Query 046787
Match_columns 412
No_of_seqs 166 out of 1760
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 04:28:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046787.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046787hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 9.4E-34 2E-38 257.0 25.3 219 102-356 1-230 (230)
2 PF07734 FBA_1: F-box associat 99.7 9.5E-16 2E-20 131.1 17.1 147 212-378 1-164 (164)
3 PF08268 FBA_3: F-box associat 99.6 1.1E-14 2.4E-19 119.4 13.2 111 212-341 1-118 (129)
4 PLN03215 ascorbic acid mannose 99.3 2.7E-10 5.9E-15 107.6 21.5 308 3-363 5-355 (373)
5 PHA02713 hypothetical protein; 99.2 1E-09 2.2E-14 111.9 19.8 225 101-363 298-542 (557)
6 KOG4441 Proteins containing BT 99.1 4.7E-09 1E-13 106.8 19.2 217 101-362 327-554 (571)
7 KOG4441 Proteins containing BT 99.0 2.5E-08 5.5E-13 101.4 19.1 215 104-362 282-507 (571)
8 PHA02713 hypothetical protein; 98.9 1.7E-07 3.7E-12 95.6 22.5 226 122-384 273-520 (557)
9 PHA03098 kelch-like protein; P 98.9 1.2E-07 2.5E-12 97.0 21.0 201 121-362 311-519 (534)
10 PHA02790 Kelch-like protein; P 98.9 1.2E-07 2.7E-12 95.1 19.9 185 121-361 287-477 (480)
11 PLN02153 epithiospecifier prot 98.9 5.1E-07 1.1E-11 86.8 22.3 234 103-363 29-293 (341)
12 PF12937 F-box-like: F-box-lik 98.8 1.4E-09 3E-14 72.0 0.7 42 2-43 1-42 (47)
13 PLN02193 nitrile-specifier pro 98.8 5.4E-07 1.2E-11 90.3 19.5 204 121-363 193-419 (470)
14 TIGR03547 muta_rot_YjhT mutatr 98.7 5.4E-06 1.2E-10 79.9 21.9 230 104-362 15-306 (346)
15 TIGR03548 mutarot_permut cycli 98.6 3.5E-06 7.6E-11 80.4 19.5 152 183-362 90-287 (323)
16 PRK14131 N-acetylneuraminic ac 98.6 7.9E-06 1.7E-10 79.6 22.1 253 102-383 34-350 (376)
17 smart00256 FBOX A Receptor for 98.6 1.1E-08 2.4E-13 65.5 0.2 39 5-43 1-39 (41)
18 PLN02193 nitrile-specifier pro 98.5 1.8E-05 4E-10 79.3 20.9 159 183-363 195-360 (470)
19 PHA02790 Kelch-like protein; P 98.5 4.5E-06 9.7E-11 83.9 16.5 164 183-384 289-454 (480)
20 PF00646 F-box: F-box domain; 98.5 2.1E-08 4.6E-13 66.7 -0.3 42 3-44 4-45 (48)
21 PLN02153 epithiospecifier prot 98.5 6.5E-05 1.4E-09 72.2 22.7 200 102-320 81-294 (341)
22 PHA03098 kelch-like protein; P 98.4 1.7E-05 3.8E-10 81.0 18.0 197 122-362 265-472 (534)
23 PRK14131 N-acetylneuraminic ac 98.2 0.00023 4.9E-09 69.4 20.7 96 183-289 191-289 (376)
24 KOG4693 Uncharacterized conser 98.1 0.00017 3.6E-09 64.1 15.9 214 103-342 85-308 (392)
25 TIGR03548 mutarot_permut cycli 98.1 0.00033 7.1E-09 66.8 18.8 141 121-289 88-233 (323)
26 TIGR03547 muta_rot_YjhT mutatr 98.1 0.00047 1E-08 66.4 19.8 94 183-289 170-267 (346)
27 KOG4693 Uncharacterized conser 97.9 0.00015 3.3E-09 64.4 11.8 223 120-366 43-288 (392)
28 KOG1230 Protein containing rep 97.9 0.00055 1.2E-08 64.5 14.8 228 120-365 97-351 (521)
29 KOG0281 Beta-TrCP (transducin 97.7 0.00073 1.6E-08 62.1 12.0 43 2-44 75-121 (499)
30 KOG2120 SCF ubiquitin ligase, 97.0 0.00015 3.2E-09 65.9 0.0 41 3-43 99-139 (419)
31 KOG0379 Kelch repeat-containin 96.9 0.19 4.2E-06 50.6 21.0 209 122-365 89-312 (482)
32 KOG0379 Kelch repeat-containin 96.8 0.045 9.7E-07 55.1 15.6 160 183-363 90-258 (482)
33 KOG1230 Protein containing rep 96.5 0.056 1.2E-06 51.4 12.7 159 183-355 100-276 (521)
34 PF02191 OLF: Olfactomedin-lik 95.6 0.86 1.9E-05 41.5 15.6 134 207-363 69-212 (250)
35 PF13964 Kelch_6: Kelch motif 95.5 0.036 7.8E-07 36.6 4.9 40 210-255 5-44 (50)
36 KOG2997 F-box protein FBX9 [Ge 95.5 0.0027 5.8E-08 58.1 -0.8 42 3-44 108-154 (366)
37 smart00284 OLF Olfactomedin-li 95.3 1 2.2E-05 41.0 14.9 134 207-363 74-217 (255)
38 PF01344 Kelch_1: Kelch motif; 95.1 0.083 1.8E-06 34.2 5.5 39 210-254 5-43 (47)
39 KOG0274 Cdc4 and related F-box 94.9 3.8 8.2E-05 41.8 19.4 43 2-44 108-150 (537)
40 KOG4152 Host cell transcriptio 94.7 1.4 3.1E-05 43.4 14.9 209 120-363 56-311 (830)
41 PF13360 PQQ_2: PQQ-like domai 93.9 4 8.6E-05 36.4 15.8 29 333-361 209-237 (238)
42 PF07646 Kelch_2: Kelch motif; 93.0 0.29 6.4E-06 32.0 5.0 44 210-257 5-48 (49)
43 TIGR01640 F_box_assoc_1 F-box 91.6 9.7 0.00021 34.0 14.9 111 240-364 15-137 (230)
44 PF13360 PQQ_2: PQQ-like domai 90.9 11 0.00024 33.5 15.8 140 183-361 5-147 (238)
45 COG3055 Uncharacterized protei 90.6 3.1 6.7E-05 39.3 10.4 186 183-386 115-359 (381)
46 PRK11138 outer membrane biogen 90.6 18 0.00039 35.3 19.7 140 183-359 172-317 (394)
47 PF07250 Glyoxal_oxid_N: Glyox 90.6 5.9 0.00013 35.9 12.1 164 183-379 48-221 (243)
48 KOG2055 WD40 repeat protein [G 90.4 9.5 0.00021 37.2 13.7 103 239-362 280-382 (514)
49 PF07762 DUF1618: Protein of u 90.1 3.7 8E-05 33.2 9.6 83 240-322 7-98 (131)
50 KOG0316 Conserved WD40 repeat- 89.1 16 0.00035 32.7 14.4 130 183-360 83-219 (307)
51 PF07893 DUF1668: Protein of u 88.7 19 0.0004 34.6 14.8 132 100-258 70-221 (342)
52 PF13418 Kelch_4: Galactose ox 88.4 1 2.2E-05 29.3 4.2 38 211-254 6-44 (49)
53 PF08450 SGL: SMP-30/Gluconola 88.2 19 0.00041 32.4 23.0 203 103-364 8-223 (246)
54 COG2706 3-carboxymuconate cycl 88.1 24 0.00052 33.4 14.9 108 239-364 167-286 (346)
55 PRK11138 outer membrane biogen 87.2 31 0.00067 33.7 18.9 108 210-360 250-359 (394)
56 PF13964 Kelch_6: Kelch motif 86.8 1.7 3.8E-05 28.3 4.7 36 103-138 8-45 (50)
57 COG4257 Vgb Streptogramin lyas 86.7 6 0.00013 36.2 9.1 125 100-260 193-318 (353)
58 PF06433 Me-amine-dh_H: Methyl 86.5 11 0.00023 35.8 11.2 126 216-360 195-326 (342)
59 PF02897 Peptidase_S9_N: Proly 83.4 48 0.001 32.5 17.9 145 183-362 254-412 (414)
60 PF10282 Lactonase: Lactonase, 83.1 44 0.00096 31.9 17.4 118 216-363 154-286 (345)
61 KOG4341 F-box protein containi 82.0 0.42 9E-06 46.0 -0.1 38 3-40 73-110 (483)
62 smart00612 Kelch Kelch domain. 81.5 2.2 4.8E-05 26.9 3.3 19 183-203 17-35 (47)
63 TIGR03300 assembly_YfgL outer 79.9 41 0.00089 32.4 13.1 108 211-360 60-169 (377)
64 PF05096 Glu_cyclase_2: Glutam 79.2 52 0.0011 30.2 13.9 112 215-363 54-167 (264)
65 PF08450 SGL: SMP-30/Gluconola 77.9 52 0.0011 29.5 13.1 105 216-361 11-129 (246)
66 PF10282 Lactonase: Lactonase, 76.9 71 0.0015 30.5 17.6 108 240-362 215-332 (345)
67 TIGR03300 assembly_YfgL outer 76.9 73 0.0016 30.7 20.7 137 183-359 157-302 (377)
68 KOG1274 WD40 repeat protein [G 75.8 1.2E+02 0.0026 32.6 17.0 71 279-357 149-221 (933)
69 COG4946 Uncharacterized protei 75.6 89 0.0019 31.0 15.4 59 297-362 381-439 (668)
70 PRK11028 6-phosphogluconolacto 74.7 77 0.0017 29.8 13.8 134 183-355 14-157 (330)
71 PF13415 Kelch_3: Galactose ox 73.6 9.8 0.00021 24.6 4.7 34 216-254 1-34 (49)
72 PLN02772 guanylate kinase 73.6 23 0.0005 34.5 8.9 77 209-307 27-107 (398)
73 COG3055 Uncharacterized protei 72.5 92 0.002 29.8 17.0 139 183-342 198-356 (381)
74 TIGR03075 PQQ_enz_alc_DH PQQ-d 72.1 82 0.0018 32.2 13.2 118 210-361 63-196 (527)
75 KOG3545 Olfactomedin and relat 72.1 77 0.0017 28.7 11.5 146 191-363 56-211 (249)
76 KOG0310 Conserved WD40 repeat- 71.6 1.1E+02 0.0024 30.3 14.1 179 127-363 8-193 (487)
77 smart00564 PQQ beta-propeller 71.1 11 0.00024 21.7 4.1 25 336-360 6-30 (33)
78 PF07646 Kelch_2: Kelch motif; 70.8 8.6 0.00019 24.9 3.9 43 273-319 5-47 (49)
79 PF07893 DUF1668: Protein of u 70.5 50 0.0011 31.7 10.6 111 240-361 87-214 (342)
80 PF01011 PQQ: PQQ enzyme repea 70.5 9.5 0.00021 23.3 3.8 25 337-361 1-25 (38)
81 TIGR02658 TTQ_MADH_Hv methylam 69.4 1.1E+02 0.0024 29.5 14.1 126 215-361 204-338 (352)
82 PF03088 Str_synth: Strictosid 68.4 10 0.00022 28.5 4.3 32 330-361 3-52 (89)
83 PRK11028 6-phosphogluconolacto 67.1 1.1E+02 0.0024 28.7 16.2 74 279-362 238-314 (330)
84 COG4946 Uncharacterized protei 66.2 43 0.00093 33.1 8.9 91 247-364 214-305 (668)
85 KOG2437 Muskelin [Signal trans 65.2 10 0.00022 37.6 4.6 136 208-361 262-419 (723)
86 TIGR03074 PQQ_membr_DH membran 64.9 1.4E+02 0.003 32.2 13.3 127 209-361 187-351 (764)
87 KOG0294 WD40 repeat-containing 63.7 1.2E+02 0.0026 28.5 10.9 76 210-322 46-125 (362)
88 PF12458 DUF3686: ATPase invol 62.5 1.1E+02 0.0024 30.0 10.8 144 102-306 234-384 (448)
89 TIGR03866 PQQ_ABC_repeats PQQ- 61.6 1.2E+02 0.0027 27.3 15.3 107 239-364 179-290 (300)
90 PF13570 PQQ_3: PQQ-like domai 61.4 15 0.00033 22.5 3.5 21 335-355 20-40 (40)
91 KOG0647 mRNA export protein (c 61.0 60 0.0013 30.2 8.4 60 298-364 50-112 (347)
92 KOG0289 mRNA splicing factor [ 59.7 1.8E+02 0.0039 28.6 11.6 117 212-363 354-471 (506)
93 smart00612 Kelch Kelch domain. 59.3 32 0.0007 21.2 5.0 19 120-138 14-32 (47)
94 PF01344 Kelch_1: Kelch motif; 58.2 44 0.00095 20.9 6.7 42 273-320 5-46 (47)
95 PLN00181 protein SPA1-RELATED; 55.8 3E+02 0.0064 29.8 22.9 72 278-357 670-741 (793)
96 COG4257 Vgb Streptogramin lyas 55.0 1.4E+02 0.003 27.7 9.6 45 239-289 124-168 (353)
97 COG1520 FOG: WD40-like repeat 54.8 2E+02 0.0044 27.6 13.1 137 183-361 37-178 (370)
98 KOG0319 WD40-repeat-containing 53.4 3E+02 0.0064 29.1 14.3 191 101-358 25-226 (775)
99 KOG2437 Muskelin [Signal trans 52.6 24 0.00051 35.2 4.7 98 183-289 290-395 (723)
100 COG2706 3-carboxymuconate cycl 52.0 2.2E+02 0.0048 27.2 20.1 155 182-363 168-332 (346)
101 TIGR03866 PQQ_ABC_repeats PQQ- 50.2 1.9E+02 0.0042 26.0 20.1 29 330-358 162-191 (300)
102 PF08268 FBA_3: F-box associat 49.7 70 0.0015 25.5 6.6 41 345-385 19-63 (129)
103 KOG0315 G-protein beta subunit 46.6 2.3E+02 0.005 25.8 18.3 110 239-365 146-256 (311)
104 cd01206 Homer Homer type EVH1 46.5 60 0.0013 25.3 5.2 40 121-166 11-51 (111)
105 KOG1036 Mitotic spindle checkp 44.9 2.7E+02 0.0058 26.1 11.2 90 239-358 75-167 (323)
106 KOG0293 WD40 repeat-containing 44.2 3.2E+02 0.007 26.8 12.0 70 278-361 405-477 (519)
107 KOG0294 WD40 repeat-containing 42.8 96 0.0021 29.1 6.8 100 312-412 29-133 (362)
108 KOG2055 WD40 repeat protein [G 41.4 81 0.0018 31.1 6.4 62 298-363 235-297 (514)
109 KOG0301 Phospholipase A2-activ 40.9 4.5E+02 0.0098 27.6 11.9 50 239-307 200-250 (745)
110 KOG0291 WD40-repeat-containing 40.0 4.9E+02 0.011 27.7 18.5 112 211-357 439-553 (893)
111 cd01207 Ena-Vasp Enabled-VASP- 38.4 91 0.002 24.5 5.2 42 121-166 9-51 (111)
112 cd00216 PQQ_DH Dehydrogenases 38.2 4.3E+02 0.0093 26.6 11.6 31 210-253 55-87 (488)
113 TIGR02658 TTQ_MADH_Hv methylam 37.7 3.8E+02 0.0083 25.8 18.8 72 276-360 211-293 (352)
114 KOG2502 Tub family proteins [G 37.4 22 0.00048 33.6 1.9 36 3-38 46-89 (355)
115 PF13013 F-box-like_2: F-box-l 37.2 11 0.00023 29.6 -0.1 28 3-30 23-50 (109)
116 KOG2321 WD40 repeat protein [G 34.6 5.3E+02 0.012 26.6 13.4 108 216-360 145-264 (703)
117 PF08260 Kinin: Insect kinin p 32.9 26 0.00056 13.7 0.7 7 393-399 1-7 (8)
118 cd00216 PQQ_DH Dehydrogenases 32.3 5.4E+02 0.012 25.9 16.2 32 330-361 222-271 (488)
119 KOG2321 WD40 repeat protein [G 31.6 2.1E+02 0.0045 29.3 7.6 41 89-134 168-210 (703)
120 KOG2106 Uncharacterized conser 29.3 6.2E+02 0.013 25.7 17.4 70 297-378 389-458 (626)
121 KOG0293 WD40 repeat-containing 29.0 87 0.0019 30.5 4.4 67 279-359 323-389 (519)
122 KOG1520 Predicted alkaloid syn 28.8 5.5E+02 0.012 24.9 9.7 17 345-361 198-214 (376)
123 PF08683 CAMSAP_CKK: Microtubu 28.0 2E+02 0.0043 23.1 5.7 56 106-163 49-106 (123)
124 KOG0265 U5 snRNP-specific prot 27.3 3.8E+02 0.0083 25.1 8.0 67 279-358 58-124 (338)
125 KOG0299 U3 snoRNP-associated p 27.1 6.3E+02 0.014 25.1 12.4 34 99-136 206-239 (479)
126 KOG4378 Nuclear protein COP1 [ 27.0 6E+02 0.013 25.7 9.7 28 330-357 256-283 (673)
127 PF02239 Cytochrom_D1: Cytochr 26.5 5.3E+02 0.012 24.9 9.6 28 331-358 43-70 (369)
128 PF15408 PH_7: Pleckstrin homo 26.4 16 0.00035 26.9 -0.7 23 20-42 77-99 (104)
129 PF14339 DUF4394: Domain of un 25.0 2E+02 0.0044 25.9 5.8 56 104-165 36-93 (236)
130 PRK04043 tolB translocation pr 25.0 6.8E+02 0.015 24.7 22.7 192 120-363 212-409 (419)
131 cd00200 WD40 WD40 domain, foun 24.5 4.6E+02 0.0099 22.6 19.5 56 298-359 157-212 (289)
132 COG3386 Gluconolactonase [Carb 24.1 6.1E+02 0.013 23.9 11.6 33 216-260 36-68 (307)
133 KOG0319 WD40-repeat-containing 24.0 5.8E+02 0.012 27.0 9.3 97 239-358 40-139 (775)
134 PF09910 DUF2139: Uncharacteri 23.9 6.2E+02 0.013 23.9 9.7 98 239-358 78-185 (339)
135 KOG2048 WD40 repeat protein [G 23.5 8.7E+02 0.019 25.5 12.0 154 162-360 396-554 (691)
136 KOG0649 WD40 repeat protein [G 22.6 5.8E+02 0.013 23.3 8.0 65 298-362 81-152 (325)
137 PF00400 WD40: WD domain, G-be 22.5 1.7E+02 0.0037 17.0 6.2 24 329-352 16-39 (39)
138 PF13018 ESPR: Extended Signal 21.9 75 0.0016 17.4 1.5 15 124-138 7-21 (24)
139 TIGR02276 beta_rpt_yvtn 40-res 21.2 2E+02 0.0042 17.1 4.2 29 335-363 2-32 (42)
140 KOG0266 WD40 repeat-containing 20.3 8.6E+02 0.019 24.2 12.2 117 213-361 167-283 (456)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=100.00 E-value=9.4e-34 Score=256.97 Aligned_cols=219 Identities=23% Similarity=0.413 Sum_probs=158.6
Q ss_pred EEeeccEEEEeeeccCCCceeEEEEcCcCcceeecCCCCcC--CCcceEEEEeeeCCCCCEEEEEEEEEecccccccCCC
Q 046787 102 IGICYGLVCLLDYHQKGLSKSVIVWNPSLESCVRIMFKFTA--ANFESVHGFGFDPKSVDYKVVRIVVRDHFIIGVRDAP 179 (412)
Q Consensus 102 ~~s~~GLlll~~~~~~~~~~~~~V~NP~T~~~~~LP~p~~~--~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~ 179 (412)
++|||||||+... ..++||||+||+++.||+|... ......++||||+.+++||||++..... . .
T Consensus 1 ~~sCnGLlc~~~~------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~----~---~ 67 (230)
T TIGR01640 1 VVPCDGLICFSYG------KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSG----N---R 67 (230)
T ss_pred CcccceEEEEecC------CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecC----C---C
Confidence 4799999998754 6799999999999999985432 1122368999999999999999976422 0 1
Q ss_pred CCe-EEEEECCCCCceecCCCCCCceeeecCCCceEECCeEEEEeecCCCccccccccceeEEEEEECCCceEE-EecCC
Q 046787 180 RPV-VQVFALKVGSWRNVTTGDTSLCRITVKTPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFK-ELNVP 257 (412)
Q Consensus 180 ~~~-~~vyss~t~~Wr~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~-~i~~P 257 (412)
... ++||++++++||.++. .+... .....+|++||++||++...... ....|++||+.+|+|+ .+++|
T Consensus 68 ~~~~~~Vys~~~~~Wr~~~~--~~~~~-~~~~~~v~~~G~lyw~~~~~~~~-------~~~~IvsFDl~~E~f~~~i~~P 137 (230)
T TIGR01640 68 NQSEHQVYTLGSNSWRTIEC--SPPHH-PLKSRGVCINGVLYYLAYTLKTN-------PDYFIVSFDVSSERFKEFIPLP 137 (230)
T ss_pred CCccEEEEEeCCCCcccccc--CCCCc-cccCCeEEECCEEEEEEEECCCC-------CcEEEEEEEcccceEeeeeecC
Confidence 234 9999999999999942 22211 12234899999999999764311 1137999999999999 59999
Q ss_pred CCcccccccccccceeeEEEeCCeEEEEEEccccCCCCCCCcEEEEEEeecCCCcceeEEEEeeccC--Cc---cccEEE
Q 046787 258 DELKTDELAYGREQKLFIGALDQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQFKIDLRL--GL---GKMAGL 332 (412)
Q Consensus 258 ~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~--~~---~~p~~~ 332 (412)
......... ..|++++|+||++.... ...+++||+|++++. ..|+|.++|+.+. .+ ..|+++
T Consensus 138 ~~~~~~~~~------~~L~~~~G~L~~v~~~~------~~~~~~IWvl~d~~~-~~W~k~~~i~~~~~~~~~~~~~~~~~ 204 (230)
T TIGR01640 138 CGNSDSVDY------LSLINYKGKLAVLKQKK------DTNNFDLWVLNDAGK-QEWSKLFTVPIPPLPDLVDDNFLSGF 204 (230)
T ss_pred ccccccccc------eEEEEECCEEEEEEecC------CCCcEEEEEECCCCC-CceeEEEEEcCcchhhhhhheeEeEE
Confidence 754321122 67999999999998864 125699999998874 4599999998532 12 247888
Q ss_pred EecCCEEEEEEc-CCe-EEEEECCCC
Q 046787 333 RRNGEMLLVTRY-NEE-LVSFNTVNR 356 (412)
Q Consensus 333 ~~~g~~ill~~~-~~~-l~~yd~~t~ 356 (412)
..+|++++.... .+. ++.||++++
T Consensus 205 ~~~g~I~~~~~~~~~~~~~~y~~~~~ 230 (230)
T TIGR01640 205 TDKGEIVLCCEDENPFYIFYYNVGEN 230 (230)
T ss_pred eeCCEEEEEeCCCCceEEEEEeccCC
Confidence 877655554432 134 999999875
No 2
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.70 E-value=9.5e-16 Score=131.14 Aligned_cols=147 Identities=27% Similarity=0.435 Sum_probs=98.5
Q ss_pred ceEECCeEEEEeecCCCccccccccceeEEEEEECCCceE-EEecCCCCcccccccccccceeeEEEe-CCeEEEEEEcc
Q 046787 212 QAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVF-KELNVPDELKTDELAYGREQKLFIGAL-DQKLALMHYYT 289 (412)
Q Consensus 212 ~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~-~~i~~P~~~~~~~~~~~~~~~~~l~~~-~g~L~l~~~~~ 289 (412)
+|++||++||++....... ...|++||+.+|+| +.+++|......... ..|.+. +|+||++....
T Consensus 1 gV~vnG~~hW~~~~~~~~~-------~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~------~~L~~v~~~~L~~~~~~~ 67 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDE-------KDFILSFDLSTEKFGRSLPLPFCNDDDDDS------VSLSVVRGDCLCVLYQCD 67 (164)
T ss_pred CEEECCEEEeeEEecCCCC-------ceEEEEEeccccccCCEECCCCccCccCCE------EEEEEecCCEEEEEEecc
Confidence 5899999999998765321 12799999999999 889999876522222 567544 88999997654
Q ss_pred ccCCCCCCCcEEEEEEeecCC-CcceeEEEEeeccCCcc-------ccEEEEecCCEEEEEEc-C-----CeEEEEECCC
Q 046787 290 QWYNSPSYDGCCIWMMKEYGL-GESWTKQFKIDLRLGLG-------KMAGLRRNGEMLLVTRY-N-----EELVSFNTVN 355 (412)
Q Consensus 290 ~~~~~~~~~~l~iW~l~~~~~-~~~W~~~~~i~~~~~~~-------~p~~~~~~g~~ill~~~-~-----~~l~~yd~~t 355 (412)
....++||+|++++. ..+|+|.++|++..... ..+.+..++++++.... . ..++.|+ ++
T Consensus 68 ------~~~~~~IWvm~~~~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~ 140 (164)
T PF07734_consen 68 ------ETSKIEIWVMKKYGYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-ED 140 (164)
T ss_pred ------CCccEEEEEEeeeccCcceEEEEEEEecCCCCCcccccccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CC
Confidence 245699999998753 78999999999643221 12333333333333221 1 3477777 66
Q ss_pred CcEEEEEEecc-cceEEEeeeeec
Q 046787 356 RKMQKLGIYGE-TWSFFLDTYVES 378 (412)
Q Consensus 356 ~~~~~v~~~~~-~~~~~~~~y~~s 378 (412)
+..+++.+... ..++.+..|+||
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~YvpS 164 (164)
T PF07734_consen 141 GKFIEVDIEDKSSCWPSICNYVPS 164 (164)
T ss_pred CEEEEcccccCCCCCCCEEEECCC
Confidence 77777776322 245667788886
No 3
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.61 E-value=1.1e-14 Score=119.37 Aligned_cols=111 Identities=24% Similarity=0.499 Sum_probs=79.5
Q ss_pred ceEECCeEEEEeecCCCccccccccceeEEEEEECCCceEEEecCCCCcccccccccccceeeEEEeCCeEEEEEEcccc
Q 046787 212 QAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKELNVPDELKTDELAYGREQKLFIGALDQKLALMHYYTQW 291 (412)
Q Consensus 212 ~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~ 291 (412)
++++||++||++..... ....|++||+++|+|+.|++|......... ..|++++|+|+++.....
