Query 046786
Match_columns 604
No_of_seqs 374 out of 3539
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 07:16:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046786.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046786hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 6.2E-50 2.1E-54 422.5 28.6 226 27-267 19-252 (366)
2 3tif_A Uncharacterized ABC tra 100.0 5.5E-49 1.9E-53 394.4 27.2 221 33-266 2-232 (235)
3 2olj_A Amino acid ABC transpor 100.0 2.9E-48 9.9E-53 395.0 29.2 217 32-267 24-247 (263)
4 3rlf_A Maltose/maltodextrin im 100.0 2.8E-48 9.4E-53 412.3 29.4 217 33-268 4-223 (381)
5 1b0u_A Histidine permease; ABC 100.0 3.9E-48 1.3E-52 394.3 28.4 217 32-267 6-241 (262)
6 3fvq_A Fe(3+) IONS import ATP- 100.0 1.9E-48 6.5E-53 410.9 26.5 218 32-268 4-228 (359)
7 3gfo_A Cobalt import ATP-bindi 100.0 4.5E-48 1.5E-52 395.9 27.5 219 32-268 7-233 (275)
8 1vpl_A ABC transporter, ATP-bi 100.0 1.5E-47 5.1E-52 388.4 28.1 220 31-269 14-236 (256)
9 2pcj_A ABC transporter, lipopr 100.0 1E-47 3.5E-52 382.4 26.3 212 32-263 4-223 (224)
10 1z47_A CYSA, putative ABC-tran 100.0 1.6E-47 5.4E-52 403.9 28.6 218 32-267 14-234 (355)
11 2it1_A 362AA long hypothetical 100.0 2.3E-47 8E-52 403.9 28.0 217 33-268 4-223 (362)
12 2yyz_A Sugar ABC transporter, 100.0 2E-47 6.7E-52 404.1 26.6 217 33-268 4-223 (359)
13 1g29_1 MALK, maltose transport 100.0 5.7E-47 2E-51 402.9 29.6 217 33-268 4-229 (372)
14 1g6h_A High-affinity branched- 100.0 1.7E-47 5.9E-52 388.5 24.1 218 32-265 7-239 (257)
15 4g1u_C Hemin import ATP-bindin 100.0 2.7E-47 9.1E-52 388.8 24.5 215 32-267 11-236 (266)
16 1oxx_K GLCV, glucose, ABC tran 100.0 2.9E-47 1E-51 402.7 25.6 217 32-267 3-229 (353)
17 1v43_A Sugar-binding transport 100.0 4.4E-47 1.5E-51 403.2 25.8 216 33-267 12-230 (372)
18 1ji0_A ABC transporter; ATP bi 100.0 5.4E-47 1.8E-51 381.1 24.6 216 32-267 6-227 (240)
19 3d31_A Sulfate/molybdate ABC t 100.0 1.1E-46 3.7E-51 397.1 25.0 212 33-267 2-216 (348)
20 2onk_A Molybdate/tungstate ABC 100.0 1.4E-46 4.7E-51 377.8 23.9 211 33-267 2-215 (240)
21 2yz2_A Putative ABC transporte 100.0 3.4E-46 1.2E-50 380.8 24.5 220 33-268 3-227 (266)
22 2d2e_A SUFC protein; ABC-ATPas 100.0 7.1E-46 2.4E-50 375.2 24.2 220 32-265 3-230 (250)
23 2ihy_A ABC transporter, ATP-bi 100.0 5.4E-46 1.8E-50 381.6 21.1 220 31-266 20-250 (279)
24 2zu0_C Probable ATP-dependent 100.0 9.9E-45 3.4E-49 370.2 28.3 230 32-276 20-261 (267)
25 2qi9_C Vitamin B12 import ATP- 100.0 2.1E-45 7.2E-50 371.1 22.2 196 50-266 14-220 (249)
26 2nq2_C Hypothetical ABC transp 100.0 1.1E-44 3.8E-49 366.9 25.8 210 32-266 4-215 (253)
27 2ixe_A Antigen peptide transpo 100.0 3E-45 1E-49 374.7 19.7 218 32-268 16-245 (271)
28 3nh6_A ATP-binding cassette SU 100.0 2.1E-44 7E-49 373.6 23.5 213 33-268 54-277 (306)
29 2ff7_A Alpha-hemolysin translo 100.0 1.4E-44 4.8E-49 364.9 21.5 200 48-267 21-231 (247)
30 1mv5_A LMRA, multidrug resista 100.0 1.4E-44 4.9E-49 364.1 17.8 204 47-268 13-226 (243)
31 1sgw_A Putative ABC transporte 100.0 8.7E-45 3E-49 358.4 14.8 202 31-257 9-210 (214)
32 2ghi_A Transport protein; mult 100.0 3.8E-43 1.3E-47 357.1 24.0 216 31-268 16-242 (260)
33 2pjz_A Hypothetical protein ST 100.0 2.3E-43 7.7E-48 359.0 22.1 209 33-267 2-214 (263)
34 2pze_A Cystic fibrosis transme 100.0 3.2E-42 1.1E-46 343.9 19.8 204 32-267 6-217 (229)
35 2cbz_A Multidrug resistance-as 100.0 6.8E-42 2.3E-46 343.3 21.0 210 33-268 4-217 (237)
36 3gd7_A Fusion complex of cysti 100.0 2.1E-42 7.3E-47 369.4 16.9 214 32-268 19-242 (390)
37 2yl4_A ATP-binding cassette SU 100.0 6.2E-41 2.1E-45 378.8 24.2 218 33-268 342-570 (595)
38 3b5x_A Lipid A export ATP-bind 100.0 4.3E-41 1.5E-45 379.2 22.4 216 32-268 341-567 (582)
39 3b60_A Lipid A export ATP-bind 100.0 7.8E-41 2.7E-45 377.1 24.3 215 33-268 342-567 (582)
40 4a82_A Cystic fibrosis transme 100.0 9.6E-41 3.3E-45 376.0 21.7 214 33-268 340-564 (578)
41 3qf4_A ABC transporter, ATP-bi 100.0 1.1E-40 3.8E-45 375.9 20.3 214 33-268 342-566 (587)
42 3qf4_B Uncharacterized ABC tra 100.0 2.3E-40 7.8E-45 374.2 18.1 201 48-268 367-578 (598)
43 2bbs_A Cystic fibrosis transme 100.0 1.3E-39 4.4E-44 335.7 18.8 188 49-267 51-246 (290)
44 4f4c_A Multidrug resistance pr 100.0 1.2E-38 4.1E-43 387.9 20.8 217 33-268 1077-1304(1321)
45 4f4c_A Multidrug resistance pr 100.0 8E-38 2.7E-42 380.6 20.2 215 33-268 416-641 (1321)
46 3g5u_A MCG1178, multidrug resi 100.0 1.6E-37 5.4E-42 377.2 18.8 217 33-268 388-613 (1284)
47 3g5u_A MCG1178, multidrug resi 100.0 4.5E-37 1.5E-41 373.2 18.3 202 49-268 1046-1258(1284)
48 3bk7_A ABC transporter ATP-bin 100.0 3.9E-36 1.3E-40 338.6 22.0 191 50-268 370-563 (607)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 3.8E-36 1.3E-40 335.0 19.1 191 50-268 300-493 (538)
50 3ozx_A RNAse L inhibitor; ATP 100.0 2.9E-35 9.9E-40 327.4 20.9 192 50-267 282-476 (538)
51 3j16_B RLI1P; ribosome recycli 100.0 1E-34 3.5E-39 326.6 19.4 193 49-269 360-560 (608)
52 3ux8_A Excinuclease ABC, A sub 100.0 1E-34 3.4E-39 332.5 16.8 212 48-267 30-297 (670)
53 3bk7_A ABC transporter ATP-bin 100.0 1.6E-34 5.3E-39 325.5 12.1 181 50-255 106-304 (607)
54 1yqt_A RNAse L inhibitor; ATP- 100.0 1.9E-34 6.6E-39 321.3 12.3 181 50-255 36-234 (538)
55 2iw3_A Elongation factor 3A; a 100.0 5.6E-33 1.9E-37 323.5 23.2 187 47-268 446-635 (986)
56 3ux8_A Excinuclease ABC, A sub 100.0 1.8E-32 6.3E-37 313.7 19.2 203 49-267 335-639 (670)
57 2iw3_A Elongation factor 3A; a 100.0 6E-33 2.1E-37 323.2 13.8 207 32-262 671-981 (986)
58 3ozx_A RNAse L inhibitor; ATP 100.0 3.6E-32 1.2E-36 302.4 8.8 173 59-257 22-215 (538)
59 3j16_B RLI1P; ribosome recycli 100.0 2.5E-31 8.7E-36 299.0 13.9 188 49-259 91-301 (608)
60 3pih_A Uvrabc system protein A 100.0 1.3E-29 4.4E-34 295.0 23.6 204 49-267 597-901 (916)
61 2r6f_A Excinuclease ABC subuni 100.0 2.9E-30 9.9E-35 298.5 16.6 202 50-267 638-941 (972)
62 2vf7_A UVRA2, excinuclease ABC 100.0 1.1E-29 3.8E-34 293.2 17.0 202 50-267 511-826 (842)
63 2ygr_A Uvrabc system protein A 100.0 1.2E-29 4E-34 294.5 16.8 201 50-268 656-960 (993)
64 2npi_A Protein CLP1; CLP1-PCF1 100.0 2.8E-31 9.4E-36 289.9 -7.2 185 53-266 129-336 (460)
65 4aby_A DNA repair protein RECN 100.0 1.5E-27 5.1E-32 257.5 20.1 208 49-261 48-381 (415)
66 3b85_A Phosphate starvation-in 99.9 3.5E-29 1.2E-33 245.8 -12.6 142 46-238 10-159 (208)
67 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 4.9E-25 1.7E-29 234.4 18.2 84 173-259 275-364 (365)
68 1e69_A Chromosome segregation 99.9 8E-25 2.7E-29 228.9 13.8 209 53-267 16-312 (322)
69 1tq4_A IIGP1, interferon-induc 99.9 3.7E-27 1.3E-31 253.3 -10.2 170 49-248 36-247 (413)
70 4gp7_A Metallophosphoesterase; 99.9 2.8E-25 9.6E-30 211.1 3.8 143 54-238 1-160 (171)
71 1znw_A Guanylate kinase, GMP k 99.9 1.5E-27 5.1E-32 233.6 -18.2 182 47-252 7-202 (207)
72 1ye8_A Protein THEP1, hypothet 99.9 8E-24 2.7E-28 202.7 4.4 145 64-259 2-159 (178)
73 3b9q_A Chloroplast SRP recepto 99.9 6.4E-24 2.2E-28 220.0 0.6 173 52-257 90-284 (302)
74 2v9p_A Replication protein E1; 99.9 9E-26 3.1E-30 233.3 -16.5 158 49-273 113-271 (305)
75 3sop_A Neuronal-specific septi 99.9 4.7E-24 1.6E-28 217.6 -4.6 146 64-237 4-150 (270)
76 2og2_A Putative signal recogni 99.8 7.3E-23 2.5E-27 216.2 0.5 172 53-257 148-341 (359)
77 2vf7_A UVRA2, excinuclease ABC 99.8 3E-20 1E-24 214.8 21.4 110 150-267 357-474 (842)
78 2dpy_A FLII, flagellum-specifi 99.8 3.7E-23 1.3E-27 224.5 -4.6 177 48-266 144-342 (438)
79 2pt7_A CAG-ALFA; ATPase, prote 99.8 3E-22 1E-26 210.0 -0.6 130 51-256 160-291 (330)
80 1z6g_A Guanylate kinase; struc 99.8 4.3E-25 1.5E-29 218.2 -21.0 154 49-225 10-175 (218)
81 2o5v_A DNA replication and rep 99.8 2.4E-20 8.2E-25 197.2 12.2 86 172-266 259-354 (359)
82 1cr0_A DNA primase/helicase; R 99.8 1.8E-21 6E-26 200.6 3.3 185 48-257 21-237 (296)
83 3qkt_A DNA double-strand break 99.8 1E-19 3.5E-24 191.5 16.2 78 173-252 244-327 (339)
84 3pih_A Uvrabc system protein A 99.8 2.3E-20 7.9E-25 217.4 11.9 154 92-267 393-559 (916)
85 2jeo_A Uridine-cytidine kinase 99.8 1.3E-21 4.3E-26 196.5 -0.7 181 46-271 9-190 (245)
86 4ad8_A DNA repair protein RECN 99.8 1.2E-19 4.1E-24 201.5 12.1 78 174-255 393-473 (517)
87 3aez_A Pantothenate kinase; tr 99.8 7.1E-22 2.4E-26 205.5 -7.3 123 59-210 87-209 (312)
88 1tf7_A KAIC; homohexamer, hexa 99.8 1E-19 3.6E-24 202.4 9.4 156 56-256 275-444 (525)
89 1tf7_A KAIC; homohexamer, hexa 99.8 2.1E-22 7.1E-27 224.2 -12.4 169 47-255 23-210 (525)
90 2o8b_B DNA mismatch repair pro 99.8 3.5E-20 1.2E-24 219.2 1.5 161 47-265 767-939 (1022)
91 2r6f_A Excinuclease ABC subuni 99.8 2.3E-18 7.7E-23 199.6 15.6 135 125-267 451-599 (972)
92 2eyu_A Twitching motility prot 99.8 7.4E-20 2.5E-24 185.6 2.7 130 50-251 15-145 (261)
93 2ehv_A Hypothetical protein PH 99.8 5.1E-20 1.7E-24 183.7 1.2 162 57-251 25-205 (251)
94 3thx_A DNA mismatch repair pro 99.8 1.1E-18 3.8E-23 204.1 11.9 160 48-266 648-811 (934)
95 2obl_A ESCN; ATPase, hydrolase 99.8 3.3E-20 1.1E-24 195.6 -1.0 178 48-266 58-253 (347)
96 2ygr_A Uvrabc system protein A 99.7 3.7E-18 1.3E-22 198.5 13.2 133 124-268 467-617 (993)
97 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 3.7E-18 1.3E-22 158.2 9.8 79 172-252 52-136 (148)
98 3thx_B DNA mismatch repair pro 99.7 1.7E-19 5.7E-24 210.5 0.1 145 48-248 659-805 (918)
99 4a74_A DNA repair and recombin 99.7 3.7E-19 1.3E-23 175.2 1.0 155 57-255 20-200 (231)
100 1ewq_A DNA mismatch repair pro 99.7 1.4E-18 4.6E-23 200.0 4.1 134 48-245 565-704 (765)
101 1rj9_A FTSY, signal recognitio 99.7 4.3E-19 1.5E-23 183.8 -0.9 148 61-238 101-259 (304)
102 3asz_A Uridine kinase; cytidin 99.7 1.6E-20 5.3E-25 183.5 -11.9 146 59-238 3-162 (211)
103 2qnr_A Septin-2, protein NEDD5 99.7 1.6E-19 5.5E-24 186.9 -5.5 157 46-238 8-168 (301)
104 1wb9_A DNA mismatch repair pro 99.7 4.3E-18 1.5E-22 196.8 2.4 157 48-262 594-752 (800)
105 2i3b_A HCR-ntpase, human cance 99.7 1.9E-19 6.4E-24 173.9 -8.2 156 62-261 1-169 (189)
106 1nlf_A Regulatory protein REPA 99.7 9.6E-17 3.3E-21 163.9 11.0 151 58-238 26-182 (279)
107 1pzn_A RAD51, DNA repair and r 99.7 1.3E-18 4.3E-23 183.9 -3.4 165 51-262 119-309 (349)
108 2w0m_A SSO2452; RECA, SSPF, un 99.7 5.8E-18 2E-22 166.5 0.3 164 49-251 9-189 (235)
109 3jvv_A Twitching mobility prot 99.6 3.8E-17 1.3E-21 172.7 3.5 124 58-251 119-243 (356)
110 3szr_A Interferon-induced GTP- 99.6 5.2E-18 1.8E-22 191.6 -3.8 165 65-269 48-238 (608)
111 1s96_A Guanylate kinase, GMP k 99.6 3E-17 1E-21 162.2 -3.3 152 55-272 9-164 (219)
112 1pui_A ENGB, probable GTP-bind 99.6 2.7E-17 9.2E-22 159.5 -4.2 168 50-229 16-202 (210)
113 2qag_C Septin-7; cell cycle, c 99.6 1.6E-16 5.6E-21 171.0 -1.7 153 46-237 21-177 (418)
114 2bdt_A BH3686; alpha-beta prot 99.5 3.1E-18 1.1E-22 164.3 -14.5 170 62-267 2-183 (189)
115 1zp6_A Hypothetical protein AT 99.5 1.3E-17 4.4E-22 159.8 -10.4 153 58-235 5-159 (191)
116 2bbw_A Adenylate kinase 4, AK4 99.5 1.1E-17 3.7E-22 167.7 -12.8 153 61-227 26-200 (246)
117 2cvh_A DNA repair and recombin 99.5 7.8E-15 2.7E-19 143.1 7.1 152 50-252 7-183 (220)
118 3kta_B Chromosome segregation 99.5 2.8E-14 9.5E-19 135.6 10.6 91 173-266 60-156 (173)
119 2ewv_A Twitching motility prot 99.5 3.1E-15 1E-19 159.2 4.4 129 51-251 127-256 (372)
120 2rcn_A Probable GTPase ENGC; Y 99.5 8.7E-15 3E-19 154.1 5.6 141 51-225 205-346 (358)
121 1nij_A Hypothetical protein YJ 99.5 5.2E-18 1.8E-22 176.9 -19.0 165 63-246 5-197 (318)
122 2qag_B Septin-6, protein NEDD5 99.5 1E-15 3.6E-20 164.4 -2.2 171 47-236 26-218 (427)
123 2yhs_A FTSY, cell division pro 99.5 4.1E-15 1.4E-19 161.8 -0.8 152 52-235 283-447 (503)
124 2gza_A Type IV secretion syste 99.5 6.8E-15 2.3E-19 156.0 0.3 135 52-255 165-302 (361)
125 3auy_A DNA double-strand break 99.4 3.4E-13 1.2E-17 143.4 12.9 81 173-256 276-363 (371)
126 1lw7_A Transcriptional regulat 99.4 6.3E-17 2.2E-21 171.8 -16.1 161 51-251 157-341 (365)
127 3e70_C DPA, signal recognition 99.4 1.6E-14 5.5E-19 150.9 0.9 142 60-237 127-279 (328)
128 1n0w_A DNA repair protein RAD5 99.4 2.3E-13 7.8E-18 134.7 7.9 155 57-255 19-209 (243)
129 1htw_A HI0065; nucleotide-bind 99.4 6.3E-15 2.1E-19 138.0 -3.2 80 47-134 18-97 (158)
130 2f1r_A Molybdopterin-guanine d 99.4 1.5E-15 5.2E-20 144.1 -8.3 138 63-227 3-163 (171)
131 2qm8_A GTPase/ATPase; G protei 99.4 1E-15 3.5E-20 160.8 -11.4 162 48-225 41-260 (337)
132 2kjq_A DNAA-related protein; s 99.4 3.5E-13 1.2E-17 124.8 5.4 45 193-238 81-126 (149)
133 2yv5_A YJEQ protein; hydrolase 99.4 2.4E-14 8.1E-19 148.1 -3.2 121 59-191 162-301 (302)
134 1odf_A YGR205W, hypothetical 3 99.3 3.5E-14 1.2E-18 145.9 -2.5 128 60-212 29-169 (290)
135 3ec2_A DNA replication protein 99.3 7.2E-13 2.5E-17 125.8 6.7 49 192-240 97-146 (180)
136 1w1w_A Structural maintenance 99.3 3.9E-12 1.3E-16 137.8 10.7 76 175-252 331-410 (430)
137 1udx_A The GTP-binding protein 99.3 3.3E-13 1.1E-17 145.2 1.8 171 52-249 147-320 (416)
138 1sxj_E Activator 1 40 kDa subu 99.3 2.2E-12 7.5E-17 135.3 7.2 135 65-239 39-176 (354)
139 1p9r_A General secretion pathw 99.3 6.2E-15 2.1E-19 158.8 -14.4 133 51-200 158-314 (418)
140 3lda_A DNA repair protein RAD5 99.2 3E-11 1E-15 129.4 11.9 150 57-255 173-363 (400)
141 2oap_1 GSPE-2, type II secreti 99.2 1.1E-14 3.9E-19 160.7 -15.2 176 49-245 247-457 (511)
142 3c8u_A Fructokinase; YP_612366 99.2 5.9E-14 2E-18 136.9 -8.6 165 59-271 19-184 (208)
143 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 7.6E-15 2.6E-19 156.6 -17.6 173 58-265 16-210 (392)
144 1in4_A RUVB, holliday junction 99.2 1.5E-13 5.1E-18 144.0 -9.8 154 47-225 29-194 (334)
145 1u0l_A Probable GTPase ENGC; p 99.1 2.9E-12 9.9E-17 132.3 -1.2 106 58-180 165-294 (301)
146 1t9h_A YLOQ, probable GTPase E 99.1 2.5E-12 8.5E-17 132.9 -2.6 117 58-185 169-303 (307)
147 2x8a_A Nuclear valosin-contain 99.1 1.9E-14 6.5E-19 146.8 -19.7 128 48-206 32-164 (274)
148 1lvg_A Guanylate kinase, GMP k 99.0 2.2E-14 7.4E-19 139.2 -21.2 153 60-251 2-171 (198)
149 2dr3_A UPF0273 protein PH0284; 99.0 2.3E-11 7.8E-16 120.4 -1.9 59 194-252 127-195 (247)
150 1sq5_A Pantothenate kinase; P- 99.0 2.3E-11 7.9E-16 125.9 -2.1 86 50-139 49-156 (308)
151 1vma_A Cell division protein F 99.0 2.7E-10 9.3E-15 117.7 5.2 113 55-224 97-212 (306)
152 2r6a_A DNAB helicase, replicat 99.0 2.2E-10 7.6E-15 124.9 4.5 179 49-256 190-400 (454)
153 1ls1_A Signal recognition part 98.9 3.5E-09 1.2E-13 108.9 10.2 118 53-223 91-209 (295)
154 1iy2_A ATP-dependent metallopr 98.9 5.2E-13 1.8E-17 136.0 -18.5 123 49-198 62-190 (278)
155 1ixz_A ATP-dependent metallopr 98.9 8.1E-13 2.8E-17 132.5 -18.2 123 49-198 38-166 (254)
156 2zr9_A Protein RECA, recombina 98.9 3.4E-09 1.2E-13 111.5 8.6 154 51-262 48-237 (349)
157 3euj_A Chromosome partition pr 98.8 4.9E-10 1.7E-14 122.2 1.7 52 49-106 17-68 (483)
158 1oix_A RAS-related protein RAB 98.8 4.9E-10 1.7E-14 107.1 0.8 143 64-223 31-189 (191)
159 2ius_A DNA translocase FTSK; n 98.8 1E-10 3.6E-15 128.4 -4.5 165 54-238 159-343 (512)
160 3tr0_A Guanylate kinase, GMP k 98.8 2.2E-10 7.4E-15 110.4 -2.6 66 56-130 1-70 (205)
161 2px0_A Flagellar biosynthesis 98.8 6E-09 2.1E-13 107.2 7.2 141 60-260 103-247 (296)
162 3k1j_A LON protease, ATP-depen 98.8 9.5E-11 3.2E-15 132.3 -8.2 161 47-222 45-227 (604)
163 3lnc_A Guanylate kinase, GMP k 98.6 6.2E-10 2.1E-14 109.9 -5.3 39 49-87 14-53 (231)
164 1qhl_A Protein (cell division 98.6 1.5E-09 5.3E-14 107.2 -3.7 58 56-119 22-91 (227)
165 2ce7_A Cell division protein F 98.6 4.2E-08 1.4E-12 107.2 6.6 59 180-238 93-165 (476)
166 1svm_A Large T antigen; AAA+ f 98.6 3.2E-11 1.1E-15 128.1 -17.9 156 49-229 156-324 (377)
167 2f9l_A RAB11B, member RAS onco 98.6 3.1E-08 1.1E-12 94.9 4.3 37 186-224 130-166 (199)
168 3hr8_A Protein RECA; alpha and 98.5 6.2E-08 2.1E-12 101.9 4.6 77 51-132 48-128 (356)
169 4eun_A Thermoresistant glucoki 98.5 5.9E-09 2E-13 100.5 -3.5 58 56-122 23-83 (200)
170 2qtf_A Protein HFLX, GTP-bindi 98.5 1.3E-07 4.5E-12 100.0 6.2 151 64-225 181-353 (364)
171 2xau_A PRE-mRNA-splicing facto 98.4 4E-07 1.4E-11 105.5 8.4 82 174-256 187-270 (773)
172 4a1f_A DNAB helicase, replicat 98.3 4E-07 1.4E-11 95.1 4.9 130 49-235 33-164 (338)
173 4e22_A Cytidylate kinase; P-lo 98.3 6.3E-08 2.2E-12 97.0 -1.2 62 51-120 19-96 (252)
174 2j41_A Guanylate kinase; GMP, 98.3 2.2E-07 7.6E-12 89.1 2.6 30 58-87 2-31 (207)
175 3uie_A Adenylyl-sulfate kinase 98.3 1.5E-08 5E-13 97.8 -5.9 53 49-107 12-66 (200)
176 2dhr_A FTSH; AAA+ protein, hex 98.2 2.5E-09 8.6E-14 117.5 -13.6 129 49-206 53-187 (499)
177 2e87_A Hypothetical protein PH 98.2 1.6E-06 5.3E-11 91.3 7.2 62 175-238 229-293 (357)
178 1zu4_A FTSY; GTPase, signal re 98.2 2.9E-07 1E-11 95.6 1.1 77 52-133 95-185 (320)
179 3kta_A Chromosome segregation 98.2 6.7E-07 2.3E-11 84.2 3.3 36 51-87 14-51 (182)
180 1kgd_A CASK, peripheral plasma 98.1 6.2E-07 2.1E-11 84.8 1.7 28 60-87 3-30 (180)
181 1jjv_A Dephospho-COA kinase; P 98.1 4.9E-07 1.7E-11 87.1 0.7 126 64-251 4-130 (206)
182 3vaa_A Shikimate kinase, SK; s 98.1 1.5E-06 5E-11 83.5 3.4 40 47-86 10-49 (199)
183 1fnn_A CDC6P, cell division co 98.1 7.8E-06 2.7E-10 85.8 8.9 44 194-238 124-170 (389)
184 3b9p_A CG5977-PA, isoform A; A 98.0 2.6E-05 8.8E-10 79.2 12.3 73 179-251 97-186 (297)
185 3nwj_A ATSK2; P loop, shikimat 98.0 3.5E-07 1.2E-11 91.6 -1.8 52 32-86 17-72 (250)
186 2dy1_A Elongation factor G; tr 98.0 1.9E-06 6.4E-11 98.2 3.2 131 56-238 3-137 (665)
187 3a00_A Guanylate kinase, GMP k 98.0 1.9E-06 6.5E-11 81.8 2.2 26 62-87 1-26 (186)
188 3t34_A Dynamin-related protein 97.9 3.3E-05 1.1E-09 81.2 10.8 57 178-235 155-212 (360)
189 2z4s_A Chromosomal replication 97.9 1.5E-06 5.2E-11 94.1 0.5 95 194-291 193-295 (440)
190 1ega_A Protein (GTP-binding pr 97.9 1.2E-05 4.2E-10 82.5 6.8 63 178-248 101-169 (301)
191 2vp4_A Deoxynucleoside kinase; 97.9 3.7E-06 1.3E-10 82.7 2.5 40 57-105 15-54 (230)
192 3bh0_A DNAB-like replicative h 97.9 1.2E-05 4.3E-10 83.0 6.3 132 49-235 55-189 (315)
193 3tau_A Guanylate kinase, GMP k 97.9 4.2E-06 1.4E-10 81.0 2.5 28 60-87 6-33 (208)
194 1v5w_A DMC1, meiotic recombina 97.8 8.3E-05 2.9E-09 77.7 11.9 140 57-237 117-274 (343)
195 2z43_A DNA repair and recombin 97.8 6.8E-05 2.3E-09 77.7 10.0 139 57-236 102-257 (324)
196 2qby_A CDC6 homolog 1, cell di 97.8 7.3E-06 2.5E-10 85.7 2.6 27 60-86 43-69 (386)
197 1knq_A Gluconate kinase; ALFA/ 97.8 6E-06 2E-10 77.1 1.8 37 60-105 6-42 (175)
198 1rz3_A Hypothetical protein rb 97.7 5.9E-06 2E-10 79.5 0.8 41 59-104 19-59 (201)
199 3kl4_A SRP54, signal recogniti 97.7 8.3E-05 2.8E-09 80.0 9.2 125 61-236 96-223 (433)
200 2qt1_A Nicotinamide riboside k 97.7 2.2E-05 7.5E-10 75.5 4.3 29 58-86 17-45 (207)
201 3cf0_A Transitional endoplasmi 97.7 4.3E-05 1.5E-09 78.2 6.7 28 59-86 46-73 (301)
202 3tqc_A Pantothenate kinase; bi 97.7 2.8E-06 9.6E-11 88.1 -2.6 41 47-87 71-117 (321)
203 3cr8_A Sulfate adenylyltranfer 97.7 4.8E-06 1.6E-10 92.5 -1.2 43 58-105 365-409 (552)
204 1cke_A CK, MSSA, protein (cyti 97.6 3.7E-06 1.3E-10 81.8 -2.1 57 62-120 5-74 (227)
205 3ney_A 55 kDa erythrocyte memb 97.6 2.7E-05 9.1E-10 75.0 2.8 29 59-87 16-44 (197)
206 1kag_A SKI, shikimate kinase I 97.5 2.7E-05 9.3E-10 72.3 2.4 26 61-86 3-28 (173)
207 1lv7_A FTSH; alpha/beta domain 97.5 0.00024 8.3E-09 70.5 9.5 34 51-86 36-69 (257)
208 2pez_A Bifunctional 3'-phospho 97.5 7.9E-06 2.7E-10 76.7 -1.4 40 60-105 3-44 (179)
209 1ypw_A Transitional endoplasmi 97.5 6.8E-05 2.3E-09 87.2 5.6 30 58-87 234-263 (806)
210 2q6t_A DNAB replication FORK h 97.5 0.00054 1.8E-08 74.0 12.4 169 50-251 188-395 (444)
211 1f2t_A RAD50 ABC-ATPase; DNA d 97.5 5.3E-05 1.8E-09 69.5 3.7 31 53-84 15-45 (149)
212 3llm_A ATP-dependent RNA helic 97.4 4.4E-05 1.5E-09 75.1 2.4 67 179-247 162-229 (235)
213 2p67_A LAO/AO transport system 97.3 1.6E-05 5.6E-10 83.0 -2.0 52 48-104 42-93 (341)
214 1w1w_A Structural maintenance 97.3 8.6E-05 3E-09 79.9 3.3 31 57-87 21-51 (430)
215 1mky_A Probable GTP-binding pr 97.3 0.00018 6.3E-09 77.6 5.6 69 64-132 182-261 (439)
216 3h4m_A Proteasome-activating n 97.3 0.00046 1.6E-08 69.3 8.0 27 60-86 49-75 (285)
217 3m6a_A ATP-dependent protease 97.3 3.5E-05 1.2E-09 85.6 -0.4 50 49-104 96-145 (543)
218 1l8q_A Chromosomal replication 97.3 0.00087 3E-08 68.9 10.2 46 193-238 96-142 (324)
219 3bos_A Putative DNA replicatio 97.3 0.00016 5.4E-09 70.2 4.1 44 194-237 103-148 (242)
220 3lxx_A GTPase IMAP family memb 97.2 0.0012 4.2E-08 64.6 10.5 24 64-87 31-54 (239)
221 2www_A Methylmalonic aciduria 97.2 7.7E-05 2.6E-09 78.2 1.6 41 60-105 72-112 (349)
222 2w58_A DNAI, primosome compone 97.2 0.00045 1.5E-08 65.8 6.6 24 63-86 55-78 (202)
223 4eaq_A DTMP kinase, thymidylat 97.2 0.00017 5.7E-09 71.0 3.2 37 51-87 12-51 (229)
224 2b8t_A Thymidine kinase; deoxy 97.2 0.00078 2.7E-08 66.0 7.8 52 195-251 89-149 (223)
225 2gj8_A MNME, tRNA modification 97.1 0.00044 1.5E-08 64.1 5.8 27 60-86 2-28 (172)
226 1u94_A RECA protein, recombina 97.1 0.0086 3E-07 62.7 15.8 35 51-85 50-86 (356)
227 3qks_A DNA double-strand break 97.1 0.00025 8.7E-09 68.3 3.7 31 54-85 16-46 (203)
228 3d8b_A Fidgetin-like protein 1 97.0 0.0023 7.7E-08 67.0 10.6 27 60-86 115-141 (357)
229 2v1u_A Cell division control p 97.0 0.00045 1.5E-08 72.0 5.2 27 60-86 42-68 (387)
230 1m2o_B GTP-binding protein SAR 97.0 0.00057 1.9E-08 64.4 5.4 52 50-102 12-66 (190)
231 2qor_A Guanylate kinase; phosp 97.0 0.00029 9.8E-09 67.6 2.7 29 58-86 8-36 (204)
232 2qz4_A Paraplegin; AAA+, SPG7, 97.0 0.002 6.7E-08 63.6 8.9 26 61-86 38-63 (262)
233 1m7g_A Adenylylsulfate kinase; 97.0 0.00022 7.5E-09 68.8 1.8 41 59-104 22-64 (211)
234 1y63_A LMAJ004144AAA protein; 96.9 0.00038 1.3E-08 65.6 3.0 32 54-85 2-33 (184)
235 1f6b_A SAR1; gtpases, N-termin 96.9 0.00021 7.2E-09 68.0 0.7 36 49-85 13-48 (198)
236 3bgw_A DNAB-like replicative h 96.8 0.0018 6.1E-08 70.0 7.6 36 50-85 185-220 (444)
237 2i1q_A DNA repair and recombin 96.8 0.0056 1.9E-07 62.9 10.7 33 52-84 87-120 (322)
238 2p5t_B PEZT; postsegregational 96.7 0.00032 1.1E-08 69.8 0.8 41 58-105 28-68 (253)
239 2qag_A Septin-2, protein NEDD5 96.7 0.00014 4.9E-09 76.5 -1.8 34 47-86 28-61 (361)
240 2if2_A Dephospho-COA kinase; a 96.7 0.00062 2.1E-08 64.9 2.8 21 64-84 3-23 (204)
241 1xwi_A SKD1 protein; VPS4B, AA 96.7 0.012 4.1E-07 60.6 12.8 27 60-86 43-69 (322)
242 2ffh_A Protein (FFH); SRP54, s 96.6 0.00044 1.5E-08 74.3 1.3 46 53-105 91-136 (425)
243 3auy_A DNA double-strand break 96.6 0.0011 3.6E-08 69.9 3.8 31 52-83 16-46 (371)
244 3ice_A Transcription terminati 96.6 0.00061 2.1E-08 71.8 1.8 33 54-86 166-198 (422)
245 2ga8_A Hypothetical 39.9 kDa p 96.6 0.00022 7.6E-09 74.5 -1.6 37 50-86 10-48 (359)
246 2yvu_A Probable adenylyl-sulfa 96.6 0.0011 3.9E-08 62.1 3.5 28 60-87 11-38 (186)
247 2wjg_A FEOB, ferrous iron tran 96.6 0.002 6.8E-08 59.9 5.1 22 64-85 9-30 (188)
248 2wji_A Ferrous iron transport 96.5 0.0012 4.2E-08 60.4 3.4 23 64-86 5-27 (165)
249 3cm0_A Adenylate kinase; ATP-b 96.5 0.0013 4.5E-08 61.4 3.4 26 60-85 2-27 (186)
250 3t61_A Gluconokinase; PSI-biol 96.5 0.001 3.6E-08 63.3 2.7 25 62-86 18-42 (202)
251 3ihw_A Centg3; RAS, centaurin, 96.4 0.0032 1.1E-07 58.9 5.6 23 64-86 22-44 (184)
252 1q57_A DNA primase/helicase; d 96.4 0.025 8.6E-07 61.8 13.5 34 51-84 231-264 (503)
253 3kb2_A SPBC2 prophage-derived 96.4 0.0016 5.4E-08 59.8 3.3 23 64-86 3-25 (173)
254 1j8m_F SRP54, signal recogniti 96.4 0.00038 1.3E-08 71.3 -1.1 47 53-105 89-136 (297)
255 1qhx_A CPT, protein (chloramph 96.4 0.0019 6.4E-08 59.9 3.6 26 62-87 3-28 (178)
256 1sxj_C Activator 1 40 kDa subu 96.4 0.00035 1.2E-08 72.5 -1.6 40 48-87 30-71 (340)
257 1np6_A Molybdopterin-guanine d 96.4 0.0017 5.7E-08 61.1 3.2 39 63-103 7-45 (174)
258 2ohf_A Protein OLA1, GTP-bindi 96.3 0.0014 4.7E-08 69.6 2.7 47 57-103 17-69 (396)
259 2vhj_A Ntpase P4, P4; non- hyd 96.3 0.0052 1.8E-07 63.3 6.7 28 57-84 118-145 (331)
260 2zej_A Dardarin, leucine-rich 96.3 0.0019 6.4E-08 60.3 3.1 23 64-86 4-26 (184)
261 1q3t_A Cytidylate kinase; nucl 96.3 0.002 7E-08 63.0 3.3 28 59-86 13-40 (236)
262 1kht_A Adenylate kinase; phosp 96.2 0.0024 8.2E-08 59.6 3.5 25 62-86 3-27 (192)
263 1gvn_B Zeta; postsegregational 96.2 0.0025 8.6E-08 64.7 3.7 36 60-102 31-66 (287)
264 3r20_A Cytidylate kinase; stru 96.2 0.0025 8.5E-08 62.8 3.4 25 62-86 9-33 (233)
265 1xp8_A RECA protein, recombina 96.1 0.057 1.9E-06 56.7 13.9 28 57-84 69-96 (366)
266 2rhm_A Putative kinase; P-loop 96.1 0.0024 8.2E-08 59.9 2.9 27 60-86 3-29 (193)
267 1vht_A Dephospho-COA kinase; s 96.0 0.0034 1.1E-07 60.5 3.6 24 61-84 3-26 (218)
268 2ze6_A Isopentenyl transferase 96.0 0.0031 1.1E-07 62.7 3.4 24 63-86 2-25 (253)
269 3lw7_A Adenylate kinase relate 96.0 0.0032 1.1E-07 57.5 3.3 19 64-82 3-21 (179)
270 1xx6_A Thymidine kinase; NESG, 96.0 0.0056 1.9E-07 58.4 5.0 52 195-251 81-141 (191)
271 2qp9_X Vacuolar protein sortin 96.0 0.013 4.3E-07 61.3 8.1 27 60-86 82-108 (355)
272 1ex7_A Guanylate kinase; subst 96.0 0.0031 1.1E-07 59.9 3.2 23 64-86 3-25 (186)
273 2v54_A DTMP kinase, thymidylat 96.0 0.0037 1.3E-07 59.2 3.6 26 61-86 3-28 (204)
274 3eie_A Vacuolar protein sortin 96.0 0.019 6.7E-07 58.8 9.3 27 60-86 49-75 (322)
275 3vfd_A Spastin; ATPase, microt 96.0 0.029 9.9E-07 59.1 10.7 27 60-86 146-172 (389)
276 3trf_A Shikimate kinase, SK; a 95.9 0.0038 1.3E-07 58.2 3.5 26 61-86 4-29 (185)
277 3cmw_A Protein RECA, recombina 95.9 0.023 8E-07 70.2 11.1 29 58-86 728-756 (1706)
278 2plr_A DTMP kinase, probable t 95.9 0.0043 1.5E-07 58.9 3.8 27 61-87 3-29 (213)
279 2jaq_A Deoxyguanosine kinase; 95.9 0.004 1.4E-07 58.7 3.4 23 64-86 2-24 (205)
280 3iij_A Coilin-interacting nucl 95.9 0.0036 1.2E-07 58.3 3.0 25 61-85 10-34 (180)
281 1u8z_A RAS-related protein RAL 95.8 0.0077 2.6E-07 54.1 4.9 23 64-86 6-28 (168)
282 1z2a_A RAS-related protein RAB 95.8 0.0064 2.2E-07 54.9 4.3 23 64-86 7-29 (168)
283 1c1y_A RAS-related protein RAP 95.8 0.0078 2.7E-07 54.2 4.9 23 64-86 5-27 (167)
284 1kao_A RAP2A; GTP-binding prot 95.8 0.008 2.7E-07 54.0 4.9 23 64-86 5-27 (167)
285 1ly1_A Polynucleotide kinase; 95.8 0.005 1.7E-07 56.8 3.6 22 63-84 3-24 (181)
286 2j9r_A Thymidine kinase; TK1, 95.8 0.017 6E-07 55.9 7.4 52 195-251 101-161 (214)
287 1z0j_A RAB-22, RAS-related pro 95.8 0.0071 2.4E-07 54.7 4.5 23 64-86 8-30 (170)
288 3hu3_A Transitional endoplasmi 95.8 0.01 3.5E-07 64.9 6.4 28 59-86 235-262 (489)
289 2wwf_A Thymidilate kinase, put 95.8 0.0048 1.6E-07 58.8 3.3 27 60-86 8-34 (212)
290 1ek0_A Protein (GTP-binding pr 95.7 0.0075 2.6E-07 54.4 4.4 23 64-86 5-27 (170)
291 1gtv_A TMK, thymidylate kinase 95.7 0.0025 8.5E-08 60.9 1.1 24 64-87 2-25 (214)
292 1via_A Shikimate kinase; struc 95.7 0.0051 1.7E-07 57.0 3.2 23 64-86 6-28 (175)
293 2c95_A Adenylate kinase 1; tra 95.7 0.005 1.7E-07 57.8 3.0 27 60-86 7-33 (196)
294 4b4t_J 26S protease regulatory 95.7 0.04 1.4E-06 58.5 10.2 27 60-86 180-206 (405)
295 1uf9_A TT1252 protein; P-loop, 95.7 0.0055 1.9E-07 57.8 3.3 24 62-85 8-31 (203)
296 1xjc_A MOBB protein homolog; s 95.6 0.0056 1.9E-07 57.2 3.2 25 63-87 5-29 (169)
297 2erx_A GTP-binding protein DI- 95.6 0.012 4E-07 53.3 5.2 23 64-86 5-27 (172)
298 3k53_A Ferrous iron transport 95.6 0.0048 1.6E-07 61.8 2.8 23 64-86 5-27 (271)
299 1nn5_A Similar to deoxythymidy 95.6 0.0056 1.9E-07 58.3 3.2 27 60-86 7-33 (215)
300 2orv_A Thymidine kinase; TP4A 95.6 0.033 1.1E-06 54.6 8.6 53 193-251 88-149 (234)
301 4dsu_A GTPase KRAS, isoform 2B 95.6 0.011 3.6E-07 54.6 4.9 23 64-86 6-28 (189)
302 1tev_A UMP-CMP kinase; ploop, 95.6 0.007 2.4E-07 56.5 3.7 24 62-85 3-26 (196)
303 1nks_A Adenylate kinase; therm 95.6 0.0057 1.9E-07 57.0 3.0 23 64-86 3-25 (194)
304 2ce2_X GTPase HRAS; signaling 95.6 0.0081 2.8E-07 53.8 4.0 23 64-86 5-27 (166)
305 1ky3_A GTP-binding protein YPT 95.6 0.0079 2.7E-07 55.0 3.9 23 64-86 10-32 (182)
306 1z08_A RAS-related protein RAB 95.6 0.0089 3E-07 54.1 4.2 23 64-86 8-30 (170)
307 1wms_A RAB-9, RAB9, RAS-relate 95.6 0.0083 2.8E-07 54.8 4.0 23 64-86 9-31 (177)
308 2ew1_A RAS-related protein RAB 95.5 0.012 4E-07 56.0 5.1 23 64-86 28-50 (201)
309 3co5_A Putative two-component 95.5 0.022 7.4E-07 51.2 6.6 42 195-237 75-116 (143)
310 2fn4_A P23, RAS-related protei 95.5 0.0087 3E-07 54.7 4.0 23 64-86 11-33 (181)
311 3tw8_B RAS-related protein RAB 95.5 0.0092 3.2E-07 54.5 4.1 23 64-86 11-33 (181)
312 2bcg_Y Protein YP2, GTP-bindin 95.5 0.013 4.6E-07 55.2 5.3 23 64-86 10-32 (206)
313 2ged_A SR-beta, signal recogni 95.5 0.0066 2.2E-07 56.6 3.0 23 64-86 50-72 (193)
314 4b4t_L 26S protease subunit RP 95.4 0.053 1.8E-06 58.2 10.4 28 59-86 212-239 (437)
315 2r8r_A Sensor protein; KDPD, P 95.4 0.027 9.1E-07 55.1 7.3 45 191-235 80-125 (228)
316 1ko7_A HPR kinase/phosphatase; 95.4 0.012 3.9E-07 60.5 4.9 37 48-85 131-167 (314)
317 1ksh_A ARF-like protein 2; sma 95.4 0.016 5.4E-07 53.6 5.5 24 63-86 19-42 (186)
318 2nzj_A GTP-binding protein REM 95.4 0.0077 2.6E-07 54.8 3.2 23 64-86 6-28 (175)
319 2bwj_A Adenylate kinase 5; pho 95.4 0.0061 2.1E-07 57.3 2.6 27 60-86 10-36 (199)
320 1aky_A Adenylate kinase; ATP:A 95.4 0.0086 2.9E-07 57.7 3.6 27 60-86 2-28 (220)
321 2bov_A RAla, RAS-related prote 95.4 0.013 4.6E-07 54.9 4.9 23 64-86 16-38 (206)
322 3clv_A RAB5 protein, putative; 95.4 0.011 3.7E-07 55.0 4.2 23 64-86 9-31 (208)
323 1jal_A YCHF protein; nucleotid 95.4 0.013 4.4E-07 61.5 5.1 40 63-102 3-48 (363)
324 2a9k_A RAS-related protein RAL 95.3 0.014 4.9E-07 53.5 4.9 23 64-86 20-42 (187)
325 3q72_A GTP-binding protein RAD 95.3 0.0065 2.2E-07 54.9 2.4 22 65-86 5-26 (166)
326 4b4t_H 26S protease regulatory 95.3 0.055 1.9E-06 58.3 10.0 28 59-86 240-267 (467)
327 1mh1_A RAC1; GTP-binding, GTPa 95.3 0.018 6.1E-07 52.9 5.5 23 64-86 7-29 (186)
328 2dyk_A GTP-binding protein; GT 95.3 0.008 2.7E-07 53.9 3.0 23 64-86 3-25 (161)
329 1r2q_A RAS-related protein RAB 95.3 0.013 4.5E-07 52.8 4.4 23 64-86 8-30 (170)
330 2z0h_A DTMP kinase, thymidylat 95.3 0.0089 3.1E-07 56.0 3.4 23 64-86 2-24 (197)
331 3bc1_A RAS-related protein RAB 95.3 0.012 4.1E-07 54.4 4.2 23 64-86 13-35 (195)
332 3q85_A GTP-binding protein REM 95.3 0.0088 3E-07 54.2 3.2 22 65-86 5-26 (169)
333 1g16_A RAS-related protein SEC 95.3 0.0091 3.1E-07 54.0 3.3 22 65-86 6-27 (170)
334 3kkq_A RAS-related protein M-R 95.3 0.016 5.3E-07 53.4 4.9 23 64-86 20-42 (183)
335 3ake_A Cytidylate kinase; CMP 95.2 0.009 3.1E-07 56.5 3.2 23 64-86 4-26 (208)
336 1zd8_A GTP:AMP phosphotransfer 95.2 0.0092 3.2E-07 57.8 3.2 27 60-86 5-31 (227)
337 1z0f_A RAB14, member RAS oncog 95.2 0.013 4.6E-07 53.3 4.1 23 64-86 17-39 (179)
338 4ag6_A VIRB4 ATPase, type IV s 95.2 0.007 2.4E-07 64.0 2.4 45 195-239 262-309 (392)
339 2vli_A Antibiotic resistance p 95.2 0.0073 2.5E-07 56.0 2.3 26 61-86 4-29 (183)
340 2a5j_A RAS-related protein RAB 95.2 0.019 6.4E-07 53.6 5.1 23 64-86 23-45 (191)
341 2oil_A CATX-8, RAS-related pro 95.1 0.014 4.8E-07 54.4 4.1 23 64-86 27-49 (193)
342 3b1v_A Ferrous iron uptake tra 95.1 0.0098 3.4E-07 59.8 3.2 23 64-86 5-27 (272)
343 3t5g_A GTP-binding protein RHE 95.1 0.016 5.4E-07 53.3 4.5 23 64-86 8-30 (181)
344 3con_A GTPase NRAS; structural 95.1 0.018 6.1E-07 53.4 4.8 23 64-86 23-45 (190)
345 2cdn_A Adenylate kinase; phosp 95.1 0.012 4.1E-07 55.8 3.6 26 61-86 19-44 (201)
346 2y8e_A RAB-protein 6, GH09086P 95.1 0.013 4.4E-07 53.4 3.8 23 64-86 16-38 (179)
347 1m7b_A RND3/RHOE small GTP-bin 95.1 0.016 5.5E-07 53.7 4.4 23 64-86 9-31 (184)
348 2fg5_A RAB-22B, RAS-related pr 95.1 0.015 5E-07 54.4 4.1 23 64-86 25-47 (192)
349 1fzq_A ADP-ribosylation factor 95.1 0.0085 2.9E-07 55.7 2.4 22 64-85 18-39 (181)
350 1svi_A GTP-binding protein YSX 95.1 0.009 3.1E-07 55.7 2.6 23 64-86 25-47 (195)
351 2lkc_A Translation initiation 95.1 0.013 4.4E-07 53.5 3.7 25 62-86 8-32 (178)
352 2q3h_A RAS homolog gene family 95.1 0.019 6.5E-07 53.9 4.9 23 64-86 22-44 (201)
353 3fb4_A Adenylate kinase; psych 95.1 0.011 3.9E-07 56.4 3.4 23 64-86 2-24 (216)
354 3lxw_A GTPase IMAP family memb 95.0 0.011 3.7E-07 58.4 3.2 23 64-86 23-45 (247)
355 2efe_B Small GTP-binding prote 95.0 0.017 5.7E-07 52.9 4.3 23 64-86 14-36 (181)
356 2pbr_A DTMP kinase, thymidylat 95.0 0.012 4.1E-07 54.9 3.4 23 64-86 2-24 (195)
357 1vg8_A RAS-related protein RAB 95.0 0.017 5.9E-07 54.3 4.4 23 64-86 10-32 (207)
358 3oes_A GTPase rhebl1; small GT 95.0 0.018 6.1E-07 54.3 4.5 24 64-87 26-49 (201)
359 2bme_A RAB4A, RAS-related prot 95.0 0.014 4.8E-07 53.8 3.7 23 64-86 12-34 (186)
360 3pqc_A Probable GTP-binding pr 95.0 0.0097 3.3E-07 55.2 2.6 23 64-86 25-47 (195)
361 3reg_A RHO-like small GTPase; 95.0 0.02 6.8E-07 53.4 4.8 23 64-86 25-47 (194)
362 1ukz_A Uridylate kinase; trans 95.0 0.013 4.4E-07 55.5 3.5 25 62-86 15-39 (203)
363 2hxs_A RAB-26, RAS-related pro 95.0 0.012 4.2E-07 53.7 3.2 23 64-86 8-30 (178)
364 3cph_A RAS-related protein SEC 95.0 0.027 9.2E-07 53.2 5.7 23 64-86 22-44 (213)
365 3tkl_A RAS-related protein RAB 95.0 0.018 6.2E-07 53.5 4.4 23 64-86 18-40 (196)
366 1upt_A ARL1, ADP-ribosylation 94.9 0.012 4E-07 53.4 2.9 23 64-86 9-31 (171)
367 1e6c_A Shikimate kinase; phosp 94.9 0.011 3.9E-07 54.1 2.9 23 64-86 4-26 (173)
368 2cxx_A Probable GTP-binding pr 94.9 0.01 3.6E-07 54.8 2.6 22 65-86 4-25 (190)
369 3a4m_A L-seryl-tRNA(SEC) kinas 94.9 0.014 5E-07 57.9 3.8 27 60-86 2-28 (260)
370 1zak_A Adenylate kinase; ATP:A 94.9 0.01 3.6E-07 57.2 2.6 26 61-86 4-29 (222)
371 2gf0_A GTP-binding protein DI- 94.9 0.021 7E-07 53.3 4.6 23 64-86 10-32 (199)
372 3dl0_A Adenylate kinase; phosp 94.9 0.013 4.6E-07 56.0 3.4 23 64-86 2-24 (216)
373 2gf9_A RAS-related protein RAB 94.9 0.018 6.2E-07 53.5 4.2 23 64-86 24-46 (189)
374 1zuh_A Shikimate kinase; alpha 94.9 0.014 4.9E-07 53.4 3.4 24 63-86 8-31 (168)
375 1r8s_A ADP-ribosylation factor 94.9 0.012 4.2E-07 52.9 2.9 21 65-85 3-23 (164)
376 3cmw_A Protein RECA, recombina 94.9 0.3 1E-05 60.6 15.7 35 51-85 370-406 (1706)
377 2pt5_A Shikimate kinase, SK; a 94.9 0.015 5.1E-07 53.1 3.4 23 64-86 2-24 (168)
378 1zbd_A Rabphilin-3A; G protein 94.8 0.021 7.1E-07 53.7 4.5 23 64-86 10-32 (203)
379 3bwd_D RAC-like GTP-binding pr 94.8 0.015 5.2E-07 53.3 3.4 23 64-86 10-32 (182)
380 1qf9_A UMP/CMP kinase, protein 94.8 0.014 4.9E-07 54.2 3.3 25 62-86 6-30 (194)
381 3c5c_A RAS-like protein 12; GD 94.8 0.024 8.3E-07 52.8 4.9 23 64-86 23-45 (187)
382 3tlx_A Adenylate kinase 2; str 94.8 0.016 5.4E-07 57.1 3.7 25 61-85 28-52 (243)
383 1x3s_A RAS-related protein RAB 94.8 0.021 7.2E-07 52.9 4.4 23 64-86 17-39 (195)
384 2qmh_A HPR kinase/phosphorylas 94.8 0.024 8.2E-07 54.3 4.8 38 48-86 21-58 (205)
385 2atv_A RERG, RAS-like estrogen 94.8 0.025 8.7E-07 52.9 4.9 23 64-86 30-52 (196)
386 2g6b_A RAS-related protein RAB 94.8 0.013 4.6E-07 53.5 2.9 23 64-86 12-34 (180)
387 3cmu_A Protein RECA, recombina 94.8 0.071 2.4E-06 66.9 10.1 35 51-85 370-406 (2050)
388 2iyv_A Shikimate kinase, SK; t 94.8 0.012 4.2E-07 54.7 2.7 24 63-86 3-26 (184)
389 3t1o_A Gliding protein MGLA; G 94.8 0.015 5.2E-07 53.9 3.3 24 64-87 16-39 (198)
390 1zd9_A ADP-ribosylation factor 94.8 0.021 7E-07 53.2 4.2 23 64-86 24-46 (188)
391 3a8t_A Adenylate isopentenyltr 94.7 0.023 7.8E-07 58.9 4.8 26 61-86 39-64 (339)
392 1moz_A ARL1, ADP-ribosylation 94.7 0.0086 2.9E-07 55.1 1.4 21 64-84 20-40 (183)
393 1wf3_A GTP-binding protein; GT 94.7 0.015 5.2E-07 59.3 3.4 26 60-86 6-31 (301)
394 1z06_A RAS-related protein RAB 94.7 0.022 7.4E-07 52.9 4.1 23 64-86 22-44 (189)
395 1nrj_B SR-beta, signal recogni 94.6 0.015 5.1E-07 55.4 2.9 23 64-86 14-36 (218)
396 3iev_A GTP-binding protein ERA 94.6 0.017 5.8E-07 59.1 3.4 23 64-86 12-34 (308)
397 3t5d_A Septin-7; GTP-binding p 94.6 0.013 4.5E-07 58.7 2.5 22 65-86 11-32 (274)
398 3iby_A Ferrous iron transport 94.6 0.015 5E-07 57.9 2.8 23 64-86 3-25 (256)
399 1gwn_A RHO-related GTP-binding 94.6 0.026 8.9E-07 53.7 4.4 23 64-86 30-52 (205)
400 4bas_A ADP-ribosylation factor 94.5 0.022 7.6E-07 53.0 3.8 23 64-86 19-41 (199)
401 1jbk_A CLPB protein; beta barr 94.5 0.021 7.1E-07 52.4 3.6 27 60-86 41-67 (195)
402 3cbq_A GTP-binding protein REM 94.5 0.014 4.6E-07 55.1 2.3 22 64-85 25-46 (195)
403 1uj2_A Uridine-cytidine kinase 94.5 0.019 6.4E-07 56.7 3.4 24 63-86 23-46 (252)
404 2xtp_A GTPase IMAP family memb 94.5 0.016 5.6E-07 57.2 2.9 23 64-86 24-46 (260)
405 2p5s_A RAS and EF-hand domain 94.5 0.021 7.3E-07 53.6 3.5 23 64-86 30-52 (199)
406 2grj_A Dephospho-COA kinase; T 94.4 0.02 7E-07 54.4 3.4 24 62-85 12-35 (192)
407 2dby_A GTP-binding protein; GD 94.4 0.017 5.8E-07 60.7 2.9 21 65-85 4-24 (368)
408 3v9p_A DTMP kinase, thymidylat 94.4 0.017 5.9E-07 56.5 2.8 29 59-87 22-50 (227)
409 3dm5_A SRP54, signal recogniti 94.4 0.35 1.2E-05 51.9 13.2 27 61-87 99-125 (443)
410 3cpj_B GTP-binding protein YPT 94.4 0.038 1.3E-06 53.0 5.1 23 64-86 15-37 (223)
411 3a1s_A Iron(II) transport prot 94.4 0.02 6.8E-07 57.0 3.2 23 64-86 7-29 (258)
412 4fcw_A Chaperone protein CLPB; 94.4 0.021 7.2E-07 57.6 3.5 26 62-87 47-72 (311)
413 3u61_B DNA polymerase accessor 94.4 0.13 4.5E-06 52.2 9.5 42 195-238 105-147 (324)
414 2il1_A RAB12; G-protein, GDP, 94.4 0.018 6.2E-07 53.8 2.8 23 64-86 28-50 (192)
415 3umf_A Adenylate kinase; rossm 94.4 0.023 7.9E-07 55.2 3.5 27 60-86 27-53 (217)
416 2xb4_A Adenylate kinase; ATP-b 94.3 0.022 7.6E-07 55.1 3.4 23 64-86 2-24 (223)
417 2fv8_A H6, RHO-related GTP-bin 94.3 0.023 7.7E-07 53.9 3.4 23 64-86 27-49 (207)
418 3be4_A Adenylate kinase; malar 94.3 0.02 6.9E-07 55.1 3.0 26 61-86 4-29 (217)
419 2wsm_A Hydrogenase expression/ 94.3 0.019 6.5E-07 54.9 2.8 23 64-86 32-54 (221)
420 4dhe_A Probable GTP-binding pr 94.3 0.011 3.8E-07 56.4 1.2 23 64-86 31-53 (223)
421 2cjw_A GTP-binding protein GEM 94.3 0.02 6.9E-07 53.8 2.9 22 64-85 8-29 (192)
422 1jwy_B Dynamin A GTPase domain 94.3 0.019 6.5E-07 58.3 2.9 23 64-86 26-48 (315)
423 3i8s_A Ferrous iron transport 94.3 0.019 6.6E-07 57.6 2.9 23 64-86 5-27 (274)
424 2gco_A H9, RHO-related GTP-bin 94.2 0.027 9.1E-07 53.1 3.7 23 64-86 27-49 (201)
425 4edh_A DTMP kinase, thymidylat 94.2 0.027 9.1E-07 54.5 3.7 28 60-87 4-31 (213)
426 2j1l_A RHO-related GTP-binding 94.2 0.029 1E-06 53.5 4.0 23 64-86 36-58 (214)
427 1zj6_A ADP-ribosylation factor 94.2 0.021 7.1E-07 53.0 2.8 22 64-85 18-39 (187)
428 2atx_A Small GTP binding prote 94.2 0.027 9.2E-07 52.5 3.6 23 64-86 20-42 (194)
429 3dz8_A RAS-related protein RAB 94.2 0.019 6.5E-07 53.5 2.5 23 64-86 25-47 (191)
430 2o52_A RAS-related protein RAB 94.2 0.021 7.1E-07 53.9 2.8 23 64-86 27-49 (200)
431 2qu8_A Putative nucleolar GTP- 94.2 0.022 7.4E-07 55.0 3.0 22 64-85 31-52 (228)
432 2h57_A ADP-ribosylation factor 94.2 0.016 5.6E-07 53.9 2.0 23 64-86 23-45 (190)
433 4gzl_A RAS-related C3 botulinu 94.2 0.035 1.2E-06 52.5 4.4 23 64-86 32-54 (204)
434 2f7s_A C25KG, RAS-related prot 94.2 0.025 8.4E-07 53.8 3.3 23 64-86 27-49 (217)
435 2f6r_A COA synthase, bifunctio 94.2 0.022 7.5E-07 57.4 3.0 23 62-84 75-97 (281)
436 1a7j_A Phosphoribulokinase; tr 94.1 0.013 4.5E-07 59.5 1.3 26 61-86 4-29 (290)
437 2h17_A ADP-ribosylation factor 94.1 0.02 6.7E-07 52.9 2.4 23 64-86 23-45 (181)
438 2iwr_A Centaurin gamma 1; ANK 94.0 0.019 6.6E-07 52.5 2.2 23 64-86 9-31 (178)
439 1ltq_A Polynucleotide kinase; 94.0 0.028 9.5E-07 56.7 3.6 23 63-85 3-25 (301)
440 3exa_A TRNA delta(2)-isopenten 94.0 0.04 1.4E-06 56.5 4.6 25 62-86 3-27 (322)
441 1qvr_A CLPB protein; coiled co 94.0 0.068 2.3E-06 62.4 7.2 25 63-87 589-613 (854)
442 1ak2_A Adenylate kinase isoenz 94.0 0.03 1E-06 54.4 3.6 26 61-86 15-40 (233)
443 1e4v_A Adenylate kinase; trans 94.0 0.025 8.6E-07 54.1 3.0 23 64-86 2-24 (214)
444 2p65_A Hypothetical protein PF 93.9 0.026 8.9E-07 51.7 2.8 26 61-86 42-67 (187)
445 2aka_B Dynamin-1; fusion prote 93.9 0.023 7.9E-07 57.1 2.6 23 64-86 28-50 (299)
446 3q3j_B RHO-related GTP-binding 93.9 0.042 1.4E-06 52.5 4.3 23 64-86 29-51 (214)
447 2fh5_B SR-beta, signal recogni 93.9 0.027 9.2E-07 53.4 2.9 23 64-86 9-31 (214)
448 2fu5_C RAS-related protein RAB 93.9 0.018 6.2E-07 52.9 1.6 22 64-85 10-31 (183)
449 4djt_A GTP-binding nuclear pro 93.8 0.021 7.1E-07 54.4 2.0 23 64-86 13-35 (218)
450 3lv8_A DTMP kinase, thymidylat 93.8 0.03 1E-06 55.1 3.2 27 61-87 26-52 (236)
451 2j0v_A RAC-like GTP-binding pr 93.8 0.037 1.3E-06 52.4 3.8 23 64-86 11-33 (212)
452 2b6h_A ADP-ribosylation factor 93.8 0.025 8.5E-07 53.0 2.4 22 64-85 31-52 (192)
453 3zvl_A Bifunctional polynucleo 93.8 0.03 1E-06 59.8 3.3 27 59-85 255-281 (416)
454 3llu_A RAS-related GTP-binding 93.8 0.033 1.1E-06 52.2 3.2 24 64-87 22-45 (196)
455 2zts_A Putative uncharacterize 93.8 0.041 1.4E-06 53.3 4.0 59 193-251 133-205 (251)
456 1p5z_B DCK, deoxycytidine kina 93.6 0.026 8.8E-07 56.0 2.4 27 60-86 22-48 (263)
457 1njg_A DNA polymerase III subu 93.6 0.038 1.3E-06 52.5 3.5 43 194-238 125-167 (250)
458 3d3q_A TRNA delta(2)-isopenten 93.6 0.034 1.2E-06 57.7 3.4 24 63-86 8-31 (340)
459 3def_A T7I23.11 protein; chlor 93.6 0.03 1E-06 55.6 2.9 23 64-86 38-60 (262)
460 2h92_A Cytidylate kinase; ross 93.6 0.026 9E-07 54.0 2.3 25 62-86 3-27 (219)
461 3sr0_A Adenylate kinase; phosp 93.6 0.037 1.3E-06 53.2 3.4 23 64-86 2-24 (206)
462 1sky_E F1-ATPase, F1-ATP synth 93.6 0.039 1.3E-06 59.7 3.8 35 51-86 141-175 (473)
463 3tmk_A Thymidylate kinase; pho 93.6 0.035 1.2E-06 53.8 3.2 28 60-87 3-30 (216)
464 3tqf_A HPR(Ser) kinase; transf 93.5 0.057 2E-06 50.5 4.3 35 50-85 5-39 (181)
465 4tmk_A Protein (thymidylate ki 93.5 0.037 1.3E-06 53.5 3.3 27 61-87 2-28 (213)
466 3ld9_A DTMP kinase, thymidylat 93.5 0.043 1.5E-06 53.5 3.7 28 60-87 19-46 (223)
467 2ocp_A DGK, deoxyguanosine kin 93.5 0.039 1.3E-06 53.9 3.4 27 61-87 1-27 (241)
468 2g3y_A GTP-binding protein GEM 93.5 0.038 1.3E-06 53.2 3.2 22 64-85 39-60 (211)
469 3cmu_A Protein RECA, recombina 93.5 0.12 4.3E-06 64.7 8.5 35 52-86 720-756 (2050)
470 1h65_A Chloroplast outer envel 93.4 0.033 1.1E-06 55.5 2.8 23 64-86 41-63 (270)
471 2hf9_A Probable hydrogenase ni 93.3 0.037 1.3E-06 53.0 2.8 23 64-86 40-62 (226)
472 2yc2_C IFT27, small RAB-relate 93.2 0.018 6.3E-07 53.9 0.5 22 64-85 22-43 (208)
473 2hup_A RAS-related protein RAB 93.2 0.037 1.2E-06 52.2 2.6 23 64-86 31-53 (201)
474 2x77_A ADP-ribosylation factor 93.2 0.025 8.7E-07 52.4 1.4 22 64-85 24-45 (189)
475 3crm_A TRNA delta(2)-isopenten 93.2 0.046 1.6E-06 56.3 3.4 24 63-86 6-29 (323)
476 1ypw_A Transitional endoplasmi 93.0 0.009 3.1E-07 69.3 -2.5 32 56-87 505-536 (806)
477 3cnl_A YLQF, putative uncharac 93.0 0.045 1.5E-06 54.6 2.9 25 63-87 100-124 (262)
478 4dcu_A GTP-binding protein ENG 92.8 0.043 1.5E-06 59.2 2.8 53 181-237 88-141 (456)
479 3foz_A TRNA delta(2)-isopenten 92.8 0.063 2.2E-06 54.9 3.8 25 62-86 10-34 (316)
480 3pxi_A Negative regulator of g 92.8 0.21 7.2E-06 57.3 8.5 23 64-86 523-545 (758)
481 4a9a_A Ribosome-interacting GT 92.7 0.079 2.7E-06 55.7 4.5 46 60-105 69-121 (376)
482 1sxj_D Activator 1 41 kDa subu 92.7 0.015 5.1E-07 59.8 -1.1 42 195-238 133-174 (353)
483 2orw_A Thymidine kinase; TMTK, 92.6 0.064 2.2E-06 50.5 3.2 52 195-251 76-136 (184)
484 3eph_A TRNA isopentenyltransfe 92.5 0.064 2.2E-06 56.9 3.4 25 62-86 2-26 (409)
485 3n70_A Transport activator; si 92.4 0.069 2.4E-06 47.8 3.1 43 195-239 76-118 (145)
486 3gmt_A Adenylate kinase; ssgci 92.2 0.071 2.4E-06 52.2 3.2 23 64-86 10-32 (230)
487 2chg_A Replication factor C sm 92.2 0.071 2.4E-06 50.0 3.1 42 195-238 102-143 (226)
488 3syl_A Protein CBBX; photosynt 92.1 0.074 2.5E-06 53.5 3.2 27 60-86 65-91 (309)
489 2r62_A Cell division protease 92.0 0.037 1.3E-06 54.7 0.8 22 65-86 47-68 (268)
490 3p32_A Probable GTPase RV1496/ 92.0 0.083 2.8E-06 55.0 3.6 26 61-86 78-103 (355)
491 2x2e_A Dynamin-1; nitration, h 92.0 0.053 1.8E-06 56.4 2.0 23 64-86 33-55 (353)
492 3th5_A RAS-related C3 botulinu 91.1 0.031 1.1E-06 52.6 0.0 22 64-85 32-53 (204)
493 1d2n_A N-ethylmaleimide-sensit 91.7 0.092 3.1E-06 52.1 3.3 26 60-85 62-87 (272)
494 1wxq_A GTP-binding protein; st 91.7 0.076 2.6E-06 56.3 2.9 79 152-246 181-262 (397)
495 1puj_A YLQF, conserved hypothe 91.7 0.094 3.2E-06 52.9 3.4 25 62-86 120-144 (282)
496 3gj0_A GTP-binding nuclear pro 91.6 0.058 2E-06 51.5 1.8 22 64-85 17-39 (221)
497 3l0i_B RAS-related protein RAB 91.6 0.021 7.1E-07 53.7 -1.4 23 64-86 35-57 (199)
498 3r7w_A Gtpase1, GTP-binding pr 91.6 0.096 3.3E-06 53.3 3.5 23 63-85 4-26 (307)
499 2hjg_A GTP-binding protein ENG 91.5 0.079 2.7E-06 56.7 2.8 22 64-85 5-26 (436)
500 2qgz_A Helicase loader, putati 91.5 0.11 3.6E-06 53.1 3.6 52 193-244 212-265 (308)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=6.2e-50 Score=422.45 Aligned_cols=226 Identities=23% Similarity=0.392 Sum_probs=198.8
Q ss_pred hhhhhhheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCC
Q 046786 27 QNVEDMLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS 106 (604)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~ 106 (604)
+..+.+++..|+++.+....+...+|+|||+++++||+++|+||||||||||||+|+|+++ |++|+|.++|+++.
