcCCCcc-ccccccCccCCCcCHHHHHHHHHHHHHhhCC
Q 046786 124 PHLTVAETLVFTALLRLPNSLKR------EEKVLHAEAVINQLGLARC-RNSIIGGRLVRGLSGGERKRISIGQELLINP 196 (604)
Q Consensus 124 ~~lTv~e~l~f~~~~~~~~~~~~------~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRvsia~~L~~~p 196 (604)
-.|||.|.+.|...+..+....+ .+..++ -+.+..+||.+. .+ +.+.+|||||+|||.||++|+++|
T Consensus 433 ~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~r-l~~L~~vgL~~l~l~-----r~~~tLSGGE~QRv~LA~aL~~~~ 506 (924)
T TIGR00630 433 SELSIREAHEFFNQLDLTPEEKKIAEEILKEIKER-LGFLIDVGLDYLTLS-----RAAGTLSGGEAQRIRLATQIGSGL 506 (924)
T ss_pred hcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHhHhhccccccccC-----CCcCcCCHHHHHHHHHHHHHhhCC
Confidence 36899999998776532211000 011112 234677788653 34 567799999999999999999986
Q ss_pred --CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEe-----cCCeEEEecChhhHH
Q 046786 197 --SLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLS-----SDGSSLYFGKGEDVI 267 (604)
Q Consensus 197 --~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~-----~~G~~v~~G~~~~~~ 267 (604)
++++|||||+|||+.+...+++.|++++++|.|||+++|++. .+ ..+|+++.|. ++|++++.|+++++.
T Consensus 507 ~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~-~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 507 TGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEE-TI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred CCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 899999999999999999999999999988999999999975 44 5899999993 589999999998874
No 411
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.71 E-value=9e-18 Score=165.17 Aligned_cols=156 Identities=17% Similarity=0.158 Sum_probs=104.9
Q ss_pred ceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHH
Q 046786 54 GVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTVAETLV 133 (604)
Q Consensus 54 ~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~ 133 (604)
..++++.+|++++|.|||||||||||++|++..-. ...|.. +. ..+..++|..|. +..++..+++
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~----~~~g~~------~~-~~~~~i~~~dqi---~~~~~~~d~i- 85 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLL----AQIGCF------VP-AESASIPLVDRI---FTRIGAEDSI- 85 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHH----HHcCCC------cc-ccccccCCcCEE---EEEecCcccc-
Confidence 34555568999999999999999999999963210 112221 10 012234443322 1111111110
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHH
Q 046786 134 FTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMA 213 (604)
Q Consensus 134 f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~ 213 (604)
+ ...+.++++++ |++.+.+++.+|+++++||||+|+|+...
T Consensus 86 ---------------------------------~-----~~~s~~~~e~~-~l~~i~~~~~~~~llllDEp~~gld~~~~ 126 (202)
T cd03243 86 ---------------------------------S-----DGRSTFMAELL-ELKEILSLATPRSLVLIDELGRGTSTAEG 126 (202)
T ss_pred ---------------------------------c-----CCceeHHHHHH-HHHHHHHhccCCeEEEEecCCCCCCHHHH
Confidence 0 11235665555 57777788999999999999999999988
Q ss_pred HHHHH-HHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhH
Q 046786 214 KKILV-SLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266 (604)
Q Consensus 214 ~~i~~-~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~ 266 (604)
..+.. .++.+.+.+.++|++||++ ++...+|++..+ ..|++...++..+.
T Consensus 127 ~~l~~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l-~~~~~~~~~~~~~~ 177 (202)
T cd03243 127 LAIAYAVLEHLLEKGCRTLFATHFH--ELADLPEQVPGV-KNLHMEELITTGGL 177 (202)
T ss_pred HHHHHHHHHHHHhcCCeEEEECChH--HHHHHhhcCCCe-EEEEEEEEecCCee
Confidence 88765 5677777789999999985 567788888888 78999988876443
No 412
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.71 E-value=6.8e-17 Score=189.02 Aligned_cols=136 Identities=25% Similarity=0.388 Sum_probs=108.5
Q ss_pred CCCCHHHHHHHHHHhcCCCCC-C-----HHHHHHHHHHHHHHcCCCcc-ccccccCccCCCcCHHHHHHHHHHHHHhhCC
Q 046786 124 PHLTVAETLVFTALLRLPNSL-K-----REEKVLHAEAVINQLGLARC-RNSIIGGRLVRGLSGGERKRISIGQELLINP 196 (604)
Q Consensus 124 ~~lTv~e~l~f~~~~~~~~~~-~-----~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRvsia~~L~~~p 196 (604)
..+||.|.+.|.-.+..+... . .++..++++ .++.+||.+. .| +.+.+|||||+|||.||++|..+|
T Consensus 435 ~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~-----r~~~~LSgGE~QRv~LA~aL~~~~ 508 (943)
T PRK00349 435 SELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLS-----RSAGTLSGGEAQRIRLATQIGSGL 508 (943)
T ss_pred hcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCC-----CchhhCCHHHHHHHHHHHHHhhCC
Confidence 468999999985544322110 0 012233443 6888899764 45 556799999999999999999997
Q ss_pred --CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEe-----cCCeEEEecChhhHH
Q 046786 197 --SLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLS-----SDGSSLYFGKGEDVI 267 (604)
Q Consensus 197 --~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~-----~~G~~v~~G~~~~~~ 267 (604)
++++|||||+|||+.....+++.|++++++|.|||+++|++. .+ ..+|++++|. ++|++++.|+++++.
T Consensus 509 ~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~-~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 509 TGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDED-TI-RAADYIVDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred CCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence 999999999999999999999999999888999999999986 44 4699999992 478999999998874
No 413
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=2.6e-16 Score=161.74 Aligned_cols=78 Identities=18% Similarity=0.238 Sum_probs=62.3
Q ss_pred cCCCcCHHHHHHHHHHHHHh---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhh
Q 046786 174 LVRGLSGGERKRISIGQELL---------INPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYM 244 (604)
Q Consensus 174 ~~~~LSgGerqRvsia~~L~---------~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~ 244 (604)
..+-+|+||||+++||++|+ .+|+++++||||++||+..+..+.+.++++. .+ ++++|+.. .+...
T Consensus 180 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~-ii~~~~~~-~~~~~ 254 (270)
T cd03242 180 AADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QT-FVTTTDLA-DFDAL 254 (270)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CE-EEEeCCch-hccch
Confidence 35568999999999999985 6999999999999999999999999998763 34 45555433 35555
Q ss_pred c---CeEEEEecCCeE
Q 046786 245 F---NKILLLSSDGSS 257 (604)
Q Consensus 245 ~---d~v~ll~~~G~~ 257 (604)
+ ++++-+ ++|++
T Consensus 255 ~~~~~~i~~l-~~g~i 269 (270)
T cd03242 255 WLRRAQIFRV-DAGTL 269 (270)
T ss_pred hccCccEEEE-eCcEE
Confidence 5 678888 78875
No 414
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.69 E-value=4.1e-17 Score=160.58 Aligned_cols=137 Identities=20% Similarity=0.230 Sum_probs=100.8
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEE-EEecCCCCCCC
Q 046786 47 EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTG-FVAQNNVFYPH 125 (604)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~-yv~Q~~~l~~~ 125 (604)
.++.+.+|+++.+++|++++|+||||+|||||++++++..- ..++| || +...+.
T Consensus 14 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~----------------------la~~G~~v---pa~~~~ 68 (204)
T cd03282 14 KKNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI----------------------MAQIGCFV---PAEYAT 68 (204)
T ss_pred CCcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH----------------------HHHcCCCc---chhhcC
Confidence 34579999999999999999999999999999999988631 11122 33 333455
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 046786 126 LTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPT 205 (604)
Q Consensus 126 lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPt 205 (604)
+++.|++... ++..+..+ +..+.+|+|++|+ +.+.+++++|+++++|||+
T Consensus 69 l~~~d~I~~~------------------------~~~~d~~~-----~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~ 118 (204)
T cd03282 69 LPIFNRLLSR------------------------LSNDDSME-----RNLSTFASEMSET-AYILDYADGDSLVLIDELG 118 (204)
T ss_pred ccChhheeEe------------------------cCCccccc-----hhhhHHHHHHHHH-HHHHHhcCCCcEEEecccc
Confidence 6666666321 12221111 2345899999965 5667789999999999999
Q ss_pred CCCCHHHHHHH-HHHHHHHHhCCCEEEEEecCCc
Q 046786 206 SGLDSTMAKKI-LVSLSKLAEGGRTILMTIHQPA 238 (604)
Q Consensus 206 sgLD~~~~~~i-~~~l~~la~~g~tvi~~~Hq~~ 238 (604)
+|+|+.....+ ...++.+.+.|.++|++||+..
T Consensus 119 ~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~ 152 (204)
T cd03282 119 RGTSSADGFAISLAILECLIKKESTVFFATHFRD 152 (204)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence 99999876665 4567788878999999999864
No 415
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=4.8e-17 Score=168.95 Aligned_cols=201 Identities=26% Similarity=0.360 Sum_probs=143.5
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCC----h-------hccccEEE
Q 046786 47 EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS----A-------EVKRRTGF 115 (604)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~----~-------~~~~~i~y 115 (604)
.++.++.|.|+.|-.|.-++++||||-||||||+.|+.|--. + |..=++++.-+.+- . .-.++...
T Consensus 275 ~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Rala--I-PpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~l 351 (807)
T KOG0066|consen 275 QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALA--I-PPNIDVLLCEQEVVADSTSAIDTVLKADKKRLAL 351 (807)
T ss_pred ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhcc--C-CCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHH
Confidence 457799999999999999999999999999999999997431 1 22345555554431 0 00112222
Q ss_pred EecCCCC-----CCCCCHHHHHHHHH-HhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHH
Q 046786 116 VAQNNVF-----YPHLTVAETLVFTA-LLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIG 189 (604)
Q Consensus 116 v~Q~~~l-----~~~lTv~e~l~f~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia 189 (604)
+..++.| -...|+.|-+.-.+ .+|- +.....+.++..+|.-||++.... +++...+|||-|-|||+|
T Consensus 352 Leee~~L~~q~e~Gd~taaErl~~v~~ELra---iGA~sAEarARRILAGLGFskEMQ----~rPt~kFSGGWRMRvSLA 424 (807)
T KOG0066|consen 352 LEEEAKLMSQIEEGDTTAAERLKEVADELRA---IGADSAEARARRILAGLGFSKEMQ----ERPTTKFSGGWRMRVSLA 424 (807)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHHH---hccccchhHHHHHHhhcCCChhHh----cCCccccCCceeeehhHH
Confidence 2222111 23457766665322 2331 122233456788999999976433 356778999999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEE-EecC
Q 046786 190 QELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSL-YFGK 262 (604)
Q Consensus 190 ~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v-~~G~ 262 (604)
|||-.+|.+|.|||||+.||..+..-+-++|..+. +|.++++||-. -+-..|.+|+.| ++-++- |.|.
T Consensus 425 RALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQg-FLD~VCtdIIHL-D~qkLhyYrGN 493 (807)
T KOG0066|consen 425 RALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQG-FLDSVCTDIIHL-DNQKLHYYRGN 493 (807)
T ss_pred HHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEecccc-hHHHHHHHHhhh-hhhhhhhhcch
Confidence 99999999999999999999999888889998885 69999999965 578889999999 555543 3444
No 416
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.62 E-value=1.4e-15 Score=151.12 Aligned_cols=158 Identities=22% Similarity=0.193 Sum_probs=109.7
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLT 127 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lT 127 (604)
++.+.+|+++..++ ++++|.||||||||||||.|++..- -|+ .|..+.. .+..++|+.| +++.++
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~-------l~~---~g~~vp~-~~~~i~~~~~---i~~~~~ 81 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIAL-------LAQ---IGSFVPA-SKAEIGVVDR---IFTRIG 81 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHH-------Hhc---cCCeecc-ccceecceee---EeccCC
Confidence 45689999999988 9999999999999999999987532 121 1222221 1345777765 466777
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCH--HHHHHHHHHHHHhhCCCeEEEeCC-
Q 046786 128 VAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSG--GERKRISIGQELLINPSLLFLDEP- 204 (604)
Q Consensus 128 v~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg--GerqRvsia~~L~~~p~illLDEP- 204 (604)
+.|++..+ .|. .|.++++-+...+.+|++++||||
T Consensus 82 ~~~~ls~g------------------------------------------~s~f~~e~~~l~~~l~~~~~~~llllDEp~ 119 (216)
T cd03284 82 ASDDLAGG------------------------------------------RSTFMVEMVETANILNNATERSLVLLDEIG 119 (216)
T ss_pred chhhhccC------------------------------------------cchHHHHHHHHHHHHHhCCCCeEEEEecCC
Confidence 77766432 111 233344444444679999999999
Q ss_pred --CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 205 --TSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 205 --tsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
|+++|.... ....++.+.+. +.++|++||+. ++.++.|++.-+ .+|++...+..+++.
T Consensus 120 ~gt~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v-~~~~~~~~~~~~~l~ 180 (216)
T cd03284 120 RGTSTYDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRV-KNFHVAVKEKGGGVV 180 (216)
T ss_pred CCCChHHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCe-EEEEEEEEeeCCeEE
Confidence 888887552 23345555555 88999999995 577888887777 788888877766654
No 417
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.61 E-value=2.2e-15 Score=153.95 Aligned_cols=139 Identities=27% Similarity=0.320 Sum_probs=96.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCC-----hhccccEEEEecCCCCCCCCCHHHHHHHHHH
Q 046786 63 ELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS-----AEVKRRTGFVAQNNVFYPHLTVAETLVFTAL 137 (604)
Q Consensus 63 e~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~ 137 (604)
.-++|+||||||||||+++|+|.++ +++|+|.++|+++. .+..+.++++||++. .+.++|.++..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~-----~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~-~~r~~v~~~~~---- 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS-----TGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDV-GIRTDVLDGCP---- 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC-----CCCceEEECCEEeecchhHHHHHHHhcccccccc-cccccccccch----
Confidence 5789999999999999999999986 46899999999984 134456788888653 34455544321
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH
Q 046786 138 LRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKIL 217 (604)
Q Consensus 138 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~ 217 (604)
+. + |+ ....+..+|+++++|||++ ...+.
T Consensus 182 --------k~------~--------------------------~~-----~~~i~~~~P~villDE~~~------~e~~~ 210 (270)
T TIGR02858 182 --------KA------E--------------------------GM-----MMLIRSMSPDVIVVDEIGR------EEDVE 210 (270)
T ss_pred --------HH------H--------------------------HH-----HHHHHhCCCCEEEEeCCCc------HHHHH
Confidence 00 0 11 2223336999999999974 23344
Q ss_pred HHHHHHHhCCCEEEEEecCCchH-H-----------HhhcCeEEEEecCCeEEEecChhhH
Q 046786 218 VSLSKLAEGGRTILMTIHQPASS-L-----------FYMFNKILLLSSDGSSLYFGKGEDV 266 (604)
Q Consensus 218 ~~l~~la~~g~tvi~~~Hq~~~~-i-----------~~~~d~v~ll~~~G~~v~~G~~~~~ 266 (604)
..++.+ +.|.++|+|+|+++.+ + ...||++++| ++|+ ..|.++++
T Consensus 211 ~l~~~~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L-~~~~--~~g~~~~i 267 (270)
T TIGR02858 211 ALLEAL-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVL-SRRK--GPGTVEAV 267 (270)
T ss_pred HHHHHH-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEE-ecCC--CCCceeec
Confidence 455554 3699999999986532 2 2668999999 6666 55655543
No 418
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.51 E-value=5.3e-14 Score=146.60 Aligned_cols=176 Identities=23% Similarity=0.338 Sum_probs=133.5
Q ss_pred cceeeceEEEEecC-----eEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCC
Q 046786 49 KMILKGVSGAVSPG-----ELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFY 123 (604)
Q Consensus 49 ~~iL~~vs~~i~~G-----e~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~ 123 (604)
+.-+.+..+.|+.| |++..+|+||.|||||+++++|++++.. .|+|- .-.++|=||.-.--
T Consensus 349 ~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~----~~e~p----------~lnVSykpqkispK 414 (592)
T KOG0063|consen 349 KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDE----GGEIP----------VLNVSYKPQKISPK 414 (592)
T ss_pred eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCc----cCccc----------ccceeccccccCcc
Confidence 44566777777766 6789999999999999999999886421 23332 12477778865443
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeC
Q 046786 124 PHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDE 203 (604)
Q Consensus 124 ~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDE 203 (604)
..-||++.+.--. | +.-...+-+.++++-|.+++..| +.+.+|||||+|||++|..|=..+++++.||
T Consensus 415 ~~~tvR~ll~~kI--r-----~ay~~pqF~~dvmkpL~ie~i~d-----qevq~lSggelQRval~KOGGKpAdvYliDE 482 (592)
T KOG0063|consen 415 REGTVRQLLHTKI--R-----DAYMHPQFVNDVMKPLQIENIID-----QEVQGLSGGELQRVALALCLGKPADVYLIDE 482 (592)
T ss_pred ccchHHHHHHHHh--H-----hhhcCHHHHHhhhhhhhHHHHHh-----HHhhcCCchhhHHHHHHHhcCCCCceEEecC
Confidence 4458988775322 1 11112245778888888888776 5567999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCchHHHhhcCeEEEE
Q 046786 204 PTSGLDSTMAKKILVSLSKLA-EGGRTILMTIHQPASSLFYMFNKILLL 251 (604)
Q Consensus 204 PtsgLD~~~~~~i~~~l~~la-~~g~tvi~~~Hq~~~~i~~~~d~v~ll 251 (604)
|.+-||+..+...-+.+++.- +.++|-.++.||--- .-.++||+++.