T Consensus 1 gicinGvly~~a~~~~~--------~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~------~~L~~~~G~L~~v~~~~~- 65 (129)
T PF08268_consen 1 GICINGVLYWLAWSEDS--------DNNVIVSFDVRSEKFRFIKLPEDPYSSDCS------STLIEYKGKLALVSYNDQ- 65 (129)
T ss_pred CEEECcEEEeEEEECCC--------CCcEEEEEEcCCceEEEEEeeeeeccccCc------cEEEEeCCeEEEEEecCC-
Confidence 58999999999987322 237899999999999999999222122223 789999999999988751
Q ss_pred CCCCCCCcEEEEEEeecCCCcceeEEEEeeccC--C-----ccccEEEEecCCEEEE
Q 046787 292 YNSPSYDGCCIWMMKEYGLGESWTKQFKIDLRL--G-----LGKMAGLRRNGEMLLV 341 (412)
Q Consensus 292 ~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~--~-----~~~p~~~~~~g~~ill 341 (412)
.....++||+|++++ +++|++.+.+-... . ...++++..+|++|+.
T Consensus 66 ---~~~~~~~iWvLeD~~-k~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 66 ---GEPDSIDIWVLEDYE-KQEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred ---CCcceEEEEEeeccc-cceEEEEEEECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence 013469999999886 67899886543221 1 1256677777666655
No 4
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.33 E-value=2.7e-10 Score=107.60 Aligned_cols=308 Identities=12% Similarity=0.070 Sum_probs=151.6
Q ss_pred CCCcHHHHHHHHccCCcc-cceeeeecchhhhhhhcCccccccccccccccCCCCCeEEEEeeccCCCCceEeeccCCCC
Q 046787 3 DYVPEEVVAQILFRLPAK-SVSEFRCVCKSWCALINDPTFISNYTHFAIKNITSNSQVILRHYDRVNSQERFTLHHDGIS 81 (412)
Q Consensus 3 ~~LP~Dll~eIL~rLP~k-sl~r~r~VcK~W~~li~~p~F~~~~~~~~~~~~~~~~~lll~~~~~~~~~~~~~~~~~~~~ 81 (412)
+.||+|||..|..|||.+ +++|||+|||+||+.+....= .. ++. ++|.+++... ... ..+.+ +...
T Consensus 5 s~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~~-~~---~~~----~~~~~~~~~~-~~~-~~~~~---~~~~ 71 (373)
T PLN03215 5 STLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVGK-KN---PFR----TRPLILFNPI-NPS-ETLTD---DRSY 71 (373)
T ss_pred hhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccccc-cC---Ccc----cccccccCcc-cCC-CCccc---cccc
Confidence 579999999999999866 999999999999998763110 00 111 1223332210 000 00000 0000
Q ss_pred cccceecCCCCCCCCCCcEE---EEeeccEEEEeeeccCCCceeEEEEcCcCcceeecCCCCc--CCC----cceEEEE-
Q 046787 82 FSPIKELDLPFENKPDSFNV---IGICYGLVCLLDYHQKGLSKSVIVWNPSLESCVRIMFKFT--AAN----FESVHGF- 151 (412)
Q Consensus 82 ~~~~~~~~~p~~~~~~~~~i---~~s~~GLlll~~~~~~~~~~~~~V~NP~T~~~~~LP~p~~--~~~----~~~~~~~- 151 (412)
+... ..+......+.+ .++..|+|.-..... ..+++.+.||+++.-..+|+-.. ... ....+.+
T Consensus 72 ~~~~----~~~ls~~~~~r~~~~~~~~~~WLik~~~~~--~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l~ 145 (373)
T PLN03215 72 ISRP----GAFLSRAAFFRVTLSSSPSKGWLIKSDMDV--NSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQVL 145 (373)
T ss_pred cccc----cceeeeeEEEEeecCCCCCCCcEEEEeccc--cCCccEecCccccCccCCCCccceeeeeEEEEccceEEEE
Confidence 0000 000000000111 135677776654321 14788999999999877775111 100 0111111
Q ss_pred eeeCC---CCCEE--EEEEEEEec-ccccccCCCCCeEEEE------ECCCCCceecCCCCCCceeeecCCCceEECCeE
Q 046787 152 GFDPK---SVDYK--VVRIVVRDH-FIIGVRDAPRPVVQVF------ALKVGSWRNVTTGDTSLCRITVKTPQAYVNGTL 219 (412)
Q Consensus 152 g~d~~---~~~yk--Vv~~~~~~~-~~~~~~~~~~~~~~vy------ss~t~~Wr~~~~~~~p~~~~~~~~~~v~~~G~l 219 (412)
+.+.. ...|+ ++......+ .++| .+-|+ ..+.++|..++ .... .....|+.+|.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------vl~i~~~g~l~~w~~~~Wt~l~--~~~~----~~~DIi~~kGkf 212 (373)
T PLN03215 146 DWAKRRETRPGYQRSALVKVKEGDNHRDG-------VLGIGRDGKINYWDGNVLKALK--QMGY----HFSDIIVHKGQT 212 (373)
T ss_pred ecccccccccceeEEEEEEeecCCCcceE-------EEEEeecCcEeeecCCeeeEcc--CCCc----eeeEEEEECCEE
Confidence 11100 11132 221111001 0000 01221 12357888883 3322 223568899999
Q ss_pred EEEeecCCCccccccccceeEEEEEECCCceEEEecCCCCc-ccccccccccceeeEEEeCCeEEEEEEccccCC-----
Q 046787 220 HWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKELNVPDEL-KTDELAYGREQKLFIGALDQKLALMHYYTQWYN----- 293 (412)
Q Consensus 220 ywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~-~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~----- 293 (412)
|-+...+ .+..+|.+- +.+.+..+... ..++. +.....|++..|.|.+|........
T Consensus 213 YAvD~~G-------------~l~~i~~~l-~i~~v~~~i~~~~~~g~---~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~ 275 (373)
T PLN03215 213 YALDSIG-------------IVYWINSDL-EFSRFGTSLDENITDGC---WTGDRRFVECCGELYIVERLPKESTWKRKA 275 (373)
T ss_pred EEEcCCC-------------eEEEEecCC-ceeeecceecccccCCc---ccCceeEEEECCEEEEEEEEccCccccccc
Confidence 9985432 366666322 12222111100 00000 0011679999999999987431100
Q ss_pred ----CCCCCcEEEEEEeecCCCcceeEEEEeeccCCc----cccEEEE------ecCCEEEEEEcCCeEEEEECCCCcEE
Q 046787 294 ----SPSYDGCCIWMMKEYGLGESWTKQFKIDLRLGL----GKMAGLR------RNGEMLLVTRYNEELVSFNTVNRKMQ 359 (412)
Q Consensus 294 ----~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~----~~p~~~~------~~g~~ill~~~~~~l~~yd~~t~~~~ 359 (412)
......++|+.++. ....|+++.+++- ..+ ...+++. -.++.||+.. +....+||++.+++.
T Consensus 276 ~~~~~~~t~~f~VfklD~--~~~~WveV~sLgd-~aLFlG~~~s~sv~a~e~pG~k~NcIYFtd-d~~~~v~~~~dg~~~ 351 (373)
T PLN03215 276 DGFEYSRTVGFKVYKFDD--ELAKWMEVKTLGD-NAFVMATDTCFSVLAHEFYGCLPNSIYFTE-DTMPKVFKLDNGNGS 351 (373)
T ss_pred ccccccceeEEEEEEEcC--CCCcEEEecccCC-eEEEEECCccEEEecCCCCCccCCEEEEEC-CCcceEEECCCCCcc
Confidence 01134688888875 3468999988762 111 1122221 1347898864 445889999999987
Q ss_pred EEEE
Q 046787 360 KLGI 363 (412)
Q Consensus 360 ~v~~ 363 (412)
-+..
T Consensus 352 ~~~~ 355 (373)
T PLN03215 352 SIET 355 (373)
T ss_pred ceEe
Confidence 7644
No 5
>PHA02713 hypothetical protein; Provisional
Probab=99.21 E-value=1e-09 Score=111.87 Aligned_cols=225 Identities=9% Similarity=0.057 Sum_probs=133.3
Q ss_pred EEEeeccEEEEeeecc-C-CCceeEEEEcCcCcceeecCCCCcCCCcceEEEEeeeCCCCCEEEEEEEEEecccccccCC
Q 046787 101 VIGICYGLVCLLDYHQ-K-GLSKSVIVWNPSLESCVRIMFKFTAANFESVHGFGFDPKSVDYKVVRIVVRDHFIIGVRDA 178 (412)
Q Consensus 101 i~~s~~GLlll~~~~~-~-~~~~~~~V~NP~T~~~~~LP~p~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~ 178 (412)
-.+..+|.|.+..+.. . .....+..+||.+++|..+|+.........++.++ =+|..+..... .
T Consensus 298 ~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~-------g~IYviGG~~~-------~ 363 (557)
T PHA02713 298 ASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVID-------DTIYAIGGQNG-------T 363 (557)
T ss_pred EEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEEC-------CEEEEECCcCC-------C
Confidence 3455677666554421 1 11356788999999999999833222122333332 14444432211 1
Q ss_pred CCCe-EEEEECCCCCceecCCCCCCceeeecCCCceEECCeEEEEeecCCCccc---c--------ccccceeEEEEEEC
Q 046787 179 PRPV-VQVFALKVGSWRNVTTGDTSLCRITVKTPQAYVNGTLHWVGYDTESHHV---A--------QGIQRRLVLLAFDL 246 (412)
Q Consensus 179 ~~~~-~~vyss~t~~Wr~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~---~--------~~~~~~~~il~fD~ 246 (412)
.... +++|++.+++|..+ +.+|.. ......+.++|.||.+++....... . ........+.+||+
T Consensus 364 ~~~~sve~Ydp~~~~W~~~--~~mp~~--r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP 439 (557)
T PHA02713 364 NVERTIECYTMGDDKWKML--PDMPIA--LSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDT 439 (557)
T ss_pred CCCceEEEEECCCCeEEEC--CCCCcc--cccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECC
Confidence 1123 99999999999999 556642 2334567899999999875421000 0 00001256999999
Q ss_pred CCceEEEe-cCCCCcccccccccccceeeEEEeCCeEEEEEEccccCCCCCCCcEEEEEEeecCCC--cceeEEEEeecc
Q 046787 247 REEVFKEL-NVPDELKTDELAYGREQKLFIGALDQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLG--ESWTKQFKIDLR 323 (412)
Q Consensus 247 ~~e~~~~i-~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~~~~l~iW~l~~~~~~--~~W~~~~~i~~~ 323 (412)
.+++|+.+ ++|.... . ..+++++|+||+++...+ ...+ .=..+.|+.. .+|+....++.+
T Consensus 440 ~td~W~~v~~m~~~r~----~------~~~~~~~~~IYv~GG~~~------~~~~-~~~ve~Ydp~~~~~W~~~~~m~~~ 502 (557)
T PHA02713 440 VNNIWETLPNFWTGTI----R------PGVVSHKDDIYVVCDIKD------EKNV-KTCIFRYNTNTYNGWELITTTESR 502 (557)
T ss_pred CCCeEeecCCCCcccc----c------CcEEEECCEEEEEeCCCC------CCcc-ceeEEEecCCCCCCeeEccccCcc
Confidence 99999987 3443321 1 467899999999987641 1111 1123445433 479998876643
Q ss_pred CCccccEEEEecCCEEEEEEc-CC--eEEEEECCCCcEEEEEE
Q 046787 324 LGLGKMAGLRRNGEMLLVTRY-NE--ELVSFNTVNRKMQKLGI 363 (412)
Q Consensus 324 ~~~~~p~~~~~~g~~ill~~~-~~--~l~~yd~~t~~~~~v~~ 363 (412)
... ...++. ++.|++.+. ++ .+-.||+.|++|+.+.-
T Consensus 503 r~~-~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 503 LSA-LHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNHICH 542 (557)
T ss_pred ccc-ceeEEE--CCEEEEEeeecceeehhhcCcccccccchhh
Confidence 222 222222 356666533 33 58899999999998854
No 6
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.11 E-value=4.7e-09 Score=106.75 Aligned_cols=217 Identities=12% Similarity=0.093 Sum_probs=140.7
Q ss_pred EEEeeccEEEEeeecc--CCCceeEEEEcCcCcceeecCCCCcCCCcceEEEEeeeCCCCCEEEEEEEEEecccccccCC
Q 046787 101 VIGICYGLVCLLDYHQ--KGLSKSVIVWNPSLESCVRIMFKFTAANFESVHGFGFDPKSVDYKVVRIVVRDHFIIGVRDA 178 (412)
Q Consensus 101 i~~s~~GLlll~~~~~--~~~~~~~~V~NP~T~~~~~LP~p~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~ 178 (412)
-++..+|.|....+.. ...-+.+..+||.+++|..+|+-...+....+..++ .++.++...+. .
T Consensus 327 ~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~-------g~iYavGG~dg-------~ 392 (571)
T KOG4441|consen 327 GVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLD-------GKLYAVGGFDG-------E 392 (571)
T ss_pred cEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEEC-------CEEEEEecccc-------c
Confidence 4567777776665433 123467899999999999999844332222222222 34444432221 1
Q ss_pred CCCe-EEEEECCCCCceecCCCCCCceeeecCCCceEECCeEEEEeecCCCccccccccceeEEEEEECCCceEEEe-cC
Q 046787 179 PRPV-VQVFALKVGSWRNVTTGDTSLCRITVKTPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKEL-NV 256 (412)
Q Consensus 179 ~~~~-~~vyss~t~~Wr~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i-~~ 256 (412)
.... +|.|+..++.|..+ +.++. ......++.++|.||.+++...... .-..+.+||+.+++|+.+ ++
T Consensus 393 ~~l~svE~YDp~~~~W~~v--a~m~~--~r~~~gv~~~~g~iYi~GG~~~~~~------~l~sve~YDP~t~~W~~~~~M 462 (571)
T KOG4441|consen 393 KSLNSVECYDPVTNKWTPV--APMLT--RRSGHGVAVLGGKLYIIGGGDGSSN------CLNSVECYDPETNTWTLIAPM 462 (571)
T ss_pred cccccEEEecCCCCccccc--CCCCc--ceeeeEEEEECCEEEEEcCcCCCcc------ccceEEEEcCCCCceeecCCc
Confidence 2233 99999999999999 44544 3344567789999999998665321 226899999999999987 55
Q ss_pred CCCcccccccccccceeeEEEeCCeEEEEEEccccCCCCCCCcEEEEEEeecC-CCcceeEEEEeeccCCccccEEEEec
Q 046787 257 PDELKTDELAYGREQKLFIGALDQKLALMHYYTQWYNSPSYDGCCIWMMKEYG-LGESWTKQFKIDLRLGLGKMAGLRRN 335 (412)
Q Consensus 257 P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~~~~l~iW~l~~~~-~~~~W~~~~~i~~~~~~~~p~~~~~~ 335 (412)
+.... . ..+++++|+||+++..++ ... +-..+-|+ ....|+.+..+..+. ...++...
T Consensus 463 ~~~R~----~------~g~a~~~~~iYvvGG~~~------~~~--~~~VE~ydp~~~~W~~v~~m~~~r---s~~g~~~~ 521 (571)
T KOG4441|consen 463 NTRRS----G------FGVAVLNGKIYVVGGFDG------TSA--LSSVERYDPETNQWTMVAPMTSPR---SAVGVVVL 521 (571)
T ss_pred ccccc----c------ceEEEECCEEEEECCccC------CCc--cceEEEEcCCCCceeEcccCcccc---ccccEEEE
Confidence 65442 2 568999999999999861 111 21234444 346899986554322 22333333
Q ss_pred CCEEEEEEc------CCeEEEEECCCCcEEEEE
Q 046787 336 GEMLLVTRY------NEELVSFNTVNRKMQKLG 362 (412)
Q Consensus 336 g~~ill~~~------~~~l~~yd~~t~~~~~v~ 362 (412)
++.+|+... -..+-.||+.+++|+.+.
T Consensus 522 ~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~ 554 (571)
T KOG4441|consen 522 GGKLYAVGGFDGNNNLNTVECYDPETDTWTEVT 554 (571)
T ss_pred CCEEEEEecccCccccceeEEcCCCCCceeeCC
Confidence 467776632 235899999999999874
No 7
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.00 E-value=2.5e-08 Score=101.44 Aligned_cols=215 Identities=12% Similarity=0.081 Sum_probs=136.6
Q ss_pred eeccEEEEeeeccC--CCceeEEEEcCcCcceeecCCCCcCCCcceEEEEeeeCCCCCEEEEEEEEEecccccccCCCCC
Q 046787 104 ICYGLVCLLDYHQK--GLSKSVIVWNPSLESCVRIMFKFTAANFESVHGFGFDPKSVDYKVVRIVVRDHFIIGVRDAPRP 181 (412)
Q Consensus 104 s~~GLlll~~~~~~--~~~~~~~V~NP~T~~~~~LP~p~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~ 181 (412)
++.+.|.+..+... .....+..+||.+++|..+.+.........+..++ + +|..+...+. +....
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~-----~--~lYv~GG~~~------~~~~l 348 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN-----G--KLYVVGGYDS------GSDRL 348 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEEC-----C--EEEEEccccC------CCccc
Confidence 44455544433221 12356778899999999998843322223333222 1 4444432210 11223
Q ss_pred e-EEEEECCCCCceecCCCCCCceeeecCCCceEECCeEEEEeecCCCccccccccceeEEEEEECCCceEEEec-CCCC
Q 046787 182 V-VQVFALKVGSWRNVTTGDTSLCRITVKTPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKELN-VPDE 259 (412)
Q Consensus 182 ~-~~vyss~t~~Wr~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~-~P~~ 259 (412)
. +++|++.++.|..+ +.+.. .......+.++|.+|-+++..+.. .-..+..||+.+++|..+. ++..
T Consensus 349 ~~ve~YD~~~~~W~~~--a~M~~--~R~~~~v~~l~g~iYavGG~dg~~-------~l~svE~YDp~~~~W~~va~m~~~ 417 (571)
T KOG4441|consen 349 SSVERYDPRTNQWTPV--APMNT--KRSDFGVAVLDGKLYAVGGFDGEK-------SLNSVECYDPVTNKWTPVAPMLTR 417 (571)
T ss_pred ceEEEecCCCCceecc--CCccC--ccccceeEEECCEEEEEecccccc-------ccccEEEecCCCCcccccCCCCcc
Confidence 4 99999999999998 44443 345556778999999999876422 2257999999999999984 5552
Q ss_pred cccccccccccceeeEEEeCCeEEEEEEccccCCCCCCCcEEEEEEeecC-CCcceeEEEEeeccCCccccEEEEecCCE
Q 046787 260 LKTDELAYGREQKLFIGALDQKLALMHYYTQWYNSPSYDGCCIWMMKEYG-LGESWTKQFKIDLRLGLGKMAGLRRNGEM 338 (412)
Q Consensus 260 ~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~~~~l~iW~l~~~~-~~~~W~~~~~i~~~~~~~~p~~~~~~g~~ 338 (412)
.. . ...++++|+||++++.. ...-.+=.++-|+ ....|+....+...... ..+++. ++.
T Consensus 418 r~----~------~gv~~~~g~iYi~GG~~-------~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~-~g~a~~--~~~ 477 (571)
T KOG4441|consen 418 RS----G------HGVAVLGGKLYIIGGGD-------GSSNCLNSVECYDPETNTWTLIAPMNTRRSG-FGVAVL--NGK 477 (571)
T ss_pred ee----e------eEEEEECCEEEEEcCcC-------CCccccceEEEEcCCCCceeecCCccccccc-ceEEEE--CCE
Confidence 21 1 67899999999999876 2222343445554 45789998877643222 223333 357
Q ss_pred EEEEEc------CCeEEEEECCCCcEEEEE
Q 046787 339 LLVTRY------NEELVSFNTVNRKMQKLG 362 (412)
Q Consensus 339 ill~~~------~~~l~~yd~~t~~~~~v~ 362 (412)
||..+. ...+-.||+++++|..+.
T Consensus 478 iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 478 IYVVGGFDGTSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred EEEECCccCCCccceEEEEcCCCCceeEcc
Confidence 776643 223889999999999985
No 8
>PHA02713 hypothetical protein; Provisional
Probab=98.94 E-value=1.7e-07 Score=95.63 Aligned_cols=226 Identities=10% Similarity=0.041 Sum_probs=128.4
Q ss_pred eEEEEcCcCcceeecCCCCcCCCcceEEEEeeeCCCCCEEEEEEEEEecccccccCCCCCe-EEEEECCCCCceecCCCC
Q 046787 122 SVIVWNPSLESCVRIMFKFTAANFESVHGFGFDPKSVDYKVVRIVVRDHFIIGVRDAPRPV-VQVFALKVGSWRNVTTGD 200 (412)
Q Consensus 122 ~~~V~NP~T~~~~~LP~p~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~-~~vyss~t~~Wr~~~~~~ 200 (412)
.+..+||.+++|..+++.+........+.++ =+|..++.... +..... ++.|++.++.|..+ +.
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~-------~~IYviGG~~~------~~~~~~~v~~Yd~~~n~W~~~--~~ 337 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIVD-------NEIIIAGGYNF------NNPSLNKVYKINIENKIHVEL--PP 337 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEEC-------CEEEEEcCCCC------CCCccceEEEEECCCCeEeeC--CC
Confidence 4677899999999998733222122222221 13444432110 001123 99999999999998 55
Q ss_pred CCceeeecCCCceEECCeEEEEeecCCCccccccccceeEEEEEECCCceEEEe-cCCCCcccccccccccceeeEEEeC
Q 046787 201 TSLCRITVKTPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKEL-NVPDELKTDELAYGREQKLFIGALD 279 (412)
Q Consensus 201 ~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i-~~P~~~~~~~~~~~~~~~~~l~~~~ 279 (412)
+|. .......+.++|++|.+++..... ....+.+||+.+++|+.+ ++|.... . ...++++
T Consensus 338 m~~--~R~~~~~~~~~g~IYviGG~~~~~-------~~~sve~Ydp~~~~W~~~~~mp~~r~----~------~~~~~~~ 398 (557)
T PHA02713 338 MIK--NRCRFSLAVIDDTIYAIGGQNGTN-------VERTIECYTMGDDKWKMLPDMPIALS----S------YGMCVLD 398 (557)
T ss_pred Ccc--hhhceeEEEECCEEEEECCcCCCC-------CCceEEEEECCCCeEEECCCCCcccc----c------ccEEEEC
Confidence 654 223446778999999999864321 124699999999999987 4454332 1 4567889
Q ss_pred CeEEEEEEccccCCC-CCC---------CcEEEEEEeecC-CCcceeEEEEeeccCCccccEEEEecCCEEEEEEc-C--
Q 046787 280 QKLALMHYYTQWYNS-PSY---------DGCCIWMMKEYG-LGESWTKQFKIDLRLGLGKMAGLRRNGEMLLVTRY-N-- 345 (412)
Q Consensus 280 g~L~l~~~~~~~~~~-~~~---------~~l~iW~l~~~~-~~~~W~~~~~i~~~~~~~~p~~~~~~g~~ill~~~-~-- 345 (412)
|+|+++++....... ... .....-.++.|+ ....|+....+..+.. ...+++. + +.||+.+. +
T Consensus 399 g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~-~~~~~~~-~-~~IYv~GG~~~~ 475 (557)
T PHA02713 399 QYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTI-RPGVVSH-K-DDIYVVCDIKDE 475 (557)
T ss_pred CEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccc-cCcEEEE-C-CEEEEEeCCCCC
Confidence 999999876410000 000 000011233343 2467998765543221 1222322 3 56666532 1
Q ss_pred ----CeEEEEECCC-CcEEEEEE-ecccceEEEeeeeecceeccc
Q 046787 346 ----EELVSFNTVN-RKMQKLGI-YGETWSFFLDTYVESLVLMQR 384 (412)
Q Consensus 346 ----~~l~~yd~~t-~~~~~v~~-~~~~~~~~~~~y~~slv~~~~ 384 (412)
..+..||+++ ++|+.+.- +.......+..+...+--++.
T Consensus 476 ~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg 520 (557)
T PHA02713 476 KNVKTCIFRYNTNTYNGWELITTTESRLSALHTILHDNTIMMLHC 520 (557)
T ss_pred CccceeEEEecCCCCCCeeEccccCcccccceeEEECCEEEEEee
Confidence 2367999999 89998842 222223445555555555543
No 9
>PHA03098 kelch-like protein; Provisional
Probab=98.93 E-value=1.2e-07 Score=96.96 Aligned_cols=201 Identities=11% Similarity=0.032 Sum_probs=120.2
Q ss_pred eeEEEEcCcCcceeecCCCCcCCCcceEEEEeeeCCCCCEEEEEEEEEecccccccCCCCCe-EEEEECCCCCceecCCC
Q 046787 121 KSVIVWNPSLESCVRIMFKFTAANFESVHGFGFDPKSVDYKVVRIVVRDHFIIGVRDAPRPV-VQVFALKVGSWRNVTTG 199 (412)
Q Consensus 121 ~~~~V~NP~T~~~~~LP~p~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~-~~vyss~t~~Wr~~~~~ 199 (412)
..++.+||.|++|..+|+.........++.++ + ++..+..... ..... +++|+..+++|+.. +
T Consensus 311 ~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~------~-~lyv~GG~~~-------~~~~~~v~~yd~~~~~W~~~--~ 374 (534)
T PHA03098 311 NSVVSYDTKTKSWNKVPELIYPRKNPGVTVFN------N-RIYVIGGIYN-------SISLNTVESWKPGESKWREE--P 374 (534)
T ss_pred ccEEEEeCCCCeeeECCCCCcccccceEEEEC------C-EEEEEeCCCC-------CEecceEEEEcCCCCceeeC--C
Confidence 46889999999999999833222122222222 1 2444432111 01123 99999999999998 4
Q ss_pred CCCceeeecCCCceEECCeEEEEeecCCCccccccccceeEEEEEECCCceEEEec-CCCCcccccccccccceeeEEEe
Q 046787 200 DTSLCRITVKTPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKELN-VPDELKTDELAYGREQKLFIGAL 278 (412)
Q Consensus 200 ~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~-~P~~~~~~~~~~~~~~~~~l~~~ 278 (412)
.+|.. .....++.++|.+|.+++...... ....+..||+.+++|+.++ +|.... . ...+..
