BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046787
         (412 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3U43|B Chain B, Crystal Structure Of The Colicin E2 Dnase-Im2 Complex
          Length = 134

 Score = 33.5 bits (75), Expect = 0.22,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 20  KSVSEFRCVCKSWCALINDPTFISNYTHFAIKNITSNSQVILRHYDRVNSQERFTLHHD 78
           K+  +FR   K W  +  DP     +      NI        R  D+V  +ERF LHHD
Sbjct: 48  KNFDDFRK--KFWEEVSKDPDLSKQFKGSNKTNIQKGKAPFARKKDQVGGRERFELHHD 104


>pdb|2FL4|A Chain A, The Crystal Structure Of The SpermineSPERMIDINE
           ACETYLTRANSFERASE From Enterococcus Faecalis
          Length = 149

 Score = 29.6 bits (65), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 6/86 (6%)

Query: 251 FKELNVPDELKTDELAYGREQKLFIGALDQKLALMHYYTQWYNSPSYDGCCIWMMKEYGL 310
           F+++   +    + L    EQ+ FI ++ + L     + +W ++  YDG  +     YG 
Sbjct: 6   FEKVTSDNRKAVENLQVFAEQQAFIESMAENLKESDQFPEWESAGIYDGNQLIGYAMYGR 65

Query: 311 ---GESWTKQFKIDLRL---GLGKMA 330
              G  W  +F ID R    G GK A
Sbjct: 66  WQDGRVWLDRFLIDQRFQGQGYGKAA 91


>pdb|3BYQ|A Chain A, Crystal Structure Of A Duf1185 Family Protein (Bb2672)
           From Bordetella Bronchiseptica Rb50 At 1.70 A Resolution
 pdb|3BYQ|B Chain B, Crystal Structure Of A Duf1185 Family Protein (Bb2672)
           From Bordetella Bronchiseptica Rb50 At 1.70 A Resolution
 pdb|3BYQ|C Chain C, Crystal Structure Of A Duf1185 Family Protein (Bb2672)
           From Bordetella Bronchiseptica Rb50 At 1.70 A Resolution
          Length = 193

 Score = 29.3 bits (64), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 3/33 (9%)

Query: 167 VRDHF---IIGVRDAPRPVVQVFALKVGSWRNV 196
           VR HF    IG++DAPRP   +FAL  G+   V
Sbjct: 142 VRSHFNSIEIGIQDAPRPREILFALVXGTGARV 174


>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
           Differences Between Active And Inactive Forms Of
           Protooncogenic Ras Proteins
          Length = 189

 Score = 28.1 bits (61), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 15/53 (28%), Positives = 26/53 (49%)

Query: 207 TVKTPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKELNVPDE 259
           TV++ QA      + + Y   S    QG++     L  ++R+   ++LN PDE
Sbjct: 124 TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNPPDE 176


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,067,236
Number of Sequences: 62578
Number of extensions: 551604
Number of successful extensions: 951
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 945
Number of HSP's gapped (non-prelim): 10
length of query: 412
length of database: 14,973,337
effective HSP length: 101
effective length of query: 311
effective length of database: 8,652,959
effective search space: 2691070249
effective search space used: 2691070249
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)