T Consensus 19 ~~~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~-----p~~G~I~i~G~~i~ 93 (366)
T 3tui_C 19 DDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-----PTEGSVLVDGQELT 93 (366)
T ss_dssp ----CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECS
T ss_pred CCCCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC-----CCceEEEECCEECC
Confidence 3444578888888877654445679999999999999999999999999999999999985 67999999999985
Q ss_pred h-------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcC
Q 046786 107 A-------EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLS 179 (604)
Q Consensus 107 ~-------~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 179 (604)
. ..++.||||||++.+++.+||+||+.++...+ ..++++.+++++++++.+||.+..+ +++.+||
T Consensus 94 ~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~-----~~~~~LS 165 (366)
T 3tui_C 94 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHD-----SYPSNLS 165 (366)
T ss_dssp SCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTT-----CCTTTSC
T ss_pred cCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhc-----CChhhCC
Confidence 2 24678999999999999999999999987654 3466777788999999999998776 5567999
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecCCeEE
Q 046786 180 GGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSDGSSL 258 (604)
Q Consensus 180 gGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v 258 (604)
|||||||+|||||+.+|++|||||||||||+.++..+++.|+++++ .|+|||++||++. .+..+||++++| ++|+++
T Consensus 166 GGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl-~~G~iv 243 (366)
T 3tui_C 166 GGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVI-SNGELI 243 (366)
T ss_dssp HHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEE-ETTEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEE-ECCEEE
Confidence 9999999999999999999999999999999999999999999976 4999999999975 678899999999 899999
Q ss_pred EecChhhHH
Q 046786 259 YFGKGEDVI 267 (604)
Q Consensus 259 ~~G~~~~~~ 267 (604)
+.|+++++.
T Consensus 244 ~~g~~~ev~ 252 (366)
T 3tui_C 244 EQDTVSEVF 252 (366)
T ss_dssp ECCBHHHHH
T ss_pred EEcCHHHHH
Confidence 999998874
No 2
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=5.5e-49 Score=394.35 Aligned_cols=221 Identities=29% Similarity=0.418 Sum_probs=188.5
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~ 108 (604)
++..|+++.+......+.+|+|||+++++||+++|+||||||||||||+|+|+++ |++|+|.++|+++.. .
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~~~~~~~~ 76 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK-----PTEGEVYIDNIKTNDLDDDE 76 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTTCCHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCceEEEECCEEcccCCHHH
Confidence 4556776666543334679999999999999999999999999999999999986 679999999998742 1
Q ss_pred ----ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-cccccCccCCCcCHHHH
Q 046786 109 ----VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCR-NSIIGGRLVRGLSGGER 183 (604)
Q Consensus 109 ----~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~vg~~~~~~LSgGer 183 (604)
.++.+|||+|++.+++.+||+||+.++...+.....+.++..+++.++++.+||.+.. + +++.+||||||
T Consensus 77 ~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~LSgGq~ 151 (235)
T 3tif_A 77 LTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFAN-----HKPNQLSGGQQ 151 (235)
T ss_dssp HHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTT-----CCGGGSCHHHH
T ss_pred HHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhh-----CChhhCCHHHH
Confidence 1346999999999999999999999987654222345666778899999999998643 5 55679999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecC
Q 046786 184 KRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGK 262 (604)
Q Consensus 184 qRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~ 262 (604)
|||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++. +..++|++++| ++|+++..++
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l-~~G~i~~~~~ 228 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYL-KDGEVEREEK 228 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEE-ETTEEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEE-ECCEEEEEcC
Confidence 9999999999999999999999999999999999999999865 999999999985 45889999999 8999999998
Q ss_pred hhhH
Q 046786 263 GEDV 266 (604)
Q Consensus 263 ~~~~ 266 (604)
+++.
T Consensus 229 ~~~~ 232 (235)
T 3tif_A 229 LRGF 232 (235)
T ss_dssp CC--
T ss_pred hhhh
Confidence 7764
No 3
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2.9e-48 Score=394.99 Aligned_cols=217 Identities=28% Similarity=0.499 Sum_probs=190.0
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCC--h--
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS--A-- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~--~-- 107 (604)
+++..|+++.+ +++.+|+|||+++++||+++|+||||||||||||+|+|+++ |++|+|.++|+++. .
T Consensus 24 ~l~i~~l~~~y----~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~i~~~~~~ 94 (263)
T 2olj_A 24 MIDVHQLKKSF----GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED-----FDEGEIIIDGINLKAKDTN 94 (263)
T ss_dssp SEEEEEEEEEE----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEESSSTTCC
T ss_pred eEEEEeEEEEE----CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC-----CCCcEEEECCEECCCcccc
Confidence 57777776655 34579999999999999999999999999999999999985 67999999999873 1
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHH-HhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHH
Q 046786 108 --EVKRRTGFVAQNNVFYPHLTVAETLVFTA-LLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERK 184 (604)
Q Consensus 108 --~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 184 (604)
..++.+|||+|++.+++.+||+||+.++. ... ..+.++..++++++++.+||.+..+ +.+.+|||||||
T Consensus 95 ~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~-----~~~~~LSgGqkQ 166 (263)
T 2olj_A 95 LNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAH-----AYPDSLSGGQAQ 166 (263)
T ss_dssp HHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTT-----SCGGGSCHHHHH
T ss_pred HHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhc-----CChhhCCHHHHH
Confidence 24567999999999999999999999964 332 2345555678899999999988776 456699999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChh
Q 046786 185 RISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGE 264 (604)
Q Consensus 185 Rvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~ 264 (604)
||+||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. .+..++|++++| ++|++++.|+++
T Consensus 167 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l-~~G~i~~~g~~~ 244 (263)
T 2olj_A 167 RVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFM-DGGYIIEEGKPE 244 (263)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEE-ETTEEEEEECHH
T ss_pred HHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEE-ECCEEEEECCHH
Confidence 999999999999999999999999999999999999999877999999999975 577899999999 899999999988
Q ss_pred hHH
Q 046786 265 DVI 267 (604)
Q Consensus 265 ~~~ 267 (604)
++.
T Consensus 245 ~~~ 247 (263)
T 2olj_A 245 DLF 247 (263)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 4
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=2.8e-48 Score=412.29 Aligned_cols=217 Identities=32% Similarity=0.551 Sum_probs=194.4
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--hcc
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--EVK 110 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--~~~ 110 (604)
++..|+++.+ +++.+|+|||+++++||+++|+||||||||||||+|+|+++ |++|+|.++|+++.. ..+
T Consensus 4 l~~~~l~~~y----g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-----p~~G~I~i~G~~~~~~~~~~ 74 (381)
T 3rlf_A 4 VQLQNVTKAW----GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET-----ITSGDLFIGEKRMNDTPPAE 74 (381)
T ss_dssp EEEEEEEEEE----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTTCCGGG
T ss_pred EEEEeEEEEE----CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC-----CCCeEEEECCEECCCCCHHH
Confidence 5556665544 45679999999999999999999999999999999999986 679999999999853 345
Q ss_pred ccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHH
Q 046786 111 RRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQ 190 (604)
Q Consensus 111 ~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~ 190 (604)
+.+|||+|+..++|++||+||+.|+.+.+ ..++++.+++++++++.+||.+..+ +++.+|||||||||+|||
T Consensus 75 r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~-----r~p~~LSGGqrQRVaiAr 146 (381)
T 3rlf_A 75 RGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLD-----RKPKALSGGQRQRVAIGR 146 (381)
T ss_dssp SCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTT-----CCGGGSCHHHHHHHHHHH
T ss_pred CCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhc-----CChhHCCHHHHHHHHHHH
Confidence 78999999999999999999999988764 3567777789999999999998776 566799999999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHHH
Q 046786 191 ELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVIN 268 (604)
Q Consensus 191 ~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~~ 268 (604)
||+.+|++|||||||||||+..+.++.+.|+++.++ |+|+|++|||+. ++..++|++++| ++|+++..|+++++.+
T Consensus 147 AL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl-~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVL-DAGRVAQVGKPLELYH 223 (381)
T ss_dssp HHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEE-ETTEEEEEECHHHHHH
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEE-ECCEEEEEeCHHHHHh
Confidence 999999999999999999999999999999999765 999999999975 688999999999 8999999999998753
No 5
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=3.9e-48 Score=394.28 Aligned_cols=217 Identities=27% Similarity=0.442 Sum_probs=189.2
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCC-----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS----- 106 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~----- 106 (604)
+++..|+++.+ +++.+|+|||+++++||+++|+||||||||||||+|+|+++ |++|+|.++|+++.
T Consensus 6 ~l~i~~l~~~y----~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~~~~~ 76 (262)
T 1b0u_A 6 KLHVIDLHKRY----GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK-----PSEGAIIVNGQNINLVRDK 76 (262)
T ss_dssp CEEEEEEEEEE----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECCEEECT
T ss_pred eEEEeeEEEEE----CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEccccccc
Confidence 46667766654 34579999999999999999999999999999999999985 67999999999875
Q ss_pred ------------hhccccEEEEecCCCCCCCCCHHHHHHHHH-HhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccC
Q 046786 107 ------------AEVKRRTGFVAQNNVFYPHLTVAETLVFTA-LLRLPNSLKREEKVLHAEAVINQLGLARC-RNSIIGG 172 (604)
Q Consensus 107 ------------~~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~ 172 (604)
...++.+|||+|++.+++.+||+||+.++. ..+ ..+.++..++++++++.+||.+. .+
T Consensus 77 ~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~----- 148 (262)
T 1b0u_A 77 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQG----- 148 (262)
T ss_dssp TSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHT-----
T ss_pred cccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhc-----
Confidence 124567999999999999999999999864 332 23445556788999999999887 66
Q ss_pred ccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEe
Q 046786 173 RLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLS 252 (604)
Q Consensus 173 ~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~ 252 (604)
+++.+|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+..++|++++|
T Consensus 149 ~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l- 226 (262)
T 1b0u_A 149 KYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFL- 226 (262)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEEE-
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-
Confidence 456699999999999999999999999999999999999999999999999878999999999975 677899999999
Q ss_pred cCCeEEEecChhhHH
Q 046786 253 SDGSSLYFGKGEDVI 267 (604)
Q Consensus 253 ~~G~~v~~G~~~~~~ 267 (604)
++|+++..|+++++.
T Consensus 227 ~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 227 HQGKIEEEGDPEQVF 241 (262)
T ss_dssp ETTEEEEEECHHHHH
T ss_pred ECCEEEEeCCHHHHH
Confidence 899999999988764
No 6
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.9e-48 Score=410.87 Aligned_cols=218 Identities=27% Similarity=0.480 Sum_probs=191.0
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeC----Ch
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQF----SA 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~----~~ 107 (604)
+++..|+++.+ +++.+|+|||+++++||+++|+||||||||||||+|+|+.+ |++|+|.++|+++ ..
T Consensus 4 ~l~i~~ls~~y----~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-----p~~G~I~i~G~~i~~~~~~ 74 (359)
T 3fvq_A 4 ALHIGHLSKSF----QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ-----PDSGEISLSGKTIFSKNTN 74 (359)
T ss_dssp CEEEEEEEEEE----TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEEESSSCB
T ss_pred EEEEEeEEEEE----CCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC-----CCCcEEEECCEECcccccc
Confidence 45666766554 45679999999999999999999999999999999999985 6799999999987 22
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHH
Q 046786 108 --EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKR 185 (604)
Q Consensus 108 --~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 185 (604)
..++.+|||+|+..++|++||+||+.|+...+ ..++++.+++++++++.+||.+..| +++.+||||||||
T Consensus 75 ~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~-----r~~~~LSGGq~QR 146 (359)
T 3fvq_A 75 LPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAG-----RYPHELSGGQQQR 146 (359)
T ss_dssp CCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTT-----SCGGGSCHHHHHH
T ss_pred cchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhc-----CChhhCCHHHHHH
Confidence 34678999999999999999999999975433 2345566678999999999998777 5567999999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChh
Q 046786 186 ISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLA-EGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGE 264 (604)
Q Consensus 186 vsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la-~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~ 264 (604)
|+|||||+.+|++|||||||||||+..+.++.+.|+++. +.|+|||++|||+. ++..++|++++| ++|+++..|+++
T Consensus 147 ValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl-~~G~i~~~g~~~ 224 (359)
T 3fvq_A 147 AALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVM-KQGRILQTASPH 224 (359)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEE-ETTEEEEEECHH
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEE-ECCEEEEEeCHH
Confidence 999999999999999999999999999999999888875 46999999999975 688999999999 899999999999
Q ss_pred hHHH
Q 046786 265 DVIN 268 (604)
Q Consensus 265 ~~~~ 268 (604)
++.+
T Consensus 225 el~~ 228 (359)
T 3fvq_A 225 ELYR 228 (359)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8753
No 7
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=4.5e-48 Score=395.88 Aligned_cols=219 Identities=26% Similarity=0.442 Sum_probs=189.7
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCC--h--
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS--A-- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~--~-- 107 (604)
+++..|+++.+. +.+.+|+|||+++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++. .
T Consensus 7 ~l~i~~ls~~y~---~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~-----p~~G~I~~~G~~i~~~~~~ 78 (275)
T 3gfo_A 7 ILKVEELNYNYS---DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK-----PSSGRILFDNKPIDYSRKG 78 (275)
T ss_dssp EEEEEEEEEECT---TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECCCSHHH
T ss_pred EEEEEEEEEEEC---CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCeEEEECCEECCccccc
Confidence 466677665542 23459999999999999999999999999999999999985 67999999999983 2
Q ss_pred --hccccEEEEecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHH
Q 046786 108 --EVKRRTGFVAQNNV-FYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERK 184 (604)
Q Consensus 108 --~~~~~i~yv~Q~~~-l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 184 (604)
..++.+|||||++. .+..+||+||+.|+.... ..++++..++++++++.+||.+..+ +.+.+|||||||
T Consensus 79 ~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~-----~~~~~LSgGqkQ 150 (275)
T 3gfo_A 79 IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKD-----KPTHCLSFGQKK 150 (275)
T ss_dssp HHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTT-----SBGGGSCHHHHH
T ss_pred HHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhc-----CCcccCCHHHHH
Confidence 35678999999863 344789999999987643 3456677788999999999988777 456699999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecCh
Q 046786 185 RISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLA-EGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKG 263 (604)
Q Consensus 185 Rvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la-~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~ 263 (604)
||+||+||+.+|++|||||||+|||+.++..+++.|++++ ++|+|||++||++. .+..++|++++| ++|++++.|++
T Consensus 151 Rv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l-~~G~i~~~g~~ 228 (275)
T 3gfo_A 151 RVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVM-KEGRVILQGNP 228 (275)
T ss_dssp HHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEE-ETTEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEE-ECCEEEEECCH
Confidence 9999999999999999999999999999999999999998 56999999999986 577889999999 89999999999
Q ss_pred hhHHH
Q 046786 264 EDVIN 268 (604)
Q Consensus 264 ~~~~~ 268 (604)
+++.+
T Consensus 229 ~~~~~ 233 (275)
T 3gfo_A 229 KEVFA 233 (275)
T ss_dssp HHHTH
T ss_pred HHHhc
Confidence 88753
No 8
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.5e-47 Score=388.41 Aligned_cols=220 Identities=28% Similarity=0.410 Sum_probs=191.5
Q ss_pred hhheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh---
Q 046786 31 DMLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--- 107 (604)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--- 107 (604)
.+++..|+++.+ +++.+|+|||+++++||+++|+||||||||||||+|+|+++ |++|+|.++|+++..
T Consensus 14 ~~l~i~~l~~~y----~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~~~~~~~ 84 (256)
T 1vpl_A 14 GAVVVKDLRKRI----GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK-----PSSGIVTVFGKNVVEEPH 84 (256)
T ss_dssp CCEEEEEEEEEE----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEETTTCHH
T ss_pred CeEEEEEEEEEE----CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECCccHH
Confidence 346667776654 34679999999999999999999999999999999999985 679999999998753
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHH
Q 046786 108 EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRIS 187 (604)
Q Consensus 108 ~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvs 187 (604)
..++.+|||+|++.+++.+||+||+.+..... ..+.++..++++++++.+||.+..++ .+++|||||||||+
T Consensus 85 ~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~~~LSgGq~qRv~ 156 (256)
T 1vpl_A 85 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKD-----RVSTYSKGMVRKLL 156 (256)
T ss_dssp HHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGS-----BGGGCCHHHHHHHH
T ss_pred HHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCchHhcC-----ChhhCCHHHHHHHH
Confidence 35678999999999999999999999976543 23344455678999999999887774 45699999999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 188 IGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 188 ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||++. .+..++|++++| ++|++++.|+++++.
T Consensus 157 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l-~~G~i~~~g~~~~~~ 234 (256)
T 1vpl_A 157 IARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALI-HNGTIVETGTVEELK 234 (256)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEE-ETTEEEEEEEHHHHH
T ss_pred HHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEE-ECCEEEEecCHHHHH
Confidence 999999999999999999999999999999999999878999999999975 577889999999 899999999988875
Q ss_pred HH
Q 046786 268 NY 269 (604)
Q Consensus 268 ~~ 269 (604)
+.
T Consensus 235 ~~ 236 (256)
T 1vpl_A 235 ER 236 (256)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 9
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1e-47 Score=382.43 Aligned_cols=212 Identities=34% Similarity=0.499 Sum_probs=184.0
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+++.+ +++.+|+|+|+++++||+++|+||||||||||||+|+|+++ |++|+|.++|+++..
T Consensus 4 ~l~~~~l~~~y----~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~~~ 74 (224)
T 2pcj_A 4 ILRAENIKKVI----RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA-----PTEGKVFLEGKEVDYTNEK 74 (224)
T ss_dssp EEEEEEEEEEE----TTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC-----CSEEEEEETTEECCSSCHH
T ss_pred EEEEEeEEEEE----CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECCCCCHH
Confidence 45666766554 33679999999999999999999999999999999999985 679999999998742
Q ss_pred ---hcc-ccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHH
Q 046786 108 ---EVK-RRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGER 183 (604)
Q Consensus 108 ---~~~-~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 183 (604)
..+ +.+|||+|++.+++.+||+||+.++...+ ..++++..++++++++.+||.+..+ +++.+||||||
T Consensus 75 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgGq~ 146 (224)
T 2pcj_A 75 ELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLS-----RKPYELSGGEQ 146 (224)
T ss_dssp HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTT-----CCGGGSCHHHH
T ss_pred HHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhh-----CChhhCCHHHH
Confidence 122 57999999999999999999999976543 2344555678899999999988776 45669999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecCh
Q 046786 184 KRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKG 263 (604)
Q Consensus 184 qRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~ 263 (604)
|||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+ ..+|++++| ++|++++.|+.
T Consensus 147 qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d~v~~l-~~G~i~~~g~~ 223 (224)
T 2pcj_A 147 QRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE-LA-ELTHRTLEM-KDGKVVGEITR 223 (224)
T ss_dssp HHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HH-TTSSEEEEE-ETTEEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HH-HhCCEEEEE-ECCEEEEEeee
Confidence 9999999999999999999999999999999999999999877999999999975 44 889999999 89999998863
No 10
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.6e-47 Score=403.93 Aligned_cols=218 Identities=27% Similarity=0.485 Sum_probs=191.8
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--hc
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--EV 109 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--~~ 109 (604)
+++..|+++.+. +++.+|+|+|+++++||+++|+||||||||||||+|+|+++ |++|+|.++|+++.. ..
T Consensus 14 ~l~~~~l~~~y~---g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~~~~~~ 85 (355)
T 1z47_A 14 TIEFVGVEKIYP---GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER-----PTKGDVWIGGKRVTDLPPQ 85 (355)
T ss_dssp EEEEEEEEECCT---TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTTCCGG
T ss_pred eEEEEEEEEEEc---CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEECCEECCcCChh
Confidence 455556544321 45679999999999999999999999999999999999985 679999999999853 34
Q ss_pred cccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHH
Q 046786 110 KRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIG 189 (604)
Q Consensus 110 ~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia 189 (604)
++.+|||+|+..++|++||+||+.|+...+ ..++++.+++++++++.+||.+..+ +++++|||||||||+||
T Consensus 86 ~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~-----r~~~~LSGGq~QRvalA 157 (355)
T 1z47_A 86 KRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYAN-----RFPHELSGGQQQRVALA 157 (355)
T ss_dssp GSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTT-----SCGGGSCHHHHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhc-----CCcccCCHHHHHHHHHH
Confidence 678999999999999999999999987653 2455666778999999999998776 55679999999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 190 QELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 190 ~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
|||+.+|++|||||||||||+.++.++.+.|++++++ |+|||++|||+. ++..++|++++| ++|+++..|+++++.
T Consensus 158 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl-~~G~i~~~g~~~~l~ 234 (355)
T 1z47_A 158 RALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVL-HEGNVEQFGTPEEVY 234 (355)
T ss_dssp HHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEE-ETTEEEEEECHHHHH
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEE-ECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999999764 999999999975 678899999999 899999999998874
No 11
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.3e-47 Score=403.93 Aligned_cols=217 Identities=32% Similarity=0.520 Sum_probs=191.2
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--hcc
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--EVK 110 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--~~~ 110 (604)
++..|+++.+ +++.+|+|+|+++++||+++|+||||||||||||+|+|+++ |++|+|.++|+++.. ..+
T Consensus 4 l~~~~l~~~y----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~~~~~~~ 74 (362)
T 2it1_A 4 IKLENIVKKF----GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK-----PTSGKIYFDEKDVTELPPKD 74 (362)
T ss_dssp EEEEEEEEES----SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTTSCGGG
T ss_pred EEEEeEEEEE----CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC-----CCceEEEECCEECCcCCHhH
Confidence 4555654433 45679999999999999999999999999999999999985 679999999999853 345
Q ss_pred ccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHH
Q 046786 111 RRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQ 190 (604)
Q Consensus 111 ~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~ 190 (604)
+.+|||+|+..++|++||+||+.|+...+ ..++++.+++++++++.+||.+..+ +++++|||||||||+|||
T Consensus 75 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~-----r~~~~LSGGq~QRvalAr 146 (362)
T 2it1_A 75 RNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLN-----RYPWQLSGGQQQRVAIAR 146 (362)
T ss_dssp TTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTT-----CCGGGSCHHHHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhh-----CChhhCCHHHHHHHHHHH
Confidence 78999999999999999999999987653 2355666778999999999998776 556799999999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHHH
Q 046786 191 ELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVIN 268 (604)
Q Consensus 191 ~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~~ 268 (604)
||+.+|++|||||||||||+..+..+.+.|+++.++ |+|+|++|||+. ++..++|++++| ++|+++..|+++++.+
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl-~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 147 ALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVI-REGEILQVGTPDEVYY 223 (362)
T ss_dssp HHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEE-ETTEEEEEECHHHHHH
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEE-ECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999999764 999999999975 678899999999 8999999999998753
No 12
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=2e-47 Score=404.08 Aligned_cols=217 Identities=30% Similarity=0.511 Sum_probs=189.9
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--hcc
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--EVK 110 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--~~~ 110 (604)
++..|+++.+ +++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ |++|+|.++|+++.. ..+
T Consensus 4 l~~~~l~~~y----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~~~~~~~ 74 (359)
T 2yyz_A 4 IRVVNLKKYF----GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK-----PTSGEIYFDDVLVNDIPPKY 74 (359)
T ss_dssp EEEEEEEEEE----TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTTSCGGG
T ss_pred EEEEEEEEEE----CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC-----CCccEEEECCEECCCCChhh
Confidence 5555665544 34679999999999999999999999999999999999985 679999999999853 345
Q ss_pred ccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHH
Q 046786 111 RRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQ 190 (604)
Q Consensus 111 ~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~ 190 (604)
+.+|||+|+..++|++||+||+.|+.+.+ ..++++.+++++++++.+||.+..+ +++++|||||||||+|||
T Consensus 75 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~-----r~~~~LSgGq~QRvalAr 146 (359)
T 2yyz_A 75 REVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLD-----RKPTQLSGGQQQRVALAR 146 (359)
T ss_dssp TTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTT-----SCGGGSCHHHHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhc-----CChhhCCHHHHHHHHHHH
Confidence 78999999999999999999999975432 2334455678999999999988776 556799999999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHHH
Q 046786 191 ELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVIN 268 (604)
Q Consensus 191 ~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~~ 268 (604)
||+.+|++|||||||||||+..+..+.+.|+++.++ |+|+|++|||+. ++..++|++++| ++|+++..|+++++.+
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl-~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 147 ALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVF-NQGKLVQYGTPDEVYD 223 (359)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEE-ETTEEEEEECHHHHHH
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEE-ECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999999999764 999999999975 678899999999 8999999999998753
No 13
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=5.7e-47 Score=402.91 Aligned_cols=217 Identities=30% Similarity=0.525 Sum_probs=191.1
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-----
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----- 107 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----- 107 (604)
++..|+++.+ +++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ |++|+|.++|+++..
T Consensus 4 l~~~~l~~~y----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~~~~~~~~~ 74 (372)
T 1g29_1 4 VRLVDVWKVF----GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE-----PSRGQIYIGDKLVADPEKGI 74 (372)
T ss_dssp EEEEEEEEEE----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEEEEGGGTE
T ss_pred EEEEeEEEEE----CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC-----CCccEEEECCEECccccccc
Confidence 4555665544 34679999999999999999999999999999999999985 679999999998632
Q ss_pred ---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHH
Q 046786 108 ---EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERK 184 (604)
Q Consensus 108 ---~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 184 (604)
..++.+|||+|+..++|++||+||+.|+...+ ..++++.+++++++++.+||.+..+ +++++|||||||
T Consensus 75 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~-----r~~~~LSGGq~Q 146 (372)
T 1g29_1 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLN-----RKPRELSGGQRQ 146 (372)
T ss_dssp ECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTT-----CCGGGSCHHHHH
T ss_pred cCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhc-----CCcccCCHHHHH
Confidence 23568999999999999999999999987654 2455666778999999999998776 556799999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecCh
Q 046786 185 RISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKG 263 (604)
Q Consensus 185 Rvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~ 263 (604)
||+|||||+.+|++|||||||||||+..+..+.+.|+++.++ |+|+|++|||+. ++..++|++++| ++|+++..|++
T Consensus 147 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl-~~G~i~~~g~~ 224 (372)
T 1g29_1 147 RVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVM-NRGVLQQVGSP 224 (372)
T ss_dssp HHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEE-ETTEEEEEECH
T ss_pred HHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEE-eCCEEEEeCCH
Confidence 999999999999999999999999999999999999999764 999999999975 678899999999 89999999999
Q ss_pred hhHHH
Q 046786 264 EDVIN 268 (604)
Q Consensus 264 ~~~~~ 268 (604)
+++.+
T Consensus 225 ~~l~~ 229 (372)
T 1g29_1 225 DEVYD 229 (372)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98753
No 14
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.7e-47 Score=388.54 Aligned_cols=218 Identities=27% Similarity=0.431 Sum_probs=186.7
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+++.+ +++++|+|||+++++||+++|+||||||||||||+|+|+++ |++|+|.++|+++..
T Consensus 7 ~l~i~~l~~~y----~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~~~~~ 77 (257)
T 1g6h_A 7 ILRTENIVKYF----GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK-----ADEGRVYFENKDITNKEPA 77 (257)
T ss_dssp EEEEEEEEEEE----TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTTCCHH
T ss_pred EEEEeeeEEEE----CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCCCCHH
Confidence 46666766554 34579999999999999999999999999999999999985 679999999998743
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHh-cCCC---------CCCHHHHHHHHHHHHHHcCCCccccccccCccCC
Q 046786 108 -EVKRRTGFVAQNNVFYPHLTVAETLVFTALL-RLPN---------SLKREEKVLHAEAVINQLGLARCRNSIIGGRLVR 176 (604)
Q Consensus 108 -~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~-~~~~---------~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 176 (604)
..++.+|||+|++.+++.+||+||+.++... .... ...+++..++++++++.+||.+..+ +.++
T Consensus 78 ~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~ 152 (257)
T 1g6h_A 78 ELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYD-----RKAG 152 (257)
T ss_dssp HHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTT-----SBGG
T ss_pred HHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhC-----CCch
Confidence 2356799999999999999999999986432 1110 0122344567899999999988776 4466
Q ss_pred CcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCe
Q 046786 177 GLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGS 256 (604)
Q Consensus 177 ~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~ 256 (604)
+|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||++. .+..++|++++| ++|+
T Consensus 153 ~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l-~~G~ 230 (257)
T 1g6h_A 153 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVM-FNGQ 230 (257)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEE-ETTE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEE-ECCE
Confidence 99999999999999999999999999999999999999999999999878999999999986 567899999999 8999
Q ss_pred EEEecChhh
Q 046786 257 SLYFGKGED 265 (604)
Q Consensus 257 ~v~~G~~~~ 265 (604)
+++.|++++
T Consensus 231 i~~~g~~~~ 239 (257)
T 1g6h_A 231 IIAEGRGEE 239 (257)
T ss_dssp EEEEEESHH
T ss_pred EEEEeCHHH
Confidence 999999887
No 15
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=2.7e-47 Score=388.76 Aligned_cols=215 Identities=27% Similarity=0.412 Sum_probs=187.0
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+++.+ +++.+|+|||+++++||+++|+||||||||||||+|+|+++ |++|+|.++|+++..
T Consensus 11 ~l~~~~l~~~~----~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~~~~~~~ 81 (266)
T 4g1u_C 11 LLEASHLHYHV----QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS-----PSHGECHLLGQNLNSWQPK 81 (266)
T ss_dssp EEEEEEEEEEE----TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC-----CSSCEEEETTEETTTSCHH
T ss_pred eEEEEeEEEEe----CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEECCcCCHH
Confidence 46667766554 45679999999999999999999999999999999999985 679999999999853
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHH
Q 046786 108 EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRIS 187 (604)
Q Consensus 108 ~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvs 187 (604)
..++.++|++|++.+++.+||+||+.++.... ...+.+++++++++.+||.+..+ +.+++|||||||||+
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgGq~QRv~ 151 (266)
T 4g1u_C 82 ALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQ-----RDYRVLSGGEQQRVQ 151 (266)
T ss_dssp HHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTT-----SBGGGCCHHHHHHHH
T ss_pred HHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhc-----CCcccCCHHHHHHHH
Confidence 34567999999999888899999999875432 12233457899999999998777 445699999999999
Q ss_pred HHHHHhh------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEe
Q 046786 188 IGQELLI------NPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYF 260 (604)
Q Consensus 188 ia~~L~~------~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~ 260 (604)
|||||+. +|++|||||||+|||+.++..+++.|++++++ |+|||++||++. .+..++|++++| ++|++++.
T Consensus 152 iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl-~~G~i~~~ 229 (266)
T 4g1u_C 152 LARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLL-AQGKLVAC 229 (266)
T ss_dssp HHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEE-ETTEEEEE
T ss_pred HHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEE-ECCEEEEE
Confidence 9999999 99999999999999999999999999999865 679999999975 677899999999 89999999
Q ss_pred cChhhHH
Q 046786 261 GKGEDVI 267 (604)
Q Consensus 261 G~~~~~~ 267 (604)
|+++++.
T Consensus 230 g~~~~~~ 236 (266)
T 4g1u_C 230 GTPEEVL 236 (266)
T ss_dssp ECHHHHC
T ss_pred cCHHHHh
Confidence 9998763
No 16
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=2.9e-47 Score=402.70 Aligned_cols=217 Identities=29% Similarity=0.491 Sum_probs=190.4
Q ss_pred hheeeeEEEEEeccccccc--eeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--
Q 046786 32 MLKKVNMLVIIKNSDEEKM--ILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~--iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-- 107 (604)
+++..|+++.+ ++++ +|+|+|+++++||+++|+||||||||||||+|+|+.+ |++|+|.++|+++..
T Consensus 3 ~l~i~~l~~~y----~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~~~~ 73 (353)
T 1oxx_K 3 RIIVKNVSKVF----KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV-----PSTGELYFDDRLVASNG 73 (353)
T ss_dssp CEEEEEEEEEE----GGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC-----CSEEEEEETTEEEEETT
T ss_pred EEEEEeEEEEE----CCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECcccc
Confidence 35555665544 3456 9999999999999999999999999999999999985 679999999998732
Q ss_pred -----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHH
Q 046786 108 -----EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGE 182 (604)
Q Consensus 108 -----~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 182 (604)
..++.+|||+|+..++|++||+||+.|+...+ ..++++.+++++++++.+||.+..+ +++++|||||
T Consensus 74 ~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~-----~~~~~LSGGq 145 (353)
T 1oxx_K 74 KLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLN-----HFPRELSGAQ 145 (353)
T ss_dssp EESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTT-----SCGGGSCHHH
T ss_pred cccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhc-----CChhhCCHHH
Confidence 34678999999999999999999999976432 3456666778999999999998776 5567999999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 183 RKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 183 rqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
||||+|||||+.+|++|||||||+|||+..+.++.+.|++++++ |+|+|++|||+. ++..++|++++| ++|+++..|
T Consensus 146 ~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl-~~G~i~~~g 223 (353)
T 1oxx_K 146 QQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVL-VKGKLVQVG 223 (353)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEE-ETTEEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE-ECCEEEEEc
Confidence 99999999999999999999999999999999999999999764 999999999975 678899999999 899999999
Q ss_pred ChhhHH
Q 046786 262 KGEDVI 267 (604)
Q Consensus 262 ~~~~~~ 267 (604)
+++++.
T Consensus 224 ~~~~l~ 229 (353)
T 1oxx_K 224 KPEDLY 229 (353)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 998875
No 17
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=4.4e-47 Score=403.24 Aligned_cols=216 Identities=26% Similarity=0.465 Sum_probs=184.5
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--hcc
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--EVK 110 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--~~~ 110 (604)
++..|+++.+ +++.+|+|+|+++++||+++|+||||||||||||+|+|+++ |++|+|.++|+++.. ..+
T Consensus 12 l~~~~l~~~y----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~~~~~~~ 82 (372)
T 1v43_A 12 VKLENLTKRF----GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE-----PTEGRIYFGDRDVTYLPPKD 82 (372)
T ss_dssp EEEEEEEEEE----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTTSCGGG
T ss_pred EEEEEEEEEE----CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC-----CCceEEEECCEECCCCChhh
Confidence 5666665544 34679999999999999999999999999999999999985 679999999999853 345
Q ss_pred ccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHH
Q 046786 111 RRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQ 190 (604)
Q Consensus 111 ~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~ 190 (604)
+.+|||+|+..++|++||+||+.|+...+ ..++++.+++++++++.+||.+..+ +++++|||||||||+|||
T Consensus 83 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~-----r~~~~LSGGq~QRvalAr 154 (372)
T 1v43_A 83 RNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLN-----RYPAQLSGGQRQRVAVAR 154 (372)
T ss_dssp GTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTT-----SCTTTCCSSCHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhc-----CChhhCCHHHHHHHHHHH
Confidence 78999999999999999999999875332 2456666778999999999998776 567799999999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 191 ELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 191 ~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
||+.+|++|||||||||||+..+..+.+.|+++.++ |+|+|++|||+. ++..++|++++| ++|+++..|+++++.
T Consensus 155 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl-~~G~i~~~g~~~~l~ 230 (372)
T 1v43_A 155 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVM-NRGQLLQIGSPTEVY 230 (372)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEE-ETTEEEEEECHHHHH
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-ECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999765 999999999975 678899999999 899999999999875
No 18
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=5.4e-47 Score=381.10 Aligned_cols=216 Identities=26% Similarity=0.461 Sum_probs=184.4
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+++.+ +++.+|+|+|+++++||+++|+||||||||||||+|+|+++ |++|+|.++|+++..
T Consensus 6 ~l~~~~l~~~y----~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~~~ 76 (240)
T 1ji0_A 6 VLEVQSLHVYY----GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR-----AQKGKIIFNGQDITNKPAH 76 (240)
T ss_dssp EEEEEEEEEEE----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTTCCHH
T ss_pred eEEEEeEEEEE----CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCCCCHH
Confidence 45666666554 33679999999999999999999999999999999999985 679999999999843
Q ss_pred h-ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCccCCCcCHHHHHH
Q 046786 108 E-VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLG-LARCRNSIIGGRLVRGLSGGERKR 185 (604)
Q Consensus 108 ~-~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~~LSgGerqR 185 (604)
. .++.+|||+|++.+++.+||+||+.++.... ...++..++++++++.++ |.+..+ +.+.+||||||||
T Consensus 77 ~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~-----~~~~~LSgGq~qr 147 (240)
T 1ji0_A 77 VINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLK-----QLGGTLSGGEQQM 147 (240)
T ss_dssp HHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTT-----SBSSSSCHHHHHH
T ss_pred HHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhc-----CChhhCCHHHHHH
Confidence 1 2456999999999999999999999864211 122234456788999995 877666 4567999999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhh
Q 046786 186 ISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGED 265 (604)
Q Consensus 186 vsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~ 265 (604)
|+||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||++. .+..++|++++| ++|++++.|++++
T Consensus 148 v~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l-~~G~i~~~g~~~~ 225 (240)
T 1ji0_A 148 LAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVL-ETGQIVLEGKASE 225 (240)
T ss_dssp HHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEE-ETTEEEEEEEHHH
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEE-ECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999999878999999999975 577899999999 8999999999887
Q ss_pred HH
Q 046786 266 VI 267 (604)
Q Consensus 266 ~~ 267 (604)
+.
T Consensus 226 ~~ 227 (240)
T 1ji0_A 226 LL 227 (240)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 19
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.1e-46 Score=397.09 Aligned_cols=212 Identities=29% Similarity=0.450 Sum_probs=185.4
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--hcc
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--EVK 110 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--~~~ 110 (604)
++..|+++.+ +++ +|+|+|+++++||+++|+||||||||||||+|+|+.+ |++|+|.++|+++.. ..+
T Consensus 2 l~~~~l~~~y----~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~~~g~~i~~~~~~~ 71 (348)
T 3d31_A 2 IEIESLSRKW----KNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV-----PDSGRILLDGKDVTDLSPEK 71 (348)
T ss_dssp EEEEEEEEEC----SSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC-----CSEEEEEETTEECTTSCHHH
T ss_pred EEEEEEEEEE----CCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC-----CCCcEEEECCEECCCCchhh
Confidence 3444554433 345 9999999999999999999999999999999999985 679999999999853 346
Q ss_pred ccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHH
Q 046786 111 RRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQ 190 (604)
Q Consensus 111 ~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~ 190 (604)
+.+|||+|+..++|++||+||+.|+...+. .+++ ++++++++.+||.+..| +++++|||||||||+|||
T Consensus 72 r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~---~~~~---~~v~~~l~~~~L~~~~~-----~~~~~LSgGq~QRvalAr 140 (348)
T 3d31_A 72 HDIAFVYQNYSLFPHMNVKKNLEFGMRMKK---IKDP---KRVLDTARDLKIEHLLD-----RNPLTLSGGEQQRVALAR 140 (348)
T ss_dssp HTCEEECTTCCCCTTSCHHHHHHHHHHHHC---CCCH---HHHHHHHHHTTCTTTTT-----SCGGGSCHHHHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHHcC---CCHH---HHHHHHHHHcCCchHhc-----CChhhCCHHHHHHHHHHH
Confidence 789999999999999999999999876531 1112 57899999999998777 556799999999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 191 ELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 191 ~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
||+.+|++|+|||||+|||+..+..+.+.|+++++ .|+|+|++|||+. ++..++|++++| ++|+++..|+++++.
T Consensus 141 aL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl-~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 141 ALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVV-MDGKLIQVGKPEEIF 216 (348)
T ss_dssp HTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEE-SSSCEEEEECHHHHH
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE-ECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999976 5999999999975 678899999999 899999999998874
No 20
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1.4e-46 Score=377.85 Aligned_cols=211 Identities=26% Similarity=0.442 Sum_probs=181.7
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--hcc
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--EVK 110 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--~~~ 110 (604)
++..|+++.+. + +|+|+|+++++ |+++|+||||||||||||+|+|+++ |++|+|.++|+++.. ..+
T Consensus 2 l~~~~l~~~y~----~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~~~~ 69 (240)
T 2onk_A 2 FLKVRAEKRLG----N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK-----PDRGEVRLNGADITPLPPER 69 (240)
T ss_dssp CEEEEEEEEET----T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTTSCTTT
T ss_pred EEEEEEEEEeC----C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCcCchhh
Confidence 44556655442 2 59999999999 9999999999999999999999985 679999999998853 345
Q ss_pred ccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHH
Q 046786 111 RRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQ 190 (604)
Q Consensus 111 ~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~ 190 (604)
+.+|||+|++.+++.+||+||+.++...+ .....+++++++++.+||.+..+ +++.+|||||||||+||+
T Consensus 70 ~~i~~v~q~~~l~~~ltv~enl~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgGqkqRv~lAr 139 (240)
T 2onk_A 70 RGIGFVPQDYALFPHLSVYRNIAYGLRNV-----ERVERDRRVREMAEKLGIAHLLD-----RKPARLSGGERQRVALAR 139 (240)
T ss_dssp SCCBCCCSSCCCCTTSCHHHHHHTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTT-----CCGGGSCHHHHHHHHHHH
T ss_pred CcEEEEcCCCccCCCCcHHHHHHHHHHHc-----CCchHHHHHHHHHHHcCCHHHhc-----CChhhCCHHHHHHHHHHH
Confidence 68999999999999999999998864221 12223567899999999988776 446699999999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 191 ELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 191 ~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
+|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||++. .+..++|++++| ++|++++.|+++++.
T Consensus 140 al~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l-~~G~i~~~g~~~~~~ 215 (240)
T 2onk_A 140 ALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVM-LNGRIVEKGKLKELF 215 (240)
T ss_dssp HHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEE-ETTEEEEEECHHHHH
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE-ECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999764 999999999975 577899999999 899999999988764
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=3.4e-46 Score=380.82 Aligned_cols=220 Identities=26% Similarity=0.444 Sum_probs=185.0
Q ss_pred heeeeEEEEEeccc-cccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-hcc
Q 046786 33 LKKVNMLVIIKNSD-EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-EVK 110 (604)
Q Consensus 33 ~~~~~~~~~~~~~~-~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-~~~ 110 (604)
++..|+++.+.... ..+.+|+|+|+++++||+++|+||||||||||||+|+|+++ |++|+|.++|+++.. ..+
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~~~~~~~~~ 77 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE-----PTSGDVLYDGERKKGYEIR 77 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECCHHHHG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEECCEECchHHhh
Confidence 55566666553111 01579999999999999999999999999999999999985 679999999998864 456
Q ss_pred ccEEEEecCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCccCCCcCHHHHHHHH
Q 046786 111 RRTGFVAQNN-VFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLA--RCRNSIIGGRLVRGLSGGERKRIS 187 (604)
Q Consensus 111 ~~i~yv~Q~~-~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~vg~~~~~~LSgGerqRvs 187 (604)
+.+|||+|++ ..++.+||+||+.++.... .+.++..++++++++.+||. +..+ +.+++|||||||||+
T Consensus 78 ~~i~~v~q~~~~~~~~~tv~enl~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~~~LSgGq~qRv~ 148 (266)
T 2yz2_A 78 RNIGIAFQYPEDQFFAERVFDEVAFAVKNF----YPDRDPVPLVKKAMEFVGLDFDSFKD-----RVPFFLSGGEKRRVA 148 (266)
T ss_dssp GGEEEECSSGGGGCCCSSHHHHHHHTTTTT----CTTSCSHHHHHHHHHHTTCCHHHHTT-----CCGGGSCHHHHHHHH
T ss_pred hhEEEEeccchhhcCCCcHHHHHHHHHHhc----CCHHHHHHHHHHHHHHcCcCCccccc-----CChhhCCHHHHHHHH
Confidence 7899999995 4667799999999864321 11122235688999999998 7766 446699999999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 188 IGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 188 ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||++. .+..++|++++| ++|++++.|+++++.
T Consensus 149 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l-~~G~i~~~g~~~~~~ 226 (266)
T 2yz2_A 149 IASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVL-EKGKKVFDGTRMEFL 226 (266)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEE-ETTEEEEEEEHHHHH
T ss_pred HHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-ECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999877999999999986 466789999999 899999999988876
Q ss_pred H
Q 046786 268 N 268 (604)
Q Consensus 268 ~ 268 (604)
+
T Consensus 227 ~ 227 (266)
T 2yz2_A 227 E 227 (266)
T ss_dssp H
T ss_pred c
Confidence 4
No 22
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=7.1e-46 Score=375.18 Aligned_cols=220 Identities=28% Similarity=0.371 Sum_probs=177.4
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+++.+ +++.+|+|+|+++++||+++|+||||||||||||+|+|+.. ..|++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~y----~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~---~~p~~G~I~~~g~~~~~~~~~ 75 (250)
T 2d2e_A 3 QLEIRDLWASI----DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPE---YTVERGEILLDGENILELSPD 75 (250)
T ss_dssp EEEEEEEEEEE----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTT---CEEEEEEEEETTEECTTSCHH
T ss_pred eEEEEeEEEEE----CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCceEEEECCEECCCCCHH
Confidence 35666666554 34679999999999999999999999999999999999821 03679999999998743
Q ss_pred h-ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-CccccccccCccCCC-cCHHHHH
Q 046786 108 E-VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGL-ARCRNSIIGGRLVRG-LSGGERK 184 (604)
Q Consensus 108 ~-~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL-~~~~~~~vg~~~~~~-LSgGerq 184 (604)
. .++.++||+|++.+++.+||+||+.+............++..++++++++.+|| .+..++ .+.+ |||||||
T Consensus 76 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~~~LSgGqkQ 150 (250)
T 2d2e_A 76 ERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSR-----YLNEGFSGGEKK 150 (250)
T ss_dssp HHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGS-----BTTCC----HHH
T ss_pred HHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcC-----CcccCCCHHHHH
Confidence 1 234699999999999999999999986532111112334445678999999999 466664 4557 9999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhh-cCeEEEEecCCeEEEecCh
Q 046786 185 RISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYM-FNKILLLSSDGSSLYFGKG 263 (604)
Q Consensus 185 Rvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~-~d~v~ll~~~G~~v~~G~~ 263 (604)
||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||++. .+... +|++++| ++|++++.|++
T Consensus 151 rv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l-~~G~i~~~g~~ 228 (250)
T 2d2e_A 151 RNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVM-MDGRVVATGGP 228 (250)
T ss_dssp HHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEE-ETTEEEEEESH
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEE-ECCEEEEEeCH
Confidence 999999999999999999999999999999999999999777999999999986 45566 5999999 89999999998
Q ss_pred hh
Q 046786 264 ED 265 (604)
Q Consensus 264 ~~ 265 (604)
+.
T Consensus 229 ~~ 230 (250)
T 2d2e_A 229 EL 230 (250)
T ss_dssp HH
T ss_pred HH
Confidence 73
No 23
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=5.4e-46 Score=381.57 Aligned_cols=220 Identities=28% Similarity=0.395 Sum_probs=182.5
Q ss_pred hhheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCC--h-
Q 046786 31 DMLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS--A- 107 (604)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~--~- 107 (604)
.+++..|+++.+ +++.+|+|||+++++||+++|+||||||||||||+|+|+++ |++|+|.++|+++. .
T Consensus 20 ~~l~~~~l~~~y----~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~~~~~~~ 90 (279)
T 2ihy_A 20 MLIQLDQIGRMK----QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP-----ATSGTVNLFGKMPGKVGY 90 (279)
T ss_dssp EEEEEEEEEEEE----TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTBCCC---C
T ss_pred ceEEEEeEEEEE----CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCeEEEECCEEcccccC
Confidence 356777776654 34579999999999999999999999999999999999985 67999999998875 2
Q ss_pred ---hccccEEEEecCCCC--CCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHH
Q 046786 108 ---EVKRRTGFVAQNNVF--YPHLTVAETLVFTALLRLP-NSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGG 181 (604)
Q Consensus 108 ---~~~~~i~yv~Q~~~l--~~~lTv~e~l~f~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 181 (604)
..++.+|||+|++.+ .+.+||+||+.++...... .....++..++++++++.+||.+..+ +.+.+||||
T Consensus 91 ~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LSgG 165 (279)
T 2ihy_A 91 SAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQ-----QYIGYLSTG 165 (279)
T ss_dssp CHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTT-----SBGGGSCHH
T ss_pred CHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhc-----CChhhCCHH
Confidence 356789999998754 3457999999875321100 01112334567899999999988776 445699999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE--EEEecCCchHHHhhcCeEEEEecCCeEEE
Q 046786 182 ERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTI--LMTIHQPASSLFYMFNKILLLSSDGSSLY 259 (604)
Q Consensus 182 erqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tv--i~~~Hq~~~~i~~~~d~v~ll~~~G~~v~ 259 (604)
|||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|| |++||++. .+..++|++++| ++|++++
T Consensus 166 qkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l-~~G~i~~ 243 (279)
T 2ihy_A 166 EKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLL-KDGQSIQ 243 (279)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEE-ETTEEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEE-ECCEEEE
Confidence 9999999999999999999999999999999999999999998779999 99999975 567889999999 8999999
Q ss_pred ecChhhH
Q 046786 260 FGKGEDV 266 (604)
Q Consensus 260 ~G~~~~~ 266 (604)
.|+++++
T Consensus 244 ~g~~~~~ 250 (279)
T 2ihy_A 244 QGAVEDI 250 (279)
T ss_dssp EEEHHHH
T ss_pred ECCHHHH
Confidence 9988765
No 24
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=9.9e-45 Score=370.15 Aligned_cols=230 Identities=32% Similarity=0.415 Sum_probs=188.4
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+++.+ +++.+|+|||+++++||+++|+||||||||||||+|+|+.+. .|++|+|.++|+++..
T Consensus 20 ~l~~~~l~~~y----~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~---~p~~G~I~~~g~~i~~~~~~ 92 (267)
T 2zu0_C 20 MLSIKDLHVSV----EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDY---EVTGGTVEFKGKDLLALSPE 92 (267)
T ss_dssp CEEEEEEEEEE----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTC---EEEEEEEEETTEEGGGSCHH
T ss_pred eEEEEeEEEEE----CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCCCeEEEECCEECCcCCHH
Confidence 56777776655 346799999999999999999999999999999999998421 3679999999998742
Q ss_pred hc-cccEEEEecCCCCCCCCCHHHHHHHHHH-hc---CCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCC-CcCH
Q 046786 108 EV-KRRTGFVAQNNVFYPHLTVAETLVFTAL-LR---LPNSLKREEKVLHAEAVINQLGLA-RCRNSIIGGRLVR-GLSG 180 (604)
Q Consensus 108 ~~-~~~i~yv~Q~~~l~~~lTv~e~l~f~~~-~~---~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~-~LSg 180 (604)
.. ++.++||+|++.+++.+||.|++.+... .+ .....+.++..++++++++.+||. +..+ +.+. +|||
T Consensus 93 ~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~~~LSg 167 (267)
T 2zu0_C 93 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLT-----RSVNVGFSG 167 (267)
T ss_dssp HHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTT-----SBTTTTCCH
T ss_pred HHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhc-----CCcccCCCH
Confidence 12 3459999999999999999999987542 11 111234445556789999999996 4555 4454 5999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhh-cCeEEEEecCCeEEE
Q 046786 181 GERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYM-FNKILLLSSDGSSLY 259 (604)
Q Consensus 181 GerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~-~d~v~ll~~~G~~v~ 259 (604)
||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. .+... +|++++| ++|++++
T Consensus 168 Gq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~~d~v~~l-~~G~i~~ 245 (267)
T 2zu0_C 168 GEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVL-YQGRIVK 245 (267)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG-GGGTSCCSEEEEE-ETTEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH-HHHhhcCCEEEEE-ECCEEEE
Confidence 9999999999999999999999999999999999999999999877999999999985 45555 8999999 8999999
Q ss_pred ecChhhHHHHHHhCCCC
Q 046786 260 FGKGEDVINYFAGIGYV 276 (604)
Q Consensus 260 ~G~~~~~~~~f~~~g~~ 276 (604)
.|+++++.. .+..|+.
T Consensus 246 ~g~~~~~~~-~~~~~~~ 261 (267)
T 2zu0_C 246 SGDFTLVKQ-LEEQGYG 261 (267)
T ss_dssp EECTTHHHH-HHTTTCT
T ss_pred EcCHHHHhh-hhhcchh
Confidence 999988754 4555443
No 25
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=2.1e-45 Score=371.11 Aligned_cols=196 Identities=29% Similarity=0.413 Sum_probs=174.4
Q ss_pred ceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----hccccEEEEecCCCCCCC
Q 046786 50 MILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----EVKRRTGFVAQNNVFYPH 125 (604)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~~ 125 (604)
.+|+|+|+++++||+++|+||||||||||||+|+|+++ |+ |+|.++|+++.. ..++.+|||+|++.+++.
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~-----p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~ 87 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-----GK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFA 87 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTT
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCC
Confidence 58999999999999999999999999999999999985 67 999999998742 356679999999999999
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCC-------e
Q 046786 126 LTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPS-------L 198 (604)
Q Consensus 126 lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~-------i 198 (604)
+||+||+.++.. +. .. .++++++++.+||.+..+ +.+.+|||||||||+||++|+.+|+ +
T Consensus 88 ~tv~e~l~~~~~---~~-~~----~~~~~~~l~~~~l~~~~~-----~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~l 154 (249)
T 2qi9_C 88 TPVWHYLTLHQH---DK-TR----TELLNDVAGALALDDKLG-----RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQL 154 (249)
T ss_dssp CBHHHHHHTTCS---ST-TC----HHHHHHHHHHTTCGGGTT-----SBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCE
T ss_pred CcHHHHHHHhhc---cC-Cc----HHHHHHHHHHcCChhHhc-----CChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeE
Confidence 999999987521 11 12 356889999999988776 4466999999999999999999999 9
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhH
Q 046786 199 LFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266 (604)
Q Consensus 199 llLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~ 266 (604)
|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+..++|++++| ++|++++.|+++++
T Consensus 155 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l-~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 155 LLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLL-KGGKMLASGRREEV 220 (249)
T ss_dssp EEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEE-ETTEEEEEEEHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-ECCEEEEeCCHHHH
Confidence 9999999999999999999999999877999999999975 567899999999 89999999988766
No 26
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.1e-44 Score=366.86 Aligned_cols=210 Identities=30% Similarity=0.430 Sum_probs=177.9
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccc
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKR 111 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~ 111 (604)
+++..|+++.+. +++.+|+|+|+++++||+++|+||||||||||||+|+|+++ |++|+|. .++
T Consensus 4 ~l~i~~l~~~y~---~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~---------~~~ 66 (253)
T 2nq2_C 4 ALSVENLGFYYQ---AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR-----PIQGKIE---------VYQ 66 (253)
T ss_dssp EEEEEEEEEEET---TTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC-----CSEEEEE---------ECS
T ss_pred eEEEeeEEEEeC---CCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEE---------Eec
Confidence 456666665542 14679999999999999999999999999999999999985 5799998 356
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHH
Q 046786 112 RTGFVAQNNVFYPHLTVAETLVFTALLRLPN-SLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQ 190 (604)
Q Consensus 112 ~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~ 190 (604)
.+|||+|++.+++.+||+||+.++....... .....+..++++++++.+||.+..+ +.+.+|||||||||+||+
T Consensus 67 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgGq~qrv~lAr 141 (253)
T 2nq2_C 67 SIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAK-----REFTSLSGGQRQLILIAR 141 (253)
T ss_dssp CEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTT-----SBGGGSCHHHHHHHHHHH
T ss_pred cEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhc-----CChhhCCHHHHHHHHHHH
Confidence 7999999999998999999999864321110 0112334567899999999988776 446699999999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhH
Q 046786 191 ELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266 (604)
Q Consensus 191 ~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~ 266 (604)
+|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||++. .+..++|++++| ++|+ ++.|+++++
T Consensus 142 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l-~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 142 AIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLL-NKQN-FKFGETRNI 215 (253)
T ss_dssp HHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEE-ETTE-EEEEEHHHH
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEE-eCCe-EecCCHHHH
Confidence 999999999999999999999999999999999876 999999999975 577899999999 8999 999988765
No 27
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=3e-45 Score=374.71 Aligned_cols=218 Identities=23% Similarity=0.363 Sum_probs=177.7
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+++.+... +++.+|+|||+++++||+++|+||||||||||||+|+|+++ |++|+|.++|+++..
T Consensus 16 ~l~~~~l~~~y~~~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~i~~~~~~ 89 (271)
T 2ixe_A 16 LVKFQDVSFAYPNH-PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ-----PTGGKVLLDGEPLVQYDHH 89 (271)
T ss_dssp CEEEEEEEECCTTC-TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEEGGGBCHH
T ss_pred eEEEEEEEEEeCCC-CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCCEEEECCEEcccCCHH
Confidence 46666765543210 12679999999999999999999999999999999999985 679999999998742
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCC-HH----HHHHHHHHHHHHc--CCCccccccccCccCCCcCH
Q 046786 108 EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLK-RE----EKVLHAEAVINQL--GLARCRNSIIGGRLVRGLSG 180 (604)
Q Consensus 108 ~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~-~~----~~~~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSg 180 (604)
.+++.+|||+|++.+++ .||+||+.++... ... .+ .....++++++.+ |+.+..+ +.+.+|||
T Consensus 90 ~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~----~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~-----~~~~~LSg 159 (271)
T 2ixe_A 90 YLHTQVAAVGQEPLLFG-RSFRENIAYGLTR----TPTMEEITAVAMESGAHDFISGFPQGYDTEVG-----ETGNQLSG 159 (271)
T ss_dssp HHHHHEEEECSSCCCCS-SBHHHHHHTTCSS----CCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCC-----GGGTTSCH
T ss_pred HHhccEEEEecCCcccc-ccHHHHHhhhccc----CChHHHHHHHHHHHhHHHHHHhhhcchhhhhc-----CCcCCCCH
Confidence 34567999999998887 5999999875321 111 11 1122356778887 6765554 45679999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecCCeEEE
Q 046786 181 GERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSDGSSLY 259 (604)
Q Consensus 181 GerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~ 259 (604)
||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ +|+|||++||++. .+ ..+|++++| ++|+++.
T Consensus 160 Gq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~-~~-~~~d~v~~l-~~G~i~~ 236 (271)
T 2ixe_A 160 GQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS-LA-ERAHHILFL-KEGSVCE 236 (271)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH-HH-TTCSEEEEE-ETTEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HH-HhCCEEEEE-ECCEEEE
Confidence 999999999999999999999999999999999999999999975 5999999999975 34 459999999 8999999
Q ss_pred ecChhhHHH
Q 046786 260 FGKGEDVIN 268 (604)
Q Consensus 260 ~G~~~~~~~ 268 (604)
.|+++++.+
T Consensus 237 ~g~~~~l~~ 245 (271)
T 2ixe_A 237 QGTHLQLME 245 (271)
T ss_dssp EECHHHHHH
T ss_pred ECCHHHHHh
Confidence 999887753
No 28
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=2.1e-44 Score=373.63 Aligned_cols=213 Identities=29% Similarity=0.484 Sum_probs=176.9
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~ 108 (604)
++..|+++.+. +.+.+|+|||++|++||++||+||||||||||+|+|+|+++ |++|+|.++|+++.. .
T Consensus 54 i~~~~vs~~y~---~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~-----p~~G~I~i~G~~i~~~~~~~ 125 (306)
T 3nh6_A 54 IEFENVHFSYA---DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD-----ISSGCIRIDGQDISQVTQAS 125 (306)
T ss_dssp EEEEEEEEESS---TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC-----CSEEEEEETTEETTSBCHHH
T ss_pred EEEEEEEEEcC---CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC-----CCCcEEEECCEEcccCCHHH
Confidence 45556555432 34679999999999999999999999999999999999985 679999999999853 4
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccCCCcCHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLAR-------CRNSIIGGRLVRGLSGG 181 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgG 181 (604)
+++.+|||+|++.+|+ .||+||+.++... ... +.+++.++..++.+ -.+|.+| +....||||
T Consensus 126 ~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~-----~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~-~~g~~LSGG 194 (306)
T 3nh6_A 126 LRSHIGVVPQDTVLFN-DTIADNIRYGRVT-----AGN----DEVEAAAQAAGIHDAIMAFPEGYRTQVG-ERGLKLSGG 194 (306)
T ss_dssp HHHTEEEECSSCCCCS-EEHHHHHHTTSTT-----CCH----HHHHHHHHHHTCHHHHHHSTTGGGCEES-TTSBCCCHH
T ss_pred HhcceEEEecCCccCc-ccHHHHHHhhccc-----CCH----HHHHHHHHHhCcHHHHHhccchhhhHhc-CCcCCCCHH
Confidence 6788999999999986 5999999876321 122 23444555555543 3466666 567799999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 182 ERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 182 erqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
|||||+|||||+.+|+||||||||||||+.++..+++.|+++.+ ++|+|+++|+++ .+. .+|++++| ++|+++..|
T Consensus 195 qrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~-~~~-~aD~i~vl-~~G~iv~~G 270 (306)
T 3nh6_A 195 EKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLS-TVV-NADQILVI-KDGCIVERG 270 (306)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHH-HHH-TCSEEEEE-ETTEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChH-HHH-cCCEEEEE-ECCEEEEEC
Confidence 99999999999999999999999999999999999999999875 799999999986 454 49999999 899999999
Q ss_pred ChhhHHH
Q 046786 262 KGEDVIN 268 (604)
Q Consensus 262 ~~~~~~~ 268 (604)
+++++..
T Consensus 271 ~~~el~~ 277 (306)
T 3nh6_A 271 RHEALLS 277 (306)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9988764
No 29
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.4e-44 Score=364.93 Aligned_cols=200 Identities=27% Similarity=0.498 Sum_probs=171.1
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----hccccEEEEecCCCCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----EVKRRTGFVAQNNVFY 123 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~ 123 (604)
++.+|+|+|+++++||+++|+||||||||||||+|+|+++ |++|+|.++|+++.. .+++.+|||+|++.++
T Consensus 21 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~ 95 (247)
T 2ff7_A 21 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI-----PENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLL 95 (247)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCT
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccc
Confidence 4679999999999999999999999999999999999985 679999999999853 3567899999999888
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccc-------cccCccCCCcCHHHHHHHHHHHHHhhCC
Q 046786 124 PHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNS-------IIGGRLVRGLSGGERKRISIGQELLINP 196 (604)
Q Consensus 124 ~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~-------~vg~~~~~~LSgGerqRvsia~~L~~~p 196 (604)
+ .||+||+.++. + ... .++++++++.+++.+..+. .++ +.++.|||||||||+|||+|+.+|
T Consensus 96 ~-~tv~enl~~~~----~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~-~~~~~LSgGq~qRv~iAraL~~~p 164 (247)
T 2ff7_A 96 N-RSIIDNISLAN----P-GMS----VEKVIYAAKLAGAHDFISELREGYNTIVG-EQGAGLSGGQRQRIAIARALVNNP 164 (247)
T ss_dssp T-SBHHHHHTTTC----T-TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCS-TTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred c-ccHHHHHhccC----C-CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhh-CCCCCCCHHHHHHHHHHHHHhcCC
Confidence 6 59999998752 1 112 2346677888888765443 233 457899999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 197 SLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 197 ~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
++|+|||||+|||+.++..+++.|++++ +|+|||++||++. .+ ..+|++++| ++|++++.|+++++.