T Consensus 375 ~lp~~--r~~~~~~~~~~~iYv~GG~~~~~~------~~~~v~~yd~~t~~W~~~~~~p~~r~----~------~~~~~~ 436 (534)
T PHA03098 375 PLIFP--RYNPCVVNVNNLIYVIGGISKNDE------LLKTVECFSLNTNKWSKGSPLPISHY----G------GCAIYH 436 (534)
T ss_pred CcCcC--CccceEEEECCEEEEECCcCCCCc------ccceEEEEeCCCCeeeecCCCCcccc----C------ceEEEE
Confidence 55542 234456778999999988432110 1256899999999999874 343221 1 456778
Q ss_pred CCeEEEEEEccccCCCCCCCcEEEEEEeecCCCcceeEEEEeeccCCccccEEEEecCCEEEEEEc------CCeEEEEE
Q 046787 279 DQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQFKIDLRLGLGKMAGLRRNGEMLLVTRY------NEELVSFN 352 (412)
Q Consensus 279 ~g~L~l~~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~g~~ill~~~------~~~l~~yd 352 (412)
+|+|+++++..... .....-.+|..+- ....|...-.++.+... ....+. + +.|++.+. ...+..||
T Consensus 437 ~~~iyv~GG~~~~~--~~~~~~~v~~yd~--~~~~W~~~~~~~~~r~~-~~~~~~-~-~~iyv~GG~~~~~~~~~v~~yd 509 (534)
T PHA03098 437 DGKIYVIGGISYID--NIKVYNIVESYNP--VTNKWTELSSLNFPRIN-ASLCIF-N-NKIYVVGGDKYEYYINEIEVYD 509 (534)
T ss_pred CCEEEEECCccCCC--CCcccceEEEecC--CCCceeeCCCCCccccc-ceEEEE-C-CEEEEEcCCcCCcccceeEEEe
Confidence 99999998764100 0000112555543 24689987644432221 122222 3 45655432 24699999
Q ss_pred CCCCcEEEEE
Q 046787 353 TVNRKMQKLG 362 (412)
Q Consensus 353 ~~t~~~~~v~ 362 (412)
+++++|+.+.
T Consensus 510 ~~~~~W~~~~ 519 (534)
T PHA03098 510 DKTNTWTLFC 519 (534)
T ss_pred CCCCEEEecC
Confidence 9999998874
No 10
>PHA02790 Kelch-like protein; Provisional
Probab=98.91 E-value=1.2e-07 Score=95.11 Aligned_cols=185 Identities=10% Similarity=-0.011 Sum_probs=114.9
Q ss_pred eeEEEEcCcCcceeecCCCCcCCCcceEEEEeeeCCCCCEEEEEEEEEecccccccCCCCCeEEEEECCCCCceecCCCC
Q 046787 121 KSVIVWNPSLESCVRIMFKFTAANFESVHGFGFDPKSVDYKVVRIVVRDHFIIGVRDAPRPVVQVFALKVGSWRNVTTGD 200 (412)
Q Consensus 121 ~~~~V~NP~T~~~~~LP~p~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~vyss~t~~Wr~~~~~~ 200 (412)
..+..+||.+++|..+|+..........+.++ =+|..+..... ...++.|+..+++|..+ +.
T Consensus 287 ~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~-------~~iYviGG~~~---------~~sve~ydp~~n~W~~~--~~ 348 (480)
T PHA02790 287 NNAIAVNYISNNWIPIPPMNSPRLYASGVPAN-------NKLYVVGGLPN---------PTSVERWFHGDAAWVNM--PS 348 (480)
T ss_pred CeEEEEECCCCEEEECCCCCchhhcceEEEEC-------CEEEEECCcCC---------CCceEEEECCCCeEEEC--CC
Confidence 45677899999999999843322122222222 13444432211 11289999999999999 55
Q ss_pred CCceeeecCCCceEECCeEEEEeecCCCccccccccceeEEEEEECCCceEEEecCCCCcccccccccccceeeEEEeCC
Q 046787 201 TSLCRITVKTPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKELNVPDELKTDELAYGREQKLFIGALDQ 280 (412)
Q Consensus 201 ~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g 280 (412)
+|. ......++.++|.||.+++.... ...+..||+.+++|+.++.++... .. ...++++|
T Consensus 349 l~~--~r~~~~~~~~~g~IYviGG~~~~---------~~~ve~ydp~~~~W~~~~~m~~~r---~~------~~~~~~~~ 408 (480)
T PHA02790 349 LLK--PRCNPAVASINNVIYVIGGHSET---------DTTTEYLLPNHDQWQFGPSTYYPH---YK------SCALVFGR 408 (480)
T ss_pred CCC--CCcccEEEEECCEEEEecCcCCC---------CccEEEEeCCCCEEEeCCCCCCcc---cc------ceEEEECC
Confidence 664 22344677899999999986431 145789999999999974433221 11 45678999
Q ss_pred eEEEEEEccccCCCCCCCcEEEEEEeecCCCcceeEEEEeeccCCccccEEEEecCCEEEEEEc------CCeEEEEECC
Q 046787 281 KLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQFKIDLRLGLGKMAGLRRNGEMLLVTRY------NEELVSFNTV 354 (412)
Q Consensus 281 ~L~l~~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~g~~ill~~~------~~~l~~yd~~ 354 (412)
+|++++... ++.-. ....|+....++.+.. ....++. + +.||+.+. ...+..||++
T Consensus 409 ~IYv~GG~~-----------e~ydp----~~~~W~~~~~m~~~r~-~~~~~v~-~-~~IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 409 RLFLVGRNA-----------EFYCE----SSNTWTLIDDPIYPRD-NPELIIV-D-NKLLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred EEEEECCce-----------EEecC----CCCcEeEcCCCCCCcc-ccEEEEE-C-CEEEEECCcCCCcccceEEEEECC
Confidence 999987432 22211 2468998765543222 1222222 3 56666532 1358899999
Q ss_pred CCcEEEE
Q 046787 355 NRKMQKL 361 (412)
Q Consensus 355 t~~~~~v 361 (412)
+++|+..
T Consensus 471 ~~~W~~~ 477 (480)
T PHA02790 471 TYSWNIW 477 (480)
T ss_pred CCeEEec
Confidence 9999754
No 11
>PLN02153 epithiospecifier protein
Probab=98.88 E-value=5.1e-07 Score=86.77 Aligned_cols=234 Identities=11% Similarity=0.054 Sum_probs=124.4
Q ss_pred EeeccEEEEeeeccC---CCceeEEEEcCcCcceeecCCCC-cCCC---cceEEEEeeeCCCCCEEEEEEEEEecccccc
Q 046787 103 GICYGLVCLLDYHQK---GLSKSVIVWNPSLESCVRIMFKF-TAAN---FESVHGFGFDPKSVDYKVVRIVVRDHFIIGV 175 (412)
Q Consensus 103 ~s~~GLlll~~~~~~---~~~~~~~V~NP~T~~~~~LP~p~-~~~~---~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~ 175 (412)
...++.|.+...... .....++++||.+++|..+|+.. .... ...++.++ =+|..+.-...
T Consensus 29 ~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~-------~~iyv~GG~~~----- 96 (341)
T PLN02153 29 AVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVG-------TKLYIFGGRDE----- 96 (341)
T ss_pred EEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEEC-------CEEEEECCCCC-----
Confidence 344555555433210 11247899999999999988621 1110 11122222 13444432111
Q ss_pred cCCCCCe-EEEEECCCCCceecCCC---CCCceeeecCCCceEECCeEEEEeecCCCccccccccceeEEEEEECCCceE
Q 046787 176 RDAPRPV-VQVFALKVGSWRNVTTG---DTSLCRITVKTPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVF 251 (412)
Q Consensus 176 ~~~~~~~-~~vyss~t~~Wr~~~~~---~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~ 251 (412)
..... +++|++.++.|..++.. ..|. .......+..+|+||.+++....... .....-..+.+||+.+.+|
T Consensus 97 --~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~--~R~~~~~~~~~~~iyv~GG~~~~~~~-~~~~~~~~v~~yd~~~~~W 171 (341)
T PLN02153 97 --KREFSDFYSYDTVKNEWTFLTKLDEEGGPE--ARTFHSMASDENHVYVFGGVSKGGLM-KTPERFRTIEAYNIADGKW 171 (341)
T ss_pred --CCccCcEEEEECCCCEEEEeccCCCCCCCC--CceeeEEEEECCEEEEECCccCCCcc-CCCcccceEEEEECCCCeE
Confidence 11123 99999999999988321 0132 12334567789999999886421000 0000113588999999999
Q ss_pred EEecCCCCcccccccccccceeeEEEeCCeEEEEEEccccC---CCCCCCcEEEEEEeecCCCcceeEEEEee-ccCCc-
Q 046787 252 KELNVPDELKTDELAYGREQKLFIGALDQKLALMHYYTQWY---NSPSYDGCCIWMMKEYGLGESWTKQFKID-LRLGL- 326 (412)
Q Consensus 252 ~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~---~~~~~~~l~iW~l~~~~~~~~W~~~~~i~-~~~~~- 326 (412)
..++.+......... ..+++.+|+|+++....... .......-+|+..+- ....|+++.... .+...
T Consensus 172 ~~l~~~~~~~~~r~~------~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~--~~~~W~~~~~~g~~P~~r~ 243 (341)
T PLN02153 172 VQLPDPGENFEKRGG------AGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDP--ASGKWTEVETTGAKPSARS 243 (341)
T ss_pred eeCCCCCCCCCCCCc------ceEEEECCeEEEEeccccccccCCccceecCceEEEEc--CCCcEEeccccCCCCCCcc
Confidence 987643211011111 45677899999987642100 000011124555553 246799876432 12111
Q ss_pred cccEEEEecCCEEEEEEcC---------------CeEEEEECCCCcEEEEEE
Q 046787 327 GKMAGLRRNGEMLLVTRYN---------------EELVSFNTVNRKMQKLGI 363 (412)
Q Consensus 327 ~~p~~~~~~g~~ill~~~~---------------~~l~~yd~~t~~~~~v~~ 363 (412)
.....+. ++.||+.... ..++.||+++++|+++.-
T Consensus 244 ~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~ 293 (341)
T PLN02153 244 VFAHAVV--GKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGE 293 (341)
T ss_pred eeeeEEE--CCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccC
Confidence 1112222 3456554221 268999999999998853
No 12
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.78 E-value=1.4e-09 Score=72.03 Aligned_cols=42 Identities=21% Similarity=0.528 Sum_probs=36.2
Q ss_pred CCCCcHHHHHHHHccCCcccceeeeecchhhhhhhcCccccc
Q 046787 2 SDYVPEEVVAQILFRLPAKSVSEFRCVCKSWCALINDPTFIS 43 (412)
Q Consensus 2 ~~~LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~p~F~~ 43 (412)
++.||+|++.+||+.||++++.++++|||+|+.++.++.+-+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~ 42 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWR 42 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhh
Confidence 468999999999999999999999999999999998885543
No 13
>PLN02193 nitrile-specifier protein
Probab=98.78 E-value=5.4e-07 Score=90.25 Aligned_cols=204 Identities=9% Similarity=0.040 Sum_probs=119.3
Q ss_pred eeEEEEcCcCcceeecCCCCcCC----CcceEEEEeeeCCCCCEEEEEEEEEecccccccCCCCCe-EEEEECCCCCcee
Q 046787 121 KSVIVWNPSLESCVRIMFKFTAA----NFESVHGFGFDPKSVDYKVVRIVVRDHFIIGVRDAPRPV-VQVFALKVGSWRN 195 (412)
Q Consensus 121 ~~~~V~NP~T~~~~~LP~p~~~~----~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~-~~vyss~t~~Wr~ 195 (412)
..+.++||.+++|..+|+....+ ....++.++ . ++..+.-... ..... +++|++.+++|+.
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~--~-----~lYvfGG~~~-------~~~~ndv~~yD~~t~~W~~ 258 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIG--S-----TLYVFGGRDA-------SRQYNGFYSFDTTTNEWKL 258 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEEC--C-----EEEEECCCCC-------CCCCccEEEEECCCCEEEE
Confidence 46889999999999887521111 011112221 1 3433421111 11123 9999999999999
Q ss_pred cCC-CCCCceeeecCCCceEECCeEEEEeecCCCccccccccceeEEEEEECCCceEEEecCCCCcccccccccccceee
Q 046787 196 VTT-GDTSLCRITVKTPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKELNVPDELKTDELAYGREQKLF 274 (412)
Q Consensus 196 ~~~-~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~~~~~ 274 (412)
+.. ...|. .......+.+++.||.+++..... ....+.+||+.+.+|+.++.|......... ..
T Consensus 259 l~~~~~~P~--~R~~h~~~~~~~~iYv~GG~~~~~-------~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~------~~ 323 (470)
T PLN02193 259 LTPVEEGPT--PRSFHSMAADEENVYVFGGVSATA-------RLKTLDSYNIVDKKWFHCSTPGDSFSIRGG------AG 323 (470)
T ss_pred cCcCCCCCC--CccceEEEEECCEEEEECCCCCCC-------CcceEEEEECCCCEEEeCCCCCCCCCCCCC------cE
Confidence 843 11132 123345567899999998764311 114588999999999988765322111111 45
Q ss_pred EEEeCCeEEEEEEccccCCCCCCCcEEEEEEeecCCCcceeEEEEeec-cCC-ccccEEEEecCCEEEEEEc-C------
Q 046787 275 IGALDQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQFKIDL-RLG-LGKMAGLRRNGEMLLVTRY-N------ 345 (412)
Q Consensus 275 l~~~~g~L~l~~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~-~~~p~~~~~~g~~ill~~~-~------ 345 (412)
+++.+|+++++..... ...-++|+.+- ...+|.+...+.. +.. ......+. + +.|++... .
T Consensus 324 ~~~~~gkiyviGG~~g------~~~~dv~~yD~--~t~~W~~~~~~g~~P~~R~~~~~~~~-~-~~iyv~GG~~~~~~~~ 393 (470)
T PLN02193 324 LEVVQGKVWVVYGFNG------CEVDDVHYYDP--VQDKWTQVETFGVRPSERSVFASAAV-G-KHIVIFGGEIAMDPLA 393 (470)
T ss_pred EEEECCcEEEEECCCC------CccCceEEEEC--CCCEEEEeccCCCCCCCcceeEEEEE-C-CEEEEECCccCCcccc
Confidence 6778999999987541 12346777774 2467998765521 111 11222222 3 45555422 1
Q ss_pred --------CeEEEEECCCCcEEEEEE
Q 046787 346 --------EELVSFNTVNRKMQKLGI 363 (412)
Q Consensus 346 --------~~l~~yd~~t~~~~~v~~ 363 (412)
..++.||+.+++|+++..
T Consensus 394 ~~~~~~~~ndv~~~D~~t~~W~~~~~ 419 (470)
T PLN02193 394 HVGPGQLTDGTFALDTETLQWERLDK 419 (470)
T ss_pred ccCccceeccEEEEEcCcCEEEEccc
Confidence 248999999999998864
No 14
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.67 E-value=5.4e-06 Score=79.88 Aligned_cols=230 Identities=15% Similarity=0.024 Sum_probs=123.4
Q ss_pred eeccEEEEeeeccCCCceeEEEEc--CcCcceeecCCCC-cCCCcceEEEEeeeCCCCCEEEEEEEEEecccccccCCC-
Q 046787 104 ICYGLVCLLDYHQKGLSKSVIVWN--PSLESCVRIMFKF-TAANFESVHGFGFDPKSVDYKVVRIVVRDHFIIGVRDAP- 179 (412)
Q Consensus 104 s~~GLlll~~~~~~~~~~~~~V~N--P~T~~~~~LP~p~-~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~- 179 (412)
..++-|.+..... ...+.+.+ |.+++|..+|+.. ..+....++.++ =+|..+.-.... +.....
T Consensus 15 ~~~~~vyv~GG~~---~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~-------~~iYv~GG~~~~--~~~~~~~ 82 (346)
T TIGR03547 15 IIGDKVYVGLGSA---GTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAID-------GKLYVFGGIGKA--NSEGSPQ 82 (346)
T ss_pred EECCEEEEEcccc---CCeeEEEECCCCCCCceECCCCCCCCcccceEEEEC-------CEEEEEeCCCCC--CCCCcce
Confidence 4455555543321 24566666 4778999999832 222122222222 144444322110 000000
Q ss_pred CCe-EEEEECCCCCceecCCCCCCceeeecCCCce-EECCeEEEEeecCCCcc-cc------------------------
Q 046787 180 RPV-VQVFALKVGSWRNVTTGDTSLCRITVKTPQA-YVNGTLHWVGYDTESHH-VA------------------------ 232 (412)
Q Consensus 180 ~~~-~~vyss~t~~Wr~~~~~~~p~~~~~~~~~~v-~~~G~lywl~~~~~~~~-~~------------------------ 232 (412)
... ++.|+..+++|+.++. ..|. ......++ .++|+||.+++...... ..
T Consensus 83 ~~~~v~~Yd~~~~~W~~~~~-~~p~--~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (346)
T TIGR03547 83 VFDDVYRYDPKKNSWQKLDT-RSPV--GLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQ 159 (346)
T ss_pred ecccEEEEECCCCEEecCCC-CCCC--cccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCC
Confidence 123 9999999999999831 2232 11122233 58999999987542100 00
Q ss_pred --ccccceeEEEEEECCCceEEEec-CCCCcccccccccccceeeEEEeCCeEEEEEEccccCCCCCCCcEEEEEEeecC
Q 046787 233 --QGIQRRLVLLAFDLREEVFKELN-VPDELKTDELAYGREQKLFIGALDQKLALMHYYTQWYNSPSYDGCCIWMMKEYG 309 (412)
Q Consensus 233 --~~~~~~~~il~fD~~~e~~~~i~-~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~~~~l~iW~l~~~~ 309 (412)
........+.+||+.+++|+.++ +|.... .. ..+++.+|+|+++..... ......++|..+-..
T Consensus 160 ~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r---~~------~~~~~~~~~iyv~GG~~~----~~~~~~~~~~y~~~~ 226 (346)
T TIGR03547 160 PPEDYFWNKNVLSYDPSTNQWRNLGENPFLGT---AG------SAIVHKGNKLLLINGEIK----PGLRTAEVKQYLFTG 226 (346)
T ss_pred ChhHcCccceEEEEECCCCceeECccCCCCcC---CC------ceEEEECCEEEEEeeeeC----CCccchheEEEEecC
Confidence 00001256999999999999983 453211 11 457788999999988641 112334566655211
Q ss_pred CCcceeEEEEeeccCC-cc----ccEEEEecCCEEEEEEcC-----------------------CeEEEEECCCCcEEEE
Q 046787 310 LGESWTKQFKIDLRLG-LG----KMAGLRRNGEMLLVTRYN-----------------------EELVSFNTVNRKMQKL 361 (412)
Q Consensus 310 ~~~~W~~~~~i~~~~~-~~----~p~~~~~~g~~ill~~~~-----------------------~~l~~yd~~t~~~~~v 361 (412)
....|.....++.+.. .. ...++..+ +.|++.... ..+.+||+++++|+.+
T Consensus 227 ~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~-~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~ 305 (346)
T TIGR03547 227 GKLEWNKLPPLPPPKSSSQEGLAGAFAGISN-GVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKV 305 (346)
T ss_pred CCceeeecCCCCCCCCCccccccEEeeeEEC-CEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCccccc
Confidence 2458998776653221 11 11112223 566655321 1467999999999888
Q ss_pred E
Q 046787 362 G 362 (412)
Q Consensus 362 ~ 362 (412)
.
T Consensus 306 ~ 306 (346)
T TIGR03547 306 G 306 (346)
T ss_pred C
Confidence 4
No 15
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.64 E-value=3.5e-06 Score=80.36 Aligned_cols=152 Identities=18% Similarity=0.202 Sum_probs=94.9
Q ss_pred EEEEECCCCCc----eecCCCCCCceeeecCCCceEECCeEEEEeecCCCccccccccceeEEEEEECCCceEEEec-CC
Q 046787 183 VQVFALKVGSW----RNVTTGDTSLCRITVKTPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKELN-VP 257 (412)
Q Consensus 183 ~~vyss~t~~W----r~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~-~P 257 (412)
++.|++.++.| +.+ +.+|.. .....++.++|.||.+++..... ....+.+||+.+++|+.++ +|
T Consensus 90 v~~~d~~~~~w~~~~~~~--~~lp~~--~~~~~~~~~~~~iYv~GG~~~~~-------~~~~v~~yd~~~~~W~~~~~~p 158 (323)
T TIGR03548 90 VYRITLDESKEELICETI--GNLPFT--FENGSACYKDGTLYVGGGNRNGK-------PSNKSYLFNLETQEWFELPDFP 158 (323)
T ss_pred EEEEEEcCCceeeeeeEc--CCCCcC--ccCceEEEECCEEEEEeCcCCCc-------cCceEEEEcCCCCCeeECCCCC
Confidence 89999999988 555 455542 23345677899999998753211 1256899999999999985 56
Q ss_pred CCcccccccccccceeeEEEeCCeEEEEEEccccCCCCCCCcEEEEEEeecCCCcceeEEEEeec---cCCccccEEEEe
Q 046787 258 DELKTDELAYGREQKLFIGALDQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQFKIDL---RLGLGKMAGLRR 334 (412)
Q Consensus 258 ~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~---~~~~~~p~~~~~ 334 (412)
.... .. ...++.+++|++++... .....++|..+- ...+|.+...+.. +.....-.++..
T Consensus 159 ~~~r---~~------~~~~~~~~~iYv~GG~~------~~~~~~~~~yd~--~~~~W~~~~~~~~~~~p~~~~~~~~~~~ 221 (323)
T TIGR03548 159 GEPR---VQ------PVCVKLQNELYVFGGGS------NIAYTDGYKYSP--KKNQWQKVADPTTDSEPISLLGAASIKI 221 (323)
T ss_pred CCCC---Cc------ceEEEECCEEEEEcCCC------CccccceEEEec--CCCeeEECCCCCCCCCceeccceeEEEE
Confidence 4221 11 44577899999998764 112235565553 2467988654321 111111112222
Q ss_pred cCCEEEEEEc-C-------------------------------------CeEEEEECCCCcEEEEE
Q 046787 335 NGEMLLVTRY-N-------------------------------------EELVSFNTVNRKMQKLG 362 (412)
Q Consensus 335 ~g~~ill~~~-~-------------------------------------~~l~~yd~~t~~~~~v~ 362 (412)
.++.|++... + ..+..||+.+++|+.+.
T Consensus 222 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~ 287 (323)
T TIGR03548 222 NESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIG 287 (323)
T ss_pred CCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcc
Confidence 2355655421 1 35999999999999885
No 16
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.63 E-value=7.9e-06 Score=79.62 Aligned_cols=253 Identities=15% Similarity=-0.008 Sum_probs=131.7
Q ss_pred EEeeccEEEEeeeccCCCceeEEEEcCc--CcceeecCC-CCcCCCcceEEEEeeeCCCCCEEEEEEEEEecccccccCC
Q 046787 102 IGICYGLVCLLDYHQKGLSKSVIVWNPS--LESCVRIMF-KFTAANFESVHGFGFDPKSVDYKVVRIVVRDHFIIGVRDA 178 (412)
Q Consensus 102 ~~s~~GLlll~~~~~~~~~~~~~V~NP~--T~~~~~LP~-p~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~ 178 (412)
.+..++-|.+..... ...+.++++. +++|..+|+ |........++.++ + +|..+.-..... ....
T Consensus 34 ~~~~~~~iyv~gG~~---~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~-----~--~IYV~GG~~~~~--~~~~ 101 (376)
T PRK14131 34 GAIDNNTVYVGLGSA---GTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFID-----G--KLYVFGGIGKTN--SEGS 101 (376)
T ss_pred EEEECCEEEEEeCCC---CCeEEEEECCCCCCCeEECCcCCCCCcccceEEEEC-----C--EEEEEcCCCCCC--CCCc
Confidence 455666666544321 2446666664 578999887 32221122222222 1 233332111000 0000
Q ss_pred -CCCe-EEEEECCCCCceecCCCCCCceeeecCCCceE-ECCeEEEEeecCCCcc-cc----------------------
Q 046787 179 -PRPV-VQVFALKVGSWRNVTTGDTSLCRITVKTPQAY-VNGTLHWVGYDTESHH-VA---------------------- 232 (412)
Q Consensus 179 -~~~~-~~vyss~t~~Wr~~~~~~~p~~~~~~~~~~v~-~~G~lywl~~~~~~~~-~~---------------------- 232 (412)
.... +++|+..+++|+.+.. ..|.. .....++. .+|.||.+++...... ..