T Consensus 483 psAylDSeQRi~AskvikRfilhakktafvVEhdfIm-aTYladrvivf 530 (592)
T KOG0063|consen 483 PSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIM-ATYLADRVIVF 530 (592)
T ss_pred chhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHH-HHhhcceeEEE
Confidence 999999999999999999875 567899999999643 33578888886
No 419
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.50 E-value=1.1e-14 Score=141.36 Aligned_cols=82 Identities=18% Similarity=0.086 Sum_probs=58.7
Q ss_pred CCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH-HHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEe
Q 046786 175 VRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKIL-VSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLS 252 (604)
Q Consensus 175 ~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~-~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~ 252 (604)
.+.+|+|++|...+.. .+.+|+++++|||++|+|+.....+. ..++.+.++ |.++|++||++ ++.+.+|+.--+
T Consensus 59 ~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v- 134 (185)
T smart00534 59 LSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGV- 134 (185)
T ss_pred ccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccc-
Confidence 4578888876433332 34599999999999999999887765 566777774 89999999997 467777753333
Q ss_pred cCCeEEEe
Q 046786 253 SDGSSLYF 260 (604)
Q Consensus 253 ~~G~~v~~ 260 (604)
..++....
T Consensus 135 ~~~~~~~~ 142 (185)
T smart00534 135 RNLHMSAD 142 (185)
T ss_pred eEEEEEEE
Confidence 34444433
No 420
>PRK00064 recF recombination protein F; Reviewed
Probab=99.50 E-value=1.1e-12 Score=140.15 Aligned_cols=79 Identities=24% Similarity=0.315 Sum_probs=65.4
Q ss_pred cCCCcCHHHHHHHHHHHHHh---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhh
Q 046786 174 LVRGLSGGERKRISIGQELL---------INPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYM 244 (604)
Q Consensus 174 ~~~~LSgGerqRvsia~~L~---------~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~ 244 (604)
....+|+||+|++.+|+.|+ .+|+|++||||+++||+..+..+++.++++ +..+++|+|++. .+...
T Consensus 270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~-~~~~~ 345 (361)
T PRK00064 270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLE-DLADL 345 (361)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChh-hhhhh
Confidence 45689999999999999886 699999999999999999999999998764 457889999864 34444
Q ss_pred c--CeEEEEecCCeE
Q 046786 245 F--NKILLLSSDGSS 257 (604)
Q Consensus 245 ~--d~v~ll~~~G~~ 257 (604)
+ ++++.+ .+|++
T Consensus 346 ~~~~~i~~v-~~G~i 359 (361)
T PRK00064 346 LENAKIFHV-EQGKI 359 (361)
T ss_pred hccCcEEEE-eCCEE
Confidence 3 467888 78886
No 421
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.45 E-value=5.1e-13 Score=132.52 Aligned_cols=132 Identities=17% Similarity=0.212 Sum_probs=88.3
Q ss_pred ceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCC-CCCH
Q 046786 50 MILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYP-HLTV 128 (604)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~-~lTv 128 (604)
.+=+|+++.=..+..++|.||||+|||||||.++.... ....|...... .-.++|..|....+. ..++
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~----la~~G~~v~a~-------~~~~~~~d~i~~~l~~~~si 85 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVF----LAHIGSFVPAD-------SATIGLVDKIFTRMSSRESV 85 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHH----HHhCCCeeEcC-------CcEEeeeeeeeeeeCCccCh
Confidence 34555555422238999999999999999999984210 01245443221 224677777532211 1111
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcC--HHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 046786 129 AETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLS--GGERKRISIGQELLINPSLLFLDEPTS 206 (604)
Q Consensus 129 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS--gGerqRvsia~~L~~~p~illLDEPts 206 (604)
.+ ++| .-|.||++++++++.+|+++++|||++
T Consensus 86 ~~----------------------------------------------~~S~f~~el~~l~~~l~~~~~~slvllDE~~~ 119 (213)
T cd03281 86 SS----------------------------------------------GQSAFMIDLYQVSKALRLATRRSLVLIDEFGK 119 (213)
T ss_pred hh----------------------------------------------ccchHHHHHHHHHHHHHhCCCCcEEEeccccC
Confidence 11 122 357799999999999999999999999
Q ss_pred CCCHHHHHHH-HHHHHHHHhC---CCEEEEEecCCc
Q 046786 207 GLDSTMAKKI-LVSLSKLAEG---GRTILMTIHQPA 238 (604)
Q Consensus 207 gLD~~~~~~i-~~~l~~la~~---g~tvi~~~Hq~~ 238 (604)
|+|+.....+ ...++++.+. +.++|++||++.
T Consensus 120 gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~ 155 (213)
T cd03281 120 GTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHE 155 (213)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHH
Confidence 9999765554 5688888764 358999999975
No 422
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.45 E-value=1.3e-13 Score=159.65 Aligned_cols=137 Identities=24% Similarity=0.268 Sum_probs=95.8
Q ss_pred cceeec-----eEEEEecC-eEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCC-
Q 046786 49 KMILKG-----VSGAVSPG-ELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNV- 121 (604)
Q Consensus 49 ~~iL~~-----vs~~i~~G-e~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~- 121 (604)
++++++ +|+.+.+| +.++|.||||+|||||||+|+|..- .+..| .+||....
T Consensus 303 hPll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l----~aq~G-----------------~~Vpa~~~~ 361 (771)
T TIGR01069 303 HPLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLAL----MFQSG-----------------IPIPANEHS 361 (771)
T ss_pred CceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHH----HHHhC-----------------CCccCCccc
Confidence 456655 78889888 9999999999999999999998621 01122 13333321
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEE
Q 046786 122 FYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFL 201 (604)
Q Consensus 122 l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illL 201 (604)
.++ +.+.+. . + ...++ .+ . ...+++|+|+++++.|++.+ .+|+++++
T Consensus 362 ~~~---~~d~i~--~--~----i~~~~---si---~---------------~~LStfS~~m~~~~~il~~~-~~~sLvLl 408 (771)
T TIGR01069 362 EIP---YFEEIF--A--D----IGDEQ---SI---E---------------QNLSTFSGHMKNISAILSKT-TENSLVLF 408 (771)
T ss_pred ccc---chhhee--e--e----cChHh---HH---h---------------hhhhHHHHHHHHHHHHHHhc-CCCcEEEe
Confidence 111 111110 0 0 00100 00 0 12458999999999998876 89999999
Q ss_pred eCCCCCCCHHHHHHH-HHHHHHHHhCCCEEEEEecCCch
Q 046786 202 DEPTSGLDSTMAKKI-LVSLSKLAEGGRTILMTIHQPAS 239 (604)
Q Consensus 202 DEPtsgLD~~~~~~i-~~~l~~la~~g~tvi~~~Hq~~~ 239 (604)
|||++|+|+.....+ ...++.+++.|.++|++||++..
T Consensus 409 DE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL 447 (771)
T TIGR01069 409 DELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKEL 447 (771)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHH
Confidence 999999999999998 57888888889999999999653
No 423
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.44 E-value=5.4e-14 Score=139.96 Aligned_cols=88 Identities=25% Similarity=0.427 Sum_probs=65.8
Q ss_pred HHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 046786 151 LHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELL----INPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG 226 (604)
Q Consensus 151 ~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~----~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~ 226 (604)
+.+.+.++..++.. ..+|||||.+++||.-|+ ..+++++||||.++||...+..+.++|+++.+
T Consensus 121 ~~~~~~l~~~~i~~-----------~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~- 188 (220)
T PF02463_consen 121 KDLEELLPEVGISP-----------EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK- 188 (220)
T ss_dssp HHHHHHHHCTTTTT-----------TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-
T ss_pred cccccccccccccc-----------cccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 34556666665543 289999999999997664 46789999999999999999999999999875
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEe
Q 046786 227 GRTILMTIHQPASSLFYMFNKILLLS 252 (604)
Q Consensus 227 g~tvi~~~Hq~~~~i~~~~d~v~ll~ 252 (604)
+.=+|++||++ .++..+|+.+.+.
T Consensus 189 ~~Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 189 QSQFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp TSEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred ccccccccccc--ccccccccccccc
Confidence 46789999996 5788999988763
No 424
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.41 E-value=3.1e-13 Score=118.33 Aligned_cols=72 Identities=21% Similarity=0.128 Sum_probs=60.7
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----hccccEEEEecCCCCCC
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----EVKRRTGFVAQNNVFYP 124 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~ 124 (604)
+.+|+++++.+++||+++|+||||||||||++++. +|++.++|.++.. ..++.++|++|+ ++.
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-----------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~ 68 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI-----------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLE 68 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-----------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cch
Confidence 46899999999999999999999999999999985 4889999998843 345667888887 443
Q ss_pred CCCHHHHHHH
Q 046786 125 HLTVAETLVF 134 (604)
Q Consensus 125 ~lTv~e~l~f 134 (604)
-|++|||.+
T Consensus 69 -~ti~~Ni~~ 77 (107)
T cd00820 69 -IRLRLNIFL 77 (107)
T ss_pred -hhHHhhcee
Confidence 489999987
No 425
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.40 E-value=4.5e-13 Score=139.81 Aligned_cols=174 Identities=27% Similarity=0.366 Sum_probs=120.6
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEE------ECCEeCChhccc------cEEEEecCCCCCCC--
Q 046786 60 SPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHIT------YNGKQFSAEVKR------RTGFVAQNNVFYPH-- 125 (604)
Q Consensus 60 ~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~------~~G~~~~~~~~~------~i~yv~Q~~~l~~~-- 125 (604)
+||++.+++|.||-||||-|++|+|..++.....+.+-.. +.|-++..-+.+ +.-.=||.-..+|.
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 5899999999999999999999999987531111111111 011111000000 00001111111110
Q ss_pred -CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 046786 126 -LTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEP 204 (604)
Q Consensus 126 -lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEP 204 (604)
.+|.+++. +...++..+++++.+.|.+..+ +.+..|||||.||.+||.+-+.+.++.++|||
T Consensus 178 k~~v~~~l~------------~~~~r~~~~~~~~~~~L~~~~~-----re~~~lsggelqrfaia~~~vq~advyMFDEp 240 (592)
T KOG0063|consen 178 KGTVGSLLD------------RKDERDNKEEVCDQLDLNNLLD-----REVEQLSGGELQRFAIAMVCVQKADVYMFDEP 240 (592)
T ss_pred HHHHHHHHH------------HHhhcccHHHHHHHHHHhhHHH-----hhhhhcccchhhhhhhhhhhhhhcceeEecCC
Confidence 12333221 2222335677888888887776 45669999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEE
Q 046786 205 TSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLL 251 (604)
Q Consensus 205 tsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll 251 (604)
.+-||...+..-...|+.+...++=||++.||.+ .+-.+.|-+..|
T Consensus 241 SsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLs-VLDylSDFiCcL 286 (592)
T KOG0063|consen 241 SSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLS-VLDYLSDFICCL 286 (592)
T ss_pred cccchHHHhhhHHHHHHHhhCCCCeEEEEEeech-HHHhhhcceeEE
Confidence 9999999999999999999988899999999986 677788988888
No 426
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.38 E-value=3.2e-12 Score=127.39 Aligned_cols=135 Identities=18% Similarity=0.190 Sum_probs=89.9
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLT 127 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lT 127 (604)
++.+.+|+++.+++|++++|.||||+||||+|+++++..- .+..|.....- . -.++|..|- +..+.
T Consensus 17 ~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~----la~~G~~v~a~-~------~~~~~~~~i---~~~~~ 82 (222)
T cd03287 17 KSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITI----MAQIGSFVPAS-S------ATLSIFDSV---LTRMG 82 (222)
T ss_pred CCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHH----HHhCCCEEEcC-c------eEEeccceE---EEEec
Confidence 3568999999999999999999999999999999999421 13456543221 1 123333221 11111
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcC--HHHHHHHHHHHHHhhCCCeEEEeCCC
Q 046786 128 VAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLS--GGERKRISIGQELLINPSLLFLDEPT 205 (604)
Q Consensus 128 v~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS--gGerqRvsia~~L~~~p~illLDEPt 205 (604)
..|++. .++| ..|-+|++-...-+++|+++++|||.
T Consensus 83 ~~d~~~------------------------------------------~~~StF~~e~~~~~~il~~~~~~sLvllDE~~ 120 (222)
T cd03287 83 ASDSIQ------------------------------------------HGMSTFMVELSETSHILSNCTSRSLVILDELG 120 (222)
T ss_pred Cccccc------------------------------------------cccchHHHHHHHHHHHHHhCCCCeEEEEccCC
Confidence 111110 0111 23455555555567789999999999
Q ss_pred CCCCHHHHHHH-HHHHHHHHhC-CCEEEEEecCCc
Q 046786 206 SGLDSTMAKKI-LVSLSKLAEG-GRTILMTIHQPA 238 (604)
Q Consensus 206 sgLD~~~~~~i-~~~l~~la~~-g~tvi~~~Hq~~ 238 (604)
+|.|+.....+ ...++.+.+. +.++|++||++.
T Consensus 121 ~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~ 155 (222)
T cd03287 121 RGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPS 155 (222)
T ss_pred CCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHH
Confidence 99987777664 5677777775 889999999975
No 427
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.35 E-value=1e-12 Score=130.27 Aligned_cols=44 Identities=20% Similarity=0.384 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q 046786 182 ERKRISIGQELLINPSLLFLDEPT-----SGLDSTMAKKILVSLSKLAE 225 (604)
Q Consensus 182 erqRvsia~~L~~~p~illLDEPt-----sgLD~~~~~~i~~~l~~la~ 225 (604)
|++++.||++++.+|+++++|||| +|||+.+...+.+.++++++
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999 99999999999999999975
No 428
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.33 E-value=1.7e-10 Score=116.02 Aligned_cols=119 Identities=17% Similarity=0.256 Sum_probs=102.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 046786 440 YRLSSYIMAKTAGDFVMELVLPTVFVIITYWMGGLKARVINFLSTLAATLYTALVAQSLGLAVGALVLNQRKAGTIATTL 519 (604)
Q Consensus 440 Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~F~~~~~~~~l~~~~~~s~~~~i~a~~~~~~~A~~~~~~~ 519 (604)
.++..|+++|.+..++..++..+++..+.|++.+++. ..++..++..++..++..++|.++++..++.+.++.+.+++
T Consensus 87 ~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~~~~~i~~~~ 164 (236)
T TIGR01247 87 ASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSMEGFQIIMSML 164 (236)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3678999999999999999999998888888877553 34555555566677788999999999999999999999999
Q ss_pred HHHHHHHhhcccC--CchhhHHhhhhcCHHHHHHHHHHHHhcC
Q 046786 520 MLTFLLTGGFFVQ--DVPAFISWLEYLSFTHYSYKLLLMSQYN 560 (604)
Q Consensus 520 ~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~y~~~~l~~nef~ 560 (604)
..++..+||.+.| .+|.|++|+.+++|++|+.|++-..-.+
T Consensus 165 ~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~~~~ 207 (236)
T TIGR01247 165 MLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYYLAG 207 (236)
T ss_pred HHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHHHhC
Confidence 9999999999998 8999999999999999999996654443
No 429
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.29 E-value=2.7e-12 Score=149.13 Aligned_cols=82 Identities=22% Similarity=0.253 Sum_probs=64.9
Q ss_pred CCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEec
Q 046786 175 VRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILV-SLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSS 253 (604)
Q Consensus 175 ~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~-~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~ 253 (604)
.+++|+|++|++.|++++ ++|+++++|||++|+|+.....+.. +++.+.+.|.++|++||++.. .....|+..+.