T Consensus 165 ~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~-~~-~~~d~v~~l-~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 165 KILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS-TV-KNADRIIVM-EKGKIVEQGKHKELL 231 (247)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG-GG-TTSSEEEEE-ETTEEEEEECHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH-HH-HhCCEEEEE-ECCEEEEECCHHHHH
Confidence 9999999999999999999999999995 5999999999986 34 459999999 899999999988764
No 30
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.4e-44 Score=364.13 Aligned_cols=204 Identities=27% Similarity=0.426 Sum_probs=173.7
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----hccccEEEEecCCCC
Q 046786 47 EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----EVKRRTGFVAQNNVF 122 (604)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l 122 (604)
+++.+|+|+|+++++||+++|+||||||||||||+|+|+++ |++|+|.++|+++.. .+++.+|||+|++.+
T Consensus 13 ~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l 87 (243)
T 1mv5_A 13 DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ-----PTAGEITIDGQPIDNISLENWRSQIGFVSQDSAI 87 (243)
T ss_dssp SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC-----CSBSCEEETTEESTTTSCSCCTTTCCEECCSSCC
T ss_pred CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCcc
Confidence 34679999999999999999999999999999999999985 579999999998743 356789999999988
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc------CccCCCcCHHHHHHHHHHHHHhhCC
Q 046786 123 YPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIG------GRLVRGLSGGERKRISIGQELLINP 196 (604)
Q Consensus 123 ~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg------~~~~~~LSgGerqRvsia~~L~~~p 196 (604)
++ .||+||+.++.. + ... .++++++++.+++.+..+.... ++.+.+|||||||||+|||+|+.+|
T Consensus 88 ~~-~tv~enl~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p 158 (243)
T 1mv5_A 88 MA-GTIRENLTYGLE---G-DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNP 158 (243)
T ss_dssp CC-EEHHHHTTSCTT---S-CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred cc-ccHHHHHhhhcc---C-CCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCC
Confidence 87 599999987421 1 122 2347788999999876553321 2457899999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHHH
Q 046786 197 SLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVIN 268 (604)
Q Consensus 197 ~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~~ 268 (604)
++|+|||||+|||+.++..+++.|++++ +|+|||++||++. .+ ..+|++++| ++|+++..|+++++.+
T Consensus 159 ~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l-~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 159 KILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS-TI-VDADKIYFI-EKGQITGSGKHNELVA 226 (243)
T ss_dssp SEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH-HH-HHCSEEEEE-ETTEECCCSCHHHHHH
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH-HH-HhCCEEEEE-ECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999998 6999999999975 44 469999999 8999999999887753
No 31
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=8.7e-45 Score=358.41 Aligned_cols=202 Identities=20% Similarity=0.333 Sum_probs=170.8
Q ss_pred hhheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhcc
Q 046786 31 DMLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVK 110 (604)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~ 110 (604)
.+++..|+++.+ ++ ++|+|+|+++++||+++|+||||||||||||+|+|+++ |++|+|.++|+++. ..+
T Consensus 9 ~~l~~~~ls~~y----~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~~~-~~~ 77 (214)
T 1sgw_A 9 SKLEIRDLSVGY----DK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK-----PLKGEIIYNGVPIT-KVK 77 (214)
T ss_dssp CEEEEEEEEEES----SS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEEGG-GGG
T ss_pred ceEEEEEEEEEe----CC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEhh-hhc
Confidence 346666665543 33 79999999999999999999999999999999999985 67999999999876 457
Q ss_pred ccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHH
Q 046786 111 RRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQ 190 (604)
Q Consensus 111 ~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~ 190 (604)
+.++||+|++.+++.+||+||+.++...+.. .. + .++++++++.+||.+. + +.+.+|||||||||+||+
T Consensus 78 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~---~-~~~~~~~l~~~gl~~~-~-----~~~~~LSgGqkqrv~lar 146 (214)
T 1sgw_A 78 GKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KV---N-KNEIMDALESVEVLDL-K-----KKLGELSQGTIRRVQLAS 146 (214)
T ss_dssp GGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CC---C-HHHHHHHHHHTTCCCT-T-----SBGGGSCHHHHHHHHHHH
T ss_pred CcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-ch---H-HHHHHHHHHHcCCCcC-C-----CChhhCCHHHHHHHHHHH
Confidence 7899999999999999999999997654311 11 1 3468889999999875 5 456799999999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeE
Q 046786 191 ELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSS 257 (604)
Q Consensus 191 ~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~ 257 (604)
+|+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||++. .+..++|+++++ +|++
T Consensus 147 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~--~~~~ 210 (214)
T 1sgw_A 147 TLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKY--STKI 210 (214)
T ss_dssp HTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGG--BC--
T ss_pred HHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEe--CCcc
Confidence 999999999999999999999999999999999877999999999986 567778887765 4554
No 32
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=3.8e-43 Score=357.10 Aligned_cols=216 Identities=23% Similarity=0.368 Sum_probs=176.3
Q ss_pred hhheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh---
Q 046786 31 DMLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--- 107 (604)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--- 107 (604)
.+++..|+++.+... ..+.+|+|+|+++++||+++|+||||||||||||+|+|+++ + +|+|.++|+++..
T Consensus 16 ~~l~i~~l~~~y~~~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~-~G~I~i~g~~i~~~~~ 88 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQ-TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-----A-EGDIKIGGKNVNKYNR 88 (260)
T ss_dssp CCEEEEEEEECCTTC-CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----C-EEEEEETTEEGGGBCH
T ss_pred CeEEEEEEEEEeCCC-CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC-----C-CeEEEECCEEhhhcCH
Confidence 346666766544221 12469999999999999999999999999999999999975 3 7999999998742
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccCCCcC
Q 046786 108 -EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLAR-------CRNSIIGGRLVRGLS 179 (604)
Q Consensus 108 -~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LS 179 (604)
..++.+|||+|++.+++ .||+||+.++. . ...+ +++.+.++.+++.+ ..++.++ +.+..||
T Consensus 89 ~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~----~-~~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~-~~~~~LS 157 (260)
T 2ghi_A 89 NSIRSIIGIVPQDTILFN-ETIKYNILYGK----L-DATD----EEVIKATKSAQLYDFIEALPKKWDTIVG-NKGMKLS 157 (260)
T ss_dssp HHHHTTEEEECSSCCCCS-EEHHHHHHTTC----T-TCCH----HHHHHHHHHTTCHHHHHTSTTGGGCEES-SSSBCCC
T ss_pred HHHhccEEEEcCCCcccc-cCHHHHHhccC----C-CCCH----HHHHHHHHHhCCHHHHHhcccccccccc-CCcCcCC
Confidence 35678999999999886 59999998742 1 1122 23556677666543 3445454 5678999
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEE
Q 046786 180 GGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLY 259 (604)
Q Consensus 180 gGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~ 259 (604)
|||||||+|||+|+.+|++|+|||||+|||+.++..+++.|+++++ |+|||++||++.. + ..+|++++| ++|+++.
T Consensus 158 gGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~-~-~~~d~i~~l-~~G~i~~ 233 (260)
T 2ghi_A 158 GGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-I-SSAESIILL-NKGKIVE 233 (260)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-S-TTCSEEEEE-ETTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEE-ECCEEEE
Confidence 9999999999999999999999999999999999999999999975 8999999999863 4 469999999 8999999
Q ss_pred ecChhhHHH
Q 046786 260 FGKGEDVIN 268 (604)
Q Consensus 260 ~G~~~~~~~ 268 (604)
.|+++++..
T Consensus 234 ~g~~~~l~~ 242 (260)
T 2ghi_A 234 KGTHKDLLK 242 (260)
T ss_dssp EECHHHHHH
T ss_pred ECCHHHHHh
Confidence 999887753
No 33
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.3e-43 Score=358.95 Aligned_cols=209 Identities=22% Similarity=0.272 Sum_probs=176.2
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-hccc
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-EVKR 111 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-~~~~ 111 (604)
++..|+++.+......+.+|+|+|++++ ||+++|+||||||||||||+|+|++ + ++|+|.++|+++.. ..++
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p-----~~G~I~~~g~~~~~~~~~~ 74 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P-----YSGNIFINGMEVRKIRNYI 74 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C-----CEEEEEETTEEGGGCSCCT
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C-----CCcEEEECCEECcchHHhh
Confidence 3455655554321112579999999999 9999999999999999999999987 4 58999999998743 1256
Q ss_pred cEE-EEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCcCHHHHHHHHHH
Q 046786 112 RTG-FVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLA-RCRNSIIGGRLVRGLSGGERKRISIG 189 (604)
Q Consensus 112 ~i~-yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRvsia 189 (604)
.++ ||+|++.+ .+||+||+.+..... ... .++++++++.+||. +..+ +++.+|||||||||+||
T Consensus 75 ~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~~----~~~~~~~l~~~gl~~~~~~-----~~~~~LSgGqkqRv~lA 140 (263)
T 2pjz_A 75 RYSTNLPEAYEI--GVTVNDIVYLYEELK---GLD----RDLFLEMLKALKLGEEILR-----RKLYKLSAGQSVLVRTS 140 (263)
T ss_dssp TEEECCGGGSCT--TSBHHHHHHHHHHHT---CCC----HHHHHHHHHHTTCCGGGGG-----SBGGGSCHHHHHHHHHH
T ss_pred heEEEeCCCCcc--CCcHHHHHHHhhhhc---chH----HHHHHHHHHHcCCChhHhc-----CChhhCCHHHHHHHHHH
Confidence 799 99999887 789999999876543 111 34688999999998 7766 44669999999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcC-eEEEEecCCeEEEecChhhHH
Q 046786 190 QELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFN-KILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 190 ~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d-~v~ll~~~G~~v~~G~~~~~~ 267 (604)
++|+.+|++|+|||||+|||+.++..+.+.|+++++ |||++||++. .+..++| ++++| ++|++++.|+++++.
T Consensus 141 raL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l-~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 141 LALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFL-VGNRLQGPISVSELL 214 (263)
T ss_dssp HHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEE-ETTEEEEEEEHHHHH
T ss_pred HHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEE-ECCEEEEecCHHHHH
Confidence 999999999999999999999999999999999864 9999999985 5678899 99999 899999999998775
No 34
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=3.2e-42 Score=343.94 Aligned_cols=204 Identities=29% Similarity=0.456 Sum_probs=163.4
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccc
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKR 111 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~ 111 (604)
+++..|+++.+. .+++.+|+|+|+++++||+++|+||||||||||||+|+|+++ |++|+|.++|
T Consensus 6 ~l~~~~l~~~y~--~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g--------- 69 (229)
T 2pze_A 6 EVVMENVTAFWE--EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-----PSEGKIKHSG--------- 69 (229)
T ss_dssp EEEEEEEEECSS--TTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEECS---------
T ss_pred eEEEEEEEEEeC--CCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCccEEEECC---------
Confidence 355556544321 134679999999999999999999999999999999999985 6799999998
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCccCCCcCHHHHH
Q 046786 112 RTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARC-------RNSIIGGRLVRGLSGGERK 184 (604)
Q Consensus 112 ~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~~~~~~LSgGerq 184 (604)
.++|++|++.+++. ||+||+.++.. .... +.++.++.+++.+. .++.++ +.+.+|||||||
T Consensus 70 ~i~~v~q~~~~~~~-tv~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LSgGqkq 137 (229)
T 2pze_A 70 RISFCSQFSWIMPG-TIKENIIFGVS------YDEY----RYRSVIKACQLEEDISKFAEKDNIVLG-EGGITLSGGQRA 137 (229)
T ss_dssp CEEEECSSCCCCSB-CHHHHHHTTSC------CCHH----HHHHHHHHTTCHHHHTTSTTGGGSCBC-TTCTTSCHHHHH
T ss_pred EEEEEecCCcccCC-CHHHHhhccCC------cChH----HHHHHHHHhCcHHHHHhCccccccccc-CCCCcCCHHHHH
Confidence 49999999998885 99999987421 1111 23334444554432 223333 446799999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecCh
Q 046786 185 RISIGQELLINPSLLFLDEPTSGLDSTMAKKILVS-LSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKG 263 (604)
Q Consensus 185 Rvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~-l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~ 263 (604)
||+|||+|+.+|++++|||||+|||+.++..+++. +++++ +|+|||++||++. .+ ..+|++++| ++|++++.|++
T Consensus 138 rv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l-~~G~i~~~g~~ 213 (229)
T 2pze_A 138 RISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILIL-HEGSSYFYGTF 213 (229)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHCSEEEEE-ETTEEEEEECH
T ss_pred HHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH-HH-HhCCEEEEE-ECCEEEEECCH
Confidence 99999999999999999999999999999999997 46665 4899999999975 44 459999999 89999999998
Q ss_pred hhHH
Q 046786 264 EDVI 267 (604)
Q Consensus 264 ~~~~ 267 (604)
+++.
T Consensus 214 ~~~~ 217 (229)
T 2pze_A 214 SELQ 217 (229)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 35
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=6.8e-42 Score=343.27 Aligned_cols=210 Identities=23% Similarity=0.431 Sum_probs=162.9
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhcccc
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRR 112 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~ 112 (604)
++..|+++.+.. +++.+|+|+|+++++||+++|+||||||||||||+|+|+++ |++|+|.++| .
T Consensus 4 l~~~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g---------~ 67 (237)
T 2cbz_A 4 ITVRNATFTWAR--SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD-----KVEGHVAIKG---------S 67 (237)
T ss_dssp EEEEEEEEESCT--TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE-----EEEEEEEECS---------C
T ss_pred EEEEEEEEEeCC--CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECC---------E
Confidence 555566554321 14679999999999999999999999999999999999985 6799999998 3
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCcCHHHHHHHHHHHH
Q 046786 113 TGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLAR-CRNSIIGGRLVRGLSGGERKRISIGQE 191 (604)
Q Consensus 113 i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRvsia~~ 191 (604)
+|||+|++.+ +.+||+||+.++... .....++.....++.+.+++.+ ..++.++ +.+.+|||||||||+|||+
T Consensus 68 i~~v~Q~~~~-~~~tv~enl~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LSgGqkqRv~lAra 141 (237)
T 2cbz_A 68 VAYVPQQAWI-QNDSLRENILFGCQL----EEPYYRSVIQACALLPDLEILPSGDRTEIG-EKGVNLSGGQKQRVSLARA 141 (237)
T ss_dssp EEEECSSCCC-CSEEHHHHHHTTSCC----CTTHHHHHHHHTTCHHHHTTSTTGGGSEES-TTSBCCCHHHHHHHHHHHH
T ss_pred EEEEcCCCcC-CCcCHHHHhhCcccc----CHHHHHHHHHHHhhHHHHHhcccccccccc-CCCCCCCHHHHHHHHHHHH
Confidence 9999999865 578999999875311 1111111111111233344322 1223333 5678999999999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHHH
Q 046786 192 LLINPSLLFLDEPTSGLDSTMAKKILVSLS---KLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVIN 268 (604)
Q Consensus 192 L~~~p~illLDEPtsgLD~~~~~~i~~~l~---~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~~ 268 (604)
|+.+|++|+|||||+|||+.++..+++.|+ +++ +|+|||++||++.. + ..+|++++| ++|+++..|+++++.+
T Consensus 142 L~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l-~~G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 142 VYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIVM-SGGKISEMGSYQELLA 217 (237)
T ss_dssp HHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEEE-ETTEEEEEECHHHHHH
T ss_pred HhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEEE-eCCEEEEeCCHHHHhh
Confidence 999999999999999999999999999995 443 48999999999864 4 569999999 8999999999887753
No 36
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.1e-42 Score=369.41 Aligned_cols=214 Identities=21% Similarity=0.320 Sum_probs=176.9
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
.++..|+++.+. .+++.+|+|||++|++||+++|+||||||||||||+|+|+++ ++|+|.++|+++..
T Consensus 19 ~i~~~~l~~~y~--~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~------~~G~I~i~G~~i~~~~~~ 90 (390)
T 3gd7_A 19 QMTVKDLTAKYT--EGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN------TEGEIQIDGVSWDSITLE 90 (390)
T ss_dssp CEEEEEEEEESS--SSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE------EEEEEEESSCBTTSSCHH
T ss_pred eEEEEEEEEEec--CCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC------CCeEEEECCEECCcCChH
Confidence 355666655432 134679999999999999999999999999999999999873 58999999998853
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC------ccCCCcCHH
Q 046786 108 EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGG------RLVRGLSGG 181 (604)
Q Consensus 108 ~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~------~~~~~LSgG 181 (604)
.+++.+|||+|++.+|+ +||+||+.+.. ... .+++.++++.++|.+..+.+... +....||||
T Consensus 91 ~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGG 159 (390)
T 3gd7_A 91 QWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHG 159 (390)
T ss_dssp HHHHTEEEESCCCCCCS-EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHH
T ss_pred HHhCCEEEEcCCcccCc-cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHH
Confidence 35678999999999997 69999996321 112 24578899999998766643321 122339999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 182 ERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 182 erqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
|||||+|||||+.+|++|||||||||||+..+..+.+.|+++. .|+|+|+++|++. ....+|++++| ++|+++..|
T Consensus 160 qrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl-~~G~i~~~g 235 (390)
T 3gd7_A 160 HKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVI-EENKVRQYD 235 (390)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEE-ETTEEEEES
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEE-ECCEEEEEC
Confidence 9999999999999999999999999999999999999999875 4899999999974 44679999999 899999999
Q ss_pred ChhhHHH
Q 046786 262 KGEDVIN 268 (604)
Q Consensus 262 ~~~~~~~ 268 (604)
+++++.+
T Consensus 236 ~~~el~~ 242 (390)
T 3gd7_A 236 SILELYH 242 (390)
T ss_dssp SHHHHHH
T ss_pred CHHHHHh
Confidence 9998854
No 37
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=6.2e-41 Score=378.81 Aligned_cols=218 Identities=28% Similarity=0.445 Sum_probs=179.3
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~ 108 (604)
++..|+++.+... .++.+|+|+|+++++||++||+||||||||||+|+|+|+++ |++|+|.+||+++.+ .
T Consensus 342 i~~~~v~~~y~~~-~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~-----p~~G~i~~~g~~i~~~~~~~ 415 (595)
T 2yl4_A 342 LEFKNVHFAYPAR-PEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD-----PASGTISLDGHDIRQLNPVW 415 (595)
T ss_dssp EEEEEEEEECSSC-TTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSC-----CSEEEEEETTEETTTBCHHH
T ss_pred EEEEEEEEEeCCC-CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCcEEEECCEEhhhCCHHH
Confidence 5555665544211 13569999999999999999999999999999999999985 679999999999853 4
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccCCCcCHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLAR-------CRNSIIGGRLVRGLSGG 181 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgG 181 (604)
+++.+|||+|++.+++. ||+||+.++.... ...+ +++++++++.+++.+ ..||.+| +...+||||
T Consensus 416 ~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~--~~~~----~~~~~~~~~~~~l~~~~~~l~~g~~~~~~-~~~~~LSgG 487 (595)
T 2yl4_A 416 LRSKIGTVSQEPILFSC-SIAENIAYGADDP--SSVT----AEEIQRVAEVANAVAFIRNFPQGFNTVVG-EKGVLLSGG 487 (595)
T ss_dssp HHHSEEEECSSCCCCSS-BHHHHHHTTSSST--TTSC----HHHHHHHHHHTTCHHHHHTSSSGGGCBCS-SSSCCCCHH
T ss_pred HHhceEEEccCCcccCC-CHHHHHhhcCCCc--cccC----HHHHHHHHHHcCCHHHHHhCccccccccc-CCCCcCCHH
Confidence 57789999999999874 9999998853210 0122 235677888887643 4577777 457899999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 182 ERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 182 erqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
||||++|||||+++|++++|||||||||+.++..+.+.|+++.+ |+|+|+++|+++ .+ ..+|++++| ++|+++..|
T Consensus 488 q~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l-~~G~i~~~g 563 (595)
T 2yl4_A 488 QKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLS-TI-KNANMVAVL-DQGKITEYG 563 (595)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHH-HH-HHSSEEEEE-ETTEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HH-HcCCEEEEE-ECCEEEEEC
Confidence 99999999999999999999999999999999999999999986 899999999985 34 569999999 899999999
Q ss_pred ChhhHHH
Q 046786 262 KGEDVIN 268 (604)
Q Consensus 262 ~~~~~~~ 268 (604)
+++++.+
T Consensus 564 ~~~~l~~ 570 (595)
T 2yl4_A 564 KHEELLS 570 (595)
T ss_dssp CSCC---
T ss_pred CHHHHHh
Confidence 9887753
No 38
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=4.3e-41 Score=379.16 Aligned_cols=216 Identities=26% Similarity=0.432 Sum_probs=180.6
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---- 107 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---- 107 (604)
+++..|+++.+.. +++.+|+|+|+++++||+++|+||||||||||+|+|+|+++ |++|+|.+||+++.+
T Consensus 341 ~i~~~~v~~~y~~--~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~-----p~~G~i~~~g~~~~~~~~~ 413 (582)
T 3b5x_A 341 EVDVKDVTFTYQG--KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD-----VDSGSICLDGHDVRDYKLT 413 (582)
T ss_pred eEEEEEEEEEcCC--CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCCEEEECCEEhhhCCHH
Confidence 4556666655421 12579999999999999999999999999999999999985 679999999998742
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCccCCCcCH
Q 046786 108 EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARC-------RNSIIGGRLVRGLSG 180 (604)
Q Consensus 108 ~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~~~~~~LSg 180 (604)
.+++.+|||+|++.+++. ||+||+.++.. + ..+ ++++++.++.+++.+. .||.+| +...+|||
T Consensus 414 ~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~-~~~~~LSg 483 (582)
T 3b5x_A 414 NLRRHFALVSQNVHLFND-TIANNIAYAAE---G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIG-ENGTSLSG 483 (582)
T ss_pred HHhcCeEEEcCCCccccc-cHHHHHhccCC---C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhc-CCCCcCCH
Confidence 467789999999999875 99999988531 1 122 2346677777777543 456676 45789999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEe
Q 046786 181 GERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYF 260 (604)
Q Consensus 181 GerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~ 260 (604)
|||||++|||||+++|++++|||||||||+.++..+.+.|+++.+ |+|+|+++|+++ .+ ..+|++++| ++|+++..
T Consensus 484 Gq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l-~~G~i~~~ 559 (582)
T 3b5x_A 484 GQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLS-TI-EQADEILVV-DEGEIIER 559 (582)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH-HH-HhCCEEEEE-ECCEEEEE
Confidence 999999999999999999999999999999999999999999875 999999999986 34 579999999 89999999
Q ss_pred cChhhHHH
Q 046786 261 GKGEDVIN 268 (604)
Q Consensus 261 G~~~~~~~ 268 (604)
|+++++.+
T Consensus 560 g~~~~l~~ 567 (582)
T 3b5x_A 560 GRHADLLA 567 (582)
T ss_pred CCHHHHHh
Confidence 99988753
No 39
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=7.8e-41 Score=377.11 Aligned_cols=215 Identities=26% Similarity=0.422 Sum_probs=179.7
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~ 108 (604)
++..|+++.+.. +++.+|+|+|+++++||++||+||||||||||+|+|+|+++ |++|+|.+||+++.+ .
T Consensus 342 i~~~~v~~~y~~--~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~-----p~~G~i~~~g~~~~~~~~~~ 414 (582)
T 3b60_A 342 LEFRNVTFTYPG--REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD-----IDEGHILMDGHDLREYTLAS 414 (582)
T ss_dssp EEEEEEEECSSS--SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC-----CSEEEEEETTEETTTBCHHH
T ss_pred EEEEEEEEEcCC--CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC-----CCCCeEEECCEEccccCHHH
Confidence 455555443311 12679999999999999999999999999999999999985 679999999999853 4
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccCCCcCHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLAR-------CRNSIIGGRLVRGLSGG 181 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgG 181 (604)
+++.+|||+|++.+++. ||+||+.++.. + ..++ ++++++++.+++.+ -.||.+| +...+||||
T Consensus 415 ~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~~----~~~~~~l~~~~l~~~~~~~p~g~~~~~~-~~~~~LSgG 484 (582)
T 3b60_A 415 LRNQVALVSQNVHLFND-TVANNIAYART---E-EYSR----EQIEEAARMAYAMDFINKMDNGLDTIIG-ENGVLLSGG 484 (582)
T ss_dssp HHHTEEEECSSCCCCSS-BHHHHHHTTTT---S-CCCH----HHHHHHHHTTTCHHHHHHSTTGGGSBCC-TTSCSSCHH
T ss_pred HHhhCeEEccCCcCCCC-CHHHHHhccCC---C-CCCH----HHHHHHHHHcCCHHHHHhcccccccccc-CCCCCCCHH
Confidence 57789999999999875 99999987531 1 1222 34667777777754 3467776 557899999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 182 ERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 182 erqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
||||++|||||+++|++++|||||||||+.++..+.+.|+++.+ |+|+|+++|+++. + ..+|++++| ++|+++..|
T Consensus 485 q~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l-~~G~i~~~g 560 (582)
T 3b60_A 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST-I-EQADEIVVV-EDGIIVERG 560 (582)
T ss_dssp HHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG-T-TTCSEEEEE-ETTEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH-H-HhCCEEEEE-ECCEEEEec
Confidence 99999999999999999999999999999999999999999975 9999999999863 4 579999999 899999999
Q ss_pred ChhhHHH
Q 046786 262 KGEDVIN 268 (604)
Q Consensus 262 ~~~~~~~ 268 (604)
+++++.+
T Consensus 561 ~~~~l~~ 567 (582)
T 3b60_A 561 THSELLA 567 (582)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 9988764
No 40
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=9.6e-41 Score=375.96 Aligned_cols=214 Identities=28% Similarity=0.457 Sum_probs=176.8
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~ 108 (604)
++..|+++.+. .+++.+|+|+|+++++||++||+||||||||||+|+|+|+++ |++|+|.++|+++.. .
T Consensus 340 i~~~~v~~~y~--~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~-----p~~G~i~~~g~~~~~~~~~~ 412 (578)
T 4a82_A 340 IDIDHVSFQYN--DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD-----VTSGQILIDGHNIKDFLTGS 412 (578)
T ss_dssp EEEEEEEECSC--SSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC-----CSEEEEEETTEEGGGSCHHH
T ss_pred EEEEEEEEEcC--CCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCcEEEECCEEhhhCCHHH
Confidence 44445444322 134579999999999999999999999999999999999985 679999999999853 4
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCCCcCHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGL-------ARCRNSIIGGRLVRGLSGG 181 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgG 181 (604)
+++.+|||+|++.+++. ||+||+.++. + ..+++ ++.+.++..++ .+-.||.+| +...+||||
T Consensus 413 ~r~~i~~v~Q~~~l~~~-tv~eni~~~~----~-~~~~~----~~~~~~~~~~~~~~~~~lp~g~~t~~~-~~g~~LSgG 481 (578)
T 4a82_A 413 LRNQIGLVQQDNILFSD-TVKENILLGR----P-TATDE----EVVEAAKMANAHDFIMNLPQGYDTEVG-ERGVKLSGG 481 (578)
T ss_dssp HHHTEEEECSSCCCCSS-BHHHHHGGGC----S-SCCHH----HHHHHHHHTTCHHHHHTSTTGGGCBCC-GGGTTSCHH
T ss_pred HhhheEEEeCCCccCcc-cHHHHHhcCC----C-CCCHH----HHHHHHHHhCcHHHHHhCcchhhhhhc-cCCCcCCHH
Confidence 67789999999999976 9999998752 1 12222 34445555544 345677777 567799999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 182 ERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 182 erqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
||||++|||||+.+|++++|||||||||+.++..+.+.|+++.+ |+|+|+++|+++. + ..+|++++| ++|+++..|
T Consensus 482 q~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~-~-~~~d~i~~l-~~G~i~~~g 557 (578)
T 4a82_A 482 QKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLST-I-THADKIVVI-ENGHIVETG 557 (578)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-T-TTCSEEEEE-ETTEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHH-H-HcCCEEEEE-ECCEEEEEC
Confidence 99999999999999999999999999999999999999999864 7999999999874 4 569999999 899999999
Q ss_pred ChhhHHH
Q 046786 262 KGEDVIN 268 (604)
Q Consensus 262 ~~~~~~~ 268 (604)
+++++.+
T Consensus 558 ~~~el~~ 564 (578)
T 4a82_A 558 THRELIA 564 (578)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9998864
No 41
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-40 Score=375.89 Aligned_cols=214 Identities=26% Similarity=0.431 Sum_probs=175.6
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~ 108 (604)
++..|+++.+. .+++.+|+|+|+++++||++||+||||||||||+|+|+|+++ |++|+|.+||+++.. .
T Consensus 342 i~~~~v~~~y~--~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~-----~~~G~i~i~g~~i~~~~~~~ 414 (587)
T 3qf4_A 342 VSFENVEFRYF--ENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID-----PERGRVEVDELDVRTVKLKD 414 (587)
T ss_dssp EEEEEEEECSS--SSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC-----CSEEEEEESSSBGGGBCHHH
T ss_pred EEEEEEEEEcC--CCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEECCEEcccCCHHH
Confidence 44445444321 234679999999999999999999999999999999999986 679999999999853 4
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccCCCcCHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLG-------LARCRNSIIGGRLVRGLSGG 181 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgG 181 (604)
++++++||||++.+++. ||+||+.++. + ..++++ +.+.++..+ +.+-.||.+| +...+||||
T Consensus 415 ~r~~i~~v~Q~~~lf~~-tv~eni~~~~----~-~~~~~~----~~~~~~~~~~~~~i~~l~~g~~~~~~-~~~~~LSgG 483 (587)
T 3qf4_A 415 LRGHISAVPQETVLFSG-TIKENLKWGR----E-DATDDE----IVEAAKIAQIHDFIISLPEGYDSRVE-RGGRNFSGG 483 (587)
T ss_dssp HHHHEEEECSSCCCCSE-EHHHHHTTTC----S-SCCHHH----HHHHHHHTTCHHHHHTSSSGGGCEEC-SSSCSSCHH
T ss_pred HHhheEEECCCCcCcCc-cHHHHHhccC----C-CCCHHH----HHHHHHHhCcHHHHHhcccchhhHhc-CCCCCcCHH
Confidence 67889999999999975 9999998652 1 122322 223333333 3345577777 567899999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 182 ERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 182 erqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
||||++|||||+++|++|+||||||+||+.++..+.+.|+++. +|+|+|+++|+++. ...+|++++| ++|+++..|
T Consensus 484 qrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~--~~~~d~i~vl-~~G~i~~~g 559 (587)
T 3qf4_A 484 QKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPT--ALLADKILVL-HEGKVAGFG 559 (587)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHH--HTTSSEEEEE-ETTEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHH--HHhCCEEEEE-ECCEEEEEC
Confidence 9999999999999999999999999999999999999999985 48999999999863 4589999999 899999999
Q ss_pred ChhhHHH
Q 046786 262 KGEDVIN 268 (604)
Q Consensus 262 ~~~~~~~ 268 (604)
+++++.+
T Consensus 560 ~~~el~~ 566 (587)
T 3qf4_A 560 THKELLE 566 (587)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9998864
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.3e-40 Score=374.19 Aligned_cols=201 Identities=28% Similarity=0.485 Sum_probs=169.9
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----hccccEEEEecCCCCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----EVKRRTGFVAQNNVFY 123 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~ 123 (604)
++.+|+|+|+++++||++||+||||||||||+|+|+|+++ |++|+|.+||+++.+ .+++++|||+|++.++
T Consensus 367 ~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~-----p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf 441 (598)
T 3qf4_B 367 KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD-----VDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILF 441 (598)
T ss_dssp SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC-----CSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCC
T ss_pred CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC-----CCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccc
Confidence 4569999999999999999999999999999999999986 679999999999853 4678899999999998
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCCCcCHHHHHHHHHHHHHhhCC
Q 046786 124 PHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGL-------ARCRNSIIGGRLVRGLSGGERKRISIGQELLINP 196 (604)
Q Consensus 124 ~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p 196 (604)
+. ||+||+.++. + ..+++ .+.+.++..++ .+..||.+| +...+||||||||++|||||+.+|
T Consensus 442 ~~-tv~eni~~~~----~-~~~~~----~~~~~~~~~~~~~~~~~~~~g~~t~~~-~~g~~LSgGq~Qrv~iAral~~~p 510 (598)
T 3qf4_B 442 ST-TVKENLKYGN----P-GATDE----EIKEAAKLTHSDHFIKHLPEGYETVLT-DNGEDLSQGQRQLLAITRAFLANP 510 (598)
T ss_dssp SS-BHHHHHHSSS----T-TCCTT----HHHHHTTTTTCHHHHHTSTTGGGCBCH-HHHTTSCHHHHHHHHHHHHHHTCC
T ss_pred cc-cHHHHHhcCC----C-CCCHH----HHHHHHHHhCCHHHHHhccccccchhc-CCCCCCCHHHHHHHHHHHHHhcCC
Confidence 64 9999998752 1 11221 23344444443 334566666 556789999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHHH
Q 046786 197 SLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVIN 268 (604)
Q Consensus 197 ~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~~ 268 (604)
++|+||||||+||+.++..+.+.|+++. +|+|+|+++|+++. + ..+|++++| ++|+++..|+++++.+
T Consensus 511 ~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l-~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 511 KILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT-I-KNADLIIVL-RDGEIVEMGKHDELIQ 578 (598)
T ss_dssp SEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH-H-HHCSEEEEE-CSSSEEECSCHHHHHH
T ss_pred CEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEE-ECCEEEEECCHHHHHh
Confidence 9999999999999999999999999996 58999999999874 4 459999999 8999999999988764
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1.3e-39 Score=335.66 Aligned_cols=188 Identities=31% Similarity=0.492 Sum_probs=154.2
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCH
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTV 128 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv 128 (604)
+.+|+|+|+++++||+++|+||||||||||||+|+|+++ |++|+|.++| .++||+|++.+++. ||
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g---------~i~~v~Q~~~l~~~-tv 115 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-----PSEGKIKHSG---------RISFCSQNSWIMPG-TI 115 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC-----EEEEEEECCS---------CEEEECSSCCCCSS-BH
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECC---------EEEEEeCCCccCcc-cH
Confidence 569999999999999999999999999999999999985 6799999998 49999999988885 99
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEE
Q 046786 129 AETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCR-------NSIIGGRLVRGLSGGERKRISIGQELLINPSLLFL 201 (604)
Q Consensus 129 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illL 201 (604)
+||+. +. . ... ..+++.++.+++.+.. ++.++ +.+..||||||||++|||+|+.+|++|+|
T Consensus 116 ~enl~-~~--~----~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~LSgGq~QRv~lAraL~~~p~lllL 183 (290)
T 2bbs_A 116 KENII-GV--S----YDE----YRYRSVIKACQLEEDISKFAEKDNIVLG-EGGITLSGGQRARISLARAVYKDADLYLL 183 (290)
T ss_dssp HHHHH-TT--C----CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred HHHhh-Cc--c----cch----HHHHHHHHHhChHHHHHhccccccchhc-CccCcCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 99997 31 1 111 1233445555554322 23333 34679999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 202 DEPTSGLDSTMAKKILVSL-SKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 202 DEPtsgLD~~~~~~i~~~l-~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
||||+|||+.++..+++.+ ++++ +|+|||++||++. .+ ..+|++++| ++|++++.|+++++.
T Consensus 184 DEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~-~~-~~~d~i~~l-~~G~i~~~g~~~~l~ 246 (290)
T 2bbs_A 184 DSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILIL-HEGSSYFYGTFSELQ 246 (290)
T ss_dssp ESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHSSEEEEE-ETTEEEEEECHHHHH
T ss_pred ECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH-HH-HcCCEEEEE-ECCeEEEeCCHHHHh
Confidence 9999999999999999974 5664 4899999999975 44 469999999 899999999998875
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.2e-38 Score=387.86 Aligned_cols=217 Identities=28% Similarity=0.460 Sum_probs=182.0
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~ 108 (604)
++..|+++.+.. .++.++|+|||++|+|||.+||+||||||||||+++|.|+++ |++|+|.+||.++.+ .
T Consensus 1077 I~f~nVsf~Y~~-~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-----p~~G~I~iDG~di~~i~~~~ 1150 (1321)
T 4f4c_A 1077 VIFKNVRFAYPE-RPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD-----TLGGEIFIDGSEIKTLNPEH 1150 (1321)
T ss_dssp EEEEEEEECCTT-SCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC-----CSSSEEEETTEETTTBCHHH
T ss_pred EEEEEEEEeCCC-CCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc-----CCCCEEEECCEEhhhCCHHH
Confidence 444555544321 234569999999999999999999999999999999999985 679999999999864 5
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCCCcCHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGL-------ARCRNSIIGGRLVRGLSGG 181 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgG 181 (604)
+|++++||||++.+|+. |++|||.|+. -|...+++ .+.+.++..++ .+-.||.|| +....||||
T Consensus 1151 lR~~i~~V~Qdp~LF~g-TIreNI~~gl---d~~~~sd~----ei~~Al~~a~l~~~I~~Lp~GldT~vg-e~G~~LSgG 1221 (1321)
T 4f4c_A 1151 TRSQIAIVSQEPTLFDC-SIAENIIYGL---DPSSVTMA----QVEEAARLANIHNFIAELPEGFETRVG-DRGTQLSGG 1221 (1321)
T ss_dssp HHTTEEEECSSCCCCSE-EHHHHHSSSS---CTTTSCHH----HHHHHHHHTTCHHHHHTSTTTTCSEET-TTSCSSCHH
T ss_pred HHhheEEECCCCEeeCc-cHHHHHhccC---CCCCCCHH----HHHHHHHHhCChHHHHcCcCCCCCEec-CCCcccCHH
Confidence 78999999999999976 9999998752 12233433 35555665554 456799998 456789999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 182 ERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 182 erqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
||||++|||||+++|+||+||||||+||+.+...|.+.|+++. +|+|+|+++|.++. ..-+|+|++| ++|+++.+|
T Consensus 1222 QrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vl-d~G~IvE~G 1297 (1321)
T 4f4c_A 1222 QKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVV-SNGTIIEKG 1297 (1321)
T ss_dssp HHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEE-SSSSEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH--HHhCCEEEEE-ECCEEEEEC
Confidence 9999999999999999999999999999999999999998876 48999999999873 4679999999 899999999
Q ss_pred ChhhHHH
Q 046786 262 KGEDVIN 268 (604)
Q Consensus 262 ~~~~~~~ 268 (604)
+++++++
T Consensus 1298 th~eLl~ 1304 (1321)
T 4f4c_A 1298 THTQLMS 1304 (1321)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9999875
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=8e-38 Score=380.61 Aligned_cols=215 Identities=27% Similarity=0.451 Sum_probs=180.8
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~ 108 (604)
++..|+++.+. ..+++.+|+|+|+++++||.+||+||||||||||+++|.|.++ |++|+|.+||.++.+ .
T Consensus 416 I~~~nvsF~Y~-~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~-----~~~G~I~idG~~i~~~~~~~ 489 (1321)
T 4f4c_A 416 ITVENVHFTYP-SRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD-----VLKGKITIDGVDVRDINLEF 489 (1321)
T ss_dssp EEEEEEEECCS-SSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC-----CSEEEEEETTEETTTSCHHH
T ss_pred EEEEEeeeeCC-CCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccc-----cccCcccCCCccchhccHHH
Confidence 44455544432 2235679999999999999999999999999999999999985 679999999999864 5
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccCCCcCHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLG-------LARCRNSIIGGRLVRGLSGG 181 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgG 181 (604)
+|++||||+|++.+|.. |++||+.|+. + ..+++ ++.+.++..+ |.+-.||.||+ ....||||
T Consensus 490 lr~~i~~v~Q~~~Lf~~-TI~eNI~~g~----~-~~~~~----~v~~a~~~a~l~~~i~~lp~G~~T~vGe-~G~~LSGG 558 (1321)
T 4f4c_A 490 LRKNVAVVSQEPALFNC-TIEENISLGK----E-GITRE----EMVAACKMANAEKFIKTLPNGYNTLVGD-RGTQLSGG 558 (1321)
T ss_dssp HHHHEEEECSSCCCCSE-EHHHHHHTTC----T-TCCHH----HHHHHHHHTTCHHHHHHSTTTTSSEESS-SSCCCCHH
T ss_pred HhhcccccCCcceeeCC-chhHHHhhhc----c-cchHH----HHHHHHHHccchhHHHcCCCCCccEecC-CCCCCCHH
Confidence 78899999999999975 9999999863 1 23333 3444444443 45667999994 56689999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 182 ERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 182 erqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
||||++||||++++|+||+||||||+||+.+...+.+.|+++.+ |+|+|+++|+++ ....+|+|++| ++|+++..|
T Consensus 559 QkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~-~~T~iiiaHrls--~i~~aD~Iivl-~~G~ive~G 634 (1321)
T 4f4c_A 559 QKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIAHRLS--TIRNADLIISC-KNGQVVEVG 634 (1321)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT-TSEEEEECSCTT--TTTTCSEEEEE-ETTEEEEEE
T ss_pred HHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhC-CCEEEEEcccHH--HHHhCCEEEEe-eCCeeeccC
Confidence 99999999999999999999999999999999999999999875 899999999987 35789999999 899999999
Q ss_pred ChhhHHH
Q 046786 262 KGEDVIN 268 (604)
Q Consensus 262 ~~~~~~~ 268 (604)
+.+++.+
T Consensus 635 th~eL~~ 641 (1321)
T 4f4c_A 635 DHRALMA 641 (1321)
T ss_dssp CHHHHHT
T ss_pred CHHHHHH
Confidence 9998863
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.6e-37 Score=377.16 Aligned_cols=217 Identities=26% Similarity=0.429 Sum_probs=176.4
Q ss_pred heeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----h
Q 046786 33 LKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----E 108 (604)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~ 108 (604)
++..|+++.+.. ..++.+|+|||+++++||++||+||||||||||+++|+|.++ |++|+|.++|+++.. .
T Consensus 388 i~~~~v~~~y~~-~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~-----~~~G~i~i~g~~i~~~~~~~ 461 (1284)
T 3g5u_A 388 LEFKNIHFSYPS-RKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD-----PLDGMVSIDGQDIRTINVRY 461 (1284)
T ss_dssp EEEEEEEECCSS-TTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSC-----CSEEEEEETTEEGGGSCHHH
T ss_pred EEEEEEEEEcCC-CCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEHHhCCHHH
Confidence 444555444321 123569999999999999999999999999999999999985 679999999999853 4
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHH-----HHHHHHcCCCccccccccCccCCCcCHHHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHA-----EAVINQLGLARCRNSIIGGRLVRGLSGGER 183 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 183 (604)
+|+.+|||+|++.+++. ||+||+.++.. ..+.++..+.. .+.++. +.+..||.+| +...+||||||
T Consensus 462 ~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~-----~~~~~~~~~~~~~~~~~~~i~~--l~~g~~t~~~-~~g~~LSgGq~ 532 (1284)
T 3g5u_A 462 LREIIGVVSQEPVLFAT-TIAENIRYGRE-----DVTMDEIEKAVKEANAYDFIMK--LPHQFDTLVG-ERGAQLSGGQK 532 (1284)
T ss_dssp HHHHEEEECSSCCCCSS-CHHHHHHHHCS-----SCCHHHHHHHHHHTTCHHHHHH--STTGGGCCCS-SSSCSSCHHHH
T ss_pred HHhheEEEcCCCccCCc-cHHHHHhcCCC-----CCCHHHHHHHHHHhCcHHHHHh--cccccccccc-CCCCccCHHHH
Confidence 67789999999999976 99999998731 12333222111 222333 3455678888 56779999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecCh
Q 046786 184 KRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKG 263 (604)
Q Consensus 184 qRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~ 263 (604)
||++|||||+.+|+||+||||||+||+.+...+.+.++++. +|+|+|+++|+++ .+ ..+|++++| ++|++++.|++
T Consensus 533 QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~-~i-~~~d~i~vl-~~G~i~~~g~~ 608 (1284)
T 3g5u_A 533 QRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLS-TV-RNADVIAGF-DGGVIVEQGNH 608 (1284)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHH-HH-TTCSEEEEC-SSSCCCCEECH
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HcCCEEEEE-ECCEEEEECCH
Confidence 99999999999999999999999999999999999998876 4899999999986 44 459999999 89999999999
Q ss_pred hhHHH
Q 046786 264 EDVIN 268 (604)
Q Consensus 264 ~~~~~ 268 (604)
+++.+
T Consensus 609 ~~l~~ 613 (1284)
T 3g5u_A 609 DELMR 613 (1284)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98864
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=4.5e-37 Score=373.19 Aligned_cols=202 Identities=27% Similarity=0.462 Sum_probs=170.4
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----hccccEEEEecCCCCCC
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----EVKRRTGFVAQNNVFYP 124 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~ 124 (604)
+.+|+|+|+++++||++||+||||||||||+++|+|+++ |++|+|.+||+++.. .+|+.++||||++.+++
T Consensus 1046 ~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~-----p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~ 1120 (1284)
T 3g5u_A 1046 IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD-----PMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD 1120 (1284)
T ss_dssp CCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC-----CSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCS
T ss_pred CeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCEEEECCEEcccCCHHHHHhceEEECCCCcccc
Confidence 469999999999999999999999999999999999985 679999999999853 46788999999998875
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-------CCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCC
Q 046786 125 HLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQL-------GLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPS 197 (604)
Q Consensus 125 ~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~ 197 (604)
.||+||+.++... ...+.++ +.+.++.. .+.+..||.+| +....||||||||++|||+|+.+|+
T Consensus 1121 -~ti~eNi~~~~~~---~~~~~~~----i~~~~~~~~~~~~i~~l~~gldt~vg-e~G~~LSgGq~Qrv~iARal~~~p~ 1191 (1284)
T 3g5u_A 1121 -CSIAENIAYGDNS---RVVSYEE----IVRAAKEANIHQFIDSLPDKYNTRVG-DKGTQLSGGQKQRIAIARALVRQPH 1191 (1284)
T ss_dssp -SBHHHHHTCCCSS---CCCCHHH----HHHHHHHHTCHHHHSSTTTGGGCBCS-TTSCSSCHHHHHHHHHHHHHHHCCS
T ss_pred -ccHHHHHhccCCC---CCCCHHH----HHHHHHHhCcHHHHHhCccccccccC-CCCCccCHHHHHHHHHHHHHHcCCC
Confidence 5999999875311 1223332 22233333 34556788888 5577999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHHH
Q 046786 198 LLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVIN 268 (604)
Q Consensus 198 illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~~ 268 (604)
||+|||||+|||+.+...+.+.|++.. +|+|||+++|+++. + ..+|++++| ++|+++..|+++++.+
T Consensus 1192 iLiLDEpTs~lD~~~~~~i~~~l~~~~-~~~tvi~isH~l~~-i-~~~dri~vl-~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1192 ILLLDEATSALDTESEKVVQEALDKAR-EGRTCIVIAHRLST-I-QNADLIVVI-QNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp SEEEESCSSSCCHHHHHHHHHHHHHHS-SSSCEEEECSCTTG-G-GSCSEEEEE-ETBEEEEEECHHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecCHHH-H-HcCCEEEEE-ECCEEEEECCHHHHHh
Confidence 999999999999999999999998864 58999999999874 4 559999999 8999999999988764
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=3.9e-36 Score=338.60 Aligned_cols=191 Identities=25% Similarity=0.348 Sum_probs=165.2
Q ss_pred ceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCHH
Q 046786 50 MILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTVA 129 (604)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~ 129 (604)
..|+++|+++++||+++|+||||||||||||+|+|+++ |++|+|.+ .+.+||+||+..+.+.+||.
T Consensus 370 ~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~-----p~~G~I~~---------~~~i~~v~Q~~~~~~~~tv~ 435 (607)
T 3bk7_A 370 FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE-----PTEGKVEW---------DLTVAYKPQYIKAEYEGTVY 435 (607)
T ss_dssp CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC-----CSBSCCCC---------CCCEEEECSSCCCCCSSBHH
T ss_pred eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEE---------eeEEEEEecCccCCCCCcHH
Confidence 36899999999999999999999999999999999985 57899976 24699999998877889999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q 046786 130 ETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLD 209 (604)
Q Consensus 130 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD 209 (604)
|++....... ....++++++++.+||.+..+ +.+.+|||||||||+||++|+.+|++|||||||+|||
T Consensus 436 e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD 503 (607)
T 3bk7_A 436 ELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYD-----RNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLD 503 (607)
T ss_dssp HHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTT-----SBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCC
T ss_pred HHHHhhhccC-------CCHHHHHHHHHHHcCCchHhc-----CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCC
Confidence 9887641110 011346788999999987776 4566999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecC--CeEEEecChhhHHH
Q 046786 210 STMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSD--GSSLYFGKGEDVIN 268 (604)
Q Consensus 210 ~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~--G~~v~~G~~~~~~~ 268 (604)
+.++..+.+.|+++++ .|+|||+++||+. .+..++|++++| ++ |+++..|+++++.+
T Consensus 504 ~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl-~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 504 VEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVF-EGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEE-EEETTTEEEECCCEEHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-cCCcceEEecCCHHHHHh
Confidence 9999999999999974 6999999999975 677899999999 65 88889999998865
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=3.8e-36 Score=335.01 Aligned_cols=191 Identities=26% Similarity=0.359 Sum_probs=164.2
Q ss_pred ceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCHH
Q 046786 50 MILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTVA 129 (604)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~ 129 (604)
..|+++|+++++||++||+||||||||||||+|+|+.+ |++|+|.+ ...+|||+|+....+.+||.
T Consensus 300 ~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~-----p~~G~i~~---------~~~i~~v~Q~~~~~~~~tv~ 365 (538)
T 1yqt_A 300 FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE-----PTEGKIEW---------DLTVAYKPQYIKADYEGTVY 365 (538)
T ss_dssp EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC-----CSBCCCCC---------CCCEEEECSSCCCCCSSBHH
T ss_pred EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEE---------CceEEEEecCCcCCCCCcHH
Confidence 36899999999999999999999999999999999985 57899975 24699999998877889999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q 046786 130 ETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLD 209 (604)
Q Consensus 130 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD 209 (604)
|++........ ...++++++++.+|+.+..+ +.+..|||||||||+||++|+.+|++|+|||||+|||
T Consensus 366 ~~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~-----~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD 433 (538)
T 1yqt_A 366 ELLSKIDASKL-------NSNFYKTELLKPLGIIDLYD-----REVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLD 433 (538)
T ss_dssp HHHHHHHHHHH-------TCHHHHHHTTTTTTCGGGTT-----SBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCC
T ss_pred HHHHhhhccCC-------CHHHHHHHHHHHcCChhhhc-----CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCC
Confidence 98875411110 01246788999999987666 4566999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecC--CeEEEecChhhHHH
Q 046786 210 STMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSD--GSSLYFGKGEDVIN 268 (604)
Q Consensus 210 ~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~--G~~v~~G~~~~~~~ 268 (604)
+.++..+.+.|+++++ .|.|||+++||+. .+..++|++++| ++ |+++..|+++++.+
T Consensus 434 ~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl-~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 434 VEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVF-EGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEE-EEETTTEEEECCCEEHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-eCCcceEeecCCHHHHHh
Confidence 9999999999999974 5999999999975 678899999999 55 78899999988865
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.9e-35 Score=327.37 Aligned_cols=192 Identities=23% Similarity=0.288 Sum_probs=161.9
Q ss_pred ceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCHH
Q 046786 50 MILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTVA 129 (604)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~ 129 (604)
..|+++|+++++||+++|+||||||||||+|+|+|+++ |++|+|.++| +.++|++|+......+||.
T Consensus 282 ~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~~--------~~i~~~~q~~~~~~~~tv~ 348 (538)
T 3ozx_A 282 FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT-----ADEGSVTPEK--------QILSYKPQRIFPNYDGTVQ 348 (538)
T ss_dssp EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CSBCCEESSC--------CCEEEECSSCCCCCSSBHH
T ss_pred EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECC--------eeeEeechhcccccCCCHH
Confidence 35788899999999999999999999999999999986 6799998764 3589999997766788999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q 046786 130 ETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLD 209 (604)
Q Consensus 130 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD 209 (604)
|++.+..... ... ....++++++.+||.+..+ +.+.+|||||||||+||++|+.+|++|||||||+|||
T Consensus 349 ~~l~~~~~~~----~~~--~~~~~~~~l~~~~l~~~~~-----~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD 417 (538)
T 3ozx_A 349 QYLENASKDA----LST--SSWFFEEVTKRLNLHRLLE-----SNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLD 417 (538)
T ss_dssp HHHHHHCSST----TCT--TSHHHHHTTTTTTGGGCTT-----SBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCC
T ss_pred HHHHHhhhhc----cch--hHHHHHHHHHHcCCHHHhc-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCC
Confidence 9998742111 111 1235788999999987776 4566999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecC--CeEEEecChhhHH
Q 046786 210 STMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSD--GSSLYFGKGEDVI 267 (604)
Q Consensus 210 ~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~--G~~v~~G~~~~~~ 267 (604)
+.++..+.+.|+++++ .|+|||+++||+. .+..++|++++| ++ |.....+++.++.
T Consensus 418 ~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl-~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 418 VEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVF-KGEPEKAGLATSPVTLK 476 (538)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEE-EEETTTEEEECCCEEHH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-eCCcceeccCCChHHHH
Confidence 9999999999999986 5999999999975 678899999999 54 5667777776553
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-34 Score=326.56 Aligned_cols=193 Identities=23% Similarity=0.282 Sum_probs=162.0
Q ss_pred cceeeceEEEEecC-----eEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCC
Q 046786 49 KMILKGVSGAVSPG-----ELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFY 123 (604)
Q Consensus 49 ~~iL~~vs~~i~~G-----e~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~ 123 (604)
+.+++|+|+++++| |+++|+||||||||||||+|+|+++ |++|+. + .+..++|++|+....
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~-----p~~G~~------~---~~~~i~~~~q~~~~~ 425 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK-----PDEGQD------I---PKLNVSMKPQKIAPK 425 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC-----CSBCCC------C---CSCCEEEECSSCCCC
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC-----CCCCcC------c---cCCcEEEeccccccc
Confidence 35789999999999 7899999999999999999999986 567862 1 134699999997766
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeC
Q 046786 124 PHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDE 203 (604)
Q Consensus 124 ~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDE 203 (604)
...||+|++... .+ ..... .+.++++++.++|.+..+ +.+.+|||||||||+||++|+.+|++|+|||
T Consensus 426 ~~~tv~e~~~~~--~~--~~~~~---~~~~~~~l~~l~l~~~~~-----~~~~~LSGGqkQRv~iAraL~~~p~lLlLDE 493 (608)
T 3j16_B 426 FPGTVRQLFFKK--IR--GQFLN---PQFQTDVVKPLRIDDIID-----QEVQHLSGGELQRVAIVLALGIPADIYLIDE 493 (608)
T ss_dssp CCSBHHHHHHHH--CS--STTTS---HHHHHHTHHHHTSTTTSS-----SBSSSCCHHHHHHHHHHHHTTSCCSEEEECC
T ss_pred CCccHHHHHHHH--hh--ccccc---HHHHHHHHHHcCChhhhc-----CChhhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 667999987542 22 11111 235678999999988776 5567999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecC--CeEEEecChhhHHHH
Q 046786 204 PTSGLDSTMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSD--GSSLYFGKGEDVINY 269 (604)
Q Consensus 204 PtsgLD~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~--G~~v~~G~~~~~~~~ 269 (604)
||+|||+.++..+++.|+++++ .|+|||++|||+. .+..++|++++| ++ |+++..|+|+++.+-
T Consensus 494 PT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl-~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 494 PSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVF-EGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEC-EEETTTEEECCCCEEHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-eCCCCeEEecCChHHHhhh
Confidence 9999999999999999999974 6999999999975 678899999999 54 899999999988653
No 52
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1e-34 Score=332.48 Aligned_cols=212 Identities=23% Similarity=0.336 Sum_probs=141.5
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHH---------------------HHHHcCCCCCC--CCccccEEEECCEe
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLL---------------------TALGGRLSNGK--DTVTQGHITYNGKQ 104 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL---------------------~~L~g~~~~~~--~~~~~G~I~~~G~~ 104 (604)
.+.+|+|||++|++||+++|+||||||||||+ ++++|+.++.. +....|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 45699999999999999999999999999998 77777665320 01115677788776
Q ss_pred CChhccccEEEEecCCCC-------------------CCCCCHHHHHHHHHHhcCCCCCCHHHHH------HHHHHHHHH
Q 046786 105 FSAEVKRRTGFVAQNNVF-------------------YPHLTVAETLVFTALLRLPNSLKREEKV------LHAEAVINQ 159 (604)
Q Consensus 105 ~~~~~~~~i~yv~Q~~~l-------------------~~~lTv~e~l~f~~~~~~~~~~~~~~~~------~~v~~~l~~ 159 (604)
.....++.+|||+|...+ ++.+||+||+.+...+..... ..+... ....++++.
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHHH
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHHHH
Confidence 543334456666664332 456899999987543221110 000000 112246888
Q ss_pred cCCCcc-ccccccCccCCCcCHHHHHHHHHHHHHhhCCC--eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 046786 160 LGLARC-RNSIIGGRLVRGLSGGERKRISIGQELLINPS--LLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQ 236 (604)
Q Consensus 160 lgL~~~-~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~--illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq 236 (604)
+||.+. .| +.+.+|||||||||+|||||+.+|+ +|||||||+|||+.++..+++.|++++++|.|||++|||
T Consensus 189 ~gL~~~~~~-----~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 189 VGLDYLTLS-----RSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TTCTTCCTT-----CBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCchhhhc-----CCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 999764 45 4566999999999999999999998 999999999999999999999999999889999999999
Q ss_pred CchHHHhhcCeEEEEe-----cCCeEEEecChhhHH
Q 046786 237 PASSLFYMFNKILLLS-----SDGSSLYFGKGEDVI 267 (604)
Q Consensus 237 ~~~~i~~~~d~v~ll~-----~~G~~v~~G~~~~~~ 267 (604)
+. . ...+|++++|. ++|++++.|+++++.
T Consensus 264 ~~-~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 264 ED-T-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp HH-H-HHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HH-H-HhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 75 3 45699999982 589999999998774
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.6e-34 Score=325.53 Aligned_cols=181 Identities=29% Similarity=0.421 Sum_probs=150.2
Q ss_pred ceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEE---------EECCEeCCh------hccccEE
Q 046786 50 MILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHI---------TYNGKQFSA------EVKRRTG 114 (604)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I---------~~~G~~~~~------~~~~~i~ 114 (604)
.+|+|+| ++++||+++|+||||||||||||+|+|+++ |++|++ .++|.++.. ..+..++
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~-----p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~ 179 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI-----PNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPV 179 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC-----CCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCE
T ss_pred eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCC-----CCCCccccccchhhheeCCEehhhhhhhhhhhhcceE
Confidence 4899999 999999999999999999999999999986 567885 456765422 1134588
Q ss_pred EEecCCCCCC---CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHH
Q 046786 115 FVAQNNVFYP---HLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQE 191 (604)
Q Consensus 115 yv~Q~~~l~~---~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~ 191 (604)
+++|.....+ ..||.|++... .. .++++++++.+||.+..| +.+.+|||||||||+||++
T Consensus 180 ~~~q~~~~~~~~~~~tv~e~l~~~------~~------~~~~~~~L~~lgL~~~~~-----~~~~~LSGGekQRvaIAra 242 (607)
T 3bk7_A 180 VKPQYVDLLPKAVKGKVRELLKKV------DE------VGKFEEVVKELELENVLD-----RELHQLSGGELQRVAIAAA 242 (607)
T ss_dssp EECSCGGGGGGTCCSBHHHHHHHT------CC------SSCHHHHHHHTTCTTGGG-----SBGGGCCHHHHHHHHHHHH
T ss_pred EeechhhhchhhccccHHHHhhhh------HH------HHHHHHHHHHcCCCchhC-----CChhhCCHHHHHHHHHHHH
Confidence 9998743322 13899998631 10 135778999999988777 4456999999999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCC
Q 046786 192 LLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDG 255 (604)
Q Consensus 192 L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G 255 (604)
|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. .+..++|++++| +++
T Consensus 243 L~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~-~~~~~adri~vl-~~~ 304 (607)
T 3bk7_A 243 LLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA-VLDYLSDVIHVV-YGE 304 (607)
T ss_dssp HHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEE-ESC
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHHhhCCEEEEE-CCC
Confidence 99999999999999999999999999999999888999999999975 677889999999 654
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.9e-34 Score=321.29 Aligned_cols=181 Identities=28% Similarity=0.412 Sum_probs=150.3
Q ss_pred ceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEE---------EECCEeCCh------hccccEE
Q 046786 50 MILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHI---------TYNGKQFSA------EVKRRTG 114 (604)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I---------~~~G~~~~~------~~~~~i~ 114 (604)
.+|+|+| ++++||+++|+||||||||||||+|+|+++ |++|++ .++|.++.. ..+..++
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~-----p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 109 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI-----PNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPV 109 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-----CCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCE
T ss_pred ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhh
Confidence 4899999 999999999999999999999999999985 567875 456765421 1124588
Q ss_pred EEecCCCCCCC---CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHH
Q 046786 115 FVAQNNVFYPH---LTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQE 191 (604)
Q Consensus 115 yv~Q~~~l~~~---lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~ 191 (604)
+++|+....+. .|+.|++... . ..++++++++.+||.+..+ +.+.+|||||||||+||++
T Consensus 110 ~~~q~~~~~~~~~~~~v~e~~~~~---~---------~~~~~~~~l~~lgl~~~~~-----~~~~~LSgGekQRv~iAra 172 (538)
T 1yqt_A 110 VKPQYVDLIPKAVKGKVIELLKKA---D---------ETGKLEEVVKALELENVLE-----REIQHLSGGELQRVAIAAA 172 (538)
T ss_dssp EECSCGGGSGGGCCSBHHHHHHHH---C---------SSSCHHHHHHHTTCTTTTT-----SBGGGCCHHHHHHHHHHHH
T ss_pred hhhhhhhhcchhhhccHHHHHhhh---h---------HHHHHHHHHHHcCCChhhh-----CChhhCCHHHHHHHHHHHH
Confidence 99997544332 3899987531 0 1135788999999987766 4566999999999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCC
Q 046786 192 LLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDG 255 (604)
Q Consensus 192 L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G 255 (604)
|+.+|++|||||||++||+.++..+++.|++++++|+|||+++|++. .+..++|++++| ++|
T Consensus 173 L~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~-~~~~~~dri~vl-~~~ 234 (538)
T 1yqt_A 173 LLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA-VLDYLSDIIHVV-YGE 234 (538)
T ss_dssp HHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEE-EEE
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE-cCc
Confidence 99999999999999999999999999999999888999999999975 678899999999 654
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=5.6e-33 Score=323.51 Aligned_cols=187 Identities=22% Similarity=0.312 Sum_probs=155.9
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCC-CCCCC
Q 046786 47 EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNN-VFYPH 125 (604)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~-~l~~~ 125 (604)
+++.+|+|+|+++++||+++|+||||||||||||+|+| |+| +|.+.... ..++|++|+. .+++.
T Consensus 446 g~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag-----------G~i--~g~~~~~~--~~~~~v~q~~~~~~~~ 510 (986)
T 2iw3_A 446 GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN-----------GQV--DGFPTQEE--CRTVYVEHDIDGTHSD 510 (986)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH-----------TCS--TTCCCTTT--SCEEETTCCCCCCCTT
T ss_pred CCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC-----------CCc--CCCccccc--eeEEEEcccccccccC
Confidence 45679999999999999999999999999999999995 111 33332221 2378999984 67889
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 046786 126 LTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLA-RCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEP 204 (604)
Q Consensus 126 lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEP 204 (604)
+||.|++.+ ... .. .++++++++.+||. +..+ +.+.+||||||||++||++|+.+|++||||||
T Consensus 511 ltv~e~l~~--~~~---~~-----~~~v~~~L~~lgL~~~~~~-----~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEP 575 (986)
T 2iw3_A 511 TSVLDFVFE--SGV---GT-----KEAIKDKLIEFGFTDEMIA-----MPISALSGGWKMKLALARAVLRNADILLLDEP 575 (986)
T ss_dssp SBHHHHHHT--TCS---SC-----HHHHHHHHHHTTCCHHHHH-----SBGGGCCHHHHHHHHHHHHHHTTCSEEEEEST
T ss_pred CcHHHHHHH--hhc---CH-----HHHHHHHHHHcCCChhhhc-----CCcccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 999999975 111 11 35688999999995 5556 44569999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEE-EecChhhHHH
Q 046786 205 TSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSL-YFGKGEDVIN 268 (604)
Q Consensus 205 tsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v-~~G~~~~~~~ 268 (604)
|+|||+.++..+.+.|++ .|+|||+++|++. .+..++|++++| ++|+++ +.|+++++..
T Consensus 576 Ts~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L-~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 576 TNHLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINY-EGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp TTTCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEE-ETTEEEEEESCHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEE-ECCeeecCCCCHHHHHh
Confidence 999999999999999998 5899999999964 678899999999 899996 7899887754
No 56
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.8e-32 Score=313.72 Aligned_cols=203 Identities=28% Similarity=0.391 Sum_probs=150.3
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHc-----CC-----CCC------CCCccccEEEECCEeCChhc---
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGG-----RL-----SNG------KDTVTQGHITYNGKQFSAEV--- 109 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g-----~~-----~~~------~~~~~~G~I~~~G~~~~~~~--- 109 (604)
+.+|+|||++|++||++||+||||||||||+++|.+ .+ ..+ ...+.+|.|.++|.++....
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~~~i~~~~~~~~~~~~~~ 414 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSN 414 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCSEEEECCSSCSCSSTTCC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccccCceeEeccccCCCCCCcc
Confidence 458999999999999999999999999999987641 00 000 00122567888887653100
Q ss_pred ------------------------------------------cccEEEEecCCCCCC-----------------------
Q 046786 110 ------------------------------------------KRRTGFVAQNNVFYP----------------------- 124 (604)
Q Consensus 110 ------------------------------------------~~~i~yv~Q~~~l~~----------------------- 124 (604)
.+..|+++|+..++|
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (670)
T 3ux8_A 415 PATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTY 494 (670)
T ss_dssp HHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCB
T ss_pred hhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhheee
Confidence 011244444433322
Q ss_pred ---------CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCCCcCHHHHHHHHHHHHHhh
Q 046786 125 ---------HLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARC-RNSIIGGRLVRGLSGGERKRISIGQELLI 194 (604)
Q Consensus 125 ---------~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRvsia~~L~~ 194 (604)
.+||.||+.+... . . ..+++.+.++.+||.+. .+ +++.+|||||||||+|||+|+.
T Consensus 495 ~~~~~~~~~~ltv~e~l~~~~~------~-~--~~~~~~~~l~~~~l~~~~~~-----~~~~~LSgG~~qrv~iAraL~~ 560 (670)
T 3ux8_A 495 KGKNIAEVLDMTVEDALDFFAS------I-P--KIKRKLETLYDVGLGYMKLG-----QPATTLSGGEAQRVKLAAELHR 560 (670)
T ss_dssp TTBCHHHHHTSBHHHHHHHTTT------C-H--HHHHHHHHHHHTTCTTSBTT-----CCGGGCCHHHHHHHHHHHHHHS
T ss_pred cCCCHHHHhhCCHHHHHHHHHH------h-h--hHHHHHHHHHHcCCchhhcc-----CCchhCCHHHHHHHHHHHHHhh
Confidence 4799999987431 1 1 12356678889999642 33 5567999999999999999999
Q ss_pred CC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEe-----cCCeEEEecChhhH
Q 046786 195 NP---SLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLS-----SDGSSLYFGKGEDV 266 (604)
Q Consensus 195 ~p---~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~-----~~G~~v~~G~~~~~ 266 (604)
+| ++|+|||||+|||+.++..+++.|++++++|+|||+++|++. .+ ..+|++++|. ++|++++.|+++++
T Consensus 561 ~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d~i~~l~~~~g~~~G~i~~~g~~~~~ 638 (670)
T 3ux8_A 561 RSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-VI-KTADYIIDLGPEGGDRGGQIVAVGTPEEV 638 (670)
T ss_dssp CCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEEESSSGGGCCEEEEEECHHHH
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HH-HhCCEEEEecCCcCCCCCEEEEecCHHHH
Confidence 87 499999999999999999999999999988999999999985 34 6799999994 48999999999887
Q ss_pred H
Q 046786 267 I 267 (604)
Q Consensus 267 ~ 267 (604)
.
T Consensus 639 ~ 639 (670)
T 3ux8_A 639 A 639 (670)
T ss_dssp H
T ss_pred H
Confidence 4
No 57
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.98 E-value=6e-33 Score=323.22 Aligned_cols=207 Identities=23% Similarity=0.325 Sum_probs=157.0
Q ss_pred hheeeeEEEEEeccccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccc
Q 046786 32 MLKKVNMLVIIKNSDEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKR 111 (604)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~ 111 (604)
+++..|+++.+. ..++.+|+|+|+++++||+++|+||||||||||||+|+|+++ |++|+|.++|. .