T Consensus 102 ~~~~~~v~~YD~~~n~W~~~~~-~~p~~--~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~ 178 (376)
T PRK14131 102 PQVFDDVYKYDPKTNSWQKLDT-RSPVG--LAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYF 178 (376)
T ss_pred eeEcccEEEEeCCCCEEEeCCC-CCCCc--ccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHh
Confidence 0123 9999999999999832 22331 12223343 7999999998642100 00
Q ss_pred ----ccccceeEEEEEECCCceEEEec-CCCCcccccccccccceeeEEEeCCeEEEEEEccccCCCCCCCcEEEEEEee
Q 046787 233 ----QGIQRRLVLLAFDLREEVFKELN-VPDELKTDELAYGREQKLFIGALDQKLALMHYYTQWYNSPSYDGCCIWMMKE 307 (412)
Q Consensus 233 ----~~~~~~~~il~fD~~~e~~~~i~-~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~~~~l~iW~l~~ 307 (412)
........+..||+.+++|+.+. +|.... .. ..++..+++|++++.... ......++|..+-
T Consensus 179 ~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~---~~------~a~v~~~~~iYv~GG~~~----~~~~~~~~~~~~~ 245 (376)
T PRK14131 179 DKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGT---AG------SAVVIKGNKLWLINGEIK----PGLRTDAVKQGKF 245 (376)
T ss_pred cCChhhcCcCceEEEEECCCCeeeECCcCCCCCC---Cc------ceEEEECCEEEEEeeeEC----CCcCChhheEEEe
Confidence 00001256999999999999874 443211 11 456778999999998641 1134566777652
Q ss_pred cCCCcceeEEEEeeccCC--cc----ccEEEEecCCEEEEEEcC-----------------------CeEEEEECCCCcE
Q 046787 308 YGLGESWTKQFKIDLRLG--LG----KMAGLRRNGEMLLVTRYN-----------------------EELVSFNTVNRKM 358 (412)
Q Consensus 308 ~~~~~~W~~~~~i~~~~~--~~----~p~~~~~~g~~ill~~~~-----------------------~~l~~yd~~t~~~ 358 (412)
......|.++..++.+.. .. ...+...+ +.||+.... ..+..||+++++|
T Consensus 246 ~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W 324 (376)
T PRK14131 246 TGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSN-GVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKW 324 (376)
T ss_pred cCCCcceeecCCCCCCCcCCcCCccceEeceeEC-CEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcc
Confidence 223468998876653221 11 11112223 466655321 0245799999999
Q ss_pred EEEEE-ecccceEEEeeeeecceecc
Q 046787 359 QKLGI-YGETWSFFLDTYVESLVLMQ 383 (412)
Q Consensus 359 ~~v~~-~~~~~~~~~~~y~~slv~~~ 383 (412)
+.+.- +.......+...-..|+-+.
T Consensus 325 ~~~~~lp~~r~~~~av~~~~~iyv~G 350 (376)
T PRK14131 325 QKVGELPQGLAYGVSVSWNNGVLLIG 350 (376)
T ss_pred cccCcCCCCccceEEEEeCCEEEEEc
Confidence 98743 21112233444445555444
No 17
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.57 E-value=1.1e-08 Score=65.48 Aligned_cols=39 Identities=33% Similarity=0.692 Sum_probs=36.7
Q ss_pred CcHHHHHHHHccCCcccceeeeecchhhhhhhcCccccc
Q 046787 5 VPEEVVAQILFRLPAKSVSEFRCVCKSWCALINDPTFIS 43 (412)
Q Consensus 5 LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~p~F~~ 43 (412)
||+|++.+||.+|+.+++.++++|||+|+.++.++.|..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999988754
No 18
>PLN02193 nitrile-specifier protein
Probab=98.50 E-value=1.8e-05 Score=79.31 Aligned_cols=159 Identities=14% Similarity=0.136 Sum_probs=93.1
Q ss_pred EEEEECCCCCceecCC-CCCCceeeecCCCceEECCeEEEEeecCCCccccccccceeEEEEEECCCceEEEecCCCCcc
Q 046787 183 VQVFALKVGSWRNVTT-GDTSLCRITVKTPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKELNVPDELK 261 (412)
Q Consensus 183 ~~vyss~t~~Wr~~~~-~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~ 261 (412)
+++|+..+++|..+.. ...|. ........+.+++.||.+++..... ....+.+||+.+.+|+.+.......
T Consensus 195 v~~yD~~~~~W~~~~~~g~~P~-~~~~~~~~v~~~~~lYvfGG~~~~~-------~~ndv~~yD~~t~~W~~l~~~~~~P 266 (470)
T PLN02193 195 LYVFDLETRTWSISPATGDVPH-LSCLGVRMVSIGSTLYVFGGRDASR-------QYNGFYSFDTTTNEWKLLTPVEEGP 266 (470)
T ss_pred EEEEECCCCEEEeCCCCCCCCC-CcccceEEEEECCEEEEECCCCCCC-------CCccEEEEECCCCEEEEcCcCCCCC
Confidence 8999999999998732 12332 1112334677899999998754311 1146889999999999974321000
Q ss_pred cccccccccceeeEEEeCCeEEEEEEccccCCCCCCCcEEEEEEeecCCCcceeEEEEee-ccC-CccccEEEEecCCEE
Q 046787 262 TDELAYGREQKLFIGALDQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQFKID-LRL-GLGKMAGLRRNGEML 339 (412)
Q Consensus 262 ~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~-~~~-~~~~p~~~~~~g~~i 339 (412)
..... ..++..+++|+++..... ....-++|..+- ...+|....... .+. .....+.+. ++.++
T Consensus 267 ~~R~~------h~~~~~~~~iYv~GG~~~-----~~~~~~~~~yd~--~t~~W~~~~~~~~~~~~R~~~~~~~~-~gkiy 332 (470)
T PLN02193 267 TPRSF------HSMAADEENVYVFGGVSA-----TARLKTLDSYNI--VDKKWFHCSTPGDSFSIRGGAGLEVV-QGKVW 332 (470)
T ss_pred CCccc------eEEEEECCEEEEECCCCC-----CCCcceEEEEEC--CCCEEEeCCCCCCCCCCCCCcEEEEE-CCcEE
Confidence 01111 456778999999987641 112234555553 246798653211 011 111223333 33333
Q ss_pred EEEEc----CCeEEEEECCCCcEEEEEE
Q 046787 340 LVTRY----NEELVSFNTVNRKMQKLGI 363 (412)
Q Consensus 340 ll~~~----~~~l~~yd~~t~~~~~v~~ 363 (412)
++... ...+..||+++++|+++..
T Consensus 333 viGG~~g~~~~dv~~yD~~t~~W~~~~~ 360 (470)
T PLN02193 333 VVYGFNGCEVDDVHYYDPVQDKWTQVET 360 (470)
T ss_pred EEECCCCCccCceEEEECCCCEEEEecc
Confidence 33321 2459999999999999854
No 19
>PHA02790 Kelch-like protein; Provisional
Probab=98.49 E-value=4.5e-06 Score=83.92 Aligned_cols=164 Identities=7% Similarity=-0.019 Sum_probs=105.1
Q ss_pred EEEEECCCCCceecCCCCCCceeeecCCCceEECCeEEEEeecCCCccccccccceeEEEEEECCCceEEEe-cCCCCcc
Q 046787 183 VQVFALKVGSWRNVTTGDTSLCRITVKTPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKEL-NVPDELK 261 (412)
Q Consensus 183 ~~vyss~t~~Wr~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i-~~P~~~~ 261 (412)
++.|++.+++|..+ +.++. .......+.++|.+|.+++.... ..+..||+.+++|..+ ++|....
T Consensus 289 v~~Ydp~~~~W~~~--~~m~~--~r~~~~~v~~~~~iYviGG~~~~----------~sve~ydp~~n~W~~~~~l~~~r~ 354 (480)
T PHA02790 289 AIAVNYISNNWIPI--PPMNS--PRLYASGVPANNKLYVVGGLPNP----------TSVERWFHGDAAWVNMPSLLKPRC 354 (480)
T ss_pred EEEEECCCCEEEEC--CCCCc--hhhcceEEEECCEEEEECCcCCC----------CceEEEECCCCeEEECCCCCCCCc
Confidence 89999999999999 45554 22334567899999999986431 3578999999999987 4443331
Q ss_pred cccccccccceeeEEEeCCeEEEEEEccccCCCCCCCcEEEEEEeecCCCcceeEEEEeeccCCccccEEEEecCCEEEE
Q 046787 262 TDELAYGREQKLFIGALDQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQFKIDLRLGLGKMAGLRRNGEMLLV 341 (412)
Q Consensus 262 ~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~g~~ill 341 (412)
. ...++++|+||++++... .....+.+..+ ...|.....++.+... ..++. -++.|++
T Consensus 355 ----~------~~~~~~~g~IYviGG~~~-----~~~~ve~ydp~----~~~W~~~~~m~~~r~~--~~~~~-~~~~IYv 412 (480)
T PHA02790 355 ----N------PAVASINNVIYVIGGHSE-----TDTTTEYLLPN----HDQWQFGPSTYYPHYK--SCALV-FGRRLFL 412 (480)
T ss_pred ----c------cEEEEECCEEEEecCcCC-----CCccEEEEeCC----CCEEEeCCCCCCcccc--ceEEE-ECCEEEE
Confidence 1 567889999999988641 12334444322 4679986554432221 12222 2367777
Q ss_pred EEcCCeEEEEECCCCcEEEEEE-ecccceEEEeeeeecceeccc
Q 046787 342 TRYNEELVSFNTVNRKMQKLGI-YGETWSFFLDTYVESLVLMQR 384 (412)
Q Consensus 342 ~~~~~~l~~yd~~t~~~~~v~~-~~~~~~~~~~~y~~slv~~~~ 384 (412)
.+. ....||+++++|+.+.- ........+..+...+.-++.
T Consensus 413 ~GG--~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG 454 (480)
T PHA02790 413 VGR--NAEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGG 454 (480)
T ss_pred ECC--ceEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECC
Confidence 643 47789999999998852 211233445555555555543
No 20
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.49 E-value=2.1e-08 Score=66.68 Aligned_cols=42 Identities=26% Similarity=0.547 Sum_probs=35.5
Q ss_pred CCCcHHHHHHHHccCCcccceeeeecchhhhhhhcCcccccc
Q 046787 3 DYVPEEVVAQILFRLPAKSVSEFRCVCKSWCALINDPTFISN 44 (412)
Q Consensus 3 ~~LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~p~F~~~ 44 (412)
..||+|++.+||.+||.+++++++.|||+|++++.++.+...
T Consensus 4 ~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~ 45 (48)
T PF00646_consen 4 SDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKK 45 (48)
T ss_dssp HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHH
T ss_pred HHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHH
Confidence 469999999999999999999999999999999999877543
No 21
>PLN02153 epithiospecifier protein
Probab=98.45 E-value=6.5e-05 Score=72.24 Aligned_cols=200 Identities=9% Similarity=0.002 Sum_probs=106.0
Q ss_pred EEeeccEEEEeeecc-CCCceeEEEEcCcCcceeecCCCCc-C-CCcceEEEEeeeCCCCCEEEEEEEEEecccccccCC
Q 046787 102 IGICYGLVCLLDYHQ-KGLSKSVIVWNPSLESCVRIMFKFT-A-ANFESVHGFGFDPKSVDYKVVRIVVRDHFIIGVRDA 178 (412)
Q Consensus 102 ~~s~~GLlll~~~~~-~~~~~~~~V~NP~T~~~~~LP~p~~-~-~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~ 178 (412)
+.+.+|.|.+..... ......+.++||.|++|..+++... . .......+.... ++ |+..+.-...... ....
T Consensus 81 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~---~~-~iyv~GG~~~~~~-~~~~ 155 (341)
T PLN02153 81 MVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASD---EN-HVYVFGGVSKGGL-MKTP 155 (341)
T ss_pred EEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEE---CC-EEEEECCccCCCc-cCCC
Confidence 456667766554421 1123578899999999999875211 0 000111111111 11 3444422111000 0000
Q ss_pred CCCe-EEEEECCCCCceecCCCCCCceeeecCCCceEECCeEEEEeecCCCc--cccccccceeEEEEEECCCceEEEec
Q 046787 179 PRPV-VQVFALKVGSWRNVTTGDTSLCRITVKTPQAYVNGTLHWVGYDTESH--HVAQGIQRRLVLLAFDLREEVFKELN 255 (412)
Q Consensus 179 ~~~~-~~vyss~t~~Wr~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~--~~~~~~~~~~~il~fD~~~e~~~~i~ 255 (412)
.... +++|+..+++|..+.....+. ........+.++|++|.+++..... .+... .....+.+||+.+.+|+.++
T Consensus 156 ~~~~~v~~yd~~~~~W~~l~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~-~~~~~v~~yd~~~~~W~~~~ 233 (341)
T PLN02153 156 ERFRTIEAYNIADGKWVQLPDPGENF-EKRGGAGFAVVQGKIWVVYGFATSILPGGKSD-YESNAVQFFDPASGKWTEVE 233 (341)
T ss_pred cccceEEEEECCCCeEeeCCCCCCCC-CCCCcceEEEECCeEEEEeccccccccCCccc-eecCceEEEEcCCCcEEecc
Confidence 1123 899999999999984211111 1223334567899999987643110 00000 01246899999999999985
Q ss_pred ----CCCCcccccccccccceeeEEEeCCeEEEEEEccccC---CCC-CCCcEEEEEEeecCCCcceeEEEEe
Q 046787 256 ----VPDELKTDELAYGREQKLFIGALDQKLALMHYYTQWY---NSP-SYDGCCIWMMKEYGLGESWTKQFKI 320 (412)
Q Consensus 256 ----~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~---~~~-~~~~l~iW~l~~~~~~~~W~~~~~i 320 (412)
+|.... . ...++.+++|++++...... +.. ....-++|.++- ....|+++...
T Consensus 234 ~~g~~P~~r~----~------~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~--~~~~W~~~~~~ 294 (341)
T PLN02153 234 TTGAKPSARS----V------FAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDT--ETLVWEKLGEC 294 (341)
T ss_pred ccCCCCCCcc----e------eeeEEECCEEEEECcccCCccccccccccccccEEEEEc--CccEEEeccCC
Confidence 243221 1 45677899999998863100 000 111237899885 25689987543
No 22
>PHA03098 kelch-like protein; Provisional
Probab=98.39 E-value=1.7e-05 Score=81.04 Aligned_cols=197 Identities=12% Similarity=0.006 Sum_probs=115.7
Q ss_pred eEEEEcCcCcceeecCCCCcCCCcceEEEEeeeCCCCCEEEEEEEEEecccccccCCCCCe-EEEEECCCCCceecCCCC
Q 046787 122 SVIVWNPSLESCVRIMFKFTAANFESVHGFGFDPKSVDYKVVRIVVRDHFIIGVRDAPRPV-VQVFALKVGSWRNVTTGD 200 (412)
Q Consensus 122 ~~~V~NP~T~~~~~LP~p~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~-~~vyss~t~~Wr~~~~~~ 200 (412)
.+.-+|+.+++|..++...... ...++..+ -+++.+..... ...... +..|+..+++|..+ +.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------~~lyv~GG~~~------~~~~~~~v~~yd~~~~~W~~~--~~ 328 (534)
T PHA03098 265 NYITNYSPLSEINTIIDIHYVY-CFGSVVLN-------NVIYFIGGMNK------NNLSVNSVVSYDTKTKSWNKV--PE 328 (534)
T ss_pred eeeecchhhhhcccccCccccc-cceEEEEC-------CEEEEECCCcC------CCCeeccEEEEeCCCCeeeEC--CC
Confidence 4445688899998887632111 11222211 13444432111 001122 89999999999988 55
Q ss_pred CCceeeecCCCceEECCeEEEEeecCCCccccccccceeEEEEEECCCceEEEe-cCCCCcccccccccccceeeEEEeC
Q 046787 201 TSLCRITVKTPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKEL-NVPDELKTDELAYGREQKLFIGALD 279 (412)
Q Consensus 201 ~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i-~~P~~~~~~~~~~~~~~~~~l~~~~ 279 (412)
+|.. ......+.++|.+|.+++..... ....+..||+.+.+|+.+ ++|.... . ...+..+
T Consensus 329 ~~~~--R~~~~~~~~~~~lyv~GG~~~~~-------~~~~v~~yd~~~~~W~~~~~lp~~r~----~------~~~~~~~ 389 (534)
T PHA03098 329 LIYP--RKNPGVTVFNNRIYVIGGIYNSI-------SLNTVESWKPGESKWREEPPLIFPRY----N------PCVVNVN 389 (534)
T ss_pred CCcc--cccceEEEECCEEEEEeCCCCCE-------ecceEEEEcCCCCceeeCCCcCcCCc----c------ceEEEEC
Confidence 5542 23456778999999999865311 124688999999999987 3443321 1 4567889
Q ss_pred CeEEEEEEccccCCCCCCCcEEEEEEeecCCCcceeEEEEeeccCCccccEEEEecCCEEEEEEc---------CCeEEE
Q 046787 280 QKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQFKIDLRLGLGKMAGLRRNGEMLLVTRY---------NEELVS 350 (412)
Q Consensus 280 g~L~l~~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~g~~ill~~~---------~~~l~~ 350 (412)
|+|+++++.... ....-.++..+- ....|.....++.+.. ..... .. ++.|++.+. -..+..
T Consensus 390 ~~iYv~GG~~~~----~~~~~~v~~yd~--~t~~W~~~~~~p~~r~-~~~~~-~~-~~~iyv~GG~~~~~~~~~~~~v~~ 460 (534)
T PHA03098 390 NLIYVIGGISKN----DELLKTVECFSL--NTNKWSKGSPLPISHY-GGCAI-YH-DGKIYVIGGISYIDNIKVYNIVES 460 (534)
T ss_pred CEEEEECCcCCC----CcccceEEEEeC--CCCeeeecCCCCcccc-CceEE-EE-CCEEEEECCccCCCCCcccceEEE
Confidence 999999885310 111123444442 2367998664442221 12222 22 356666532 123899
Q ss_pred EECCCCcEEEEE
Q 046787 351 FNTVNRKMQKLG 362 (412)
Q Consensus 351 yd~~t~~~~~v~ 362 (412)
||+++++|+.+.
T Consensus 461 yd~~~~~W~~~~ 472 (534)
T PHA03098 461 YNPVTNKWTELS 472 (534)
T ss_pred ecCCCCceeeCC
Confidence 999999999884
No 23
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.22 E-value=0.00023 Score=69.41 Aligned_cols=96 Identities=14% Similarity=0.154 Sum_probs=59.6
Q ss_pred EEEEECCCCCceecCCCCCCceeeecCCCceEECCeEEEEeecCCCccccccccceeEEEEEECCCceEEEe-cCCCCcc
Q 046787 183 VQVFALKVGSWRNVTTGDTSLCRITVKTPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKEL-NVPDELK 261 (412)
Q Consensus 183 ~~vyss~t~~Wr~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i-~~P~~~~ 261 (412)
+++|+..++.|... ..+|.. .......+.+++.||.+++...... .........||+++.+|+.+ ++|....
T Consensus 191 v~~YD~~t~~W~~~--~~~p~~-~~~~~a~v~~~~~iYv~GG~~~~~~----~~~~~~~~~~~~~~~~W~~~~~~p~~~~ 263 (376)
T PRK14131 191 VLSYDPSTNQWKNA--GESPFL-GTAGSAVVIKGNKLWLINGEIKPGL----RTDAVKQGKFTGNNLKWQKLPDLPPAPG 263 (376)
T ss_pred EEEEECCCCeeeEC--CcCCCC-CCCcceEEEECCEEEEEeeeECCCc----CChhheEEEecCCCcceeecCCCCCCCc
Confidence 99999999999998 445541 2233456778999999997532100 00113455678899999987 4554321
Q ss_pred c--ccccccccceeeEEEeCCeEEEEEEcc
Q 046787 262 T--DELAYGREQKLFIGALDQKLALMHYYT 289 (412)
Q Consensus 262 ~--~~~~~~~~~~~~l~~~~g~L~l~~~~~ 289 (412)
. .... .....++++|+|++++...
T Consensus 264 ~~~~~~~----~~~~a~~~~~~iyv~GG~~ 289 (376)
T PRK14131 264 GSSQEGV----AGAFAGYSNGVLLVAGGAN 289 (376)
T ss_pred CCcCCcc----ceEeceeECCEEEEeeccC
Confidence 0 1000 0022467899999998764
No 24
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=98.14 E-value=0.00017 Score=64.10 Aligned_cols=214 Identities=11% Similarity=0.076 Sum_probs=117.8
Q ss_pred EeeccEEEEeeeccC--CCceeEEEEcCcCcceeecCC---CCcCCCcceEEEEeeeCCCCCEEEEEEEEEecccccccC
Q 046787 103 GICYGLVCLLDYHQK--GLSKSVIVWNPSLESCVRIMF---KFTAANFESVHGFGFDPKSVDYKVVRIVVRDHFIIGVRD 177 (412)
Q Consensus 103 ~s~~GLlll~~~~~~--~~~~~~~V~NP~T~~~~~LP~---p~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~ 177 (412)
-...+.+++-..+++ +.+..++-++|-|.+|..... -+..+...+++.+| +...|+.-...+..+
T Consensus 85 V~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~g-----n~MyiFGGye~~a~~----- 154 (392)
T KOG4693|consen 85 VEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWG-----NQMYIFGGYEEDAQR----- 154 (392)
T ss_pred EEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEEC-----cEEEEecChHHHHHh-----
Confidence 344555555444332 335678888999999987432 01111134444444 122221111100000
Q ss_pred CCCCe-EEEEECCCCCceecCC-CCCCceeeecCCCceEECCeEEEEeecCCCcccccccc--ceeEEEEEECCCceEEE
Q 046787 178 APRPV-VQVFALKVGSWRNVTT-GDTSLCRITVKTPQAYVNGTLHWVGYDTESHHVAQGIQ--RRLVLLAFDLREEVFKE 253 (412)
Q Consensus 178 ~~~~~-~~vyss~t~~Wr~~~~-~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~--~~~~il~fD~~~e~~~~ 253 (412)
... +++++..|-.||.+.. ..+|. ......++.++|.+|..++..+.....-++. ..+.|++||+.++.|..
T Consensus 155 --FS~d~h~ld~~TmtWr~~~Tkg~Ppr--wRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r 230 (392)
T KOG4693|consen 155 --FSQDTHVLDFATMTWREMHTKGDPPR--WRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTR 230 (392)
T ss_pred --hhccceeEeccceeeeehhccCCCch--hhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEecccccccc
Confidence 123 8999999999999866 33443 3344566778999999998765432222222 23789999999999987
Q ss_pred ecCCCCcccccccccccceeeEEEeCCeEEEEEEccccCCCCCCCcEEEEEEeecCCCcceeEEEEeec-cCCccccEEE
Q 046787 254 LNVPDELKTDELAYGREQKLFIGALDQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQFKIDL-RLGLGKMAGL 332 (412)
Q Consensus 254 i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~p~~~ 332 (412)
.+ +.....+ |++. ....+++|++++++...+-. ...--++|..+- ...-|.+...-.. +..-.+-+++
T Consensus 231 ~p--~~~~~P~---GRRS-HS~fvYng~~Y~FGGYng~l---n~HfndLy~FdP--~t~~W~~I~~~Gk~P~aRRRqC~~ 299 (392)
T KOG4693|consen 231 TP--ENTMKPG---GRRS-HSTFVYNGKMYMFGGYNGTL---NVHFNDLYCFDP--KTSMWSVISVRGKYPSARRRQCSV 299 (392)
T ss_pred CC--CCCcCCC---cccc-cceEEEcceEEEecccchhh---hhhhcceeeccc--ccchheeeeccCCCCCcccceeEE
Confidence 52 2111110 1111 46788999999999886211 112236788875 2356888643332 2222244455
Q ss_pred EecCCEEEEE
Q 046787 333 RRNGEMLLVT 342 (412)
Q Consensus 333 ~~~g~~ill~ 342 (412)
..+ +++++.
T Consensus 300 v~g-~kv~LF 308 (392)
T KOG4693|consen 300 VSG-GKVYLF 308 (392)
T ss_pred EEC-CEEEEe
Confidence 444 455444
No 25
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.10 E-value=0.00033 Score=66.80 Aligned_cols=141 Identities=13% Similarity=0.013 Sum_probs=80.6
Q ss_pred eeEEEEcCcCcce----eecCC-CCcCCCcceEEEEeeeCCCCCEEEEEEEEEecccccccCCCCCeEEEEECCCCCcee
Q 046787 121 KSVIVWNPSLESC----VRIMF-KFTAANFESVHGFGFDPKSVDYKVVRIVVRDHFIIGVRDAPRPVVQVFALKVGSWRN 195 (412)
Q Consensus 121 ~~~~V~NP~T~~~----~~LP~-p~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~vyss~t~~Wr~ 195 (412)
..+..+|+.+++| ..+|+ |.... ...++.+ +. +|..+..... ......+++|++.++.|..
T Consensus 88 ~~v~~~d~~~~~w~~~~~~~~~lp~~~~-~~~~~~~--~~-----~iYv~GG~~~------~~~~~~v~~yd~~~~~W~~ 153 (323)
T TIGR03548 88 SSVYRITLDESKEELICETIGNLPFTFE-NGSACYK--DG-----TLYVGGGNRN------GKPSNKSYLFNLETQEWFE 153 (323)
T ss_pred eeEEEEEEcCCceeeeeeEcCCCCcCcc-CceEEEE--CC-----EEEEEeCcCC------CccCceEEEEcCCCCCeeE
Confidence 5678889999987 66776 32211 2222222 11 3444432111 0011229999999999999
Q ss_pred cCCCCCCceeeecCCCceEECCeEEEEeecCCCccccccccceeEEEEEECCCceEEEecCCCCcccccccccccceeeE
Q 046787 196 VTTGDTSLCRITVKTPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKELNVPDELKTDELAYGREQKLFI 275 (412)
Q Consensus 196 ~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~~~~~l 275 (412)
+ +.+|.. .......+.++|.||.+++..... ...+.+||+.+++|+.++............+ ...+
T Consensus 154 ~--~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~--------~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~---~~~~ 219 (323)
T TIGR03548 154 L--PDFPGE-PRVQPVCVKLQNELYVFGGGSNIA--------YTDGYKYSPKKNQWQKVADPTTDSEPISLLG---AASI 219 (323)
T ss_pred C--CCCCCC-CCCcceEEEECCEEEEEcCCCCcc--------ccceEEEecCCCeeEECCCCCCCCCceeccc---eeEE
Confidence 8 444431 123334567899999999764311 1346899999999998853211100000000 0234
Q ss_pred EEeCCeEEEEEEcc
Q 046787 276 GALDQKLALMHYYT 289 (412)
Q Consensus 276 ~~~~g~L~l~~~~~ 289 (412)
+..+++|++++...