T Consensus 388 lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el-~~~~~~~~~v~-- 463 (782)
T PRK00409 388 LSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKEL-KALMYNREGVE-- 463 (782)
T ss_pred hhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHH-HHHHhcCCCeE--
Confidence 458999999999999988 8999999999999999999888854 677787789999999999642 33334544443
Q ss_pred CCeEEEe
Q 046786 254 DGSSLYF 260 (604)
Q Consensus 254 ~G~~v~~ 260 (604)
++.+.+.
T Consensus 464 ~~~~~~d 470 (782)
T PRK00409 464 NASVEFD 470 (782)
T ss_pred EEEEEEe
Confidence 4555553
No 430
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.26 E-value=1.1e-11 Score=140.11 Aligned_cols=76 Identities=22% Similarity=0.366 Sum_probs=69.0
Q ss_pred CCcCHHHHHHHHHHHHHhhC----CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEE
Q 046786 176 RGLSGGERKRISIGQELLIN----PSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLL 251 (604)
Q Consensus 176 ~~LSgGerqRvsia~~L~~~----p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll 251 (604)
+.+||||+||++||++++.. |+++++||||+|||+.++..+.+.|+++++ |++||++||+|. +...+|+++++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEE
Confidence 57899999999999999985 699999999999999999999999999985 899999999985 44689999999
Q ss_pred ecCC
Q 046786 252 SSDG 255 (604)
Q Consensus 252 ~~~G 255 (604)
.+|
T Consensus 516 -~k~ 518 (563)
T TIGR00634 516 -EKE 518 (563)
T ss_pred -EEc
Confidence 554
No 431
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.25 E-value=1.5e-10 Score=125.92 Aligned_cols=174 Identities=19% Similarity=0.218 Sum_probs=115.3
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeC---Ch---------hccccEEE
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQF---SA---------EVKRRTGF 115 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~---~~---------~~~~~i~y 115 (604)
+..+++++ +.+.+|+.++|+|+||+|||||+++|+|..+ ++.|.|.+.|+.- .+ .+++.+++
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~-----~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~v 218 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTS-----ADLNVIALIGERGREVREFIERDLGPEGLKRSIVV 218 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccC-----CCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEE
Confidence 35689999 9999999999999999999999999999875 4689999965443 21 24567899
Q ss_pred EecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCH-HHHHHHHHHHHHhh
Q 046786 116 VAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSG-GERKRISIGQELLI 194 (604)
Q Consensus 116 v~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg-GerqRvsia~~L~~ 194 (604)
|.+.+.-. -.+....+.+ -.+.|.+..-|- |.++- ...++- -|-+ |++.
T Consensus 219 v~~~~~~~---~~r~~~~~~a--------------~~iAEyfr~~g~----~Vll~---~Dsltr~A~A~-----rEis- 268 (438)
T PRK07721 219 VATSDQPA---LMRIKGAYTA--------------TAIAEYFRDQGL----NVMLM---MDSVTRVAMAQ-----REIG- 268 (438)
T ss_pred EECCCCCH---HHHHHHHHHH--------------HHHHHHHHHCCC----cEEEE---EeChHHHHHHH-----HHHH-
Confidence 98755321 0111111111 012223322232 11110 011210 1111 1111
Q ss_pred CCCeEEEeCC--CCCCCHHHHHHHHHHHHHHHh--CCC-----EEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhh
Q 046786 195 NPSLLFLDEP--TSGLDSTMAKKILVSLSKLAE--GGR-----TILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGED 265 (604)
Q Consensus 195 ~p~illLDEP--tsgLD~~~~~~i~~~l~~la~--~g~-----tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~ 265 (604)
+.+.|| |+|+|+.....+.+.++++.+ .|. ||++.+||.++ ..+|++..+ .+|+++..++..+
T Consensus 269 ----l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e---~i~d~v~~i-~dG~Ivls~~la~ 340 (438)
T PRK07721 269 ----LAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE---PIADTVRGI-LDGHFVLDRQLAN 340 (438)
T ss_pred ----HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc---hhhhhEEEe-cCEEEEEeccHHH
Confidence 123464 789999999999999999984 575 99999999874 679999999 8999999997653
No 432
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.24 E-value=1.4e-11 Score=139.44 Aligned_cols=80 Identities=25% Similarity=0.343 Sum_probs=70.1
Q ss_pred cCCCcCHHHHHHHHHHHHHh----------hCCCeEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHH
Q 046786 174 LVRGLSGGERKRISIGQELL----------INPSLLFLDEPT-SGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLF 242 (604)
Q Consensus 174 ~~~~LSgGerqRvsia~~L~----------~~p~illLDEPt-sgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~ 242 (604)
.+..||||||||++||++|+ .+|++++||||| ++||+.+...+.+.|+++ .|.|||++||++. ..
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~--~~ 540 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDH--DP 540 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchh--ch
Confidence 45789999999999999887 599999999998 789999999999999998 5899999999964 45
Q ss_pred hhcCeEEEEecCCeE
Q 046786 243 YMFNKILLLSSDGSS 257 (604)
Q Consensus 243 ~~~d~v~ll~~~G~~ 257 (604)
..+|+++.|.+.|+.
T Consensus 541 ~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 541 QKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhcEEEEEEECCe
Confidence 779999999544554
No 433
>PRK10869 recombination and repair protein; Provisional
Probab=99.23 E-value=2.6e-11 Score=136.24 Aligned_cols=75 Identities=23% Similarity=0.348 Sum_probs=68.3
Q ss_pred CCcCHHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEE
Q 046786 176 RGLSGGERKRISIGQELLI----NPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLL 251 (604)
Q Consensus 176 ~~LSgGerqRvsia~~L~~----~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll 251 (604)
+.+||||+||++||++++. +|+++++|||++|||..++..+.+.|+++++ +.+||++||+|. +...+|+.+.+
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v 505 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFV 505 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEE
Confidence 4689999999999999997 5899999999999999999999999999975 699999999985 45899999999
Q ss_pred ecC
Q 046786 252 SSD 254 (604)
Q Consensus 252 ~~~ 254 (604)
.+
T Consensus 506 -~k 507 (553)
T PRK10869 506 -SK 507 (553)
T ss_pred -ec
Confidence 44
No 434
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.22 E-value=2.9e-11 Score=146.04 Aligned_cols=81 Identities=27% Similarity=0.299 Sum_probs=73.7
Q ss_pred CccCCCcCHHHHHHHHHHHHHhh----------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHH
Q 046786 172 GRLVRGLSGGERKRISIGQELLI----------NPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSL 241 (604)
Q Consensus 172 ~~~~~~LSgGerqRvsia~~L~~----------~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i 241 (604)
++.+++|||||++||+||++|+. +|++||+||||+|||+.+...+++.|+++...|++|++++|++. ..
T Consensus 945 ~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~-~~ 1023 (1042)
T TIGR00618 945 VRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPE-FR 1023 (1042)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HH
Confidence 35678999999999999999986 79999999999999999999999999999888999999999975 56
Q ss_pred HhhcCeEEEEecC
Q 046786 242 FYMFNKILLLSSD 254 (604)
Q Consensus 242 ~~~~d~v~ll~~~ 254 (604)
...+|+|.++ +.
T Consensus 1024 ~~~~~~i~v~-~~ 1035 (1042)
T TIGR00618 1024 ERIPHRILVK-KT 1035 (1042)
T ss_pred HhhCCEEEEE-EC
Confidence 7788999998 43
No 435
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.22 E-value=1.2e-10 Score=130.51 Aligned_cols=138 Identities=22% Similarity=0.381 Sum_probs=104.7
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHH------HHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCC-
Q 046786 124 PHLTVAETLVFTALLRLPNSLKREEKVLHAEAV------INQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINP- 196 (604)
Q Consensus 124 ~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~------l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p- 196 (604)
..+++.|.+.|...+.+... .....+..+.++ |-.+||...- -++...+|||||.||+-+|..+=++=
T Consensus 427 ~~msi~~~~~f~~~l~l~~~-~~~ia~~ilkei~~RL~fL~~VGL~YLt----L~R~a~TLSGGEaQRIRLAtqiGS~Lt 501 (935)
T COG0178 427 SEMSIADALEFFENLKLSEK-EKKIAEPILKEIKERLGFLVDVGLGYLT----LSRSAGTLSGGEAQRIRLATQIGSGLT 501 (935)
T ss_pred hhccHHHHHHHHHhCCCchh-hHHHHHHHHHHHHHHHHHHHHcCcCccc----ccccCCCcChhHHHHHHHHHHhcccce
Confidence 35788888888776653211 111112222333 3345665421 13667899999999999999997653
Q ss_pred -CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEe-----cCCeEEEecChhhHHH
Q 046786 197 -SLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLS-----SDGSSLYFGKGEDVIN 268 (604)
Q Consensus 197 -~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~-----~~G~~v~~G~~~~~~~ 268 (604)
=+++||||+-||-+.....+++.|++|++.|.|+|++.||+ +....+|+++=+. .+|++++.|+++++++
T Consensus 502 GVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 502 GVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred eeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 36799999999999999999999999999999999999996 5678899999874 4799999999999864
No 436
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.21 E-value=4.2e-11 Score=120.24 Aligned_cols=150 Identities=19% Similarity=0.255 Sum_probs=93.4
Q ss_pred EEEecCeEEEEECCCCCcHHHH-HHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHH
Q 046786 57 GAVSPGELLAILGPSGCGKTTL-LTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTVAETLVFT 135 (604)
Q Consensus 57 ~~i~~Ge~~aIlGpsGaGKSTL-L~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~f~ 135 (604)
+-+++|++++|.|||||||||| ++.+.+..++ | ..+.|+..+ .|..+.+...
T Consensus 19 ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~-------g--------------~~~~yi~~e------~~~~~~~~~~ 71 (230)
T PRK08533 19 GGIPAGSLILIEGDESTGKSILSQRLAYGFLQN-------G--------------YSVSYVSTQ------LTTTEFIKQM 71 (230)
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhC-------C--------------CcEEEEeCC------CCHHHHHHHH
Confidence 4589999999999999999999 7888886541 2 123455432 2555555554
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHh----hCCCeEEEeCCCCCC---
Q 046786 136 ALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELL----INPSLLFLDEPTSGL--- 208 (604)
Q Consensus 136 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~----~~p~illLDEPtsgL--- 208 (604)
..+.. .. ++.... +.-...+ . ...+|+++.++-.+.+.+- .+|+++++||||+++
T Consensus 72 ~~~g~--~~---------~~~~~~-~~l~~~~-----~-~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~ 133 (230)
T PRK08533 72 MSLGY--DI---------NKKLIS-GKLLYIP-----V-YPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISND 133 (230)
T ss_pred HHhCC--ch---------HHHhhc-CcEEEEE-----e-cccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCC
Confidence 33221 11 111110 1000001 0 1246666655544444332 369999999999999
Q ss_pred -CHHHHHHHHHHHHHHHhCCCEEEEEecCCch------HHHhhcCeEEEE
Q 046786 209 -DSTMAKKILVSLSKLAEGGRTILMTIHQPAS------SLFYMFNKILLL 251 (604)
Q Consensus 209 -D~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~------~i~~~~d~v~ll 251 (604)
|+.....+.+.++++++.|.|+++++|+... .+..++|.++.|
T Consensus 134 ~d~~~~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L 183 (230)
T PRK08533 134 ASEVAVNDLMAFFKRISSLNKVIILTANPKELDESVLTILRTAATMLIRL 183 (230)
T ss_pred cchHHHHHHHHHHHHHHhCCCEEEEEecccccccccceeEEEeeeEEEEE
Confidence 8888889999999998888887776664321 124556777777
No 437
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.19 E-value=2.1e-11 Score=121.11 Aligned_cols=64 Identities=30% Similarity=0.522 Sum_probs=54.8
Q ss_pred CCCcCHHHHHHHHHHHHHhhCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 046786 175 VRGLSGGERKRISIGQELLINP---SLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPA 238 (604)
Q Consensus 175 ~~~LSgGerqRvsia~~L~~~p---~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~ 238 (604)
...+|.|+||.+.++..|...+ .++++|||-++|+|..+..+++.|++.++.+.-||+|||.|.
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 4567999999999999988776 899999999999999999999999988876789999999984
No 438
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.19 E-value=2.7e-11 Score=120.43 Aligned_cols=137 Identities=18% Similarity=0.200 Sum_probs=90.4
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLT 127 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lT 127 (604)
++.+-+|+++..++|++++|.||||+||||+++.+++..-- ... |-.+..+ ...++++ +.++..+.
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~l----a~~------G~~vpa~-~~~i~~~---~~i~~~~~ 81 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIM----AQM------GMDVPAK-SMRLSLV---DRIFTRIG 81 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHH----HHc------CCccCcc-ccEeccc---cEEEEecC
Confidence 45789999999999999999999999999999999985320 001 1111111 0112211 22222222
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 046786 128 VAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSG 207 (604)
Q Consensus 128 v~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsg 207 (604)
..|++..+ ++ .+. .|-+|++-....+++|+++++|||.+|
T Consensus 82 ~~d~~~~~--------------------------~S-------------tF~-~e~~~~~~il~~~~~~sLvLlDE~~~G 121 (218)
T cd03286 82 ARDDIMKG--------------------------ES-------------TFM-VELSETANILRHATPDSLVILDELGRG 121 (218)
T ss_pred cccccccC--------------------------cc-------------hHH-HHHHHHHHHHHhCCCCeEEEEecccCC
Confidence 22222100 00 111 355555555555678999999999999
Q ss_pred CCHHHHHHHHHH-HHHHHhC-CCEEEEEecCCc
Q 046786 208 LDSTMAKKILVS-LSKLAEG-GRTILMTIHQPA 238 (604)
Q Consensus 208 LD~~~~~~i~~~-l~~la~~-g~tvi~~~Hq~~ 238 (604)
+|+.....+... ++.+.+. +.++|++||++.
T Consensus 122 t~~~dg~~la~ail~~L~~~~~~~~i~~TH~~e 154 (218)
T cd03286 122 TSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHS 154 (218)
T ss_pred CCchHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 999999998888 7888775 899999999964
No 439
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.18 E-value=9.5e-11 Score=118.71 Aligned_cols=179 Identities=18% Similarity=0.221 Sum_probs=104.3
Q ss_pred EEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEE--CCEe-CCh-hccc---cEEEEecCCCCCCCC---
Q 046786 57 GAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITY--NGKQ-FSA-EVKR---RTGFVAQNNVFYPHL--- 126 (604)
Q Consensus 57 ~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~--~G~~-~~~-~~~~---~i~yv~Q~~~l~~~l--- 126 (604)
..+.+||.++|+||+|+|||||++.|.+....... +..+.+ -|.+ .+. ++.+ .+-.+.+-+. .+..