T Consensus 671 mL~v~nLs~~Y~--g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~-----P~sG~I~~~~~-------~ 736 (986)
T 2iw3_A 671 IVKVTNMEFQYP--GTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL-----PTSGEVYTHEN-------C 736 (986)
T ss_dssp EEEEEEEEECCT--TCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC-----CSEEEEEECTT-------C
T ss_pred eEEEEeeEEEeC--CCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEEcCc-------c
Confidence 355555543321 113579999999999999999999999999999999999985 67999999863 2
Q ss_pred cEEEEecCCCC----CCCCCHHHHHHHHHHhc------------C-C---------------------------------
Q 046786 112 RTGFVAQNNVF----YPHLTVAETLVFTALLR------------L-P--------------------------------- 141 (604)
Q Consensus 112 ~i~yv~Q~~~l----~~~lTv~e~l~f~~~~~------------~-~--------------------------------- 141 (604)
.+||++|+... ....|++|++.+..... . +
T Consensus 737 ~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~ 816 (986)
T 2iw3_A 737 RIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYE 816 (986)
T ss_dssp CEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEE
T ss_pred ceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccch
Confidence 48999997521 22457888776532100 0 0
Q ss_pred ------------------CCC--------C--------------------------HHHHHHHHHHHHHHcCCCcc--cc
Q 046786 142 ------------------NSL--------K--------------------------REEKVLHAEAVINQLGLARC--RN 167 (604)
Q Consensus 142 ------------------~~~--------~--------------------------~~~~~~~v~~~l~~lgL~~~--~~ 167 (604)
... + +....++++++++.+||.+. .+
T Consensus 817 ~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~ 896 (986)
T 2iw3_A 817 YECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSH 896 (986)
T ss_dssp EEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHH
T ss_pred hhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcC
Confidence 000 0 00013467889999999752 34
Q ss_pred ccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCe
Q 046786 168 SIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNK 247 (604)
Q Consensus 168 ~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~ 247 (604)
+.+++|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++ |.|||++||++. .+..++|+
T Consensus 897 -----~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e-~v~~l~Dr 967 (986)
T 2iw3_A 897 -----SRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAE-FTKNLTEE 967 (986)
T ss_dssp -----SCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHH-HHTTTCCE
T ss_pred -----CCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCHH-HHHHhCCE
Confidence 345699999999999999999999999999999999999999999988765 579999999964 57789999
Q ss_pred EEEEecCCeEEEecC
Q 046786 248 ILLLSSDGSSLYFGK 262 (604)
Q Consensus 248 v~ll~~~G~~v~~G~ 262 (604)
+++| ++|+++..|+
T Consensus 968 VivL-~~G~Iv~~G~ 981 (986)
T 2iw3_A 968 VWAV-KDGRMTPSGH 981 (986)
T ss_dssp EECC-BTTBCCC---
T ss_pred EEEE-ECCEEEEeCC
Confidence 9999 8999987774
No 58
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=3.6e-32 Score=302.44 Aligned_cols=173 Identities=24% Similarity=0.321 Sum_probs=138.0
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEE-----------EECCEeCChh----c--cccEEEEecC--
Q 046786 59 VSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHI-----------TYNGKQFSAE----V--KRRTGFVAQN-- 119 (604)
Q Consensus 59 i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I-----------~~~G~~~~~~----~--~~~i~yv~Q~-- 119 (604)
.++||++||+||||||||||||+|+|+++ |++|+| .++|+++... . ...+..+.|.
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~-----p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEII-----PNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVE 96 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSC-----CCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhh
Confidence 46999999999999999999999999985 568988 6777765321 1 1224444443
Q ss_pred --CCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCC
Q 046786 120 --NVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPS 197 (604)
Q Consensus 120 --~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~ 197 (604)
+.++. .|++|++... . ..++++++++.+|+.+..|+ .+++|||||||||+||+||+.+|+
T Consensus 97 ~~~~~~~-~~v~~~l~~~---~---------~~~~~~~~l~~l~l~~~~~~-----~~~~LSgGe~Qrv~iA~aL~~~p~ 158 (538)
T 3ozx_A 97 YASKFLK-GTVNEILTKI---D---------ERGKKDEVKELLNMTNLWNK-----DANILSGGGLQRLLVAASLLREAD 158 (538)
T ss_dssp GGGTTCC-SBHHHHHHHH---C---------CSSCHHHHHHHTTCGGGTTS-----BGGGCCHHHHHHHHHHHHHHSCCS
T ss_pred hhhhhcc-CcHHHHhhcc---h---------hHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHHHHHHHHcCCC
Confidence 22332 4788866421 0 11246789999999887774 456999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeE
Q 046786 198 LLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSS 257 (604)
Q Consensus 198 illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~ 257 (604)
+|+|||||++||+.++..+.+.|+++++ |+|||+++|++. .+..++|+++++ ++|..
T Consensus 159 illlDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~-~~~~~~d~i~vl-~~~~~ 215 (538)
T 3ozx_A 159 VYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLI-VLDYLTDLIHII-YGESS 215 (538)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHH-HHHHHCSEEEEE-EEETT
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChH-HHHhhCCEEEEe-cCCcc
Confidence 9999999999999999999999999976 999999999975 788999999999 66543
No 59
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.5e-31 Score=299.00 Aligned_cols=188 Identities=23% Similarity=0.332 Sum_probs=144.4
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEE-----------EECCEeCCh----hcccc-
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHI-----------TYNGKQFSA----EVKRR- 112 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I-----------~~~G~~~~~----~~~~~- 112 (604)
...|++++ .+++||+++|+||||||||||||+|+|+++ |++|+| .+.|.++.. ...+.
T Consensus 91 ~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~-----P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 164 (608)
T 3j16_B 91 SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQK-----PNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDI 164 (608)
T ss_dssp SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-----CCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSC
T ss_pred ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCceEecccchhhhhheecChhhhhhhhHHHHHhh
Confidence 34677777 689999999999999999999999999986 568887 334433211 11112
Q ss_pred -EEEEecCCCC------CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHH
Q 046786 113 -TGFVAQNNVF------YPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKR 185 (604)
Q Consensus 113 -i~yv~Q~~~l------~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 185 (604)
..+.+|.... -+..++.+.+.... .. ..++++++++.+||.+..| +.+.+||||||||
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~------~~----~~~~~~~~l~~~gl~~~~~-----~~~~~LSgGe~Qr 229 (608)
T 3j16_B 165 KAIIKPQYVDNIPRAIKGPVQKVGELLKLRM------EK----SPEDVKRYIKILQLENVLK-----RDIEKLSGGELQR 229 (608)
T ss_dssp CCEEECCCTTTHHHHCSSSSSHHHHHHHHHC------CS----CHHHHHHHHHHHTCTGGGG-----SCTTTCCHHHHHH
T ss_pred hhhhchhhhhhhhhhhcchhhHHHHHHhhhh------hh----HHHHHHHHHHHcCCcchhC-----CChHHCCHHHHHH
Confidence 2334443211 11235666554320 11 1246889999999998777 4566999999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEE
Q 046786 186 ISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLY 259 (604)
Q Consensus 186 vsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~ 259 (604)
|+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+..++|++++| ++|..+|
T Consensus 230 v~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~-~~~~~~drv~vl-~~~~~~~ 301 (608)
T 3j16_B 230 FAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLS-VLDYLSDFVCII-YGVPSVY 301 (608)
T ss_dssp HHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHH-HHHHHCSEEEEE-ESCTTTE
T ss_pred HHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-eCCcccc
Confidence 99999999999999999999999999999999999999988999999999975 688899999999 7766544
No 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=1.3e-29 Score=295.02 Aligned_cols=204 Identities=26% Similarity=0.427 Sum_probs=155.9
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHH---------HHHHcCCC-CCCCCcccc------EEEECCEeCChh----
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLL---------TALGGRLS-NGKDTVTQG------HITYNGKQFSAE---- 108 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL---------~~L~g~~~-~~~~~~~~G------~I~~~G~~~~~~---- 108 (604)
...|+|||+++++|++++|+||||||||||+ +.+.+... .+...+.+| .+.+++.++...
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence 4579999999999999999999999999997 44544322 111112233 355555443100
Q ss_pred -----------------------------------------ccccEEEEecCCCCCCC----------------------
Q 046786 109 -----------------------------------------VKRRTGFVAQNNVFYPH---------------------- 125 (604)
Q Consensus 109 -----------------------------------------~~~~i~yv~Q~~~l~~~---------------------- 125 (604)
..+..||+.|+..++|.
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence 01235788888776653
Q ss_pred ----------CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhC
Q 046786 126 ----------LTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLIN 195 (604)
Q Consensus 126 ----------lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~ 195 (604)
+||.|++.|... . ...+++.++|+.+||.... .| +.+.+|||||||||.||++|+.+
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~------~---~~~~~~~~~L~~vGL~~~~---lg-q~~~~LSGGErQRV~LAraL~~~ 823 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKN------I---PSIKRTLQVLHDVGLGYVK---LG-QPATTLSGGEAQRIKLASELRKR 823 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTT------C---HHHHHHHHHHHHTTGGGSB---TT-CCSTTCCHHHHHHHHHHHHHTSC
T ss_pred ccCCHHHHhhCCHHHHHHHHhc------c---hhHHHHHHHHHHcCCchhh---cc-CCccCCCHHHHHHHHHHHHHhhC
Confidence 678888877431 1 1234677899999997532 22 56779999999999999999987
Q ss_pred C---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEe-----cCCeEEEecChhhHH
Q 046786 196 P---SLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLS-----SDGSSLYFGKGEDVI 267 (604)
Q Consensus 196 p---~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~-----~~G~~v~~G~~~~~~ 267 (604)
| ++|||||||+|||+.+...+++.|++++++|.|||+++|++. .+ ..+|++++|. ++|++++.|+++++.
T Consensus 824 p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~-~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 824 DTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD-VI-KNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp CCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 5 799999999999999999999999999988999999999974 44 5699999994 589999999999885
No 61
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.97 E-value=2.9e-30 Score=298.55 Aligned_cols=202 Identities=28% Similarity=0.419 Sum_probs=154.8
Q ss_pred ceeeceEEEEecCeEEEEECCCCCcHHHHHHHHH-cC----C-----CCCCCCcccc------EEEECCEeCChh-----
Q 046786 50 MILKGVSGAVSPGELLAILGPSGCGKTTLLTALG-GR----L-----SNGKDTVTQG------HITYNGKQFSAE----- 108 (604)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~-g~----~-----~~~~~~~~~G------~I~~~G~~~~~~----- 108 (604)
..|+|||++|++||+++|+|+||||||||+++|. |. + .++......| .|.++|.++...
T Consensus 638 ~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~p 717 (972)
T 2r6f_A 638 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNP 717 (972)
T ss_dssp SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCH
T ss_pred cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccc
Confidence 4799999999999999999999999999999853 21 1 1121111123 588898876310
Q ss_pred ---------c---------cccEEEEecCCCCC----------------------C------------------------
Q 046786 109 ---------V---------KRRTGFVAQNNVFY----------------------P------------------------ 124 (604)
Q Consensus 109 ---------~---------~~~i~yv~Q~~~l~----------------------~------------------------ 124 (604)
. .+.+||++|...+. +
T Consensus 718 aty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~ 797 (972)
T 2r6f_A 718 ATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYK 797 (972)
T ss_dssp HHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBT
T ss_pred hhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhcc
Confidence 0 13457877753221 1
Q ss_pred --------CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCcCHHHHHHHHHHHHHhhC
Q 046786 125 --------HLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLAR-CRNSIIGGRLVRGLSGGERKRISIGQELLIN 195 (604)
Q Consensus 125 --------~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRvsia~~L~~~ 195 (604)
.+||.|++.|... . .. .+++.++++.+||.. ..+ +.+.+|||||||||+||++|+.+
T Consensus 798 g~sI~dvl~ltv~e~l~~~~~------~-~~--~~~~~~~L~~~gL~~~~l~-----~~~~~LSGGekQRv~LAraL~~~ 863 (972)
T 2r6f_A 798 GKNIAEVLDMTVEDALDFFAS------I-PK--IKRKLETLYDVGLGYMKLG-----QPATTLSGGEAQRVKLAAELHRR 863 (972)
T ss_dssp TBCHHHHHTSBHHHHHHHTCS------C-HH--HHHHHHHHHHTTCSSSBTT-----CCGGGCCHHHHHHHHHHHHHSSC
T ss_pred CCCHHHhhhcCHHHHHHHHhc------c-hh--HHHHHHHHHHcCCCccccc-----CchhhCCHHHHHHHHHHHHHhcC
Confidence 3678888876321 1 11 234578999999986 444 45669999999999999999986
Q ss_pred C---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEe-----cCCeEEEecChhhHH
Q 046786 196 P---SLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLS-----SDGSSLYFGKGEDVI 267 (604)
Q Consensus 196 p---~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~-----~~G~~v~~G~~~~~~ 267 (604)
| ++|||||||+|||+.+...+++.|++++++|.|||+++|++. .+ ..+|++++|. ++|++++.|+++++.
T Consensus 864 p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~-~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 864 SNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-VI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp CCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HH-HhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 5 999999999999999999999999999988999999999975 34 6899999994 379999999998775
No 62
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.96 E-value=1.1e-29 Score=293.24 Aligned_cols=202 Identities=27% Similarity=0.415 Sum_probs=151.4
Q ss_pred ceeeceEEEEecCeEEEEECCCCCcHHHHHHH-HHcCCC-------C--CCC-----------Ccccc-------EEEEC
Q 046786 50 MILKGVSGAVSPGELLAILGPSGCGKTTLLTA-LGGRLS-------N--GKD-----------TVTQG-------HITYN 101 (604)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~-L~g~~~-------~--~~~-----------~~~~G-------~I~~~ 101 (604)
..|+|||++|++||+++|+|+||||||||++. |+|.++ + +.. .+.+| .|.++
T Consensus 511 ~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vd 590 (842)
T 2vf7_A 511 NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVD 590 (842)
T ss_dssp TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEEC
T ss_pred cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEEC
Confidence 36999999999999999999999999999996 775431 1 100 12467 78999
Q ss_pred CEeCChh--------------cc---------ccEEEEec----------------------CCCCCC------------
Q 046786 102 GKQFSAE--------------VK---------RRTGFVAQ----------------------NNVFYP------------ 124 (604)
Q Consensus 102 G~~~~~~--------------~~---------~~i~yv~Q----------------------~~~l~~------------ 124 (604)
|.++... .+ +..||.++ +..+++
T Consensus 591 q~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~ 670 (842)
T 2vf7_A 591 QKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGT 670 (842)
T ss_dssp SSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTC
T ss_pred CeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCc
Confidence 8876310 01 11222222 222222
Q ss_pred --------------------CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCCCcCHHHH
Q 046786 125 --------------------HLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARC-RNSIIGGRLVRGLSGGER 183 (604)
Q Consensus 125 --------------------~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGer 183 (604)
.+|+.|++.|.. . .. ..+++.++++.+||... .+ +.+..||||||
T Consensus 671 r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~------~-~~--~~~~~~~~L~~~gL~~~~l~-----~~~~~LSGGek 736 (842)
T 2vf7_A 671 RYNAETLEVEYRGKNIADVLALTVDEAHDFFA------D-ES--AIFRALDTLREVGLGYLRLG-----QPATELSGGEA 736 (842)
T ss_dssp CBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTT------T-SH--HHHHHHHHHHHTTCTTSBTT-----CCGGGCCHHHH
T ss_pred ccchhhHhhhhcCCCHHHHHhccHHHHHHHhh------c-ch--HHHHHHHHHHHcCCCccccc-----CCcccCCHHHH
Confidence 245555554421 1 11 23467899999999863 33 55679999999
Q ss_pred HHHHHHHHHhhC---CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEe-----cCC
Q 046786 184 KRISIGQELLIN---PSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLS-----SDG 255 (604)
Q Consensus 184 qRvsia~~L~~~---p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~-----~~G 255 (604)
|||.||++|+.+ |++|||||||+|||+.+...+.+.|++++++|.|||+++|++. .+ ..+|++++|. ++|
T Consensus 737 QRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~-~i-~~aDrii~L~p~~g~~~G 814 (842)
T 2vf7_A 737 QRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQ-VV-AASDWVLDIGPGAGEDGG 814 (842)
T ss_dssp HHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEECSSSGGGCC
T ss_pred HHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HH-HhCCEEEEECCCCCCCCC
Confidence 999999999996 7999999999999999999999999999988999999999975 45 7899999993 489
Q ss_pred eEEEecChhhHH
Q 046786 256 SSLYFGKGEDVI 267 (604)
Q Consensus 256 ~~v~~G~~~~~~ 267 (604)
++++.|+++++.
T Consensus 815 ~Iv~~g~~~el~ 826 (842)
T 2vf7_A 815 RLVAQGTPAEVA 826 (842)
T ss_dssp SEEEEECHHHHT
T ss_pred EEEEEcCHHHHH
Confidence 999999998764
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.96 E-value=1.2e-29 Score=294.53 Aligned_cols=201 Identities=25% Similarity=0.387 Sum_probs=152.1
Q ss_pred ceeeceEEEEecCeEEEEECCCCCcHHHHHHHHH-c----CCCCCCCCcccc-------------EEEECCEeCChh---
Q 046786 50 MILKGVSGAVSPGELLAILGPSGCGKTTLLTALG-G----RLSNGKDTVTQG-------------HITYNGKQFSAE--- 108 (604)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~-g----~~~~~~~~~~~G-------------~I~~~G~~~~~~--- 108 (604)
..|+|||++|++||+++|+|+||||||||+++|. | .+.+. .+..| .|.++|.++...
T Consensus 656 ~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~--~~~~G~~~~i~G~~~~~~~i~idq~pig~~~rs 733 (993)
T 2ygr_A 656 HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGA--RQVPGRHTRVTGLDYLDKLVRIDQSPIGRTPRS 733 (993)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCC--CCCCCSEEEECCCTTCSEEECCCCSCSCSSTTC
T ss_pred ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCC--cCCCCceeeecCccccceEEEecCcccccCccc
Confidence 3699999999999999999999999999999853 2 22110 01123 355666655210
Q ss_pred --------------------ccccEEEEecCCCC----------------------CC----------------------
Q 046786 109 --------------------VKRRTGFVAQNNVF----------------------YP---------------------- 124 (604)
Q Consensus 109 --------------------~~~~i~yv~Q~~~l----------------------~~---------------------- 124 (604)
..+..||++|...+ ++
T Consensus 734 ~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~r~~~e~l~v~ 813 (993)
T 2ygr_A 734 NPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVH 813 (993)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTTTTCSBCGGGGGCC
T ss_pred chhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehhccccccchhhhhhh
Confidence 01345777775322 11
Q ss_pred ----------CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCcCHHHHHHHHHHHHHh
Q 046786 125 ----------HLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLAR-CRNSIIGGRLVRGLSGGERKRISIGQELL 193 (604)
Q Consensus 125 ----------~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRvsia~~L~ 193 (604)
.+||.|++.|... . .. .+++.++++.+||.. ..+ +.+..|||||||||+||++|+
T Consensus 814 ~~g~si~dvl~ltv~e~l~~~~~------~-~~--~~~~~~~L~~lgL~~~~l~-----~~~~~LSGGekQRv~LAraL~ 879 (993)
T 2ygr_A 814 YKGKTVSEVLDMSIEEAAEFFEP------I-AG--VHRYLRTLVDVGLGYVRLG-----QPAPTLSGGEAQRVKLASELQ 879 (993)
T ss_dssp BTTBCHHHHHSSBHHHHHHHSTT------C-HH--HHHHHHHHHHTTGGGSBTT-----CCGGGSCHHHHHHHHHHHHHS
T ss_pred ccCCCHHHHhhccHHHHHHHhhc------c-hH--HHHHHHHHHHcCCCccccc-----CccccCCHHHHHHHHHHHHHH
Confidence 3577787776321 1 11 234578999999976 344 456799999999999999999
Q ss_pred hCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEe-----cCCeEEEecChhh
Q 046786 194 INP---SLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLS-----SDGSSLYFGKGED 265 (604)
Q Consensus 194 ~~p---~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~-----~~G~~v~~G~~~~ 265 (604)
.+| ++|||||||+|||+.+...+++.|++++++|.|||+++|++. .+ ..+|++++|. ++|++++.|++++
T Consensus 880 ~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~-~i-~~aDrIivL~p~gg~~~G~Iv~~G~~~e 957 (993)
T 2ygr_A 880 KRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLD-VI-KTSDWIIDLGPEGGAGGGTVVAQGTPED 957 (993)
T ss_dssp SCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEEESSSTTSCSEEEEEECHHH
T ss_pred hCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HH-HhCCEEEEECCCcCCCCCEEEEecCHHH
Confidence 865 999999999999999999999999999988999999999975 34 6899999994 4799999999988
Q ss_pred HHH
Q 046786 266 VIN 268 (604)
Q Consensus 266 ~~~ 268 (604)
+..
T Consensus 958 l~~ 960 (993)
T 2ygr_A 958 VAA 960 (993)
T ss_dssp HHH
T ss_pred HHh
Confidence 754
No 64
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.8e-31 Score=289.89 Aligned_cols=185 Identities=14% Similarity=0.083 Sum_probs=148.4
Q ss_pred eceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCcccc-E-EEECCEeCChhccccEEEEecCCC---CCCCCC
Q 046786 53 KGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQG-H-ITYNGKQFSAEVKRRTGFVAQNNV---FYPHLT 127 (604)
Q Consensus 53 ~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G-~-I~~~G~~~~~~~~~~i~yv~Q~~~---l~~~lT 127 (604)
.++|+++++|++++|+||||||||||+|+|+|+.+ |++| + |.++|. .++.++|+||+.. +.+.+|
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~-----p~~G~~pI~vdg~-----~~~~i~~vpq~~~l~~~~~~~t 198 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL-----KFNAYQPLYINLD-----PQQPIFTVPGCISATPISDILD 198 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH-----HHHCCCCEEEECC-----TTSCSSSCSSCCEEEECCSCCC
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc-----ccCCceeEEEcCC-----ccCCeeeeccchhhcccccccc
Confidence 47999999999999999999999999999999985 6799 9 999983 3677999999984 455679
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHH--HhhCCCe----EEE
Q 046786 128 VAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQE--LLINPSL----LFL 201 (604)
Q Consensus 128 v~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~--L~~~p~i----llL 201 (604)
|+||+ |+....... . ..+++.++++.+|+.+..+ +.+|||||||||+||++ |+.+|++ |||
T Consensus 199 v~eni-~~~~~~~~~--~---~~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlL 265 (460)
T 2npi_A 199 AQLPT-WGQSLTSGA--T---LLHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIV 265 (460)
T ss_dssp TTCTT-CSCBCBSSC--C---SSCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEE
T ss_pred hhhhh-cccccccCc--c---hHHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEE
Confidence 99998 653321111 0 1124566788889877654 45899999999999999 9999999 999
Q ss_pred eC-CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc--h---HHHhhcCe-----EEEEec-CCeEEEecChhhH
Q 046786 202 DE-PTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPA--S---SLFYMFNK-----ILLLSS-DGSSLYFGKGEDV 266 (604)
Q Consensus 202 DE-PtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~--~---~i~~~~d~-----v~ll~~-~G~~v~~G~~~~~ 266 (604)
|| ||+|||+. ...+.+.+++ .|+|+|+++|+.. . .+..++|+ +++| + +|+++ .|+++++
T Consensus 266 DEpPts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l-~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 266 DTPSISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFI-PKLDGVS-AVDDVYK 336 (460)
T ss_dssp ECCCGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEE-CCCTTCC-CCCHHHH
T ss_pred eCCcccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEE-eCCCcEE-ECCHHHH
Confidence 99 99999999 4445554444 3789999999976 1 45578999 9999 7 99999 9988655
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.95 E-value=1.5e-27 Score=257.47 Aligned_cols=208 Identities=22% Similarity=0.266 Sum_probs=147.7
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC--------------------CC-------------Cccc
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNG--------------------KD-------------TVTQ 95 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~--------------------~~-------------~~~~ 95 (604)
..+++++|+++++| +++|+|||||||||||++|+++.... .. .+.+
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 35799999999999 99999999999999999998766410 00 1347
Q ss_pred cEEEECCEeCCh----hc-cccEEEEecCCCCCCCCCHHHHHHHHHHhc-----------------------CCCCCC--
Q 046786 96 GHITYNGKQFSA----EV-KRRTGFVAQNNVFYPHLTVAETLVFTALLR-----------------------LPNSLK-- 145 (604)
Q Consensus 96 G~I~~~G~~~~~----~~-~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~-----------------------~~~~~~-- 145 (604)
|++.+||++++. .. +..+++++|++.++.. +..+...|.-... +.....
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~ 205 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSK 205 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 899999999864 22 3348999999876543 5554444421110 000000
Q ss_pred --------------------------------HHHHHHHHHHHHHHcCCCccc----------------cc---cccC--
Q 046786 146 --------------------------------REEKVLHAEAVINQLGLARCR----------------NS---IIGG-- 172 (604)
Q Consensus 146 --------------------------------~~~~~~~v~~~l~~lgL~~~~----------------~~---~vg~-- 172 (604)
.+.-.+.+.+.++.+++.+.. +. .+..
T Consensus 206 ~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 285 (415)
T 4aby_A 206 HPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANP 285 (415)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSS
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCC
Confidence 000113455566677765410 00 1110
Q ss_pred ----ccCCC-cCHHHHHHHHHHHHHhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhc
Q 046786 173 ----RLVRG-LSGGERKRISIGQELLINP--SLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMF 245 (604)
Q Consensus 173 ----~~~~~-LSgGerqRvsia~~L~~~p--~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~ 245 (604)
+.++. ||||||||++||++|+.+| ++|||||||+|||+.++..+.+.|++++ +|.|||++||+| ++...+
T Consensus 286 ~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~ 362 (415)
T 4aby_A 286 GEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARA 362 (415)
T ss_dssp SCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTC
T ss_pred CCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhc
Confidence 22223 6999999999999999999 9999999999999999999999999998 589999999997 356789
Q ss_pred CeEEEEe---cCCeEEEec
Q 046786 246 NKILLLS---SDGSSLYFG 261 (604)
Q Consensus 246 d~v~ll~---~~G~~v~~G 261 (604)
|++++|. .+|+++...
T Consensus 363 d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 363 HHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp SEEEEEEEEEETTEEEEEE
T ss_pred CeEEEEEEeccCCceEEEE
Confidence 9999982 268876553
No 66
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.93 E-value=3.5e-29 Score=245.84 Aligned_cols=142 Identities=18% Similarity=0.282 Sum_probs=103.2
Q ss_pred ccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCC---hhccccEEEEecCCCC
Q 046786 46 DEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS---AEVKRRTGFVAQNNVF 122 (604)
Q Consensus 46 ~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~---~~~~~~i~yv~Q~~~l 122 (604)
.+++.+|+|+ ++||+++|+||||||||||||+|+|+ + |++|+|.. .++. ...++.+|||+|++
T Consensus 10 ~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~-----p~~G~I~~--~~~~~~~~~~~~~ig~v~q~~-- 75 (208)
T 3b85_A 10 LGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A-----LQSKQVSR--IILTRPAVEAGEKLGFLPGTL-- 75 (208)
T ss_dssp HHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H-----HHTTSCSE--EEEEECSCCTTCCCCSSCC----
T ss_pred HhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C-----CcCCeeee--EEecCCchhhhcceEEecCCH--
Confidence 3456799996 89999999999999999999999999 7 56888842 2221 13466799999976
Q ss_pred CCCCCHHHHH-HHHH----HhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCC
Q 046786 123 YPHLTVAETL-VFTA----LLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPS 197 (604)
Q Consensus 123 ~~~lTv~e~l-~f~~----~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~ 197 (604)
+||+ .+.. .+. .... .++++++++. |+ ||||||+|||+|+.+|+
T Consensus 76 ------~enl~~~~~~~~~~~~--~~~~----~~~~~~~l~~-gl------------------Gq~qrv~lAraL~~~p~ 124 (208)
T 3b85_A 76 ------NEKIDPYLRPLHDALR--DMVE----PEVIPKLMEA-GI------------------VEVAPLAYMRGRTLNDA 124 (208)
T ss_dssp ----------CTTTHHHHHHHT--TTSC----TTHHHHHHHT-TS------------------EEEEEGGGGTTCCBCSE
T ss_pred ------HHHHHHHHHHHHHHHH--Hhcc----HHHHHHHHHh-CC------------------chHHHHHHHHHHhcCCC
Confidence 4444 2211 111 0001 1235555553 32 99999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 046786 198 LLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPA 238 (604)
Q Consensus 198 illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~ 238 (604)
+|||||||+| ++..+.+.|+++ ++|+||| +||++.
T Consensus 125 lllLDEPts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 125 FVILDEAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp EEEECSGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred EEEEeCCccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 9999999999 888999999998 6789999 999975
No 67
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.92 E-value=4.9e-25 Score=234.42 Aligned_cols=84 Identities=32% Similarity=0.439 Sum_probs=77.5
Q ss_pred ccCCCcCHHHHHHHHHHHHHh------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcC
Q 046786 173 RLVRGLSGGERKRISIGQELL------INPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFN 246 (604)
Q Consensus 173 ~~~~~LSgGerqRvsia~~L~------~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d 246 (604)
+.+.+|||||||||+||++|+ .+|++|||||||+|||+.+...+++.|+++++.|+|||+++|++. ....+|
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d 352 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFD 352 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCS
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCC
Confidence 567799999999999999999 699999999999999999999999999999888999999999975 367899
Q ss_pred eEEEEecCCeEEE
Q 046786 247 KILLLSSDGSSLY 259 (604)
Q Consensus 247 ~v~ll~~~G~~v~ 259 (604)
++++| ++|+++.
T Consensus 353 ~~~~l-~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRI-TGGVVVN 364 (365)
T ss_dssp CEEEE-ETTEEC-
T ss_pred EEEEE-ECCEEEe
Confidence 99999 8999874
No 68
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.92 E-value=8e-25 Score=228.89 Aligned_cols=209 Identities=18% Similarity=0.222 Sum_probs=127.6
Q ss_pred eceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCC-----------------CC-------------------------
Q 046786 53 KGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSN-----------------GK------------------------- 90 (604)
Q Consensus 53 ~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~-----------------~~------------------------- 90 (604)
+++++.+.+| +++|+|||||||||||++|...+.. +.
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 4678899999 9999999999999999999954310 00
Q ss_pred ---CCccccEEEECCEeCCh----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcC------CCCCC-H---HHHHHH-
Q 046786 91 ---DTVTQGHITYNGKQFSA----EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRL------PNSLK-R---EEKVLH- 152 (604)
Q Consensus 91 ---~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~------~~~~~-~---~~~~~~- 152 (604)
..+.+|.+.+||++... ...+.+++.+|+..+.+.-++.+++.....-+. +.... . +...+.
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 01235789999988752 223346655555443322234443322111000 00000 0 000001
Q ss_pred --------------------HHHHHHHcCCCcc-ccccccCccCCCcCHHHHHHHHHHHHHh----hCCCeEEEeCCCCC
Q 046786 153 --------------------AEAVINQLGLARC-RNSIIGGRLVRGLSGGERKRISIGQELL----INPSLLFLDEPTSG 207 (604)
Q Consensus 153 --------------------v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRvsia~~L~----~~p~illLDEPtsg 207 (604)
+.+.++. |+.-. ......+..+..||||||||++||++|+ .+|++++|||||++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~ 253 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDA-GFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSP 253 (322)
T ss_dssp HHHHHHHHTSCEEEC---------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSS
T ss_pred HHHHHHhcCCceEEEEeeccccccccC-CeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCC
Confidence 1112221 22100 0000012346799999999999999997 57899999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeE--EEEecCCe-EEEecChhhHH
Q 046786 208 LDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKI--LLLSSDGS-SLYFGKGEDVI 267 (604)
Q Consensus 208 LD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v--~ll~~~G~-~v~~G~~~~~~ 267 (604)
||+.....+.+.|++++ +|.+||+++|++. +...+|++ +++ .+|+ .+.....++..
T Consensus 254 LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~~v~~-~~g~s~~~~~~~~~~~ 312 (322)
T 1e69_A 254 LDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHGVTM-VNGVSAIVPVEVEKIL 312 (322)
T ss_dssp CCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEEEEE-SSSCEEEEECCC----
T ss_pred CCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEEEEEE-eCCEEEEEEEEcchhh
Confidence 99999999999999985 4899999999963 57889986 777 5664 55555555543
No 69
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.90 E-value=3.7e-27 Score=253.28 Aligned_cols=170 Identities=13% Similarity=0.204 Sum_probs=136.2
Q ss_pred cceeeceEEEEecCe--------------------EEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChh
Q 046786 49 KMILKGVSGAVSPGE--------------------LLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAE 108 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge--------------------~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~ 108 (604)
+.+|+|||+++++|+ ++||+||||||||||+|+|+|+.+ |++|+|.++|.+.+
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~-----p~~GsI~~~g~~~t-- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN-----EEEGAAKTGVVEVT-- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT-----TSTTSCCCCC------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC-----ccCceEEECCeecc--
Confidence 568999999999999 999999999999999999999985 57999999997653
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHH--HHHHH
Q 046786 109 VKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGG--ERKRI 186 (604)
Q Consensus 109 ~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG--erqRv 186 (604)
+ .+|++|++ .++.+|+.|++.++. + +.+++++++.+++.+... .+ .+||| ||||+
T Consensus 109 -~--~~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~~------~~-~lS~G~~~kqrv 165 (413)
T 1tq4_A 109 -M--ERHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYDF------FI-IISATRFKKNDI 165 (413)
T ss_dssp -C--CCEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCSE------EE-EEESSCCCHHHH
T ss_pred -e--eEEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccCC------eE-EeCCCCccHHHH
Confidence 2 27899985 577889999875531 1 124678899999876422 12 29999 99999
Q ss_pred HHHHHHhh----------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-----hCC----CEEEEEecCCch-HHHhhcC
Q 046786 187 SIGQELLI----------NPSLLFLDEPTSGLDSTMAKKILVSLSKLA-----EGG----RTILMTIHQPAS-SLFYMFN 246 (604)
Q Consensus 187 sia~~L~~----------~p~illLDEPtsgLD~~~~~~i~~~l~~la-----~~g----~tvi~~~Hq~~~-~i~~~~d 246 (604)
.||++|+. +|++++|||||+|||+.++.++++.|+++. +.| .+|++++|+... .+.+++|
T Consensus 166 ~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d 245 (413)
T 1tq4_A 166 DIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMD 245 (413)
T ss_dssp HHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHH
T ss_pred HHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHH
Confidence 99999999 999999999999999999999999999985 333 678899998653 2555555
Q ss_pred eE
Q 046786 247 KI 248 (604)
Q Consensus 247 ~v 248 (604)
++
T Consensus 246 ~I 247 (413)
T 1tq4_A 246 KL 247 (413)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 70
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.90 E-value=2.8e-25 Score=211.12 Aligned_cols=143 Identities=13% Similarity=0.156 Sum_probs=100.9
Q ss_pred ceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCC-CCCHHHHH
Q 046786 54 GVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYP-HLTVAETL 132 (604)
Q Consensus 54 ~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~-~lTv~e~l 132 (604)
|||+++++||+++|+||||||||||+|++.+-. ..+++ +.. .|+++|+..-.. .-++.+.+
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~-----------~~~~~----d~~---~g~~~~~~~~~~~~~~~~~~~ 62 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPT-----------EVISS----DFC---RGLMSDDENDQTVTGAAFDVL 62 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGG-----------GEEEH----HHH---HHHHCSSTTCGGGHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCC-----------eEEcc----HHH---HHHhcCcccchhhHHHHHHHH
Confidence 689999999999999999999999999965311 11111 111 256777642100 00111111
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH-
Q 046786 133 VFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDST- 211 (604)
Q Consensus 133 ~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~- 211 (604)
. ... +.....|.....+ .....|||||||++||++++.+|++++|||||+|||+.
T Consensus 63 ~-----------------~~~-~~~~~~g~~~~~~------~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~ 118 (171)
T 4gp7_A 63 H-----------------YIV-SKRLQLGKLTVVD------ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERN 118 (171)
T ss_dssp H-----------------HHH-HHHHHTTCCEEEE------SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHH
T ss_pred H-----------------HHH-HHHHhCCCeEEEE------CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHH
Confidence 1 111 1222345443333 12356999999999999999999999999999999999
Q ss_pred ---------------HHHHHHHHHHHHHhCCCEEEEEecCCc
Q 046786 212 ---------------MAKKILVSLSKLAEGGRTILMTIHQPA 238 (604)
Q Consensus 212 ---------------~~~~i~~~l~~la~~g~tvi~~~Hq~~ 238 (604)
....+.+.|++++++|.|+|+++|++.
T Consensus 119 ~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 119 KNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp HTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred hcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 668899999999877999999999975
No 71
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.89 E-value=1.5e-27 Score=233.58 Aligned_cols=182 Identities=15% Similarity=0.161 Sum_probs=122.2
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCC
Q 046786 47 EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHL 126 (604)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~l 126 (604)
+.+.+++| .++++||+++|+||||||||||+|+|+|+++. . .+.+.+.+.+.....++.++|++|++.+++.+
T Consensus 7 ~~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~--i---~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 79 (207)
T 1znw_A 7 DTKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN--L---HFSVSATTRAPRPGEVDGVDYHFIDPTRFQQL 79 (207)
T ss_dssp --------------CCCEEEEECSTTSSHHHHHHHHHHHSTT--C---EECCCEESSCCCTTCCBTTTBEECCHHHHHHH
T ss_pred CCCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc--e---EEcccccccCCcccccCCCeeEecCHHHHHHH
Confidence 34567888 69999999999999999999999999998741 1 22222223222223356799999998888888
Q ss_pred CHHHHHHHHHHhcC---CCCCCHHHHHHHHHHH------HHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCC
Q 046786 127 TVAETLVFTALLRL---PNSLKREEKVLHAEAV------INQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPS 197 (604)
Q Consensus 127 Tv~e~l~f~~~~~~---~~~~~~~~~~~~v~~~------l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~ 197 (604)
|+.|++.+...... ....++++.++++++. ++.+|+.+.++ +.++.|| +|+.+|+
T Consensus 80 ~~~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~lS-----------~l~~~p~ 143 (207)
T 1znw_A 80 IDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKK-----TMPEAVT-----------VFLAPPS 143 (207)
T ss_dssp HHTTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHH-----HCTTSEE-----------EEEECSC
T ss_pred HhcCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHH-----hcCCcEE-----------EEEECCC
Confidence 88777632110000 0112344445556655 55666655444 3345677 8999999
Q ss_pred eEEEeCCCCCC----CHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEe
Q 046786 198 LLFLDEPTSGL----DSTMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLS 252 (604)
Q Consensus 198 illLDEPtsgL----D~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~ 252 (604)
+++|||||+|+ |+..+..+.+.++++++ .|.|+|+++|++. ++..++|+++++.
T Consensus 144 ~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~ 202 (207)
T 1znw_A 144 WQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGT 202 (207)
T ss_dssp HHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC--
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhc
Confidence 99999999998 78899999999999975 5899999999975 7889999999983
No 72
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.88 E-value=8e-24 Score=202.71 Aligned_cols=145 Identities=18% Similarity=0.172 Sum_probs=100.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeC---C-hhccccEEEEecCCCCCCCCCHHHHHHHHHHhc
Q 046786 64 LLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQF---S-AEVKRRTGFVAQNNVFYPHLTVAETLVFTALLR 139 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~---~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~ 139 (604)
.++|+||||||||||+|+|+|.+. |.++|.+. . ...++.+||++|+. ++.+++ + + +
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~----------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~--~ 61 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG----------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-S--S 61 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG----------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-E--E
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC----------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-H--h
Confidence 589999999999999999999863 22344332 1 13456899999975 222322 1 0 1
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHH-----HhhCCCeEEEeC--CCCCCCHHH
Q 046786 140 LPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQE-----LLINPSLLFLDE--PTSGLDSTM 212 (604)
Q Consensus 140 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~-----L~~~p~illLDE--PtsgLD~~~ 212 (604)
. +... +..+ ++++..||||||||++||++ |+.+|++++||| ||++||+..
T Consensus 62 ~--------------------~~~~--~~~~-~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~ 118 (178)
T 1ye8_A 62 K--------------------FFTS--KKLV-GSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKF 118 (178)
T ss_dssp T--------------------TCCC--SSEE-TTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHH
T ss_pred h--------------------cCCc--cccc-cccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHH
Confidence 0 0000 0112 24566899999999999996 999999999999 999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEec--CCchHHHhhcCeEEEEecCCeEEE
Q 046786 213 AKKILVSLSKLAEGGRTILMTIH--QPASSLFYMFNKILLLSSDGSSLY 259 (604)
Q Consensus 213 ~~~i~~~l~~la~~g~tvi~~~H--q~~~~i~~~~d~v~ll~~~G~~v~ 259 (604)
...+.+.+++ .+.|+|+++| +....+..++|+ .+|+++.
T Consensus 119 ~~~l~~~l~~---~~~~~i~~~H~~h~~~~~~~i~~r-----~~~~i~~ 159 (178)
T 1ye8_A 119 RDLVRQIMHD---PNVNVVATIPIRDVHPLVKEIRRL-----PGAVLIE 159 (178)
T ss_dssp HHHHHHHHTC---TTSEEEEECCSSCCSHHHHHHHTC-----TTCEEEE
T ss_pred HHHHHHHHhc---CCCeEEEEEccCCCchHHHHHHhc-----CCcEEEE
Confidence 9999888866 4777888886 224466677775 3456554
No 73
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.87 E-value=6.4e-24 Score=219.95 Aligned_cols=173 Identities=17% Similarity=0.140 Sum_probs=133.1
Q ss_pred eeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--------hc--cccEEEEecCCC
Q 046786 52 LKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--------EV--KRRTGFVAQNNV 121 (604)
Q Consensus 52 L~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--------~~--~~~i~yv~Q~~~ 121 (604)
++++|+++++|++++|+||||||||||++.|+|+++ |++|+|.++|.+... .+ ++.++|++|++.
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~-----~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~ 164 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK-----NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD 164 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH-----HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCC
Confidence 357899999999999999999999999999999875 568999999988742 12 346999999988
Q ss_pred -CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCC--e
Q 046786 122 -FYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPS--L 198 (604)
Q Consensus 122 -l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~--i 198 (604)
++|.+|++|++.++.... .. ..+++.+|+.+..+.. +.+|| |||++||++|+.+|+ +
T Consensus 165 ~~~~~~~v~e~l~~~~~~~----~d--------~~lldt~gl~~~~~~~-----~~eLS---kqr~~iaral~~~P~e~l 224 (302)
T 3b9q_A 165 KAKAATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSL-----MEELI---ACKKAVGKIVSGAPNEIL 224 (302)
T ss_dssp CCCHHHHHHHHHHHHHHTT----CS--------EEEECCCCCSSCCHHH-----HHHHH---HHHHHHHTTSTTCCSEEE
T ss_pred ccCHHHHHHHHHHHHHHcC----Cc--------chHHhcCCCCcchhHH-----HHHHH---HHHHHHHHhhccCCCeeE
Confidence 888899999998864211 00 1356777887766543 45899 999999999999999 9
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCc--------hHHHhhcCeEEEEecCCeE
Q 046786 199 LFLDEPTSGLDSTMAKKILVSLSKLAE-GGRTILMTIHQPA--------SSLFYMFNKILLLSSDGSS 257 (604)
Q Consensus 199 llLDEPtsgLD~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~--------~~i~~~~d~v~ll~~~G~~ 257 (604)
|+|| ||+|||+... ++++.+ .|.|+|++||... +......+.+..+ ..|+.
T Consensus 225 LvLD-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i-~~Ge~ 284 (302)
T 3b9q_A 225 LVLD-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFI-GVGEA 284 (302)
T ss_dssp EEEE-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEE-ECSSS
T ss_pred EEEe-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEE-eCCCC
Confidence 9999 9999998754 355654 5899999999422 1233445677777 66754
No 74
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.86 E-value=9e-26 Score=233.27 Aligned_cols=158 Identities=18% Similarity=0.220 Sum_probs=122.8
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCH
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTV 128 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv 128 (604)
+.+|+|+|+++++|++++|+||||||||||+++|+|++ +|+| ++|++|++.+++. |+
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~--------~G~I--------------~~~v~q~~~lf~~-ti 169 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL--------GGSV--------------LSFANHKSHFWLA-SL 169 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH--------TCEE--------------ECGGGTTSGGGGG-GG
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc--------CceE--------------EEEecCccccccc-cH
Confidence 56999999999999999999999999999999999986 5887 3567888877764 77
Q ss_pred HH-HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 046786 129 AE-TLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSG 207 (604)
Q Consensus 129 ~e-~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsg 207 (604)
+| |+.+.. ..+. .+.+.++.+ |.+..| ...|||||||| ||+|+.+|+||| ||+
T Consensus 170 ~~~ni~~~~------~~~~-----~~~~~i~~~-L~~gld-------g~~LSgGqkQR---ARAll~~p~iLl----Ts~ 223 (305)
T 2v9p_A 170 ADTRAALVD------DATH-----ACWRYFDTY-LRNALD-------GYPVSIDRKHK---AAVQIKAPPLLV----TSN 223 (305)
T ss_dssp TTCSCEEEE------EECH-----HHHHHHHHT-TTGGGG-------TCCEECCCSSC---CCCEECCCCEEE----EES
T ss_pred HHHhhccCc------cccH-----HHHHHHHHH-hHccCC-------ccCcCHHHHHH---HHHHhCCCCEEE----ECC
Confidence 76 765521 1121 344556654 444333 35899999999 999999999999 999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHHHHHHhC
Q 046786 208 LDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVINYFAGI 273 (604)
Q Consensus 208 LD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~~~f~~~ 273 (604)
||+.+...+.. .+|++. ....+|++ +| ++|++++.|+++++..+|.++
T Consensus 224 LD~~~~~~i~~--------------ltH~~~--~~~~aD~i-vl-~~G~iv~~g~~~el~~~y~~l 271 (305)
T 2v9p_A 224 IDVQAEDRYLY--------------LHSRVQ--TFRFEQPC-TD-ESGEQPFNITDADWKSFFVRL 271 (305)
T ss_dssp SCSTTCGGGGG--------------GTTTEE--EEECCCCC-CC-C---CCCCCCHHHHHHHHHHS
T ss_pred CCHHHHHHHHH--------------HhCCHH--HHHhCCEE-EE-eCCEEEEeCCHHHHHHHHHHH
Confidence 99999888752 188875 35789999 98 899999999999986666653
No 75
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.86 E-value=4.7e-24 Score=217.59 Aligned_cols=146 Identities=20% Similarity=0.168 Sum_probs=97.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPN 142 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~ 142 (604)
.++|+||||||||||+|+|+|... |++|+|.++|+++.. ..++.++|++|++.+++.+||.||+.|+.....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~-----~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~-- 76 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV-----SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN-- 76 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-----------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC-----CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc--
Confidence 479999999999999999999875 579999999998754 345679999999999999999999988753321
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 046786 143 SLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSK 222 (604)
Q Consensus 143 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~ 222 (604)
... .+.+.+.++ .+..+. ...+||||||||+++||+++. ++++|||++|||+.. .+.++.
T Consensus 77 ~~~----~~~i~~~~~----~~~~~~-----~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~ 136 (270)
T 3sop_A 77 ENC----WEPIEKYIN----EQYEKF-----LKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKH 136 (270)
T ss_dssp TTC----SHHHHHHHH----HHHHHH-----HHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHH
T ss_pred HHH----HHHHHHHHH----HHHHhh-----hHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHH
Confidence 111 112333333 223332 345899999999999999876 999999999999987 566677
Q ss_pred HHhCCCEEEEEecCC
Q 046786 223 LAEGGRTILMTIHQP 237 (604)
Q Consensus 223 la~~g~tvi~~~Hq~ 237 (604)
+++. .+||+++|..
T Consensus 137 L~~~-~~vI~Vi~K~ 150 (270)
T 3sop_A 137 LSKV-VNIIPVIAKA 150 (270)
T ss_dssp HHTT-SEEEEEETTG
T ss_pred HHhc-CcEEEEEecc
Confidence 7666 8999999974
No 76
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.85 E-value=7.3e-23 Score=216.25 Aligned_cols=172 Identities=17% Similarity=0.147 Sum_probs=133.5
Q ss_pred eceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--------hc--cccEEEEecCCC-
Q 046786 53 KGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--------EV--KRRTGFVAQNNV- 121 (604)
Q Consensus 53 ~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--------~~--~~~i~yv~Q~~~- 121 (604)
+++|+++++|++++|+||||||||||++.|+|+++ +++|+|.++|.+... .+ ++.++|++|++.
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~-----~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~ 222 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK-----NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDK 222 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSS
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc-----ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccc
Confidence 46889999999999999999999999999999875 468999999988742 12 347999999988
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCC--eE
Q 046786 122 FYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPS--LL 199 (604)
Q Consensus 122 l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~--il 199 (604)
++|.+|++|++.++.... .. ..+++.+|+.+..+. .+.+|| |||+.||++|+.+|+ +|
T Consensus 223 ~~p~~tv~e~l~~~~~~~----~d--------~~lldt~Gl~~~~~~-----~~~eLS---kqr~~iaral~~~P~e~lL 282 (359)
T 2og2_A 223 AKAATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYS-----LMEELI---ACKKAVGKIVSGAPNEILL 282 (359)
T ss_dssp CCHHHHHHHHHHHHHHTT----CS--------EEEEECCCCSSCCHH-----HHHHHH---HHHHHHHHHSTTCCSEEEE
T ss_pred cChhhhHHHHHHHHHhCC----CH--------HHHHHhcCCChhhhh-----HHHHHH---HHHHHHHHHHhcCCCceEE
Confidence 888999999999864311 10 135667788776553 445899 999999999999999 99
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCc--------hHHHhhcCeEEEEecCCeE
Q 046786 200 FLDEPTSGLDSTMAKKILVSLSKLAE-GGRTILMTIHQPA--------SSLFYMFNKILLLSSDGSS 257 (604)
Q Consensus 200 lLDEPtsgLD~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~--------~~i~~~~d~v~ll~~~G~~ 257 (604)
+|| ||+|||+... ++++.+ .|.|+|++||... +......+.+..+ ..|+.
T Consensus 283 vLD-pttglD~~~~------~~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~i-g~Ge~ 341 (359)
T 2og2_A 283 VLD-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFI-GVGEA 341 (359)
T ss_dssp EEE-GGGGGGGHHH------HHHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEE-ECSSS
T ss_pred EEc-CCCCCCHHHH------HHHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEE-eCCCC
Confidence 999 9999998765 345554 5899999999421 1233445677777 56653
No 77
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.84 E-value=3e-20 Score=214.83 Aligned_cols=110 Identities=27% Similarity=0.436 Sum_probs=95.9
Q ss_pred HHHHHHHHHHcCCCcc-ccccccCccCCCcCHHHHHHHHHHHHHhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 046786 150 VLHAEAVINQLGLARC-RNSIIGGRLVRGLSGGERKRISIGQELLINP--SLLFLDEPTSGLDSTMAKKILVSLSKLAEG 226 (604)
Q Consensus 150 ~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRvsia~~L~~~p--~illLDEPtsgLD~~~~~~i~~~l~~la~~ 226 (604)
.++++ .++.+||.+. .+ +.+.+|||||||||.||++|+.+| .+|+|||||+|||+.....+.+.|++|++.
T Consensus 357 ~~rl~-~L~~vGL~~l~l~-----r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~ 430 (842)
T 2vf7_A 357 VKRLD-VLLHLGLGYLGLD-----RSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRG 430 (842)
T ss_dssp HHHHH-HHHHTTCTTSBTT-----CBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTT
T ss_pred HHHHH-HHHhCCCCcCCcc-----CCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHc
Confidence 34454 6888999764 44 556799999999999999999999 599999999999999999999999999988
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEe-----cCCeEEEecChhhHH
Q 046786 227 GRTILMTIHQPASSLFYMFNKILLLS-----SDGSSLYFGKGEDVI 267 (604)
Q Consensus 227 g~tvi~~~Hq~~~~i~~~~d~v~ll~-----~~G~~v~~G~~~~~~ 267 (604)
|.|||+++|++. +...+|++++|. ++|++++.|+++++.
T Consensus 431 G~TVIvVeHdl~--~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 431 GNSLFVVEHDLD--VIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp TCEEEEECCCHH--HHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred CCEEEEEcCCHH--HHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 999999999974 457899999994 489999999988763
No 78
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.84 E-value=3.7e-23 Score=224.48 Aligned_cols=177 Identities=14% Similarity=0.121 Sum_probs=142.3
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCE---eCCh---------hccccEEE
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGK---QFSA---------EVKRRTGF 115 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~---~~~~---------~~~~~i~y 115 (604)
+..+|+++ +.+.+||+++|+|||||||||||++|+|..+ +++|.|.++|+ ++.. .+++.++|
T Consensus 144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~-----~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~ 217 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR-----ADVIVVGLIGERGREVKDFIENILGPDGRARSVVI 217 (438)
T ss_dssp SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC-----CSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEE
T ss_pred CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC-----CCeEEEEEeceecHHHHHHHHhhccccccCceEEE
Confidence 46699999 9999999999999999999999999999875 56999999998 4422 24677999
Q ss_pred EecC-CCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhh
Q 046786 116 VAQN-NVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLI 194 (604)
Q Consensus 116 v~Q~-~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~ 194 (604)
|+|+ +.+++.+||.+|+.+.+...... .+++ ....| ....+|+|| ||++|| +.
T Consensus 218 v~q~~~~~~~~~~v~~~~~~~ae~~~~~-------~~~v---------~~~ld------~l~~lS~g~-qrvslA---l~ 271 (438)
T 2dpy_A 218 AAPADVSPLLRMQGAAYATRIAEDFRDR-------GQHV---------LLIMD------SLTRYAMAQ-REIALA---IG 271 (438)
T ss_dssp EECTTSCHHHHHHHHHHHHHHHHHHHTT-------TCEE---------EEEEE------CHHHHHHHH-HHHHHH---TT
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHhC-------CCCH---------HHHHH------hHHHHHHHH-HHHHHH---hC
Confidence 9995 55677889999998866432000 0000 01111 245799999 999999 88
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh---C-CC-----EEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhh
Q 046786 195 NPSLLFLDEPTSGLDSTMAKKILVSLSKLAE---G-GR-----TILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGED 265 (604)
Q Consensus 195 ~p~illLDEPtsgLD~~~~~~i~~~l~~la~---~-g~-----tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~ 265 (604)
+|++ |+|||+.....+.+.++++.+ + |+ ||++++||++ ...+|+++.+ .+|+++..|++.+
T Consensus 272 ~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l-~dG~Ivl~~~~~~ 341 (438)
T 2dpy_A 272 EPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAI-LDGHIVLSRRLAE 341 (438)
T ss_dssp CCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHH-SSEEEEECHHHHH
T ss_pred CCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEE-eCcEEEEeCCHHH
Confidence 9988 999999999999999999976 3 75 9999999987 4678999999 8999999998765
Q ss_pred H
Q 046786 266 V 266 (604)
Q Consensus 266 ~ 266 (604)
+
T Consensus 342 ~ 342 (438)
T 2dpy_A 342 A 342 (438)
T ss_dssp T
T ss_pred c
Confidence 4
No 79
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.83 E-value=3e-22 Score=210.05 Aligned_cols=130 Identities=18% Similarity=0.245 Sum_probs=106.6
Q ss_pred eeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--hccccEEEEecCCCCCCCCCH
Q 046786 51 ILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--EVKRRTGFVAQNNVFYPHLTV 128 (604)
Q Consensus 51 iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--~~~~~i~yv~Q~~~l~~~lTv 128 (604)
+++++|+.+++|++++|+||||||||||||+|+|.++ |++|.|.++|.+... ..++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~-----~~~g~i~i~~~~e~~~~~~~~~i~~~~----------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP-----KEERIISIEDTEEIVFKHHKNYTQLFF----------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC-----TTSCEEEEESSCCCCCSSCSSEEEEEC-----------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCCcEEEECCeeccccccchhEEEEEe-----------
Confidence 7899999999999999999999999999999999985 568999999864211 1233344432
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 046786 129 AETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGL 208 (604)
Q Consensus 129 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgL 208 (604)
+ |||+||++||++|..+|+++++||||+
T Consensus 224 ------------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~-- 251 (330)
T 2pt7_A 224 ------------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS-- 251 (330)
T ss_dssp ------------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS--
T ss_pred ------------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh--
Confidence 1 799999999999999999999999998
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCe
Q 046786 209 DSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGS 256 (604)
Q Consensus 209 D~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~ 256 (604)
.++.+.|+.+...+.|+|+|+|+++ ....+|++++| .+|+
T Consensus 252 -----~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l-~~g~ 291 (330)
T 2pt7_A 252 -----SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANM-SSSN 291 (330)
T ss_dssp -----THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHH-HHTS
T ss_pred -----HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheeh-hcCC
Confidence 2466778777654458999999986 56789999999 6664
No 80
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.83 E-value=4.3e-25 Score=218.19 Aligned_cols=154 Identities=14% Similarity=0.112 Sum_probs=100.9
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-----hccccEEEEecCCCCC
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-----EVKRRTGFVAQNNVFY 123 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-----~~~~~i~yv~Q~~~l~ 123 (604)
..-|+|||+++++|++++|+||||||||||+|+|+|+. | |+|.+ |.+... ..++.++|++|++.++
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~------p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~ 80 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF------P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIF 80 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS------T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC------C--CcEEE-eecccCCCCCcccccCCeEEECCHHHH
Confidence 44799999999999999999999999999999999975 2 78888 766521 2356799999987666
Q ss_pred CCCCH-HHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHH-----HHHHhhCC
Q 046786 124 PHLTV-AETLVFTALLRLP-NSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISI-----GQELLINP 196 (604)
Q Consensus 124 ~~lTv-~e~l~f~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsi-----a~~L~~~p 196 (604)
+.++. .+++.+. ..... ...++ +.++++++...+. .+. ..+||||+||++| +++++.+|
T Consensus 81 ~~~~~~~~~l~~~-~~~~~~~g~~~----~~i~~~l~~~~~~-----il~----~~lsggq~qR~~i~~~~~~~~ll~~~ 146 (218)
T 1z6g_A 81 EDKLKNEDFLEYD-NYANNFYGTLK----SEYDKAKEQNKIC-----LFE----MNINGVKQLKKSTHIKNALYIFIKPP 146 (218)
T ss_dssp HHHHHTTCEEEEE-EETTEEEEEEH----HHHHHHHHTTCEE-----EEE----ECHHHHHHHTTCSSCCSCEEEEEECS
T ss_pred HHhhhccchhhhh-hcccccCCCcH----HHHHHHHhCCCcE-----EEE----ecHHHHHHHHHHhcCCCcEEEEEeCc
Confidence 54321 1111110 00000 01111 2356666653321 111 4799999999999 88999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 046786 197 SLLFLDEPTSGLDSTMAKKILVSLSKLAE 225 (604)
Q Consensus 197 ~illLDEPtsgLD~~~~~~i~~~l~~la~ 225 (604)
++++|||||+++|..+...+.+.|++..+
T Consensus 147 ~~~~Lde~~~~~d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 147 STDVLLSRLLTRNTENQEQIQKRMEQLNI 175 (218)
T ss_dssp CHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999887754
No 81
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.82 E-value=2.4e-20 Score=197.24 Aligned_cols=86 Identities=17% Similarity=0.106 Sum_probs=77.8
Q ss_pred CccCC-CcCHHHHHHHHHHHHHh---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHH
Q 046786 172 GRLVR-GLSGGERKRISIGQELL---------INPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSL 241 (604)
Q Consensus 172 ~~~~~-~LSgGerqRvsia~~L~---------~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i 241 (604)
+..++ .+|||||||++||++|+ .+|+||+|||||++||+..+..+++.|+++. .|+|+++|. ..
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~-- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP-- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT--
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc--
Confidence 45677 79999999999999999 8999999999999999999999999998874 699999994 32
Q ss_pred HhhcCeEEEEecCCeEEEecChhhH
Q 046786 242 FYMFNKILLLSSDGSSLYFGKGEDV 266 (604)
Q Consensus 242 ~~~~d~v~ll~~~G~~v~~G~~~~~ 266 (604)
.+|+++++ ++|+++..|+++++
T Consensus 333 --~~~~i~~l-~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 --GAALTLRA-QAGRFTPVADEEMQ 354 (359)
T ss_dssp --TCSEEEEE-ETTEEEECCCTTTS
T ss_pred --cCCEEEEE-ECCEEEecCCHHHH
Confidence 78999999 89999999998765
No 82
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.82 E-value=1.8e-21 Score=200.64 Aligned_cols=185 Identities=12% Similarity=0.120 Sum_probs=123.6
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCcccc-EEEECCEeCCh-hccccEEEEecCCCCCCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQG-HITYNGKQFSA-EVKRRTGFVAQNNVFYPH 125 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G-~I~~~G~~~~~-~~~~~i~yv~Q~~~l~~~ 125 (604)
+..+|+++++.+++|++++|+||||||||||++.|+|... +++| .|.+.+.+.+. ..++++.++.|+..
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~-----~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~---- 91 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG-----TAMGKKVGLAMLEESVEETAEDLIGLHNRVR---- 91 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH-----HTSCCCEEEEESSSCHHHHHHHHHHHHTTCC----
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH-----HHcCCeEEEEeCcCCHHHHHHHHHHHHcCCC----
Confidence 3458999999999999999999999999999999999874 3457 67655444433 33333444444322
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHH-HHHHHHHHHHhhCCCeEEEeCC
Q 046786 126 LTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGE-RKRISIGQELLINPSLLFLDEP 204 (604)
Q Consensus 126 lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe-rqRvsia~~L~~~p~illLDEP 204 (604)
+++.+++.... + +.++..+.++++++..++. .. ..+..+|.+| +||+. |+++..+|+++++|||
T Consensus 92 ~~~~~~l~~~~-~------~~~~~~~~~~~~l~~~~l~-i~------~~~~~~~~~~l~~~~~-a~~~~~~p~llilDep 156 (296)
T 1cr0_A 92 LRQSDSLKREI-I------ENGKFDQWFDELFGNDTFH-LY------DSFAEAETDRLLAKLA-YMRSGLGCDVIILDHI 156 (296)
T ss_dssp GGGCHHHHHHH-H------HHTHHHHHHHHHHSSSCEE-EE------CCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEE
T ss_pred hhhccccccCC-C------CHHHHHHHHHHHhccCCEE-EE------CCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCc
Confidence 12334443321 1 1222333445554433331 11 1234688898 66666 9999999999999999
Q ss_pred CC---C---CCH-HHHHHHHHHHHHHHhC-CCEEEEEecCCc-h--------------------HHHhhcCeEEEEecCC
Q 046786 205 TS---G---LDS-TMAKKILVSLSKLAEG-GRTILMTIHQPA-S--------------------SLFYMFNKILLLSSDG 255 (604)
Q Consensus 205 ts---g---LD~-~~~~~i~~~l~~la~~-g~tvi~~~Hq~~-~--------------------~i~~~~d~v~ll~~~G 255 (604)
|+ + +|. ....++++.|++++++ |.|||+++|+.. . .+.+.+|++++| .+|
T Consensus 157 t~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L-~~~ 235 (296)
T 1cr0_A 157 SIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIAL-ERN 235 (296)
T ss_dssp C-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEE-EEC
T ss_pred cccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEE-ecC
Confidence 99 5 555 6678899999999865 999999999962 2 577899999999 677
Q ss_pred eE
Q 046786 256 SS 257 (604)
Q Consensus 256 ~~ 257 (604)
+.
T Consensus 236 ~~ 237 (296)
T 1cr0_A 236 QQ 237 (296)
T ss_dssp --
T ss_pred cc
Confidence 64
No 83
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.82 E-value=1e-19 Score=191.45 Aligned_cols=78 Identities=29% Similarity=0.401 Sum_probs=70.3
Q ss_pred ccCCCcCHHHHH------HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcC
Q 046786 173 RLVRGLSGGERK------RISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFN 246 (604)
Q Consensus 173 ~~~~~LSgGerq------Rvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d 246 (604)
+.+..||||||| |+++|++|+.+|++|+|||||+|||+..+..+++.|+++.++|.|||+++|++ ++...+|
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d 321 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAAD 321 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCS
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCC
Confidence 457799999999 56777888889999999999999999999999999999987889999999995 4678999
Q ss_pred eEEEEe
Q 046786 247 KILLLS 252 (604)
Q Consensus 247 ~v~ll~ 252 (604)
+++.|.
T Consensus 322 ~~~~l~ 327 (339)
T 3qkt_A 322 HVIRIS 327 (339)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999983
No 84
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.82 E-value=2.3e-20 Score=217.37 Aligned_cols=154 Identities=22% Similarity=0.384 Sum_probs=120.4
Q ss_pred CccccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCC-CC-H---HHHHHHHHHHHHHcCCCcc-
Q 046786 92 TVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNS-LK-R---EEKVLHAEAVINQLGLARC- 165 (604)
Q Consensus 92 ~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~-~~-~---~~~~~~v~~~l~~lgL~~~- 165 (604)
.|..|+|.++|+++.. +..+|+.|++.|.....++.. .. . ....+...+.|+.+||.+.
T Consensus 393 ~~~~~~V~i~G~~i~~---------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~vgL~~l~ 457 (916)
T 3pih_A 393 NREALSVKINGLNIHE---------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEFLVDVGLEYLT 457 (916)
T ss_dssp CTTGGGEEETTEEHHH---------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHHHHHTTTCTTCB
T ss_pred ChHhcCcEECCccHHH---------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHHHHHHcCCcccc
Confidence 4678999999998743 234678888877544332211 00 0 1112334567888999754
Q ss_pred ccccccCccCCCcCHHHHHHHHHHHHHhhCCC--eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh
Q 046786 166 RNSIIGGRLVRGLSGGERKRISIGQELLINPS--LLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFY 243 (604)
Q Consensus 166 ~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~--illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~ 243 (604)
.+ +.+.+|||||||||.||++|+++|+ +|+|||||+|||+.....+++.|++++++|.|||+++|++. .+ .
T Consensus 458 l~-----r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~-~~-~ 530 (916)
T 3pih_A 458 LS-----RSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEE-VI-R 530 (916)
T ss_dssp TT-----SBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHH-HH-H
T ss_pred cc-----CCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-H
Confidence 34 5567999999999999999999887 99999999999999999999999999988999999999974 34 5
Q ss_pred hcCeEEEEe-----cCCeEEEecChhhHH
Q 046786 244 MFNKILLLS-----SDGSSLYFGKGEDVI 267 (604)
Q Consensus 244 ~~d~v~ll~-----~~G~~v~~G~~~~~~ 267 (604)
.+|+++.|. ++|++++.|+++++.
T Consensus 531 ~aD~ii~lgpgag~~~G~iv~~G~~~e~~ 559 (916)
T 3pih_A 531 NADHIIDIGPGGGTNGGRVVFQGTVDELL 559 (916)
T ss_dssp TCSEEEEEESSSGGGCSEEEEEECHHHHH
T ss_pred hCCEEEEEcCCcccCCCEEEEeechhhhh
Confidence 699999993 589999999998875
No 85
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.81 E-value=1.3e-21 Score=196.51 Aligned_cols=181 Identities=10% Similarity=0.091 Sum_probs=111.2
Q ss_pred ccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCC
Q 046786 46 DEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPH 125 (604)
Q Consensus 46 ~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~ 125 (604)
.+++.+|+|+||++++|+++||.||||||||||+++|+|++ |.+.++ ..++.++|++|++ +++.
T Consensus 9 ~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l---------G~~~~~------~~~~~i~~v~~d~-~~~~ 72 (245)
T 2jeo_A 9 SGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL---------GQNEVE------QRQRKVVILSQDR-FYKV 72 (245)
T ss_dssp --------------CCSEEEEEECSTTSSHHHHHHHHHHHH---------TGGGSC------GGGCSEEEEEGGG-GBCC
T ss_pred CCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh---------chhccc------ccCCceEEEeCCc-Cccc
Confidence 35667999999999999999999999999999999999965 222233 2467899999995 6778
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 046786 126 LTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPT 205 (604)
Q Consensus 126 lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPt 205 (604)
+|+.|++.+...... ...+.....+.+.+.++.+ .+..+ ..+..+|+||+||+.+ ++++.+|+++++|||.