T Consensus 220 ~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 220 KINESLLLCIGGFN 233 (323)
T ss_pred EECCCEEEEECCcC
Confidence 55689999998764
No 26
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.09 E-value=0.00047 Score=66.38 Aligned_cols=94 Identities=15% Similarity=0.181 Sum_probs=57.6
Q ss_pred EEEEECCCCCceecCCCCCCceeeecCCCceEECCeEEEEeecCCCccccccccceeEEEEE--ECCCceEEEe-cCCCC
Q 046787 183 VQVFALKVGSWRNVTTGDTSLCRITVKTPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAF--DLREEVFKEL-NVPDE 259 (412)
Q Consensus 183 ~~vyss~t~~Wr~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~f--D~~~e~~~~i-~~P~~ 259 (412)
+++|+..+++|..+ ..+|.. .......+.++|+||.+++...... ....+..| |+++.+|+.+ ++|..
T Consensus 170 v~~YDp~t~~W~~~--~~~p~~-~r~~~~~~~~~~~iyv~GG~~~~~~------~~~~~~~y~~~~~~~~W~~~~~m~~~ 240 (346)
T TIGR03547 170 VLSYDPSTNQWRNL--GENPFL-GTAGSAIVHKGNKLLLINGEIKPGL------RTAEVKQYLFTGGKLEWNKLPPLPPP 240 (346)
T ss_pred EEEEECCCCceeEC--ccCCCC-cCCCceEEEECCEEEEEeeeeCCCc------cchheEEEEecCCCceeeecCCCCCC
Confidence 99999999999999 455531 2233455678999999987542100 11224344 5577799887 44432
Q ss_pred cc-cccccccccceeeEEEeCCeEEEEEEcc
Q 046787 260 LK-TDELAYGREQKLFIGALDQKLALMHYYT 289 (412)
Q Consensus 260 ~~-~~~~~~~~~~~~~l~~~~g~L~l~~~~~ 289 (412)
.. ..... .....++++|+|++++...
T Consensus 241 r~~~~~~~----~~~~a~~~~~~Iyv~GG~~ 267 (346)
T TIGR03547 241 KSSSQEGL----AGAFAGISNGVLLVAGGAN 267 (346)
T ss_pred CCCccccc----cEEeeeEECCEEEEeecCC
Confidence 21 00000 0033677899999998763
No 27
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.94 E-value=0.00015 Score=64.37 Aligned_cols=223 Identities=12% Similarity=0.086 Sum_probs=123.8
Q ss_pred ceeEEEEcCcCcceeecCCCCcCC---CcceEEEEeeeCCCCCEEEEEEEEEecccc-cccC-CC-CCeEEEEECCCCCc
Q 046787 120 SKSVIVWNPSLESCVRIMFKFTAA---NFESVHGFGFDPKSVDYKVVRIVVRDHFII-GVRD-AP-RPVVQVFALKVGSW 193 (412)
Q Consensus 120 ~~~~~V~NP~T~~~~~LP~p~~~~---~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~-~~~~-~~-~~~~~vyss~t~~W 193 (412)
.-.+.+.|-.+-+|..+|+..... ..+.++- |. .-...||.+....- .- |.++ +. +..++-|+.+++.|
T Consensus 43 piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VP--yq--RYGHtvV~y~d~~y-vWGGRND~egaCN~Ly~fDp~t~~W 117 (392)
T KOG4693|consen 43 PIDVHVLNAENYRWTKMPPGITKATIESPYPAVP--YQ--RYGHTVVEYQDKAY-VWGGRNDDEGACNLLYEFDPETNVW 117 (392)
T ss_pred cceeEEeeccceeEEecCcccccccccCCCCccc--hh--hcCceEEEEcceEE-EEcCccCcccccceeeeeccccccc
Confidence 467889999999999999832111 0111110 00 11123444321100 00 1111 12 23389999999999
Q ss_pred eecCC-CCCCceeeecCCCceEECCeEEEEeecCCCccccccccceeEEEEEECCCceEEEec---CCCCcccccccccc
Q 046787 194 RNVTT-GDTSLCRITVKTPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKELN---VPDELKTDELAYGR 269 (412)
Q Consensus 194 r~~~~-~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~---~P~~~~~~~~~~~~ 269 (412)
+..+. ...|. .....++++++..+|..++..... .....-+-+||+++.+|+.+. .|+... .|+
T Consensus 118 ~~p~v~G~vPg--aRDGHsAcV~gn~MyiFGGye~~a-----~~FS~d~h~ld~~TmtWr~~~Tkg~PprwR--DFH--- 185 (392)
T KOG4693|consen 118 KKPEVEGFVPG--ARDGHSACVWGNQMYIFGGYEEDA-----QRFSQDTHVLDFATMTWREMHTKGDPPRWR--DFH--- 185 (392)
T ss_pred cccceeeecCC--ccCCceeeEECcEEEEecChHHHH-----HhhhccceeEeccceeeeehhccCCCchhh--hhh---
Confidence 98855 33443 234456677888999998764311 112356889999999999984 455442 232
Q ss_pred cceeeEEEeCCeEEEEEEccccCCCC----CCCcEEEEEEeecCCCcceeEEEEeeccCCccccEEEE-ecCCEEEEEE-
Q 046787 270 EQKLFIGALDQKLALMHYYTQWYNSP----SYDGCCIWMMKEYGLGESWTKQFKIDLRLGLGKMAGLR-RNGEMLLVTR- 343 (412)
Q Consensus 270 ~~~~~l~~~~g~L~l~~~~~~~~~~~----~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~-~~g~~ill~~- 343 (412)
...++++..++++...+..... ..-.-+|=.|+- ..+.|.+...-.+...=.+-...+ -| +++++..
T Consensus 186 ----~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~--~T~aW~r~p~~~~~P~GRRSHS~fvYn-g~~Y~FGG 258 (392)
T KOG4693|consen 186 ----TASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDL--ATGAWTRTPENTMKPGGRRSHSTFVYN-GKMYMFGG 258 (392)
T ss_pred ----hhhhccceEEEeccccccCCCccchhhhhcceeEEEec--cccccccCCCCCcCCCcccccceEEEc-ceEEEecc
Confidence 4456789999988876432110 111223444543 246788763222211111111222 24 3444432
Q ss_pred -------cCCeEEEEECCCCcEEEEEEecc
Q 046787 344 -------YNEELVSFNTVNRKMQKLGIYGE 366 (412)
Q Consensus 344 -------~~~~l~~yd~~t~~~~~v~~~~~ 366 (412)
.-.+++.||++|..|+.|...|+
T Consensus 259 Yng~ln~HfndLy~FdP~t~~W~~I~~~Gk 288 (392)
T KOG4693|consen 259 YNGTLNVHFNDLYCFDPKTSMWSVISVRGK 288 (392)
T ss_pred cchhhhhhhcceeecccccchheeeeccCC
Confidence 23469999999999999988765
No 28
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=97.87 E-value=0.00055 Score=64.50 Aligned_cols=228 Identities=13% Similarity=0.072 Sum_probs=132.6
Q ss_pred ceeEEEEcCcCcceeecCCCCcCCCcceEEEEeeeCCCCCEEEEEEEEEecccccccCCC--CCe-EEEEECCCCCceec
Q 046787 120 SKSVIVWNPSLESCVRIMFKFTAANFESVHGFGFDPKSVDYKVVRIVVRDHFIIGVRDAP--RPV-VQVFALKVGSWRNV 196 (412)
Q Consensus 120 ~~~~~V~NP~T~~~~~LP~p~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~--~~~-~~vyss~t~~Wr~~ 196 (412)
...++++|--+.+|+.+-.|....+ .+.......|+ + +-.+.=..... +.... -.. ..+|++.|+.|..+
T Consensus 97 YndLy~Yn~k~~eWkk~~spn~P~p-Rsshq~va~~s-~-~l~~fGGEfaS----Pnq~qF~HYkD~W~fd~~trkweql 169 (521)
T KOG1230|consen 97 YNDLYSYNTKKNEWKKVVSPNAPPP-RSSHQAVAVPS-N-ILWLFGGEFAS----PNQEQFHHYKDLWLFDLKTRKWEQL 169 (521)
T ss_pred eeeeeEEeccccceeEeccCCCcCC-CccceeEEecc-C-eEEEeccccCC----cchhhhhhhhheeeeeeccchheee
Confidence 3678999999999998765332221 11122222332 2 11111111111 01000 123 89999999999999
Q ss_pred CCCCCCceeeecCCCceEECCeEEEEeecCCCccccccccceeEEEEEECCCceEEEecCCCCcccccccccccceeeEE
Q 046787 197 TTGDTSLCRITVKTPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKELNVPDELKTDELAYGREQKLFIG 276 (412)
Q Consensus 197 ~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~~~~~l~ 276 (412)
+....|. .....+.|...-.|...++...... +...-+-+.+||+++=+|+.+..+... +....| +++.
T Consensus 170 ~~~g~PS--~RSGHRMvawK~~lilFGGFhd~nr---~y~YyNDvy~FdLdtykW~Klepsga~--PtpRSG----cq~~ 238 (521)
T KOG1230|consen 170 EFGGGPS--PRSGHRMVAWKRQLILFGGFHDSNR---DYIYYNDVYAFDLDTYKWSKLEPSGAG--PTPRSG----CQFS 238 (521)
T ss_pred ccCCCCC--CCccceeEEeeeeEEEEcceecCCC---ceEEeeeeEEEeccceeeeeccCCCCC--CCCCCc----ceEE
Confidence 6544443 2234455555555555554433210 011114589999999999999765432 111112 5566
Q ss_pred Ee-CCeEEEEEEccccC----CCCCCCcEEEEEEeecC---CCcceeEEEEeecc--CCccccEEEEecCCEEEEEEc--
Q 046787 277 AL-DQKLALMHYYTQWY----NSPSYDGCCIWMMKEYG---LGESWTKQFKIDLR--LGLGKMAGLRRNGEMLLVTRY-- 344 (412)
Q Consensus 277 ~~-~g~L~l~~~~~~~~----~~~~~~~l~iW~l~~~~---~~~~W~~~~~i~~~--~~~~~p~~~~~~g~~ill~~~-- 344 (412)
+. +|.+++.+.+.... -+.+...-++|.|+-.. .+-.|+++..+.+. ...+.-+++++++..++|..-
T Consensus 239 vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D 318 (521)
T KOG1230|consen 239 VTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCD 318 (521)
T ss_pred ecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceec
Confidence 66 88888877654211 12234556899998432 23578888777653 234567888888777777521
Q ss_pred ------------CCeEEEEECCCCcEEEEEEec
Q 046787 345 ------------NEELVSFNTVNRKMQKLGIYG 365 (412)
Q Consensus 345 ------------~~~l~~yd~~t~~~~~v~~~~ 365 (412)
-+.|+.||+..++|...++++
T Consensus 319 ~eeeeEsl~g~F~NDLy~fdlt~nrW~~~qlq~ 351 (521)
T KOG1230|consen 319 LEEEEESLSGEFFNDLYFFDLTRNRWSEGQLQG 351 (521)
T ss_pred ccccchhhhhhhhhhhhheecccchhhHhhhcc
Confidence 135899999999998877654
No 29
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.67 E-value=0.00073 Score=62.14 Aligned_cols=43 Identities=26% Similarity=0.464 Sum_probs=38.5
Q ss_pred CCCCc----HHHHHHHHccCCcccceeeeecchhhhhhhcCcccccc
Q 046787 2 SDYVP----EEVVAQILFRLPAKSVSEFRCVCKSWCALINDPTFISN 44 (412)
Q Consensus 2 ~~~LP----~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~p~F~~~ 44 (412)
+..|| +++.+.||+.|...+|..|..|||+|+++++++-.-++
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKk 121 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKK 121 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHH
Confidence 35689 99999999999999999999999999999999875544
No 30
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.00015 Score=65.85 Aligned_cols=41 Identities=27% Similarity=0.452 Sum_probs=37.3
Q ss_pred CCCcHHHHHHHHccCCcccceeeeecchhhhhhhcCccccc
Q 046787 3 DYVPEEVVAQILFRLPAKSVSEFRCVCKSWCALINDPTFIS 43 (412)
Q Consensus 3 ~~LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~p~F~~ 43 (412)
+.|||||++.||+.||.|+|++...|||+|+++-++.....
T Consensus 99 ~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~ 139 (419)
T KOG2120|consen 99 DSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQ 139 (419)
T ss_pred ccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccccee
Confidence 57999999999999999999999999999999988766544
No 31
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=96.92 E-value=0.19 Score=50.61 Aligned_cols=209 Identities=13% Similarity=0.062 Sum_probs=120.5
Q ss_pred eEEEEcCcCcceeecCCCCcCC---CcceEEEEeeeCCCCCEEEEEEEEEecccccccCCCC-Ce-EEEEECCCCCceec
Q 046787 122 SVIVWNPSLESCVRIMFKFTAA---NFESVHGFGFDPKSVDYKVVRIVVRDHFIIGVRDAPR-PV-VQVFALKVGSWRNV 196 (412)
Q Consensus 122 ~~~V~NP~T~~~~~LP~p~~~~---~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~-~~-~~vyss~t~~Wr~~ 196 (412)
.++|+|-.+..|.....-.... ....+...+ =+++.+.-... ... .. +++|+..|+.|+..
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~-------~~l~lfGG~~~-------~~~~~~~l~~~d~~t~~W~~l 154 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVG-------DKLYLFGGTDK-------KYRNLNELHSLDLSTRTWSLL 154 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEEEC-------CeEEEEccccC-------CCCChhheEeccCCCCcEEEe
Confidence 5999999998888766511111 012222222 13333321110 011 22 99999999999998
Q ss_pred CC-CCCCceeeecCCCceEECCeEEEEeecCCCccccccccceeEEEEEECCCceEEEecCCCCcccccccccccceeeE
Q 046787 197 TT-GDTSLCRITVKTPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKELNVPDELKTDELAYGREQKLFI 275 (412)
Q Consensus 197 ~~-~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~~~~~l 275 (412)
.. .+.|. .......+..+-++|..++...... .-+.+..||+.+.+|..+............ ...
T Consensus 155 ~~~~~~P~--~r~~Hs~~~~g~~l~vfGG~~~~~~------~~ndl~i~d~~~~~W~~~~~~g~~P~pR~g------H~~ 220 (482)
T KOG0379|consen 155 SPTGDPPP--PRAGHSATVVGTKLVVFGGIGGTGD------SLNDLHIYDLETSTWSELDTQGEAPSPRYG------HAM 220 (482)
T ss_pred cCcCCCCC--CcccceEEEECCEEEEECCccCccc------ceeeeeeeccccccceecccCCCCCCCCCC------ceE
Confidence 55 33232 2344556667778888887654221 236799999999999998654433222222 567
Q ss_pred EEeCCeEEEEEEccccCCCCCCCcEEEEEEeecCCCcceeEEEEeec-cC-CccccEEEEecCCEEEEEEc-------CC
Q 046787 276 GALDQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQFKIDL-RL-GLGKMAGLRRNGEMLLVTRY-------NE 346 (412)
Q Consensus 276 ~~~~g~L~l~~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~-~~~~p~~~~~~g~~ill~~~-------~~ 346 (412)
++.+++++++.... ..+..--++|.|+-. ...|.+.-...- +. ...+...+..+ .++++... -.
T Consensus 221 ~~~~~~~~v~gG~~----~~~~~l~D~~~ldl~--~~~W~~~~~~g~~p~~R~~h~~~~~~~-~~~l~gG~~~~~~~~l~ 293 (482)
T KOG0379|consen 221 VVVGNKLLVFGGGD----DGDVYLNDVHILDLS--TWEWKLLPTGGDLPSPRSGHSLTVSGD-HLLLFGGGTDPKQEPLG 293 (482)
T ss_pred EEECCeEEEEeccc----cCCceecceEeeecc--cceeeeccccCCCCCCcceeeeEEECC-EEEEEcCCccccccccc
Confidence 88899999988764 112234478999852 356774432221 11 12233333222 33334321 23
Q ss_pred eEEEEECCCCcEEEEEEec
Q 046787 347 ELVSFNTVNRKMQKLGIYG 365 (412)
Q Consensus 347 ~l~~yd~~t~~~~~v~~~~ 365 (412)
+++.||.++..|.++...+
T Consensus 294 ~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 294 DLYGLDLETLVWSKVESVG 312 (482)
T ss_pred ccccccccccceeeeeccc
Confidence 5889999999999886543
No 32
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=96.82 E-value=0.045 Score=55.13 Aligned_cols=160 Identities=12% Similarity=0.097 Sum_probs=101.9
Q ss_pred EEEEECCCCCceecCC-CCCCceeeecCCCceEECCeEEEEeecCCCccccccccceeEEEEEECCCceEEEecCCCCcc
Q 046787 183 VQVFALKVGSWRNVTT-GDTSLCRITVKTPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKELNVPDELK 261 (412)
Q Consensus 183 ~~vyss~t~~Wr~~~~-~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~ 261 (412)
+++++..+..|..... ...|. .......+.++..||.+++...... ....+-+||+.+.+|..+..-....
T Consensus 90 l~~~d~~~~~w~~~~~~g~~p~--~r~g~~~~~~~~~l~lfGG~~~~~~------~~~~l~~~d~~t~~W~~l~~~~~~P 161 (482)
T KOG0379|consen 90 LYVLDLESQLWTKPAATGDEPS--PRYGHSLSAVGDKLYLFGGTDKKYR------NLNELHSLDLSTRTWSLLSPTGDPP 161 (482)
T ss_pred eEEeecCCcccccccccCCCCC--cccceeEEEECCeEEEEccccCCCC------ChhheEeccCCCCcEEEecCcCCCC
Confidence 7888888888987643 33442 2344567788999999998763111 2257999999999999874322110
Q ss_pred cccccccccceeeEEEeCCeEEEEEEccccCCCCCCCcEEEEEEeecCCCcceeEEEEeeccCC--ccccEEEEecCCEE
Q 046787 262 TDELAYGREQKLFIGALDQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQFKIDLRLG--LGKMAGLRRNGEML 339 (412)
Q Consensus 262 ~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~--~~~p~~~~~~g~~i 339 (412)
..... ..+++.+.+|++++.... .....-++|+++-. ...|.+..+...... .+.-..+.++ ..+
T Consensus 162 ~~r~~------Hs~~~~g~~l~vfGG~~~----~~~~~ndl~i~d~~--~~~W~~~~~~g~~P~pR~gH~~~~~~~-~~~ 228 (482)
T KOG0379|consen 162 PPRAG------HSATVVGTKLVVFGGIGG----TGDSLNDLHIYDLE--TSTWSELDTQGEAPSPRYGHAMVVVGN-KLL 228 (482)
T ss_pred CCccc------ceEEEECCEEEEECCccC----cccceeeeeeeccc--cccceecccCCCCCCCCCCceEEEECC-eEE
Confidence 11111 567788899999988761 11246689999852 356999887765222 2334444433 333
Q ss_pred EEEEcC------CeEEEEECCCCcEEEEEE
Q 046787 340 LVTRYN------EELVSFNTVNRKMQKLGI 363 (412)
Q Consensus 340 ll~~~~------~~l~~yd~~t~~~~~v~~ 363 (412)
++.... ..++.+|+.+.+|+++..
T Consensus 229 v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~ 258 (482)
T KOG0379|consen 229 VFGGGDDGDVYLNDVHILDLSTWEWKLLPT 258 (482)
T ss_pred EEeccccCCceecceEeeecccceeeeccc
Confidence 333221 359999999999986644
No 33
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=96.52 E-value=0.056 Score=51.41 Aligned_cols=159 Identities=14% Similarity=0.145 Sum_probs=95.4
Q ss_pred EEEEECCCCCceecCCCCCCceeeecCCCceEEC-CeEEEEeecCCCccccccccceeEEEEEECCCceEEEecCCCCcc
Q 046787 183 VQVFALKVGSWRNVTTGDTSLCRITVKTPQAYVN-GTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKELNVPDELK 261 (412)
Q Consensus 183 ~~vyss~t~~Wr~~~~~~~p~~~~~~~~~~v~~~-G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~ 261 (412)
++.|+..++.|+.+..+..|. ......+|.+- |.+|..++...++.+.+= -.-.-+..||+.+.+|..+.++....
T Consensus 100 Ly~Yn~k~~eWkk~~spn~P~--pRsshq~va~~s~~l~~fGGEfaSPnq~qF-~HYkD~W~fd~~trkweql~~~g~PS 176 (521)
T KOG1230|consen 100 LYSYNTKKNEWKKVVSPNAPP--PRSSHQAVAVPSNILWLFGGEFASPNQEQF-HHYKDLWLFDLKTRKWEQLEFGGGPS 176 (521)
T ss_pred eeEEeccccceeEeccCCCcC--CCccceeEEeccCeEEEeccccCCcchhhh-hhhhheeeeeeccchheeeccCCCCC
Confidence 799999999999986544443 22334445444 766655655443321000 00023889999999999999887543
Q ss_pred cccccccccceeeEEEeCCeEEEEEEccccCCCCCCCcEEEEEEeecCCCcceeEEEEeec--c-CCccccEEEEecCCE
Q 046787 262 TDELAYGREQKLFIGALDQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQFKIDL--R-LGLGKMAGLRRNGEM 338 (412)
Q Consensus 262 ~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~--~-~~~~~p~~~~~~g~~ 338 (412)
. ..| .++++.+.+|.+++.-.+...+. .---+||..+- ..-.|.+.-. +- | ..-+.-+.+.++|++
T Consensus 177 ~---RSG----HRMvawK~~lilFGGFhd~nr~y-~YyNDvy~FdL--dtykW~Klep-sga~PtpRSGcq~~vtpqg~i 245 (521)
T KOG1230|consen 177 P---RSG----HRMVAWKRQLILFGGFHDSNRDY-IYYNDVYAFDL--DTYKWSKLEP-SGAGPTPRSGCQFSVTPQGGI 245 (521)
T ss_pred C---Ccc----ceeEEeeeeEEEEcceecCCCce-EEeeeeEEEec--cceeeeeccC-CCCCCCCCCcceEEecCCCcE
Confidence 2 222 46788899999998765221110 11235777763 2357999754 21 1 122355666767777
Q ss_pred EEEEEc--------------CCeEEEEECCC
Q 046787 339 LLVTRY--------------NEELVSFNTVN 355 (412)
Q Consensus 339 ill~~~--------------~~~l~~yd~~t 355 (412)
++.... ...++..++++
T Consensus 246 ~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~ 276 (521)
T KOG1230|consen 246 VVYGGYSKQRVKKDVDKGTRHSDMFLLKPED 276 (521)
T ss_pred EEEcchhHhhhhhhhhcCceeeeeeeecCCc
Confidence 766521 23488888887
No 34
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=95.57 E-value=0.86 Score=41.53 Aligned_cols=134 Identities=14% Similarity=0.225 Sum_probs=85.5
Q ss_pred ecCCCceEECCeEEEEeecCCCccccccccceeEEEEEECCCceEE-EecCCCCcccccccc--cccceeeEEEeCCeEE
Q 046787 207 TVKTPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFK-ELNVPDELKTDELAY--GREQKLFIGALDQKLA 283 (412)
Q Consensus 207 ~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~-~i~~P~~~~~~~~~~--~~~~~~~l~~~~g~L~ 283 (412)
...+..|..||.+|...... ..|+.||+.++... ...+|.......+.| +....+.+++.+.-|.
T Consensus 69 ~~GtG~vVYngslYY~~~~s------------~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLW 136 (250)
T PF02191_consen 69 WQGTGHVVYNGSLYYNKYNS------------RNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLW 136 (250)
T ss_pred eccCCeEEECCcEEEEecCC------------ceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEE
Confidence 34556677899999998743 57999999999998 778887543211222 1223378899999999
Q ss_pred EEEEccccCCCCCCCcEEEEEEeecC--CCcceeEEEEeeccCCccccEEEEecCCEEEEEEc-----CCeEEEEECCCC
Q 046787 284 LMHYYTQWYNSPSYDGCCIWMMKEYG--LGESWTKQFKIDLRLGLGKMAGLRRNGEMLLVTRY-----NEELVSFNTVNR 356 (412)
Q Consensus 284 l~~~~~~~~~~~~~~~l~iW~l~~~~--~~~~W~~~~~i~~~~~~~~p~~~~~~g~~ill~~~-----~~~l~~yd~~t~ 356 (412)
++....+ ....+-|-.|+... ..+.|...+ . ....+..+-+ + |+++.... ..-.+.||+.++
T Consensus 137 vIYat~~-----~~g~ivvskld~~tL~v~~tw~T~~--~-k~~~~naFmv--C-GvLY~~~s~~~~~~~I~yafDt~t~ 205 (250)
T PF02191_consen 137 VIYATED-----NNGNIVVSKLDPETLSVEQTWNTSY--P-KRSAGNAFMV--C-GVLYATDSYDTRDTEIFYAFDTYTG 205 (250)
T ss_pred EEEecCC-----CCCcEEEEeeCcccCceEEEEEecc--C-chhhcceeeE--e-eEEEEEEECCCCCcEEEEEEECCCC
Confidence 9987751 23457777777532 345676532 2 1223222222 2 46666532 223689999999
Q ss_pred cEEEEEE
Q 046787 357 KMQKLGI 363 (412)
Q Consensus 357 ~~~~v~~ 363 (412)
+-+.+.+
T Consensus 206 ~~~~~~i 212 (250)
T PF02191_consen 206 KEEDVSI 212 (250)
T ss_pred ceeceee
Confidence 9887765
No 35
>PF13964 Kelch_6: Kelch motif
Probab=95.52 E-value=0.036 Score=36.65 Aligned_cols=40 Identities=15% Similarity=0.163 Sum_probs=31.5
Q ss_pred CCceEECCeEEEEeecCCCccccccccceeEEEEEECCCceEEEec
Q 046787 210 TPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKELN 255 (412)
Q Consensus 210 ~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~ 255 (412)
...|.++|.||.+++..... .....+..||+.+++|+.++
T Consensus 5 ~s~v~~~~~iyv~GG~~~~~------~~~~~v~~yd~~t~~W~~~~ 44 (50)
T PF13964_consen 5 HSAVVVGGKIYVFGGYDNSG------KYSNDVERYDPETNTWEQLP 44 (50)
T ss_pred CEEEEECCEEEEECCCCCCC------CccccEEEEcCCCCcEEECC
Confidence 45688999999999876511 12367999999999999984
No 36
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.52 E-value=0.0027 Score=58.11 Aligned_cols=42 Identities=21% Similarity=0.460 Sum_probs=38.2
Q ss_pred CCCcHHHHHHHHccCC-----cccceeeeecchhhhhhhcCcccccc
Q 046787 3 DYVPEEVVAQILFRLP-----AKSVSEFRCVCKSWCALINDPTFISN 44 (412)
Q Consensus 3 ~~LP~Dll~eIL~rLP-----~ksl~r~r~VcK~W~~li~~p~F~~~ 44 (412)
..||||||.+||.++= ..+|-++.+|||.|+-...+|.|-++
T Consensus 108 ~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~ 154 (366)
T KOG2997|consen 108 SVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRL 154 (366)
T ss_pred hhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHH
Confidence 5799999999998765 48999999999999999999999877
No 37
>smart00284 OLF Olfactomedin-like domains.