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~f---dv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-~~~~~~~ 86 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHP---EVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-PPERHVQ 86 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccC---CeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-CHHHHHH
Confidence 46789999999999999999999999997752100 122221 2221 111 1211 1223333332 1110
Q ss_pred CHHHHHHHHHHhcC-CCCC--CHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHH--------HHHHHHHHHHhhC
Q 046786 127 TVAETLVFTALLRL-PNSL--KREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGE--------RKRISIGQELLIN 195 (604)
Q Consensus 127 Tv~e~l~f~~~~~~-~~~~--~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe--------rqRvsia~~L~~~ 195 (604)
..+.-+..+...+. .... --++. .+ +.+..++.+| ...+.+|||+ +||+++|+++..+
T Consensus 87 ~~~~~~~~a~~~~~~G~~vll~iDei-~r---------~a~a~~ev~~-~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~ 155 (249)
T cd01128 87 VAEMVLEKAKRLVEHGKDVVILLDSI-TR---------LARAYNTVVP-PSGKILSGGVDANALHKPKRFFGAARNIEEG 155 (249)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECH-HH---------hhhhhhhccc-cCCCCCCCCcChhhhhhhHHHHHHhcCCCCC
Confidence 00111111111110 0000 00000 01 1122233333 3345689999 9999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHH-HHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeE
Q 046786 196 PSLLFLDEPTSGLDSTMAKK-ILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSS 257 (604)
Q Consensus 196 p~illLDEPtsgLD~~~~~~-i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~ 257 (604)
++|.+| ||+.+|+.+... ++ +.++...+.|.|+.+|+.. ....+|.|.+| +.|+.
T Consensus 156 gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la--~~~~~paI~vl-~s~sr 211 (249)
T cd01128 156 GSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLA--ERRIFPAIDIL-KSGTR 211 (249)
T ss_pred CceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHh--hCCCCCeEEEc-CCCCc
Confidence 999999 999999655543 54 5555546789999999975 35789999999 78876
No 440
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.16 E-value=3.5e-10 Score=109.16 Aligned_cols=79 Identities=19% Similarity=0.101 Sum_probs=65.4
Q ss_pred ccCCCcCHHHHH------HHHHHHHHhhCCCeEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCCEEEEEecCCch----
Q 046786 173 RLVRGLSGGERK------RISIGQELLINPSLLFLDEPTSGLD---STMAKKILVSLSKLAEGGRTILMTIHQPAS---- 239 (604)
Q Consensus 173 ~~~~~LSgGerq------Rvsia~~L~~~p~illLDEPtsgLD---~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~---- 239 (604)
..+..+|+|++| +.........+|+++++|||++.+| ......+.+.++.+++.|.|+|+++|+...
T Consensus 67 ~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~ 146 (187)
T cd01124 67 ADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTG 146 (187)
T ss_pred cCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCcc
Confidence 445689999998 4444555667999999999999999 888888899999998889999999998653
Q ss_pred ----HHHhhcCeEEEE
Q 046786 240 ----SLFYMFNKILLL 251 (604)
Q Consensus 240 ----~i~~~~d~v~ll 251 (604)
.+..++|.++.|
T Consensus 147 ~~~~~~~~~aD~ii~l 162 (187)
T cd01124 147 FGGGDVEYLVDGVIRL 162 (187)
T ss_pred cCcCceeEeeeEEEEE
Confidence 267889999988
No 441
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.13 E-value=3.5e-10 Score=106.95 Aligned_cols=68 Identities=28% Similarity=0.470 Sum_probs=55.2
Q ss_pred ccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 046786 170 IGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPA 238 (604)
Q Consensus 170 vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~ 238 (604)
+|.+.....|-||-=---+. .=.++-.+++||||-++|.+.-+.+++..|+++++.|.-+|+.||.|-
T Consensus 122 ~~~~sLh~~SHGEsf~~i~~-~rf~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi 189 (233)
T COG3910 122 YGGRSLHHMSHGESFLAIFH-NRFNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI 189 (233)
T ss_pred cCCcchhhhccchHHHHHHH-HHhccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh
Confidence 34445567888986433333 334667899999999999999999999999999999999999999983
No 442
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=99.12 E-value=1.2e-09 Score=107.76 Aligned_cols=117 Identities=18% Similarity=0.053 Sum_probs=99.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046786 441 RLSSYIMAKTAGDFVMELVLPTVFVIITYWMGGLKARVINFLSTLAATLYTALVAQSLGLAVGALVLNQRKAGTIATTLM 520 (604)
Q Consensus 441 ~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~F~~~~~~~~l~~~~~~s~~~~i~a~~~~~~~A~~~~~~~~ 520 (604)
+.+.++++|.+..++..+++.+++..+.|++.|++.. +++.+++.+++..++..+++.++++++++...+. ..+.+
T Consensus 58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~~--~~~~~ 133 (208)
T TIGR03062 58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRFL--ALVLL 133 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHH--HHHHH
Confidence 5567899999999999999999999999999999864 5677777788888999999999999998765443 44455
Q ss_pred HHHHHHhhcccC--CchhhHHhhhhcCHHHHHHHHHHHHhcCC
Q 046786 521 LTFLLTGGFFVQ--DVPAFISWLEYLSFTHYSYKLLLMSQYNP 561 (604)
Q Consensus 521 ~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~y~~~~l~~nef~~ 561 (604)
.+.++++|.+.| .+|.|++|+.+++|++|+.+++-...+++
T Consensus 134 ~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~ 176 (208)
T TIGR03062 134 VLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGG 176 (208)
T ss_pred HHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCC
Confidence 566777888888 89999999999999999999998777754
No 443
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=99.12 E-value=1.1e-08 Score=104.00 Aligned_cols=201 Identities=14% Similarity=0.182 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHHH-hcCchhHHHHHHHHHHHHHHHHHHhcCC-C--C----cchhhH-----HHHHHHHHHHHhHHHHH
Q 046786 352 WQHFSVLLRRDLKE-RRHDTFDGLKIGQILFLSIITGLVWWQS-S--T----DNIEDQ-----VGLLFFYSRQAGFFPLF 418 (604)
Q Consensus 352 ~~Q~~~l~~R~~~~-~r~~~~~~~~~~~~i~~~li~G~~f~~~-~--~----~~~~~~-----~g~lf~~~~~~~~~~~~ 418 (604)
|++++.+++|.++. .|++......+++-++.-+++|.+|-.. + . ++..+. .|.+-+.....++.
T Consensus 1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~--- 77 (253)
T TIGR03861 1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQ--- 77 (253)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHH---
Confidence 46889999999987 4555445556777777777777777432 1 0 110011 22222222211111
Q ss_pred HHHH-hhHhhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCcchHHHHHHHHHHHHHHHHHHHH
Q 046786 419 QALH-TFPLERMMLEKERSSGMYRLSSYIMAKTAGDFVMELVLPTVFVIITYWMGGLKARVINFLSTLAATLYTALVAQS 497 (604)
Q Consensus 419 ~~i~-~~~~er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~F~~~~~~~~l~~~~~~s 497 (604)
.+.. ...+|+..+.+=+...+ ++..+.++|++...-..+++.+++..+.++ .|.+.....++.....+++..++..+
T Consensus 78 ~~~~~~~~r~~g~~~~l~~~p~-~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~ 155 (253)
T TIGR03861 78 SSLSMVYDREMGSMRVLLTSPL-PRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGA 155 (253)
T ss_pred hhhHhHHhHhcCHHHHHhhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 1111 11223334444454444 778899999999988888876665554443 36655544444444445556677889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--Cc---hhhHHhhhhcCHHHHHHHHHHHH
Q 046786 498 LGLAVGALVLNQRKAGTIATTLMLTFLLTGGFFVQ--DV---PAFISWLEYLSFTHYSYKLLLMS 557 (604)
Q Consensus 498 ~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~i---p~~~~Wl~yiSp~~y~~~~l~~n 557 (604)
+|.++|+++++.+.+..+.++++.+++..+|.+.| .+ |.|++|+.+++|+.|..|++=..
T Consensus 156 lgl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~~ 220 (253)
T TIGR03861 156 LGLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRFA 220 (253)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHHH
Confidence 99999999999998888888888899999999876 34 89999999999999999988654
No 444
>PRK13695 putative NTPase; Provisional
Probab=99.11 E-value=4.2e-11 Score=114.91 Aligned_cols=80 Identities=18% Similarity=0.229 Sum_probs=65.1
Q ss_pred CCCcCHHHHHHHHHHHHHhhCCCeEEEeCC--CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEe
Q 046786 175 VRGLSGGERKRISIGQELLINPSLLFLDEP--TSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLS 252 (604)
Q Consensus 175 ~~~LSgGerqRvsia~~L~~~p~illLDEP--tsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~ 252 (604)
...+||+++.+..+++..+.+|+++++||| +.++| ..+.+.+.++.+.|+++|+++|+. .+....|++..+
T Consensus 76 ~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~- 148 (174)
T PRK13695 76 VVNLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSR- 148 (174)
T ss_pred EEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhcc-
Confidence 447999999999999999999999999995 33444 445677777767799999999983 456778999999
Q ss_pred cCCeEEEec
Q 046786 253 SDGSSLYFG 261 (604)
Q Consensus 253 ~~G~~v~~G 261 (604)
.+|+++..-
T Consensus 149 ~~~~i~~~~ 157 (174)
T PRK13695 149 PGGRVYELT 157 (174)
T ss_pred CCcEEEEEc
Confidence 899887663
No 445
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=99.10 E-value=2.3e-08 Score=101.86 Aligned_cols=199 Identities=14% Similarity=0.106 Sum_probs=129.4
Q ss_pred HHHHHHHHHHH-hcC-chhHHHHHHHHHHHHHHHHHHhcCC-CC-cchhhHH-----HHHHHHHHHHhHHHHHHHH-Hhh
Q 046786 355 FSVLLRRDLKE-RRH-DTFDGLKIGQILFLSIITGLVWWQS-ST-DNIEDQV-----GLLFFYSRQAGFFPLFQAL-HTF 424 (604)
Q Consensus 355 ~~~l~~R~~~~-~r~-~~~~~~~~~~~i~~~li~G~~f~~~-~~-~~~~~~~-----g~lf~~~~~~~~~~~~~~i-~~~ 424 (604)
...+.+|+++. +|+ +......+++-++.-+++|..+-.. +. .+ .+.. |.+-+.+++.+ .+... ..+
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g-~~y~~f~~pg~l~~~~~~~~---~~~~~~~~~ 82 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDG-VSYAAFLAAGMVATSAMTAS---TFETIYATF 82 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCC-CCHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 34566899876 455 4444556666666667777665432 11 11 1221 22222222111 11111 112
Q ss_pred Hh--hhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046786 425 PL--ERMMLEKERSSGMYRLSSYIMAKTAGDFVMELVLPTVFVIITYWMGGLKARVINFLSTLAATLYTALVAQSLGLAV 502 (604)
Q Consensus 425 ~~--er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~F~~~~~~~~l~~~~~~s~~~~i 502 (604)
.. |+..+.|-+..-. ++..+.++|++.+.-..++..++...+.+++ |..+. ...+..+..+++..++..++|.++
T Consensus 83 ~~~r~~g~~~~l~~~Pv-~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~~-g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~ 159 (253)
T TIGR01291 83 ARMRVTRTWEAMLYTPI-TVGDIVLGEVAWAATKASLAGTIIGVVTATL-GYIEW-WSLIYILPVIALTGLAFASLSMLV 159 (253)
T ss_pred HHHHHcccHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchh-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 3334444444444 7789999999999877777776655555443 44333 334444455566777778999999
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CchhhHHhhhhcCHHHHHHHHHHHHhcC
Q 046786 503 GALVLNQRKAGTIATTLMLTFLLTGGFFVQ--DVPAFISWLEYLSFTHYSYKLLLMSQYN 560 (604)
Q Consensus 503 ~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~y~~~~l~~nef~ 560 (604)
|++.++.+.+..+..++..+++.+||.+.| .+|.|++|+.+++|+.|+.|++-..-++
T Consensus 160 a~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~~~g 219 (253)
T TIGR01291 160 AALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPVMLG 219 (253)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHHHhC
Confidence 999999999999999999999999999998 8999999999999999999997665444
No 446
>PRK03918 chromosome segregation protein; Provisional
Probab=99.05 E-value=4.7e-10 Score=133.73 Aligned_cols=78 Identities=28% Similarity=0.341 Sum_probs=68.8
Q ss_pred ccCCCcCHHHHHH------HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcC
Q 046786 173 RLVRGLSGGERKR------ISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFN 246 (604)
Q Consensus 173 ~~~~~LSgGerqR------vsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d 246 (604)
..+..|||||+++ +++|++++.+|+++++||||+|||+.....+.+.|+.++..+.+||++||++. +...+|
T Consensus 784 ~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~--~~~~~d 861 (880)
T PRK03918 784 RPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEE--LKDAAD 861 (880)
T ss_pred CChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHH--HHHhCC
Confidence 4577899999995 55556788999999999999999999999999999998877889999999973 678899
Q ss_pred eEEEEe
Q 046786 247 KILLLS 252 (604)
Q Consensus 247 ~v~ll~ 252 (604)
+++.|.
T Consensus 862 ~~~~l~ 867 (880)
T PRK03918 862 YVIRVS 867 (880)
T ss_pred eEEEEE
Confidence 999994
No 447
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=99.03 E-value=2.2e-08 Score=100.63 Aligned_cols=129 Identities=12% Similarity=0.157 Sum_probs=95.5
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Q 046786 429 MMLEKERSSGMYRLSSYIMAKTAGDFVMELVLPTVFVIITYWMGGLKARVINFLSTLAATLYTALVAQSLGLAVGALVL- 507 (604)
Q Consensus 429 ~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~F~~~~~~~~l~~~~~~s~~~~i~a~~~- 507 (604)
..+.|-+..-. ++..|+++|.+..++..++..+++. +++++.|++..... +..++.+.+....+.+++.+++++.+
T Consensus 66 G~l~rl~~~P~-~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~ 142 (232)
T TIGR00025 66 GALKRLGATPL-PRLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGA-LTALTLGAVIIALGTALFAALGLVAGG 142 (232)
T ss_pred CHHHHHhcCCC-cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46666665555 7899999999988888777655554 55667788765332 23333344445556677777777764
Q ss_pred --CHHHHHHHHHHHHHHHHHHhhcccC--CchhhHHhhhhcCHHHHHHHHHHHHhcC
Q 046786 508 --NQRKAGTIATTLMLTFLLTGGFFVQ--DVPAFISWLEYLSFTHYSYKLLLMSQYN 560 (604)
Q Consensus 508 --~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~y~~~~l~~nef~ 560 (604)
+.+.+..++.++..++.++||.+.| .+|.|++|+.+++|++|+.+++-..-.+
T Consensus 143 ~~~~~~~~~i~~~~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~~~~ 199 (232)
T TIGR00025 143 TLQAEIVLAVANLVWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQAATV 199 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHHHcC
Confidence 4555578888888999999999999 8999999999999999999987655443
No 448
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.02 E-value=9.2e-10 Score=115.39 Aligned_cols=143 Identities=17% Similarity=0.203 Sum_probs=93.0
Q ss_pred eEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEe-CChhccccEEEEecCCCCCCCCCHHHHHH
Q 046786 55 VSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQ-FSAEVKRRTGFVAQNNVFYPHLTVAETLV 133 (604)
Q Consensus 55 vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~-~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~ 133 (604)
+++.+++|+.++|.||+|||||||+++|++..+ +..|.+.+.... +....+..+.++.+...-
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~-----~~~~iv~ied~~El~~~~~~~~~l~~~~~~~----------- 200 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP-----KDERIITIEDTREIFLPHPNYVHLFYSKGGQ----------- 200 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC-----ccccEEEEcCccccCCCCCCEEEEEecCCCC-----------
Confidence 456788999999999999999999999999885 235666664211 000001112221111000
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHH
Q 046786 134 FTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMA 213 (604)
Q Consensus 134 f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~ 213 (604)
+ ...++- .-.+..+|-.+|+++++|||.+
T Consensus 201 -------------------------------------~---~~~~~~----~~~l~~~Lr~~pd~ii~gE~r~------- 229 (308)
T TIGR02788 201 -------------------------------------G---LAKVTP----KDLLQSCLRMRPDRIILGELRG------- 229 (308)
T ss_pred -------------------------------------C---cCccCH----HHHHHHHhcCCCCeEEEeccCC-------
Confidence 0 001111 1135557788999999999996
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 214 KKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 214 ~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
.++.+.++.+...+.+++.|+|..+ .....||+..+ ..|++...|.+.+..