T Consensus 73 l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~~l--~~~~~-----~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~ 143 (245)
T 2jeo_A 73 LTAEQKAKALKGQYN-FDHPDAFDNDLMHRTLKNI--VEGKT-----VEVPTYDFVTHSRLPE-TTVVYPADVVLFEGIL 143 (245)
T ss_dssp CCHHHHHHHHTTCCC-TTSGGGBCHHHHHHHHHHH--HTTCC-----EEECCEETTTTEECSS-CEEECCCSEEEEECTT
T ss_pred cCHhHhhhhhccCCC-CCCcccccHHHHHHHHHHH--HCCCC-----eecccccccccCccCc-eEEecCCCEEEEeCcc
Confidence 999999877543211 1111111123344555543 33333 3456899999999988 5788899999999998
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh-hcCeEEEEecCCeEEEecChhhHHHHHH
Q 046786 206 SGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFY-MFNKILLLSSDGSSLYFGKGEDVINYFA 271 (604)
Q Consensus 206 sgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~-~~d~v~ll~~~G~~v~~G~~~~~~~~f~ 271 (604)
...|.. +.++ .+.+|++++|+.. .+.+ +.+++ .+|+ +.+++.+.+.
T Consensus 144 ~~~~~~--------l~~~--~~~~i~v~th~~~-~~~r~~~r~~----~~G~-----~~e~~~~~~~ 190 (245)
T 2jeo_A 144 VFYSQE--------IRDM--FHLRLFVDTDSDV-RLSRRVLRDV----RRGR-----DLEQILTQYT 190 (245)
T ss_dssp TTTSHH--------HHTT--CSEEEEEECCHHH-HHHHHHHHHT----C--------CHHHHHHHHH
T ss_pred ccccHH--------HHHh--cCeEEEEECCHHH-HHHHHHHHHH----HcCC-----CHHHHHHHHH
Confidence 888863 2222 3789999999733 3333 33322 3454 4566655443
No 86
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.80 E-value=1.2e-19 Score=201.52 Aligned_cols=78 Identities=21% Similarity=0.333 Sum_probs=71.5
Q ss_pred cCCCc-CHHHHHHHHHHHHHhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEE
Q 046786 174 LVRGL-SGGERKRISIGQELLINP--SLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILL 250 (604)
Q Consensus 174 ~~~~L-SgGerqRvsia~~L~~~p--~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~l 250 (604)
.+..| ||||||||+||++|+.+| ++|+|||||+|||+.++..+.+.|+++++ |+|||++||+|. +...+|++++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~ 469 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYK 469 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEE
Confidence 46677 999999999999999999 99999999999999999999999999987 899999999975 4567999999
Q ss_pred EecCC
Q 046786 251 LSSDG 255 (604)
Q Consensus 251 l~~~G 255 (604)
| .+|
T Consensus 470 ~-~~~ 473 (517)
T 4ad8_A 470 V-EKQ 473 (517)
T ss_dssp E-ECC
T ss_pred E-ecc
Confidence 9 554
No 87
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.79 E-value=7.1e-22 Score=205.51 Aligned_cols=123 Identities=13% Similarity=0.141 Sum_probs=98.4
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHh
Q 046786 59 VSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTVAETLVFTALL 138 (604)
Q Consensus 59 i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~ 138 (604)
+++|+++||+||||||||||+++|+|+++ |+.|. +.++||+|++.+++. |++|++.+...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~-----~~~G~-------------~~v~~v~qd~~~~~~-t~~e~~~~~~~- 146 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLA-----RWDHH-------------PRVDLVTTDGFLYPN-AELQRRNLMHR- 146 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHH-----TSTTC-------------CCEEEEEGGGGBCCH-HHHHHTTCTTC-
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcc-----ccCCC-------------CeEEEEecCccCCcc-cHHHHHHHHHh-
Confidence 79999999999999999999999999885 23342 468999999999988 99999864211
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 046786 139 RLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDS 210 (604)
Q Consensus 139 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~ 210 (604)
.+.+.....+.+.+.++.++ .+..+. .+..|||||+||+++|++++.+|+|||+|||+..+|+
T Consensus 147 ---~g~~~~~d~~~~~~~L~~l~-~~~~~~-----~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 147 ---KGFPESYNRRALMRFVTSVK-SGSDYA-----CAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp ---TTSGGGBCHHHHHHHHHHHH-TTCSCE-----EEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred ---cCCChHHHHHHHHHHHHHhC-CCcccC-----CcccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 11222223456778888887 444443 3458999999999999999999999999999999986
No 88
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.79 E-value=1e-19 Score=202.40 Aligned_cols=156 Identities=15% Similarity=0.134 Sum_probs=119.4
Q ss_pred EEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHH
Q 046786 56 SGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTVAETLVFT 135 (604)
Q Consensus 56 s~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~f~ 135 (604)
++.+++|++++|+||||||||||+++++|...+ +|+ +.+.|++|++. .++.++.
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~------~G~-------------~vi~~~~ee~~----~~l~~~~--- 328 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA------NKE-------------RAILFAYEESR----AQLLRNA--- 328 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT------TTC-------------CEEEEESSSCH----HHHHHHH---
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh------CCC-------------CEEEEEEeCCH----HHHHHHH---
Confidence 558999999999999999999999999997642 243 12456666541 1222222
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH----
Q 046786 136 ALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDST---- 211 (604)
Q Consensus 136 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~---- 211 (604)
. +. +... ++ +...|+.+..+ ..+..|||||+||+.+|+++..+|+++++| ||+|||..
T Consensus 329 ~--~~--g~~~-------~~-~~~~g~~~~~~-----~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~ 390 (525)
T 1tf7_A 329 Y--SW--GMDF-------EE-MERQNLLKIVC-----AYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNN 390 (525)
T ss_dssp H--TT--SCCH-------HH-HHHTTSEEECC-----CCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHH
T ss_pred H--Hc--CCCH-------HH-HHhCCCEEEEE-----eccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChH
Confidence 1 11 1221 12 23456655444 456789999999999999999999999999 99999999
Q ss_pred -HHHHHHHHHHHHHhCCCEEEEEecCCc---------hHHHhhcCeEEEEecCCe
Q 046786 212 -MAKKILVSLSKLAEGGRTILMTIHQPA---------SSLFYMFNKILLLSSDGS 256 (604)
Q Consensus 212 -~~~~i~~~l~~la~~g~tvi~~~Hq~~---------~~i~~~~d~v~ll~~~G~ 256 (604)
.+..+.++++.+++.|.|||+++|++. ..+..++|++++| ++|+
T Consensus 391 ~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L-~~ge 444 (525)
T 1tf7_A 391 AFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILL-QYVE 444 (525)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEE-EEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEE-EEEE
Confidence 999999999999988999999999971 3567789999999 7776
No 89
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.79 E-value=2.1e-22 Score=224.17 Aligned_cols=169 Identities=16% Similarity=0.185 Sum_probs=120.4
Q ss_pred cccceeeceEE-EEecCeEEEEECCCCCcHHHHHHH--HHcCCCCCCCCccccEEEECCEeCCh---hccccEEEEecCC
Q 046786 47 EEKMILKGVSG-AVSPGELLAILGPSGCGKTTLLTA--LGGRLSNGKDTVTQGHITYNGKQFSA---EVKRRTGFVAQNN 120 (604)
Q Consensus 47 ~~~~iL~~vs~-~i~~Ge~~aIlGpsGaGKSTLL~~--L~g~~~~~~~~~~~G~I~~~G~~~~~---~~~~~i~yv~Q~~ 120 (604)
.+..+|++||+ .+++|++++|+||||||||||+++ ++|+.+ |++|.|+++|++... ..++.+||++|+.
T Consensus 23 ~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~-----~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~ 97 (525)
T 1tf7_A 23 TMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE-----FDEPGVFVTFEETPQDIIKNARSFGWDLAKL 97 (525)
T ss_dssp CCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH-----HCCCEEEEESSSCHHHHHHHHGGGTCCHHHH
T ss_pred CCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh-----CCCCEEEEEEeCCHHHHHHHHHHcCCChHHh
Confidence 35679999999 999999999999999999999999 789875 458999999988532 2345789999975
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEE
Q 046786 121 VFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLF 200 (604)
Q Consensus 121 ~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~ill 200 (604)
...++ +.+ ..... .+ ...++++.++|.+..+ +.++.|||| +|++++
T Consensus 98 ~~~~~------l~~---~~~~~--~~-----~~~~~l~~~~l~~~~~-----~~~~~LS~g-------------~~~~li 143 (525)
T 1tf7_A 98 VDEGK------LFI---LDASP--DP-----EGQEVVGGFDLSALIE-----RINYAIQKY-------------RARRVS 143 (525)
T ss_dssp HHTTS------EEE---EECCC--CS-----SCCSCCSSHHHHHHHH-----HHHHHHHHH-------------TCSEEE
T ss_pred hccCc------EEE---EecCc--cc-----chhhhhcccCHHHHHH-----HHHHHHHHc-------------CCCEEE
Confidence 42211 100 00000 00 0111222233332222 223355555 588999
Q ss_pred EeCCCC-----CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH--------HHhhcCeEEEEecCC
Q 046786 201 LDEPTS-----GLDSTMAKKILVSLSKLAEGGRTILMTIHQPASS--------LFYMFNKILLLSSDG 255 (604)
Q Consensus 201 LDEPts-----gLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~--------i~~~~d~v~ll~~~G 255 (604)
+||||+ +||+..+..+.++++++++.|+|||+++|++... ...++|++++| ++|
T Consensus 144 lDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L-~~~ 210 (525)
T 1tf7_A 144 IDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVIL-RNV 210 (525)
T ss_dssp EECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEE-EEE
T ss_pred ECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEE-EEE
Confidence 999998 5699999999999999988899999999998742 34569999999 663
No 90
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.77 E-value=3.5e-20 Score=219.16 Aligned_cols=161 Identities=19% Similarity=0.144 Sum_probs=115.9
Q ss_pred cccceeeceEEEEec-------CeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEE-EEec
Q 046786 47 EEKMILKGVSGAVSP-------GELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTG-FVAQ 118 (604)
Q Consensus 47 ~~~~iL~~vs~~i~~-------Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~-yv~Q 118 (604)
+++.+++|+++.+++ |++++|+||||||||||||+| |+.. + ..++| ||||
T Consensus 767 ~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~-----~----------------~aqiG~~Vpq 824 (1022)
T 2o8b_B 767 GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA-----V----------------MAQMGCYVPA 824 (1022)
T ss_dssp CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH-----H----------------HHTTTCCEES
T ss_pred CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH-----H----------------HhheeEEecc
Confidence 346799999999987 999999999999999999999 8763 1 23455 9999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCe
Q 046786 119 NNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSL 198 (604)
Q Consensus 119 ~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~i 198 (604)
+.. .+||.|++. .+ +|+.+..+ ...+.+|+++++ +++|++++++|++
T Consensus 825 ~~~---~l~v~d~I~----~r--------------------ig~~d~~~-----~~~stf~~em~~-~a~al~la~~~sL 871 (1022)
T 2o8b_B 825 EVC---RLTPIDRVF----TR--------------------LGASDRIM-----SGESTFFVELSE-TASILMHATAHSL 871 (1022)
T ss_dssp SEE---EECCCSBEE----EE--------------------CC--------------CHHHHHHHH-HHHHHHHCCTTCE
T ss_pred CcC---CCCHHHHHH----HH--------------------cCCHHHHh-----hchhhhHHHHHH-HHHHHHhCCCCcE
Confidence 763 456655441 01 12221111 113467777664 9999999999999
Q ss_pred EEEeCCCCCCCHHHH-HHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEecCCeEE--EecChhh
Q 046786 199 LFLDEPTSGLDSTMA-KKILVSLSKLAEG-GRTILMTIHQPASSLFYMFNKILLLSSDGSSL--YFGKGED 265 (604)
Q Consensus 199 llLDEPtsgLD~~~~-~~i~~~l~~la~~-g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v--~~G~~~~ 265 (604)
+||||||+|+|+... ..+...|+.++++ |.++|++||++. .+...+|++.++ +|++. +.|++++
T Consensus 872 lLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~--~g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 872 VLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVR--LGHMACMVENECED 939 (1022)
T ss_dssp EEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEE--EEEEEEC-------
T ss_pred EEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceee--cCeEEEEEecCccc
Confidence 999999999999985 5578999999876 999999999964 456678888887 48887 5565443
No 91
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.76 E-value=2.3e-18 Score=199.62 Aligned_cols=135 Identities=24% Similarity=0.405 Sum_probs=110.2
Q ss_pred CCCHHHHHHHHHHhcCCCC---CCH---HHHHHHHHHHHHHcCCCcc-ccccccCccCCCcCHHHHHHHHHHHHHhhCC-
Q 046786 125 HLTVAETLVFTALLRLPNS---LKR---EEKVLHAEAVINQLGLARC-RNSIIGGRLVRGLSGGERKRISIGQELLINP- 196 (604)
Q Consensus 125 ~lTv~e~l~f~~~~~~~~~---~~~---~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRvsia~~L~~~p- 196 (604)
.+||.|++.|...+.++.. ..+ ++..+++ +.|+.+||.+. .| +.+.+|||||||||.||++|.++|
T Consensus 451 ~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ld-----R~~~tLSGGEkQRV~LA~aL~~~~~ 524 (972)
T 2r6f_A 451 AMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLS-----RSAGTLSGGEAQRIRLATQIGSRLT 524 (972)
T ss_dssp TSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSS-----SBGGGCCHHHHHHHHHHHHHTTCCC
T ss_pred hCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccC-----CccccCCHHHHHHHHHHHHHhhCCC
Confidence 5899999999776653321 000 2334455 45899999754 45 556699999999999999999985
Q ss_pred -CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEe-----cCCeEEEecChhhHH
Q 046786 197 -SLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLS-----SDGSSLYFGKGEDVI 267 (604)
Q Consensus 197 -~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~-----~~G~~v~~G~~~~~~ 267 (604)
++|+|||||+|||+.....+++.|++|++.|.|||+++|++. . ...+|++++|. ++|++++.|+++++.
T Consensus 525 ~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~-~-i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 525 GVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED-T-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp SCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHH-H-HHSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred CCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-H-HHhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 999999999999999999999999999988999999999974 4 45799999993 489999999998764
No 92
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.76 E-value=7.4e-20 Score=185.61 Aligned_cols=130 Identities=20% Similarity=0.303 Sum_probs=98.6
Q ss_pred ceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCcc-ccEEEECCEeCChhccccEEEEecCCCCCCCCCH
Q 046786 50 MILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVT-QGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTV 128 (604)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~-~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv 128 (604)
.+|+|+| +++|++++|+|||||||||||++|+|.++ |+ +|+|.++|.++....+..+++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~-----~~~~G~I~~~g~~i~~~~~~~~~~v~q~--------- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN-----QTKSYHIITIEDPIEYVFKHKKSIVNQR--------- 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH-----HHCCCEEEEEESSCCSCCCCSSSEEEEE---------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC-----CCCCCEEEEcCCcceeecCCcceeeeHH---------
Confidence 4899999 89999999999999999999999999875 45 8999999877532111122222221
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 046786 129 AETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGL 208 (604)
Q Consensus 129 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgL 208 (604)
.+|+.. ..+ |++||++|..+|+++++||||
T Consensus 79 ------------------------------~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~--- 108 (261)
T 2eyu_A 79 ------------------------------EVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR--- 108 (261)
T ss_dssp ------------------------------EBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---
T ss_pred ------------------------------HhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---
Confidence 122221 122 899999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEE
Q 046786 209 DSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLL 251 (604)
Q Consensus 209 D~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll 251 (604)
|+.+...++ +. ++.|.+|++++|+++ ....+|+++.|
T Consensus 109 D~~~~~~~l---~~-~~~g~~vl~t~H~~~--~~~~~dri~~l 145 (261)
T 2eyu_A 109 DLETVETAL---RA-AETGHLVFGTLHTNT--AIDTIHRIVDI 145 (261)
T ss_dssp SHHHHHHHH---HH-HHTTCEEEEEECCSS--HHHHHHHHHHT
T ss_pred CHHHHHHHH---HH-HccCCEEEEEeCcch--HHHHHHHHhhh
Confidence 988866544 33 456999999999975 46778988877
No 93
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.76 E-value=5.1e-20 Score=183.69 Aligned_cols=162 Identities=15% Similarity=0.120 Sum_probs=106.4
Q ss_pred EEEecCeEEEEECCCCCcHHHHHHHHH--cCCCCCCCCccccEEEECCEeCCh---hccccEEEEecCCCCCCCCCHHHH
Q 046786 57 GAVSPGELLAILGPSGCGKTTLLTALG--GRLSNGKDTVTQGHITYNGKQFSA---EVKRRTGFVAQNNVFYPHLTVAET 131 (604)
Q Consensus 57 ~~i~~Ge~~aIlGpsGaGKSTLL~~L~--g~~~~~~~~~~~G~I~~~G~~~~~---~~~~~i~yv~Q~~~l~~~lTv~e~ 131 (604)
+-+++|++++|+||||||||||+++|+ |..+ +.+|.+.+++..... ...+.+||++|+....+.+++.++
T Consensus 25 Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 99 (251)
T 2ehv_A 25 GGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEE-----YGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDG 99 (251)
T ss_dssp TSEETTCEEEEECCTTSSHHHHHHHHHHHHHHH-----HCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-----CCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEc
Confidence 489999999999999999999999999 6522 236777777765432 223457888887555555555554
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCC--
Q 046786 132 LVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLD-- 209 (604)
Q Consensus 132 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD-- 209 (604)
....... .. ...... ....+.++..+...+..-..+|+++++||||++||
T Consensus 100 ~~~~~~~------~~----~~~~~~------------------~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~ 151 (251)
T 2ehv_A 100 VSSVVGL------PS----EEKFVL------------------EDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRL 151 (251)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHS
T ss_pred ccccccc------cc----ccceec------------------cCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhc
Confidence 3221100 00 000000 01223444444444444468999999999999998
Q ss_pred ---HHHHHHHHHHHHHHHhCCCEEEEEecCCchH--------HHhhc-CeEEEE
Q 046786 210 ---STMAKKILVSLSKLAEGGRTILMTIHQPASS--------LFYMF-NKILLL 251 (604)
Q Consensus 210 ---~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~--------i~~~~-d~v~ll 251 (604)
+..+..+.++++.+++.|+|||+++|++... +..++ |++++|
T Consensus 152 ~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l 205 (251)
T 2ehv_A 152 EEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVL 205 (251)
T ss_dssp SSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEE
Confidence 6777779999999988899999999997643 15778 999999
No 94
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.76 E-value=1.1e-18 Score=204.13 Aligned_cols=160 Identities=18% Similarity=0.168 Sum_probs=112.3
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLT 127 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lT 127 (604)
.+.+++|+|+.+++|++++|+||||||||||||++++..- .+..| +|||++....+.
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~----~aq~G-----------------~~vpa~~~~~~~-- 704 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVL----MAQIG-----------------CFVPCESAEVSI-- 704 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHH----HHHHT-----------------CCBSEEEEEEEC--
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHH----HHhcC-----------------CccccccccchH--
Confidence 3568999999999999999999999999999999944211 00111 111111000000
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHH--hhCCCeEEEeCCC
Q 046786 128 VAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQEL--LINPSLLFLDEPT 205 (604)
Q Consensus 128 v~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L--~~~p~illLDEPt 205 (604)
+++++..+|+.+ ...+++|+|++++..+|++| +++|+++||||||
T Consensus 705 -------------------------~d~i~~~ig~~d--------~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~ 751 (934)
T 3thx_A 705 -------------------------VDCILARVGAGD--------SQLKGVSTFMAEMLETASILRSATKDSLIIIDELG 751 (934)
T ss_dssp -------------------------CSEEEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEEEEESCS
T ss_pred -------------------------HHHHHHhcCchh--------hHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCC
Confidence 000111122221 12347888888888888888 9999999999999
Q ss_pred CCCCHHHHHHH-HHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhH
Q 046786 206 SGLDSTMAKKI-LVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266 (604)
Q Consensus 206 sgLD~~~~~~i-~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~ 266 (604)
+|||+.....+ ..+++.+++ .|.++|++||++ ++..++|++..+ .+|++...++.+++
T Consensus 752 ~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v-~ng~v~~~~~~~~l 811 (934)
T 3thx_A 752 RGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTV-NNLHVTALTTEETL 811 (934)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTE-EEEEEEEEEETTEE
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhccccee-EeeEEEEEecCCcE
Confidence 99999998888 677788886 499999999995 467899999988 89999998877654
No 95
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.76 E-value=3.3e-20 Score=195.56 Aligned_cols=178 Identities=14% Similarity=0.169 Sum_probs=130.1
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-----------hccccEEEE
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-----------EVKRRTGFV 116 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-----------~~~~~i~yv 116 (604)
+..+|+++ +.+.+||+++|+||||||||||+++|+|..+ |+.|.|.+.|++..+ .+++.+.++
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~-----~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~ 131 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS-----ADIIVLALIGERGREVNEFLALLPQSTLSKCVLVV 131 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC-----CSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEE
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEE
Confidence 45699999 9999999999999999999999999999875 568999999975311 134457888
Q ss_pred ecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCC
Q 046786 117 AQNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINP 196 (604)
Q Consensus 117 ~Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p 196 (604)
+|.+. ...+.+.-... ...+.+.....+ .|..+--+.+..+|+|| ||+++| +.+|
T Consensus 132 ~~~~~-----~~~~r~~~~~~------------~~~~ae~~~~~~----~~vl~~ld~~~~lS~g~-r~v~la---l~~p 186 (347)
T 2obl_A 132 TTSDR-----PALERMKAAFT------------ATTIAEYFRDQG----KNVLLMMDSVTRYARAA-RDVGLA---SGEP 186 (347)
T ss_dssp ECTTS-----CHHHHHHHHHH------------HHHHHHHHHTTT----CEEEEEEETHHHHHHHH-HHHHHH---TTCC
T ss_pred ECCCC-----CHHHHHHHHHH------------HHHHHHHHHhcc----ccHHHHHhhHHHHHHHH-HHHHHH---cCCC
Confidence 87542 22232221100 000111111111 11111002356899999 899999 6888
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCC-----EEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhH
Q 046786 197 SLLFLDEPTSGLDSTMAKKILVSLSKLAE--GGR-----TILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDV 266 (604)
Q Consensus 197 ~illLDEPtsgLD~~~~~~i~~~l~~la~--~g~-----tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~ 266 (604)
++ |+|||+....++.++++++.+ .|. ||++++||.+ ...+|+++.+ .+|+++..|++++.
T Consensus 187 ~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i-~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 187 DV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSI-LDGHIVLTRELAEE 253 (347)
T ss_dssp CC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHH-CSEEEEBCHHHHTT
T ss_pred Cc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEe-eCcEEEEeCCHHHc
Confidence 87 999999999999999999975 487 9999999987 4568999999 89999999887655
No 96
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.75 E-value=3.7e-18 Score=198.53 Aligned_cols=133 Identities=23% Similarity=0.359 Sum_probs=108.8
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCH----------HHHHHHHHHHHHHcCCCcc-ccccccCccCCCcCHHHHHHHHHHHHH
Q 046786 124 PHLTVAETLVFTALLRLPNSLKR----------EEKVLHAEAVINQLGLARC-RNSIIGGRLVRGLSGGERKRISIGQEL 192 (604)
Q Consensus 124 ~~lTv~e~l~f~~~~~~~~~~~~----------~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRvsia~~L 192 (604)
..+||.|.+.|...+. .+. ++..+++ +.|+.+||... .| +.+.+|||||||||.||++|
T Consensus 467 ~~ltV~e~l~f~enl~----l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~-----r~~~tLSGGEkQRV~LA~aL 536 (993)
T 2ygr_A 467 CELSIADCADFLNALT----LGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLS-----RAAATLSGGEAQRIRLATQI 536 (993)
T ss_dssp SHHHHHHHHHTTTTTT----SCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTT-----CBGGGCCHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHhcC----CCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccC-----CCcccCCHHHHHHHHHHHHH
Confidence 4578999998854333 233 2333444 35788999754 44 55679999999999999999
Q ss_pred hhC--CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEe-----cCCeEEEecChhh
Q 046786 193 LIN--PSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLS-----SDGSSLYFGKGED 265 (604)
Q Consensus 193 ~~~--p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~-----~~G~~v~~G~~~~ 265 (604)
.++ |++|+|||||+|||+.....+++.|++|++.|.|||+++|++. . ...+|++++|. ++|++++.|++++
T Consensus 537 ~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~-~-i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e 614 (993)
T 2ygr_A 537 GSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDED-T-IEHADWIVDIGPGAGEHGGRIVHSGPYDE 614 (993)
T ss_dssp TTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-H-HHTCSEEEEECSSSGGGCCSCCEEECHHH
T ss_pred hhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHH-H-HHhCCEEEEecCccccCCCEEEEeeCHHH
Confidence 999 5899999999999999999999999999989999999999974 3 46799999993 4899999999988
Q ss_pred HHH
Q 046786 266 VIN 268 (604)
Q Consensus 266 ~~~ 268 (604)
+..
T Consensus 615 ~~~ 617 (993)
T 2ygr_A 615 LLR 617 (993)
T ss_dssp HHH
T ss_pred hhh
Confidence 753
No 97
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.74 E-value=3.7e-18 Score=158.24 Aligned_cols=79 Identities=28% Similarity=0.369 Sum_probs=72.4
Q ss_pred CccCCCcCHHHHHHHHHH------HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhc
Q 046786 172 GRLVRGLSGGERKRISIG------QELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMF 245 (604)
Q Consensus 172 ~~~~~~LSgGerqRvsia------~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~ 245 (604)
++.+..||||||||++|| ++|+.+|++++|||||+|||+.+...+.+.|+++.++|+|||+++|++ ++...+
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~ 129 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAA 129 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGC
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhC
Confidence 456789999999999886 899999999999999999999999999999999987799999999997 367899
Q ss_pred CeEEEEe
Q 046786 246 NKILLLS 252 (604)
Q Consensus 246 d~v~ll~ 252 (604)
|++++|.
T Consensus 130 d~ii~l~ 136 (148)
T 1f2t_B 130 DHVIRIS 136 (148)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999994
No 98
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.74 E-value=1.7e-19 Score=210.50 Aligned_cols=145 Identities=15% Similarity=0.188 Sum_probs=100.8
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLT 127 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lT 127 (604)
++.+++|+|+.+++|++++|+||||||||||||++++.... ...|. .+... ...++. -+.++..+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~----aq~g~------~vpa~-~~~i~~---~d~i~~~ig 724 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM----AQIGS------YVPAE-EATIGI---VDGIFTRMG 724 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH----HHHTC------CBSSS-EEEEEC---CSEEEEEC-
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH----hhcCc------cccch-hhhhhH---HHHHHHhCC
Confidence 46799999999999999999999999999999999875310 01111 01000 011121 122222222
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 046786 128 VAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSG 207 (604)
Q Consensus 128 v~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsg 207 (604)
+.+++ . ...+++|+||+|++.|+++ +++|+++||||||+|
T Consensus 725 ~~d~l----------------------------------~-----~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~G 764 (918)
T 3thx_B 725 AADNI----------------------------------Y-----KGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRG 764 (918)
T ss_dssp ------------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTT
T ss_pred hHHHH----------------------------------H-----HhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCC
Confidence 21111 1 1234789999999999998 899999999999999
Q ss_pred CCHHHHHHHH-HHHHHHHh-CCCEEEEEecCCchHHHhhcCeE
Q 046786 208 LDSTMAKKIL-VSLSKLAE-GGRTILMTIHQPASSLFYMFNKI 248 (604)
Q Consensus 208 LD~~~~~~i~-~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v 248 (604)
||+.....+. ..++.+++ .|.|||++||++. +..++|+.
T Consensus 765 lD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~~ 805 (918)
T 3thx_B 765 TSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKNY 805 (918)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhhc
Confidence 9999999987 77888875 5999999999964 45566643
No 99
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.73 E-value=3.7e-19 Score=175.18 Aligned_cols=155 Identities=21% Similarity=0.229 Sum_probs=97.0
Q ss_pred EEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHH
Q 046786 57 GAVSPGELLAILGPSGCGKTTLLTALGGRLSNG--KDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTVAETLVF 134 (604)
Q Consensus 57 ~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~--~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~f 134 (604)
+-+++|++++|+||||||||||+++|+|...+. ......|.+++++.+... .+.+++++|+..+.+. |+.||+.+
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~--~~~i~~~~~~~~~~~~-~~~~~~~~ 96 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR--PERIREIAQNRGLDPD-EVLKHIYV 96 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC--HHHHHHHHHHTTSCHH-HHHHTEEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC--HHHHHHHHHHcCCCHH-HHhhcEEE
Confidence 579999999999999999999999999954321 000123466666654210 1224444444433332 33333321
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHH-HHHHHHHHHHhh-------CCCeEEEeCCCC
Q 046786 135 TALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGE-RKRISIGQELLI-------NPSLLFLDEPTS 206 (604)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe-rqRvsia~~L~~-------~p~illLDEPts 206 (604)
. ...++++ ++++..+.+++. +|+++++||||+
T Consensus 97 ~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 136 (231)
T 4a74_A 97 A----------------------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 136 (231)
T ss_dssp E----------------------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSH
T ss_pred E----------------------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHH
Confidence 1 1223332 333455555555 899999999999
Q ss_pred CCCHH-------H-----HHHHHHHHHHHHh-CCCEEEEEecCCch---HHHhhcCeEEEEecCC
Q 046786 207 GLDST-------M-----AKKILVSLSKLAE-GGRTILMTIHQPAS---SLFYMFNKILLLSSDG 255 (604)
Q Consensus 207 gLD~~-------~-----~~~i~~~l~~la~-~g~tvi~~~Hq~~~---~i~~~~d~v~ll~~~G 255 (604)
++|+. . ...+++.|+++++ .|.|||+++|.... .+...+|+++.+ ++|
T Consensus 137 ~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l-~~~ 200 (231)
T 4a74_A 137 HFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYL-RKG 200 (231)
T ss_dssp HHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEE-EEC
T ss_pred HhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEE-Eec
Confidence 99984 2 2378888888875 49999999995431 367789999999 544
No 100
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.72 E-value=1.4e-18 Score=199.95 Aligned_cols=134 Identities=22% Similarity=0.221 Sum_probs=101.9
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLT 127 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lT 127 (604)
++.+++|+|+. |++++|+||||||||||||+|+|+.. .+..|.+. . ..+..+++++| +++.++
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~----~~~~G~~v------p-a~~~~i~~v~~---i~~~~~ 627 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIAL----LAQVGSFV------P-AEEAHLPLFDG---IYTRIG 627 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHH----HHTTTCCB------S-SSEEEECCCSE---EEEECC
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhh----hcccCcee------e-hhccceeeHHH---hhccCC
Confidence 46799999999 99999999999999999999999752 12356542 1 12345788777 455566
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHH--hhCCCeEEEeCC-
Q 046786 128 VAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQEL--LINPSLLFLDEP- 204 (604)
Q Consensus 128 v~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L--~~~p~illLDEP- 204 (604)
+.|++. .++|+|+++++.++++| +++|+++|||||
T Consensus 628 ~~d~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpg 665 (765)
T 1ewq_A 628 ASDDLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVG 665 (765)
T ss_dssp C------------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTT
T ss_pred HHHHHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCC
Confidence 665442 15789999999999999 999999999999
Q ss_pred --CCCCCHHHH-HHHHHHHHHHHhCCCEEEEEecCCchHHHhhc
Q 046786 205 --TSGLDSTMA-KKILVSLSKLAEGGRTILMTIHQPASSLFYMF 245 (604)
Q Consensus 205 --tsgLD~~~~-~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~ 245 (604)
|++||..+. ..+++.|++ .|.|+|++||++. +..++
T Consensus 666 rGTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~--l~~~~ 704 (765)
T 1ewq_A 666 RGTSSLDGVAIATAVAEALHE---RRAYTLFATHYFE--LTALG 704 (765)
T ss_dssp TTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHH--HHTCC
T ss_pred CCCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHH--HHHhh
Confidence 999998875 578888876 5899999999953 34443
No 101
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.71 E-value=4.3e-19 Score=183.78 Aligned_cols=148 Identities=14% Similarity=0.150 Sum_probs=109.1
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--------hc--cccEEEEecCCCCCCCCCHHH
Q 046786 61 PGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--------EV--KRRTGFVAQNNVFYPHLTVAE 130 (604)
Q Consensus 61 ~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--------~~--~~~i~yv~Q~~~l~~~lTv~e 130 (604)
+|++++|+||||||||||+++|+|+++ |++|+|.++|.+... .+ ++.++|++|+..+.|.+|++|
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~-----~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~ 175 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ-----NLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYD 175 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH-----TTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-----hcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHH
Confidence 799999999999999999999999885 468999999998632 11 346999999998889899999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 046786 131 TLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDS 210 (604)
Q Consensus 131 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~ 210 (604)
++.++..... . ..+++..|+.+..+ +-++..++||++|||+|+.+|+.++| .||+
T Consensus 176 ~v~~~~~~~~--d----------~~llDt~G~~~~~~--------~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa 230 (304)
T 1rj9_A 176 AVQAMKARGY--D----------LLFVDTAGRLHTKH--------NLMEELKKVKRAIAKADPEEPKEVWL-----VLDA 230 (304)
T ss_dssp HHHHHHHHTC--S----------EEEECCCCCCTTCH--------HHHHHHHHHHHHHHHHCTTCCSEEEE-----EEET
T ss_pred HHHHHHhCCC--C----------EEEecCCCCCCchH--------HHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcH
Confidence 9987532110 0 01233344433222 12445558999999999999994444 4555
Q ss_pred HHHHHHHHHHHHHHhC-CCEEEEEecCCc
Q 046786 211 TMAKKILVSLSKLAEG-GRTILMTIHQPA 238 (604)
Q Consensus 211 ~~~~~i~~~l~~la~~-g~tvi~~~Hq~~ 238 (604)
.+..++++.++++.+. |.|+|++||+..
T Consensus 231 ~t~~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 231 VTGQNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp TBCTHHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 5556677778888764 899999999853
No 102
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.71 E-value=1.6e-20 Score=183.47 Aligned_cols=146 Identities=18% Similarity=0.199 Sum_probs=114.5
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCC--CCCCHHHHHHHHH
Q 046786 59 VSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFY--PHLTVAETLVFTA 136 (604)
Q Consensus 59 i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~--~~lTv~e~l~f~~ 136 (604)
.++|++++|+||||||||||+++|+|++. | .++|++|++.++ +.+|+.++..+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~-----~------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~ 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG-----E------------------RVALLPMDHYYKDLGHLPLEERLRVNY 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG-----G------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC-----C------------------CeEEEecCccccCcccccHHHhcCCCC
Confidence 57899999999999999999999999763 1 589999998776 5689988865431
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHH----HHHHHHHHHHhhCCCeEEEeCCCCC-----
Q 046786 137 LLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGE----RKRISIGQELLINPSLLFLDEPTSG----- 207 (604)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe----rqRvsia~~L~~~p~illLDEPtsg----- 207 (604)
..+. ....+++.+.++.+++.+..+. +...+|+|| +||+++|++++.+|+++++||||++
T Consensus 60 --~~~~----~~~~~~~~~~l~~~~~~~~~~~-----~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~ 128 (211)
T 3asz_A 60 --DHPD----AFDLALYLEHAQALLRGLPVEM-----PVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLK 128 (211)
T ss_dssp --TSGG----GBCHHHHHHHHHHHHTTCCEEE-----CCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEE
T ss_pred --CChh----hhhHHHHHHHHHHHHcCCCcCC-----CcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEE
Confidence 1111 1123456777888888765543 345789996 4788999999999999999999999
Q ss_pred --CCHHHHHHHHHHHHHH-HhCCCEEEEEecCCc
Q 046786 208 --LDSTMAKKILVSLSKL-AEGGRTILMTIHQPA 238 (604)
Q Consensus 208 --LD~~~~~~i~~~l~~l-a~~g~tvi~~~Hq~~ 238 (604)
||+.....+.+.+++. .+.|+|++.++|+..
T Consensus 129 i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 129 VFVDADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp EEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999886 456999999999743
No 103
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.70 E-value=1.6e-19 Score=186.92 Aligned_cols=157 Identities=17% Similarity=0.139 Sum_probs=87.8
Q ss_pred ccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcC-CCCCCCCccccEEEECCEeCChh-ccccEEEEecCCCCC
Q 046786 46 DEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGR-LSNGKDTVTQGHITYNGKQFSAE-VKRRTGFVAQNNVFY 123 (604)
Q Consensus 46 ~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~-~~~~~~~~~~G~I~~~G~~~~~~-~~~~i~yv~Q~~~l~ 123 (604)
.+++.+++++++++ +|+||||+|||||+|+|.|. .. |++| |.++|.++... ..+.++|++|++...
T Consensus 8 ~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~-----~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~ 75 (301)
T 2qnr_A 8 VHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY-----PERV-ISGAAEKIERTVQIEASTVEIEERGVK 75 (301)
T ss_dssp ----------CEEE------EEEEETTSSHHHHHHHHHC------------------------------CEEEEC---CC
T ss_pred ECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc-----CCCC-cccCCcccCCcceEeeEEEEecCCCcc
Confidence 34567999999998 99999999999999999997 43 5688 88888776432 235689999998888
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeC
Q 046786 124 PHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDE 203 (604)
Q Consensus 124 ~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDE 203 (604)
..+|+.|+..++.... ..+.....++.+. +..+ .+.+++|||||||+.+|++++ ++++||
T Consensus 76 ~~ltv~Dt~g~~~~~~-----~~e~~~~l~~~l~------~~~~-----~~~~~~sgg~rqrv~~ara~~----ll~lde 135 (301)
T 2qnr_A 76 LRLTVVDTPGYGDAIN-----CRDCFKTIISYID------EQFE-----RYLHDESGLNRRHIIDNRVHC----CFYFIS 135 (301)
T ss_dssp EEEEEEEEC----------------CTTHHHHHH------HHHH-----HHHHHHTSSCCTTCCCCCCCE----EEEEEC
T ss_pred cCcchhhhhhhhhhcC-----cHHHHHHHHHHHH------HHHH-----HHHHHhCHHhhhhhhhhhhhh----eeeeec
Confidence 8899999988754321 0011111122221 1122 345689999999999888875 999999
Q ss_pred CCC-CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCc
Q 046786 204 PTS-GLDSTMAKKILVSLSKLAEG-GRTILMTIHQPA 238 (604)
Q Consensus 204 Pts-gLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~ 238 (604)
||+ |||+... +.++++.+. +.++|++.||..
T Consensus 136 Pt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 136 PFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp SSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred CcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 998 5999873 666677654 789999999964
No 104
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.68 E-value=4.3e-18 Score=196.80 Aligned_cols=157 Identities=17% Similarity=0.102 Sum_probs=108.9
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLT 127 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lT 127 (604)
++.+++|+|+. ++|++++|+||||||||||||+|+|.... ...| ..+.. .+..++++.| +++.++
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~----~q~G------~~vpa-~~~~i~~~~~---i~~~~~ 658 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALM----AYIG------SYVPA-QKVEIGPIDR---IFTRVG 658 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHH----HTTT------CCBSS-SEEEECCCCE---EEEEEC
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHH----HhcC------cccch-hcccceeHHH---HHhhCC
Confidence 45799999999 99999999999999999999999996421 1122 11211 1234666655 455566
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 046786 128 VAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSG 207 (604)
Q Consensus 128 v~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsg 207 (604)
+.|++..+ .+.+|+|+++ +..+..++++|+++|||||++|
T Consensus 659 ~~d~l~~~---------------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~G 698 (800)
T 1wb9_A 659 AADDLASG---------------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRG 698 (800)
T ss_dssp --------------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCC
T ss_pred HHHHHHhh---------------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCC
Confidence 66654321 1145666654 4555567899999999999999
Q ss_pred CCHHHHHHH-HHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecC
Q 046786 208 LDSTMAKKI-LVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGK 262 (604)
Q Consensus 208 LD~~~~~~i-~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~ 262 (604)
+|+.....+ ...++.+++ .|.++|++||++. +..++|++..+ .+|++.+...
T Consensus 699 td~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v-~n~~~~~~~~ 752 (800)
T 1wb9_A 699 TSTYDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGV-ANVHLDALEH 752 (800)
T ss_dssp SSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTE-EEEEEEEEEE
T ss_pred CChhHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhce-EEEEEEEEEc
Confidence 999887775 788888987 4999999999974 45678877666 6777766543
No 105
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.68 E-value=1.9e-19 Score=173.93 Aligned_cols=156 Identities=18% Similarity=0.206 Sum_probs=103.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--hccccEEEEecCCCCCCCCCHHHHHHHHHHhc
Q 046786 62 GELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--EVKRRTGFVAQNNVFYPHLTVAETLVFTALLR 139 (604)
Q Consensus 62 Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~ 139 (604)
|++++|+||||||||||+++|+|.++ ++| |.++|.+... ..++.+||++|+. .... +++ +++.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~------~~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l---~~~~ 65 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK------SSG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPL---SRVG 65 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH------HTT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEE---EECC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc------cCC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehh---hccc
Confidence 78999999999999999999999873 478 8898877643 4567899999975 1111 111 1111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCcCHHHHHHH-HHHH---HHhhCCCeEEEeC--CCCCCCHHH
Q 046786 140 LPNSLKREEKVLHAEAVINQLGLA-RCRNSIIGGRLVRGLSGGERKRI-SIGQ---ELLINPSLLFLDE--PTSGLDSTM 212 (604)
Q Consensus 140 ~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv-sia~---~L~~~p~illLDE--PtsgLD~~~ 212 (604)
. +.. ...+..+| ++...+|+|||+++ ++++ |++.+|+++++|| |+..+|...
T Consensus 66 ~--------------------~~~~~~~~~~v~-~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~ 124 (189)
T 2i3b_A 66 L--------------------EPPPGKRECRVG-QYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLF 124 (189)
T ss_dssp C--------------------CCCSSSCCEESS-SSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHH
T ss_pred c--------------------cCCccccccccc-eEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHH
Confidence 0 001 01122444 44567999999988 4444 5789999999999 899999865
Q ss_pred HHHHHHHHHHHHhCCCEEEE----EecCCchHHHhhcCeEEEEecCCeEEEec
Q 046786 213 AKKILVSLSKLAEGGRTILM----TIHQPASSLFYMFNKILLLSSDGSSLYFG 261 (604)
Q Consensus 213 ~~~i~~~l~~la~~g~tvi~----~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G 261 (604)
++.|+++.+...++|+ ++|+.+ ..+.|++..+ .+|+++...
T Consensus 125 ----~~~l~~~l~~~~~~ilgti~vsh~~~---~~~vd~i~~~-~~~~i~~~~ 169 (189)
T 2i3b_A 125 ----IQAVRQTLSTPGTIILGTIPVPKGKP---LALVEEIRNR-KDVKVFNVT 169 (189)
T ss_dssp ----HHHHHHHHHCSSCCEEEECCCCCSSC---CTTHHHHHTT-CCSEEEECC
T ss_pred ----HHHHHHHHhCCCcEEEEEeecCCCCc---hHHHHHHeec-CCcEEEEeC
Confidence 4445555444455553 238863 2455666666 677777644
No 106
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.67 E-value=9.6e-17 Score=163.87 Aligned_cols=151 Identities=15% Similarity=0.163 Sum_probs=106.8
Q ss_pred EEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHH
Q 046786 58 AVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTVAETLVFTAL 137 (604)
Q Consensus 58 ~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~ 137 (604)
-+++|++++|+||||||||||++.+++... .|++ +.|.+... ...+.|+..++.. ..+.+.+. .
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-------~g~~-~~g~~~~~--~~~v~~~~~e~~~---~~~~~r~~---~ 89 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-------GGPD-LLEVGELP--TGPVIYLPAEDPP---TAIHHRLH---A 89 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-------TCCC-TTCCCCCC--CCCEEEEESSSCH---HHHHHHHH---H
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-------cCCC-cCCCccCC--CccEEEEECCCCH---HHHHHHHH---H
Confidence 489999999999999999999999998653 4555 33444321 3457888776532 01112211 1
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCC--CCCHHHH--
Q 046786 138 LRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTS--GLDSTMA-- 213 (604)
Q Consensus 138 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPts--gLD~~~~-- 213 (604)
+. ..... ...+++++.+++.+..+ ..+..+|+||++++ ++++.+|+++++||||+ ++|....
T Consensus 90 ~g--~~~~~----~~~~~~~~~l~l~~~~~-----~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~ 155 (279)
T 1nlf_A 90 LG--AHLSA----EERQAVADGLLIQPLIG-----SLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGP 155 (279)
T ss_dssp HH--TTSCH----HHHHHHHHHEEECCCTT-----SCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHH
T ss_pred HH--hhcCh----hhhhhccCceEEeecCC-----CCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHH
Confidence 11 11222 23566788888876554 45678999998875 68889999999999999 9998544
Q ss_pred -HHHHHHHHHHHh-CCCEEEEEecCCc
Q 046786 214 -KKILVSLSKLAE-GGRTILMTIHQPA 238 (604)
Q Consensus 214 -~~i~~~l~~la~-~g~tvi~~~Hq~~ 238 (604)
..+++.|+++++ .|.|||+++|+..
T Consensus 156 ~~~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 156 MAQVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHHHHcCCEEEEEecCCC
Confidence 888999999975 5999999999964
No 107
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.67 E-value=1.3e-18 Score=183.86 Aligned_cols=165 Identities=21% Similarity=0.208 Sum_probs=105.1
Q ss_pred eeece-EEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccc----cE-EEECCEeCChhccccEEEEecCCCCCC
Q 046786 51 ILKGV-SGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQ----GH-ITYNGKQFSAEVKRRTGFVAQNNVFYP 124 (604)
Q Consensus 51 iL~~v-s~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~----G~-I~~~G~~~~~~~~~~i~yv~Q~~~l~~ 124 (604)
.|+++ ++.+++|++++|+||||||||||++.|++.... +|++ |+ |++++.+.. .++++++++|+..+++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~---~~~~Gg~~G~vi~i~~e~~~--~~~~i~~i~q~~~~~~ 193 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQL---PPEEGGLNGSVIWIDTENTF--RPERIREIAQNRGLDP 193 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTS---CGGGTSCSCEEEEEESSSCC--CHHHHHHHHHTTTCCH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcc---chhcCCCCCeEEEEeCCCCC--CHHHHHHHHHHcCCCH
Confidence 45665 689999999999999999999999999997621 1344 67 888886541 1345666777655443
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHh-------hCCC
Q 046786 125 HLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELL-------INPS 197 (604)
Q Consensus 125 ~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~-------~~p~ 197 (604)
. ++.||+.+.. .. -|.+++|++.++++++ .+|+
T Consensus 194 ~-~v~~ni~~~~------~~---------------------------------~~~~~~~~l~~~~~~~~~lS~G~~~~~ 233 (349)
T 1pzn_A 194 D-EVLKHIYVAR------AF---------------------------------NSNHQMLLVQQAEDKIKELLNTDRPVK 233 (349)
T ss_dssp H-HHGGGEEEEE------CC---------------------------------SHHHHHHHHHHHHHHHHHSSSSSSCEE
T ss_pred H-HHhhCEEEEe------cC---------------------------------ChHHHHHHHHHHHHHHHHhccccCCCC
Confidence 3 4444432210 00 1345666666666666 6899
Q ss_pred eEEEeCCCCCCCHHH------------HHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecC
Q 046786 198 LLFLDEPTSGLDSTM------------AKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGK 262 (604)
Q Consensus 198 illLDEPtsgLD~~~------------~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~ 262 (604)
++++||||+++|+.. ...+++.|+++++ .|.|||+++|... .....+++.... .+|+++.++.
T Consensus 234 llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~-~~G~~l~~~~ 309 (349)
T 1pzn_A 234 LLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRP-IGGHILAHSA 309 (349)
T ss_dssp EEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-----------------CCCCCTTC
T ss_pred EEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCcccc-CCcceEeecC
Confidence 999999999999852 3567777788776 5899999999864 343344555555 5676665543
No 108
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.66 E-value=5.8e-18 Score=166.45 Aligned_cols=164 Identities=15% Similarity=0.144 Sum_probs=109.6
Q ss_pred cceeeceEE-EEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh-hcc---ccEEEEecCCCCC
Q 046786 49 KMILKGVSG-AVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA-EVK---RRTGFVAQNNVFY 123 (604)
Q Consensus 49 ~~iL~~vs~-~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~-~~~---~~i~yv~Q~~~l~ 123 (604)
...|+++.+ .+++|++++|+||||||||||++.|++... +.+|.+.+.+.+... ... +.+++.+|+....
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL-----RDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK 83 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH-----HHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH-----HCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC
Confidence 456888885 899999999999999999999999998653 235677665544321 111 1122222211000
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCC--eEEE
Q 046786 124 PHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPS--LLFL 201 (604)
Q Consensus 124 ~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~--illL 201 (604)
.+++ ++.....++ .. ......|.+|.++...+.....+|+ ++++
T Consensus 84 -~~~~------------------------~~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~llil 129 (235)
T 2w0m_A 84 -KLII------------------------IDALMKEKE-DQ--------WSLVNLTPEELVNKVIEAKQKLGYGKARLVI 129 (235)
T ss_dssp -TEEE------------------------EECCC-----CT--------TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred -CEEE------------------------EeccccccC-ce--------eeecCCCHHHHHHHHHHHHHhhCCCceEEEE
Confidence 0000 000000000 00 0112459999998888877788999 9999
Q ss_pred eCCCCCC--CHHHHHHHHHHHHHHHh-CCCEEEEEecCCc-------hHHHhhcCeEEEE
Q 046786 202 DEPTSGL--DSTMAKKILVSLSKLAE-GGRTILMTIHQPA-------SSLFYMFNKILLL 251 (604)
Q Consensus 202 DEPtsgL--D~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~-------~~i~~~~d~v~ll 251 (604)
||||+++ |+....++++.|+++++ .|.|||+++|+.. ..+.+.+|++++|
T Consensus 130 De~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l 189 (235)
T 2w0m_A 130 DSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRF 189 (235)
T ss_dssp ETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEE
T ss_pred ECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEE
Confidence 9999887 99999999999999975 5999999999973 3478889999999
No 109
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.64 E-value=3.8e-17 Score=172.71 Aligned_cols=124 Identities=23% Similarity=0.317 Sum_probs=90.3
Q ss_pred EEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCcc-ccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHH
Q 046786 58 AVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVT-QGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTVAETLVFTA 136 (604)
Q Consensus 58 ~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~-~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~ 136 (604)
...+|++++|+|||||||||||++|+|.++ ++ +|.|...+.++....+...++++|.......+|..+
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~-----~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~------ 187 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLN-----NTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSE------ 187 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHH-----HHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHH------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhccc-----CCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHH------
Confidence 678999999999999999999999999875 33 466655444443233334456666433222222111
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 046786 137 LLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKI 216 (604)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i 216 (604)
+||++|..+|++|++|||| |..+
T Consensus 188 --------------------------------------------------~La~aL~~~PdvillDEp~---d~e~---- 210 (356)
T 3jvv_A 188 --------------------------------------------------ALRSALREDPDIILVGEMR---DLET---- 210 (356)
T ss_dssp --------------------------------------------------HHHHHTTSCCSEEEESCCC---SHHH----
T ss_pred --------------------------------------------------HHHHHhhhCcCEEecCCCC---CHHH----
Confidence 9999999999999999999 6554
Q ss_pred HHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEE
Q 046786 217 LVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLL 251 (604)
Q Consensus 217 ~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll 251 (604)
.+.+.++++.|++|++|+|+.+. . ..+||++.|
T Consensus 211 ~~~~~~~~~~G~~vl~t~H~~~~-~-~~~dRli~l 243 (356)
T 3jvv_A 211 IRLALTAAETGHLVFGTLHTTSA-A-KTIDRVVDV 243 (356)
T ss_dssp HHHHHHHHHTTCEEEEEESCSSH-H-HHHHHHHHT
T ss_pred HHHHHHHHhcCCEEEEEEccChH-H-HHHHHHhhh
Confidence 44555557779999999999863 3 788999888
No 110
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.64 E-value=5.2e-18 Score=191.60 Aligned_cols=165 Identities=15% Similarity=0.189 Sum_probs=110.9
Q ss_pred EEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCC-------hhccccEEEEecCCCCCCCCCHHHHHHHHHH
Q 046786 65 LAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS-------AEVKRRTGFVAQNNVFYPHLTVAETLVFTAL 137 (604)
Q Consensus 65 ~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~-------~~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~ 137 (604)
++|+|||||||||||++|+|+..| +++|.|+++|.++. ..+++.+||++|+..+++.+||+|++.+...
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P----~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~ 123 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALP----RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQN 123 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC-----------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCC----CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHH
Confidence 999999999999999999999742 26899999998852 2467789999999999999999999987643
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCC------CCCCCHH
Q 046786 138 LRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEP------TSGLDST 211 (604)
Q Consensus 138 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEP------tsgLD~~ 211 (604)
...... .++.. +++.++.+...+|+++++||| |+|||+.
T Consensus 124 ~~~~~~----------------~~~s~-------------------~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~ 168 (608)
T 3szr_A 124 AIAGEG----------------MGISH-------------------ELITLEISSRDVPDLTLIDLPGITRVAVGNQPAD 168 (608)
T ss_dssp HHHCSS----------------SCCCS-------------------CCEEEEEEESSSCCEEEEECCC------CCSSCS
T ss_pred HhcCCc----------------cccch-------------------HHHHHHhcCCCCCceeEeeCCCccccccCCCCHH
Confidence 210000 01110 111122222358999999999 9999999
Q ss_pred HHHHHHHHHHHHHh--CCCEEEEEecCCc------hHHHhhc-----CeEEEEecCCeEEEecChhhHHHH
Q 046786 212 MAKKILVSLSKLAE--GGRTILMTIHQPA------SSLFYMF-----NKILLLSSDGSSLYFGKGEDVINY 269 (604)
Q Consensus 212 ~~~~i~~~l~~la~--~g~tvi~~~Hq~~------~~i~~~~-----d~v~ll~~~G~~v~~G~~~~~~~~ 269 (604)
....+.++++++.+ .+.++++++|+.. ..+.... ..++++ .++..+..|+.+++.+.
T Consensus 169 ~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~Vl-TK~Dlv~~g~~~~~~~~ 238 (608)
T 3szr_A 169 IGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGIL-TKPDLVDKGTEDKVVDV 238 (608)
T ss_dssp HHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEE-ECGGGSSSSSTTCCCCC
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEe-cchhhcCcccHHHHHHH
Confidence 99999999999754 3678899999864 1222222 235666 78888877776555443
No 111
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.59 E-value=3e-17 Score=162.17 Aligned_cols=152 Identities=21% Similarity=0.213 Sum_probs=103.2
Q ss_pred eEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCH----HH
Q 046786 55 VSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTV----AE 130 (604)
Q Consensus 55 vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv----~e 130 (604)
-.-..++|++++|+||||||||||+|+|+|+.++. +.+|.|.+.+++.....++.++|++|++..|+.+|+ .|
T Consensus 9 ~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~---~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E 85 (219)
T 1s96_A 9 HHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY---DTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLE 85 (219)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHSCTT---TEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred ccccCCCCcEEEEECCCCCCHHHHHHHHhccCCCC---ceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHH
Confidence 34567999999999999999999999999987521 258999999987654445678999997655544333 22
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 046786 131 TLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDS 210 (604)
Q Consensus 131 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~ 210 (604)
++.+. |+ ..+.| +++ +.+++..+++++|| ||+
T Consensus 86 ~~~~~-----------------------------------~~--~yg~~---~~~---v~~~l~~G~illLD-----LD~ 117 (219)
T 1s96_A 86 HAEVF-----------------------------------GN--YYGTS---REA---IEQVLATGVDVFLD-----IDW 117 (219)
T ss_dssp EEEET-----------------------------------TE--EEEEE---HHH---HHHHHTTTCEEEEE-----CCH
T ss_pred HHHHH-----------------------------------hc--cCCCC---HHH---HHHHHhcCCeEEEE-----ECH
Confidence 21110 00 00112 121 34556668999999 999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHHHHHHh
Q 046786 211 TMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVINYFAG 272 (604)
Q Consensus 211 ~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~~~f~~ 272 (604)
.++..+.+.+. +++||++++|++. ++.. ++ + .+| .++++++...+..
T Consensus 118 ~~~~~i~~~l~----~~~tI~i~th~~~-~l~~---Rl--~-~rG----~~~~e~i~~rl~~ 164 (219)
T 1s96_A 118 QGAQQIRQKMP----HARSIFILPPSKI-ELDR---RL--R-GRG----QDSEEVIAKRMAQ 164 (219)
T ss_dssp HHHHHHHHHCT----TCEEEEEECSSHH-HHHH---HH--H-TTS----CSCHHHHHHHHHH
T ss_pred HHHHHHHHHcc----CCEEEEEECCCHH-HHHH---HH--H-HcC----CCCHHHHHHHHHH
Confidence 99999999876 5899999999975 3333 32 5 677 6788888766543
No 112
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.59 E-value=2.7e-17 Score=159.53 Aligned_cols=168 Identities=16% Similarity=0.067 Sum_probs=95.3
Q ss_pred ceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCC----CCC
Q 046786 50 MILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVF----YPH 125 (604)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l----~~~ 125 (604)
.++++ +.+++|+.++|+|+||||||||+|.|+|........|+.|.+.+.+.-. ....+-. .+.+-+ .+.
T Consensus 16 ~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~---~~~~~~l-~Dt~G~~~~~~~~ 89 (210)
T 1pui_A 16 PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFE---VADGKRL-VDLPGYGYAEVPE 89 (210)
T ss_dssp SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEE---EETTEEE-EECCCCC------
T ss_pred CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEE---ecCCEEE-EECcCCcccccCH
Confidence 47787 8899999999999999999999999999761111124566654322100 0000111 111100 000
Q ss_pred CC---HHHHHHHHHHh-cC----------CCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHH-HHHHH
Q 046786 126 LT---VAETLVFTALL-RL----------PNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKR-ISIGQ 190 (604)
Q Consensus 126 lT---v~e~l~f~~~~-~~----------~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR-vsia~ 190 (604)
-. .+..+...... +. ....+. ..+.+.+.++..++... .++ .+...+|+||||| +..++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~--~~~~~~~~~~~~~~~~~---~v~-nK~D~~s~~~~~~~~~~~~ 163 (210)
T 1pui_A 90 EMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD--LDQQMIEWAVDSNIAVL---VLL-TKADKLASGARKAQLNMVR 163 (210)
T ss_dssp CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHHHTTCCEE---EEE-ECGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCch--hHHHHHHHHHHcCCCeE---EEE-ecccCCCchhHHHHHHHHH
Confidence 00 11112111110 00 011122 12245556666676532 123 2345799999999 89999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 046786 191 ELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRT 229 (604)
Q Consensus 191 ~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~t 229 (604)
+++.+|+++++|||||++|.....++++.|.++.++|.|
T Consensus 164 ~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 164 EAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp HHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred HHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999998876654
No 113
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.56 E-value=1.6e-16 Score=171.03 Aligned_cols=153 Identities=16% Similarity=0.127 Sum_probs=92.2
Q ss_pred ccccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCC
Q 046786 46 DEEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPH 125 (604)
Q Consensus 46 ~~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~ 125 (604)
++++.+++|+|++| +|+||||||||||+|+|+|...+. +..|.+.+++.+ ....+.++|++|++.+++.
T Consensus 21 y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~---~~~~~~~~~~~~--t~~~~~i~~v~q~~~~~~~ 89 (418)
T 2qag_C 21 VYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYS---PEYPGPSHRIKK--TVQVEQSKVLIKEGGVQLL 89 (418)
T ss_dssp TTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCC---CCCCSCC-------CCEEEEEECC------CEE
T ss_pred ECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCC---CCCCCcccCCcc--ceeeeeEEEEEecCCcccc
Confidence 45577999999998 999999999999999999986421 112222222211 1123568999999888888
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCC---eEEEe
Q 046786 126 LTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPS---LLFLD 202 (604)
Q Consensus 126 lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~---illLD 202 (604)
+||.||+.++.... ..+..+.+.+.++ ..++.+++||+.||++++.+|+ ++++|
T Consensus 90 Ltv~Dt~g~~~~~~------~~~~~~~i~~~i~-----------------~~~~~~l~qr~~IaRal~~d~~~~vlL~ld 146 (418)
T 2qag_C 90 LTIVDTPGFGDAVD------NSNCWQPVIDYID-----------------SKFEDYLNAESRVNRRQMPDNRVQCCLYFI 146 (418)
T ss_dssp EEEEECC-----------------CHHHHHHHH-----------------HHHHHHTTTSCC-CCCCCCCC-CCEEEEEC
T ss_pred eeeeechhhhhhcc------chhhHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhccCCCeeEEEEEe
Confidence 99999998764321 1111111222221 1455677889999999999999 99999
Q ss_pred CCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 046786 203 EPT-SGLDSTMAKKILVSLSKLAEGGRTILMTIHQP 237 (604)
Q Consensus 203 EPt-sgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~ 237 (604)
||| +|||+... +.++++.. +.+||+++|..
T Consensus 147 ePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK~ 177 (418)
T 2qag_C 147 APSGHGLKPLDI----EFMKRLHE-KVNIIPLIAKA 177 (418)
T ss_dssp CC-CCSCCHHHH----HHHHHHTT-TSEEEEEEEST
T ss_pred cCcccCCCHHHH----HHHHHHhc-cCcEEEEEEcc
Confidence 999 69998773 44555554 77888888753
No 114
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.55 E-value=3.1e-18 Score=164.26 Aligned_cols=170 Identities=15% Similarity=0.096 Sum_probs=113.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCC
Q 046786 62 GELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLP 141 (604)
Q Consensus 62 Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~ 141 (604)
|++++|+||||||||||+++|++. .+|.+.++|.++... ...++++|.....+..|+++++.+.+.....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~--------~~g~~~i~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 71 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ--------LDNSAYIEGDIINHM--VVGGYRPPWESDELLALTWKNITDLTVNFLL 71 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH--------SSSEEEEEHHHHHTT--CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc--------cCCeEEEcccchhhh--hccccccCccchhHHHHHHHHHHHHHHHHHh
Confidence 689999999999999999999973 268899998764321 2356777765444556788888765432100
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccccccccC---ccCCCc--CHHHHHHHHHHH------HHhhCCCeEEEeCCCCCCCH
Q 046786 142 NSLKREEKVLHAEAVINQLGLARCRNSIIGG---RLVRGL--SGGERKRISIGQ------ELLINPSLLFLDEPTSGLDS 210 (604)
Q Consensus 142 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~---~~~~~L--SgGerqRvsia~------~L~~~p~illLDEPtsgLD~ 210 (604)
-+-....+...+. +..+.+ |+|++||+.++. +++.+|+...+|+ |||+
T Consensus 72 ------------------~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~ 130 (189)
T 2bdt_A 72 ------------------AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGE 130 (189)
T ss_dssp ------------------TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CG
T ss_pred ------------------cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCH
Confidence 0000011110000 112234 888888888888 9999999888884 8999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecC-CchHHHhhcCeEEEEecCCeEEEecChhhHH
Q 046786 211 TMAKKILVSLSKLAEGGRTILMTIHQ-PASSLFYMFNKILLLSSDGSSLYFGKGEDVI 267 (604)
Q Consensus 211 ~~~~~i~~~l~~la~~g~tvi~~~Hq-~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~ 267 (604)
..... .+.++.+.+.+.+||.++|+ +. ++.+.+|+++ ++|+++..|+++-+.
T Consensus 131 ~~~~~-~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~---~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 131 RCLEL-VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK---TNPRFIFCMAGDPLE 183 (189)
T ss_dssp GGGHH-HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH---HCGGGSCC-------
T ss_pred HHHHH-HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh---hCCcEEEeecCCchh
Confidence 88888 88888887668899999998 75 5778899988 689999999887554
No 115
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.55 E-value=1.3e-17 Score=159.81 Aligned_cols=153 Identities=14% Similarity=0.103 Sum_probs=98.3
Q ss_pred EEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--hccccEEEEecCCCCCCCCCHHHHHHHH
Q 046786 58 AVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--EVKRRTGFVAQNNVFYPHLTVAETLVFT 135 (604)
Q Consensus 58 ~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--~~~~~i~yv~Q~~~l~~~lTv~e~l~f~ 135 (604)
.+++|++++|+||||||||||+++|+|.. ..|.|.++|.++.. ..++.++|++|+.. +.+||.|++.+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~-------~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~ 75 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLP-------GVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADV 75 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCS-------SSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhcc-------CCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHH
Confidence 36799999999999999999999999973 27999999976532 12234678888654 457899998775
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHH
Q 046786 136 ALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKK 215 (604)
Q Consensus 136 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~ 215 (604)
+......... ..++.+++..++..... . +..+..+|+|++||+.++|++..+|+++ +|+.....
T Consensus 76 ~~~~~~~~~~-----~~~~~~~~~~~l~~~~~--~-~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~ 139 (191)
T 1zp6_A 76 AGRYAKEGYF-----VILDGVVRPDWLPAFTA--L-ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVAD 139 (191)
T ss_dssp HHHHHHTSCE-----EEECSCCCTTTTHHHHT--T-CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHH
T ss_pred HHHHhccCCe-----EEEeccCcHHHHHHHHh--c-CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHH
Confidence 4321000000 00011111111211110 0 1224579999999999999999999876 68887777
Q ss_pred HHHHHHHHHhCCCEEEEEec
Q 046786 216 ILVSLSKLAEGGRTILMTIH 235 (604)
Q Consensus 216 i~~~l~~la~~g~tvi~~~H 235 (604)
+.+.++.+.+.+..+|.++|
T Consensus 140 ~~~~~~~l~~~~~~~i~t~~ 159 (191)
T 1zp6_A 140 LHSQFADLGAFEHHVLPVSG 159 (191)
T ss_dssp HHHHTTCCGGGGGGEEECTT
T ss_pred HHHHHhccCcccccEEECCC
Confidence 77777666443334444444
No 116
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.53 E-value=1.1e-17 Score=167.66 Aligned_cols=153 Identities=20% Similarity=0.244 Sum_probs=103.6
Q ss_pred cCeEEEEECCCCCcHHHHHHHHH---cCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHH
Q 046786 61 PGELLAILGPSGCGKTTLLTALG---GRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTVAETLVFTAL 137 (604)
Q Consensus 61 ~Ge~~aIlGpsGaGKSTLL~~L~---g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~ 137 (604)
++++++|+||||||||||+++|+ |... +++|+|.++|.+......+.+.+++|+..+++..|+.|++.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~-----~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~ 100 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH-----LSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELE 100 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC-----EEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE-----ecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999 9764 578999888765432333445667888888888899999987542
Q ss_pred hcCC-----CCCCHHHHHHHHHHHHHHcCCC--ccc-------cccccCccCCCcCHHHHHHHHHHHHH-hhCCCeEEEe
Q 046786 138 LRLP-----NSLKREEKVLHAEAVINQLGLA--RCR-------NSIIGGRLVRGLSGGERKRISIGQEL-LINPSLLFLD 202 (604)
Q Consensus 138 ~~~~-----~~~~~~~~~~~v~~~l~~lgL~--~~~-------~~~vg~~~~~~LSgGerqRvsia~~L-~~~p~illLD 202 (604)
.... ...+... ..++.+.+..... -.. -..+.++.+..+|| |+ ++| +.+|++++||
T Consensus 101 ~~~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD 171 (246)
T 2bbw_A 101 NRRGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGID 171 (246)
T ss_dssp TCTTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBC
T ss_pred hcCCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccc
Confidence 1000 0111111 1122222111111 000 01122345668998 66 677 9999999999
Q ss_pred ----CCCCCCCHHHHHHHHHHHHHHHhCC
Q 046786 203 ----EPTSGLDSTMAKKILVSLSKLAEGG 227 (604)
Q Consensus 203 ----EPtsgLD~~~~~~i~~~l~~la~~g 227 (604)
|||+|||..+...+.+.++++.+++
T Consensus 172 ~~~~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 172 DVTGEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp TTTCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred cccccccccCCCCcHHHHHHHHHHHHHhH
Confidence 9999999999999999999987654
No 117
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.52 E-value=7.8e-15 Score=143.13 Aligned_cols=152 Identities=22% Similarity=0.235 Sum_probs=98.7
Q ss_pred ceeeceE-EEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCH
Q 046786 50 MILKGVS-GAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTV 128 (604)
Q Consensus 50 ~iL~~vs-~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv 128 (604)
..|+++. +-+++|++++|.||||||||||++.|++ .. .+.+ .|+..++. .+.