Probab=95.29 E-value=1 Score=40.97 Aligned_cols=134 Identities=16% Similarity=0.236 Sum_probs=83.5
Q ss_pred ecCCCceEECCeEEEEeecCCCccccccccceeEEEEEECCCceEEE-ecCCCCcccccccc--cccceeeEEEeCCeEE
Q 046787 207 TVKTPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKE-LNVPDELKTDELAY--GREQKLFIGALDQKLA 283 (412)
Q Consensus 207 ~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~-i~~P~~~~~~~~~~--~~~~~~~l~~~~g~L~ 283 (412)
+..+..|+.||.||...... ..|+.||+.+++... ..+|...-...+.| |...-+.|++.+.-|.
T Consensus 74 ~~GtG~VVYngslYY~~~~s------------~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLW 141 (255)
T smart00284 74 GQGTGVVVYNGSLYFNKFNS------------HDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLW 141 (255)
T ss_pred cccccEEEECceEEEEecCC------------ccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceE
Confidence 34556788999999966543 469999999999864 45675322222223 1223378999999999
Q ss_pred EEEEccccCCCCCCCcEEEEEEeecC--CCcceeEEEEeeccCCccccEEEEecCCEEEEEEc-----CCeEEEEECCCC
Q 046787 284 LMHYYTQWYNSPSYDGCCIWMMKEYG--LGESWTKQFKIDLRLGLGKMAGLRRNGEMLLVTRY-----NEELVSFNTVNR 356 (412)
Q Consensus 284 l~~~~~~~~~~~~~~~l~iW~l~~~~--~~~~W~~~~~i~~~~~~~~p~~~~~~g~~ill~~~-----~~~l~~yd~~t~ 356 (412)
++....+ ....|.|-.|+... ..+.|...+ + ....+..+-+ + |+++.... ..-.+.||..++
T Consensus 142 vIYat~~-----~~g~ivvSkLnp~tL~ve~tW~T~~--~-k~sa~naFmv--C-GvLY~~~s~~~~~~~I~yayDt~t~ 210 (255)
T smart00284 142 VIYATEQ-----NAGKIVISKLNPATLTIENTWITTY--N-KRSASNAFMI--C-GILYVTRSLGSKGEKVFYAYDTNTG 210 (255)
T ss_pred EEEeccC-----CCCCEEEEeeCcccceEEEEEEcCC--C-cccccccEEE--e-eEEEEEccCCCCCcEEEEEEECCCC
Confidence 9977651 24678888887542 345676632 2 1222222222 2 46666532 223789999998
Q ss_pred cEEEEEE
Q 046787 357 KMQKLGI 363 (412)
Q Consensus 357 ~~~~v~~ 363 (412)
+-+.+.+
T Consensus 211 ~~~~~~i 217 (255)
T smart00284 211 KEGHLDI 217 (255)
T ss_pred ccceeee
Confidence 8777655
No 38
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=95.06 E-value=0.083 Score=34.20 Aligned_cols=39 Identities=15% Similarity=0.199 Sum_probs=31.5
Q ss_pred CCceEECCeEEEEeecCCCccccccccceeEEEEEECCCceEEEe
Q 046787 210 TPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKEL 254 (412)
Q Consensus 210 ~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i 254 (412)
..++.++|.||.+++..... .....+..||+.+.+|+.+
T Consensus 5 ~~~~~~~~~iyv~GG~~~~~------~~~~~v~~yd~~~~~W~~~ 43 (47)
T PF01344_consen 5 HAAVVVGNKIYVIGGYDGNN------QPTNSVEVYDPETNTWEEL 43 (47)
T ss_dssp EEEEEETTEEEEEEEBESTS------SBEEEEEEEETTTTEEEEE
T ss_pred CEEEEECCEEEEEeeecccC------ceeeeEEEEeCCCCEEEEc
Confidence 45678999999999876511 1447899999999999987
No 39
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=94.89 E-value=3.8 Score=41.83 Aligned_cols=43 Identities=26% Similarity=0.485 Sum_probs=37.9
Q ss_pred CCCCcHHHHHHHHccCCcccceeeeecchhhhhhhcCcccccc
Q 046787 2 SDYVPEEVVAQILFRLPAKSVSEFRCVCKSWCALINDPTFISN 44 (412)
Q Consensus 2 ~~~LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~p~F~~~ 44 (412)
+..||.++...||..|+.++++++++||+.|+.++.+.....+
T Consensus 108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~ 150 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWR 150 (537)
T ss_pred hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhh
Confidence 3569999999999999999999999999999999987665543
No 40
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=94.75 E-value=1.4 Score=43.35 Aligned_cols=209 Identities=13% Similarity=0.138 Sum_probs=102.8
Q ss_pred ceeEEEEcCcCcceeecCCCCcC-CCcceEEEEeeeCCCCCEEEEEE---EEEecccccccCCCCCeEEEEECCCC--Cc
Q 046787 120 SKSVIVWNPSLESCVRIMFKFTA-ANFESVHGFGFDPKSVDYKVVRI---VVRDHFIIGVRDAPRPVVQVFALKVG--SW 193 (412)
Q Consensus 120 ~~~~~V~NP~T~~~~~LP~p~~~-~~~~~~~~~g~d~~~~~ykVv~~---~~~~~~~~~~~~~~~~~~~vyss~t~--~W 193 (412)
-..+.|+|-+|+||.. |.-... .....++||.+|. -++++| .+... ..=+.|.+... .|
T Consensus 56 iDELHvYNTatnqWf~-PavrGDiPpgcAA~GfvcdG----trilvFGGMvEYGk----------YsNdLYELQasRWeW 120 (830)
T KOG4152|consen 56 IDELHVYNTATNQWFA-PAVRGDIPPGCAAFGFVCDG----TRILVFGGMVEYGK----------YSNDLYELQASRWEW 120 (830)
T ss_pred hhhhhhhccccceeec-chhcCCCCCchhhcceEecC----ceEEEEccEeeecc----------ccchHHHhhhhhhhH
Confidence 4678999999999965 331111 1122344554442 344444 22221 11466666654 57
Q ss_pred eecCC----CCCCceeeecCCCceEECCeEEEEeecCCCcccc----ccccceeEEEEEECCCceEEE-e-----cCCCC
Q 046787 194 RNVTT----GDTSLCRITVKTPQAYVNGTLHWVGYDTESHHVA----QGIQRRLVLLAFDLREEVFKE-L-----NVPDE 259 (412)
Q Consensus 194 r~~~~----~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~----~~~~~~~~il~fD~~~e~~~~-i-----~~P~~ 259 (412)
+.+.. ...|- +.....+-..+..++|..++-.+..... .-+.+..+|+-+-........ | .+|+.
T Consensus 121 krlkp~~p~nG~pP-CPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~p 199 (830)
T KOG4152|consen 121 KRLKPKTPKNGPPP-CPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPP 199 (830)
T ss_pred hhcCCCCCCCCCCC-CCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCC
Confidence 76643 11112 2333444555778999998654322110 112233566666666664332 2 34544
Q ss_pred cccccccccccceeeE-EEeCC---eEEEEEEccccCCCCCCCcEEEEEEeecCCCcceeEEE---EeeccCCccccEEE
Q 046787 260 LKTDELAYGREQKLFI-GALDQ---KLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQF---KIDLRLGLGKMAGL 332 (412)
Q Consensus 260 ~~~~~~~~~~~~~~~l-~~~~g---~L~l~~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~---~i~~~~~~~~p~~~ 332 (412)
.+.+. ..+ .+.|. ++++.+.-. +..-=++|.|+- ....|.+-. ..+++..++.-..+
T Consensus 200 RESHT--------AViY~eKDs~~skmvvyGGM~------G~RLgDLW~Ldl--~Tl~W~kp~~~G~~PlPRSLHsa~~I 263 (830)
T KOG4152|consen 200 RESHT--------AVIYTEKDSKKSKMVVYGGMS------GCRLGDLWTLDL--DTLTWNKPSLSGVAPLPRSLHSATTI 263 (830)
T ss_pred cccce--------eEEEEeccCCcceEEEEcccc------cccccceeEEec--ceeecccccccCCCCCCcccccceee
Confidence 43221 111 12222 233333332 112236999995 246898853 22233333322222
Q ss_pred EecCCEEEEE--------------------EcCCeEEEEECCCCcEEEEEE
Q 046787 333 RRNGEMLLVT--------------------RYNEELVSFNTVNRKMQKLGI 363 (412)
Q Consensus 333 ~~~g~~ill~--------------------~~~~~l~~yd~~t~~~~~v~~ 363 (412)
|+++|+. .....+-++|+.+.+|+.+.+
T Consensus 264 ---GnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~ 311 (830)
T KOG4152|consen 264 ---GNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLM 311 (830)
T ss_pred ---cceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeee
Confidence 2344332 113458899999999998855
No 41
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=93.93 E-value=4 Score=36.38 Aligned_cols=29 Identities=21% Similarity=0.205 Sum_probs=23.6
Q ss_pred EecCCEEEEEEcCCeEEEEECCCCcEEEE
Q 046787 333 RRNGEMLLVTRYNEELVSFNTVNRKMQKL 361 (412)
Q Consensus 333 ~~~g~~ill~~~~~~l~~yd~~t~~~~~v 361 (412)
...++.|++...+++++.+|++|++..+.
T Consensus 209 ~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 209 SVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp ECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred eeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 34668888888788999999999997653
No 42
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=92.97 E-value=0.29 Score=32.04 Aligned_cols=44 Identities=16% Similarity=0.178 Sum_probs=31.6
Q ss_pred CCceEECCeEEEEeecCCCccccccccceeEEEEEECCCceEEEecCC
Q 046787 210 TPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKELNVP 257 (412)
Q Consensus 210 ~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~~P 257 (412)
..++.++++||.+++..... .......+..||+++.+|+.++.+
T Consensus 5 hs~~~~~~kiyv~GG~~~~~----~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 5 HSAVVLDGKIYVFGGYGTDN----GGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred eEEEEECCEEEEECCcccCC----CCcccceeEEEECCCCEEeecCCC
Confidence 45678999999999871100 011346799999999999988643
No 43
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=91.59 E-value=9.7 Score=34.02 Aligned_cols=111 Identities=14% Similarity=0.214 Sum_probs=58.5
Q ss_pred EEEEEECCCceEEEecCCCCcc-cccc-cccccceeeEEEe--CC--eEEEEEEccccCCCCCCCcEEEEEEeecCCCcc
Q 046787 240 VLLAFDLREEVFKELNVPDELK-TDEL-AYGREQKLFIGAL--DQ--KLALMHYYTQWYNSPSYDGCCIWMMKEYGLGES 313 (412)
Q Consensus 240 ~il~fD~~~e~~~~i~~P~~~~-~~~~-~~~~~~~~~l~~~--~g--~L~l~~~~~~~~~~~~~~~l~iW~l~~~~~~~~ 313 (412)
.+...|+.|+++..+|.|+... .... . ..++-. .+ ++..+.... .......++|..+.. .+
T Consensus 15 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~------~~~G~d~~~~~YKVv~~~~~~---~~~~~~~~~Vys~~~----~~ 81 (230)
T TIGR01640 15 RLVVWNPSTGQSRWLPTPKSRRSNKESDT------YFLGYDPIEKQYKVLCFSDRS---GNRNQSEHQVYTLGS----NS 81 (230)
T ss_pred cEEEECCCCCCEEecCCCCCcccccccce------EEEeecccCCcEEEEEEEeec---CCCCCccEEEEEeCC----CC
Confidence 5899999999999998765321 0110 1 112211 12 222222211 001235677777764 47
Q ss_pred eeEEEEeeccCCccccEEEEecCCEEEEEEcCC-----eEEEEECCCCcEEE-EEEe
Q 046787 314 WTKQFKIDLRLGLGKMAGLRRNGEMLLVTRYNE-----ELVSFNTVNRKMQK-LGIY 364 (412)
Q Consensus 314 W~~~~~i~~~~~~~~p~~~~~~g~~ill~~~~~-----~l~~yd~~t~~~~~-v~~~ 364 (412)
|............... ++.-+|.+.++..... .++.||+.++++++ +..+
T Consensus 82 Wr~~~~~~~~~~~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P 137 (230)
T TIGR01640 82 WRTIECSPPHHPLKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLP 137 (230)
T ss_pred ccccccCCCCccccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecC
Confidence 9987632211111122 5555644444443211 59999999999995 6654
No 44
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=90.93 E-value=11 Score=33.45 Aligned_cols=140 Identities=11% Similarity=0.090 Sum_probs=75.5
Q ss_pred EEEEECCCC--CceecCCCCCCceeeecCCCceEECCeEEEEeecCCCccccccccceeEEEEEECCCceEEE-ecCCCC
Q 046787 183 VQVFALKVG--SWRNVTTGDTSLCRITVKTPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKE-LNVPDE 259 (412)
Q Consensus 183 ~~vyss~t~--~Wr~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~-i~~P~~ 259 (412)
+..++..++ .|+.- ...+. .......+.-+|.+|..... ..|.++|..+.+-.. ..++..
T Consensus 5 l~~~d~~tG~~~W~~~--~~~~~--~~~~~~~~~~~~~v~~~~~~-------------~~l~~~d~~tG~~~W~~~~~~~ 67 (238)
T PF13360_consen 5 LSALDPRTGKELWSYD--LGPGI--GGPVATAVPDGGRVYVASGD-------------GNLYALDAKTGKVLWRFDLPGP 67 (238)
T ss_dssp EEEEETTTTEEEEEEE--CSSSC--SSEEETEEEETTEEEEEETT-------------SEEEEEETTTSEEEEEEECSSC
T ss_pred EEEEECCCCCEEEEEE--CCCCC--CCccceEEEeCCEEEEEcCC-------------CEEEEEECCCCCEEEEeecccc
Confidence 677888777 58885 21111 00111234467888877432 469999986554332 344443
Q ss_pred cccccccccccceeeEEEeCCeEEEEEEccccCCCCCCCcEEEEEEeecCCCcceeEEEEeeccCCccccEEEEecCCEE
Q 046787 260 LKTDELAYGREQKLFIGALDQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQFKIDLRLGLGKMAGLRRNGEML 339 (412)
Q Consensus 260 ~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~g~~i 339 (412)
.. ......++.+++.. .+ . .|+.++-...+..|..............+......++.+
T Consensus 68 ~~-----------~~~~~~~~~v~v~~-~~--------~--~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (238)
T PF13360_consen 68 IS-----------GAPVVDGGRVYVGT-SD--------G--SLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRL 125 (238)
T ss_dssp GG-----------SGEEEETTEEEEEE-TT--------S--EEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEE
T ss_pred cc-----------ceeeeccccccccc-ce--------e--eeEecccCCcceeeeeccccccccccccccCceEecCEE
Confidence 32 12355677776665 22 2 566665222245677422221111122222222236788
Q ss_pred EEEEcCCeEEEEECCCCcEEEE
Q 046787 340 LVTRYNEELVSFNTVNRKMQKL 361 (412)
Q Consensus 340 ll~~~~~~l~~yd~~t~~~~~v 361 (412)
++....+.++.+|+++++..+-
T Consensus 126 ~~~~~~g~l~~~d~~tG~~~w~ 147 (238)
T PF13360_consen 126 YVGTSSGKLVALDPKTGKLLWK 147 (238)
T ss_dssp EEEETCSEEEEEETTTTEEEEE
T ss_pred EEEeccCcEEEEecCCCcEEEE
Confidence 8887788899999999987543
No 45
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.61 E-value=3.1 Score=39.30 Aligned_cols=186 Identities=16% Similarity=0.175 Sum_probs=107.3
Q ss_pred EEEEECCCCCceecCCCCCCceeeecCCCceEECC-eEEEEeecCCCcc----------cc-----------------cc
Q 046787 183 VQVFALKVGSWRNVTTGDTSLCRITVKTPQAYVNG-TLHWVGYDTESHH----------VA-----------------QG 234 (412)
Q Consensus 183 ~~vyss~t~~Wr~~~~~~~p~~~~~~~~~~v~~~G-~lywl~~~~~~~~----------~~-----------------~~ 234 (412)
++.|++.+++|..+++ ..|.. .....++.+++ .+|+.+....... +. ++
T Consensus 115 ~Y~y~p~~nsW~kl~t-~sP~g--l~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~d 191 (381)
T COG3055 115 AYRYDPSTNSWHKLDT-RSPTG--LVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAED 191 (381)
T ss_pred eEEecCCCChhheecc-ccccc--cccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHH
Confidence 8999999999999964 34442 34445566676 8888876433110 00 11
Q ss_pred ccceeEEEEEECCCceEEEec-CCCCcccccccccccceeeEEEeCCeEEEEEEccccCCCCCCCcEEEEEEeecCCCcc
Q 046787 235 IQRRLVLLAFDLREEVFKELN-VPDELKTDELAYGREQKLFIGALDQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGES 313 (412)
Q Consensus 235 ~~~~~~il~fD~~~e~~~~i~-~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~~~~l~iW~l~~~~~~~~ 313 (412)
.-....+++||+.+++|+..- .|-..... ..++..+++|.++...- ...-++-.+|+.+-.+....
T Consensus 192 y~~n~ev~sy~p~~n~W~~~G~~pf~~~aG---------sa~~~~~n~~~lInGEi----KpGLRt~~~k~~~~~~~~~~ 258 (381)
T COG3055 192 YFFNKEVLSYDPSTNQWRNLGENPFYGNAG---------SAVVIKGNKLTLINGEI----KPGLRTAEVKQADFGGDNLK 258 (381)
T ss_pred hcccccccccccccchhhhcCcCcccCccC---------cceeecCCeEEEEccee----cCCccccceeEEEeccCcee
Confidence 112356899999999999874 55433211 23344566788887664 23356667777764445678
Q ss_pred eeEEEEeeccCCc--cccE-EEE-ecCCEEEEEE-------------------------cCCeEEEEECCCCcEEEEE-E
Q 046787 314 WTKQFKIDLRLGL--GKMA-GLR-RNGEMLLVTR-------------------------YNEELVSFNTVNRKMQKLG-I 363 (412)
Q Consensus 314 W~~~~~i~~~~~~--~~p~-~~~-~~g~~ill~~-------------------------~~~~l~~yd~~t~~~~~v~-~ 363 (412)
|.+.-.++.+..- +... ++. ...+.+++.. ...+++.+| ++.|+.+. +
T Consensus 259 w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeL 336 (381)
T COG3055 259 WLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGEL 336 (381)
T ss_pred eeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeeccc
Confidence 9998655542111 1111 111 1113333321 123477777 78888884 3
Q ss_pred ecccceEEEeeeeecceeccccc
Q 046787 364 YGETWSFFLDTYVESLVLMQRIN 386 (412)
Q Consensus 364 ~~~~~~~~~~~y~~slv~~~~~~ 386 (412)
+.-..+-....|-+.+..++-..
T Consensus 337 p~~l~YG~s~~~nn~vl~IGGE~ 359 (381)
T COG3055 337 PQGLAYGVSLSYNNKVLLIGGET 359 (381)
T ss_pred CCCccceEEEecCCcEEEEcccc
Confidence 32233445677778877776443
No 46
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=90.59 E-value=18 Score=35.33 Aligned_cols=140 Identities=11% Similarity=0.152 Sum_probs=74.1
Q ss_pred EEEEECCCC--CceecCCCCCCceeeecCCCceEECCeEEEEeecCCCccccccccceeEEEEEECCCce--EEE-ecCC
Q 046787 183 VQVFALKVG--SWRNVTTGDTSLCRITVKTPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEV--FKE-LNVP 257 (412)
Q Consensus 183 ~~vyss~t~--~Wr~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~--~~~-i~~P 257 (412)
+.-++..|+ .|+.-. ..|.........++..+|.+|+...+ ..+.++|..+.+ |+. +..|
T Consensus 172 l~ald~~tG~~~W~~~~--~~~~~~~~~~~sP~v~~~~v~~~~~~-------------g~v~a~d~~~G~~~W~~~~~~~ 236 (394)
T PRK11138 172 LQALNESDGAVKWTVNL--DVPSLTLRGESAPATAFGGAIVGGDN-------------GRVSAVLMEQGQLIWQQRISQP 236 (394)
T ss_pred EEEEEccCCCEeeeecC--CCCcccccCCCCCEEECCEEEEEcCC-------------CEEEEEEccCChhhheeccccC
Confidence 677777777 588762 22211111234566678888876543 358899987654 543 2233
Q ss_pred CCccc-ccccccccceeeEEEeCCeEEEEEEccccCCCCCCCcEEEEEEeecCCCcceeEEEEeeccCCccccEEEEecC
Q 046787 258 DELKT-DELAYGREQKLFIGALDQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQFKIDLRLGLGKMAGLRRNG 336 (412)
Q Consensus 258 ~~~~~-~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~g 336 (412)
..... .... .....-+..+|.|++.... . .+..++-...+..|.+.. .. ...| ..++
T Consensus 237 ~~~~~~~~~~---~~~~sP~v~~~~vy~~~~~---------g--~l~ald~~tG~~~W~~~~--~~---~~~~---~~~~ 294 (394)
T PRK11138 237 TGATEIDRLV---DVDTTPVVVGGVVYALAYN---------G--NLVALDLRSGQIVWKREY--GS---VNDF---AVDG 294 (394)
T ss_pred CCccchhccc---ccCCCcEEECCEEEEEEcC---------C--eEEEEECCCCCEEEeecC--CC---ccCc---EEEC
Confidence 21110 0000 0001223457777775533 2 244444222244676532 10 1112 1245
Q ss_pred CEEEEEEcCCeEEEEECCCCcEE
Q 046787 337 EMLLVTRYNEELVSFNTVNRKMQ 359 (412)
Q Consensus 337 ~~ill~~~~~~l~~yd~~t~~~~ 359 (412)
+.||+...+++++.+|.++++..
T Consensus 295 ~~vy~~~~~g~l~ald~~tG~~~ 317 (394)
T PRK11138 295 GRIYLVDQNDRVYALDTRGGVEL 317 (394)
T ss_pred CEEEEEcCCCeEEEEECCCCcEE
Confidence 78888888889999999988753
No 47
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=90.57 E-value=5.9 Score=35.88 Aligned_cols=164 Identities=12% Similarity=0.057 Sum_probs=86.6
Q ss_pred EEEEECCCCCceecCCCCCCceeeecCCCceEECCeEEEEeecCCCccccccccceeEEEEEECCC----ceEEEecCCC
Q 046787 183 VQVFALKVGSWRNVTTGDTSLCRITVKTPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLRE----EVFKELNVPD 258 (412)
Q Consensus 183 ~~vyss~t~~Wr~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~----e~~~~i~~P~ 258 (412)
..+|++.|+++|.+.. .. -..+....+.-||.+.-.++.... ...+-.|++.+ ..|... |.