T Consensus 230 ~e~~~~l~a~~~g~~~~i~T~Ha~~--~~~~~~Rl~~l-~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 230 DEAFDFIRAVNTGHPGSITTLHAGS--PEEAFEQLALM-VKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHHHHHhcCCCeEEEEEeCCC--HHHHHHHHHHH-hhccccccCCCHHHH
Confidence 3456677777643346799999976 45668999988 788888888877665
No 449
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.02 E-value=8.1e-10 Score=133.12 Aligned_cols=77 Identities=32% Similarity=0.352 Sum_probs=66.9
Q ss_pred ccCCCcCHHHHHHHHHHHHHhh--------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhh
Q 046786 173 RLVRGLSGGERKRISIGQELLI--------NPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYM 244 (604)
Q Consensus 173 ~~~~~LSgGerqRvsia~~L~~--------~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~ 244 (604)
+.+++|||||++|++||++|+. +|++||+||||+|||+.+...+++.|+++++.|+||+++||.+ ++...
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~--~l~~~ 1022 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVE--AMKER 1022 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHH--HHHHh
Confidence 5678999999999999999996 8999999999999999999999999999998899999999974 33443
Q ss_pred c-CeEEEE
Q 046786 245 F-NKILLL 251 (604)
Q Consensus 245 ~-d~v~ll 251 (604)
. .+|.|-
T Consensus 1023 i~~qi~V~ 1030 (1047)
T PRK10246 1023 IPVQIKVK 1030 (1047)
T ss_pred ccceEEEE
Confidence 4 444444
No 450
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.01 E-value=1.2e-09 Score=101.95 Aligned_cols=64 Identities=19% Similarity=0.265 Sum_probs=48.5
Q ss_pred CcCHHHHHHHHHHHHHhhCCCeEEEeCCCC----------CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH
Q 046786 177 GLSGGERKRISIGQELLINPSLLFLDEPTS----------GLDSTMAKKILVSLSKLAEGGRTILMTIHQPASS 240 (604)
Q Consensus 177 ~LSgGerqRvsia~~L~~~p~illLDEPts----------gLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~ 240 (604)
..+.++.++...+.+...+|+++++|||++ +.|......+.+++....+.|.|+|+++|.+...
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 67 DPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 445666677888888899999999999994 4555555666666656555699999999987643
No 451
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.00 E-value=1.1e-08 Score=120.37 Aligned_cols=78 Identities=22% Similarity=0.296 Sum_probs=64.2
Q ss_pred hhCCCeEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCEEEEEecCCchH--------HHhhcCeEEEEecCCeEEEecCh
Q 046786 193 LINPSLLFLDEPTSGL-DSTMAKKILVSLSKLAEGGRTILMTIHQPASS--------LFYMFNKILLLSSDGSSLYFGKG 263 (604)
Q Consensus 193 ~~~p~illLDEPtsgL-D~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~--------i~~~~d~v~ll~~~G~~v~~G~~ 263 (604)
..+|+++++|||+.+| |+..+..+.+.++++++.|.+++++||+|... +.+.+|..++| .+|+....|..
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L-~n~~a~~~~~~ 728 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICL-PNGAAREPGTR 728 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEEC-CCccccccchH
Confidence 5799999999999999 79999999999999998899999999998643 23679999999 88888766633
Q ss_pred hhHHHHHHhCCC
Q 046786 264 EDVINYFAGIGY 275 (604)
Q Consensus 264 ~~~~~~f~~~g~ 275 (604)
++++..|+
T Consensus 729 ----~~~~~~gl 736 (818)
T PRK13830 729 ----EFYERIGF 736 (818)
T ss_pred ----HHHHHcCC
Confidence 34555553
No 452
>PRK01156 chromosome segregation protein; Provisional
Probab=98.94 E-value=2.5e-09 Score=127.77 Aligned_cols=81 Identities=23% Similarity=0.321 Sum_probs=68.6
Q ss_pred ccCCCcCHHHHHHHHH------HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hC-C-CEEEEEecCCchHHHh
Q 046786 173 RLVRGLSGGERKRISI------GQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLA-EG-G-RTILMTIHQPASSLFY 243 (604)
Q Consensus 173 ~~~~~LSgGerqRvsi------a~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la-~~-g-~tvi~~~Hq~~~~i~~ 243 (604)
..+..|||||++|++| |++++.+|++++|||||+|||+.....+.+.++... .. | .+||++||++. +..
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~ 874 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLS 874 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHH
Confidence 3578999999999976 488999999999999999999999999999998754 33 3 48999999975 457
Q ss_pred hcCeEEEEecCC
Q 046786 244 MFNKILLLSSDG 255 (604)
Q Consensus 244 ~~d~v~ll~~~G 255 (604)
.+|+++.+...|
T Consensus 875 ~~d~ii~~~~~~ 886 (895)
T PRK01156 875 VADVAYEVKKSS 886 (895)
T ss_pred hcCeEEEEEecC
Confidence 899999995444
No 453
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.92 E-value=4.9e-09 Score=113.39 Aligned_cols=155 Identities=19% Similarity=0.175 Sum_probs=108.5
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCH
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTV 128 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv 128 (604)
..+++++ +.+.+|+.++|+|+||+|||||+++|++..+ ++.|.|.+.|+.. .+|
T Consensus 144 iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~-----~~~gvI~~iGerg--------------------~ev 197 (432)
T PRK06793 144 IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK-----ADINVISLVGERG--------------------REV 197 (432)
T ss_pred CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCC-----CCeEEEEeCCCCc--------------------ccH
Confidence 4578885 9999999999999999999999999999875 4567666655431 356
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHh-------hCCCeEEE
Q 046786 129 AETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELL-------INPSLLFL 201 (604)
Q Consensus 129 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~-------~~p~illL 201 (604)
.|.+..... .-|+.+. ..+ ....+-|.|+|+|+..+...+ .++-++++
T Consensus 198 ~e~~~~~l~---------------------~~gl~~t--vvv--~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlil 252 (432)
T PRK06793 198 KDFIRKELG---------------------EEGMRKS--VVV--VATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMM 252 (432)
T ss_pred HHHHHHHhh---------------------hccccee--EEE--EECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEe
Confidence 665542211 1122110 111 234578999999999988877 68999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecC
Q 046786 202 DEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGK 262 (604)
Q Consensus 202 DEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~ 262 (604)
|+||++.|+. .++-..+.+....|.+..+.+|-+ .+++.+ -.. .+|.+...+.
T Consensus 253 DslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~--~L~ERa---g~~-~~GSiT~~~t 305 (432)
T PRK06793 253 DSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMK--KLLERS---GKT-QKGSITGIYT 305 (432)
T ss_pred cchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccch--hHHHHh---ccC-CCcceEEEEE
Confidence 9999999996 555555566654588888888843 344433 334 6787766654
No 454
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.92 E-value=4.7e-09 Score=103.06 Aligned_cols=56 Identities=18% Similarity=0.317 Sum_probs=42.5
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEE
Q 046786 187 SIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLL 251 (604)
Q Consensus 187 sia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll 251 (604)
.++++|..+|+++++|||. |..+.. .+.+.+..|..++.|+|.++. ....||++.+
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~----~~l~~a~~G~~v~~t~Ha~~~--~~~~~Rl~~l 121 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIR----LALTAAETGHLVMSTLHTNSA--AKTIDRIIDV 121 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHH----HHHHHHHcCCEEEEEecCCcH--HHHHhHHHhh
Confidence 4778899999999999996 555433 333455679999999999763 4667888776
No 455
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.92 E-value=1.4e-08 Score=102.25 Aligned_cols=160 Identities=20% Similarity=0.176 Sum_probs=97.5
Q ss_pred eeece-EEEEecCeEEEEECCCCCcHHHHHHHHHc-CCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCH
Q 046786 51 ILKGV-SGAVSPGELLAILGPSGCGKTTLLTALGG-RLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTV 128 (604)
Q Consensus 51 iL~~v-s~~i~~Ge~~aIlGpsGaGKSTLL~~L~g-~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv 128 (604)
-|+.+ .+=+++|.++.|.|++|+|||||...++- ..+ . .+.+.|+..+. +.
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-------~--------------g~~~~y~~~e~------~~ 65 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALK-------Q--------------GKKVYVITTEN------TS 65 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHh-------C--------------CCEEEEEEcCC------CH
Confidence 34443 45689999999999999999999988752 221 1 12244544432 23
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhh--CCCeEEEeCCCC
Q 046786 129 AETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLI--NPSLLFLDEPTS 206 (604)
Q Consensus 129 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~--~p~illLDEPts 206 (604)
.+.+.-...+. ..-. +.+. -|.....+... ......|.++++.+.....++. +|+++++||||+
T Consensus 66 ~~~~~~~~~~g----~~~~-------~~~~-~g~l~i~~~~~--~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~ 131 (234)
T PRK06067 66 KSYLKQMESVK----IDIS-------DFFL-WGYLRIFPLNT--EGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTI 131 (234)
T ss_pred HHHHHHHHHCC----CChh-------HHHh-CCCceEEeccc--cccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHH
Confidence 33332222111 1100 0000 01111111101 1122456788999999999997 999999999996
Q ss_pred C---CCHHHHHHHHHHHHHHHhCCCEEEEEecCCch------HHHhhcCeEEEE
Q 046786 207 G---LDSTMAKKILVSLSKLAEGGRTILMTIHQPAS------SLFYMFNKILLL 251 (604)
Q Consensus 207 g---LD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~------~i~~~~d~v~ll 251 (604)
. .|......+++.++.+++.|.|+++++|++.. .+..++|.++.|
T Consensus 132 ~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L 185 (234)
T PRK06067 132 FATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKL 185 (234)
T ss_pred HHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEE
Confidence 4 45555556666677777789999999998653 256677888877
No 456
>PRK15066 inner membrane transport permease; Provisional
Probab=98.90 E-value=4e-07 Score=92.96 Aligned_cols=203 Identities=14% Similarity=0.173 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHHHhcCch--hHHHHHHHHHHHHHHHHHHhcCC-CC-cchh--h--HHHHHHHHHHHHhHHHHHHHHH
Q 046786 351 WWQHFSVLLRRDLKERRHDT--FDGLKIGQILFLSIITGLVWWQS-ST-DNIE--D--QVGLLFFYSRQAGFFPLFQALH 422 (604)
Q Consensus 351 ~~~Q~~~l~~R~~~~~r~~~--~~~~~~~~~i~~~li~G~~f~~~-~~-~~~~--~--~~g~lf~~~~~~~~~~~~~~i~ 422 (604)
.|+-++.+.+|.++..+++. ....-+++.++..++.|.++-.. +. .+.. . -.|.+-+.....+.. .+..
T Consensus 6 ~~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~~y~~fl~pGll~~~~~~~~~~---~~~~ 82 (257)
T PRK15066 6 YWIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGFSYMQFIVPGLIMMSVITNSYS---NVAS 82 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 46778899999998755443 22234455556666666655321 11 1111 1 113332222221111 1112
Q ss_pred hhHhhh--HHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 046786 423 TFPLER--MMLEKERSSGMYRLSSYIMAKTAGDFVMELVLPTVFVIITYWMGGLKARVINFLSTLAATLYTALVAQSLGL 500 (604)
Q Consensus 423 ~~~~er--~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~F~~~~~~~~l~~~~~~s~~~ 500 (604)
.+..+| ..+.|=+... -++..+.+++++...-..++..++...+.+...|.+.. ....++..+++...+....|.
T Consensus 83 ~i~~~~~~~~~~~l~vtp-~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl 159 (257)
T PRK15066 83 SFFSAKFQRNIEELLVSP-VPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGL 159 (257)
T ss_pred HHHHHHHhhhHHHHHcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHH
Confidence 222333 1121212223 47788999999988777676666555555544466543 222233333333333344588
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CchhhHHhhhhcCHHHHHHHHHHHHhc
Q 046786 501 AVGALVLNQRKAGTIATTLMLTFLLTGGFFVQ--DVPAFISWLEYLSFTHYSYKLLLMSQY 559 (604)
Q Consensus 501 ~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~y~~~~l~~nef 559 (604)
+++++.++.+.+..+.++++.+++..+|.+.| ++|.|++|+.+++|+.|..|++=..-+
T Consensus 160 ~~a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~~~ 220 (257)
T PRK15066 160 INAVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYGFL 220 (257)
T ss_pred HHHHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHHHc
Confidence 88888899888888889999999999999988 899999999999999999998865444
No 457
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.86 E-value=3.8e-09 Score=130.37 Aligned_cols=76 Identities=18% Similarity=0.342 Sum_probs=64.2
Q ss_pred cccccCccCCCcCHHHHH------HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCCEEEEEec
Q 046786 167 NSIIGGRLVRGLSGGERK------RISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAE-----GGRTILMTIH 235 (604)
Q Consensus 167 ~~~vg~~~~~~LSgGerq------Rvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~-----~g~tvi~~~H 235 (604)
|+.++ ....||||||| |++||++++.+|++|+|||||+|||+.+...+.+.|.++.. .|.+||++||
T Consensus 1191 ~~~~~--~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitH 1268 (1311)
T TIGR00606 1191 DTALD--MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITH 1268 (1311)
T ss_pred CeecC--CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEec
Confidence 44443 34589999999 99999999999999999999999999999999999988742 3789999999
Q ss_pred CCchHHHhhc
Q 046786 236 QPASSLFYMF 245 (604)
Q Consensus 236 q~~~~i~~~~ 245 (604)
++. .+..++
T Consensus 1269 d~~-~~~~~~ 1277 (1311)
T TIGR00606 1269 DED-FVELLG 1277 (1311)
T ss_pred CHH-HHHHHh
Confidence 975 455443
No 458
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.83 E-value=4.2e-09 Score=128.88 Aligned_cols=77 Identities=16% Similarity=0.254 Sum_probs=68.0
Q ss_pred ccCCCcCHHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeE
Q 046786 173 RLVRGLSGGERKRISIGQELL----INPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKI 248 (604)
Q Consensus 173 ~~~~~LSgGerqRvsia~~L~----~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v 248 (604)
..+..||||||+|++||++++ .+|++++|||||+|||+.....+.++|+.+++ +.+||++||++. ....+|++
T Consensus 1085 ~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~--~~~~~d~~ 1161 (1179)
T TIGR02168 1085 QNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKG--TMEVADQL 1161 (1179)
T ss_pred ccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChh--HHHHhhhH
Confidence 457799999999999999985 57799999999999999999999999999975 478999999986 35679999
Q ss_pred EEEe
Q 046786 249 LLLS 252 (604)
Q Consensus 249 ~ll~ 252 (604)
+.+.
T Consensus 1162 ~~~~ 1165 (1179)
T TIGR02168 1162 YGVT 1165 (1179)
T ss_pred eeee
Confidence 8763
No 459
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.83 E-value=2.6e-09 Score=115.39 Aligned_cols=51 Identities=22% Similarity=0.352 Sum_probs=44.8
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCcccc-EEEECCEeCC
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQG-HITYNGKQFS 106 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G-~I~~~G~~~~ 106 (604)
+.+|++||+++++||+++|+|||||||||||+ +|+.. |++| +|.++|.++.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~-----~~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRK-----FSEGYEFFLDATHSF 70 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCC-----CCCCCEEEECCEECC
Confidence 46899999999999999999999999999999 66654 4466 8999999874
No 460
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.79 E-value=1.8e-08 Score=110.53 Aligned_cols=151 Identities=17% Similarity=0.221 Sum_probs=94.8
Q ss_pred ceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCHH
Q 046786 50 MILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTVA 129 (604)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~ 129 (604)
.++++.+..++.|++++++||||+||||++..|++.+.. ..|. ++++++.+|. ...++.
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~-----~~G~-------------~kV~LI~~Dt---~RigA~ 302 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVM-----RHGA-------------SKVALLTTDS---YRIGGH 302 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHH-----hcCC-------------CeEEEEeCCc---cchhHH
Confidence 356677777889999999999999999999999997631 1232 2578888876 347899
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHH-HHHHHHHHhhCC-----CeEEEeC
Q 046786 130 ETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERK-RISIGQELLINP-----SLLFLDE 203 (604)
Q Consensus 130 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq-Rvsia~~L~~~p-----~illLDE 203 (604)
|+|.+.+.... .+........+...+..++.+..+.+|. +...+++. .+.-..+++.++ .+|+||.