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~------~~~v---------------~~i~~~~~----~~~ 59 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LS------GKKV---------------AYVDTEGG----FSP 59 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HH------CSEE---------------EEEESSCC----CCH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--Hc------CCcE---------------EEEECCCC----CCH
Confidence 3566666 4799999999999999999999999998 21 2222 23332221 111
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHH--HHHHHHHHHHhhC-CCeEEEeCCC
Q 046786 129 AETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGE--RKRISIGQELLIN-PSLLFLDEPT 205 (604)
Q Consensus 129 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe--rqRvsia~~L~~~-p~illLDEPt 205 (604)
. .+.-... .. .... +++++.+.+ ...|+++ ++++..+++++.+ |+++++||||
T Consensus 60 ~-~~~~~~~-~~--~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 60 E-RLVQMAE-TR--GLNP-------EEALSRFIL-------------FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp H-HHHHHHH-TT--TCCH-------HHHHHHEEE-------------ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCC
T ss_pred H-HHHHHHH-hc--CCCh-------HHHhhcEEE-------------EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcH
Confidence 1 1111010 00 1111 122232211 1344443 5688888899986 9999999999
Q ss_pred CCCCHHH--------HHHHHHHHHHHHhC-CCEEEEEecCCch------------HHHhhcCeEEEEe
Q 046786 206 SGLDSTM--------AKKILVSLSKLAEG-GRTILMTIHQPAS------------SLFYMFNKILLLS 252 (604)
Q Consensus 206 sgLD~~~--------~~~i~~~l~~la~~-g~tvi~~~Hq~~~------------~i~~~~d~v~ll~ 252 (604)
+++|+.. ..++++.|++++++ |.|||+++|.... .+.+.+|.+++|.
T Consensus 116 ~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~ 183 (220)
T 2cvh_A 116 AHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLD 183 (220)
T ss_dssp CCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEE
T ss_pred HHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEE
Confidence 9999733 35567778888764 8999999997542 4678899999994
No 118
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.52 E-value=2.8e-14 Score=135.55 Aligned_cols=91 Identities=19% Similarity=0.268 Sum_probs=72.7
Q ss_pred ccCCCcCHHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeE
Q 046786 173 RLVRGLSGGERKRISIGQELLI----NPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKI 248 (604)
Q Consensus 173 ~~~~~LSgGerqRvsia~~L~~----~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v 248 (604)
+.+..||||||||++||++|+. +|++++|||||+|||+.+...+.+.|+++++ +.++|+++|++ .+...+|++
T Consensus 60 ~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i 136 (173)
T 3kta_B 60 KRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKI 136 (173)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEE
T ss_pred cccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEE
Confidence 3467899999999999999975 4699999999999999999999999999875 46899999995 467899999
Q ss_pred EEEe-cCCeE-EEecChhhH
Q 046786 249 LLLS-SDGSS-LYFGKGEDV 266 (604)
Q Consensus 249 ~ll~-~~G~~-v~~G~~~~~ 266 (604)
+.+. .+|.. +...+.++.
T Consensus 137 ~~v~~~~g~s~~~~~~~~~~ 156 (173)
T 3kta_B 137 IGVSMRDGVSKVVSLSLEKA 156 (173)
T ss_dssp EEEEEETTEEEEEECCHHHH
T ss_pred EEEEecCCEEEEEEEEcHHH
Confidence 8762 34542 333444443
No 119
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.52 E-value=3.1e-15 Score=159.23 Aligned_cols=129 Identities=20% Similarity=0.317 Sum_probs=97.2
Q ss_pred eeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCcc-ccEEEECCEeCChhccccEEEEecCCCCCCCCCHH
Q 046786 51 ILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVT-QGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTVA 129 (604)
Q Consensus 51 iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~-~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~ 129 (604)
+|++++ +++|++++|+|||||||||||++|+|.++ ++ +|+|.+.|.++....++.++||+|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~-----~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~--------- 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN-----QTKSYHIITIEDPIEYVFKHKKSIVNQRE--------- 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH-----HHSCCEEEEEESSCCSCCCCSSSEEEEEE---------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC-----cCCCcEEEEecccHhhhhccCceEEEeee---------
Confidence 456665 78999999999999999999999999875 44 79998877666434556788898841
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q 046786 130 ETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLD 209 (604)
Q Consensus 130 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD 209 (604)
+|+. +..+ +.+|+++|..+|+++++|||+ |
T Consensus 191 ------------------------------~g~~-----------~~~~------~~~l~~~L~~~pd~illdE~~---d 220 (372)
T 2ewv_A 191 ------------------------------VGED-----------TKSF------ADALRAALREDPDVIFVGEMR---D 220 (372)
T ss_dssp ------------------------------BTTT-----------BSCS------HHHHHHHTTSCCSEEEESCCC---S
T ss_pred ------------------------------cCCC-----------HHHH------HHHHHHHhhhCcCEEEECCCC---C
Confidence 2221 1134 469999999999999999999 7
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEE
Q 046786 210 STMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLL 251 (604)
Q Consensus 210 ~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll 251 (604)
+.+... .++. +..|.+|+.|+|+.+ +...+|+++.|
T Consensus 221 ~e~~~~---~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l 256 (372)
T 2ewv_A 221 LETVET---ALRA-AETGHLVFGTLHTNT--AIDTIHRIVDI 256 (372)
T ss_dssp HHHHHH---HHHH-HTTTCEEEECCCCCS--HHHHHHHHHHT
T ss_pred HHHHHH---HHHH-HhcCCEEEEEECcch--HHHHHHHHHHh
Confidence 765443 3433 356899999999954 56677777655
No 120
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.50 E-value=8.7e-15 Score=154.13 Aligned_cols=141 Identities=21% Similarity=0.166 Sum_probs=98.4
Q ss_pred eeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEEC-CEeCChhccccEEEEecCCCCCCCCCHH
Q 046786 51 ILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYN-GKQFSAEVKRRTGFVAQNNVFYPHLTVA 129 (604)
Q Consensus 51 iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~-G~~~~~~~~~~i~yv~Q~~~l~~~lTv~ 129 (604)
-+++++.. .+|++++|+||||||||||+|+|+|... .+++|+|.++ |+......++.+++++|+..++++.||+
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~----~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQN----EILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSS----CCCCC-------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhcccc----ccccCCccccCCCCccceEEEEEEEECCCCEecCcccHH
Confidence 45666654 4899999999999999999999999874 1468999987 7665444556799999999899888998
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q 046786 130 ETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLD 209 (604)
Q Consensus 130 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD 209 (604)
|+. + ...+.++..+.+.++++.+|+.+..| ....++| ||+||++||+++ ++
T Consensus 280 e~~-------l-~~l~~~e~~~~~~e~l~~~gl~~f~~-----~~~~~lS-G~~~r~ala~gl---------------i~ 330 (358)
T 2rcn_A 280 EFG-------L-WHLEPEQITQGFVEFHDYLGHCKYRD-----CKHDADP-GCAIREAVENGA---------------IA 330 (358)
T ss_dssp TCC-------C-CCCCHHHHHHTSGGGGGGTTCSSSTT-----CCSSSCT-TCHHHHHHHHTS---------------SC
T ss_pred Hhh-------h-cCCCHHHHHHHHHHHHHHcCCchhcC-----CCcccCC-HHHHHHHHHhcC---------------CC
Confidence 831 1 13455666667888999999987776 4456899 999999999764 34
Q ss_pred HHHHHHHHHHHHHHHh
Q 046786 210 STMAKKILVSLSKLAE 225 (604)
Q Consensus 210 ~~~~~~i~~~l~~la~ 225 (604)
+.-.....++++++++
T Consensus 331 ~~R~~~y~~l~~e~~~ 346 (358)
T 2rcn_A 331 ETRFENYHRILESMAQ 346 (358)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4555556666676654
No 121
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.50 E-value=5.2e-18 Score=176.95 Aligned_cols=165 Identities=15% Similarity=0.115 Sum_probs=106.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCC---CCccccEEEECCEeCCh-------------------hccccEEEE---e
Q 046786 63 ELLAILGPSGCGKTTLLTALGGRLSNGK---DTVTQGHITYNGKQFSA-------------------EVKRRTGFV---A 117 (604)
Q Consensus 63 e~~aIlGpsGaGKSTLL~~L~g~~~~~~---~~~~~G~I~~~G~~~~~-------------------~~~~~i~yv---~ 117 (604)
++++|.|+||||||||||.|.|..+..+ +.++.|+|.++|.++.. .+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 6899999999999999999999862110 13578999999988642 123456777 5
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCC---CCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhh
Q 046786 118 QNNVFYPHLTVAETLVFTALLRLPNS---LKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLI 194 (604)
Q Consensus 118 Q~~~l~~~lTv~e~l~f~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~ 194 (604)
|+..+++..++.|+..++.....-.. .+...+..+++.+++.+++.+..+.. .++|+||+||+..++.+++
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~------~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM------NQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH------HHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH------hhchHHHHHHHhCCEEEEE
Confidence 77666666777777653210000000 00000011122233344444443322 2689999999998889999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcC
Q 046786 195 NPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFN 246 (604)
Q Consensus 195 ~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d 246 (604)
+|+++ ||| ..+.+.|+++. .+.+|++++|++. +...++|
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~-~~~~l~~ 197 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI-DLGLLFN 197 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC-CGGGGSC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC-CHHHHhC
Confidence 99987 999 77888888875 5899999999865 2334443
No 122
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.49 E-value=1e-15 Score=164.36 Aligned_cols=171 Identities=17% Similarity=0.160 Sum_probs=112.9
Q ss_pred cccceeeceEEEEecCeE--EEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCC
Q 046786 47 EEKMILKGVSGAVSPGEL--LAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYP 124 (604)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~--~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~ 124 (604)
+..+ |+++|+++++|++ ++|+||||||||||+|+|+|..- .|.-.. ... ....++.++|++|++.+++
T Consensus 26 ~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-------~g~~~~-~~~-~~~~~~~i~~v~Q~~~l~~ 95 (427)
T 2qag_B 26 DSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-------EGEPAT-HTQ-PGVQLQSNTYDLQESNVRL 95 (427)
T ss_dssp C--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------------CC-SSCEEEEEEEEEEC--CEE
T ss_pred CCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-------cCCcCC-CCC-ccceEeeEEEEeecCcccc
Confidence 3455 9999999999999 99999999999999999999742 222110 000 1123457999999998888
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHH--------HHHHHHHHHHHHc-CCCc----ccccc----cc--CccCCCcCHHHHHH
Q 046786 125 HLTVAETLVFTALLRLPNSLKRE--------EKVLHAEAVINQL-GLAR----CRNSI----IG--GRLVRGLSGGERKR 185 (604)
Q Consensus 125 ~lTv~e~l~f~~~~~~~~~~~~~--------~~~~~v~~~l~~l-gL~~----~~~~~----vg--~~~~~~LSgGerqR 185 (604)
.+||.||+.|+.. .... ...+..++.++.. ++.. ..|+. +. .....+++-.+
T Consensus 96 ~ltv~D~~~~g~~------~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D--- 166 (427)
T 2qag_B 96 KLTIVSTVGFGDQ------INKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD--- 166 (427)
T ss_dssp EEEEEEEECCCC-------CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---
T ss_pred ccchhhhhhhhhc------cccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---
Confidence 8999999876432 1111 1123455556654 5432 12222 11 01123677666
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCEEEEEecC
Q 046786 186 ISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSK-LAEGGRTILMTIHQ 236 (604)
Q Consensus 186 vsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~-la~~g~tvi~~~Hq 236 (604)
+.|+++|..+++++++|||+..|.+.....+.+.+++ +...|..|+.++.+
T Consensus 167 ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 167 LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 7899999999999999999999999999999999987 77789998887754
No 123
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.46 E-value=4.1e-15 Score=161.79 Aligned_cols=152 Identities=12% Similarity=0.123 Sum_probs=106.3
Q ss_pred eeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--------h--ccccEEEEecCCC
Q 046786 52 LKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--------E--VKRRTGFVAQNNV 121 (604)
Q Consensus 52 L~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--------~--~~~~i~yv~Q~~~ 121 (604)
-+++|+++++|++++|+||||||||||+++|+|+++ +++|+|.++|.+... . .++.++|++|+..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~-----~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~ 357 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE-----QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTG 357 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTT
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh-----hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccC
Confidence 468999999999999999999999999999999875 458999998776532 1 2567999999988
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHh-hCCC-eE
Q 046786 122 FYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELL-INPS-LL 199 (604)
Q Consensus 122 l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~-~~p~-il 199 (604)
+++.+||++++.++..-.. . . -+++..|+.+... .+-...+|++.+++++. ..|. ++
T Consensus 358 ~~p~~tV~e~l~~a~~~~~--D--------v--VLIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evL 416 (503)
T 2yhs_A 358 ADSASVIFDAIQAAKARNI--D--------V--LIADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVM 416 (503)
T ss_dssp CCHHHHHHHHHHHHHHTTC--S--------E--EEECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEE
T ss_pred cCHHHHHHHHHHHHHhcCC--C--------E--EEEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeE
Confidence 8888999999998753110 0 0 0223333322111 12223357888888664 4574 56
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEec
Q 046786 200 FLDEPTSGLDSTMAKKILVSLSKLAE-GGRTILMTIH 235 (604)
Q Consensus 200 lLDEPtsgLD~~~~~~i~~~l~~la~-~g~tvi~~~H 235 (604)
|..+||+|.|.. +.++.+.+ -|.|.++.||
T Consensus 417 LvLDattGq~al------~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 417 LTIDASTGQNAV------SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp EEEEGGGTHHHH------HHHHHHHHHTCCSEEEEEC
T ss_pred EEecCcccHHHH------HHHHHHHhhcCCCEEEEEc
Confidence 555588886543 34555554 4889999999
No 124
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.45 E-value=6.8e-15 Score=155.96 Aligned_cols=135 Identities=17% Similarity=0.165 Sum_probs=99.9
Q ss_pred eeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeC-Ch-hccccEEEEe-cCCCCCCCCCH
Q 046786 52 LKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQF-SA-EVKRRTGFVA-QNNVFYPHLTV 128 (604)
Q Consensus 52 L~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~-~~-~~~~~i~yv~-Q~~~l~~~lTv 128 (604)
++++|+.+++|++++|+||||||||||+|+|+|.++ |++|.|.++|..- .. ..++.++|++ |++.+
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~-----~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~------ 233 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP-----FDQRLITIEDVPELFLPDHPNHVHLFYPSEAKE------ 233 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC-----TTSCEEEEESSSCCCCTTCSSEEEEECC-----------
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC-----CCceEEEECCccccCccccCCEEEEeecCcccc------
Confidence 499999999999999999999999999999999986 4689999998532 11 2566789998 55431
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 046786 129 AETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGL 208 (604)
Q Consensus 129 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgL 208 (604)
+++++...|..|+.++..+|+.+++|||+.
T Consensus 234 ------------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-- 263 (361)
T 2gza_A 234 ------------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG-- 263 (361)
T ss_dssp -----------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS--
T ss_pred ------------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH--
Confidence 012223456677777888899999999985
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCC
Q 046786 209 DSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDG 255 (604)
Q Consensus 209 D~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G 255 (604)
.++.+.|+.+.....|++.++|..+ ....+||+..+ ..|
T Consensus 264 -----~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l-~~~ 302 (361)
T 2gza_A 264 -----GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALM-VLQ 302 (361)
T ss_dssp -----THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHH-HTT
T ss_pred -----HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHH-Hhc
Confidence 3456677777654568899999965 56778998888 554
No 125
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.44 E-value=3.4e-13 Score=143.37 Aligned_cols=81 Identities=27% Similarity=0.380 Sum_probs=70.2
Q ss_pred ccCCCcCHHHHHHH------HHHHHHhhC-CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhc
Q 046786 173 RLVRGLSGGERKRI------SIGQELLIN-PSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMF 245 (604)
Q Consensus 173 ~~~~~LSgGerqRv------sia~~L~~~-p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~ 245 (604)
..++.+||||+||+ ++|++|+.+ |++++|||||+|||+..+..+.+.|+++.+ +.+||++||+|. +...+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~vi~~th~~~--~~~~~ 352 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS-IPQMIIITHHRE--LEDVA 352 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS-CSEEEEEESCGG--GGGGC
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc-CCeEEEEEChHH--HHhhC
Confidence 45678999999988 557888999 999999999999999999999999999754 568999999974 57889
Q ss_pred CeEEEEecCCe
Q 046786 246 NKILLLSSDGS 256 (604)
Q Consensus 246 d~v~ll~~~G~ 256 (604)
|+++++.++|.
T Consensus 353 d~~~~l~k~~~ 363 (371)
T 3auy_A 353 DVIINVKKDGN 363 (371)
T ss_dssp SEEEEEEESSS
T ss_pred CEEEEEEecCC
Confidence 99999955554
No 126
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.44 E-value=6.3e-17 Score=171.81 Aligned_cols=161 Identities=14% Similarity=0.095 Sum_probs=101.2
Q ss_pred eeeceEEEEec--CeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccc----cEEEEC----CEeCC---hhccccEEEEe
Q 046786 51 ILKGVSGAVSP--GELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQ----GHITYN----GKQFS---AEVKRRTGFVA 117 (604)
Q Consensus 51 iL~~vs~~i~~--Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~----G~I~~~----G~~~~---~~~~~~i~yv~ 117 (604)
+.+.|++.+++ |+.++|+||||||||||+|+|+|+++ |++ |+|.++ |.+.. ..+ +.|+|++
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~-----~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~ 230 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN-----TTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGH 230 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT-----CEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC-----CCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHH
Confidence 46789999999 99999999999999999999999985 456 777653 22210 011 2233333
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHh-hCC
Q 046786 118 QNNVFYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELL-INP 196 (604)
Q Consensus 118 Q~~~l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~-~~p 196 (604)
|+..++. .|+.||+.+. + .+..+ .....+|+|++||..+++++. .+|
T Consensus 231 q~~~~~~-~t~~~nl~~~-------------------------~-~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~ 278 (365)
T 1lw7_A 231 QRYIDYA-VRHSHKIAFI-------------------------D-TDFIT-----TQAFCIQYEGKAHPFLDSMIKEYPF 278 (365)
T ss_dssp HHHHHHH-HHHCSSEEEE-------------------------S-SCHHH-----HHHHHHHHHSCCCHHHHHHHHHSCC
T ss_pred HHHHHHH-HhccCCEEEE-------------------------e-CCchH-----HHHHHHHHcCCCCHHHHHHHhhcCC
Confidence 3221110 1122221110 0 01111 112245677788888887775 699
Q ss_pred CeEEEeC---CC------CCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEE
Q 046786 197 SLLFLDE---PT------SGLDSTMAKKILVSLSKLAE-GGRTILMTIHQPASSLFYMFNKILLL 251 (604)
Q Consensus 197 ~illLDE---Pt------sgLD~~~~~~i~~~l~~la~-~g~tvi~~~Hq~~~~i~~~~d~v~ll 251 (604)
++++||| |+ .++|+..+..+.+.|+++.+ .|.+|++++|. + ....++|.+.++
T Consensus 279 ~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i 341 (365)
T 1lw7_A 279 DVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVI 341 (365)
T ss_dssp SEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHH
T ss_pred CEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHH
Confidence 9999999 65 58999999999999999865 48899999875 3 345566655555
No 127
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.43 E-value=1.6e-14 Score=150.91 Aligned_cols=142 Identities=13% Similarity=0.136 Sum_probs=100.0
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--------hccc--cEEEEecCCCCCCCCCHH
Q 046786 60 SPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--------EVKR--RTGFVAQNNVFYPHLTVA 129 (604)
Q Consensus 60 ~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--------~~~~--~i~yv~Q~~~l~~~lTv~ 129 (604)
++|++++|+||||||||||++.|+|.++ +++|+|.++|.+... .+++ .+.+++|...+.|.+||+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~-----~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~ 201 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLK-----NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAY 201 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH-----hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHH
Confidence 6899999999999999999999999875 568999999998742 1122 466999999999999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q 046786 130 ETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLD 209 (604)
Q Consensus 130 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD 209 (604)
|++.++..... . . .+++..|+.+..+ ....+|| .+++++..++.+++||.+| |
T Consensus 202 e~l~~~~~~~~--d--------~--vliDtaG~~~~~~-----~l~~eL~-------~i~ral~~de~llvLDa~t-~-- 254 (328)
T 3e70_C 202 DAIQHAKARGI--D--------V--VLIDTAGRSETNR-----NLMDEMK-------KIARVTKPNLVIFVGDALA-G-- 254 (328)
T ss_dssp HHHHHHHHHTC--S--------E--EEEEECCSCCTTT-----CHHHHHH-------HHHHHHCCSEEEEEEEGGG-T--
T ss_pred HHHHHHHhccc--h--------h--hHHhhccchhHHH-----HHHHHHH-------HHHHHhcCCCCEEEEecHH-H--
Confidence 99987642110 0 0 0122233332221 1122333 3888888888888888554 3
Q ss_pred HHHHHHHHHHHHHHHh-CCCEEEEEecCC
Q 046786 210 STMAKKILVSLSKLAE-GGRTILMTIHQP 237 (604)
Q Consensus 210 ~~~~~~i~~~l~~la~-~g~tvi~~~Hq~ 237 (604)
.++++.++.+.+ .|.|+|++||..
T Consensus 255 ----~~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 255 ----NAIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp ----THHHHHHHHHHHHSCCCEEEEECGG
T ss_pred ----HHHHHHHHHHHHhcCCCEEEEeCcC
Confidence 466667777764 589999999953
No 128
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.41 E-value=2.3e-13 Score=134.73 Aligned_cols=155 Identities=17% Similarity=0.240 Sum_probs=86.3
Q ss_pred EEEecCeEEEEECCCCCcHHHHHHHHHc--CCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHH
Q 046786 57 GAVSPGELLAILGPSGCGKTTLLTALGG--RLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTVAETLVF 134 (604)
Q Consensus 57 ~~i~~Ge~~aIlGpsGaGKSTLL~~L~g--~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~f 134 (604)
+-+++|++++|+||||||||||++.|++ ..++.......|.+++++.+.. ...+....
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~--------------------~~~~~~~~ 78 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTF--------------------RPERLLAV 78 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC--------------------CHHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCc--------------------CHHHHHHH
Confidence 5689999999999999999999999999 3321000012566666665420 01110000
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHH-HHHHHHHh--hCCCeEEEeCCCCCCCHH
Q 046786 135 TALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKR-ISIGQELL--INPSLLFLDEPTSGLDST 211 (604)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR-vsia~~L~--~~p~illLDEPtsgLD~~ 211 (604)
...+. ...+ ++++.+.+ ....+..+..+ +.-+.+++ .+|+++++|||++.+|+.
T Consensus 79 ~~~~g----~~~~-------~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~ 135 (243)
T 1n0w_A 79 AERYG----LSGS-------DVLDNVAY------------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTD 135 (243)
T ss_dssp HHHTT----CCHH-------HHHHTEEE------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC--
T ss_pred HHHcC----CCHH-------HHhhCeEE------------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHH
Confidence 01110 1110 11221111 11344444332 23333444 589999999999999985
Q ss_pred -------H-----HHHHHHHHHHHHhC-CCEEEEEecCCchH------------------HHhhcCeEEEEecCC
Q 046786 212 -------M-----AKKILVSLSKLAEG-GRTILMTIHQPASS------------------LFYMFNKILLLSSDG 255 (604)
Q Consensus 212 -------~-----~~~i~~~l~~la~~-g~tvi~~~Hq~~~~------------------i~~~~d~v~ll~~~G 255 (604)
. ...+++.|++++++ |.|||+++|..... +...+|.+++| +.|
T Consensus 136 ~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l-~~~ 209 (243)
T 1n0w_A 136 YSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYL-RKG 209 (243)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEE-EEC
T ss_pred hcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEE-EEc
Confidence 3 34567777777754 99999999964321 22378999999 544
No 129
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.41 E-value=6.3e-15 Score=138.04 Aligned_cols=80 Identities=21% Similarity=0.214 Sum_probs=66.7
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCC
Q 046786 47 EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHL 126 (604)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~l 126 (604)
+++.+++++|+++++|++++|+||||||||||+|+|+|.+ + ++|+|.++|.++....... .|++|+..++ .+
T Consensus 18 g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~-----~~G~V~~~g~~i~~~~~~~-~~~~q~~~l~-~l 89 (158)
T 1htw_A 18 GKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G-----HQGNVKSPTYTLVEEYNIA-GKMIYHFDLY-RL 89 (158)
T ss_dssp HHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T-----CCSCCCCCTTTCEEEEEET-TEEEEEEECT-TC
T ss_pred HHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C-----CCCeEEECCEeeeeeccCC-Ccceeccccc-cC
Confidence 3467899999999999999999999999999999999987 3 4899999998874322111 2899998888 89
Q ss_pred CHHHHHHH
Q 046786 127 TVAETLVF 134 (604)
Q Consensus 127 Tv~e~l~f 134 (604)
||.|++.+
T Consensus 90 tv~e~l~~ 97 (158)
T 1htw_A 90 ADPEELEF 97 (158)
T ss_dssp SCTTHHHH
T ss_pred CcHHHHHH
Confidence 99999965
No 130
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.40 E-value=1.5e-15 Score=144.12 Aligned_cols=138 Identities=19% Similarity=0.210 Sum_probs=89.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCC-------hhcc-ccEE----EEecCCCCCCCCCHHH
Q 046786 63 ELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS-------AEVK-RRTG----FVAQNNVFYPHLTVAE 130 (604)
Q Consensus 63 e~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~-------~~~~-~~i~----yv~Q~~~l~~~lTv~e 130 (604)
++++|+|+||||||||++.|+|.+++... ..|.|.++|.++. +.++ +.+| +++|+..++ +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~--~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~ 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGL--RVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTC--CEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCC--ceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec
Confidence 57999999999999999999998753111 1799999998742 2344 3566 888877654 110
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHH-cCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeE-------EEe
Q 046786 131 TLVFTALLRLPNSLKREEKVLHAEAVINQ-LGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLL-------FLD 202 (604)
Q Consensus 131 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~-lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~il-------lLD 202 (604)
+ .. +....++++++. +. -.|+.++. +||||||||++|||+++.+|++. .-|
T Consensus 77 ----------~---~~-~~~a~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~ 135 (171)
T 2f1r_A 77 ----------V---SE-EEGNDLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCD 135 (171)
T ss_dssp ----------C---CH-HHHTCHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECS
T ss_pred ----------C---Ch-hhhhCHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEec
Confidence 0 11 111235566665 53 36888874 59999999999999999999873 235
Q ss_pred CCCCC---CCHHHHHHHHHHHHHHHhCC
Q 046786 203 EPTSG---LDSTMAKKILVSLSKLAEGG 227 (604)
Q Consensus 203 EPtsg---LD~~~~~~i~~~l~~la~~g 227 (604)
.|..+ +|......+.+.+.+...+|
T Consensus 136 ~~~~~~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 136 ERVDGHKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp SCCSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred CCcccCcccCcccHHHHHHHHHHHHhcc
Confidence 55322 34455677777776666554
No 131
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.39 E-value=1e-15 Score=160.84 Aligned_cols=162 Identities=16% Similarity=0.181 Sum_probs=109.8
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--------hccccEEEEecC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--------EVKRRTGFVAQN 119 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--------~~~~~i~yv~Q~ 119 (604)
.+.+|+++|+++++|++++|+||||||||||+|+|+|.+. |++|+|.+.|.++.. ..++.++|++|+
T Consensus 41 ~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~-----~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~ 115 (337)
T 2qm8_A 41 VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT-----AAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAID 115 (337)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGC
T ss_pred hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh-----hCCCEEEEEEEcCcccccccchHHHhhhheeeccC
Confidence 4579999999999999999999999999999999999874 568999999988742 235678999999
Q ss_pred CCCCCCC------------CHHHHHHHHH---------------------H--------hcCCCCCCHHHHH---HHHHH
Q 046786 120 NVFYPHL------------TVAETLVFTA---------------------L--------LRLPNSLKREEKV---LHAEA 155 (604)
Q Consensus 120 ~~l~~~l------------Tv~e~l~f~~---------------------~--------~~~~~~~~~~~~~---~~v~~ 155 (604)
+.+++.. +++|.+.... . +..+ .. .++.+ +.+.+
T Consensus 116 ~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~-~~-~~~~~~i~~~i~~ 193 (337)
T 2qm8_A 116 RNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLP-GA-GDELQGIKKGIFE 193 (337)
T ss_dssp TTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECS-CC-------CCTTHHH
T ss_pred cccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcC-CC-cccHHHHHHHHhc
Confidence 8776532 1233321100 0 0000 00 00000 01111
Q ss_pred HHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhh------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 046786 156 VINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLI------NPSLLFLDEPTSGLDSTMAKKILVSLSKLAE 225 (604)
Q Consensus 156 ~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~------~p~illLDEPtsgLD~~~~~~i~~~l~~la~ 225 (604)
..+.+.+ +..|. ...+.+|+|++|++..+++++. +|++++ ||++|.....++.+.|.++.+
T Consensus 194 ~~~ivvl-NK~Dl----~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 194 LADMIAV-NKADD----GDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HCSEEEE-ECCST----TCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred cccEEEE-Echhc----cCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 1111222 12221 1124689999999999999987 688876 999999999999999988754
No 132
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.36 E-value=3.5e-13 Score=124.83 Aligned_cols=45 Identities=11% Similarity=0.252 Sum_probs=37.8
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE-EEEEecCCc
Q 046786 193 LINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRT-ILMTIHQPA 238 (604)
Q Consensus 193 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~t-vi~~~Hq~~ 238 (604)
+.+|++|++|||++ +|...+..+.+.+.++.++|++ +|+++|.+.
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~p 126 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTP 126 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSCT
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCCH
Confidence 56799999999998 6655588899999999888888 899999654
No 133
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.36 E-value=2.4e-14 Score=148.13 Aligned_cols=121 Identities=14% Similarity=0.213 Sum_probs=82.8
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEE---CCEeCCh---hcc-ccEEEEecCCCCC-----CCC
Q 046786 59 VSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITY---NGKQFSA---EVK-RRTGFVAQNNVFY-----PHL 126 (604)
Q Consensus 59 i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~---~G~~~~~---~~~-~~i~yv~Q~~~l~-----~~l 126 (604)
+.+|++++|+||||||||||+|+|+ ..+ +++|+|.+ +|++.+. ..+ +.+|||+|++.+. +.+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~-----~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~l 235 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEE-----LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFV 235 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCC-----CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTS
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-Hhh-----CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccC
Confidence 3569999999999999999999999 764 56899999 9988753 122 3689999998653 788
Q ss_pred CHHHHH--HHH----HHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCcCHHHHHHHHHHHH
Q 046786 127 TVAETL--VFT----ALLRLPNSLKREEKVLHAEAVINQLGLAR-CRNSIIGGRLVRGLSGGERKRISIGQE 191 (604)
Q Consensus 127 Tv~e~l--~f~----~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRvsia~~ 191 (604)
|+ |++ .|. ..++........+...+++++++.++|.+ ..+ .+++.|||.++|++.|||+
T Consensus 236 t~-e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~-----~~~~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 236 KP-REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYK-----SYLKIIKVYLEEIKELCRE 301 (302)
T ss_dssp CG-GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHH-----HHHHHTTCCCTTHHHHSSC
T ss_pred CH-HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHH-----HHHHHHHHHHHHHHHHhcc
Confidence 99 887 453 10111111122233457889999999986 555 3456899999999999874
No 134
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.35 E-value=3.5e-14 Score=145.93 Aligned_cols=128 Identities=16% Similarity=0.233 Sum_probs=88.8
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHH--
Q 046786 60 SPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTVAETLVFTAL-- 137 (604)
Q Consensus 60 ~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~-- 137 (604)
+++.+++|.||||||||||.+.|++.+.+ .|. -++.+.+|+||+.+++. ++++++.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~------~g~-----------~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~ 90 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME------KYG-----------GEKSIGYASIDDFYLTH-EDQLKLNEQFKNN 90 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH------HHG-----------GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh------cCC-----------CCceEEEeccccccCCh-HHHHHHhcccccc
Confidence 46789999999999999999999998741 220 13456677999998875 88999887531
Q ss_pred --hc---CCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccCCCcCHHHHHHHHHH--HHHhhCCCeEEEeCCCC
Q 046786 138 --LR---LPNSLKREEKVLHAEAVINQLGLAR----CRNSIIGGRLVRGLSGGERKRISIG--QELLINPSLLFLDEPTS 206 (604)
Q Consensus 138 --~~---~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~~~~~LSgGerqRvsia--~~L~~~p~illLDEPts 206 (604)
+. .|.... .+...+.++.+.-.- .....+. .+...+||||+||+.+| +++ +|+|+|+|||++
T Consensus 91 ~l~~~~g~p~a~d----~~~l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~ 163 (290)
T 1odf_A 91 KLLQGRGLPGTHD----MKLLQEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFL 163 (290)
T ss_dssp GGGSSSCSTTSBC----HHHHHHHHHHHTC------CCEEEEC-CEETTHHHHTCEECSSCEEEES--SCSEEEEEESST
T ss_pred chhhhccCcchhH----HHHHHHHHHHhhccCccccCcceeec-cCccccCCccccccccccceEc--CCCEEEEeCccc
Confidence 11 122222 234566677664320 0111122 34568999999999987 555 999999999999
Q ss_pred CCCHHH
Q 046786 207 GLDSTM 212 (604)
Q Consensus 207 gLD~~~ 212 (604)
++|+..
T Consensus 164 ~ld~~~ 169 (290)
T 1odf_A 164 GFNPIL 169 (290)
T ss_dssp TCCCCC
T ss_pred cCCccc
Confidence 999853
No 135
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.35 E-value=7.2e-13 Score=125.79 Aligned_cols=49 Identities=16% Similarity=0.173 Sum_probs=43.4
Q ss_pred HhhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH
Q 046786 192 LLINPSLLFLDEPTS-GLDSTMAKKILVSLSKLAEGGRTILMTIHQPASS 240 (604)
Q Consensus 192 L~~~p~illLDEPts-gLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~ 240 (604)
.+.+|++|+||||++ ++|+.....+.+++.+..++|+++|++||.+..+
T Consensus 97 ~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 97 TVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred HhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 345999999999985 9999999999999999888899999999987643
No 136
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.31 E-value=3.9e-12 Score=137.78 Aligned_cols=76 Identities=17% Similarity=0.249 Sum_probs=69.1
Q ss_pred CCCcCHHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEE
Q 046786 175 VRGLSGGERKRISIGQELL----INPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILL 250 (604)
Q Consensus 175 ~~~LSgGerqRvsia~~L~----~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~l 250 (604)
+..||||||||++||++|+ .+|++++|||||++||+.....+.+.|+++.++|.++|+++|++ .....+|+++.
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~ 408 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVG 408 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEE
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEE
Confidence 3469999999999999999 57999999999999999999999999999876689999999995 46778999999
Q ss_pred Ee
Q 046786 251 LS 252 (604)
Q Consensus 251 l~ 252 (604)
+.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 84
No 137
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.30 E-value=3.3e-13 Score=145.20 Aligned_cols=171 Identities=16% Similarity=0.148 Sum_probs=100.2
Q ss_pred eeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHH
Q 046786 52 LKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTVAET 131 (604)
Q Consensus 52 L~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~ 131 (604)
-++++++++.|+.++|+|+|||||||||++|+|..+ .+.+.+.+. ....+|+|.+++. ..+++.|+
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~-----------~i~~~~ftT-l~p~~G~V~~~~~--~~~~l~Dt 212 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP-----------KIAPYPFTT-LSPNLGVVEVSEE--ERFTLADI 212 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC-----------EECCCTTCS-SCCEEEEEECSSS--CEEEEEEC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc-----------cccCcccce-ecceeeEEEecCc--ceEEEEec
Confidence 479999999999999999999999999999999742 122222111 1223444444320 00111111
Q ss_pred HHHHHHhcCCCCCCHHH--HHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q 046786 132 LVFTALLRLPNSLKREE--KVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLD 209 (604)
Q Consensus 132 l~f~~~~~~~~~~~~~~--~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD 209 (604)
.-+.........+.... ..++++.++..+++. +.....+|+|++||+.+|++|+.+|.++++ +++|
T Consensus 213 pGli~~a~~~~~L~~~fl~~~era~~lL~vvDls--------~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlD 280 (416)
T 1udx_A 213 PGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA--------DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVD 280 (416)
T ss_dssp CCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT--------SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCT
T ss_pred cccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc--------cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCC
Confidence 00000000000111111 011122333334443 234568999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHH-hCCCEEEEEecCCchHHHhhcCeEE
Q 046786 210 STMAKKILVSLSKLA-EGGRTILMTIHQPASSLFYMFNKIL 249 (604)
Q Consensus 210 ~~~~~~i~~~l~~la-~~g~tvi~~~Hq~~~~i~~~~d~v~ 249 (604)
...+ ..++.+++.. +.|.+++.++..-...+.++++.+.
T Consensus 281 l~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~ 320 (416)
T 1udx_A 281 LLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEALH 320 (416)
T ss_dssp TSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHH
T ss_pred hhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHH
Confidence 9877 5555555544 4577777666443445666665543
No 138
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.29 E-value=2.2e-12 Score=135.31 Aligned_cols=135 Identities=16% Similarity=0.179 Sum_probs=75.9
Q ss_pred EEEECCCCCcHHHHHHHHHc-CCCCCCCCccccEEEECCEeCCh--hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCC
Q 046786 65 LAILGPSGCGKTTLLTALGG-RLSNGKDTVTQGHITYNGKQFSA--EVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLP 141 (604)
Q Consensus 65 ~aIlGpsGaGKSTLL~~L~g-~~~~~~~~~~~G~I~~~G~~~~~--~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~ 141 (604)
+.|.||||+|||||+++|++ +.. ++.|++.++|.+... ..+..+++++|.+.+.-..+ + ..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~-----~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~-- 102 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFG-----PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D-------MG-- 102 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSC-----TTCCC------------------CCEECSSEEEECCC--------------
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC-----CCCCeEEecceeecccccccceeeeecccceEEecHh--h-------cC--
Confidence 89999999999999999999 543 457999999977642 23456889998765321111 0 00
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 046786 142 NSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLS 221 (604)
Q Consensus 142 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~ 221 (604)
..... .+.+.++.+.-....+.. . .+|| +..+|+++++|||++ ||+.++..+.+.++
T Consensus 103 -~~~~~----~~~~~i~~~~~~~~~~~~-----~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le 159 (354)
T 1sxj_E 103 -NNDRI----VIQELLKEVAQMEQVDFQ-----D-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTME 159 (354)
T ss_dssp --CCHH----HHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHH
T ss_pred -CcchH----HHHHHHHHHHHhcccccc-----c-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHH
Confidence 00111 233344433221111111 1 4566 788999999999999 99999999999998
Q ss_pred HHHhCCCEEEEEecCCch
Q 046786 222 KLAEGGRTILMTIHQPAS 239 (604)
Q Consensus 222 ~la~~g~tvi~~~Hq~~~ 239 (604)
+..+ +.++|+++|+|..
T Consensus 160 ~~~~-~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 160 KYSK-NIRLIMVCDSMSP 176 (354)
T ss_dssp HSTT-TEEEEEEESCSCS
T ss_pred hhcC-CCEEEEEeCCHHH
Confidence 8753 6899999999864
No 139
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.26 E-value=6.2e-15 Score=158.84 Aligned_cols=133 Identities=18% Similarity=0.179 Sum_probs=91.9
Q ss_pred eeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--------hccccEEEEe-----
Q 046786 51 ILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--------EVKRRTGFVA----- 117 (604)
Q Consensus 51 iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--------~~~~~i~yv~----- 117 (604)
+|+++ + .++|++++|+|||||||||||++|+|.++ +++|+|.+.|.++.. ..++.+++.+
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~-----~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr 230 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELN-----SSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLR 230 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHC-----CTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHH
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcC-----CCCCEEEEecccchhccCCcceEEEccccCcCHHHHHH
Confidence 56666 4 37999999999999999999999999875 458999999987632 1234556655
Q ss_pred ----cCCCC--CCC----CCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHH
Q 046786 118 ----QNNVF--YPH----LTVAETLVFTALLRLP-NSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRI 186 (604)
Q Consensus 118 ----Q~~~l--~~~----lTv~e~l~f~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 186 (604)
|++.. ++. .|+.+++.++....+. .........+ +.+.|..+|+.+.. .+..|||||+||
T Consensus 231 ~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~~-------~~~~LSgg~~QR- 301 (418)
T 1p9r_A 231 AILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPFL-------ISSSLLGVLAQR- 301 (418)
T ss_dssp HHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHH-HHHHHHHHTCCHHH-------HHHHEEEEEEEE-
T ss_pred HHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHH-HHHHHHHcCCcHHH-------HHHHHHHHHHHH-
Confidence 88754 344 6889998876421100 0000001112 22356778887542 245899999999
Q ss_pred HHHHHHhhCCCeEE
Q 046786 187 SIGQELLINPSLLF 200 (604)
Q Consensus 187 sia~~L~~~p~ill 200 (604)
||++|+.+|++..
T Consensus 302 -LaraL~~~p~~~~ 314 (418)
T 1p9r_A 302 -LVRTLCPDCKEPY 314 (418)
T ss_dssp -EEEEECTTTCEEE
T ss_pred -hhhhhcCCCCccC
Confidence 9999999999865
No 140
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.23 E-value=3e-11 Score=129.39 Aligned_cols=150 Identities=17% Similarity=0.273 Sum_probs=87.3
Q ss_pred EEEecCeEEEEECCCCCcHHHHHHHH--HcCCCCCCCCccccEEEECCEeC-Ch-h---ccccEEEEecCCCCCCCCCHH
Q 046786 57 GAVSPGELLAILGPSGCGKTTLLTAL--GGRLSNGKDTVTQGHITYNGKQF-SA-E---VKRRTGFVAQNNVFYPHLTVA 129 (604)
Q Consensus 57 ~~i~~Ge~~aIlGpsGaGKSTLL~~L--~g~~~~~~~~~~~G~I~~~G~~~-~~-~---~~~~i~yv~Q~~~l~~~lTv~ 129 (604)
+-+++|++++|+||||||||||++.| .+..++.......+.++++++.. .. . ..+.+|+.+|
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~----------- 241 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD----------- 241 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-----------
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-----------
Confidence 67999999999999999999999954 45553100000133666666532 10 0 0111111111
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCH-HHHHHHHHHHHHh--hCCCeEEEeCCCC
Q 046786 130 ETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSG-GERKRISIGQELL--INPSLLFLDEPTS 206 (604)
Q Consensus 130 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg-GerqRvsia~~L~--~~p~illLDEPts 206 (604)
.+++.+-+ .+..++ .+.+.+.-+.+++ .+|+++++||||+
T Consensus 242 -------------------------~vleni~~------------~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 242 -------------------------DALNNVAY------------ARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp -------------------------HHHHTEEE------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred -------------------------hHhhcEEE------------eccCChHHHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 11111111 011222 2233333333433 4699999999999
Q ss_pred CCCHHHH------------HHHHHHHHHHHhC-CCEEEEEecCCc------------------hHHHhhcCeEEEEecCC
Q 046786 207 GLDSTMA------------KKILVSLSKLAEG-GRTILMTIHQPA------------------SSLFYMFNKILLLSSDG 255 (604)
Q Consensus 207 gLD~~~~------------~~i~~~l~~la~~-g~tvi~~~Hq~~------------------~~i~~~~d~v~ll~~~G 255 (604)
.+|+... ..+++.|++++++ |.|||+++|... ..+.+.+|.++.| +.+
T Consensus 285 ~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L-~~~ 363 (400)
T 3lda_A 285 LYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGF-KKG 363 (400)
T ss_dssp GCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEE-EEC
T ss_pred hCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEE-Eec
Confidence 9997543 6788899999865 999999999821 2346678988888 544
No 141
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.23 E-value=1.1e-14 Score=160.70 Aligned_cols=176 Identities=11% Similarity=0.045 Sum_probs=107.5
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEe-CChhccccEEEEecCCCCC----
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQ-FSAEVKRRTGFVAQNNVFY---- 123 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~-~~~~~~~~i~yv~Q~~~l~---- 123 (604)
..+++++++.+++|+.++|+|||||||||||++|+|.++ |++|.|.++|.+ +.....+.++++.|.....
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~-----~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~ 321 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP-----PDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEID 321 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC-----TTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBC
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC-----CCCCEEEEcCcccccCCCCCeEEEEeecccccCCcC
Confidence 346889999999999999999999999999999999985 468999999865 2211233456666543322
Q ss_pred ------------------CCCCHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHHHcCCC-----c----cccccccCccC
Q 046786 124 ------------------PHLTVAETLVFTALLRLPNS-LKREEKVLHAEAVINQLGLA-----R----CRNSIIGGRLV 175 (604)
Q Consensus 124 ------------------~~lTv~e~l~f~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~-----~----~~~~~vg~~~~ 175 (604)
+.++..|++.+......+.. ++.. ....+.++++.+... . ..+..+ ...
T Consensus 322 ~~~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~-Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi--~~~ 398 (511)
T 2oap_1 322 MYDLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTL-HAGDINQMVYRLESEPLKVPRSMLQFLDIAL--VQT 398 (511)
T ss_dssp HHHHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEE-ECSSHHHHHHHHHSTTTCCCGGGGGGCCEEE--EEE
T ss_pred HHHHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCccccc-ccCCHHHHHHHHHhcccccHHHHHhhccEEE--EEE
Confidence 23444444433222221100 0000 000122333333221 1 111111 123
Q ss_pred CCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE--EecCCchHHHhhc
Q 046786 176 RGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILM--TIHQPASSLFYMF 245 (604)
Q Consensus 176 ~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~--~~Hq~~~~i~~~~ 245 (604)
..+||||+||..++. + | |+|||+.....+.+.|.++.+.|+|+++ ++|+.. ++...+
T Consensus 399 ~~~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~ 457 (511)
T 2oap_1 399 MWVRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFL 457 (511)
T ss_dssp EEESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHH
T ss_pred EEEeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHc
Confidence 467999999877641 2 7 9999998877777777777767888875 889864 454443
No 142
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.22 E-value=5.9e-14 Score=136.89 Aligned_cols=165 Identities=16% Similarity=0.151 Sum_probs=91.8
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHh
Q 046786 59 VSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTVAETLVFTALL 138 (604)
Q Consensus 59 i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~ 138 (604)
.++|++++|+||||||||||+++|+|++++ + | ..+|+|++++..++. +..+++......
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~-----~-g--------------~~~g~v~~d~~~~~~-~~~~~~~~~~~~ 77 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSA-----Q-G--------------LPAEVVPMDGFHLDN-RLLEPRGLLPRK 77 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHH-----T-T--------------CCEEEEESGGGBCCH-HHHGGGTCGGGT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh-----c-C--------------CceEEEecCCCcCCH-HHHHHhcccccC
Confidence 478999999999999999999999998752 1 2 135555555544321 112221100000
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHH-HHHhhCCCeEEEeCCCCCCCHHHHHHHH
Q 046786 139 RLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIG-QELLINPSLLFLDEPTSGLDSTMAKKIL 217 (604)
Q Consensus 139 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia-~~L~~~p~illLDEPtsgLD~~~~~~i~ 217 (604)
..+...... ...+.+..+...+..+..+.+. ...+|+||+||++++ +.++.++.++++|||..
T Consensus 78 ~~~~~~~~~----~~~~~l~~l~~~~~i~~p~~d~-~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~----------- 141 (208)
T 3c8u_A 78 GAPETFDFE----GFQRLCHALKHQERVIYPLFDR-ARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW----------- 141 (208)
T ss_dssp TSGGGBCHH----HHHHHHHHHHHCSCEEEEEEET-TTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------
T ss_pred CCCchhhHH----HHHHHHHHHhcCCceecccCCc-cccCCCCCceEEcCCCcEEEECCceeccCCchh-----------
Confidence 011111111 2223333332222223333322 346799999999998 78888888888888841
Q ss_pred HHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEecCCeEEEecChhhHHHHHH
Q 046786 218 VSLSKLAEGGRTILMTIHQPASSLFYMFNKILLLSSDGSSLYFGKGEDVINYFA 271 (604)
Q Consensus 218 ~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll~~~G~~v~~G~~~~~~~~f~ 271 (604)
+++.+.--.++.+.++....+.....+. + ..|+ +.+++.+.+.
T Consensus 142 ---~~l~~~~d~~i~vd~~~~~~~~R~~~R~--~-~~g~-----t~~~~~~~~~ 184 (208)
T 3c8u_A 142 ---RDLTAIWDVSIRLEVPMADLEARLVQRW--L-DHGL-----NHDAAVARAQ 184 (208)
T ss_dssp ---GGGGGTCSEEEEECCCHHHHHHHHHHHH--H-HTTC-----CHHHHHHHHH
T ss_pred ---HHHHHhcCEEEEEeCCHHHHHHHHHHHH--H-hcCC-----CHHHHHHHHH
Confidence 1122222366777777654455655552 2 3454 5566665544
No 143
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.20 E-value=7.6e-15 Score=156.57 Aligned_cols=173 Identities=16% Similarity=0.182 Sum_probs=122.3
Q ss_pred EEecCeEEEEECCCCCcHHHHHHHHHcCCC------C-CCCCccccEEEECCEeCCh-----hcccc---EEEEecCCCC
Q 046786 58 AVSPGELLAILGPSGCGKTTLLTALGGRLS------N-GKDTVTQGHITYNGKQFSA-----EVKRR---TGFVAQNNVF 122 (604)
Q Consensus 58 ~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~------~-~~~~~~~G~I~~~G~~~~~-----~~~~~---i~yv~Q~~~l 122 (604)
.+++|..++|+|+||||||||+|+|+|... + ....|+.|.+.++|..+.. .-++. ..++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 557899999999999999999999999321 0 1235789999999854421 11222 3477888888
Q ss_pred CCCCCHHHHH--HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCC--Ce
Q 046786 123 YPHLTVAETL--VFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINP--SL 198 (604)
Q Consensus 123 ~~~lTv~e~l--~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p--~i 198 (604)
.+..+..|.+ .|...++. ++.++..++..+ +..+..+||+. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~------------~d~il~Vvd~~~-------d~~i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA------------VDAIYQVVRAFD-------DAEIIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT------------CSEEEEEEECCC-------TTCSSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH------------HHHHHHHHhccc-------cceeeeecccc------------Ccchhh
Confidence 8877776655 44333321 111222222211 22334466653 89 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEecCCchHHHhhcCeEE-EEecCC-eEEEecChhh
Q 046786 199 LFLDEPTSGLDSTMAKKILVSLSKL-AEGGRTILMTIHQPASSLFYMFNKIL-LLSSDG-SSLYFGKGED 265 (604)
Q Consensus 199 llLDEPtsgLD~~~~~~i~~~l~~l-a~~g~tvi~~~Hq~~~~i~~~~d~v~-ll~~~G-~~v~~G~~~~ 265 (604)
+++|||+.++|+......++.++++ ++.|.||+ +|+.. ++..++|++. +| .+| ++++.|+.++
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L-~~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYL-TETKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHH-HTTCSCGGGSCCCH
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHh-ccCCceeecCCCCH
Confidence 9999999999999999999999998 77788864 99854 6889999999 88 899 9888887543
No 144
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.16 E-value=1.5e-13 Score=143.99 Aligned_cols=154 Identities=20% Similarity=0.186 Sum_probs=101.9
Q ss_pred cccceeeceEEEEecC-------eEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh---h-ccccEEE
Q 046786 47 EEKMILKGVSGAVSPG-------ELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---E-VKRRTGF 115 (604)
Q Consensus 47 ~~~~iL~~vs~~i~~G-------e~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---~-~~~~i~y 115 (604)
+.+.+++++++.+++| +.++|.||||+|||||+++|+|.+.. ...+++|.+..++.++.. . .++.+.|
T Consensus 29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~-~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~ 107 (334)
T 1in4_A 29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT-NIHVTSGPVLVKQGDMAAILTSLERGDVLF 107 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTC-CEEEEETTTCCSHHHHHHHHHHCCTTCEEE
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-CEEEEechHhcCHHHHHHHHHHccCCCEEE
Confidence 4456889999999877 89999999999999999999997631 122467777766655432 1 2457999
Q ss_pred EecCCCCCCCCCHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhh
Q 046786 116 VAQNNVFYPHLTVAETLVFTALLRLPNS-LKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLI 194 (604)
Q Consensus 116 v~Q~~~l~~~lTv~e~l~f~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~ 194 (604)
+.|.+.+.+ ++.|++..........- .......+.++..++.++|.. +++ .+..||+|+|||+.++
T Consensus 108 iDE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~-----~~~~Ls~~l~sR~~l~----- 174 (334)
T 1in4_A 108 IDEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATT-----RSGLLSSPLRSRFGII----- 174 (334)
T ss_dssp EETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EES-----CGGGSCHHHHTTCSEE-----
T ss_pred EcchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecC-----CcccCCHHHHHhcCce-----
Confidence 999888765 78888855433211000 011122234455555556543 443 3458999999998655
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 046786 195 NPSLLFLDEPTSGLDSTMAKKILVSLSKLAE 225 (604)
Q Consensus 195 ~p~illLDEPtsgLD~~~~~~i~~~l~~la~ 225 (604)
.+||+.+..++.++|++.++
T Consensus 175 -----------~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 175 -----------LELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp -----------EECCCCCHHHHHHHHHHHHH
T ss_pred -----------eeCCCCCHHHHHHHHHHHHH
Confidence 78888899999999999875
No 145
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.14 E-value=2.9e-12 Score=132.34 Aligned_cols=106 Identities=16% Similarity=0.276 Sum_probs=69.8
Q ss_pred EEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEE---CCEeCCh--h-c-cccEEEEecCCC---------
Q 046786 58 AVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITY---NGKQFSA--E-V-KRRTGFVAQNNV--------- 121 (604)
Q Consensus 58 ~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~---~G~~~~~--~-~-~~~i~yv~Q~~~--------- 121 (604)
.+.+|++++|+||||||||||||+|+|+.+ |++|+|.+ +|++++. . . .+.+|||+|++.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~-----~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~ 239 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLK-----LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDI 239 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCC-----CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSS
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccc-----ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcC
Confidence 345799999999999999999999999885 57999999 8988753 1 1 236899999974
Q ss_pred -------CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCcCH
Q 046786 122 -------FYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLA-RCRNSIIGGRLVRGLSG 180 (604)
Q Consensus 122 -------l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSg 180 (604)
++|.+|+ ||+.|.. +. . ..+...++.++|+.+||. +..+ ++++.||+
T Consensus 240 ~~~~~~~l~~~~~~-~n~~~~~-~~-~----~~e~~~~v~~~l~~~~L~~~~~~-----~~~~~lse 294 (301)
T 1u0l_A 240 EPEELKHYFKEFGD-KQCFFSD-CN-H----VDEPECGVKEAVENGEIAESRYE-----NYVKMFYE 294 (301)
T ss_dssp CHHHHGGGSTTSSS-CCCSSTT-CC-S----SSCSSCHHHHHHHHTSSCHHHHH-----HHHHHHHH
T ss_pred CHHHHHHHHHhccc-ccCcCCC-Cc-C----CCCCCcHHHHHHHcCCCCHHHHH-----HHHHHHHH
Confidence 5888999 9988752 11 1 122335688999999995 5555 33446664
No 146
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.12 E-value=2.5e-12 Score=132.91 Aligned_cols=117 Identities=21% Similarity=0.297 Sum_probs=67.7
Q ss_pred EEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEE---CCEeCCh--hc-cccEEEEecCCCCCC----CCC
Q 046786 58 AVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITY---NGKQFSA--EV-KRRTGFVAQNNVFYP----HLT 127 (604)
Q Consensus 58 ~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~---~G~~~~~--~~-~~~i~yv~Q~~~l~~----~lT 127 (604)
.+.+|++++|+||||+|||||+|+|+|..+ +++|+|.+ +|+..+. .. +..+||++|.+.+.+ .+|
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~-----~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt 243 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELG-----LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIE 243 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC------------------------CCCCCEEEETTEEEESSCSCSSCCCTTCC
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhccccc-----ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCC
Confidence 456899999999999999999999999875 56899998 8877643 22 222799999987655 689
Q ss_pred HHHHHH--HHHH------hcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHH
Q 046786 128 VAETLV--FTAL------LRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKR 185 (604)
Q Consensus 128 v~e~l~--f~~~------~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 185 (604)
+ |++. |... ++........+....++++++.++|.+.+.. ....++.|++||
T Consensus 244 ~-e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~-----~y~~lls~~~~~ 303 (307)
T 1t9h_A 244 E-EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYD-----HYVEFMTEIKDR 303 (307)
T ss_dssp H-HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHH-----HHHHHHHHHHTT
T ss_pred H-HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHH-----HHHHHHHHHhhc
Confidence 9 8883 3311 1211111122233568899999999764331 223677777763
No 147
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.10 E-value=1.9e-14 Score=146.81 Aligned_cols=128 Identities=20% Similarity=0.268 Sum_probs=90.4
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----hccccEEEEecCC-CC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----EVKRRTGFVAQNN-VF 122 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~-~l 122 (604)
...+++++++.+++| ++|.||||||||||+|+|+|... .|.|.++|.++.. ...+.+++++|.. ..
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~-------~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~ 102 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG-------LNFISVKGPELLNMYVGESERAVRQVFQRAKNS 102 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT-------CEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC-------CCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhc
Confidence 345899999999999 99999999999999999999874 3789999987642 2345678888874 45
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEe
Q 046786 123 YPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLD 202 (604)
Q Consensus 123 ~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLD 202 (604)
.|.+++.|++......+ ... ... .+.+..+ +....|||||+||+.|++++.++|++| |
T Consensus 103 ~p~i~~~Deid~~~~~r-----~~~----~~~------~~~~~~~-----~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D 160 (274)
T 2x8a_A 103 APCVIFFDEVDALCPRR-----SDR----ETG------ASVRVVN-----QLLTEMDGLEARQQVFIMAATNRPDII--D 160 (274)
T ss_dssp CSEEEEEETCTTTCC------------------------CTTHHH-----HHHHHHHTCCSTTCEEEEEEESCGGGS--C
T ss_pred CCCeEeeehhhhhhccc-----CCC----cch------HHHHHHH-----HHHHhhhcccccCCEEEEeecCChhhC--C
Confidence 56666666665321110 000 000 0122222 344589999999999999999999985 8
Q ss_pred CCCC
Q 046786 203 EPTS 206 (604)
Q Consensus 203 EPts 206 (604)
||+.
T Consensus 161 ~al~ 164 (274)
T 2x8a_A 161 PAIL 164 (274)
T ss_dssp HHHH
T ss_pred Hhhc
Confidence 8863
No 148
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.04 E-value=2.2e-14 Score=139.16 Aligned_cols=153 Identities=20% Similarity=0.289 Sum_probs=83.6
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCCCC--------CCCccccEEEECCEeC---Ch-hccccEEEEecCCCCCCCCC
Q 046786 60 SPGELLAILGPSGCGKTTLLTALGGRLSNG--------KDTVTQGHITYNGKQF---SA-EVKRRTGFVAQNNVFYPHLT 127 (604)
Q Consensus 60 ~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~--------~~~~~~G~I~~~G~~~---~~-~~~~~i~yv~Q~~~l~~~lT 127 (604)
++|++++|+||||||||||+|+|+|.++.. ...|..|+ ++|.+. +. .+++.+ .|+..++ ..+
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~-~~~ 75 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIE-HAE 75 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEE-EEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEe-eee
Confidence 589999999999999999999999975310 00134565 356543 11 233322 3433322 223
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHH----HHHHHH-HHhhCCCeEEEe
Q 046786 128 VAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERK----RISIGQ-ELLINPSLLFLD 202 (604)
Q Consensus 128 v~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq----Rvsia~-~L~~~p~illLD 202 (604)
+.+|+ ++ .+++ .+++.++.-. ....+ + ++ .|-++ ++ .++ +++.+|++++||
T Consensus 76 ~~~n~-~g--------~~~~----~i~~~~~~~~-~~~~~--~------~~-~g~~~~~~~~~-~~~~~~l~~p~~~ild 131 (198)
T 1lvg_A 76 FSGNL-YG--------TSKE----AVRAVQAMNR-ICVLD--V------DL-QGVRSIKKTDL-CPIYIFVQPPSLDVLE 131 (198)
T ss_dssp ETTEE-EE--------EEHH----HHHHHHHTTC-EEEEE--C------CH-HHHHHHTTSSC-CCEEEEEECSCHHHHH
T ss_pred ecCcc-CC--------CCHH----HHHHHHHcCC-cEEEE--C------CH-HHHHHHHhcCC-CcEEEEEeCCCHHHHH
Confidence 33332 11 1222 2333333210 00001 0 00 01111 11 344 677788888889
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEE
Q 046786 203 EPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILLL 251 (604)
Q Consensus 203 EPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~ll 251 (604)
|+|+++|..+...|.+.|++..++ +...|.+ ..+|.++++
T Consensus 132 e~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivn 171 (198)
T 1lvg_A 132 QRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIIN 171 (198)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEEC
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEEC
Confidence 999999999999999999887653 2334632 468988776
No 149
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.99 E-value=2.3e-11 Score=120.41 Aligned_cols=59 Identities=20% Similarity=0.277 Sum_probs=44.8
Q ss_pred hCCCeEEEeCCCCCC--CHHHHHHHHHHHHHHH-hCCCEEEEEecCCchH-------HHhhcCeEEEEe
Q 046786 194 INPSLLFLDEPTSGL--DSTMAKKILVSLSKLA-EGGRTILMTIHQPASS-------LFYMFNKILLLS 252 (604)
Q Consensus 194 ~~p~illLDEPtsgL--D~~~~~~i~~~l~~la-~~g~tvi~~~Hq~~~~-------i~~~~d~v~ll~ 252 (604)
.+|+++++|+|++.+ |+....+.+..|.+++ +.|.|||+++|..... +.+.+|.++.|.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~ 195 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLD 195 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEE
Confidence 589999999999988 6655566667777765 4699999999976531 457789999983
No 150
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.99 E-value=2.3e-11 Score=125.95 Aligned_cols=86 Identities=16% Similarity=0.215 Sum_probs=71.2
Q ss_pred ceeeceEEEE-------------------ecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEE---CCEeCCh
Q 046786 50 MILKGVSGAV-------------------SPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITY---NGKQFSA 107 (604)
Q Consensus 50 ~iL~~vs~~i-------------------~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~---~G~~~~~ 107 (604)
.+++++|+.+ ++|+++||+||||||||||+++|+|++.. .|++|+|.+ +|.....
T Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~---~~~~G~i~vi~~d~~~~~~ 125 (308)
T 1sq5_A 49 PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSR---WPEHRRVELITTDGFLHPN 125 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTT---STTCCCEEEEEGGGGBCCH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhh---CCCCCeEEEEecCCccCcH
Confidence 5889999887 89999999999999999999999997641 146899999 8887654
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhc
Q 046786 108 EVKRRTGFVAQNNVFYPHLTVAETLVFTALLR 139 (604)
Q Consensus 108 ~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~ 139 (604)
..++.+|++ |+..+++.+|+.+++.+...++
T Consensus 126 ~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 126 QVLKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp HHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred HHHHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 445668888 8777788899999998876654
No 151
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.97 E-value=2.7e-10 Score=117.72 Aligned_cols=113 Identities=15% Similarity=0.223 Sum_probs=80.7
Q ss_pred eEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHH
Q 046786 55 VSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTVAETLVF 134 (604)
Q Consensus 55 vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~f 134 (604)
+++..++|++++|+|||||||||+++.|++.+. +..|+|.+.+.+.... + ..|
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~-----~~g~kV~lv~~D~~r~-----~-------------a~e---- 149 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV-----DEGKSVVLAAADTFRA-----A-------------AIE---- 149 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEEECTTCH-----H-------------HHH----
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH-----hcCCEEEEEccccccH-----H-------------HHH----
Confidence 455668999999999999999999999999874 3467787776553110 0 011
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHH---HHHHHHhhCCCeEEEeCCCCCCCHH
Q 046786 135 TALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRI---SIGQELLINPSLLFLDEPTSGLDST 211 (604)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv---sia~~L~~~p~illLDEPtsgLD~~ 211 (604)
....+.+.+|+.. ....|||+.+++ ++++++..+|+++++|||.. ..
T Consensus 150 -----------------qL~~~~~~~gl~~----------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~ 199 (306)
T 1vma_A 150 -----------------QLKIWGERVGATV----------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LH 199 (306)
T ss_dssp -----------------HHHHHHHHHTCEE----------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CS
T ss_pred -----------------HHHHHHHHcCCcE----------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hh
Confidence 1233455566642 225689999999 89999999999999999974 34
Q ss_pred HHHHHHHHHHHHH
Q 046786 212 MAKKILVSLSKLA 224 (604)
Q Consensus 212 ~~~~i~~~l~~la 224 (604)
....+++.|+++.
T Consensus 200 ~~~~l~~eL~~l~ 212 (306)
T 1vma_A 200 TKKNLMEELRKVH 212 (306)
T ss_dssp CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 4556666666654
No 152
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.97 E-value=2.2e-10 Score=124.88 Aligned_cols=179 Identities=14% Similarity=0.126 Sum_probs=112.5
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCcccc-EEEECCEeCCh-hcc-ccEEEEecCCCCCCC
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQG-HITYNGKQFSA-EVK-RRTGFVAQNNVFYPH 125 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G-~I~~~G~~~~~-~~~-~~i~yv~Q~~~l~~~ 125 (604)
-..|+++.+-+++|+++.|.|+||+|||||+..+++... +..| .|.+.+.+.+. .+. +..+....
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~-----~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~------- 257 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA-----TKTNENVAIFSLEMSAQQLVMRMLCAEGN------- 257 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH-----HHSSCCEEEEESSSCHHHHHHHHHHHHHT-------
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-----HhCCCcEEEEECCCCHHHHHHHHHHHHcC-------
Confidence 356888888899999999999999999999999998642 1123 44444333322 111 10000000
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHh--hCCCeEEEeC
Q 046786 126 LTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELL--INPSLLFLDE 203 (604)
Q Consensus 126 lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~--~~p~illLDE 203 (604)
... +.+ +.+ ..+.++ .+++.+.++.++..+..- ....++|.+|.+ +.++.++ .+|+++++|+
T Consensus 258 ~~~-~~l------~~g-~l~~~~-~~~~~~a~~~l~~~~l~i-----~d~~~~s~~~i~--~~~~~l~~~~~~~livID~ 321 (454)
T 2r6a_A 258 INA-QNL------RTG-KLTPED-WGKLTMAMGSLSNAGIYI-----DDTPSIRVSDIR--AKCRRLKQESGLGMIVIDY 321 (454)
T ss_dssp CCH-HHH------HTS-CCCHHH-HHHHHHHHHHHHSSCEEE-----ECCTTCCHHHHH--HHHHHHHTTTCCCEEEEEC
T ss_pred CCH-HHH------hcC-CCCHHH-HHHHHHHHHHHhcCCEEE-----ECCCCCCHHHHH--HHHHHHHHHcCCCEEEEcc
Confidence 000 011 111 233333 335555666665433221 123479999987 5677776 6899999999
Q ss_pred CCCCCCH--------HHHHHHHHHHHHHHhC-CCEEEEEec---------C--Cc-------hHHHhhcCeEEEEecCCe
Q 046786 204 PTSGLDS--------TMAKKILVSLSKLAEG-GRTILMTIH---------Q--PA-------SSLFYMFNKILLLSSDGS 256 (604)
Q Consensus 204 PtsgLD~--------~~~~~i~~~l~~la~~-g~tvi~~~H---------q--~~-------~~i~~~~d~v~ll~~~G~ 256 (604)
++...++ ....++.+.|++++++ |.+||+++| + |. ..+.+.+|.+++| ..++
T Consensus 322 l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l-~r~~ 400 (454)
T 2r6a_A 322 LQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFL-YRDD 400 (454)
T ss_dssp GGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEE-EETT
T ss_pred HHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEE-eccc
Confidence 9987742 3446788888998864 999999999 2 43 1467789999999 5443
No 153
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.90 E-value=3.5e-09 Score=108.92 Aligned_cols=118 Identities=16% Similarity=0.093 Sum_probs=83.4
Q ss_pred eceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHH
Q 046786 53 KGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTVAETL 132 (604)
Q Consensus 53 ~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l 132 (604)
+++++. +|++++++|+||+||||+++.|++.+. +..|+|.+.+.+...... + +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~-----~~~~~v~l~~~d~~~~~~-----------------~-~ql 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK-----GKGRRPLLVAADTQRPAA-----------------R-EQL 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH-----HTTCCEEEEECCSSCHHH-----------------H-HHH
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEecCCcccHhH-----------------H-HHH
Confidence 678888 999999999999999999999999874 346888887766421100 0 000
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCC-CCCCCHH
Q 046786 133 VFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEP-TSGLDST 211 (604)
Q Consensus 133 ~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEP-tsgLD~~ 211 (604)
..+.+..|+..... + .+-.-.+.+|..|+.+...+++++++||| ++|+|..