T Consensus 48 s~~yD~~tn~~rpl~v---~t-d~FCSgg~~L~dG~ll~tGG~~~G---------~~~ir~~~p~~~~~~~~w~e~--~~ 112 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTV---QT-DTFCSGGAFLPDGRLLQTGGDNDG---------NKAIRIFTPCTSDGTCDWTES--PN 112 (243)
T ss_pred EEEEecCCCcEEeccC---CC-CCcccCcCCCCCCCEEEeCCCCcc---------ccceEEEecCCCCCCCCceEC--cc
Confidence 7899999999999843 22 122444556678988877766442 14567788754 445443 22
Q ss_pred CcccccccccccceeeEEEe-CCeEEEEEEccccCCCCCCCcEEEEEEeecCC-CcceeEEEEee-ccCCccccEEE-Ee
Q 046787 259 ELKTDELAYGREQKLFIGAL-DQKLALMHYYTQWYNSPSYDGCCIWMMKEYGL-GESWTKQFKID-LRLGLGKMAGL-RR 334 (412)
Q Consensus 259 ~~~~~~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~~~~l~iW~l~~~~~-~~~W~~~~~i~-~~~~~~~p~~~-~~ 334 (412)
...... +| .....+ ||++.+++... ..+++.|=-+.... ...|....... .....-.|+.+ .+
T Consensus 113 ~m~~~R-WY-----pT~~~L~DG~vlIvGG~~-------~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llP 179 (243)
T PF07250_consen 113 DMQSGR-WY-----PTATTLPDGRVLIVGGSN-------NPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLP 179 (243)
T ss_pred cccCCC-cc-----ccceECCCCCEEEEeCcC-------CCcccccCCccCCCCceeeecchhhhccCccccCceEEEcC
Confidence 221111 11 344444 89999998875 45566654322110 11121111111 00111256544 45
Q ss_pred cCCEEEEEEcCCeEEEEECCCCcE-EEEE-EecccceEEEeeeeecc
Q 046787 335 NGEMLLVTRYNEELVSFNTVNRKM-QKLG-IYGETWSFFLDTYVESL 379 (412)
Q Consensus 335 ~g~~ill~~~~~~l~~yd~~t~~~-~~v~-~~~~~~~~~~~~y~~sl 379 (412)
+| .||+..+. +-..||.+++++ +.+. +++ ..+.++...+-
T Consensus 180 dG-~lFi~an~-~s~i~d~~~n~v~~~lP~lPg---~~R~YP~sgss 221 (243)
T PF07250_consen 180 DG-NLFIFANR-GSIIYDYKTNTVVRTLPDLPG---GPRNYPASGSS 221 (243)
T ss_pred CC-CEEEEEcC-CcEEEeCCCCeEEeeCCCCCC---CceecCCCcce
Confidence 75 45555444 377889999976 4542 333 23455555553
No 48
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=90.41 E-value=9.5 Score=37.21 Aligned_cols=103 Identities=15% Similarity=0.146 Sum_probs=65.4
Q ss_pred eEEEEEECCCceEEEecCCCCcccccccccccceeeEEEeCCeEEEEEEccccCCCCCCCcEEEEEEeecCCCcceeEEE
Q 046787 239 LVLLAFDLREEVFKELNVPDELKTDELAYGREQKLFIGALDQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQF 318 (412)
Q Consensus 239 ~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~ 318 (412)
.++.+||+.+.+...+..|.......+.+ +. +.-++...++... ...|.+=..+- .+|...+
T Consensus 280 ky~ysyDle~ak~~k~~~~~g~e~~~~e~-----Fe-VShd~~fia~~G~--------~G~I~lLhakT----~eli~s~ 341 (514)
T KOG2055|consen 280 KYLYSYDLETAKVTKLKPPYGVEEKSMER-----FE-VSHDSNFIAIAGN--------NGHIHLLHAKT----KELITSF 341 (514)
T ss_pred eEEEEeeccccccccccCCCCcccchhhe-----eE-ecCCCCeEEEccc--------CceEEeehhhh----hhhhhee
Confidence 68999999999999998887664222220 11 1224443333333 24555544442 4677777
Q ss_pred EeeccCCccccEEEEecCCEEEEEEcCCeEEEEECCCCcEEEEE
Q 046787 319 KIDLRLGLGKMAGLRRNGEMLLVTRYNEELVSFNTVNRKMQKLG 362 (412)
Q Consensus 319 ~i~~~~~~~~p~~~~~~g~~ill~~~~~~l~~yd~~t~~~~~v~ 362 (412)
.|+ +.-.-+.+..+|..|+....+++++.+|++.+......
T Consensus 342 Kie---G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf 382 (514)
T KOG2055|consen 342 KIE---GVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRF 382 (514)
T ss_pred eec---cEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEE
Confidence 665 22234566678888888888889999999999765543
No 49
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=90.10 E-value=3.7 Score=33.22 Aligned_cols=83 Identities=18% Similarity=0.259 Sum_probs=54.2
Q ss_pred EEEEEECCCc--eEEEecCCCCcccccccc---c-ccceeeEEEeCCeEEEEEEccccCCC--CCCCcEEEEEEeec-CC
Q 046787 240 VLLAFDLREE--VFKELNVPDELKTDELAY---G-REQKLFIGALDQKLALMHYYTQWYNS--PSYDGCCIWMMKEY-GL 310 (412)
Q Consensus 240 ~il~fD~~~e--~~~~i~~P~~~~~~~~~~---~-~~~~~~l~~~~g~L~l~~~~~~~~~~--~~~~~l~iW~l~~~-~~ 310 (412)
.||.+|+-++ .++-|+||.......... + .+....+++.+|+|-++......... ....++.+|+|... +.
T Consensus 7 GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~~ 86 (131)
T PF07762_consen 7 GILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEGS 86 (131)
T ss_pred CEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCCC
Confidence 4888999765 677889988653111100 0 01114678889999888876522111 24568999999974 23
Q ss_pred CcceeEEEEeec
Q 046787 311 GESWTKQFKIDL 322 (412)
Q Consensus 311 ~~~W~~~~~i~~ 322 (412)
...|.+-++++.
T Consensus 87 ~~~W~~d~~v~~ 98 (131)
T PF07762_consen 87 SWEWKKDCEVDL 98 (131)
T ss_pred CCCEEEeEEEEh
Confidence 578999999886
No 50
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=89.13 E-value=16 Score=32.67 Aligned_cols=130 Identities=15% Similarity=0.223 Sum_probs=76.8
Q ss_pred EEEEECCCC----CceecCCCCCCceeeecCCCceEECCeEEEEeecCCCccccccccceeEEEEEECCCceEEEecCCC
Q 046787 183 VQVFALKVG----SWRNVTTGDTSLCRITVKTPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKELNVPD 258 (412)
Q Consensus 183 ~~vyss~t~----~Wr~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~~P~ 258 (412)
+.+++..|+ .||.... .... ......++|.+.|.+ + ..|-++|-.+..+.+|+.=.
T Consensus 83 v~vwDV~TGkv~Rr~rgH~a-qVNt-V~fNeesSVv~Sgsf-------D-----------~s~r~wDCRS~s~ePiQild 142 (307)
T KOG0316|consen 83 VQVWDVNTGKVDRRFRGHLA-QVNT-VRFNEESSVVASGSF-------D-----------SSVRLWDCRSRSFEPIQILD 142 (307)
T ss_pred EEEEEcccCeeeeecccccc-eeeE-EEecCcceEEEeccc-------c-----------ceeEEEEcccCCCCccchhh
Confidence 899999987 5776621 2221 222333445444431 1 46888999998888887644
Q ss_pred CcccccccccccceeeEEEeCCeEEEEEEccccCCCCCCCcEEEEEEeecCCCcceeEEEEeeccCCcccc---EEEEec
Q 046787 259 ELKTDELAYGREQKLFIGALDQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQFKIDLRLGLGKM---AGLRRN 335 (412)
Q Consensus 259 ~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~p---~~~~~~ 335 (412)
... ++ ..-+...+...+.+..+ .+++.+-+... ++. .++++.| +.+.++
T Consensus 143 ea~-D~--------V~Si~v~~heIvaGS~D--------GtvRtydiR~G----------~l~-sDy~g~pit~vs~s~d 194 (307)
T KOG0316|consen 143 EAK-DG--------VSSIDVAEHEIVAGSVD--------GTVRTYDIRKG----------TLS-SDYFGHPITSVSFSKD 194 (307)
T ss_pred hhc-Cc--------eeEEEecccEEEeeccC--------CcEEEEEeecc----------eee-hhhcCCcceeEEecCC
Confidence 332 22 22344556666655554 55555555431 111 2445555 455678
Q ss_pred CCEEEEEEcCCeEEEEECCCCcEEE
Q 046787 336 GEMLLVTRYNEELVSFNTVNRKMQK 360 (412)
Q Consensus 336 g~~ill~~~~~~l~~yd~~t~~~~~ 360 (412)
|+..+...-+..+-..|-+|+++-+
T Consensus 195 ~nc~La~~l~stlrLlDk~tGklL~ 219 (307)
T KOG0316|consen 195 GNCSLASSLDSTLRLLDKETGKLLK 219 (307)
T ss_pred CCEEEEeeccceeeecccchhHHHH
Confidence 8888887777778888888887743
No 51
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=88.69 E-value=19 Score=34.60 Aligned_cols=132 Identities=11% Similarity=0.128 Sum_probs=71.9
Q ss_pred EEEEeeccEEEEeeeccCCCceeEEEEcCcCcceeecCCCCcCCCcceEEEEeeeCCCCCEEEEEEEEEecccccccCCC
Q 046787 100 NVIGICYGLVCLLDYHQKGLSKSVIVWNPSLESCVRIMFKFTAANFESVHGFGFDPKSVDYKVVRIVVRDHFIIGVRDAP 179 (412)
Q Consensus 100 ~i~~s~~GLlll~~~~~~~~~~~~~V~NP~T~~~~~LP~p~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~ 179 (412)
.+.+-.+.-|++.+. ....+|+++.|+....+|...........+..| + +|.++....... .....
T Consensus 70 ~F~al~gskIv~~d~-----~~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG-----~--~LY~m~~~~~~~--~~~~~ 135 (342)
T PF07893_consen 70 DFFALHGSKIVAVDQ-----SGRTLVYDTDTRAVATGPRLHSPKRCPISVSVG-----D--KLYAMDRSPFPE--PAGRP 135 (342)
T ss_pred EEEEecCCeEEEEcC-----CCCeEEEECCCCeEeccCCCCCCCcceEEEEeC-----C--eEEEeeccCccc--cccCc
Confidence 344444555555544 356899999999999888833221112222222 1 244543321100 00000
Q ss_pred CC-eEEEE--E--------CCCCCceecCCCCCCceeee------cCCCceEECCeEEEEeecCCCccccccccceeEEE
Q 046787 180 RP-VVQVF--A--------LKVGSWRNVTTGDTSLCRIT------VKTPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLL 242 (412)
Q Consensus 180 ~~-~~~vy--s--------s~t~~Wr~~~~~~~p~~~~~------~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il 242 (412)
.. ..|++ . ..+.+|+.+ +.+|+.... ....+|+ +|.--|+...... ..-.
T Consensus 136 ~~~~FE~l~~~~~~~~~~~~~~w~W~~L--P~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~----------~GTy 202 (342)
T PF07893_consen 136 DFPCFEALVYRPPPDDPSPEESWSWRSL--PPPPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGRR----------WGTY 202 (342)
T ss_pred cceeEEEeccccccccccCCCcceEEcC--CCCCccccCCcccceEEEEEEe-cCCeEEEEecCCc----------eEEE
Confidence 00 23444 3 223478888 566653322 4455666 8888888665310 2588
Q ss_pred EEECCCceEEEe---cCCC
Q 046787 243 AFDLREEVFKEL---NVPD 258 (412)
Q Consensus 243 ~fD~~~e~~~~i---~~P~ 258 (412)
+||..+.+|+.. .||-
T Consensus 203 sfDt~~~~W~~~GdW~LPF 221 (342)
T PF07893_consen 203 SFDTESHEWRKHGDWMLPF 221 (342)
T ss_pred EEEcCCcceeeccceecCc
Confidence 999999999986 5665
No 52
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=88.41 E-value=1 Score=29.33 Aligned_cols=38 Identities=16% Similarity=0.217 Sum_probs=23.1
Q ss_pred CceEE-CCeEEEEeecCCCccccccccceeEEEEEECCCceEEEe
Q 046787 211 PQAYV-NGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKEL 254 (412)
Q Consensus 211 ~~v~~-~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i 254 (412)
.++.+ ++.+|..++..... .....+..||+.+++|+.+
T Consensus 6 ~~~~~~~~~i~v~GG~~~~~------~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 6 SAVSIGDNSIYVFGGRDSSG------SPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp EEEEE-TTEEEEE--EEE-T------EE---EEEEETTTTEEEE-
T ss_pred EEEEEeCCeEEEECCCCCCC------cccCCEEEEECCCCEEEEC
Confidence 44556 58999888765321 0225688999999999998
No 53
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=88.20 E-value=19 Score=32.38 Aligned_cols=203 Identities=14% Similarity=0.118 Sum_probs=105.7
Q ss_pred EeeccEEEEeeeccCCCceeEEEEcCcCcceeecCCCCcCCCcceEEEEeeeCCCCCEEEEEEEEEecccccccCCCCCe
Q 046787 103 GICYGLVCLLDYHQKGLSKSVIVWNPSLESCVRIMFKFTAANFESVHGFGFDPKSVDYKVVRIVVRDHFIIGVRDAPRPV 182 (412)
Q Consensus 103 ~s~~GLlll~~~~~~~~~~~~~V~NP~T~~~~~LP~p~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~ 182 (412)
...+|-|++.+.. ...++.++|.+++...++.+. ..|+.++...+.+ +++. ...
T Consensus 8 d~~~g~l~~~D~~----~~~i~~~~~~~~~~~~~~~~~-------~~G~~~~~~~g~l-~v~~--~~~------------ 61 (246)
T PF08450_consen 8 DPRDGRLYWVDIP----GGRIYRVDPDTGEVEVIDLPG-------PNGMAFDRPDGRL-YVAD--SGG------------ 61 (246)
T ss_dssp ETTTTEEEEEETT----TTEEEEEETTTTEEEEEESSS-------EEEEEEECTTSEE-EEEE--TTC------------
T ss_pred ECCCCEEEEEEcC----CCEEEEEECCCCeEEEEecCC-------CceEEEEccCCEE-EEEE--cCc------------
Confidence 4446666666652 478899999999876655442 3466666322222 2221 111
Q ss_pred EEEEECCCCCceecCCC--CC-CceeeecCCCceEECCeEEEEeecCCCccccccccceeEEEEEECCCceEEEe----c
Q 046787 183 VQVFALKVGSWRNVTTG--DT-SLCRITVKTPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKEL----N 255 (412)
Q Consensus 183 ~~vyss~t~~Wr~~~~~--~~-p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i----~ 255 (412)
..+++..++.++.+... .. +. .....-.+--+|.+|.-......... .....|..++.. .+.+.+ .
T Consensus 62 ~~~~d~~~g~~~~~~~~~~~~~~~--~~~ND~~vd~~G~ly~t~~~~~~~~~----~~~g~v~~~~~~-~~~~~~~~~~~ 134 (246)
T PF08450_consen 62 IAVVDPDTGKVTVLADLPDGGVPF--NRPNDVAVDPDGNLYVTDSGGGGASG----IDPGSVYRIDPD-GKVTVVADGLG 134 (246)
T ss_dssp EEEEETTTTEEEEEEEEETTCSCT--EEEEEEEE-TTS-EEEEEECCBCTTC----GGSEEEEEEETT-SEEEEEEEEES
T ss_pred eEEEecCCCcEEEEeeccCCCccc--CCCceEEEcCCCCEEEEecCCCcccc----ccccceEEECCC-CeEEEEecCcc
Confidence 56678889888877321 11 21 11111233447887766544321110 011579999999 544433 2
Q ss_pred CCCCcccccccccccceeeEEEe-CCe-EEEEEEccccCCCCCCCcEEEEEEeecCCCcceeEEEEe-eccCCcccc--E
Q 046787 256 VPDELKTDELAYGREQKLFIGAL-DQK-LALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQFKI-DLRLGLGKM--A 330 (412)
Q Consensus 256 ~P~~~~~~~~~~~~~~~~~l~~~-~g~-L~l~~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i-~~~~~~~~p--~ 330 (412)
.|. .|+.. +|+ |++.... .-.||.++-......+.....+ +.....+.| +
T Consensus 135 ~pN---------------Gi~~s~dg~~lyv~ds~----------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~ 189 (246)
T PF08450_consen 135 FPN---------------GIAFSPDGKTLYVADSF----------NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGL 189 (246)
T ss_dssp SEE---------------EEEEETTSSEEEEEETT----------TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEE
T ss_pred ccc---------------ceEECCcchheeecccc----------cceeEEEeccccccceeeeeeEEEcCCCCcCCCcc
Confidence 221 23322 555 5554332 2247777743223335544333 333333334 5
Q ss_pred EEEecCCEEEEE-EcCCeEEEEECCCCcEEEEEEe
Q 046787 331 GLRRNGEMLLVT-RYNEELVSFNTVNRKMQKLGIY 364 (412)
Q Consensus 331 ~~~~~g~~ill~-~~~~~l~~yd~~t~~~~~v~~~ 364 (412)
++..+|. |++. ...++++.||++.+....|.++
T Consensus 190 ~vD~~G~-l~va~~~~~~I~~~~p~G~~~~~i~~p 223 (246)
T PF08450_consen 190 AVDSDGN-LWVADWGGGRIVVFDPDGKLLREIELP 223 (246)
T ss_dssp EEBTTS--EEEEEETTTEEEEEETTSCEEEEEE-S
T ss_pred eEcCCCC-EEEEEcCCCEEEEECCCccEEEEEcCC
Confidence 5566655 5554 4577899999997777788775
No 54
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=88.08 E-value=24 Score=33.38 Aligned_cols=108 Identities=12% Similarity=0.110 Sum_probs=68.6
Q ss_pred eEEEEEECCCceEEEe---cCCCCcccccccccccceeeEEEeCCeEEEEEEccccCCCCCCCcEEEEEEeecCCCccee
Q 046787 239 LVLLAFDLREEVFKEL---NVPDELKTDELAYGREQKLFIGALDQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWT 315 (412)
Q Consensus 239 ~~il~fD~~~e~~~~i---~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~ 315 (412)
+.|..||+++...... .+++... .| .-+.--+|+++.+...- ..++.+|..+.. ..+-.
T Consensus 167 Dri~~y~~~dg~L~~~~~~~v~~G~G-------PR--Hi~FHpn~k~aY~v~EL-------~stV~v~~y~~~--~g~~~ 228 (346)
T COG2706 167 DRIFLYDLDDGKLTPADPAEVKPGAG-------PR--HIVFHPNGKYAYLVNEL-------NSTVDVLEYNPA--VGKFE 228 (346)
T ss_pred ceEEEEEcccCccccccccccCCCCC-------cc--eEEEcCCCcEEEEEecc-------CCEEEEEEEcCC--CceEE
Confidence 6777777776655542 2333221 11 22233489998888776 689999998863 34566
Q ss_pred EEEEeec-cCCcc-----ccEEEEecCCEEEEEEcCC---eEEEEECCCCcEEEEEEe
Q 046787 316 KQFKIDL-RLGLG-----KMAGLRRNGEMLLVTRYNE---ELVSFNTVNRKMQKLGIY 364 (412)
Q Consensus 316 ~~~~i~~-~~~~~-----~p~~~~~~g~~ill~~~~~---~l~~yd~~t~~~~~v~~~ 364 (412)
.+.+|+. +..+. .-+.+..+|..++...... .+|..|..+++++-+...
T Consensus 229 ~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~ 286 (346)
T COG2706 229 ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGIT 286 (346)
T ss_pred EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEe
Confidence 6666664 33332 4567778988888874422 267778888888877653
No 55
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=87.19 E-value=31 Score=33.66 Aligned_cols=108 Identities=19% Similarity=0.174 Sum_probs=59.2
Q ss_pred CCceEECCeEEEEeecCCCccccccccceeEEEEEECCCc--eEEEecCCCCcccccccccccceeeEEEeCCeEEEEEE
Q 046787 210 TPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREE--VFKELNVPDELKTDELAYGREQKLFIGALDQKLALMHY 287 (412)
Q Consensus 210 ~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e--~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~ 287 (412)
..++..+|.+|..... ..+.++|+.+. .|+. +++.. ..++..+|+|++...
T Consensus 250 ~sP~v~~~~vy~~~~~-------------g~l~ald~~tG~~~W~~-~~~~~-------------~~~~~~~~~vy~~~~ 302 (394)
T PRK11138 250 TTPVVVGGVVYALAYN-------------GNLVALDLRSGQIVWKR-EYGSV-------------NDFAVDGGRIYLVDQ 302 (394)
T ss_pred CCcEEECCEEEEEEcC-------------CeEEEEECCCCCEEEee-cCCCc-------------cCcEEECCEEEEEcC
Confidence 4567789999987654 35899999765 4654 22110 123444666666543
Q ss_pred ccccCCCCCCCcEEEEEEeecCCCcceeEEEEeeccCCccccEEEEecCCEEEEEEcCCeEEEEECCCCcEEE
Q 046787 288 YTQWYNSPSYDGCCIWMMKEYGLGESWTKQFKIDLRLGLGKMAGLRRNGEMLLVTRYNEELVSFNTVNRKMQK 360 (412)
Q Consensus 288 ~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~g~~ill~~~~~~l~~yd~~t~~~~~ 360 (412)
.. . +..++-...+..|.... +. ......|+.. ++.|++...++.++.+|.++++...
T Consensus 303 ~g---------~--l~ald~~tG~~~W~~~~-~~-~~~~~sp~v~---~g~l~v~~~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 303 ND---------R--VYALDTRGGVELWSQSD-LL-HRLLTAPVLY---NGYLVVGDSEGYLHWINREDGRFVA 359 (394)
T ss_pred CC---------e--EEEEECCCCcEEEcccc-cC-CCcccCCEEE---CCEEEEEeCCCEEEEEECCCCCEEE
Confidence 21 1 22222111123453311 00 0112234432 4688888888889999999988654
No 56
>PF13964 Kelch_6: Kelch motif
Probab=86.83 E-value=1.7 Score=28.34 Aligned_cols=36 Identities=11% Similarity=0.130 Sum_probs=23.8
Q ss_pred EeeccEEEEeeeccC--CCceeEEEEcCcCcceeecCC
Q 046787 103 GICYGLVCLLDYHQK--GLSKSVIVWNPSLESCVRIMF 138 (412)
Q Consensus 103 ~s~~GLlll~~~~~~--~~~~~~~V~NP~T~~~~~LP~ 138 (412)
.+.+|-|.+...... .....+.++||.|++|..||+
T Consensus 8 v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 45 (50)
T PF13964_consen 8 VVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPP 45 (50)
T ss_pred EEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCC
Confidence 344455544433211 224788999999999999998
No 57
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=86.66 E-value=6 Score=36.20 Aligned_cols=125 Identities=14% Similarity=0.105 Sum_probs=71.3
Q ss_pred EEEEeeccEEEEeeeccCCCceeEEEEcCcCcceeecCCCCcCCCcceEEEEeeeCCCCCEEEEEEEEEecccccccCCC
Q 046787 100 NVIGICYGLVCLLDYHQKGLSKSVIVWNPSLESCVRIMFKFTAANFESVHGFGFDPKSVDYKVVRIVVRDHFIIGVRDAP 179 (412)
Q Consensus 100 ~i~~s~~GLlll~~~~~~~~~~~~~V~NP~T~~~~~LP~p~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~ 179 (412)
-|++.-+|-|-....- .+-+...||.++.--.+|+|..... ..-...-|+- .-+.+.....
T Consensus 193 Gi~atpdGsvwyasla----gnaiaridp~~~~aev~p~P~~~~~--gsRriwsdpi----g~~wittwg~--------- 253 (353)
T COG4257 193 GICATPDGSVWYASLA----GNAIARIDPFAGHAEVVPQPNALKA--GSRRIWSDPI----GRAWITTWGT--------- 253 (353)
T ss_pred ceEECCCCcEEEEecc----ccceEEcccccCCcceecCCCcccc--cccccccCcc----CcEEEeccCC---------
Confidence 3445555555444321 2456677999997777887654221 1112222331 1122221111
Q ss_pred CCeEEEEECCCCCceecCCCCCCceeeecCCCceEECC-eEEEEeecCCCccccccccceeEEEEEECCCceEEEecCCC
Q 046787 180 RPVVQVFALKVGSWRNVTTGDTSLCRITVKTPQAYVNG-TLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKELNVPD 258 (412)
Q Consensus 180 ~~~~~vyss~t~~Wr~~~~~~~p~~~~~~~~~~v~~~G-~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~~P~ 258 (412)
..++.|+..+.+|++.. +|.. ......+++|. -.-|+..-.. ..|..||+.+++|+.+++|.
T Consensus 254 -g~l~rfdPs~~sW~eyp---LPgs--~arpys~rVD~~grVW~sea~a-----------gai~rfdpeta~ftv~p~pr 316 (353)
T COG4257 254 -GSLHRFDPSVTSWIEYP---LPGS--KARPYSMRVDRHGRVWLSEADA-----------GAIGRFDPETARFTVLPIPR 316 (353)
T ss_pred -ceeeEeCcccccceeee---CCCC--CCCcceeeeccCCcEEeecccc-----------CceeecCcccceEEEecCCC
Confidence 22889999999999872 3321 12223455553 3457765443 67999999999999999886
Q ss_pred Cc
Q 046787 259 EL 260 (412)
Q Consensus 259 ~~ 260 (412)
..
T Consensus 317 ~n 318 (353)
T COG4257 317 PN 318 (353)
T ss_pred CC
Confidence 44
No 58
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=86.51 E-value=11 Score=35.84 Aligned_cols=126 Identities=17% Similarity=0.196 Sum_probs=67.7
Q ss_pred CCeEEEEeecCCCccccccccceeEEEEEECCCceEEEe---cCCCCc-ccccccccccceeeEEEeCCeEEEEEEcccc
Q 046787 216 NGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKEL---NVPDEL-KTDELAYGREQKLFIGALDQKLALMHYYTQW 291 (412)
Q Consensus 216 ~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i---~~P~~~-~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~ 291 (412)
+|.+||++..+ .|...|++.+.-... ++-... ..++-.+|.-|...+-.-.++||++-... .
T Consensus 195 ~~~~~F~Sy~G-------------~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g-~ 260 (342)
T PF06433_consen 195 GGRLYFVSYEG-------------NVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQG-G 260 (342)
T ss_dssp TTEEEEEBTTS-------------EEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE---
T ss_pred CCeEEEEecCC-------------EEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCC-C
Confidence 36788888764 488888887754332 221111 11233333333333333478999876533 1
Q ss_pred CCCCCCCcEEEEEEeecCCCcceeEEEEeeccCCccccEEEEecCCEEEEEE--cCCeEEEEECCCCcEEE
Q 046787 292 YNSPSYDGCCIWMMKEYGLGESWTKQFKIDLRLGLGKMAGLRRNGEMLLVTR--YNEELVSFNTVNRKMQK 360 (412)
Q Consensus 292 ~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~g~~ill~~--~~~~l~~yd~~t~~~~~ 360 (412)
........=+||+++-. .=.++.+|++...+ .-+++..+..-+|+.. .++.+++||..|++...