T Consensus 303 EQLr~~AeilG---Vpv~~~~~~~Dl~~aL~~L~d~d~VLID-----TaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdA 374 (484)
T PRK06995 303 EQLRIYGKILG---VPVHAVKDAADLRLALSELRNKHIVLID-----TIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNA 374 (484)
T ss_pred HHHHHHHHHhC---CCeeccCCchhHHHHHHhccCCCeEEeC-----CCCcChhhHHHHHHHHHHhccCCCCeeEEEEeC
Confidence 99998776542 1111111223344455677765444443 33223322 234444555555 6899999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q 046786 204 PTSGLDSTMAKKILVSLSKLAEGGRTILMTIH 235 (604)
Q Consensus 204 PtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H 235 (604)
++.+ ..+.+.++.....+.+=++.|+
T Consensus 375 t~~~------~~l~~i~~~f~~~~~~g~IlTK 400 (484)
T PRK06995 375 TSHG------DTLNEVVQAYRGPGLAGCILTK 400 (484)
T ss_pred CCcH------HHHHHHHHHhccCCCCEEEEeC
Confidence 9887 4455556666555554344444
No 461
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.74 E-value=3.6e-08 Score=99.56 Aligned_cols=136 Identities=24% Similarity=0.415 Sum_probs=82.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECC-EeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcC
Q 046786 62 GELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNG-KQFSAEVKRRTGFVAQNNVFYPHLTVAETLVFTALLRL 140 (604)
Q Consensus 62 Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G-~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~ 140 (604)
|++..|.||+|+|||||.-.++--.. +|.=.+.+ .... -...+-|+.=++
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va-------~G~~~~g~~~~~~--~~~~Vlyi~~Ed-------------------- 51 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMA-------LGKNLFGGGLKVT--EPGRVVYLSAED-------------------- 51 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHh-------cCccccCCccccC--CCceEEEEECCC--------------------
Confidence 67889999999999999988864322 22211111 1110 122344544222
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHH----------------HHhhCCCeEEEeCC
Q 046786 141 PNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQ----------------ELLINPSLLFLDEP 204 (604)
Q Consensus 141 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~----------------~L~~~p~illLDEP 204 (604)
+.++.++++..+...+++.+..+... ..+|+.|++.+++ ....+|+++++| |
T Consensus 52 ----~~~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-p 119 (239)
T cd01125 52 ----PREEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-P 119 (239)
T ss_pred ----CHHHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-C
Confidence 12223334555555555433222111 1134444444332 235799999999 7
Q ss_pred CC------CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCc
Q 046786 205 TS------GLDSTMAKKILVSLSKLAEG-GRTILMTIHQPA 238 (604)
Q Consensus 205 ts------gLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~ 238 (604)
++ .+|+.....+++.|++++++ |.+|+++.|...
T Consensus 120 l~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 120 LVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred hHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 65 47999999999999999864 999999999864
No 462
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.74 E-value=3.2e-07 Score=82.27 Aligned_cols=118 Identities=34% Similarity=0.417 Sum_probs=77.1
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcC
Q 046786 61 PGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTVAETLVFTALLRL 140 (604)
Q Consensus 61 ~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~ 140 (604)
++..+.|.||+|+||||+++.|+...... ..+-+.++......... ....
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~----~~~~~~~~~~~~~~~~~-----------------~~~~--------- 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPP----GGGVIYIDGEDILEEVL-----------------DQLL--------- 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCC----CCCEEEECCEEccccCH-----------------HHHH---------
Confidence 46789999999999999999999987521 01344444433211000 0000
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH--
Q 046786 141 PNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILV-- 218 (604)
Q Consensus 141 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~-- 218 (604)
.. ..........+++..+..+.++--.+|+++++||+..-.+.........
T Consensus 51 -----------------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~ 103 (148)
T smart00382 51 -----------------LI----------IVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLE 103 (148)
T ss_pred -----------------hh----------hhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhh
Confidence 00 0001123567788888777777777789999999999999988887765
Q ss_pred ----HHHHHHhCCCEEEEEec
Q 046786 219 ----SLSKLAEGGRTILMTIH 235 (604)
Q Consensus 219 ----~l~~la~~g~tvi~~~H 235 (604)
........+..+|+++|
T Consensus 104 ~~~~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 104 ELRLLLLLKSEKNLTVILTTN 124 (148)
T ss_pred hhHHHHHHHhcCCCEEEEEeC
Confidence 22233345788899998
No 463
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.71 E-value=2.2e-08 Score=122.63 Aligned_cols=77 Identities=13% Similarity=0.211 Sum_probs=68.5
Q ss_pred ccCCCcCHHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeE
Q 046786 173 RLVRGLSGGERKRISIGQELLI----NPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKI 248 (604)
Q Consensus 173 ~~~~~LSgGerqRvsia~~L~~----~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v 248 (604)
..+..||||||++++||.+++. .|++++||||++|||+.....+.+.|+++++ +..+|++||++. +...+|++
T Consensus 1070 ~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~--~~~~~d~~ 1146 (1164)
T TIGR02169 1070 QRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSP--MIEYADRA 1146 (1164)
T ss_pred CcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHH--HHHhccee
Confidence 3467899999999999999985 6799999999999999999999999999875 478999999974 66899999
Q ss_pred EEEe
Q 046786 249 LLLS 252 (604)
Q Consensus 249 ~ll~ 252 (604)
+.+.
T Consensus 1147 ~~~~ 1150 (1164)
T TIGR02169 1147 IGVT 1150 (1164)
T ss_pred EeEE
Confidence 9873
No 464
>PRK02224 chromosome segregation protein; Provisional
Probab=98.71 E-value=3.3e-08 Score=118.02 Aligned_cols=77 Identities=30% Similarity=0.363 Sum_probs=66.7
Q ss_pred cCCCcCHHHHH------HHHHHHHHhhC-----C-CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC-EEEEEecCCchH
Q 046786 174 LVRGLSGGERK------RISIGQELLIN-----P-SLLFLDEPTSGLDSTMAKKILVSLSKLAEGGR-TILMTIHQPASS 240 (604)
Q Consensus 174 ~~~~LSgGerq------Rvsia~~L~~~-----p-~illLDEPtsgLD~~~~~~i~~~l~~la~~g~-tvi~~~Hq~~~~ 240 (604)
.+..||||||+ |++++++++.+ | +++++||||++||+.....+++.|+.++..|. +||++||++.
T Consensus 778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~-- 855 (880)
T PRK02224 778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDE-- 855 (880)
T ss_pred ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChH--
Confidence 36789999999 89999888864 3 67999999999999999999999999987664 8999999985
Q ss_pred HHhhcCeEEEEe
Q 046786 241 LFYMFNKILLLS 252 (604)
Q Consensus 241 i~~~~d~v~ll~ 252 (604)
+...+|+++.+.
T Consensus 856 ~~~~ad~~~~~~ 867 (880)
T PRK02224 856 LVGAADDLVRVE 867 (880)
T ss_pred HHHhcCeeEEee
Confidence 346799999993
No 465
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=98.69 E-value=6.4e-07 Score=84.19 Aligned_cols=129 Identities=10% Similarity=-0.022 Sum_probs=93.4
Q ss_pred hHhhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCcchH--HHHHHHHHHHHHHHHHHHHHHHH
Q 046786 424 FPLERMMLEKERSSGMYRLSSYIMAKTAGDFVMELVLPTVFVIITYWMGGLKARV--INFLSTLAATLYTALVAQSLGLA 501 (604)
Q Consensus 424 ~~~er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~--~~F~~~~~~~~l~~~~~~s~~~~ 501 (604)
.-+|+-++.|-+..-. +++.|+++|++...-..+++.++...+.+++ |.+... ...+.++++..+.......++..
T Consensus 14 ~dr~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~~-g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~ 91 (152)
T TIGR01248 14 IDREIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALAL-GFRFRNGVAAALLFLLIPSIFGIAFAALVMA 91 (152)
T ss_pred HHHHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356678888887777 7889999999999999999988777777543 877653 22223333334444455555666
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CchhhHHhhhhcCHHHHHHHHHH
Q 046786 502 VGALVLNQRKAGTIATTLMLTFLLTGGFFVQ--DVPAFISWLEYLSFTHYSYKLLL 555 (604)
Q Consensus 502 i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~y~~~~l~ 555 (604)
++...++.+. .....++..|+.+.+|.+.| ++|.|++|+.+++|+.|+.+++=
T Consensus 92 ~a~~~~~~~~-~~~~~~v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~R 146 (152)
T TIGR01248 92 MALRKEGRFA-MEALELAQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEACA 146 (152)
T ss_pred HHHHcCCHHH-HHHHHHHHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHHH
Confidence 6555555544 33456677787888888898 99999999999999999999874
No 466
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.67 E-value=1.6e-07 Score=99.94 Aligned_cols=56 Identities=20% Similarity=0.317 Sum_probs=42.6
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEE
Q 046786 187 SIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLL 251 (604)
Q Consensus 187 sia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll 251 (604)
.++.+|-.+|+++++||+. |+.++...++ .+..|.+|+.|+|..+ .....+|++-+
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~~--~~~~~~Rl~~~ 242 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTNS--AAQTIERIIDV 242 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCCC--HHHHHHHHHHh
Confidence 4667888999999999997 8887765444 3567999999999865 33556777655
No 467
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.58 E-value=6.9e-07 Score=105.74 Aligned_cols=52 Identities=25% Similarity=0.277 Sum_probs=47.8
Q ss_pred HHHHHhhCCCeEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q 046786 188 IGQELLINPSLLFLDEPTSGL-DSTMAKKILVSLSKLAEGGRTILMTIHQPAS 239 (604)
Q Consensus 188 ia~~L~~~p~illLDEPtsgL-D~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~ 239 (604)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||+|..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d 732 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSD 732 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 567788999999999999999 7999999999999999889999999999864
No 468
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.55 E-value=1.1e-07 Score=101.79 Aligned_cols=61 Identities=21% Similarity=0.262 Sum_probs=56.1
Q ss_pred CCCcCHHHHHHHHHHHHHhh---------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 046786 175 VRGLSGGERKRISIGQELLI---------NPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPA 238 (604)
Q Consensus 175 ~~~LSgGerqRvsia~~L~~---------~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~ 238 (604)
...+|.||+|++.||..|+. +|+|++||||+++||+..+..+++.|++. |..|++|+|++.
T Consensus 273 ~~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 273 EDFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred HHhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 34689999999999999999 99999999999999999999999999764 779999999874
No 469
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.55 E-value=7.8e-08 Score=104.25 Aligned_cols=174 Identities=18% Similarity=0.187 Sum_probs=107.4
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----------hccccEEEEe
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----------EVKRRTGFVA 117 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----------~~~~~i~yv~ 117 (604)
+..+++++ +.+.+|+.++|+||||+|||||+++|+|..++.. ..-|.|-.+|+++.. ..+..+++++
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv--~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~ 218 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADV--VVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAP 218 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCe--EEEEEEeeecHHHHHHHHHHhhhcccceEEEEEec
Confidence 45699999 9999999999999999999999999999875321 012555555555432 1244799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHH-HHHHHHHhhCC
Q 046786 118 QNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKR-ISIGQELLINP 196 (604)
Q Consensus 118 Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR-vsia~~L~~~p 196 (604)
|+...+..+++.|++.+.+......+ +.|--+++ .++..+ |-+| ++
T Consensus 219 ~d~s~~~rl~a~e~a~~iAEyfr~~g-------~~Vll~~D--sltr~a---------------~A~REis--------- 265 (434)
T PRK07196 219 ADESPLMRIKATELCHAIATYYRDKG-------HDVLLLVD--SLTRYA---------------MAQREIA--------- 265 (434)
T ss_pred CCCChhhhHHHHHHHHHHHHHhhhcc-------CCEEEeec--chhHHH---------------hhhhHHH---------
Confidence 99999999999999988776531111 01111111 011111 1111 11
Q ss_pred CeEEEeCC--CCCCCHHHHHHHHHHHHHHHh---CC-CEEEEEecCCchHHH-hhcCeEEEEecCCeEEEe
Q 046786 197 SLLFLDEP--TSGLDSTMAKKILVSLSKLAE---GG-RTILMTIHQPASSLF-YMFNKILLLSSDGSSLYF 260 (604)
Q Consensus 197 ~illLDEP--tsgLD~~~~~~i~~~l~~la~---~g-~tvi~~~Hq~~~~i~-~~~d~v~ll~~~G~~v~~ 260 (604)
+.+.|| +.|-.+.....+-+++.+-.. .| .|.+-+..-|..++- -..|.+.-+ -||+++..
T Consensus 266 --l~~ge~P~~~Gyp~svf~~l~~l~ERag~~~~~GSIT~~~tVl~~~dD~~dpi~d~~~~i-lDG~ivLs 333 (434)
T PRK07196 266 --LSLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQDPIVDCARAV-LDGHIVLS 333 (434)
T ss_pred --HhcCCCCcccCcCHHHHHHhHHHHHHhhcCCCCEEeeeeeEEEccCCCCCCchhHhhhhh-cceEEEEc
Confidence 123354 347777777777777777632 23 466777665543322 234555555 57888864
No 470
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.54 E-value=4.4e-09 Score=116.89 Aligned_cols=165 Identities=18% Similarity=0.245 Sum_probs=100.1
Q ss_pred eeece-EEEEecCeEEEEECCCCCcHHHHHHHH--HcCCCCCCCCccccEEEECCEeCChhcc---ccEEEEecCCCCCC
Q 046786 51 ILKGV-SGAVSPGELLAILGPSGCGKTTLLTAL--GGRLSNGKDTVTQGHITYNGKQFSAEVK---RRTGFVAQNNVFYP 124 (604)
Q Consensus 51 iL~~v-s~~i~~Ge~~aIlGpsGaGKSTLL~~L--~g~~~~~~~~~~~G~I~~~G~~~~~~~~---~~i~yv~Q~~~l~~ 124 (604)
-|+.+ .+=+.+|..+.|.||+|||||||.... .|..+.+ +.-+++.......+++ +..|+-.|+..--.
T Consensus 9 gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~g-----e~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g 83 (484)
T TIGR02655 9 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFD-----EPGVFVTFEESPQDIIKNARSFGWDLQKLVDEG 83 (484)
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC-----CCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcC
Confidence 45554 567899999999999999999998876 3433211 3445555443322221 23444333211000
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHH--HHHhhCCCeEEEe
Q 046786 125 HLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIG--QELLINPSLLFLD 202 (604)
Q Consensus 125 ~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia--~~L~~~p~illLD 202 (604)
.+.+.+ .... .....+++.+++.+..+ +..+.+|+|++|||.|+ .+|..+|+..
T Consensus 84 ~l~~~~-------------~~~~---~~~~~~~~~~~l~~~l~-----~i~~~ls~g~~qRVvIDSl~aL~~~~~~~--- 139 (484)
T TIGR02655 84 KLFILD-------------ASPD---PEGQDVVGGFDLSALIE-----RINYAIRKYKAKRVSIDSVTAVFQQYDAV--- 139 (484)
T ss_pred ceEEEe-------------cCch---hccccccccCCHHHHHH-----HHHHHHHHhCCcEEEEeehhHhhhhcCch---
Confidence 000000 0000 00112334445544444 33458999999999999 6666666543
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH--------HHhhcCeEEEE
Q 046786 203 EPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASS--------LFYMFNKILLL 251 (604)
Q Consensus 203 EPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~--------i~~~~d~v~ll 251 (604)
...+..+.++++.+++.|.|+|+++|++... ...++|.++.|
T Consensus 140 -------~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L 189 (484)
T TIGR02655 140 -------SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVIL 189 (484)
T ss_pred -------HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEE
Confidence 4677888999999988899999999986421 25678999988
No 471
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.53 E-value=1.8e-07 Score=90.89 Aligned_cols=82 Identities=23% Similarity=0.132 Sum_probs=59.9
Q ss_pred eeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-hccccEEEEecCC--CCCCCCCH
Q 046786 52 LKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-EVKRRTGFVAQNN--VFYPHLTV 128 (604)
Q Consensus 52 L~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-~~~~~i~yv~Q~~--~l~~~lTv 128 (604)
.+=+.+.+++|+.++|+||||||||||+++|+|..+ ++.|.|.+.+..-.. ..+..++++.|.+ ...+..|+
T Consensus 15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~-----~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (186)
T cd01130 15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIP-----PDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTM 89 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC-----CCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCH
Confidence 333445678999999999999999999999999885 457999997743211 2234566666554 34667899
Q ss_pred HHHHHHHHHh
Q 046786 129 AETLVFTALL 138 (604)
Q Consensus 129 ~e~l~f~~~~ 138 (604)
.+.+....+.