T Consensus 146 ---------------------~~~~~~~~l~~~~~---~----~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~ 197 (295)
T 1ls1_A 146 ---------------------RLLGEKVGVPVLEV---M----DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEP 197 (295)
T ss_dssp ---------------------HHHHHHHTCCEEEC---C----TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHH
T ss_pred ---------------------HHhcccCCeEEEEc---C----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHH
Confidence 01223345542210 0 12234466788999888899999999999 9999998
Q ss_pred HHHHHHHHHHHH
Q 046786 212 MAKKILVSLSKL 223 (604)
Q Consensus 212 ~~~~i~~~l~~l 223 (604)
...++.+..+.+
T Consensus 198 ~~~~l~~~~~~~ 209 (295)
T 1ls1_A 198 LMGELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhc
Confidence 888887777665
No 154
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.89 E-value=5.2e-13 Score=135.99 Aligned_cols=123 Identities=17% Similarity=0.238 Sum_probs=84.7
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----hccccEEEEecCCC-CC
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----EVKRRTGFVAQNNV-FY 123 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~-l~ 123 (604)
..+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.++.. ...+.+++++|... ..
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-------~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 132 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-------VPFITASGSDFVEMFVGVGAARVRDLFETAKRHA 132 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-------CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-------CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence 45789999999999 89999999999999999999874 6899999876532 22345677888753 56
Q ss_pred CCCCHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCe
Q 046786 124 PHLTVAETLVFTALLRLPN-SLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSL 198 (604)
Q Consensus 124 ~~lTv~e~l~f~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~i 198 (604)
|.+++.|++......+... ....++..+.+.+++ ..|||||+||+.+++++..+|++
T Consensus 133 ~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 133 PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp SEEEEEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred CcEEehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh
Confidence 6778888885432111100 001112222233322 26899999999999999999876
No 155
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.86 E-value=8.1e-13 Score=132.49 Aligned_cols=123 Identities=17% Similarity=0.230 Sum_probs=83.6
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----hccccEEEEecCC-CCC
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----EVKRRTGFVAQNN-VFY 123 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~-~l~ 123 (604)
..+++++++.+++| ++|+||||+|||||+++|++... .|.+.++|.++.. ...+.+++++|.. ...
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-------~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 108 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-------VPFITASGSDFVEMFVGVGAARVRDLFETAKRHA 108 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-------CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-------CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence 45789999999999 99999999999999999999764 6889998876522 2234567778864 355
Q ss_pred CCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCe
Q 046786 124 PHLTVAETLVFTALLRLP-NSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSL 198 (604)
Q Consensus 124 ~~lTv~e~l~f~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~i 198 (604)
|.+++.|++......+.. .....++..+.+.+++ ..|||||+||+.+++++..+|++
T Consensus 109 ~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 109 PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp SEEEEEETHHHHHC---------CHHHHHHHHHHH------------------HHHHTCCTTCCEEEEEEESCGGG
T ss_pred CeEEEehhhhhhhcccCccccccchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEccCCchh
Confidence 667777777433211110 0001122222333332 26889999999999999999986
No 156
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.86 E-value=3.4e-09 Score=111.51 Aligned_cols=154 Identities=19% Similarity=0.314 Sum_probs=89.7
Q ss_pred eeeceE--EEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCH
Q 046786 51 ILKGVS--GAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTV 128 (604)
Q Consensus 51 iL~~vs--~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv 128 (604)
-|+.+- +-+++|+++.|.||||+|||||+..++..... ..| .+.|+.-+..+-+
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~-----~g~---------------~vlyi~~E~~~~~---- 103 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQA-----AGG---------------IAAFIDAEHALDP---- 103 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH-----TTC---------------CEEEEESSCCCCH----
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHh-----CCC---------------eEEEEECCCCcCH----
Confidence 344443 47899999999999999999998888764320 011 2445444322110
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhC--CCeEEEeCCCC
Q 046786 129 AETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLIN--PSLLFLDEPTS 206 (604)
Q Consensus 129 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~--p~illLDEPts 206 (604)
. ... .+|+.. .+-.+- ...+.. +-+.++++++.+ |+++++|||++
T Consensus 104 --~--~a~----------------------~lG~~~-~~l~i~----~~~~~e--~~l~~~~~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 104 --E--YAK----------------------KLGVDT-DSLLVS----QPDTGE--QALEIADMLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp --H--HHH----------------------HTTCCG-GGCEEE----CCSSHH--HHHHHHHHHHTTTCCSEEEEECGGG
T ss_pred --H--HHH----------------------HcCCCH-HHeEEe----cCCCHH--HHHHHHHHHHhcCCCCEEEEcChHh
Confidence 0 111 112110 000010 112332 345678888755 99999999999
Q ss_pred CC----------CH---HHHHHHHHHHHHH----HhCCCEEEEEecCCch---------------HHHhhcCeEEEEecC
Q 046786 207 GL----------DS---TMAKKILVSLSKL----AEGGRTILMTIHQPAS---------------SLFYMFNKILLLSSD 254 (604)
Q Consensus 207 gL----------D~---~~~~~i~~~l~~l----a~~g~tvi~~~Hq~~~---------------~i~~~~d~v~ll~~~ 254 (604)
.+ |+ ..+..+.+.++++ .+.|.|||++.|.... .+...+|.++.+ +.
T Consensus 151 l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~l-rr 229 (349)
T 2zr9_A 151 LVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDV-RR 229 (349)
T ss_dssp CCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEE-EE
T ss_pred hcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEE-EE
Confidence 98 33 2233455555555 2459999999995431 256778988888 66
Q ss_pred CeEEEecC
Q 046786 255 GSSLYFGK 262 (604)
Q Consensus 255 G~~v~~G~ 262 (604)
++++..|+
T Consensus 230 ~~~~k~g~ 237 (349)
T 2zr9_A 230 IETLKDGT 237 (349)
T ss_dssp EEEECSSS
T ss_pred eeeeecCc
Confidence 66655443
No 157
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.85 E-value=4.9e-10 Score=122.22 Aligned_cols=52 Identities=12% Similarity=0.071 Sum_probs=47.8
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCC
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFS 106 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~ 106 (604)
..+|+|+|+++++ ++++|+|||||||||||++|+|+++ |++|+|.++|+++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI-----PDLTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC-----CCTTTCCCCCTTSC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC-----CCCCEEEECCEEcc
Confidence 4589999999999 9999999999999999999999885 57999999998764
No 158
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.83 E-value=4.9e-10 Score=107.14 Aligned_cols=143 Identities=19% Similarity=0.195 Sum_probs=77.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCCc------cccEEEECCEeCCh------hccccEEEEecCCCC-CCCCCHHH
Q 046786 64 LLAILGPSGCGKTTLLTALGGRLSNGKDTV------TQGHITYNGKQFSA------EVKRRTGFVAQNNVF-YPHLTVAE 130 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~------~~G~I~~~G~~~~~------~~~~~i~yv~Q~~~l-~~~lTv~e 130 (604)
.++|+|+||||||||++.++|...+....| ++|+|.++|+++.. ...+..++++|.... ...++|.+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 589999999999999999999764321112 47899999976421 111222233221000 00011111
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHH---HHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 046786 131 TLVFTALLRLPNSLKREEKVLHAEAVI---NQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSG 207 (604)
Q Consensus 131 ~l~f~~~~~~~~~~~~~~~~~~v~~~l---~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsg 207 (604)
.. ... ..+.+..++ ....-.+..--.++++ .+|..-..+++.+|++|+.+|+++++| ||+
T Consensus 111 ~~------------~~~-s~~~~~~~~~~~~~~~~~~~~i~~v~nK--~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sa 173 (191)
T 1oix_A 111 IA------------KHL-TYENVERWLKELRDHADSNIVIMLVGNK--SDLRHLRAVPTDEARAFAEKNGLSFIE--TSA 173 (191)
T ss_dssp TT------------CHH-HHHTHHHHHHHHHHHSCTTCEEEEEEEC--GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCT
T ss_pred Cc------------CHH-HHHHHHHHHHHHHHhcCCCCcEEEEEEC--cccccccccCHHHHHHHHHHcCCEEEE--EeC
Confidence 10 000 000011111 1111111111122322 123222234578899999999999999 999
Q ss_pred CCHHHHHHHHHHHHHH
Q 046786 208 LDSTMAKKILVSLSKL 223 (604)
Q Consensus 208 LD~~~~~~i~~~l~~l 223 (604)
+|.....++++.|.+.
T Consensus 174 ld~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 174 LDSTNVEAAFQTILTE 189 (191)
T ss_dssp TTCTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999988763
No 159
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.83 E-value=1e-10 Score=128.40 Aligned_cols=165 Identities=17% Similarity=0.159 Sum_probs=99.5
Q ss_pred ceEEEEecCeEEEEECCCCCcHHHHHHHHHc-CCCCCCCCccccEEEECCEeCCh-hccccEEEEecCCCCCCCC--CHH
Q 046786 54 GVSGAVSPGELLAILGPSGCGKTTLLTALGG-RLSNGKDTVTQGHITYNGKQFSA-EVKRRTGFVAQNNVFYPHL--TVA 129 (604)
Q Consensus 54 ~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g-~~~~~~~~~~~G~I~~~G~~~~~-~~~~~i~yv~Q~~~l~~~l--Tv~ 129 (604)
.+++.+.++..++|.|++||||||+|++|.. ++. ..+.|++.+.+.+... ++.. ...+|++ +|.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~----~~~p~~v~l~liDpK~~el~~--------~~~lPhl~~~Vv 226 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLY----KAQPEDVRFIMIDPKMLELSV--------YEGIPHLLTEVV 226 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHT----TCCTTTEEEEEECCSSSGGGG--------GTTCTTBSSSCB
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHH----hCCCceEEEEEECCchhhhhh--------hccCCcccceee
Confidence 4677788999999999999999999999875 222 1234777777666532 1111 0011111 122
Q ss_pred HHHHHHHH-hcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHH----------HHHHHHhhCCC-
Q 046786 130 ETLVFTAL-LRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRI----------SIGQELLINPS- 197 (604)
Q Consensus 130 e~l~f~~~-~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv----------sia~~L~~~p~- 197 (604)
++...+.. ++ ...++.++| .++++..|+.+..+-. .+....+||||+||. .+++++...|.
T Consensus 227 td~~~a~~~L~----~~~~EmerR-~~ll~~~Gv~~i~~yn--~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~i 299 (512)
T 2ius_A 227 TDMKDAANALR----WCVNEMERR-YKLMSALGVRNLAGYN--EKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYI 299 (512)
T ss_dssp CSHHHHHHHHH----HHHHHHHHH-HHHHHHTTCSSHHHHH--HHHHHHHHTTCCCBCTTC---------CCBCCCCCEE
T ss_pred cCHHHHHHHHH----HHHHHHHHH-HHHHHHcCCccHHHHH--HHHHHHhhcCCcccccccccccchhccccccccCCcE
Confidence 22222111 11 112344444 3778888987653210 011235788887652 34556677898
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHh----CCCEEEEEecCCc
Q 046786 198 LLFLDEPTSGLDSTMAKKILVSLSKLAE----GGRTILMTIHQPA 238 (604)
Q Consensus 198 illLDEPtsgLD~~~~~~i~~~l~~la~----~g~tvi~~~Hq~~ 238 (604)
++++||++.-+|.. ...+.+.|.++++ .|.++|++||.|+
T Consensus 300 vlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 300 VVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 78999999988843 3456666666653 2789999999997
No 160
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.80 E-value=2.2e-10 Score=110.39 Aligned_cols=66 Identities=23% Similarity=0.312 Sum_probs=46.2
Q ss_pred EEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----hccccEEEEecCCCCCCCCCHHH
Q 046786 56 SGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----EVKRRTGFVAQNNVFYPHLTVAE 130 (604)
Q Consensus 56 s~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~~lTv~e 130 (604)
|+++++|++++|+||||||||||+++|+|+.+ .+.+++..... ..++.++|++|++..++.+++.+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA---------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEG 70 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS---------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHT
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC---------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcC
Confidence 56788999999999999999999999999853 35566655432 23456889999866555444443
No 161
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.78 E-value=6e-09 Score=107.18 Aligned_cols=141 Identities=14% Similarity=0.175 Sum_probs=86.0
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhc
Q 046786 60 SPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTVAETLVFTALLR 139 (604)
Q Consensus 60 ~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~ 139 (604)
++|++++++||||+||||+++.|++.+. +++| +++.++.+|.. ..+..|.+...+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~-----~~~G--------------~~V~lv~~D~~---r~~a~eqL~~~~~-- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM-----LEKH--------------KKIAFITTDTY---RIAAVEQLKTYAE-- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH-----HTTC--------------CCEEEEECCCS---STTHHHHHHHHHT--
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH-----HhcC--------------CEEEEEecCcc---cchHHHHHHHHHH--
Confidence 5799999999999999999999999874 2245 24677777652 2355665544221
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH
Q 046786 140 LPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVS 219 (604)
Q Consensus 140 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~ 219 (604)
..|+.... ..+. +.-+.+++ .+.+|+++|+| |+|+|+.....+.++
T Consensus 159 -------------------~~gl~~~~----------~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el 204 (296)
T 2px0_A 159 -------------------LLQAPLEV----------CYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDEL 204 (296)
T ss_dssp -------------------TTTCCCCB----------CSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHH
T ss_pred -------------------hcCCCeEe----------cCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHH
Confidence 12332110 1122 22344454 45999999999 999998766544444
Q ss_pred HHHHH---hCCCEEEE-EecCCchHHHhhcCeEEEEecCCeEEEe
Q 046786 220 LSKLA---EGGRTILM-TIHQPASSLFYMFNKILLLSSDGSSLYF 260 (604)
Q Consensus 220 l~~la---~~g~tvi~-~~Hq~~~~i~~~~d~v~ll~~~G~~v~~ 260 (604)
.+-+. ..+.++++ ++|+. .++.+.++++-.+ ..+.++..
T Consensus 205 ~~~l~~~~~~~~~lVl~at~~~-~~~~~~~~~~~~l-~~~giVlt 247 (296)
T 2px0_A 205 KETIPFESSIQSFLVLSATAKY-EDMKHIVKRFSSV-PVNQYIFT 247 (296)
T ss_dssp HHHSCCCTTEEEEEEEETTBCH-HHHHHHTTTTSSS-CCCEEEEE
T ss_pred HHHHhhcCCCeEEEEEECCCCH-HHHHHHHHHHhcC-CCCEEEEe
Confidence 33332 12344555 47875 3566666665545 45666543
No 162
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.75 E-value=9.5e-11 Score=132.33 Aligned_cols=161 Identities=17% Similarity=0.169 Sum_probs=99.8
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCC-----
Q 046786 47 EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNV----- 121 (604)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~----- 121 (604)
+...+++++++.+++|+.++|+||||+|||||+++|++.+++. .-|.+.+++.+.+. ....++|+|+...
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~----~~~~~~~~~~~~~~-~~p~i~~~p~g~~~~~~e 119 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE----TLEDILVFPNPEDE-NMPRIKTVPACQGRRIVE 119 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS----SCEEEEEECCTTCT-TSCEEEEEETTHHHHHHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc----cCCeEEEeCCcccc-cCCcEEEEecchHHHHHH
Confidence 4566899999999999999999999999999999999988631 24889888876543 3456889887531
Q ss_pred -----------------CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHH
Q 046786 122 -----------------FYPHLTVAETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERK 184 (604)
Q Consensus 122 -----------------l~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 184 (604)
.+..+++.+|+........+...-. +. ....-+.+|.-+... ....++|+|++|
T Consensus 120 ~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~-~~---~~~~~~L~G~~~~~~-----~~~g~~~~g~~~ 190 (604)
T 3k1j_A 120 KYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFID-AT---GAHAGALLGDVRHDP-----FQSGGLGTPAHE 190 (604)
T ss_dssp HHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEE-CT---TCCHHHHHCEECCCC-----C----CCCCGGG
T ss_pred HHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEE-cC---CCCHHhcCceEEech-----hhcCCccccccc
Confidence 1111111111110000000000000 00 000111122111110 112579999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 046786 185 RISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSK 222 (604)
Q Consensus 185 Rvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~ 222 (604)
++..+.....++.+||+||... |++.....+.+.|.+
T Consensus 191 ~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 191 RVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp GEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999999999988 899888888888764
No 163
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.64 E-value=6.2e-10 Score=109.88 Aligned_cols=39 Identities=33% Similarity=0.356 Sum_probs=22.9
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHH-cCCC
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALG-GRLS 87 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~-g~~~ 87 (604)
.+..+++|+++++|++++|+||||||||||+++|+ |+.+
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 45789999999999999999999999999999999 9864
No 164
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.60 E-value=1.5e-09 Score=107.25 Aligned_cols=58 Identities=14% Similarity=0.195 Sum_probs=41.3
Q ss_pred EEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh------------hccccEEEEecC
Q 046786 56 SGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA------------EVKRRTGFVAQN 119 (604)
Q Consensus 56 s~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~------------~~~~~i~yv~Q~ 119 (604)
++++++ ++++|+|||||||||||++|+|.+. |++|+|.++|.++.. ..++.++||+|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~-----~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI-----PDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS-----CCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc-----cCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 566677 8999999999999999999999885 568999999987621 135679999984
No 165
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.58 E-value=4.2e-08 Score=107.16 Aligned_cols=59 Identities=20% Similarity=0.336 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hCCCEEEEEecCCc
Q 046786 180 GGERKRISIGQELLINPSLLFLDEP----------TSGLDSTMAKKILVSLSKLA----EGGRTILMTIHQPA 238 (604)
Q Consensus 180 gGerqRvsia~~L~~~p~illLDEP----------tsgLD~~~~~~i~~~l~~la----~~g~tvi~~~Hq~~ 238 (604)
|++++|..++++....|.+||+||+ ++|.|......+.++|..+- +.+..||.+||+|.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 5778888899999999999999999 34677776666777777663 34789999999984
No 166
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.57 E-value=3.2e-11 Score=128.08 Aligned_cols=156 Identities=14% Similarity=0.113 Sum_probs=90.6
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCC-CCCCCC
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNV-FYPHLT 127 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~-l~~~lT 127 (604)
..+|+++|+.+++|++++|.||||||||||+++|+|.. +|++..-..+ .......+|+++|... ++..++
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~--------~g~~~~~~~~-~~~~~~~lg~~~q~~~~l~dd~~ 226 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC--------GGKALNVNLP-LDRLNFELGVAIDQFLVVFEDVK 226 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH--------CCEEECCSSC-TTTHHHHHGGGTTCSCEEETTCC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc--------CCcEEEEecc-chhHHHHHHHhcchhHHHHHHHH
Confidence 46899999999999999999999999999999999854 5777652211 1122223667777653 233333
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH---cCCCc-cc---ccc--cc--CccCCCcCHHHHHHHHHHHHHhhCC
Q 046786 128 VAETLVFTALLRLPNSLKREEKVLHAEAVINQ---LGLAR-CR---NSI--IG--GRLVRGLSGGERKRISIGQELLINP 196 (604)
Q Consensus 128 v~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~---lgL~~-~~---~~~--vg--~~~~~~LSgGerqRvsia~~L~~~p 196 (604)
....+. -++... ........+.+.++- +.+.. .. +.. .| +.....+++|+++|+..+.+++.+|
T Consensus 227 ~~~~~~----r~l~~~-~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~p 301 (377)
T 1svm_A 227 GTGGES----RDLPSG-QGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKD 301 (377)
T ss_dssp CSTTTT----TTCCCC-SHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCH
T ss_pred HHHHHH----hhcccc-CcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCC
Confidence 221110 001000 000011123333331 00110 00 000 00 1345578999999999888888899
Q ss_pred CeEE-EeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 046786 197 SLLF-LDEPTSGLDSTMAKKILVSLSKLAEGGRT 229 (604)
Q Consensus 197 ~ill-LDEPtsgLD~~~~~~i~~~l~~la~~g~t 229 (604)
++++ ||+|+. ..++++.++|++
T Consensus 302 DLliyLd~~~~-----------~l~~RL~~Rg~t 324 (377)
T 1svm_A 302 YLKHCLERSEF-----------LLEKRIIQSGIA 324 (377)
T ss_dssp HHHHHHHTCTH-----------HHHTTCTTCHHH
T ss_pred CeEEEEeCCHH-----------HHHHHHHHcCcc
Confidence 9877 999987 345555555544
No 167
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.56 E-value=3.1e-08 Score=94.87 Aligned_cols=37 Identities=22% Similarity=0.263 Sum_probs=32.7
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 046786 186 ISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLA 224 (604)
Q Consensus 186 vsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la 224 (604)
...|++++.+|++.++| ||++|.....++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999998887754
No 168
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.49 E-value=6.2e-08 Score=101.92 Aligned_cols=77 Identities=16% Similarity=0.161 Sum_probs=47.5
Q ss_pred eeeceE--EEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEE-EECCEeCC-hhccccEEEEecCCCCCCCC
Q 046786 51 ILKGVS--GAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHI-TYNGKQFS-AEVKRRTGFVAQNNVFYPHL 126 (604)
Q Consensus 51 iL~~vs--~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I-~~~G~~~~-~~~~~~i~yv~Q~~~l~~~l 126 (604)
-|+.+- +=+++|+++.|.||||||||||+..+++... +..|.+ ++++.... ....+++|+.+|+..+....
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~-----~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~ 122 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQ-----KMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPD 122 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHH-----HTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCS
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHH-----hcCCeEEEEecccccchHHHHHcCCchhhhhhhhcc
Confidence 455543 4789999999999999999999999998653 124544 45554432 22233455555544333333
Q ss_pred CHHHHH
Q 046786 127 TVAETL 132 (604)
Q Consensus 127 Tv~e~l 132 (604)
++.+.+
T Consensus 123 ~~e~~l 128 (356)
T 3hr8_A 123 HGEQAL 128 (356)
T ss_dssp SHHHHH
T ss_pred CHHHHH
Confidence 444433
No 169
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.47 E-value=5.9e-09 Score=100.51 Aligned_cols=58 Identities=19% Similarity=0.249 Sum_probs=40.9
Q ss_pred EEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh---hccccEEEEecCCCC
Q 046786 56 SGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA---EVKRRTGFVAQNNVF 122 (604)
Q Consensus 56 s~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~---~~~~~i~yv~Q~~~l 122 (604)
.+..++|++++|+||||||||||+++|++.+ |.+.++|.++.. ..+...|+++|+...
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~---------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~ 83 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET---------GLEFAEADAFHSPENIATMQRGIPLTDEDR 83 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH---------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh---------CCeEEcccccccHHHHHHHhcCCCCCCccc
Confidence 3556789999999999999999999999863 778888877642 112245777776433
No 170
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.46 E-value=1.3e-07 Score=99.97 Aligned_cols=151 Identities=18% Similarity=0.221 Sum_probs=90.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCC------CCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCHH---HHHHH
Q 046786 64 LLAILGPSGCGKTTLLTALGGRLSNG------KDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTVA---ETLVF 134 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~~~~------~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~---e~l~f 134 (604)
.++|+|++|||||||+|.|+|..... ...++.|.|.++|.++. +....|++.|.+. ..|. .++..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~--l~DT~G~i~~lp~----~lve~f~~tl~~ 254 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM--LVDTVGFIRGIPP----QIVDAFFVTLSE 254 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE--EEECCCBCSSCCG----GGHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE--EEeCCCchhcCCH----HHHHHHHHHHHH
Confidence 48999999999999999999975310 11256799999986542 2233455544221 1121 11111
Q ss_pred HHHhc-----CCCCCCH---HHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHH----HHH-hhCCCeEEE
Q 046786 135 TALLR-----LPNSLKR---EEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIG----QEL-LINPSLLFL 201 (604)
Q Consensus 135 ~~~~~-----~~~~~~~---~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia----~~L-~~~p~illL 201 (604)
..... ....... .+..+.+.++++.+++.+..--.|+|+ +.-+|+|+++|+.++ +++ ..+|++
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~--- 330 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDLYKKLDLVEKLSKELYSPIFDV--- 330 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHHHHHHHHHHHHHHHCSCEEEE---
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHHHHHHHHHHHHHHhcCCCCcE---
Confidence 00000 0001112 233345677888888765443333433 445788888988887 444 334454
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh
Q 046786 202 DEPTSGLDSTMAKKILVSLSKLAE 225 (604)
Q Consensus 202 DEPtsgLD~~~~~~i~~~l~~la~ 225 (604)
+|+|++|.....++.+.|.++..
T Consensus 331 -~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 331 -IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp -EECBTTTTBSHHHHHHHHHHHHH
T ss_pred -EEEECCCCcCHHHHHHHHHHHhc
Confidence 89999999999999999988754
No 171
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.39 E-value=4e-07 Score=105.45 Aligned_cols=82 Identities=21% Similarity=0.262 Sum_probs=63.1
Q ss_pred cCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEE-ecCCchHHHhhcCeEEEE
Q 046786 174 LVRGLSGGERKRISIGQELLINPSLLFLDEPTS-GLDSTMAKKILVSLSKLAEGGRTILMT-IHQPASSLFYMFNKILLL 251 (604)
Q Consensus 174 ~~~~LSgGerqRvsia~~L~~~p~illLDEPts-gLD~~~~~~i~~~l~~la~~g~tvi~~-~Hq~~~~i~~~~d~v~ll 251 (604)
.+.-+|.|+.+|..++..++.+++++++|||.. +||......+++.+.+.....++|++| ||++. .+..++++.-++
T Consensus 187 ~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~~~vi 265 (773)
T 2xau_A 187 ILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFNDAPLL 265 (773)
T ss_dssp SEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTSCCEE
T ss_pred CEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcCCCcc
Confidence 355789999999999999999999999999996 999887777777776665556788885 89764 667777754333
Q ss_pred ecCCe
Q 046786 252 SSDGS 256 (604)
Q Consensus 252 ~~~G~ 256 (604)
...|+
T Consensus 266 ~v~gr 270 (773)
T 2xau_A 266 AVPGR 270 (773)
T ss_dssp ECCCC
T ss_pred cccCc
Confidence 24554
No 172
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.29 E-value=4e-07 Score=95.06 Aligned_cols=130 Identities=16% Similarity=0.196 Sum_probs=86.1
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCH
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTV 128 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv 128 (604)
-.-|+.+.+-+++|+++.|.|++|+|||||+..++.... . .| ..+.|+.= .++.
T Consensus 33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a-------~-----~g--------~~Vl~fSl------Ems~ 86 (338)
T 4a1f_A 33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL-------N-----DD--------RGVAVFSL------EMSA 86 (338)
T ss_dssp CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH-------H-----TT--------CEEEEEES------SSCH
T ss_pred ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH-------H-----cC--------CeEEEEeC------CCCH
Confidence 345777777899999999999999999999988876431 0 11 12444332 1233
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 046786 129 AETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGL 208 (604)
Q Consensus 129 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgL 208 (604)
.+.. .++......+++.+..+ ..||.+|.+|+..|...+.++++++.|+|...
T Consensus 87 ~ql~------------------~Rlls~~~~v~~~~l~~--------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s- 139 (338)
T 4a1f_A 87 EQLA------------------LRALSDLTSINMHDLES--------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR- 139 (338)
T ss_dssp HHHH------------------HHHHHHHHCCCHHHHHH--------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-
T ss_pred HHHH------------------HHHHHHhhCCCHHHHhc--------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-
Confidence 2221 22222222222222221 26999999999999999999999999998644
Q ss_pred CHHHHHHHHHHHHHHHh-C-CCEEEEEec
Q 046786 209 DSTMAKKILVSLSKLAE-G-GRTILMTIH 235 (604)
Q Consensus 209 D~~~~~~i~~~l~~la~-~-g~tvi~~~H 235 (604)
..++...++++.+ . |..+|++-|
T Consensus 140 ----i~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 140 ----IEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp ----HHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred ----HHHHHHHHHHHHHhcCCCCEEEEec
Confidence 3467777777765 3 677777754
No 173
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.29 E-value=6.3e-08 Score=97.04 Aligned_cols=62 Identities=21% Similarity=0.239 Sum_probs=48.0
Q ss_pred eeeceEEEEecCeEEEEECCCCCcHHHHHHHHH---cCCCCCCCCccccEEE--------ECCEeCCh-----hccccEE
Q 046786 51 ILKGVSGAVSPGELLAILGPSGCGKTTLLTALG---GRLSNGKDTVTQGHIT--------YNGKQFSA-----EVKRRTG 114 (604)
Q Consensus 51 iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~---g~~~~~~~~~~~G~I~--------~~G~~~~~-----~~~~~i~ 114 (604)
++++.+ ++|++++|+|||||||||++++|+ |... +++|.+. .+|.++.. .+++.++
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~-----~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~ 90 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRL-----LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLD 90 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE-----EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCC
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc-----CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCC
Confidence 444443 789999999999999999999999 7653 6799999 88987732 4567789
Q ss_pred EEecCC
Q 046786 115 FVAQNN 120 (604)
Q Consensus 115 yv~Q~~ 120 (604)
+++|.+
T Consensus 91 ~~~~~~ 96 (252)
T 4e22_A 91 VRFVSQ 96 (252)
T ss_dssp EEEEEE
T ss_pred EEEecC
Confidence 999854
No 174
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.28 E-value=2.2e-07 Score=89.11 Aligned_cols=30 Identities=33% Similarity=0.426 Sum_probs=26.7
Q ss_pred EEecCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046786 58 AVSPGELLAILGPSGCGKTTLLTALGGRLS 87 (604)
Q Consensus 58 ~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~ 87 (604)
++++|++++|+||||||||||+++|++...
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 578999999999999999999999999874
No 175
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.27 E-value=1.5e-08 Score=97.75 Aligned_cols=53 Identities=25% Similarity=0.296 Sum_probs=43.1
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEE--EECCEeCCh
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHI--TYNGKQFSA 107 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I--~~~G~~~~~ 107 (604)
....++.+...++|++++|+||||||||||.++|++++. ..|.+ .++|.++..
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~------~~G~~~~~~d~d~~~~ 66 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY------QKGKLCYILDGDNVRH 66 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEEEHHHHTT
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH------hcCceEEEecCchhhh
Confidence 445566777778999999999999999999999999874 25777 888876543
No 176
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.24 E-value=2.5e-09 Score=117.48 Aligned_cols=129 Identities=18% Similarity=0.233 Sum_probs=84.4
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----hccccEEEEecCCC-CC
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----EVKRRTGFVAQNNV-FY 123 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~-l~ 123 (604)
..+++++++.+++| +.|.||||+|||||+++|++... .+.+.++|.++.. ...+.+..++|... ..
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-------~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~ 123 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-------VPFITASGSDFVEMFVGVGAARVRDLFETAKRHA 123 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-------CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSS
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-------CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcC
Confidence 34788999999999 89999999999999999999764 5788999876532 12234556666543 34
Q ss_pred CCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEe
Q 046786 124 PHLTVAETLVFTALLRLP-NSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLD 202 (604)
Q Consensus 124 ~~lTv~e~l~f~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLD 202 (604)
|.+.+.|++......+.. .....++..+.+.+++. .|||||+|+..|+++..++|++ ||
T Consensus 124 p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD 183 (499)
T 2dhr_A 124 PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LD 183 (499)
T ss_dssp SCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SC
T ss_pred CCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cC
Confidence 445555555321111100 00112333334444443 4678888888888888899987 78
Q ss_pred CCCC
Q 046786 203 EPTS 206 (604)
Q Consensus 203 EPts 206 (604)
|+..
T Consensus 184 ~aLl 187 (499)
T 2dhr_A 184 PALL 187 (499)
T ss_dssp TTTS
T ss_pred cccc
Confidence 8864
No 177
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.20 E-value=1.6e-06 Score=91.35 Aligned_cols=62 Identities=15% Similarity=0.124 Sum_probs=49.1
Q ss_pred CCCcCHHHHHHHHHHHHHhhCCCeEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe--cCCc
Q 046786 175 VRGLSGGERKRISIGQELLINPSLLFLD-EPTSGLDSTMAKKILVSLSKLAEGGRTILMTI--HQPA 238 (604)
Q Consensus 175 ~~~LSgGerqRvsia~~L~~~p~illLD-EPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~--Hq~~ 238 (604)
...+|+||+|++. +.+...++-++++| +|++|+|......+++.+++... ++.+|++. ||..
T Consensus 229 ~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 229 ISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp STTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 4478999998876 55555777789999 99999999998888888877654 67788877 7753
No 178
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.18 E-value=2.9e-07 Score=95.60 Aligned_cols=77 Identities=16% Similarity=0.134 Sum_probs=57.4
Q ss_pred eeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh--------hc-----cccEEEE-e
Q 046786 52 LKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA--------EV-----KRRTGFV-A 117 (604)
Q Consensus 52 L~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~--------~~-----~~~i~yv-~ 117 (604)
++++|+..++|++++|+||||+||||++..|++.+. +..|+|.+.+.+... .+ +..+.++ +
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~-----~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~ 169 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA-----ELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKA 169 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH-----HTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH-----HCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeC
Confidence 478999999999999999999999999999999874 347899998877631 12 4568888 6
Q ss_pred cCCCCCCCCCHHHHHH
Q 046786 118 QNNVFYPHLTVAETLV 133 (604)
Q Consensus 118 Q~~~l~~~lTv~e~l~ 133 (604)
|.....|..++.+++.
T Consensus 170 ~~~~~~p~~~~~~~l~ 185 (320)
T 1zu4_A 170 NKLNADPASVVFDAIK 185 (320)
T ss_dssp SSTTCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH
Confidence 6644444334444443
No 179
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.17 E-value=6.7e-07 Score=84.25 Aligned_cols=36 Identities=33% Similarity=0.357 Sum_probs=32.9
Q ss_pred ee--eceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046786 51 IL--KGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLS 87 (604)
Q Consensus 51 iL--~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~ 87 (604)
.+ +++++.+.+| +++|+||||||||||+++|.+.+.
T Consensus 14 ~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 14 SYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp GGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 45 7899999999 999999999999999999999764
No 180
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.11 E-value=6.2e-07 Score=84.84 Aligned_cols=28 Identities=21% Similarity=0.367 Sum_probs=25.7
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046786 60 SPGELLAILGPSGCGKTTLLTALGGRLS 87 (604)
Q Consensus 60 ~~Ge~~aIlGpsGaGKSTLL~~L~g~~~ 87 (604)
.+|++++|+||||||||||++.|++..+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3689999999999999999999999764
No 181
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.10 E-value=4.9e-07 Score=87.05 Aligned_cols=126 Identities=13% Similarity=0.205 Sum_probs=70.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTVAETLVFTALLRLPNS 143 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~~~~ 143 (604)
+++|+|||||||||+.+.|+++ |...+++.++ .+... + + .
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l----------g~~~id~d~~---~~~~~----~-----~-----------------~- 43 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL----------GVPLVDADVV---AREVV----A-----K-----------------D- 43 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT----------TCCEEEHHHH---HHHTT----C-----S-----------------S-
T ss_pred EEEEECCCCCCHHHHHHHHHHC----------CCcccchHHH---HHHHc----c-----C-----------------C-
Confidence 6899999999999999999983 2223332111 11000 0 0 0
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 046786 144 LKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKL 223 (604)
Q Consensus 144 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l 223 (604)
. ..+.++.+.+|... -.+.|+.+|..++.....+|+.+.++ ++.++|.....+.+.+++.
T Consensus 44 -~-----~~~~~i~~~~g~~~------------~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~ 103 (206)
T 1jjv_A 44 -S-----PLLSKIVEHFGAQI------------LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ 103 (206)
T ss_dssp -C-----HHHHHHHHHHCTTC------------C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC
T ss_pred -h-----HHHHHHHHHhCHHH------------hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc
Confidence 0 12344555566432 13568888999988888887654332 3345555555554444332
Q ss_pred HhCCCEEEEEecCCchH-HHhhcCeEEEE
Q 046786 224 AEGGRTILMTIHQPASS-LFYMFNKILLL 251 (604)
Q Consensus 224 a~~g~tvi~~~Hq~~~~-i~~~~d~v~ll 251 (604)
.+.++|+.+|...+. +...+|.++++
T Consensus 104 --~~~~vv~~~~~l~e~~~~~~~d~vi~l 130 (206)
T 1jjv_A 104 --TAPYTLFVVPLLIENKLTALCDRILVV 130 (206)
T ss_dssp --CSSEEEEECTTTTTTTCGGGCSEEEEE
T ss_pred --CCCEEEEEechhhhcCcHhhCCEEEEE
Confidence 356888888875432 35678888888
No 182
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.07 E-value=1.5e-06 Score=83.52 Aligned_cols=40 Identities=23% Similarity=0.167 Sum_probs=24.8
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 47 EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
+...+++|||+++++|++++|+|||||||||+.+.|++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3456899999999999999999999999999999999865
No 183
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.05 E-value=7.8e-06 Score=85.83 Aligned_cols=44 Identities=11% Similarity=0.016 Sum_probs=35.9
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCCc
Q 046786 194 INPSLLFLDEPTSGLDSTMAKKILVSLSKLAE---GGRTILMTIHQPA 238 (604)
Q Consensus 194 ~~p~illLDEPtsgLD~~~~~~i~~~l~~la~---~g~tvi~~~Hq~~ 238 (604)
.+|.++++||+... |......+.+.+.++.. .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88888888888877665 5789999999874
No 184
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.04 E-value=2.6e-05 Score=79.22 Aligned_cols=73 Identities=22% Similarity=0.364 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH----------HHHHHHHHHHHHHHh----CCCEEEEEecCCc---hHH
Q 046786 179 SGGERKRISIGQELLINPSLLFLDEPTSGLDS----------TMAKKILVSLSKLAE----GGRTILMTIHQPA---SSL 241 (604)
Q Consensus 179 SgGerqRvsia~~L~~~p~illLDEPtsgLD~----------~~~~~i~~~l~~la~----~g~tvi~~~Hq~~---~~i 241 (604)
+++++.|..++.+...+|.+|++||+.+-++. .....++..+..... .+..||.++++|. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 35677777778888889999999999876553 222334444444422 2456788888763 345
Q ss_pred HhhcCeEEEE
Q 046786 242 FYMFNKILLL 251 (604)
Q Consensus 242 ~~~~d~v~ll 251 (604)
...|++.+.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 5567765554
No 185
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.03 E-value=3.5e-07 Score=91.63 Aligned_cols=52 Identities=33% Similarity=0.471 Sum_probs=36.2
Q ss_pred hheeeeE-EEEEeccccccceeeceEEEEec---CeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 32 MLKKVNM-LVIIKNSDEEKMILKGVSGAVSP---GELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 32 ~~~~~~~-~~~~~~~~~~~~iL~~vs~~i~~---Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
+++..|+ ++.+ .+.+.+|+|+|+++++ |+.++|+|+|||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~---~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPF---DEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEe---cCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4566665 4433 1446799999999999 9999999999999999999999865
No 186
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.00 E-value=1.9e-06 Score=98.21 Aligned_cols=131 Identities=15% Similarity=0.107 Sum_probs=77.8
Q ss_pred EEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCCh----hccccEEEEecCCCCCCCCCHHHH
Q 046786 56 SGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSA----EVKRRTGFVAQNNVFYPHLTVAET 131 (604)
Q Consensus 56 s~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~~lTv~e~ 131 (604)
|+.+++|+.++|+|++|+|||||++.|.+.... ....|+| .+|....+ +.++.+++.+|...+... ++.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~---~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~-- 75 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGA---KERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHR-- 75 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTS---SSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEE--
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCC---CCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEE--
Confidence 346788999999999999999999999976532 1246777 56655432 234566666665433221 100
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH
Q 046786 132 LVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGLDST 211 (604)
Q Consensus 132 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~ 211 (604)
.+..||. |.. .++ .......-..++.++++| |+.|+|+.
T Consensus 76 -------------------------------~nliDTp-G~~---~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~q 114 (665)
T 2dy1_A 76 -------------------------------VFLLDAP-GYG---DFV-----GEIRGALEAADAALVAVS-AEAGVQVG 114 (665)
T ss_dssp -------------------------------EEEEECC-CSG---GGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHH
T ss_pred -------------------------------EEEEeCC-Ccc---chH-----HHHHHHHhhcCcEEEEEc-CCcccchh
Confidence 0112221 111 111 111222235678889999 99999987
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCc
Q 046786 212 MAKKILVSLSKLAEGGRTILMTIHQPA 238 (604)
Q Consensus 212 ~~~~i~~~l~~la~~g~tvi~~~Hq~~ 238 (604)
+. +.++.+.+.|..+|+++|...
T Consensus 115 t~----~~~~~~~~~~ip~ilv~NKiD 137 (665)
T 2dy1_A 115 TE----RAWTVAERLGLPRMVVVTKLD 137 (665)
T ss_dssp HH----HHHHHHHHTTCCEEEEEECGG
T ss_pred HH----HHHHHHHHccCCEEEEecCCc
Confidence 66 333444446888888998764
No 187
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.98 E-value=1.9e-06 Score=81.83 Aligned_cols=26 Identities=42% Similarity=0.608 Sum_probs=24.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC
Q 046786 62 GELLAILGPSGCGKTTLLTALGGRLS 87 (604)
Q Consensus 62 Ge~~aIlGpsGaGKSTLL~~L~g~~~ 87 (604)
|++++|+||||||||||+++|+|+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 67899999999999999999999875
No 188
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.93 E-value=3.3e-05 Score=81.17 Aligned_cols=57 Identities=11% Similarity=0.108 Sum_probs=40.5
Q ss_pred cCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEec
Q 046786 178 LSGGERKRISIGQELLINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGG-RTILMTIH 235 (604)
Q Consensus 178 LSgGerqRvsia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g-~tvi~~~H 235 (604)
-++.++++..+++..+.+|+++++.-..+..|... ...++.++.+...| ++|++.+.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 56788899999999999999877774333445433 55677777776655 46666655
No 189
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.92 E-value=1.5e-06 Score=94.11 Aligned_cols=95 Identities=8% Similarity=0.144 Sum_probs=61.2
Q ss_pred hCCCeEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEE-EecCCeEEEecChhh--HHH-
Q 046786 194 INPSLLFLDEPTSGLDS-TMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNKILL-LSSDGSSLYFGKGED--VIN- 268 (604)
Q Consensus 194 ~~p~illLDEPtsgLD~-~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~v~l-l~~~G~~v~~G~~~~--~~~- 268 (604)
.+|++|++||+..-.+. .++..+...+..+.+.|+.||+++|.|..++..+.+++.- + ..|.++..++++. ..+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~-~~g~~i~l~~p~~e~r~~i 271 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRF-QMGLVAKLEPPDEETRKSI 271 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHH-HSSBCCBCCCCCHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhc-cCCeEEEeCCCCHHHHHHH
Confidence 48999999999887664 6788899999998888999999999865433222222222 2 4577777776542 222
Q ss_pred ---HHHhCCCCCCCCCChHHHHHHhh
Q 046786 269 ---YFAGIGYVPSVAMNPADFLLDLA 291 (604)
Q Consensus 269 ---~f~~~g~~~p~~~npadf~~~~~ 291 (604)
.....|...|+ ...+++.+..
T Consensus 272 L~~~~~~~~~~i~~--e~l~~la~~~ 295 (440)
T 2z4s_A 272 ARKMLEIEHGELPE--EVLNFVAENV 295 (440)
T ss_dssp HHHHHHHHTCCCCT--THHHHHHHHC
T ss_pred HHHHHHHcCCCCCH--HHHHHHHHhc
Confidence 23334554433 3466666554
No 190
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.90 E-value=1.2e-05 Score=82.51 Aligned_cols=63 Identities=13% Similarity=0.137 Sum_probs=43.5
Q ss_pred cCHHHHHHHHHHHHHh--hCCCeEEEeCCCCCCCHHH-HHHHHHHHHHHHhC-CC--EEEEEecCCchHHHhhcCeE
Q 046786 178 LSGGERKRISIGQELL--INPSLLFLDEPTSGLDSTM-AKKILVSLSKLAEG-GR--TILMTIHQPASSLFYMFNKI 248 (604)
Q Consensus 178 LSgGerqRvsia~~L~--~~p~illLDEPtsgLD~~~-~~~i~~~l~~la~~-g~--tvi~~~Hq~~~~i~~~~d~v 248 (604)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.++++++. |. .+.++.|+- ..+..++|.+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g-~~v~~l~~~i 169 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG-LNVDTIAAIV 169 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT-TTHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC-CCHHHHHHHH
Confidence 898886 5566666 68999998 7899876 66788888888764 43 555666663 2455555543
No 191
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.89 E-value=3.7e-06 Score=82.70 Aligned_cols=40 Identities=23% Similarity=0.199 Sum_probs=34.4
Q ss_pred EEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeC
Q 046786 57 GAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQF 105 (604)
Q Consensus 57 ~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~ 105 (604)
+..++|++++|.|+||||||||+++|+|. .|+|.+.+++.
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~---------~g~v~~~~~~~ 54 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY---------KNDICLLTEPV 54 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG---------TTTEEEECCTH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc---------cCCeEEEecCH
Confidence 34579999999999999999999999986 37788888764
No 192
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.87 E-value=1.2e-05 Score=82.98 Aligned_cols=132 Identities=11% Similarity=0.119 Sum_probs=84.5
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCH
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTV 128 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv 128 (604)
..-|+++.+-+++|+++.|.|++|+|||||+..++...- ..| ..+.|+.=+ ++.
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a------~~g--------------~~vl~~slE------~s~ 108 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS------DND--------------DVVNLHSLE------MGK 108 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH------TTT--------------CEEEEEESS------SCH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH------HcC--------------CeEEEEECC------CCH
Confidence 446788887899999999999999999999988875321 011 124454322 333
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 046786 129 AETLVFTALLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPTSGL 208 (604)
Q Consensus 129 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPtsgL 208 (604)
.+... ++......+.+.+..+ | . ..||.+|++|+..|...+.++++++.|+|...
T Consensus 109 ~~l~~------------------R~~~~~~~i~~~~l~~---~--~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~- 163 (315)
T 3bh0_A 109 KENIK------------------RLIVTAGSINAQKIKA---A--R-RDFASEDWGKLSMAIGEISNSNINIFDKAGQS- 163 (315)
T ss_dssp HHHHH------------------HHHHHHTTCCHHHHHS---C--H-HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-
T ss_pred HHHHH------------------HHHHHHcCCCHHHHhc---C--C-CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-
Confidence 33221 1111111122221111 1 0 13899999999999999999999999998643
Q ss_pred CHHHHHHHHHHHHHHHhC-CCE--EEEEec
Q 046786 209 DSTMAKKILVSLSKLAEG-GRT--ILMTIH 235 (604)
Q Consensus 209 D~~~~~~i~~~l~~la~~-g~t--vi~~~H 235 (604)
..++...++++.++ |.. +|++-|
T Consensus 164 ----~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 164 ----VNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp ----HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred ----HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 44577777777654 666 777755
No 193
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.87 E-value=4.2e-06 Score=81.03 Aligned_cols=28 Identities=36% Similarity=0.476 Sum_probs=26.4
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046786 60 SPGELLAILGPSGCGKTTLLTALGGRLS 87 (604)
Q Consensus 60 ~~Ge~~aIlGpsGaGKSTLL~~L~g~~~ 87 (604)
++|++++|+||||||||||++.|++.++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 6899999999999999999999999875
No 194
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.83 E-value=8.3e-05 Score=77.71 Aligned_cols=140 Identities=16% Similarity=0.165 Sum_probs=78.2
Q ss_pred EEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHH
Q 046786 57 GAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTVAETLVFTA 136 (604)
Q Consensus 57 ~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~ 136 (604)
+-+++|+++.|.||+|+|||||+..++..... .+..| | ....+.|+.-+..+ ...+-.....
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~---~~~~g-----g------~~~~vlyi~~E~~~----~~~~l~~~~~ 178 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQL---PGAGG-----Y------PGGKIIFIDTENTF----RPDRLRDIAD 178 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTS---CBTTT-----B------CCCEEEEEESSSCC----CHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhc---ccccC-----C------CCCeEEEEECCCCC----CHHHHHHHHH
Confidence 57899999999999999999999999874210 00001 0 01235565544322 2222222222
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHH-HHHHHHHHHHh----hCCCeEEEeCCCCCCCHH
Q 046786 137 LLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGE-RKRISIGQELL----INPSLLFLDEPTSGLDST 211 (604)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe-rqRvsia~~L~----~~p~illLDEPtsgLD~~ 211 (604)
++. ... +++++.+-+. +..++.+ .+.+..++.++ .+++++++|+.++-.+..
T Consensus 179 ~~g----~~~-------~~~l~~l~~~------------~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~ 235 (343)
T 1v5w_A 179 RFN----VDH-------DAVLDNVLYA------------RAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVD 235 (343)
T ss_dssp HTT----CCH-------HHHHHTEEEE------------ECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHH
T ss_pred HcC----CCH-------HHHHhceeEe------------ecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHH
Confidence 221 111 1233322111 1223332 24455566666 568999999999865432
Q ss_pred ------------HHHHHHHHHHHHHh-CCCEEEEEecCC
Q 046786 212 ------------MAKKILVSLSKLAE-GGRTILMTIHQP 237 (604)
Q Consensus 212 ------------~~~~i~~~l~~la~-~g~tvi~~~Hq~ 237 (604)
...++++.|+++++ .|.+||++.|-.
T Consensus 236 ~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 236 FSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp CCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred hcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence 13456666777775 488888888853
No 195
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.78 E-value=6.8e-05 Score=77.68 Aligned_cols=139 Identities=22% Similarity=0.307 Sum_probs=78.3
Q ss_pred EEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHH
Q 046786 57 GAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTVAETLVFTA 136 (604)
Q Consensus 57 ~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~ 136 (604)
+-+++|+++.|.||+|+|||||+..++...... ...| | ....+.|+.-+..+ ...+-.....
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~---~~~g-----g------~~~~vlyi~~e~~~----~~~~l~~~~~ 163 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLP---PEKG-----G------LSGKAVYIDTEGTF----RWERIENMAK 163 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSC---GGGT-----C------CSCEEEEEESSSCC----CHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcc---cccC-----C------CCCeEEEEECCCCC----CHHHHHHHHH
Confidence 578999999999999999999999988743200 0011 1 01235565444322 1222222222
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHH-HHHHHHHHHHHh---hCCCeEEEeCCCCCCCH--
Q 046786 137 LLRLPNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGG-ERKRISIGQELL---INPSLLFLDEPTSGLDS-- 210 (604)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG-erqRvsia~~L~---~~p~illLDEPtsgLD~-- 210 (604)
++. ... +++++.+-+ .+..++. +.+.+..++.++ .+|+++++|+.++-.+.
T Consensus 164 ~~g----~~~-------~~~~~~l~~------------~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~ 220 (324)
T 2z43_A 164 ALG----LDI-------DNVMNNIYY------------IRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEY 220 (324)
T ss_dssp HTT----CCH-------HHHHHTEEE------------EECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHS
T ss_pred HhC----CCH-------HHHhccEEE------------EeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhh
Confidence 221 111 112222111 1122333 335677777787 57999999999875432
Q ss_pred ------H----HHHHHHHHHHHHHh-CCCEEEEEecC
Q 046786 211 ------T----MAKKILVSLSKLAE-GGRTILMTIHQ 236 (604)
Q Consensus 211 ------~----~~~~i~~~l~~la~-~g~tvi~~~Hq 236 (604)
. ...++++.|+++++ .|.+||++.|-
T Consensus 221 ~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 221 PGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp CTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 1 12455666677665 48898888774
No 196
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.78 E-value=7.3e-06 Score=85.68 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=24.4
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 60 SPGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 60 ~~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
+++..+.|.||+|+|||||++.+++..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 457799999999999999999999865
No 197
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.77 E-value=6e-06 Score=77.12 Aligned_cols=37 Identities=19% Similarity=0.399 Sum_probs=31.2
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeC
Q 046786 60 SPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQF 105 (604)
Q Consensus 60 ~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~ 105 (604)
.+|++++|+||||||||||++.|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~---------g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL---------HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH---------TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh---------CcEEEeCccc
Confidence 468999999999999999999999863 6677776554
No 198
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.72 E-value=5.9e-06 Score=79.46 Aligned_cols=41 Identities=27% Similarity=0.176 Sum_probs=33.6
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEe
Q 046786 59 VSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQ 104 (604)
Q Consensus 59 i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~ 104 (604)
.++|++++|.|+||||||||++.|++.++ +..|.|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~-----~~~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLR-----EQGISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHH-----HTTCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHh-----hcCCeEEEeccC
Confidence 46899999999999999999999999874 236777766544
No 199
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.69 E-value=8.3e-05 Score=80.02 Aligned_cols=125 Identities=12% Similarity=0.114 Sum_probs=70.3
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcC
Q 046786 61 PGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTVAETLVFTALLRL 140 (604)
Q Consensus 61 ~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~f~~~~~~ 140 (604)
++.+++++||+|+||||++..|++.+. +..++|.+-+.+.. . ....|.+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~-----~~G~kVllv~~D~~-----------------r-~~a~eqL~------- 145 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK-----KRGYKVGLVAADVY-----------------R-PAAYDQLL------- 145 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH-----HTTCCEEEEEECCS-----------------C-HHHHHHHH-------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEEecCcc-----------------c-hhHHHHHH-------
Confidence 588999999999999999999998764 12445544333210 0 01122222
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEEeCCC-CC--CCHHHHHHHH
Q 046786 141 PNSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFLDEPT-SG--LDSTMAKKIL 217 (604)
Q Consensus 141 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illLDEPt-sg--LD~~~~~~i~ 217 (604)
..-+..|+.-... ..+..--+--+-+++.+...+++++++|+|- .+ .|+....++.
T Consensus 146 --------------~~~~~~gv~~~~~-------~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~ 204 (433)
T 3kl4_A 146 --------------QLGNQIGVQVYGE-------PNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMK 204 (433)
T ss_dssp --------------HHHHTTTCCEECC-------TTCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHH
T ss_pred --------------HHHHhcCCceeec-------cccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHH
Confidence 2222333321110 0011111222234454445689999999997 34 7887777777
Q ss_pred HHHHHHHhCCCEEEEEecC
Q 046786 218 VSLSKLAEGGRTILMTIHQ 236 (604)
Q Consensus 218 ~~l~~la~~g~tvi~~~Hq 236 (604)
+.++.+......+++..|.
T Consensus 205 ~i~~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 205 EMYDVLKPDDVILVIDASI 223 (433)
T ss_dssp HHHHHHCCSEEEEEEEGGG
T ss_pred HHHHhhCCcceEEEEeCcc
Confidence 7666554444555555553
No 200
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.69 E-value=2.2e-05 Score=75.48 Aligned_cols=29 Identities=34% Similarity=0.362 Sum_probs=26.7
Q ss_pred EEecCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 58 AVSPGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 58 ~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.+++|++++|+|+||||||||.+.|++.+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56789999999999999999999999975
No 201
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.68 E-value=4.3e-05 Score=78.21 Aligned_cols=28 Identities=36% Similarity=0.727 Sum_probs=25.4
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 59 VSPGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 59 i~~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
++++..+.|.||+|+|||||.++|++..
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 4678889999999999999999999865
No 202
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.67 E-value=2.8e-06 Score=88.09 Aligned_cols=41 Identities=22% Similarity=0.252 Sum_probs=34.2
Q ss_pred cccceeeceEEEEecCe------EEEEECCCCCcHHHHHHHHHcCCC
Q 046786 47 EEKMILKGVSGAVSPGE------LLAILGPSGCGKTTLLTALGGRLS 87 (604)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge------~~aIlGpsGaGKSTLL~~L~g~~~ 87 (604)
+.++.|++++..+.+++ ++||+||||||||||+++|++++.
T Consensus 71 ~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 71 TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34556777777777766 999999999999999999999864
No 203
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.65 E-value=4.8e-06 Score=92.53 Aligned_cols=43 Identities=35% Similarity=0.445 Sum_probs=35.9
Q ss_pred EEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCcccc-EEE-ECCEeC
Q 046786 58 AVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQG-HIT-YNGKQF 105 (604)
Q Consensus 58 ~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G-~I~-~~G~~~ 105 (604)
.+++|++++|+|+||||||||+++|+|++. +++| ++. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~-----~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLM-----EMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHH-----TTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhc-----ccCCceEEEECCcHH
Confidence 567999999999999999999999999875 3455 674 888654
No 204
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.63 E-value=3.7e-06 Score=81.84 Aligned_cols=57 Identities=23% Similarity=0.304 Sum_probs=43.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEE--------CCEeCCh-----hccccEEEEecCC
Q 046786 62 GELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITY--------NGKQFSA-----EVKRRTGFVAQNN 120 (604)
Q Consensus 62 Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~--------~G~~~~~-----~~~~~i~yv~Q~~ 120 (604)
+.+++|+|||||||||+.+.|++.+. -..+++|++.. +|.++.. .+++.+++++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g--~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQ--WHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHT--CEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC--CCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 56899999999999999999998652 11256788887 6776642 3556788888864
No 205
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.56 E-value=2.7e-05 Score=75.02 Aligned_cols=29 Identities=24% Similarity=0.415 Sum_probs=26.2
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046786 59 VSPGELLAILGPSGCGKTTLLTALGGRLS 87 (604)
Q Consensus 59 i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~ 87 (604)
..+|++++|+||||||||||++.|.+..+
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 35899999999999999999999998764
No 206
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.53 E-value=2.7e-05 Score=72.27 Aligned_cols=26 Identities=31% Similarity=0.534 Sum_probs=24.0
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 61 PGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 61 ~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.|++++|+||||||||||+++|++++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999976
No 207
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.53 E-value=0.00024 Score=70.47 Aligned_cols=34 Identities=32% Similarity=0.676 Sum_probs=24.2
Q ss_pred eeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 51 ILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 51 iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.++++++..++| +.|.||||+|||||+++|++..
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHc
Confidence 345555555555 8899999999999999999865
No 208
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.52 E-value=7.9e-06 Score=76.73 Aligned_cols=40 Identities=35% Similarity=0.424 Sum_probs=31.0
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCcccc--EEEECCEeC
Q 046786 60 SPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQG--HITYNGKQF 105 (604)
Q Consensus 60 ~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G--~I~~~G~~~ 105 (604)
++|++++|.|++||||||+.+.|++.+++ .| .+.++|..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~------~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC------HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH------TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh------CCCcEEEECChHH
Confidence 47999999999999999999999997631 34 566665443
No 209
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.50 E-value=6.8e-05 Score=87.18 Aligned_cols=30 Identities=30% Similarity=0.535 Sum_probs=27.8
Q ss_pred EEecCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046786 58 AVSPGELLAILGPSGCGKTTLLTALGGRLS 87 (604)
Q Consensus 58 ~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~ 87 (604)
.+++|+.++|.||||+|||||+++|++.+.
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 578999999999999999999999999864
No 210
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.49 E-value=0.00054 Score=74.05 Aligned_cols=169 Identities=18% Similarity=0.191 Sum_probs=95.0
Q ss_pred ceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeCChhccccEEEEecCCCCCCCCCHH
Q 046786 50 MILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQFSAEVKRRTGFVAQNNVFYPHLTVA 129 (604)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~ 129 (604)
.-|+.+.+-+++|+++.|.|++|+|||||...++..... ..| ..+.|+.=+ ++..
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~-----~~g--------------~~vl~~slE------~~~~ 242 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAAL-----KEG--------------VGVGIYSLE------MPAA 242 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHH-----TTC--------------CCEEEEESS------SCHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-----hCC--------------CeEEEEECC------CCHH
Confidence 456777777999999999999999999999888874320 011 112232211 1222
Q ss_pred HHHHH--HHHhcCC------CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHh--hCCCeE
Q 046786 130 ETLVF--TALLRLP------NSLKREEKVLHAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELL--INPSLL 199 (604)
Q Consensus 130 e~l~f--~~~~~~~------~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~--~~p~il 199 (604)
+...- +.....+ ...+.++. +++.+.++.+.-.+. .+- ...++|..+.+ +.++.+. .+|+++
T Consensus 243 ~l~~R~~~~~~~i~~~~l~~g~l~~~~~-~~~~~a~~~l~~~~l---~i~--d~~~~s~~~l~--~~~~~l~~~~~~~lI 314 (444)
T 2q6t_A 243 QLTLRMMCSEARIDMNRVRLGQLTDRDF-SRLVDVASRLSEAPI---YID--DTPDLTLMEVR--ARARRLVSQNQVGLI 314 (444)
T ss_dssp HHHHHHHHHHTTCCTTTCCGGGCCHHHH-HHHHHHHHHHHTSCE---EEE--CCTTCBHHHHH--HHHHHHHHHSCCCEE
T ss_pred HHHHHHHHHHcCCCHHHHhCCCCCHHHH-HHHHHHHHHHhcCCE---EEE--CCCCCCHHHHH--HHHHHHHHHcCCCEE
Confidence 21110 0011110 01233332 233344443322111 111 12367777653 4556665 489999
Q ss_pred EEeCCCCCCCH----------HHHHHHHHHHHHHHhC-CCEEEEEecC-----------Cc-------hHHHhhcCeEEE
Q 046786 200 FLDEPTSGLDS----------TMAKKILVSLSKLAEG-GRTILMTIHQ-----------PA-------SSLFYMFNKILL 250 (604)
Q Consensus 200 lLDEPtsgLD~----------~~~~~i~~~l~~la~~-g~tvi~~~Hq-----------~~-------~~i~~~~d~v~l 250 (604)
++|..+.-.+. ....++.+.|+.++++ |.+||+++|- |. ..+.+.+|.++.
T Consensus 315 vID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~ 394 (444)
T 2q6t_A 315 IIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMF 394 (444)
T ss_dssp EEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEE
T ss_pred EEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEE
Confidence 99998754322 1234677888888874 8999999882 21 035567888888
Q ss_pred E
Q 046786 251 L 251 (604)
Q Consensus 251 l 251 (604)
|
T Consensus 395 L 395 (444)
T 2q6t_A 395 I 395 (444)
T ss_dssp E
T ss_pred E
Confidence 8
No 211
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.49 E-value=5.3e-05 Score=69.49 Aligned_cols=31 Identities=29% Similarity=0.430 Sum_probs=25.3
Q ss_pred eceEEEEecCeEEEEECCCCCcHHHHHHHHHc
Q 046786 53 KGVSGAVSPGELLAILGPSGCGKTTLLTALGG 84 (604)
Q Consensus 53 ~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g 84 (604)
++.++.+.+| +++|+|||||||||+|++|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 3445566665 999999999999999999873
No 212
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.42 E-value=4.4e-05 Score=75.13 Aligned_cols=67 Identities=16% Similarity=0.131 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHHHHhhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCe
Q 046786 179 SGGERKRISIGQELLINPSLLFLDEPTS-GLDSTMAKKILVSLSKLAEGGRTILMTIHQPASSLFYMFNK 247 (604)
Q Consensus 179 SgGerqRvsia~~L~~~p~illLDEPts-gLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~~i~~~~d~ 247 (604)
+.|...+.. ...+.+-+++++||.-. ++|.......++.+.+...+-+++++|.--+...+.++|++
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTTS
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcCC
Confidence 456665553 33578999999999976 68777665555555444333346666655444455555543
No 213
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.34 E-value=1.6e-05 Score=83.02 Aligned_cols=52 Identities=21% Similarity=0.250 Sum_probs=42.5
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEe
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQ 104 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~ 104 (604)
.+.+++++++..++|.+++|+|++|+|||||++.|++.+. +..|++.+-+.+
T Consensus 42 ~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~-----~~~~~v~v~~~d 93 (341)
T 2p67_A 42 STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI-----REGLKVAVIAVD 93 (341)
T ss_dssp HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH-----HTTCCEEEEEEC
T ss_pred HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH-----hcCCeEEEEeec
Confidence 4568899999999999999999999999999999999764 235566555444
No 214
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.31 E-value=8.6e-05 Score=79.91 Aligned_cols=31 Identities=26% Similarity=0.529 Sum_probs=27.9
Q ss_pred EEEecCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046786 57 GAVSPGELLAILGPSGCGKTTLLTALGGRLS 87 (604)
Q Consensus 57 ~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~ 87 (604)
+.+.+|++++|+|||||||||||++|+++..
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 4467899999999999999999999999774
No 215
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.29 E-value=0.00018 Score=77.59 Aligned_cols=69 Identities=20% Similarity=0.411 Sum_probs=38.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC------CC-CCCccccEEEECCEeCC----hhccccEEEEecCCCCCCCCCHHHHH
Q 046786 64 LLAILGPSGCGKTTLLTALGGRLS------NG-KDTVTQGHITYNGKQFS----AEVKRRTGFVAQNNVFYPHLTVAETL 132 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~~------~~-~~~~~~G~I~~~G~~~~----~~~~~~i~yv~Q~~~l~~~lTv~e~l 132 (604)
.++|+|+||+|||||+|.|.|... ++ ...+.+|.+.++|+++. ...++..++.+|....+..++..+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i 261 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI 261 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 799999999999999999999753 11 11245799999998642 12333444444544444443444444
No 216
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.27 E-value=0.00046 Score=69.34 Aligned_cols=27 Identities=33% Similarity=0.553 Sum_probs=23.7
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 60 SPGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 60 ~~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.++.-+.|.||+|+|||||.++|+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 456678999999999999999999865
No 217
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.27 E-value=3.5e-05 Score=85.60 Aligned_cols=50 Identities=24% Similarity=0.482 Sum_probs=40.2
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEe
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQ 104 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~ 104 (604)
..+++++++.+ +|+.++|+||||+|||||+++|++.+. +..|.|.++|..
T Consensus 96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~-----~~~~~i~~~~~~ 145 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG-----RKFVRISLGGVR 145 (543)
T ss_dssp HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT-----CEEEEECCCC--
T ss_pred HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC-----CCeEEEEecccc
Confidence 34677888887 899999999999999999999999874 346888777643
No 218
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.27 E-value=0.00087 Score=68.87 Aligned_cols=46 Identities=13% Similarity=0.127 Sum_probs=35.2
Q ss_pred hhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 046786 193 LINPSLLFLDEPTS-GLDSTMAKKILVSLSKLAEGGRTILMTIHQPA 238 (604)
Q Consensus 193 ~~~p~illLDEPts-gLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~ 238 (604)
..+|++|++||+-. .-|...+..+...+..+.+.|+.+|++++.+.