T Consensus 90 ~~~l~~~lR~ 99 (186)
T cd01130 90 ADLLRSALRM 99 (186)
T ss_pred HHHHHHHhcc
Confidence 9988876654
No 472
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.53 E-value=8.6e-07 Score=96.81 Aligned_cols=175 Identities=18% Similarity=0.201 Sum_probs=108.3
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh------------hccccEEE
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA------------EVKRRTGF 115 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~------------~~~~~i~y 115 (604)
+..+++++ +.+.+||.++|+|+||+|||||+++|++..+ ++.|.+...|+.-.+ .+++.+.+
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~-----~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv 223 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTE-----ADVNVIALIGERGREVREFIEHDLGEEGLKRSVVV 223 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCEEEEEEEeecchHHHHHHHHHhcccccceEEEE
Confidence 35689999 9999999999999999999999999999875 346776666654321 12233444
Q ss_pred EecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCH-HHHHHHHHHHHHhh
Q 046786 116 VAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSG-GERKRISIGQELLI 194 (604)
Q Consensus 116 v~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg-GerqRvsia~~L~~ 194 (604)
+.+.+. ++.+-..-+. ... .+.+.+...|- + ..+- ...++- -|-+| ++.
T Consensus 224 ~~~~d~-----~p~~r~~~~~-----------~a~-t~AE~frd~G~-~---Vll~---~DslTr~A~A~R-----Eis- 273 (440)
T TIGR01026 224 VATSDQ-----SPLLRLKGAY-----------VAT-AIAEYFRDQGK-D---VLLL---MDSVTRFAMAQR-----EIG- 273 (440)
T ss_pred EECCCC-----CHHHHHHHHH-----------HHH-HHHHHHHHCCC-C---EEEE---EeChHHHHHHHH-----HHH-
Confidence 444332 1212111000 000 12222222232 1 1110 112221 11111 111
Q ss_pred CCCeEEEeCC--CCCCCHHHHHHHHHHHHHHHhCCC-------EEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhh
Q 046786 195 NPSLLFLDEP--TSGLDSTMAKKILVSLSKLAEGGR-------TILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGED 265 (604)
Q Consensus 195 ~p~illLDEP--tsgLD~~~~~~i~~~l~~la~~g~-------tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~ 265 (604)
+.+.|| +.|+|+.....+-+++.+....|. ||++..||..+ ..+|++.-+ .+|+++..++..+
T Consensus 274 ----l~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~d---pi~d~~~~i-~dG~ivLsr~la~ 345 (440)
T TIGR01026 274 ----LAAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMNE---PIADSVRGI-LDGHIVLSRALAQ 345 (440)
T ss_pred ----HhcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCCc---chhhhhccc-cceEEEEecchhh
Confidence 345676 559999999999999999887666 88888898753 357899988 7999999987654
Q ss_pred H
Q 046786 266 V 266 (604)
Q Consensus 266 ~ 266 (604)
.
T Consensus 346 ~ 346 (440)
T TIGR01026 346 R 346 (440)
T ss_pred C
Confidence 4
No 473
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.52 E-value=3.7e-08 Score=98.62 Aligned_cols=33 Identities=27% Similarity=0.471 Sum_probs=27.4
Q ss_pred eeece-EEEEecCeEEEEECCCCCcHHHHHHHHH
Q 046786 51 ILKGV-SGAVSPGELLAILGPSGCGKTTLLTALG 83 (604)
Q Consensus 51 iL~~v-s~~i~~Ge~~aIlGpsGaGKSTLL~~L~ 83 (604)
-|+++ .+=+++|++++|.||+|+|||||...++
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHH
Confidence 35553 4678999999999999999999988665
No 474
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.49 E-value=3.7e-07 Score=109.15 Aligned_cols=81 Identities=35% Similarity=0.439 Sum_probs=71.5
Q ss_pred ccCCCcCHHHHHHHHHHHHHh------hC--CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhh
Q 046786 173 RLVRGLSGGERKRISIGQELL------IN--PSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYM 244 (604)
Q Consensus 173 ~~~~~LSgGerqRvsia~~L~------~~--p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~ 244 (604)
+.+..|||||+-.++||.+|+ .+ -+++||||||..||+.+...++++|..+...|++|+++||++ ++.+.
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e~ 888 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKER 888 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHHh
Confidence 478899999999988887764 35 589999999999999999999999999998899999999995 57789
Q ss_pred cCeEEEEecCC
Q 046786 245 FNKILLLSSDG 255 (604)
Q Consensus 245 ~d~v~ll~~~G 255 (604)
+|.++.+.+.|
T Consensus 889 ~~~~i~V~k~~ 899 (908)
T COG0419 889 ADVRIRVKKDG 899 (908)
T ss_pred CCeEEEEEecC
Confidence 99999985444
No 475
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.49 E-value=1.2e-07 Score=92.83 Aligned_cols=112 Identities=16% Similarity=0.202 Sum_probs=66.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHH-hcCCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTVAETLVFTAL-LRLPN 142 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~-~~~~~ 142 (604)
+++|.||||||||||.++|++.+. .|. +.++++|+.+ ..++..+....... ...|.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~-------~~~---------------~~v~~~D~~~-~~~~~~~~~~~~~~~~~~~~ 57 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG-------NPK---------------VVIISQDSYY-KDLSHEELEERKNNNYDHPD 57 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC-------CCC---------------eEEEEecccc-cccccccHHHhccCCCCCCC
Confidence 579999999999999999999763 222 3344444332 22233332221110 01111
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 046786 143 SLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDS 210 (604)
Q Consensus 143 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~ 210 (604)
.. ..+...+.++.+...+..+ .+....|.|++++..+ .+.+|+++++|+|..+.++
T Consensus 58 ~~----~~~~~~~~l~~l~~~~~~~-----~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 58 AF----DFDLLISHLQDLKNGKSVE-----IPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred cc----cHHHHHHHHHHHHCCCCEe-----ccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 11 1223445666666544333 3345778888776555 5688999999999999886
No 476
>PRK14079 recF recombination protein F; Provisional
Probab=98.43 E-value=4.7e-07 Score=96.61 Aligned_cols=76 Identities=21% Similarity=0.219 Sum_probs=62.8
Q ss_pred CCcCHHHHHHHHHHHHHh---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcC
Q 046786 176 RGLSGGERKRISIGQELL---------INPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFN 246 (604)
Q Consensus 176 ~~LSgGerqRvsia~~L~---------~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d 246 (604)
.-+|+||+|++.+|..|+ .+|++++||||+++||...+..+.+.|.+.. .++|.+++.| ..+|
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~---q~~it~t~~~-----~~~~ 333 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP---QAIVAGTEAP-----PGAA 333 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC---cEEEEcCCCC-----CCCc
Confidence 468999999999999999 8999999999999999999999998886542 3566666554 3689
Q ss_pred eEEEEecCCeEEEe
Q 046786 247 KILLLSSDGSSLYF 260 (604)
Q Consensus 247 ~v~ll~~~G~~v~~ 260 (604)
+++.+ .+|+..-.
T Consensus 334 ~~~~~-~~~~~~~~ 346 (349)
T PRK14079 334 LTLRI-EAGVFTPE 346 (349)
T ss_pred eEEEE-eccEecCC
Confidence 99999 77876533
No 477
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.40 E-value=6.7e-07 Score=105.65 Aligned_cols=137 Identities=21% Similarity=0.241 Sum_probs=85.5
Q ss_pred ceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCHH
Q 046786 50 MILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTVA 129 (604)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~ 129 (604)
.+=+|+++. +.+.++.|.|||++||||+||.++-..- +.+.=+|||=+..-+ .+.
T Consensus 596 ~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~i---------------------lAq~G~~VPa~~a~i---~~~ 650 (854)
T PRK05399 596 FVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVL---------------------LAQIGSFVPAESARI---GIV 650 (854)
T ss_pred eEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHH---------------------HHhcCCceeccceEe---ccc
Confidence 456677777 6778999999999999999999875421 011112343322111 111
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHh--hCCCeEEEeCC---
Q 046786 130 ETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELL--INPSLLFLDEP--- 204 (604)
Q Consensus 130 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~--~~p~illLDEP--- 204 (604)
+. +...+|-. | ...++.|-=+.....++..|- ++++++++|||
T Consensus 651 d~------------------------I~triga~---d-----~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrG 698 (854)
T PRK05399 651 DR------------------------IFTRIGAS---D-----DLASGRSTFMVEMTETANILNNATERSLVLLDEIGRG 698 (854)
T ss_pred Ce------------------------eeeccCcc---c-----ccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCC
Confidence 11 11111211 1 123467776666666666654 49999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCe
Q 046786 205 TSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNK 247 (604)
Q Consensus 205 tsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~ 247 (604)
|+.+|..+ .....++.+.+. |.+++++||.. ++..++++
T Consensus 699 Ts~~dg~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 699 TSTYDGLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred CCcchhHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 88888443 455566666665 58999999993 56677664
No 478
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.33 E-value=1.2e-05 Score=95.14 Aligned_cols=49 Identities=24% Similarity=0.246 Sum_probs=44.1
Q ss_pred HHhhCCCeEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q 046786 191 ELLINPSLLFLDEPTSGLD-STMAKKILVSLSKLAEGGRTILMTIHQPAS 239 (604)
Q Consensus 191 ~L~~~p~illLDEPtsgLD-~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~ 239 (604)
.+..+|.++++|||...|| +..+..+.+.++.+++.|..++++||+|..
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d 687 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVED 687 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 3456899999999999999 888999999999999889999999999853
No 479
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.31 E-value=3.7e-07 Score=87.96 Aligned_cols=65 Identities=18% Similarity=0.331 Sum_probs=46.0
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--hcc-ccEEEEecCCCCCCCCCHHHHHHH
Q 046786 61 PGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--EVK-RRTGFVAQNNVFYPHLTVAETLVF 134 (604)
Q Consensus 61 ~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--~~~-~~i~yv~Q~~~l~~~lTv~e~l~f 134 (604)
+||+++|+|+||||||||+++|++++. -+.++|.++.. ..+ ...|+.+|+...++..++.++..+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~---------~~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS---------AKFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC---------CEEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 699999999999999999999999874 15778877643 122 235666666554555555555554
No 480
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.30 E-value=1.9e-06 Score=105.72 Aligned_cols=163 Identities=20% Similarity=0.245 Sum_probs=90.5
Q ss_pred ceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHH
Q 046786 54 GVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTVAETLV 133 (604)
Q Consensus 54 ~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~ 133 (604)
=+++..+++++++|.|++|+|||||++++++.... ..+|.+++++..+.... . .+-.++... .+..
T Consensus 199 lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~----~F~g~vfv~~~~v~~~~-~--~~~~~~~~~-------~~~~ 264 (1153)
T PLN03210 199 LLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR----QFQSSVFIDRAFISKSM-E--IYSSANPDD-------YNMK 264 (1153)
T ss_pred HHccccCceEEEEEEcCCCCchHHHHHHHHHHHhh----cCCeEEEeeccccccch-h--hcccccccc-------cchh
Confidence 34667788999999999999999999999887642 23788988763321100 0 000000000 0000
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHH
Q 046786 134 FTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMA 213 (604)
Q Consensus 134 f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~ 213 (604)
.....+.+.++++..++. +..+ ++.|+| |..++-+++||+- |..
T Consensus 265 ------------~~l~~~~l~~il~~~~~~-----------~~~~-~~~~~~------L~~krvLLVLDdv----~~~-- 308 (1153)
T PLN03210 265 ------------LHLQRAFLSEILDKKDIK-----------IYHL-GAMEER------LKHRKVLIFIDDL----DDQ-- 308 (1153)
T ss_pred ------------HHHHHHHHHHHhCCCCcc-----------cCCH-HHHHHH------HhCCeEEEEEeCC----CCH--
Confidence 001112334444444331 1122 566665 3355667889984 433
Q ss_pred HHHHHHHHHHH---hCCCEEEEEecCCchHHHhh-cCeEEEEecCCeEEEecChhhHHHHHHhCCC
Q 046786 214 KKILVSLSKLA---EGGRTILMTIHQPASSLFYM-FNKILLLSSDGSSLYFGKGEDVINYFAGIGY 275 (604)
Q Consensus 214 ~~i~~~l~~la---~~g~tvi~~~Hq~~~~i~~~-~d~v~ll~~~G~~v~~G~~~~~~~~f~~~g~ 275 (604)
..++.|+... ..|.+||+|||+.. .+... +|+++-+ . .=+.+++.+.|...-|
T Consensus 309 -~~l~~L~~~~~~~~~GsrIIiTTrd~~-vl~~~~~~~~~~v-~------~l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 309 -DVLDALAGQTQWFGSGSRIIVITKDKH-FLRAHGIDHIYEV-C------LPSNELALEMFCRSAF 365 (1153)
T ss_pred -HHHHHHHhhCccCCCCcEEEEEeCcHH-HHHhcCCCeEEEe-c------CCCHHHHHHHHHHHhc
Confidence 3344444433 35889999999964 23222 5666555 2 1134677888876544
No 481
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.27 E-value=1.2e-06 Score=108.34 Aligned_cols=61 Identities=26% Similarity=0.348 Sum_probs=53.9
Q ss_pred cCCCcCHHHHHHHH----HHHH--------HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 046786 174 LVRGLSGGERKRIS----IGQE--------LLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQP 237 (604)
Q Consensus 174 ~~~~LSgGerqRvs----ia~~--------L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~ 237 (604)
...+||||||||+. +|++ +..+|++++|||||+|||+.....++++++++ |.++|+++|..
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence 46799999999996 5644 55899999999999999999999999999988 78999999863
No 482
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=98.27 E-value=2.7e-05 Score=79.08 Aligned_cols=133 Identities=19% Similarity=0.238 Sum_probs=96.1
Q ss_pred hhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Q 046786 427 ERMMLEKERSSGMYRLSSYIMAKTAGDFVMELVLPTVFVIITYWMGGLKARVINFLSTLAATLYTALVAQSLGLAVG-AL 505 (604)
Q Consensus 427 er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~F~~~~~~~~l~~~~~~s~~~~i~-a~ 505 (604)
++..+.|=..+...+ ..+++++.+.......+...+...++.+..|. .....+..+...+.+..+...++|.+++ ..
T Consensus 116 ~~g~~~~~~~sp~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~ 193 (286)
T COG0842 116 EFGTLERLLVSPVSR-LFILLGKIVPYLVVASLIAGLVLLVIAFLLGV-PFLGSLLLLLLLLLLLLLATVALGLLLSTFA 193 (286)
T ss_pred hhCcHHHHHhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555533 55677777777666666666655666666662 2233455555556666677777888666 36
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhhcccC--CchhhHHhhhhcCHHHHHHHHHHHHhcCC
Q 046786 506 VLNQRKAGTIATTLMLTFLLTGGFFVQ--DVPAFISWLEYLSFTHYSYKLLLMSQYNP 561 (604)
Q Consensus 506 ~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~y~~~~l~~nef~~ 561 (604)
.++.+.+..++.++..++.+++|.+.| .+|.|++|+.++.|..|+.+++-.....+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~ 251 (286)
T COG0842 194 KSQLQCASAVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGG 251 (286)
T ss_pred hhHHHHHHHHHHHHHHHHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCC
Confidence 677888888888999999999999999 89999999999999999999998877765
No 483
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.27 E-value=1.3e-06 Score=95.00 Aligned_cols=68 Identities=22% Similarity=0.346 Sum_probs=54.9
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECC---EeCCh--------hccccEEEE
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNG---KQFSA--------EVKRRTGFV 116 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G---~~~~~--------~~~~~i~yv 116 (604)
+..+++.++ .+.+||.++|+||||+||||||++|++..+ ++.|.|.+.| +++.. ..++.+++|
T Consensus 152 Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~-----pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV 225 (450)
T PRK06002 152 GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADA-----FDTVVIALVGERGREVREFLEDTLADNLKKAVAVV 225 (450)
T ss_pred CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEE
Confidence 356888886 899999999999999999999999999875 4689888864 44421 123579999
Q ss_pred ecCCC
Q 046786 117 AQNNV 121 (604)
Q Consensus 117 ~Q~~~ 121 (604)
+|.+.