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~ 142 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHP 142 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCCh
Confidence 35799999999865 23447788899999888877777777777543
No 219
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.25 E-value=0.00016 Score=70.17 Aligned_cols=44 Identities=14% Similarity=0.205 Sum_probs=30.9
Q ss_pred hCCCeEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCE-EEEEecCC
Q 046786 194 INPSLLFLDEPTSGL-DSTMAKKILVSLSKLAEGGRT-ILMTIHQP 237 (604)
Q Consensus 194 ~~p~illLDEPtsgL-D~~~~~~i~~~l~~la~~g~t-vi~~~Hq~ 237 (604)
.+|.++++||.-.-- +......+.+.+.+..+.++. +|++++.+
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASAS 148 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSC
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 568999999965432 233377788888888776655 77777754
No 220
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.24 E-value=0.0012 Score=64.62 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRLS 87 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~~ 87 (604)
-++|+|++|+|||||+|.|.|...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 479999999999999999999653
No 221
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.22 E-value=7.7e-05 Score=78.19 Aligned_cols=41 Identities=20% Similarity=0.302 Sum_probs=33.3
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeC
Q 046786 60 SPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQF 105 (604)
Q Consensus 60 ~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~ 105 (604)
+++.+++|+|++|||||||+|.|+|... +.+|+|.+.+.++
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~-----~~~~~v~V~~~dp 112 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT-----ERGHKLSVLAVDP 112 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEECCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhh-----hcCCeEEEEeecC
Confidence 4688999999999999999999999764 3467777766554
No 222
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.20 E-value=0.00045 Score=65.76 Aligned_cols=24 Identities=42% Similarity=0.553 Sum_probs=21.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 046786 63 ELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 63 e~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
..+.|.||+|+|||||+++|+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 678999999999999999999864
No 223
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.16 E-value=0.00017 Score=70.99 Aligned_cols=37 Identities=27% Similarity=0.338 Sum_probs=27.2
Q ss_pred eeeceEEEEe---cCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046786 51 ILKGVSGAVS---PGELLAILGPSGCGKTTLLTALGGRLS 87 (604)
Q Consensus 51 iL~~vs~~i~---~Ge~~aIlGpsGaGKSTLL~~L~g~~~ 87 (604)
=|.++|+.++ +|.+++|.||+||||||+++.|+..+.
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4777888777 999999999999999999999999774
No 224
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.15 E-value=0.00078 Score=66.02 Aligned_cols=52 Identities=27% Similarity=0.354 Sum_probs=43.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CCchHHHhhcCeEEEE
Q 046786 195 NPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIH---------QPASSLFYMFNKILLL 251 (604)
Q Consensus 195 ~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H---------q~~~~i~~~~d~v~ll 251 (604)
+|+++++||--. |+. ++++.++.+++.|.+||++-| .++..+..++|.+.-|
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el 149 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKL 149 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEEC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeec
Confidence 489999999954 553 466677777777999999999 6778899999999987
No 225
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.15 E-value=0.00044 Score=64.14 Aligned_cols=27 Identities=44% Similarity=0.642 Sum_probs=23.4
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 60 SPGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 60 ~~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999999999864
No 226
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.10 E-value=0.0086 Score=62.71 Aligned_cols=35 Identities=31% Similarity=0.447 Sum_probs=28.7
Q ss_pred eeeceE--EEEecCeEEEEECCCCCcHHHHHHHHHcC
Q 046786 51 ILKGVS--GAVSPGELLAILGPSGCGKTTLLTALGGR 85 (604)
Q Consensus 51 iL~~vs--~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~ 85 (604)
-|+.+- +=+++|+++.|.||+|+|||||...++..
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 355543 35899999999999999999999888764
No 227
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.10 E-value=0.00025 Score=68.31 Aligned_cols=31 Identities=29% Similarity=0.418 Sum_probs=25.3
Q ss_pred ceEEEEecCeEEEEECCCCCcHHHHHHHHHcC
Q 046786 54 GVSGAVSPGELLAILGPSGCGKTTLLTALGGR 85 (604)
Q Consensus 54 ~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~ 85 (604)
+.++.+.+| +++|.|||||||||++++|.-.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~~~ 46 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILVG 46 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 445566665 9999999999999999998643
No 228
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.03 E-value=0.0023 Score=67.02 Aligned_cols=27 Identities=26% Similarity=0.537 Sum_probs=23.6
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 60 SPGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 60 ~~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.+..-+.|.||+|+|||||.++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456679999999999999999999864
No 229
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.03 E-value=0.00045 Score=71.99 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=23.7
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 60 SPGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 60 ~~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456689999999999999999999765
No 230
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.03 E-value=0.00057 Score=64.43 Aligned_cols=52 Identities=25% Similarity=0.199 Sum_probs=27.7
Q ss_pred ceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC---CCCccccEEEECC
Q 046786 50 MILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNG---KDTVTQGHITYNG 102 (604)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~---~~~~~~G~I~~~G 102 (604)
.+++++|+..++. .++|+|++|+|||||++.+.+..... ...++.+.+.++|
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~ 66 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGN 66 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETT
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECC
Confidence 3789999998888 56899999999999999999843211 1122345666665
No 231
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.96 E-value=0.00029 Score=67.57 Aligned_cols=29 Identities=31% Similarity=0.464 Sum_probs=25.8
Q ss_pred EEecCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 58 AVSPGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 58 ~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
...+|.+++|+||||||||||.+.|+..+
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45689999999999999999999999865
No 232
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.96 E-value=0.002 Score=63.60 Aligned_cols=26 Identities=38% Similarity=0.606 Sum_probs=22.1
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 61 PGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 61 ~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
+..-+.|.||+|+|||||.++|+...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34457899999999999999999854
No 233
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.95 E-value=0.00022 Score=68.78 Aligned_cols=41 Identities=24% Similarity=0.303 Sum_probs=33.1
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCcccc--EEEECCEe
Q 046786 59 VSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQG--HITYNGKQ 104 (604)
Q Consensus 59 i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G--~I~~~G~~ 104 (604)
+++|.+++|.|++||||||+.+.|++.+. +..| .+.++|..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~-----~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLV-----RDRRVHAYRLDGDN 64 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHH-----HHHCCCEEEECHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhc-----cccCCcEEEECChH
Confidence 46789999999999999999999999763 2356 77776543
No 234
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.91 E-value=0.00038 Score=65.59 Aligned_cols=32 Identities=25% Similarity=0.307 Sum_probs=26.5
Q ss_pred ceEEEEecCeEEEEECCCCCcHHHHHHHHHcC
Q 046786 54 GVSGAVSPGELLAILGPSGCGKTTLLTALGGR 85 (604)
Q Consensus 54 ~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~ 85 (604)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57788889999999999999999999999976
No 235
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.86 E-value=0.00021 Score=68.00 Aligned_cols=36 Identities=33% Similarity=0.402 Sum_probs=31.3
Q ss_pred cceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcC
Q 046786 49 KMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGR 85 (604)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~ 85 (604)
+.+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 457888988888885 689999999999999999874
No 236
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.80 E-value=0.0018 Score=70.03 Aligned_cols=36 Identities=14% Similarity=0.121 Sum_probs=30.1
Q ss_pred ceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcC
Q 046786 50 MILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGR 85 (604)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~ 85 (604)
.-|+.+.+-+++|+++.|.|++|+|||||.--++..
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 346666667899999999999999999998777763
No 237
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.77 E-value=0.0056 Score=62.90 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=28.0
Q ss_pred eeceE-EEEecCeEEEEECCCCCcHHHHHHHHHc
Q 046786 52 LKGVS-GAVSPGELLAILGPSGCGKTTLLTALGG 84 (604)
Q Consensus 52 L~~vs-~~i~~Ge~~aIlGpsGaGKSTLL~~L~g 84 (604)
|+.+- +-+++|+++.|.||+|+|||||...++.
T Consensus 87 LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 87 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44443 5789999999999999999999988875
No 238
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.72 E-value=0.00032 Score=69.84 Aligned_cols=41 Identities=22% Similarity=0.317 Sum_probs=32.6
Q ss_pred EEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeC
Q 046786 58 AVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQF 105 (604)
Q Consensus 58 ~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~ 105 (604)
..+++.++.|+|+|||||||+.+.|+..+. .|.+.++|..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-------~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-------GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-------TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC-------CCcEEEecHHH
Confidence 346788999999999999999999998763 34567776543
No 239
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.72 E-value=0.00014 Score=76.49 Aligned_cols=34 Identities=32% Similarity=0.402 Sum_probs=29.4
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 47 EEKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.++.+++++++.| +|+|++|+|||||++.|.|..
T Consensus 28 ~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 28 HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp HTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred CCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 4466888998887 999999999999999998864
No 240
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.72 E-value=0.00062 Score=64.88 Aligned_cols=21 Identities=29% Similarity=0.612 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 046786 64 LLAILGPSGCGKTTLLTALGG 84 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g 84 (604)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
No 241
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.72 E-value=0.012 Score=60.60 Aligned_cols=27 Identities=30% Similarity=0.535 Sum_probs=23.6
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 60 SPGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 60 ~~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.+..-+.|.||+|+|||||.++++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455678999999999999999999865
No 242
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.64 E-value=0.00044 Score=74.26 Aligned_cols=46 Identities=17% Similarity=0.044 Sum_probs=39.0
Q ss_pred eceEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeC
Q 046786 53 KGVSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQF 105 (604)
Q Consensus 53 ~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~ 105 (604)
+++++. +|++++++|++||||||++..|++.+. +..|+|.+.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~-----~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK-----GKGRRPLLVAADT 136 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHH-----TTTCCEEEEECCS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEeeccc
Confidence 577877 899999999999999999999999875 2367888877665
No 243
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.58 E-value=0.0011 Score=69.95 Aligned_cols=31 Identities=26% Similarity=0.442 Sum_probs=27.3
Q ss_pred eeceEEEEecCeEEEEECCCCCcHHHHHHHHH
Q 046786 52 LKGVSGAVSPGELLAILGPSGCGKTTLLTALG 83 (604)
Q Consensus 52 L~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~ 83 (604)
+++..+.+.+| +++|.|||||||||+|.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 46777788775 99999999999999999986
No 244
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.57 E-value=0.00061 Score=71.83 Aligned_cols=33 Identities=24% Similarity=0.454 Sum_probs=31.5
Q ss_pred ceEEEEecCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 54 GVSGAVSPGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 54 ~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
|+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 899999999999999999999999999999864
No 245
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.57 E-value=0.00022 Score=74.50 Aligned_cols=37 Identities=19% Similarity=0.342 Sum_probs=32.7
Q ss_pred ceeeceEEEEecCeE--EEEECCCCCcHHHHHHHHHcCC
Q 046786 50 MILKGVSGAVSPGEL--LAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 50 ~iL~~vs~~i~~Ge~--~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.+++++++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 467778888888888 9999999999999999999865
No 246
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.56 E-value=0.0011 Score=62.12 Aligned_cols=28 Identities=36% Similarity=0.493 Sum_probs=25.6
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046786 60 SPGELLAILGPSGCGKTTLLTALGGRLS 87 (604)
Q Consensus 60 ~~Ge~~aIlGpsGaGKSTLL~~L~g~~~ 87 (604)
.+|.++.|.|++||||||+.+.|+..+.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999764
No 247
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.56 E-value=0.002 Score=59.86 Aligned_cols=22 Identities=36% Similarity=0.696 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 046786 64 LLAILGPSGCGKTTLLTALGGR 85 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~ 85 (604)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 248
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.53 E-value=0.0012 Score=60.40 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.++|+|++|+|||||++.|.|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 249
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.50 E-value=0.0013 Score=61.45 Aligned_cols=26 Identities=35% Similarity=0.599 Sum_probs=23.0
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcC
Q 046786 60 SPGELLAILGPSGCGKTTLLTALGGR 85 (604)
Q Consensus 60 ~~Ge~~aIlGpsGaGKSTLL~~L~g~ 85 (604)
.+|.+++|.|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999864
No 250
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.49 E-value=0.001 Score=63.29 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 62 GELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 62 Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
..+++|.|+|||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999864
No 251
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.41 E-value=0.0032 Score=58.86 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999998776643
No 252
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.40 E-value=0.025 Score=61.80 Aligned_cols=34 Identities=15% Similarity=0.131 Sum_probs=28.3
Q ss_pred eeeceEEEEecCeEEEEECCCCCcHHHHHHHHHc
Q 046786 51 ILKGVSGAVSPGELLAILGPSGCGKTTLLTALGG 84 (604)
Q Consensus 51 iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g 84 (604)
-|+.+.+-+.+|+++.|.|++|+|||||+--++-
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 4555555689999999999999999999877765
No 253
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.40 E-value=0.0016 Score=59.78 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998764
No 254
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.39 E-value=0.00038 Score=71.26 Aligned_cols=47 Identities=19% Similarity=0.138 Sum_probs=36.9
Q ss_pred ec-eEEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCEeC
Q 046786 53 KG-VSGAVSPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGKQF 105 (604)
Q Consensus 53 ~~-vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~~~ 105 (604)
++ +++..+ |++++++|++|+||||++..|++.+. +..|+|.+.+.+.
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~-----~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK-----KKGFKVGLVGADV 136 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH-----HTTCCEEEEECCC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH-----HCCCeEEEEecCC
Confidence 45 777766 99999999999999999999999764 2356677665543
No 255
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.37 E-value=0.0019 Score=59.88 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=23.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC
Q 046786 62 GELLAILGPSGCGKTTLLTALGGRLS 87 (604)
Q Consensus 62 Ge~~aIlGpsGaGKSTLL~~L~g~~~ 87 (604)
|.++.|.|+|||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998763
No 256
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.36 E-value=0.00035 Score=72.50 Aligned_cols=40 Identities=33% Similarity=0.562 Sum_probs=35.3
Q ss_pred ccceeeceEEEEecCeE--EEEECCCCCcHHHHHHHHHcCCC
Q 046786 48 EKMILKGVSGAVSPGEL--LAILGPSGCGKTTLLTALGGRLS 87 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~--~aIlGpsGaGKSTLL~~L~g~~~ 87 (604)
...+++.++..++.|++ +.+.||+|+||||+++++++.+.
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 45578888888999998 99999999999999999999763
No 257
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.35 E-value=0.0017 Score=61.09 Aligned_cols=39 Identities=38% Similarity=0.377 Sum_probs=28.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECCE
Q 046786 63 ELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNGK 103 (604)
Q Consensus 63 e~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G~ 103 (604)
.+++|.|+||||||||++.|.+.++... ..-|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g--~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARG--IRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTT--CCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccC--CceeEEeeCCC
Confidence 5789999999999999999998653211 11366666543
No 258
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.31 E-value=0.0014 Score=69.63 Aligned_cols=47 Identities=15% Similarity=0.247 Sum_probs=34.0
Q ss_pred EEEecCeEEEEECCCCCcHHHHHHHHHcCCC-----C-CCCCccccEEEECCE
Q 046786 57 GAVSPGELLAILGPSGCGKTTLLTALGGRLS-----N-GKDTVTQGHITYNGK 103 (604)
Q Consensus 57 ~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~-----~-~~~~~~~G~I~~~G~ 103 (604)
+.+..|..++|+|+||+|||||+|+|+|... + ....|..|.+.++|.
T Consensus 17 g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 17 GRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 3556788899999999999999999999621 1 113466788888764
No 259
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.29 E-value=0.0052 Score=63.31 Aligned_cols=28 Identities=32% Similarity=0.529 Sum_probs=25.6
Q ss_pred EEEecCeEEEEECCCCCcHHHHHHHHHc
Q 046786 57 GAVSPGELLAILGPSGCGKTTLLTALGG 84 (604)
Q Consensus 57 ~~i~~Ge~~aIlGpsGaGKSTLL~~L~g 84 (604)
+-+.+|.++.|.||+|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 6688999999999999999999999875
No 260
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.27 E-value=0.0019 Score=60.32 Aligned_cols=23 Identities=48% Similarity=0.589 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999999863
No 261
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.25 E-value=0.002 Score=63.04 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=24.6
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 59 VSPGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 59 i~~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-.+|.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4678899999999999999999999853
No 262
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.22 E-value=0.0024 Score=59.62 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=22.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 62 GELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 62 Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
|.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998754
No 263
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.19 E-value=0.0025 Score=64.70 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=28.7
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCCccccEEEECC
Q 046786 60 SPGELLAILGPSGCGKTTLLTALGGRLSNGKDTVTQGHITYNG 102 (604)
Q Consensus 60 ~~Ge~~aIlGpsGaGKSTLL~~L~g~~~~~~~~~~~G~I~~~G 102 (604)
..|.++.|.|||||||||+.+.|+...+ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~-------~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ-------GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT-------TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-------CCeEEEec
Confidence 3567999999999999999999987653 35566665
No 264
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.16 E-value=0.0025 Score=62.80 Aligned_cols=25 Identities=32% Similarity=0.585 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 62 GELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 62 Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.-+++|.|||||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999999654
No 265
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.13 E-value=0.057 Score=56.67 Aligned_cols=28 Identities=39% Similarity=0.640 Sum_probs=25.2
Q ss_pred EEEecCeEEEEECCCCCcHHHHHHHHHc
Q 046786 57 GAVSPGELLAILGPSGCGKTTLLTALGG 84 (604)
Q Consensus 57 ~~i~~Ge~~aIlGpsGaGKSTLL~~L~g 84 (604)
+-+++|+++.|.||+|+|||||...++.
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 3689999999999999999999987765
No 266
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.12 E-value=0.0024 Score=59.85 Aligned_cols=27 Identities=37% Similarity=0.469 Sum_probs=23.7
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 60 SPGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 60 ~~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
+++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998643
No 267
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.03 E-value=0.0034 Score=60.46 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.9
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHc
Q 046786 61 PGELLAILGPSGCGKTTLLTALGG 84 (604)
Q Consensus 61 ~Ge~~aIlGpsGaGKSTLL~~L~g 84 (604)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 268
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.03 E-value=0.0031 Score=62.74 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 046786 63 ELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 63 e~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.+++|+||||||||||-+.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999999864
No 269
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.02 E-value=0.0032 Score=57.45 Aligned_cols=19 Identities=32% Similarity=0.567 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 046786 64 LLAILGPSGCGKTTLLTAL 82 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L 82 (604)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 270
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.02 E-value=0.0056 Score=58.38 Aligned_cols=52 Identities=21% Similarity=0.343 Sum_probs=41.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CCchHHHhhcCeEEEE
Q 046786 195 NPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIH---------QPASSLFYMFNKILLL 251 (604)
Q Consensus 195 ~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H---------q~~~~i~~~~d~v~ll 251 (604)
+.+++++||--- +|+. .++.++++++.|+.||++-+ .++.++..++|.|.-|
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el 141 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKI 141 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEEC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEee
Confidence 479999999543 5533 36678888878999999999 6678899999999887
No 271
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.01 E-value=0.013 Score=61.29 Aligned_cols=27 Identities=30% Similarity=0.527 Sum_probs=23.0
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 60 SPGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 60 ~~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.+..-+.|.||+|+|||||.++++...
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 455568899999999999999999854
No 272
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.01 E-value=0.0031 Score=59.91 Aligned_cols=23 Identities=48% Similarity=0.670 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.+.|+||||||||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 36899999999999999997654
No 273
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.99 E-value=0.0037 Score=59.15 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=24.0
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 61 PGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 61 ~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999875
No 274
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.97 E-value=0.019 Score=58.80 Aligned_cols=27 Identities=30% Similarity=0.527 Sum_probs=23.1
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 60 SPGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 60 ~~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.+..-+.|.||+|+|||+|.++++...
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 355578999999999999999998754
No 275
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.95 E-value=0.029 Score=59.12 Aligned_cols=27 Identities=37% Similarity=0.621 Sum_probs=23.7
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 60 SPGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 60 ~~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.++.-+.|.||+|+|||+|.++|+...
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 356789999999999999999998864
No 276
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.94 E-value=0.0038 Score=58.19 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=22.4
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 61 PGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 61 ~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36689999999999999999998754
No 277
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.94 E-value=0.023 Score=70.21 Aligned_cols=29 Identities=31% Similarity=0.493 Sum_probs=26.6
Q ss_pred EEecCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 58 AVSPGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 58 ~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
=+++|+++.|.||+|+|||||+..++...
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 59999999999999999999999998753
No 278
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.92 E-value=0.0043 Score=58.86 Aligned_cols=27 Identities=33% Similarity=0.475 Sum_probs=24.0
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046786 61 PGELLAILGPSGCGKTTLLTALGGRLS 87 (604)
Q Consensus 61 ~Ge~~aIlGpsGaGKSTLL~~L~g~~~ 87 (604)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999998653
No 279
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.90 E-value=0.004 Score=58.75 Aligned_cols=23 Identities=35% Similarity=0.664 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999999865
No 280
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.89 E-value=0.0036 Score=58.27 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=22.3
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcC
Q 046786 61 PGELLAILGPSGCGKTTLLTALGGR 85 (604)
Q Consensus 61 ~Ge~~aIlGpsGaGKSTLL~~L~g~ 85 (604)
.+..+.|.|++||||||+.+.|+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999854
No 281
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.83 E-value=0.0077 Score=54.13 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++++|++|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37999999999999999999854
No 282
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.82 E-value=0.0064 Score=54.87 Aligned_cols=23 Identities=13% Similarity=0.419 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999999854
No 283
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.82 E-value=0.0078 Score=54.22 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998754
No 284
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.81 E-value=0.008 Score=53.97 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
No 285
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.80 E-value=0.005 Score=56.80 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 046786 63 ELLAILGPSGCGKTTLLTALGG 84 (604)
Q Consensus 63 e~~aIlGpsGaGKSTLL~~L~g 84 (604)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 286
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.79 E-value=0.017 Score=55.89 Aligned_cols=52 Identities=17% Similarity=0.252 Sum_probs=43.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CCchHHHhhcCeEEEE
Q 046786 195 NPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIH---------QPASSLFYMFNKILLL 251 (604)
Q Consensus 195 ~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H---------q~~~~i~~~~d~v~ll 251 (604)
+.+++++||--- +|.. .++.++++++.|+.||++-+ .++.++..++|.|.-|
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel 161 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKL 161 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEEC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEee
Confidence 579999999865 5533 34778888878999999999 7888999999999988
No 287
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.78 E-value=0.0071 Score=54.69 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37999999999999999999865
No 288
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.78 E-value=0.01 Score=64.86 Aligned_cols=28 Identities=32% Similarity=0.563 Sum_probs=23.8
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 59 VSPGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 59 i~~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
+.+..-+.|.||+|+|||+|.++|+...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 3555668999999999999999998764
No 289
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.76 E-value=0.0048 Score=58.75 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=24.1
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 60 SPGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 60 ~~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.+|.+++|.|++||||||+.+.|+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998754
No 290
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.73 E-value=0.0075 Score=54.43 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999999864
No 291
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.71 E-value=0.0025 Score=60.85 Aligned_cols=24 Identities=46% Similarity=0.728 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRLS 87 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~~ 87 (604)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998763
No 292
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.70 E-value=0.0051 Score=56.98 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.+.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999764
No 293
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.68 E-value=0.005 Score=57.77 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=23.5
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 60 SPGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 60 ~~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.++.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998643
No 294
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.67 E-value=0.04 Score=58.49 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=22.3
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 60 SPGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 60 ~~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
++..=+.+.||+|+|||+|.+++++..
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 333447889999999999999999864
No 295
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.66 E-value=0.0055 Score=57.78 Aligned_cols=24 Identities=29% Similarity=0.428 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 046786 62 GELLAILGPSGCGKTTLLTALGGR 85 (604)
Q Consensus 62 Ge~~aIlGpsGaGKSTLL~~L~g~ 85 (604)
..+++|.|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999874
No 296
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.64 E-value=0.0056 Score=57.20 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=22.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 046786 63 ELLAILGPSGCGKTTLLTALGGRLS 87 (604)
Q Consensus 63 e~~aIlGpsGaGKSTLL~~L~g~~~ 87 (604)
.+++|.|++|||||||++.|...++
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 3789999999999999999998653
No 297
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.62 E-value=0.012 Score=53.26 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKGT 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999999853
No 298
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.61 E-value=0.0048 Score=61.76 Aligned_cols=23 Identities=39% Similarity=0.603 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999974
No 299
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.61 E-value=0.0056 Score=58.32 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=24.3
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 60 SPGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 60 ~~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
++|.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 568899999999999999999998754
No 300
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.60 E-value=0.033 Score=54.59 Aligned_cols=53 Identities=17% Similarity=0.230 Sum_probs=44.9
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC---------CchHHHhhcCeEEEE
Q 046786 193 LINPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQ---------PASSLFYMFNKILLL 251 (604)
Q Consensus 193 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq---------~~~~i~~~~d~v~ll 251 (604)
+.+.+++++||----.| +.+.++.+++.|+.||++-++ +..++..++|.|.-|
T Consensus 88 ~~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtel 149 (234)
T 2orv_A 88 ALGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKL 149 (234)
T ss_dssp HTTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEEC
T ss_pred hccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEee
Confidence 36789999999876543 666666677789999999999 889999999999988
No 301
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.59 E-value=0.011 Score=54.61 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37999999999999999999864
No 302
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.59 E-value=0.007 Score=56.50 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 046786 62 GELLAILGPSGCGKTTLLTALGGR 85 (604)
Q Consensus 62 Ge~~aIlGpsGaGKSTLL~~L~g~ 85 (604)
+.+++|.|++||||||+.+.|+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999864
No 303
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.58 E-value=0.0057 Score=57.01 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
++.|.|++||||||+.+.|+..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998765
No 304
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.58 E-value=0.0081 Score=53.77 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37999999999999999998864
No 305
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.57 E-value=0.0079 Score=55.03 Aligned_cols=23 Identities=39% Similarity=0.523 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999998854
No 306
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.57 E-value=0.0089 Score=54.12 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999754
No 307
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.56 E-value=0.0083 Score=54.80 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999999754
No 308
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.54 E-value=0.012 Score=56.04 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999988753
No 309
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.53 E-value=0.022 Score=51.15 Aligned_cols=42 Identities=7% Similarity=0.158 Sum_probs=30.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 046786 195 NPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQP 237 (604)
Q Consensus 195 ~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~ 237 (604)
+..++++||.- .|+...+..+.+.+.+..+.+..+|++++.+
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 35789999975 6788888888888877644456677777654
No 310
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.50 E-value=0.0087 Score=54.69 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999999864
No 311
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.48 E-value=0.0092 Score=54.51 Aligned_cols=23 Identities=39% Similarity=0.619 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.|.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999864
No 312
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.47 E-value=0.013 Score=55.22 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999854
No 313
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.45 E-value=0.0066 Score=56.61 Aligned_cols=23 Identities=43% Similarity=0.582 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.++|+|++|+|||||++.|.+..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999864
No 314
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.45 E-value=0.053 Score=58.22 Aligned_cols=28 Identities=32% Similarity=0.617 Sum_probs=23.7
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 59 VSPGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 59 i~~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
+++-.=+.+.||+|+|||+|.++|++..
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4455668889999999999999999864
No 315
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.44 E-value=0.027 Score=55.08 Aligned_cols=45 Identities=22% Similarity=0.312 Sum_probs=29.6
Q ss_pred HHhhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q 046786 191 ELLINPSLLFLDEPTS-GLDSTMAKKILVSLSKLAEGGRTILMTIH 235 (604)
Q Consensus 191 ~L~~~p~illLDEPts-gLD~~~~~~i~~~l~~la~~g~tvi~~~H 235 (604)
+|..+|+++++||+-. ..+........+.+..+-+.|..++.|+|
T Consensus 80 ~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 80 LLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred HHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 3557899999999864 23333333344444445567889999998
No 316
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.43 E-value=0.012 Score=60.53 Aligned_cols=37 Identities=35% Similarity=0.317 Sum_probs=32.4
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGR 85 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~ 85 (604)
....+|+....+ .|.-++|.|+||+|||||...|.++
T Consensus 131 ~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 131 RTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred cceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 346788988777 8899999999999999999999875
No 317
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.42 E-value=0.016 Score=53.58 Aligned_cols=24 Identities=38% Similarity=0.511 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 046786 63 ELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 63 e~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
=-++|+|++|+|||||++.+.+..
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999999865
No 318
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.41 E-value=0.0077 Score=54.82 Aligned_cols=23 Identities=35% Similarity=0.674 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 37999999999999999999864
No 319
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.40 E-value=0.0061 Score=57.31 Aligned_cols=27 Identities=26% Similarity=0.382 Sum_probs=23.6
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 60 SPGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 60 ~~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
+++.+++|.|++||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998754
No 320
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.38 E-value=0.0086 Score=57.67 Aligned_cols=27 Identities=33% Similarity=0.550 Sum_probs=23.1
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 60 SPGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 60 ~~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
++|-.+.|+|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998754
No 321
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.37 E-value=0.013 Score=54.91 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37999999999999999998754
No 322
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.37 E-value=0.011 Score=55.01 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.|.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999999864
No 323
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.36 E-value=0.013 Score=61.52 Aligned_cols=40 Identities=23% Similarity=0.172 Sum_probs=30.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC-----C-CCCCccccEEEECC
Q 046786 63 ELLAILGPSGCGKTTLLTALGGRLS-----N-GKDTVTQGHITYNG 102 (604)
Q Consensus 63 e~~aIlGpsGaGKSTLL~~L~g~~~-----~-~~~~~~~G~I~~~G 102 (604)
-.++|+|.+|+|||||+|.|+|... + ....|+.|.+.+++
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 4589999999999999999999431 0 12346678888776
No 324
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.35 E-value=0.014 Score=53.54 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.|.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 47999999999999999999754
No 325
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.33 E-value=0.0065 Score=54.91 Aligned_cols=22 Identities=36% Similarity=0.688 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 046786 65 LAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 65 ~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
++|+|++|+|||||++.+.|..
T Consensus 5 i~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEECCCCCCHHHHHHHHcCcc
Confidence 6899999999999999998854
No 326
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.33 E-value=0.055 Score=58.32 Aligned_cols=28 Identities=32% Similarity=0.573 Sum_probs=23.7
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 59 VSPGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 59 i~~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
+++-.=+.+.||+|+|||+|.++||+..
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 3455567899999999999999999864
No 327
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.32 E-value=0.018 Score=52.88 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998643
No 328
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.31 E-value=0.008 Score=53.89 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999864
No 329
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.30 E-value=0.013 Score=52.77 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999999753
No 330
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.30 E-value=0.0089 Score=56.03 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998765
No 331
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.29 E-value=0.012 Score=54.38 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999854
No 332
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.29 E-value=0.0088 Score=54.16 Aligned_cols=22 Identities=41% Similarity=0.729 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 046786 65 LAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 65 ~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
++|+|++|+|||||++.+.+..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 6899999999999999998754
No 333
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.28 E-value=0.0091 Score=53.96 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 046786 65 LAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 65 ~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
++|+|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 7899999999999999999854
No 334
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.27 E-value=0.016 Score=53.41 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 46899999999999999999764
No 335
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.23 E-value=0.009 Score=56.54 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 78999999999999999999854
No 336
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.18 E-value=0.0092 Score=57.81 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=22.5
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 60 SPGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 60 ~~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.++.++.|.|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345789999999999999999998654
No 337
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.18 E-value=0.013 Score=53.30 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999999864
No 338
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.18 E-value=0.007 Score=63.95 Aligned_cols=45 Identities=9% Similarity=0.113 Sum_probs=37.4
Q ss_pred CCCeEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q 046786 195 NPSLLFLDEPTSGLD---STMAKKILVSLSKLAEGGRTILMTIHQPAS 239 (604)
Q Consensus 195 ~p~illLDEPtsgLD---~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~ 239 (604)
.|.++++||-=.=++ +..+..+.+.+++.++.|..++++||.|+.
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d 309 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVID 309 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHH
Confidence 478999999877774 667778888888888889999999999864
No 339
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.18 E-value=0.0073 Score=56.01 Aligned_cols=26 Identities=38% Similarity=0.517 Sum_probs=18.7
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 61 PGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 61 ~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998754
No 340
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.15 E-value=0.019 Score=53.56 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999854
No 341
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.13 E-value=0.014 Score=54.38 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.|.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999854
No 342
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.13 E-value=0.0098 Score=59.82 Aligned_cols=23 Identities=30% Similarity=0.574 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.++|+|++|+|||||+|.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 343
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.13 E-value=0.016 Score=53.25 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999999543
No 344
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.12 E-value=0.018 Score=53.43 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++++|++|+|||||++.|.+..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999864
No 345
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.11 E-value=0.012 Score=55.77 Aligned_cols=26 Identities=35% Similarity=0.543 Sum_probs=22.4
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 61 PGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 61 ~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.+.+++|.|++||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999998753
No 346
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.10 E-value=0.013 Score=53.40 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 347
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.10 E-value=0.016 Score=53.66 Aligned_cols=23 Identities=35% Similarity=0.647 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999999854
No 348
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.08 E-value=0.015 Score=54.41 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999864
No 349
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.08 E-value=0.0085 Score=55.66 Aligned_cols=22 Identities=41% Similarity=0.605 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 046786 64 LLAILGPSGCGKTTLLTALGGR 85 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~ 85 (604)
-++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 350
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.07 E-value=0.009 Score=55.68 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.|.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999863
No 351
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.07 E-value=0.013 Score=53.51 Aligned_cols=25 Identities=36% Similarity=0.474 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 62 GELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 62 Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.-.++|+|++|+|||||++.+.+..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3468999999999999999998853
No 352
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.06 E-value=0.019 Score=53.85 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999999754
No 353
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.06 E-value=0.011 Score=56.44 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.++|.||+||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997643
No 354
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.05 E-value=0.011 Score=58.45 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||+|.|.|..
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47999999999999999999965
No 355
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.03 E-value=0.017 Score=52.93 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999864
No 356
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.03 E-value=0.012 Score=54.87 Aligned_cols=23 Identities=43% Similarity=0.460 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
No 357
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.01 E-value=0.017 Score=54.27 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999864
No 358
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.01 E-value=0.018 Score=54.27 Aligned_cols=24 Identities=29% Similarity=0.231 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRLS 87 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~~ 87 (604)
-++|+|++|+|||||++.+.+...
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~~ 49 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGEF 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCCC
Confidence 579999999999999999998653
No 359
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.00 E-value=0.014 Score=53.76 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
No 360
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.00 E-value=0.0097 Score=55.18 Aligned_cols=23 Identities=43% Similarity=0.551 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.++|+|++|+|||||++.|.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999999864
No 361
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.00 E-value=0.02 Score=53.43 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999864
No 362
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.00 E-value=0.013 Score=55.49 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=21.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 62 GELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 62 Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
..+++|.|++||||||+.+.|+..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999998654
No 363
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.99 E-value=0.012 Score=53.68 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 37999999999999999999753
No 364
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.96 E-value=0.027 Score=53.15 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 57999999999999999999754
No 365
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.96 E-value=0.018 Score=53.50 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.|.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37999999999999999999854
No 366
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.95 E-value=0.012 Score=53.39 Aligned_cols=23 Identities=43% Similarity=0.498 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
No 367
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.94 E-value=0.011 Score=54.12 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998754
No 368
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.93 E-value=0.01 Score=54.80 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 046786 65 LAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 65 ~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999999854
No 369
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.93 E-value=0.014 Score=57.94 Aligned_cols=27 Identities=30% Similarity=0.378 Sum_probs=23.1
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 60 SPGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 60 ~~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.++.++.|.|++||||||+.+.|+..+
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999998753
No 370
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.91 E-value=0.01 Score=57.17 Aligned_cols=26 Identities=19% Similarity=0.179 Sum_probs=22.4
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 61 PGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 61 ~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.+..+.|+||+||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998754
No 371
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.91 E-value=0.021 Score=53.26 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.|.+..
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCcHHHHHHHHHcCC
Confidence 48999999999999999999853
No 372
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.90 E-value=0.013 Score=56.01 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.++|.||+||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998654
No 373
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.90 E-value=0.018 Score=53.49 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999999864
No 374
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.90 E-value=0.014 Score=53.41 Aligned_cols=24 Identities=38% Similarity=0.595 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 046786 63 ELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 63 e~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
+.++|.|++||||||+-+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998754
No 375
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.89 E-value=0.012 Score=52.88 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 046786 65 LAILGPSGCGKTTLLTALGGR 85 (604)
Q Consensus 65 ~aIlGpsGaGKSTLL~~L~g~ 85 (604)
++|+|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999874
No 376
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.86 E-value=0.3 Score=60.58 Aligned_cols=35 Identities=31% Similarity=0.447 Sum_probs=28.7
Q ss_pred eeeceE--EEEecCeEEEEECCCCCcHHHHHHHHHcC
Q 046786 51 ILKGVS--GAVSPGELLAILGPSGCGKTTLLTALGGR 85 (604)
Q Consensus 51 iL~~vs--~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~ 85 (604)
-|+.+- +=+++|+++.|.||+|+|||||.-.++..
T Consensus 370 ~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~ 406 (1706)
T 3cmw_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 406 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 456654 36899999999999999999998777653
No 377
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.86 E-value=0.015 Score=53.10 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998753
No 378
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.85 E-value=0.021 Score=53.66 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999999864
No 379
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.83 E-value=0.015 Score=53.26 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 380
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.83 E-value=0.014 Score=54.23 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=21.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 62 GELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 62 Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
+.+++|.|++||||||+.+.|+..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998643
No 381
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.83 E-value=0.024 Score=52.78 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 47999999999999999998754
No 382
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.82 E-value=0.016 Score=57.10 Aligned_cols=25 Identities=32% Similarity=0.407 Sum_probs=21.8
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcC
Q 046786 61 PGELLAILGPSGCGKTTLLTALGGR 85 (604)
Q Consensus 61 ~Ge~~aIlGpsGaGKSTLL~~L~g~ 85 (604)
++-.++|.||+||||||+.+.|+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4457899999999999999999864
No 383
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.81 E-value=0.021 Score=52.91 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.|.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999999864
No 384
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.81 E-value=0.024 Score=54.32 Aligned_cols=38 Identities=32% Similarity=0.268 Sum_probs=30.2
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 48 EKMILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
....++..-.. ..|..++|+||+|+|||||...|+.+.
T Consensus 21 ~~~~lHa~~v~-~~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 21 ERRSMHGVLVD-IYGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CCCCEESEEEE-ETTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred cceeeeEEEEE-ECCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 34466766555 468899999999999999999998764
No 385
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.79 E-value=0.025 Score=52.88 Aligned_cols=23 Identities=35% Similarity=0.548 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999999854
No 386
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.79 E-value=0.013 Score=53.55 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998854
No 387
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.79 E-value=0.071 Score=66.89 Aligned_cols=35 Identities=31% Similarity=0.447 Sum_probs=28.7
Q ss_pred eeeceE--EEEecCeEEEEECCCCCcHHHHHHHHHcC
Q 046786 51 ILKGVS--GAVSPGELLAILGPSGCGKTTLLTALGGR 85 (604)
Q Consensus 51 iL~~vs--~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~ 85 (604)
-|+.+- +=+++|+++.|.||+|+|||||...++..
T Consensus 370 ~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~ 406 (2050)
T 3cmu_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 406 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 355554 35999999999999999999998887763
No 388
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.77 E-value=0.012 Score=54.68 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 046786 63 ELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 63 e~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.+++|.|++||||||+-+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998754
No 389
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.77 E-value=0.015 Score=53.90 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRLS 87 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~~ 87 (604)
-++|+|++|+|||||++.+.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 468999999999999999999754
No 390
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.76 E-value=0.021 Score=53.20 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999999754
No 391
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.75 E-value=0.023 Score=58.92 Aligned_cols=26 Identities=31% Similarity=0.612 Sum_probs=23.8
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 61 PGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 61 ~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
++.++.|+||+|||||||-..|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 56689999999999999999999876
No 392
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.74 E-value=0.0086 Score=55.12 Aligned_cols=21 Identities=48% Similarity=0.586 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 046786 64 LLAILGPSGCGKTTLLTALGG 84 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g 84 (604)
-++|+|++|+|||||++.+.+
T Consensus 20 ~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 20 RILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999875
No 393
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.72 E-value=0.015 Score=59.27 Aligned_cols=26 Identities=42% Similarity=0.616 Sum_probs=22.5
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 60 SPGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 60 ~~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
+.| .++|+|++|+|||||+|.|.|..
T Consensus 6 ~~g-~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 6 YSG-FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEE-EEEEECSTTSSHHHHHHHHHTSC
T ss_pred cCC-EEEEECCCCCCHHHHHHHHhCCc
Confidence 344 58999999999999999999864
No 394
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.69 E-value=0.022 Score=52.95 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998743
No 395
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.63 E-value=0.015 Score=55.42 Aligned_cols=23 Identities=43% Similarity=0.582 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999864
No 396
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.61 E-value=0.017 Score=59.06 Aligned_cols=23 Identities=43% Similarity=0.619 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.++|+|++|+|||||+|.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999964
No 397
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.60 E-value=0.013 Score=58.67 Aligned_cols=22 Identities=41% Similarity=0.516 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 046786 65 LAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 65 ~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
++|+|++|+|||||+|.|.+..
T Consensus 11 I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 11 LMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999998753
No 398
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.59 E-value=0.015 Score=57.93 Aligned_cols=23 Identities=39% Similarity=0.619 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.++|+|++|+|||||+|.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999963
No 399
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.56 E-value=0.026 Score=53.68 Aligned_cols=23 Identities=35% Similarity=0.647 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999864
No 400
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.54 E-value=0.022 Score=53.05 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999864
No 401
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.53 E-value=0.021 Score=52.41 Aligned_cols=27 Identities=26% Similarity=0.521 Sum_probs=23.2
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 60 SPGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 60 ~~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
..+..+.|.||+|+|||||++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998865
No 402
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.51 E-value=0.014 Score=55.12 Aligned_cols=22 Identities=41% Similarity=0.721 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 046786 64 LLAILGPSGCGKTTLLTALGGR 85 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~ 85 (604)
-++|+|++|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5799999999999999999764
No 403
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.51 E-value=0.019 Score=56.72 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 046786 63 ELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 63 e~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999998854
No 404
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.48 E-value=0.016 Score=57.16 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 405
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.46 E-value=0.021 Score=53.62 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 57999999999999999999854
No 406
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.44 E-value=0.02 Score=54.40 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 046786 62 GELLAILGPSGCGKTTLLTALGGR 85 (604)
Q Consensus 62 Ge~~aIlGpsGaGKSTLL~~L~g~ 85 (604)
.-+++|.|++||||||+.+.|+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999999999864
No 407
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.40 E-value=0.017 Score=60.74 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 046786 65 LAILGPSGCGKTTLLTALGGR 85 (604)
Q Consensus 65 ~aIlGpsGaGKSTLL~~L~g~ 85 (604)
++|+|++|+|||||+|.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999985
No 408
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.40 E-value=0.017 Score=56.51 Aligned_cols=29 Identities=34% Similarity=0.542 Sum_probs=22.2
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046786 59 VSPGELLAILGPSGCGKTTLLTALGGRLS 87 (604)
Q Consensus 59 i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~ 87 (604)
..+|.++.|.|++||||||+.+.|+..+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999999988653
No 409
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.39 E-value=0.35 Score=51.86 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=24.1
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046786 61 PGELLAILGPSGCGKTTLLTALGGRLS 87 (604)
Q Consensus 61 ~Ge~~aIlGpsGaGKSTLL~~L~g~~~ 87 (604)
++.+++++|++|+||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999997653
No 410
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.37 E-value=0.038 Score=53.02 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.|.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999854
No 411
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.37 E-value=0.02 Score=56.98 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.++|+|++|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999854
No 412
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.37 E-value=0.021 Score=57.64 Aligned_cols=26 Identities=38% Similarity=0.544 Sum_probs=23.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC
Q 046786 62 GELLAILGPSGCGKTTLLTALGGRLS 87 (604)
Q Consensus 62 Ge~~aIlGpsGaGKSTLL~~L~g~~~ 87 (604)
...+.|.||+|+|||||.++|++...
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHc
Confidence 46899999999999999999999763
No 413
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.36 E-value=0.13 Score=52.22 Aligned_cols=42 Identities=10% Similarity=0.181 Sum_probs=28.9
Q ss_pred CCCeEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 046786 195 NPSLLFLDEPTSGLD-STMAKKILVSLSKLAEGGRTILMTIHQPA 238 (604)
Q Consensus 195 ~p~illLDEPtsgLD-~~~~~~i~~~l~~la~~g~tvi~~~Hq~~ 238 (604)
+++++++||.- .|. ......+.+.+.+.. .+..+|++++++.
T Consensus 105 ~~~vliiDEi~-~l~~~~~~~~L~~~le~~~-~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFD-RSGLAESQRHLRSFMEAYS-SNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCC-CGGGHHHHHHHHHHHHHHG-GGCEEEEEESSGG
T ss_pred CCeEEEEECCc-ccCcHHHHHHHHHHHHhCC-CCcEEEEEeCCcc
Confidence 78999999984 344 555666666666554 3567788888754
No 414
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.36 E-value=0.018 Score=53.82 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.|.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999998754
No 415
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.36 E-value=0.023 Score=55.22 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=23.3
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 60 SPGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 60 ~~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
++..++.|+||+||||+|.-+.|+-.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 455688999999999999999998754
No 416
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.34 E-value=0.022 Score=55.11 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998643
No 417
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.32 E-value=0.023 Score=53.86 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999854
No 418
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.31 E-value=0.02 Score=55.06 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=22.4
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 61 PGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 61 ~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
+|-.+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35578999999999999999998754
No 419
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.30 E-value=0.019 Score=54.85 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.++|+|++|+|||||++.|++..
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998753
No 420
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.29 E-value=0.011 Score=56.45 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999864
No 421
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.28 E-value=0.02 Score=53.77 Aligned_cols=22 Identities=32% Similarity=0.631 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 046786 64 LLAILGPSGCGKTTLLTALGGR 85 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~ 85 (604)
-++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999973
No 422
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.28 E-value=0.019 Score=58.30 Aligned_cols=23 Identities=26% Similarity=0.564 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.++|+|++|+|||||++.|.|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 423
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.26 E-value=0.019 Score=57.56 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.++|+|++|||||||+|.|.|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999864
No 424
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.25 E-value=0.027 Score=53.08 Aligned_cols=23 Identities=39% Similarity=0.650 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37999999999999999999854
No 425
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.25 E-value=0.027 Score=54.52 Aligned_cols=28 Identities=36% Similarity=0.560 Sum_probs=24.5
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046786 60 SPGELLAILGPSGCGKTTLLTALGGRLS 87 (604)
Q Consensus 60 ~~Ge~~aIlGpsGaGKSTLL~~L~g~~~ 87 (604)
-+|.++.|.|++||||||+.+.|+..+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999988654
No 426
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.23 E-value=0.029 Score=53.51 Aligned_cols=23 Identities=35% Similarity=0.732 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~~ 58 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADGA 58 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999753
No 427
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.22 E-value=0.021 Score=52.99 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 046786 64 LLAILGPSGCGKTTLLTALGGR 85 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~ 85 (604)
-++|+|++|+|||||++.+.+.
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999964
No 428
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.22 E-value=0.027 Score=52.46 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999753
No 429
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.22 E-value=0.019 Score=53.53 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47999999999999999999854
No 430
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.21 E-value=0.021 Score=53.89 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998753
No 431
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.19 E-value=0.022 Score=55.03 Aligned_cols=22 Identities=14% Similarity=0.410 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 046786 64 LLAILGPSGCGKTTLLTALGGR 85 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~ 85 (604)
.++|+|++|+|||||++.|.+.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
No 432
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.17 E-value=0.016 Score=53.86 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998864
No 433
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.17 E-value=0.035 Score=52.48 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 57999999999999999998643
No 434
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.16 E-value=0.025 Score=53.84 Aligned_cols=23 Identities=43% Similarity=0.495 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.|.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999854
No 435
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.15 E-value=0.022 Score=57.42 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=20.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 046786 62 GELLAILGPSGCGKTTLLTALGG 84 (604)
Q Consensus 62 Ge~~aIlGpsGaGKSTLL~~L~g 84 (604)
..+++|.|++||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999983
No 436
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.13 E-value=0.013 Score=59.48 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=19.5
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 61 PGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 61 ~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
++-+++|-||+||||||+.+.|+..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998753
No 437
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.10 E-value=0.02 Score=52.93 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999753
No 438
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.05 E-value=0.019 Score=52.49 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37999999999999999998753
No 439
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.04 E-value=0.028 Score=56.69 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 046786 63 ELLAILGPSGCGKTTLLTALGGR 85 (604)
Q Consensus 63 e~~aIlGpsGaGKSTLL~~L~g~ 85 (604)
.++.|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999874
No 440
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.02 E-value=0.04 Score=56.54 Aligned_cols=25 Identities=44% Similarity=0.680 Sum_probs=22.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 62 GELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 62 Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
+.+++|+||+|||||||.+.|+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4588999999999999999999875
No 441
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.01 E-value=0.068 Score=62.38 Aligned_cols=25 Identities=40% Similarity=0.626 Sum_probs=22.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 046786 63 ELLAILGPSGCGKTTLLTALGGRLS 87 (604)
Q Consensus 63 e~~aIlGpsGaGKSTLL~~L~g~~~ 87 (604)
.-+.|.||+|+|||+|.+.|+....
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5789999999999999999998653
No 442
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.00 E-value=0.03 Score=54.44 Aligned_cols=26 Identities=35% Similarity=0.553 Sum_probs=22.5
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 61 PGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 61 ~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.+..+.|+|++||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44578999999999999999998754
No 443
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.00 E-value=0.025 Score=54.15 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36899999999999999998643
No 444
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.91 E-value=0.026 Score=51.72 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=22.5
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 61 PGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 61 ~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35567899999999999999998865
No 445
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.89 E-value=0.023 Score=57.07 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.++|+|++|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 446
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=93.89 E-value=0.042 Score=52.51 Aligned_cols=23 Identities=35% Similarity=0.629 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 447
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.88 E-value=0.027 Score=53.43 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999998754
No 448
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.86 E-value=0.018 Score=52.93 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=9.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 046786 64 LLAILGPSGCGKTTLLTALGGR 85 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~ 85 (604)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999864
No 449
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=93.83 E-value=0.021 Score=54.41 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.|.+..
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998643
No 450
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.81 E-value=0.03 Score=55.09 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=24.4
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046786 61 PGELLAILGPSGCGKTTLLTALGGRLS 87 (604)
Q Consensus 61 ~Ge~~aIlGpsGaGKSTLL~~L~g~~~ 87 (604)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999988653
No 451
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=93.81 E-value=0.037 Score=52.36 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 452
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.76 E-value=0.025 Score=52.99 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 046786 64 LLAILGPSGCGKTTLLTALGGR 85 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~ 85 (604)
-++|+|++|+|||||++.+.+.
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999764
No 453
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.76 E-value=0.03 Score=59.76 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=23.6
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcC
Q 046786 59 VSPGELLAILGPSGCGKTTLLTALGGR 85 (604)
Q Consensus 59 i~~Ge~~aIlGpsGaGKSTLL~~L~g~ 85 (604)
-.+.+++.|+|++||||||+.+.|+..
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 346789999999999999999999864
No 454
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.76 E-value=0.033 Score=52.23 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRLS 87 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~~ 87 (604)
-++|+|++|+|||||++.+.+...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 479999999999999999998653
No 455
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.75 E-value=0.041 Score=53.32 Aligned_cols=59 Identities=20% Similarity=0.313 Sum_probs=39.4
Q ss_pred hhCCCeEEEeCCCC----CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCch---------HHHhhcCeEEEE
Q 046786 193 LINPSLLFLDEPTS----GLDSTMAKKILVSLSKLAEG-GRTILMTIHQPAS---------SLFYMFNKILLL 251 (604)
Q Consensus 193 ~~~p~illLDEPts----gLD~~~~~~i~~~l~~la~~-g~tvi~~~Hq~~~---------~i~~~~d~v~ll 251 (604)
-.+|+++++|--+. .-|.....+++..|++++++ |.+++++.|.... .+...+|-++.|
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l 205 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVL 205 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEE
Confidence 35788889886432 11445566778888888764 9999999985422 133567888777
No 456
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.63 E-value=0.026 Score=56.04 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=23.9
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 60 SPGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 60 ~~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
+++.+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 567899999999999999999998866
No 457
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.63 E-value=0.038 Score=52.55 Aligned_cols=43 Identities=16% Similarity=0.196 Sum_probs=30.7
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 046786 194 INPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPA 238 (604)
Q Consensus 194 ~~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~ 238 (604)
.+|.++++||.-. +|......+.+.+.+. ..+..+|++++++.
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence 3578999999765 7877777776666443 23567888888764
No 458
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.62 E-value=0.034 Score=57.66 Aligned_cols=24 Identities=33% Similarity=0.618 Sum_probs=21.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 046786 63 ELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 63 e~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.+++|.||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 378999999999999999999865
No 459
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.62 E-value=0.03 Score=55.56 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.++|+|++|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46999999999999999999864
No 460
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.60 E-value=0.026 Score=53.98 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=22.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 62 GELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 62 Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
+.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999999999864
No 461
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.59 E-value=0.037 Score=53.20 Aligned_cols=23 Identities=39% Similarity=0.627 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
++.|+||+||||+|.-+.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999998754
No 462
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.59 E-value=0.039 Score=59.67 Aligned_cols=35 Identities=23% Similarity=0.429 Sum_probs=29.0
Q ss_pred eeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 51 ILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 51 iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
+++.+ ..+-+|+..+|+||||+|||||++.|+...
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 45555 566789999999999999999999998754
No 463
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.57 E-value=0.035 Score=53.83 Aligned_cols=28 Identities=36% Similarity=0.413 Sum_probs=25.4
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046786 60 SPGELLAILGPSGCGKTTLLTALGGRLS 87 (604)
Q Consensus 60 ~~Ge~~aIlGpsGaGKSTLL~~L~g~~~ 87 (604)
++|.++.+.|++||||||+.+.|+..+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4688999999999999999999998764
No 464
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.54 E-value=0.057 Score=50.54 Aligned_cols=35 Identities=26% Similarity=0.138 Sum_probs=26.9
Q ss_pred ceeeceEEEEecCeEEEEECCCCCcHHHHHHHHHcC
Q 046786 50 MILKGVSGAVSPGELLAILGPSGCGKTTLLTALGGR 85 (604)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~ 85 (604)
..++..- .--.|.-++|.|+||+|||||...|..+
T Consensus 5 ~~lHas~-v~v~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 5 QTWHANF-LVIDKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEESEE-EEETTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEE-EEECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3455444 4456889999999999999999888763
No 465
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.53 E-value=0.037 Score=53.51 Aligned_cols=27 Identities=30% Similarity=0.373 Sum_probs=24.3
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046786 61 PGELLAILGPSGCGKTTLLTALGGRLS 87 (604)
Q Consensus 61 ~Ge~~aIlGpsGaGKSTLL~~L~g~~~ 87 (604)
+|.++.+-|++||||||+.+.|+..+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999998664
No 466
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.52 E-value=0.043 Score=53.48 Aligned_cols=28 Identities=32% Similarity=0.355 Sum_probs=24.7
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046786 60 SPGELLAILGPSGCGKTTLLTALGGRLS 87 (604)
Q Consensus 60 ~~Ge~~aIlGpsGaGKSTLL~~L~g~~~ 87 (604)
.+|.++.+.|++||||||+.+.|+..+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999987653
No 467
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.50 E-value=0.039 Score=53.86 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=23.8
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046786 61 PGELLAILGPSGCGKTTLLTALGGRLS 87 (604)
Q Consensus 61 ~Ge~~aIlGpsGaGKSTLL~~L~g~~~ 87 (604)
+|.+++|-|+.||||||+.+.|+..++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999998763
No 468
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.50 E-value=0.038 Score=53.18 Aligned_cols=22 Identities=32% Similarity=0.631 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 046786 64 LLAILGPSGCGKTTLLTALGGR 85 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~ 85 (604)
-++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999974
No 469
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.46 E-value=0.12 Score=64.73 Aligned_cols=35 Identities=31% Similarity=0.452 Sum_probs=30.3
Q ss_pred eeceEE--EEecCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 52 LKGVSG--AVSPGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 52 L~~vs~--~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
|+.+-+ =+++|+++.|-|++|+|||||+..++...
T Consensus 720 LD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~ 756 (2050)
T 3cmu_A 720 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 566664 69999999999999999999999988754
No 470
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.44 E-value=0.033 Score=55.50 Aligned_cols=23 Identities=22% Similarity=0.540 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.++++|++|+|||||+|.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999854
No 471
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.29 E-value=0.037 Score=53.01 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.++|+|++|+|||||++.++...
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 67999999999999999998743
No 472
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=93.24 E-value=0.018 Score=53.93 Aligned_cols=22 Identities=23% Similarity=0.555 Sum_probs=4.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 046786 64 LLAILGPSGCGKTTLLTALGGR 85 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~ 85 (604)
-++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999875
No 473
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.22 E-value=0.037 Score=52.25 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.+.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 47999999999999999998753
No 474
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=93.21 E-value=0.025 Score=52.39 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 046786 64 LLAILGPSGCGKTTLLTALGGR 85 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~ 85 (604)
-++|+|++|+|||||++.+.+.
T Consensus 24 ~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999653
No 475
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.17 E-value=0.046 Score=56.32 Aligned_cols=24 Identities=38% Similarity=0.639 Sum_probs=22.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 046786 63 ELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 63 e~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.++.|+||+|||||||-+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999865
No 476
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.97 E-value=0.009 Score=69.33 Aligned_cols=32 Identities=31% Similarity=0.591 Sum_probs=28.7
Q ss_pred EEEEecCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046786 56 SGAVSPGELLAILGPSGCGKTTLLTALGGRLS 87 (604)
Q Consensus 56 s~~i~~Ge~~aIlGpsGaGKSTLL~~L~g~~~ 87 (604)
++.+.+|+.+++.||||+|||||.++|++...
T Consensus 505 ~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp CCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred hcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 55678999999999999999999999999753
No 477
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=92.96 E-value=0.045 Score=54.62 Aligned_cols=25 Identities=28% Similarity=0.533 Sum_probs=22.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 046786 63 ELLAILGPSGCGKTTLLTALGGRLS 87 (604)
Q Consensus 63 e~~aIlGpsGaGKSTLL~~L~g~~~ 87 (604)
-.++++|.+|+|||||+|.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 4789999999999999999999653
No 478
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=92.85 E-value=0.043 Score=59.19 Aligned_cols=53 Identities=4% Similarity=0.065 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCC-CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 046786 181 GERKRISIGQELLINPSLLFLDEP-TSGLDSTMAKKILVSLSKLAEGGRTILMTIHQP 237 (604)
Q Consensus 181 GerqRvsia~~L~~~p~illLDEP-tsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~ 237 (604)
.+.+....+...+.+++++++... +.++.... ..+.+.++ +.++.+|++.+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~---~~~~pvilV~NK~ 141 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILY---RTKKPVVLAVNKL 141 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHT---TCCSCEEEEEECC
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHH---HcCCCEEEEEECc
Confidence 366666677777788887655544 34555543 44555543 3578888887764
No 479
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.81 E-value=0.063 Score=54.93 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=22.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 62 GELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 62 Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
..++.|+||+|||||||...|+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3578999999999999999999765
No 480
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=92.76 E-value=0.21 Score=57.34 Aligned_cols=23 Identities=43% Similarity=0.723 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.+.+.||+|+|||+|.++|+...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999864
No 481
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=92.74 E-value=0.079 Score=55.73 Aligned_cols=46 Identities=30% Similarity=0.466 Sum_probs=33.9
Q ss_pred ecCe-EEEEECCCCCcHHHHHHHHHcCCCC------CCCCccccEEEECCEeC
Q 046786 60 SPGE-LLAILGPSGCGKTTLLTALGGRLSN------GKDTVTQGHITYNGKQF 105 (604)
Q Consensus 60 ~~Ge-~~aIlGpsGaGKSTLL~~L~g~~~~------~~~~~~~G~I~~~G~~~ 105 (604)
+.|. -+||+|.+-+|||||+|.|+|.... ....|..|.+.++|..+
T Consensus 69 k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i 121 (376)
T 4a9a_A 69 RTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKI 121 (376)
T ss_dssp BCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEE
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEE
Confidence 3443 4899999999999999999995421 12345668888888654
No 482
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.72 E-value=0.015 Score=59.79 Aligned_cols=42 Identities=7% Similarity=0.144 Sum_probs=32.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 046786 195 NPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPA 238 (604)
Q Consensus 195 ~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~ 238 (604)
+++++++|| ...|++.....+.+.+.+... ...+|+++++|.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchh
Confidence 567999999 788999888888888877643 345666777664
No 483
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.55 E-value=0.064 Score=50.47 Aligned_cols=52 Identities=12% Similarity=0.232 Sum_probs=38.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC---------chHHHhhcCeEEEE
Q 046786 195 NPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQP---------ASSLFYMFNKILLL 251 (604)
Q Consensus 195 ~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~---------~~~i~~~~d~v~ll 251 (604)
+++++++||--. +|+ ++++.|++++++|..|+++.++. ...+...+|.+.-+
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l 136 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKK 136 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEEC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEe
Confidence 578999999743 443 46777888888899999988833 34566678888766
No 484
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.45 E-value=0.064 Score=56.87 Aligned_cols=25 Identities=28% Similarity=0.574 Sum_probs=22.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 62 GELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 62 Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-.+++|+||+|||||||.+.|+...
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3578999999999999999999765
No 485
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.42 E-value=0.069 Score=47.83 Aligned_cols=43 Identities=12% Similarity=0.029 Sum_probs=29.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q 046786 195 NPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPAS 239 (604)
Q Consensus 195 ~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~~ 239 (604)
+..+|++||.- .|++..+..+.+.++... .+..+|++++.+-.
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~~-~~~~~I~~t~~~~~ 118 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQEH-RPFRLIGIGDTSLV 118 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSSS-CSSCEEEEESSCHH
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhcC-CCEEEEEECCcCHH
Confidence 45789999984 688888888888883322 24567777776543
No 486
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.23 E-value=0.071 Score=52.19 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-+||+||+||||||+.+.|+..+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999998654
No 487
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.22 E-value=0.071 Score=50.00 Aligned_cols=42 Identities=12% Similarity=0.244 Sum_probs=29.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 046786 195 NPSLLFLDEPTSGLDSTMAKKILVSLSKLAEGGRTILMTIHQPA 238 (604)
Q Consensus 195 ~p~illLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~Hq~~ 238 (604)
++.++++||. ..++......+.+.+.+.. .+..+|++++.+.
T Consensus 102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~~-~~~~~i~~~~~~~ 143 (226)
T 2chg_A 102 PFKIIFLDEA-DALTADAQAALRRTMEMYS-KSCRFILSCNYVS 143 (226)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHTT-TTEEEEEEESCGG
T ss_pred CceEEEEeCh-hhcCHHHHHHHHHHHHhcC-CCCeEEEEeCChh
Confidence 6789999995 4567777777777666532 3456777777653
No 488
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.08 E-value=0.074 Score=53.55 Aligned_cols=27 Identities=33% Similarity=0.550 Sum_probs=23.3
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 60 SPGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 60 ~~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
+++.-+.|.||+|+|||||.+.++..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 455678999999999999999998765
No 489
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=92.01 E-value=0.037 Score=54.71 Aligned_cols=22 Identities=41% Similarity=0.762 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 046786 65 LAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 65 ~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
+.|.||+|+|||||.++|+...
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 6799999999999999999854
No 490
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.00 E-value=0.083 Score=54.98 Aligned_cols=26 Identities=38% Similarity=0.565 Sum_probs=22.8
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 61 PGELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 61 ~Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
..-.++|+|++|+|||||++.|++.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 44589999999999999999998764
No 491
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=91.97 E-value=0.053 Score=56.39 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
.++|+|.+|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
No 492
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=91.08 E-value=0.031 Score=52.64 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 046786 64 LLAILGPSGCGKTTLLTALGGR 85 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~ 85 (604)
-++|+|++|+|||||++.+.+.
T Consensus 32 ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 4799999999999999888753
No 493
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=91.68 E-value=0.092 Score=52.08 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=22.3
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcC
Q 046786 60 SPGELLAILGPSGCGKTTLLTALGGR 85 (604)
Q Consensus 60 ~~Ge~~aIlGpsGaGKSTLL~~L~g~ 85 (604)
.+..-+.|.||+|+|||||.++++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34457889999999999999999875
No 494
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=91.68 E-value=0.076 Score=56.32 Aligned_cols=79 Identities=11% Similarity=0.066 Sum_probs=44.8
Q ss_pred HHHHHHHHcCCCccccccccCccCCCcCHHHHHHHHHHHHHhhCCCeEEE---eCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 046786 152 HAEAVINQLGLARCRNSIIGGRLVRGLSGGERKRISIGQELLINPSLLFL---DEPTSGLDSTMAKKILVSLSKLAEGGR 228 (604)
Q Consensus 152 ~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRvsia~~L~~~p~illL---DEPtsgLD~~~~~~i~~~l~~la~~g~ 228 (604)
.+.++++.++.... ...+|.+|.+++.-..-+...|-++++ |.+ + ...+.+..+.+...|.
T Consensus 181 ~~~~~l~~l~~~~~---------~~~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~----~---~~~l~~l~~~~~~~~~ 244 (397)
T 1wxq_A 181 DVWEAMHKLNLPED---------PTKWSQDDLLAFASEIRRVNKPMVIAANKADAA----S---DEQIKRLVREEEKRGY 244 (397)
T ss_dssp HHHHHHHHTTCCSC---------GGGCCHHHHHHHHHHHHHHHSCEEEEEECGGGS----C---HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccCCc---------cccCCHHHHHHHHHhhhccCCCEEEEEeCcccc----c---hHHHHHHHHHHhhcCC
Confidence 45667777766532 237899998888777666779999887 443 1 1223222233333355
Q ss_pred EEEEEecCCchHHHhhcC
Q 046786 229 TILMTIHQPASSLFYMFN 246 (604)
Q Consensus 229 tvi~~~Hq~~~~i~~~~d 246 (604)
.+|.++-.-...+.++.+
T Consensus 245 ~vv~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 245 IVIPTSAAAELTLRKAAK 262 (397)
T ss_dssp EEEEECHHHHHHHHSCSS
T ss_pred cEEEEeccchhhHHHHHh
Confidence 555555433444544433
No 495
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=91.66 E-value=0.094 Score=52.88 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 046786 62 GELLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 62 Ge~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
+-.++++|.+|+|||||+|.|.|..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CceEEEEecCCCchHHHHHHHhcCc
Confidence 3468999999999999999999965
No 496
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=91.63 E-value=0.058 Score=51.45 Aligned_cols=22 Identities=41% Similarity=0.712 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHH-HHcC
Q 046786 64 LLAILGPSGCGKTTLLTA-LGGR 85 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~-L~g~ 85 (604)
-++|+|++|+|||||++. +.|.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 378999999999999998 6554
No 497
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=91.62 E-value=0.021 Score=53.69 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046786 64 LLAILGPSGCGKTTLLTALGGRL 86 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~~ 86 (604)
-++|+|++|+|||||++.|.+..
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999988753
No 498
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=91.60 E-value=0.096 Score=53.30 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 046786 63 ELLAILGPSGCGKTTLLTALGGR 85 (604)
Q Consensus 63 e~~aIlGpsGaGKSTLL~~L~g~ 85 (604)
--++|+|++|+|||||++.+.+.
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35799999999999999998876
No 499
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=91.51 E-value=0.079 Score=56.73 Aligned_cols=22 Identities=32% Similarity=0.714 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 046786 64 LLAILGPSGCGKTTLLTALGGR 85 (604)
Q Consensus 64 ~~aIlGpsGaGKSTLL~~L~g~ 85 (604)
.++|+|++|+|||||+|.|.|.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 500
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.47 E-value=0.11 Score=53.15 Aligned_cols=52 Identities=17% Similarity=0.081 Sum_probs=30.0
Q ss_pred hhCCCeEEEeCCC-CCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCchHHHhh
Q 046786 193 LINPSLLFLDEPT-SGLDSTMAKKILV-SLSKLAEGGRTILMTIHQPASSLFYM 244 (604)
Q Consensus 193 ~~~p~illLDEPt-sgLD~~~~~~i~~-~l~~la~~g~tvi~~~Hq~~~~i~~~ 244 (604)
+.++++|++||.- ..++...+..++. ++......++.+|+|++.+..++...
T Consensus 212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~~~~l~~~ 265 (308)
T 2qgz_A 212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYSFADLERK 265 (308)
T ss_dssp HHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSCHHHHHTT
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHH
Confidence 4578999999983 2344443444554 55554344667788888766565543
Done!