T Consensus 226 ~qsd~ 230 (450)
T PRK06002 226 ATSDE 230 (450)
T ss_pred EcCCC
Confidence 99875
No 484
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.16 E-value=6.6e-05 Score=77.05 Aligned_cols=39 Identities=28% Similarity=0.423 Sum_probs=34.1
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
+...|+++.+-+.+|+++.|.||+|+|||||+..++...
T Consensus 16 g~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~ 54 (271)
T cd01122 16 PFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDL 54 (271)
T ss_pred CcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 345789988999999999999999999999999887643
No 485
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.15 E-value=3e-06 Score=85.07 Aligned_cols=74 Identities=23% Similarity=0.313 Sum_probs=51.1
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccE----EEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHH
Q 046786 60 SPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGH----ITYNGKQFSAEVKRRTGFVAQNNVFYPHLTVAETLVFT 135 (604)
Q Consensus 60 ~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~----I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~f~ 135 (604)
.+..+++|.||||||||||.+.|+++++ +.+|. |.+++...+...++..|++++.+ .+..+++.+.+.+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~-----~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~-~~~~~d~~~~~~~l 104 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ-----QDGELPAIQVPMDGFHLDNAVLDAHGLRPRKG-APETFDVAGLAALL 104 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh-----hccCCceEEEecccccCCHHHHHhcccccccC-CCCCCCHHHHHHHH
Confidence 3467999999999999999999999886 34676 55565444433344567777644 33566777766665
Q ss_pred HHhc
Q 046786 136 ALLR 139 (604)
Q Consensus 136 ~~~~ 139 (604)
..++
T Consensus 105 ~~l~ 108 (229)
T PRK09270 105 RRLR 108 (229)
T ss_pred HHHH
Confidence 5444
No 486
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.14 E-value=3.8e-05 Score=90.88 Aligned_cols=46 Identities=26% Similarity=0.276 Sum_probs=42.2
Q ss_pred hhCCCeEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 046786 193 LINPSLLFLDEPTSGLD-STMAKKILVSLSKLAEGGRTILMTIHQPA 238 (604)
Q Consensus 193 ~~~p~illLDEPtsgLD-~~~~~~i~~~l~~la~~g~tvi~~~Hq~~ 238 (604)
-.+|+++++|||+.+|| +..+..+.+.++.+++.|.+++++||+|.
T Consensus 633 ~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 679 (811)
T PRK13873 633 DGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLA 679 (811)
T ss_pred cCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 45899999999999999 78899999999999988999999999985
No 487
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.11 E-value=3.1e-06 Score=66.71 Aligned_cols=36 Identities=39% Similarity=0.650 Sum_probs=29.5
Q ss_pred eeceEEEEec-CeEEEEECCCCCcHHHHHHHHHcCCC
Q 046786 52 LKGVSGAVSP-GELLAILGPSGCGKTTLLTALGGRLS 87 (604)
Q Consensus 52 L~~vs~~i~~-Ge~~aIlGpsGaGKSTLL~~L~g~~~ 87 (604)
.++..+.+.+ |+++.|.|||||||||||++|.=.+-
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 4556677775 56999999999999999999987653
No 488
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.11 E-value=7.1e-06 Score=89.36 Aligned_cols=109 Identities=16% Similarity=0.240 Sum_probs=70.9
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECC---EeCCh----hcc---ccEEEE--
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNG---KQFSA----EVK---RRTGFV-- 116 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G---~~~~~----~~~---~~i~yv-- 116 (604)
..+++++ +.+.+||.++|+|+||+|||||+++|+|..+. .+.|.|.+.| +++.+ .++ ...+++
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~----~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvv 226 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEE----ADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVV 226 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhccccc----CCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEE
Confidence 4589998 99999999999999999999999999998742 2346777755 44421 111 234555
Q ss_pred ---ecCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 046786 117 ---AQNNV--FYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLA 163 (604)
Q Consensus 117 ---~Q~~~--l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 163 (604)
+|++. +.+.+ +..++.-..+..........+...+..+.+++++|.
T Consensus 227 ats~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 227 STSDQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred eCCCCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 78753 33433 444443333322111123345667788899999884
No 489
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.11 E-value=4.8e-06 Score=95.14 Aligned_cols=115 Identities=23% Similarity=0.333 Sum_probs=71.8
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCCCCCCC---CccccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHH
Q 046786 61 PGELLAILGPSGCGKTTLLTALGGRLSNGKD---TVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTVAETLVFTAL 137 (604)
Q Consensus 61 ~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~---~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~ 137 (604)
..+.++|.||||+|||||.++|.+..+.... .+..+-+.+||..+....+. + ++-.++
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~----------------i-~~~llg-- 234 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE----------------V-TNPLLG-- 234 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH----------------H-hHHhcC--
Confidence 4557999999999999999999987642110 01234466665443100000 0 011111
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH
Q 046786 138 LRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKIL 217 (604)
Q Consensus 138 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~ 217 (604)
... +...+.+.+.++..|+.+..+ ..+..+||| +||||| +..||+..+..++
T Consensus 235 -----~~~-~~~~~~a~~~l~~~gl~~~~~-----g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll 286 (615)
T TIGR02903 235 -----SVH-DPIYQGARRDLAETGVPEPKT-----GLVTDAHGG----------------VLFIDE-IGELDPLLQNKLL 286 (615)
T ss_pred -----Ccc-HHHHHHHHHHHHHcCCCchhc-----CchhhcCCC----------------eEEEec-cccCCHHHHHHHH
Confidence 011 111223455678888876555 345578888 999999 7999999999999
Q ss_pred HHHHH
Q 046786 218 VSLSK 222 (604)
Q Consensus 218 ~~l~~ 222 (604)
+.|++
T Consensus 287 ~~Le~ 291 (615)
T TIGR02903 287 KVLED 291 (615)
T ss_pred HHHhh
Confidence 99976
No 490
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.09 E-value=6.9e-06 Score=70.18 Aligned_cols=50 Identities=34% Similarity=0.456 Sum_probs=38.4
Q ss_pred ccCCCcCHHHH-HHHHHHHHH------hh------CCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 046786 173 RLVRGLSGGER-KRISIGQEL------LI------NPSLLFLDEPTSGLDSTMAKKILVSLSK 222 (604)
Q Consensus 173 ~~~~~LSgGer-qRvsia~~L------~~------~p~illLDEPtsgLD~~~~~~i~~~l~~ 222 (604)
+..+++||||| ..+.++.++ -. .|++++||||+++||+.....+++.|++
T Consensus 28 ~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 28 RSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred ccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 34569999999 445554433 22 3789999999999999999999999875
No 491
>PRK01889 GTPase RsgA; Reviewed
Probab=98.09 E-value=5.1e-06 Score=88.88 Aligned_cols=105 Identities=22% Similarity=0.268 Sum_probs=70.2
Q ss_pred eeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCC-hhccccEEEEecCCCCCCCCCHHH
Q 046786 52 LKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS-AEVKRRTGFVAQNNVFYPHLTVAE 130 (604)
Q Consensus 52 L~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~-~~~~~~i~yv~Q~~~l~~~lTv~e 130 (604)
++.+.-.+++|+.++|+|+||+|||||+|+|+|... +..|+|.+++.... ...++.+++++|+..++++ ....
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~-----~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~ 258 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEV-----QKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMR 258 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcc-----cceeeEEECCCCCcchhhhccEEEecCCCeecCC-Cchh
Confidence 455555678999999999999999999999999875 46899999875432 2345679999998877754 3444
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 046786 131 TLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRN 167 (604)
Q Consensus 131 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 167 (604)
++.+.. +. ......-....++.+.+.+.+|.+
T Consensus 259 ~~~l~~----~~-~~l~~~f~~~~~~~~~c~f~~c~h 290 (356)
T PRK01889 259 ELQLWD----AE-DGVEETFSDIEELAAQCRFRDCAH 290 (356)
T ss_pred hhcccC----ch-hhHHHhHHHHHHHHccCCCCCCCC
Confidence 443321 00 001111123555667777777766
No 492
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.07 E-value=5.2e-05 Score=73.37 Aligned_cols=67 Identities=16% Similarity=0.190 Sum_probs=45.0
Q ss_pred HHHHHHHHcCCCccccccccCccCCCcCHHHHHHHH--HHHHHhh-CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 046786 152 HAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRIS--IGQELLI-NPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG 226 (604)
Q Consensus 152 ~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvs--ia~~L~~-~p~illLDEPtsgLD~~~~~~i~~~l~~la~~ 226 (604)
.+.+.++..++.- -.+++ +...+|+||++++. +++.+-. ++++ .|+|++|.....++.+.|+++.++
T Consensus 126 ~i~~~l~~~~~~~---iiv~n-K~Dl~~~~~~~~~~~~i~~~l~~~~~~~----~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 126 QMIEWLKEYGIPV---LIVLT-KADKLKKGERKKQLKKVRKALKFGDDEV----ILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHcCCcE---EEEEE-CcccCCHHHHHHHHHHHHHHHHhcCCce----EEEEcCCCCCHHHHHHHHHHHhcC
Confidence 3445566555431 12332 34568999999977 4444433 3444 399999999999999999988764
No 493
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.06 E-value=2e-05 Score=71.28 Aligned_cols=55 Identities=20% Similarity=0.271 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCCEEEEEecCCc
Q 046786 183 RKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAE-----GGRTILMTIHQPA 238 (604)
Q Consensus 183 rqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~-----~g~tvi~~~Hq~~ 238 (604)
++..........++.++++||.-.. ++.....+.+.+..... .+.++|++++.+.
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 4444555566778999999998765 56667778888888753 4778889988653
No 494
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.05 E-value=4.2e-06 Score=81.18 Aligned_cols=37 Identities=35% Similarity=0.617 Sum_probs=30.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCC
Q 046786 62 GELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS 106 (604)
Q Consensus 62 Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~ 106 (604)
|++++|+||||||||||++.|++... ..+.+++..+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~--------~~~~~~~~~~~ 38 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ--------TQLLVAHRYIT 38 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC--------CeEEEcCEECC
Confidence 78999999999999999999999763 25777776654
No 495
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.00 E-value=6.5e-06 Score=85.25 Aligned_cols=75 Identities=16% Similarity=0.202 Sum_probs=52.5
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEe---CChhccccEEEEecCCCCCCCCCHHHHHHHHHH
Q 046786 61 PGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQ---FSAEVKRRTGFVAQNNVFYPHLTVAETLVFTAL 137 (604)
Q Consensus 61 ~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~---~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~ 137 (604)
.-.++||.||||||||||.++|.+++.. .+.+|+|.+-+.+ .+...++..++. |+..+.+.+++.+.+.+-..
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~~---~~~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~L~~ 136 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLSR---WPEHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKFLSD 136 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhh---cCCCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHHHHH
Confidence 3469999999999999999999998752 1346777664443 333333445654 66667778888888887666
Q ss_pred hc
Q 046786 138 LR 139 (604)
Q Consensus 138 ~~ 139 (604)
++
T Consensus 137 Lk 138 (290)
T TIGR00554 137 LK 138 (290)
T ss_pred HH
Confidence 54
No 496
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.99 E-value=0.0025 Score=64.58 Aligned_cols=122 Identities=19% Similarity=0.173 Sum_probs=74.5
Q ss_pred HHHHHHhcCCCC--------ChHHHHHHHHHHHHHHHHHHHH---HHhhhhhcccc--CcchHHHHHHHHHHHHHHHHHH
Q 046786 429 MMLEKERSSGMY--------RLSSYIMAKTAGDFVMELVLPT---VFVIITYWMGG--LKARVINFLSTLAATLYTALVA 495 (604)
Q Consensus 429 ~v~~rE~~~g~Y--------~~~ay~la~~l~~lp~~~~~~~---if~~i~Y~~~g--l~~~~~~F~~~~~~~~l~~~~~ 495 (604)
..+.+||++|.. +++.+.++|.++-.-..++..+ ++....++... -..+...++...+..++...+.
T Consensus 71 ~~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (240)
T TIGR03518 71 RSFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTFGSYIGLLLLGSVY 150 (240)
T ss_pred HHHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHH
Confidence 344555555543 5678999999998765444332 22222222211 1224555555555556667788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcc-cCCc--hhhHHhhhhcCHHHHHHH
Q 046786 496 QSLGLAVGALVLNQRKAGTIATTLMLTFLLTGGFF-VQDV--PAFISWLEYLSFTHYSYK 552 (604)
Q Consensus 496 ~s~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~-i~~i--p~~~~Wl~yiSp~~y~~~ 552 (604)
.++|.++|+++++...|..++..+... ++.|+- +.++ |.+.+|+.|+||..|-.+
T Consensus 151 ~aig~~iSsl~~~q~~a~~~~~~~~~~--l~~~~~~l~~~~~~~~~~~l~~~sp~~~~~~ 208 (240)
T TIGR03518 151 TAIGLFASSLTENQIVAFIIAVFLCFL--FYFGFDGLASLLWGGSAYTISELGLSYHYES 208 (240)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHH--HHHHHHHHhhhcchhHHHHHHHcCHHHHHHH
Confidence 899999999999988886655433222 222321 3344 889999999999777544
No 497
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.96 E-value=3.4e-06 Score=83.30 Aligned_cols=28 Identities=36% Similarity=0.501 Sum_probs=26.1
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046786 60 SPGELLAILGPSGCGKTTLLTALGGRLS 87 (604)
Q Consensus 60 ~~Ge~~aIlGpsGaGKSTLL~~L~g~~~ 87 (604)
++|++++|.||||||||||++.|+++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999999999864
No 498
>PRK08149 ATP synthase SpaL; Validated
Probab=97.94 E-value=1.6e-05 Score=86.24 Aligned_cols=71 Identities=20% Similarity=0.333 Sum_probs=55.7
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh---h-----ccccEEEEecC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---E-----VKRRTGFVAQN 119 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---~-----~~~~i~yv~Q~ 119 (604)
+..+++++ +.+.+||.++|+|+||+|||||+++|++...+.. ..-|.|-.+|+++.. . ..+++++|...
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv--~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~ 214 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADV--FVIGLIGERGREVTEFVESLRASSRREKCVLVYAT 214 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCe--EEEEEEeeCCccHHHHHHHHhhcccccceEEEEEC
Confidence 35699999 9999999999999999999999999999875321 123899999998742 1 23567888775
Q ss_pred CC
Q 046786 120 NV 121 (604)
Q Consensus 120 ~~ 121 (604)
..
T Consensus 215 sd 216 (428)
T PRK08149 215 SD 216 (428)
T ss_pred CC
Confidence 43
No 499
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.91 E-value=3.3e-05 Score=85.24 Aligned_cols=62 Identities=19% Similarity=0.277 Sum_probs=43.1
Q ss_pred hCCCeEEEeCCCCC----CC-----HHHHHHHHHHHHHHHh-CCCEEEEEecCCch-------HHHhhcCeEEEEecCCe
Q 046786 194 INPSLLFLDEPTSG----LD-----STMAKKILVSLSKLAE-GGRTILMTIHQPAS-------SLFYMFNKILLLSSDGS 256 (604)
Q Consensus 194 ~~p~illLDEPtsg----LD-----~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~-------~i~~~~d~v~ll~~~G~ 256 (604)
.+|+++++|.-++= ++ .....+++..|.++++ .|.|++++.|...+ .+.+++|.++.| +.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~L-e~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYF-EGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEE-eccC
Confidence 47999999987652 11 2234556667778765 59999999996432 256788999998 5443
No 500
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.91 E-value=7.1e-06 Score=80.43 Aligned_cols=56 Identities=25% Similarity=0.348 Sum_probs=42.5
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecC
Q 046786 60 SPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQN 119 (604)
Q Consensus 60 ~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~ 119 (604)
++|++++|+|+||||||||.+.|++++.+ ...|.+.++|.++.......++|.+|+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~----~~~~~~~ld~d~~~~~~~~~~~~~~~~ 77 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHE----LGVSTYLLDGDNVRHGLCSDLGFSDAD 77 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh----CCCCEEEEcCEeHHhhhhhcCCcCccc
Confidence 67889999999999999999999997642 114789999987654333345665554
Done!