T Consensus 261 ~gsHKdpgteVWv~D~~----t~krv~Ri~l~~~~-~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 261 EGSHKDPGTEVWVYDLK----THKRVARIPLEHPI-DSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp TT-TTS-EEEEEEEETT----TTEEEEEEEEEEEE-SEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred CCCccCCceEEEEEECC----CCeEEEEEeCCCcc-ceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 11122345689999952 23566777754322 1456676666565542 35679999999987643
No 59
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=83.40 E-value=48 Score=32.51 Aligned_cols=145 Identities=13% Similarity=0.110 Sum_probs=77.8
Q ss_pred EEEEECCCC-----CceecCCCCCCceeeecCCCceEECCeEEEEeecCCCccccccccceeEEEEEECCCce---EEEe
Q 046787 183 VQVFALKVG-----SWRNVTTGDTSLCRITVKTPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEV---FKEL 254 (412)
Q Consensus 183 ~~vyss~t~-----~Wr~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~---~~~i 254 (412)
+.+.+...+ .|+.+.. ..+. .....-..++.+|+++.... + ...|++.|+.+.. |..+
T Consensus 254 v~~~d~~~~~~~~~~~~~l~~-~~~~----~~~~v~~~~~~~yi~Tn~~a-~--------~~~l~~~~l~~~~~~~~~~~ 319 (414)
T PF02897_consen 254 VYLLDLDDGGSPDAKPKLLSP-REDG----VEYYVDHHGDRLYILTNDDA-P--------NGRLVAVDLADPSPAEWWTV 319 (414)
T ss_dssp EEEEECCCTTTSS-SEEEEEE-SSSS-----EEEEEEETTEEEEEE-TT--T--------T-EEEEEETTSTSGGGEEEE
T ss_pred EEEEeccccCCCcCCcEEEeC-CCCc----eEEEEEccCCEEEEeeCCCC-C--------CcEEEEecccccccccceeE
Confidence 777777764 6777621 1111 00112245778888876432 2 2789999998765 6644
Q ss_pred cCCCCcccccccccccceeeEEEeCCeEEEEEEccccCCCCCCCcEEEEEEeecCCCcceeEEEEeeccCCccccEEE--
Q 046787 255 NVPDELKTDELAYGREQKLFIGALDQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQFKIDLRLGLGKMAGL-- 332 (412)
Q Consensus 255 ~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~-- 332 (412)
-.|+... ..- ..+...++.|.+....+ ..-.|.+++-. ..|... .+.++. .+...++
T Consensus 320 l~~~~~~--~~l------~~~~~~~~~Lvl~~~~~--------~~~~l~v~~~~---~~~~~~-~~~~p~-~g~v~~~~~ 378 (414)
T PF02897_consen 320 LIPEDED--VSL------EDVSLFKDYLVLSYREN--------GSSRLRVYDLD---DGKESR-EIPLPE-AGSVSGVSG 378 (414)
T ss_dssp EE--SSS--EEE------EEEEEETTEEEEEEEET--------TEEEEEEEETT----TEEEE-EEESSS-SSEEEEEES
T ss_pred EcCCCCc--eeE------EEEEEECCEEEEEEEEC--------CccEEEEEECC---CCcEEe-eecCCc-ceEEeccCC
Confidence 3333221 011 24455688888777664 34445555531 134443 344322 2222233
Q ss_pred EecCCEEEEEEc----CCeEEEEECCCCcEEEEE
Q 046787 333 RRNGEMLLVTRY----NEELVSFNTVNRKMQKLG 362 (412)
Q Consensus 333 ~~~g~~ill~~~----~~~l~~yd~~t~~~~~v~ 362 (412)
..+++.+++... ...++.||+++++.+.+.
T Consensus 379 ~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 379 DFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp -TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred CCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 235677877632 467999999999998874
No 60
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=83.07 E-value=44 Score=31.93 Aligned_cols=118 Identities=14% Similarity=0.189 Sum_probs=71.3
Q ss_pred CCeEEEEeecCCCccccccccceeEEEEEECCCce--EEE---ecCCCCcccccccccccceeeEEE-eCCeEEEEEEcc
Q 046787 216 NGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEV--FKE---LNVPDELKTDELAYGREQKLFIGA-LDQKLALMHYYT 289 (412)
Q Consensus 216 ~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~--~~~---i~~P~~~~~~~~~~~~~~~~~l~~-~~g~L~l~~~~~ 289 (412)
+|...|....+. +.|..|++..+. +.. +.+|..... ..++. -+|+..++....
T Consensus 154 dg~~v~v~dlG~-----------D~v~~~~~~~~~~~l~~~~~~~~~~G~GP----------Rh~~f~pdg~~~Yv~~e~ 212 (345)
T PF10282_consen 154 DGRFVYVPDLGA-----------DRVYVYDIDDDTGKLTPVDSIKVPPGSGP----------RHLAFSPDGKYAYVVNEL 212 (345)
T ss_dssp TSSEEEEEETTT-----------TEEEEEEE-TTS-TEEEEEEEECSTTSSE----------EEEEE-TTSSEEEEEETT
T ss_pred CCCEEEEEecCC-----------CEEEEEEEeCCCceEEEeeccccccCCCC----------cEEEEcCCcCEEEEecCC
Confidence 576666665543 567888886655 533 456654431 12222 266655555554
Q ss_pred ccCCCCCCCcEEEEEEeecCCCcceeEEEEeecc-CCc-----cccEEEEecCCEEEEEEc-CCeEEEEEC--CCCcEEE
Q 046787 290 QWYNSPSYDGCCIWMMKEYGLGESWTKQFKIDLR-LGL-----GKMAGLRRNGEMLLVTRY-NEELVSFNT--VNRKMQK 360 (412)
Q Consensus 290 ~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~-~~~-----~~p~~~~~~g~~ill~~~-~~~l~~yd~--~t~~~~~ 360 (412)
..++.++.++. ....+....+++.. ... ..-+.+.++|..||+... .+.|..|++ .+++++.
T Consensus 213 -------s~~v~v~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~ 283 (345)
T PF10282_consen 213 -------SNTVSVFDYDP--SDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTL 283 (345)
T ss_dssp -------TTEEEEEEEET--TTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEE
T ss_pred -------CCcEEEEeecc--cCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEE
Confidence 57888887773 23467777777752 221 234667788999988753 556888887 5678888
Q ss_pred EEE
Q 046787 361 LGI 363 (412)
Q Consensus 361 v~~ 363 (412)
+..
T Consensus 284 ~~~ 286 (345)
T PF10282_consen 284 VQT 286 (345)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
No 61
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=82.00 E-value=0.42 Score=46.03 Aligned_cols=38 Identities=24% Similarity=0.423 Sum_probs=34.4
Q ss_pred CCCcHHHHHHHHccCCcccceeeeecchhhhhhhcCcc
Q 046787 3 DYVPEEVVAQILFRLPAKSVSEFRCVCKSWCALINDPT 40 (412)
Q Consensus 3 ~~LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~p~ 40 (412)
-.||.|++..||+.|..|++.|++.+||.|+-+..|..
T Consensus 73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~ 110 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGS 110 (483)
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc
Confidence 46999999999999999999999999999998876543
No 62
>smart00612 Kelch Kelch domain.
Probab=81.49 E-value=2.2 Score=26.89 Aligned_cols=19 Identities=16% Similarity=0.440 Sum_probs=16.1
Q ss_pred EEEEECCCCCceecCCCCCCc
Q 046787 183 VQVFALKVGSWRNVTTGDTSL 203 (412)
Q Consensus 183 ~~vyss~t~~Wr~~~~~~~p~ 203 (412)
+++|+.+++.|... +.++.
T Consensus 17 v~~yd~~~~~W~~~--~~~~~ 35 (47)
T smart00612 17 VEVYDPETNKWTPL--PSMPT 35 (47)
T ss_pred EEEECCCCCeEccC--CCCCC
Confidence 89999999999998 45554
No 63
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=79.89 E-value=41 Score=32.43 Aligned_cols=108 Identities=12% Similarity=0.114 Sum_probs=56.6
Q ss_pred CceEECCeEEEEeecCCCccccccccceeEEEEEECCCce--EEEecCCCCcccccccccccceeeEEEeCCeEEEEEEc
Q 046787 211 PQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEV--FKELNVPDELKTDELAYGREQKLFIGALDQKLALMHYY 288 (412)
Q Consensus 211 ~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~--~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~ 288 (412)
.++..+|.+|..... ..+.+||..+.+ |+ .+++.... ...+..++.+++....
T Consensus 60 ~p~v~~~~v~v~~~~-------------g~v~a~d~~tG~~~W~-~~~~~~~~-----------~~p~v~~~~v~v~~~~ 114 (377)
T TIGR03300 60 QPAVAGGKVYAADAD-------------GTVVALDAETGKRLWR-VDLDERLS-----------GGVGADGGLVFVGTEK 114 (377)
T ss_pred ceEEECCEEEEECCC-------------CeEEEEEccCCcEeee-ecCCCCcc-----------cceEEcCCEEEEEcCC
Confidence 456778888877654 358999986554 54 34443221 1223335555443221
Q ss_pred cccCCCCCCCcEEEEEEeecCCCcceeEEEEeeccCCccccEEEEecCCEEEEEEcCCeEEEEECCCCcEEE
Q 046787 289 TQWYNSPSYDGCCIWMMKEYGLGESWTKQFKIDLRLGLGKMAGLRRNGEMLLVTRYNEELVSFNTVNRKMQK 360 (412)
Q Consensus 289 ~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~g~~ill~~~~~~l~~yd~~t~~~~~ 360 (412)
.. +..++-...+..|.... . ......|+. .++.+++...++.++.+|.++++..+
T Consensus 115 ---------g~--l~ald~~tG~~~W~~~~--~-~~~~~~p~v---~~~~v~v~~~~g~l~a~d~~tG~~~W 169 (377)
T TIGR03300 115 ---------GE--VIALDAEDGKELWRAKL--S-SEVLSPPLV---ANGLVVVRTNDGRLTALDAATGERLW 169 (377)
T ss_pred ---------CE--EEEEECCCCcEeeeecc--C-ceeecCCEE---ECCEEEEECCCCeEEEEEcCCCceee
Confidence 22 33333211133454321 1 011122332 24678787777889999999887543
No 64
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=79.25 E-value=52 Score=30.20 Aligned_cols=112 Identities=17% Similarity=0.124 Sum_probs=69.2
Q ss_pred ECCeEEEEeecCCCccccccccceeEEEEEECCCceEE-EecCCCCcccccccccccceeeEEEeCCeEEEEEEccccCC
Q 046787 215 VNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFK-ELNVPDELKTDELAYGREQKLFIGALDQKLALMHYYTQWYN 293 (412)
Q Consensus 215 ~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~-~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~ 293 (412)
-+|.||=-++..+ +..|-.+|+.+++.. ..++|+... - -.++..+++|+.++...
T Consensus 54 ~~g~LyESTG~yG----------~S~l~~~d~~tg~~~~~~~l~~~~F----g------EGit~~~d~l~qLTWk~---- 109 (264)
T PF05096_consen 54 DDGTLYESTGLYG----------QSSLRKVDLETGKVLQSVPLPPRYF----G------EGITILGDKLYQLTWKE---- 109 (264)
T ss_dssp ETTEEEEEECSTT----------EEEEEEEETTTSSEEEEEE-TTT------E------EEEEEETTEEEEEESSS----
T ss_pred CCCEEEEeCCCCC----------cEEEEEEECCCCcEEEEEECCcccc----c------eeEEEECCEEEEEEecC----
Confidence 4677776665443 367999999998764 678987552 1 35788899999999875
Q ss_pred CCCCCcEEEEEEeecCCCcceeEEEEeeccCCccccEEEEecCCEEEEEEcCCeEEEEECCCCcE-EEEEE
Q 046787 294 SPSYDGCCIWMMKEYGLGESWTKQFKIDLRLGLGKMAGLRRNGEMLLVTRYNEELVSFNTVNRKM-QKLGI 363 (412)
Q Consensus 294 ~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~g~~ill~~~~~~l~~yd~~t~~~-~~v~~ 363 (412)
...-++-.+ ...+..++.++ +..=|+..+|+.+++.....++...|+++-+. ++|.+
T Consensus 110 ----~~~f~yd~~------tl~~~~~~~y~---~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V 167 (264)
T PF05096_consen 110 ----GTGFVYDPN------TLKKIGTFPYP---GEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQV 167 (264)
T ss_dssp ----SEEEEEETT------TTEEEEEEE-S---SS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-
T ss_pred ----CeEEEEccc------cceEEEEEecC---CcceEEEcCCCEEEEECCccceEEECCcccceEEEEEE
Confidence 343333322 35555555543 23345556778888888888899999988655 34444
No 65
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=77.94 E-value=52 Score=29.51 Aligned_cols=105 Identities=14% Similarity=0.123 Sum_probs=61.7
Q ss_pred CCeEEEEeecCCCccccccccceeEEEEEECCCceEEEecCCCCcccccccccccceeeEEE--eCCeEEEEEEccccCC
Q 046787 216 NGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKELNVPDELKTDELAYGREQKLFIGA--LDQKLALMHYYTQWYN 293 (412)
Q Consensus 216 ~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~~~~~l~~--~~g~L~l~~~~~~~~~ 293 (412)
+|.|||.-... ..|..+|+.+.+...+.+|.. ..++. -+|+|++....
T Consensus 11 ~g~l~~~D~~~------------~~i~~~~~~~~~~~~~~~~~~-------------~G~~~~~~~g~l~v~~~~----- 60 (246)
T PF08450_consen 11 DGRLYWVDIPG------------GRIYRVDPDTGEVEVIDLPGP-------------NGMAFDRPDGRLYVADSG----- 60 (246)
T ss_dssp TTEEEEEETTT------------TEEEEEETTTTEEEEEESSSE-------------EEEEEECTTSEEEEEETT-----
T ss_pred CCEEEEEEcCC------------CEEEEEECCCCeEEEEecCCC-------------ceEEEEccCCEEEEEEcC-----
Confidence 69999997654 479999999999998888762 22222 36667665432
Q ss_pred CCCCCcEEEEEEeecCCCcceeEEEEeeccC-Ccccc--EEEEecCCEEEEEEcC---------CeEEEEECCCCcEEEE
Q 046787 294 SPSYDGCCIWMMKEYGLGESWTKQFKIDLRL-GLGKM--AGLRRNGEMLLVTRYN---------EELVSFNTVNRKMQKL 361 (412)
Q Consensus 294 ~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~-~~~~p--~~~~~~g~~ill~~~~---------~~l~~yd~~t~~~~~v 361 (412)
.+.+. + . ....+.......... ....| +.+.++|+ |++.... +.++.+++. ++.+.+
T Consensus 61 -----~~~~~--d-~-~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 61 -----GIAVV--D-P-DTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp -----CEEEE--E-T-TTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred -----ceEEE--e-c-CCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 22222 3 2 134667666663211 23233 56666754 6665321 458888888 555554
No 66
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=76.94 E-value=71 Score=30.54 Aligned_cols=108 Identities=12% Similarity=0.213 Sum_probs=60.4
Q ss_pred EEEEEECC--CceEEEe----cCCCCcccccccccccceeeEEEe-CCeEEEEEEccccCCCCCCCcEEEEEEeecCCCc
Q 046787 240 VLLAFDLR--EEVFKEL----NVPDELKTDELAYGREQKLFIGAL-DQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGE 312 (412)
Q Consensus 240 ~il~fD~~--~e~~~~i----~~P~~~~~~~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~~~~l~iW~l~~~~~~~ 312 (412)
.|.+|++. +..++.+ .+|......... ..|... +|+..++.... ...+.++.++.. ..
T Consensus 215 ~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~i~ispdg~~lyvsnr~-------~~sI~vf~~d~~--~g 279 (345)
T PF10282_consen 215 TVSVFDYDPSDGSLTEIQTISTLPEGFTGENAP------AEIAISPDGRFLYVSNRG-------SNSISVFDLDPA--TG 279 (345)
T ss_dssp EEEEEEEETTTTEEEEEEEEESCETTSCSSSSE------EEEEE-TTSSEEEEEECT-------TTEEEEEEECTT--TT
T ss_pred cEEEEeecccCCceeEEEEeeeccccccccCCc------eeEEEecCCCEEEEEecc-------CCEEEEEEEecC--CC
Confidence 45555555 6677665 244432211111 344444 67765555554 578888888642 23
Q ss_pred ceeEEEEeeccCCccccEEEEecCCEEEEEEc-CCeEEEE--ECCCCcEEEEE
Q 046787 313 SWTKQFKIDLRLGLGKMAGLRRNGEMLLVTRY-NEELVSF--NTVNRKMQKLG 362 (412)
Q Consensus 313 ~W~~~~~i~~~~~~~~p~~~~~~g~~ill~~~-~~~l~~y--d~~t~~~~~v~ 362 (412)
.-.....++..-...+-+.+.++|+.|++... .+.+.+| |.++++++.+.
T Consensus 280 ~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 280 TLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp TEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred ceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 34444455432223455677779888887753 4456555 66888888875
No 67
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=76.89 E-value=73 Score=30.68 Aligned_cols=137 Identities=12% Similarity=0.121 Sum_probs=70.8
Q ss_pred EEEEECCCC--CceecCCCCCCceeeecCCCceEECCeEEEEeecCCCccccccccceeEEEEEECCCc--eEEE-ecCC
Q 046787 183 VQVFALKVG--SWRNVTTGDTSLCRITVKTPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREE--VFKE-LNVP 257 (412)
Q Consensus 183 ~~vyss~t~--~Wr~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e--~~~~-i~~P 257 (412)
+..++..++ .|+... ..+.........++..+|.+|.-... ..+.++|+.++ .|+. +..|
T Consensus 157 l~a~d~~tG~~~W~~~~--~~~~~~~~~~~sp~~~~~~v~~~~~~-------------g~v~ald~~tG~~~W~~~~~~~ 221 (377)
T TIGR03300 157 LTALDAATGERLWTYSR--VTPALTLRGSASPVIADGGVLVGFAG-------------GKLVALDLQTGQPLWEQRVALP 221 (377)
T ss_pred EEEEEcCCCceeeEEcc--CCCceeecCCCCCEEECCEEEEECCC-------------CEEEEEEccCCCEeeeeccccC
Confidence 677777766 588652 22210111224556678877654332 35899998765 4543 2333
Q ss_pred CCccc----ccccccccceeeEEEeCCeEEEEEEccccCCCCCCCcEEEEEEeecCCCcceeEEEEeeccCCccccEEEE
Q 046787 258 DELKT----DELAYGREQKLFIGALDQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQFKIDLRLGLGKMAGLR 333 (412)
Q Consensus 258 ~~~~~----~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~ 333 (412)
..... .... ......+|.+++.... ..+..+.++. .+..|.... . ....|. +
T Consensus 222 ~g~~~~~~~~~~~------~~p~~~~~~vy~~~~~---------g~l~a~d~~t--G~~~W~~~~--~---~~~~p~-~- 277 (377)
T TIGR03300 222 KGRTELERLVDVD------GDPVVDGGQVYAVSYQ---------GRVAALDLRS--GRVLWKRDA--S---SYQGPA-V- 277 (377)
T ss_pred CCCCchhhhhccC------CccEEECCEEEEEEcC---------CEEEEEECCC--CcEEEeecc--C---CccCce-E-
Confidence 21100 0000 1223446766665433 3444444432 234576531 1 111222 2
Q ss_pred ecCCEEEEEEcCCeEEEEECCCCcEE
Q 046787 334 RNGEMLLVTRYNEELVSFNTVNRKMQ 359 (412)
Q Consensus 334 ~~g~~ill~~~~~~l~~yd~~t~~~~ 359 (412)
.++.|++...++.++.+|..+++..
T Consensus 278 -~~~~vyv~~~~G~l~~~d~~tG~~~ 302 (377)
T TIGR03300 278 -DDNRLYVTDADGVVVALDRRSGSEL 302 (377)
T ss_pred -eCCEEEEECCCCeEEEEECCCCcEE
Confidence 3468888777888999999888643
No 68
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=75.85 E-value=1.2e+02 Score=32.61 Aligned_cols=71 Identities=11% Similarity=0.085 Sum_probs=38.0
Q ss_pred CCeEEEEEEccccCCCCCCCcEEEEEEeecCCCcceeEEEEeecc--CCccccEEEEecCCEEEEEEcCCeEEEEECCCC
Q 046787 279 DQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQFKIDLR--LGLGKMAGLRRNGEMLLVTRYNEELVSFNTVNR 356 (412)
Q Consensus 279 ~g~L~l~~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~--~~~~~p~~~~~~g~~ill~~~~~~l~~yd~~t~ 356 (412)
+|.+-.+...+ ..+.||.+++......|..+..-.-. ..+..-++.+++|+.+++..-++.+.+|+.++-
T Consensus 149 ~~~fLAvss~d--------G~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~w 220 (933)
T KOG1274|consen 149 KGNFLAVSSCD--------GKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGW 220 (933)
T ss_pred CCCEEEEEecC--------ceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCc
Confidence 55555555543 78899999864333445554321100 111223444566666666655566777776554
Q ss_pred c
Q 046787 357 K 357 (412)
Q Consensus 357 ~ 357 (412)
+
T Consensus 221 e 221 (933)
T KOG1274|consen 221 E 221 (933)
T ss_pred e
Confidence 4
No 69
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=75.60 E-value=89 Score=31.04 Aligned_cols=59 Identities=17% Similarity=0.151 Sum_probs=38.6
Q ss_pred CCcEEEEEEeecCCCcceeEEEEeeccCCccccEEEEecCCEEEEEEcCCeEEEEECCCCcEEEEE
Q 046787 297 YDGCCIWMMKEYGLGESWTKQFKIDLRLGLGKMAGLRRNGEMLLVTRYNEELVSFNTVNRKMQKLG 362 (412)
Q Consensus 297 ~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~g~~ill~~~~~~l~~yd~~t~~~~~v~ 362 (412)
...+.|.-.+. .+..+|....+.-.-+.+.++|+.+++..+..+++++|+.+++.+.+.
T Consensus 381 gD~l~iyd~~~-------~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~id 439 (668)
T COG4946 381 GDKLGIYDKDG-------GEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID 439 (668)
T ss_pred CceEEEEecCC-------ceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec
Confidence 45666655442 122334322222244566778888888877888999999999998873
No 70
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=74.66 E-value=77 Score=29.84 Aligned_cols=134 Identities=10% Similarity=0.114 Sum_probs=69.3
Q ss_pred EEEEECCC-CCceecCCCCCCceeeecCCCceEE--CCe-EEEEeecCCCccccccccceeEEEEEECC-CceEEEec--
Q 046787 183 VQVFALKV-GSWRNVTTGDTSLCRITVKTPQAYV--NGT-LHWVGYDTESHHVAQGIQRRLVLLAFDLR-EEVFKELN-- 255 (412)
Q Consensus 183 ~~vyss~t-~~Wr~~~~~~~p~~~~~~~~~~v~~--~G~-lywl~~~~~~~~~~~~~~~~~~il~fD~~-~e~~~~i~-- 255 (412)
+.+|+..+ +.++.+.. .+. ......+.+ +|. ||...... ..|.+|++. +..++.+.
T Consensus 14 I~~~~~~~~g~l~~~~~--~~~---~~~~~~l~~spd~~~lyv~~~~~------------~~i~~~~~~~~g~l~~~~~~ 76 (330)
T PRK11028 14 IHVWNLNHEGALTLLQV--VDV---PGQVQPMVISPDKRHLYVGVRPE------------FRVLSYRIADDGALTFAAES 76 (330)
T ss_pred EEEEEECCCCceeeeeE--Eec---CCCCccEEECCCCCEEEEEECCC------------CcEEEEEECCCCceEEeeee
Confidence 78888764 56666522 221 011122333 564 45543322 457788886 45565442
Q ss_pred -CCCCcccccccccccceeeEEEe-CCeEEEEEEccccCCCCCCCcEEEEEEeecCCCcceeEEEEeeccCCccccEEEE
Q 046787 256 -VPDELKTDELAYGREQKLFIGAL-DQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQFKIDLRLGLGKMAGLR 333 (412)
Q Consensus 256 -~P~~~~~~~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~ 333 (412)
.+... ..++.. +|+..++.... ...+.+|.+++.+ ........+... .-..-+.+.
T Consensus 77 ~~~~~p------------~~i~~~~~g~~l~v~~~~-------~~~v~v~~~~~~g--~~~~~~~~~~~~-~~~~~~~~~ 134 (330)
T PRK11028 77 PLPGSP------------THISTDHQGRFLFSASYN-------ANCVSVSPLDKDG--IPVAPIQIIEGL-EGCHSANID 134 (330)
T ss_pred cCCCCc------------eEEEECCCCCEEEEEEcC-------CCeEEEEEECCCC--CCCCceeeccCC-CcccEeEeC
Confidence 22111 233333 66655554443 4788999987543 112222222211 111234567
Q ss_pred ecCCEEEEEE-cCCeEEEEECCC
Q 046787 334 RNGEMLLVTR-YNEELVSFNTVN 355 (412)
Q Consensus 334 ~~g~~ill~~-~~~~l~~yd~~t 355 (412)
++|+.+|+.. .++.+.+||+++
T Consensus 135 p~g~~l~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 135 PDNRTLWVPCLKEDRIRLFTLSD 157 (330)
T ss_pred CCCCEEEEeeCCCCEEEEEEECC
Confidence 7888887764 357799999976
No 71
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=73.63 E-value=9.8 Score=24.61 Aligned_cols=34 Identities=18% Similarity=0.180 Sum_probs=22.8
Q ss_pred CCeEEEEeecCCCccccccccceeEEEEEECCCceEEEe
Q 046787 216 NGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKEL 254 (412)
Q Consensus 216 ~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i 254 (412)
++.+|..++..... ......+..||+.+.+|+.+
T Consensus 1 g~~~~vfGG~~~~~-----~~~~nd~~~~~~~~~~W~~~ 34 (49)
T PF13415_consen 1 GNKLYVFGGYDDDG-----GTRLNDVWVFDLDTNTWTRI 34 (49)
T ss_pred CCEEEEECCcCCCC-----CCEecCEEEEECCCCEEEEC
Confidence 45677777655100 01225689999999999998
No 72
>PLN02772 guanylate kinase
Probab=73.58 E-value=23 Score=34.53 Aligned_cols=77 Identities=8% Similarity=0.085 Sum_probs=51.1
Q ss_pred CCCceEECCeEEEEeecCCCccccccccceeEEEEEECCCceEEEec----CCCCcccccccccccceeeEEEeCCeEEE
Q 046787 209 KTPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKELN----VPDELKTDELAYGREQKLFIGALDQKLAL 284 (412)
Q Consensus 209 ~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~----~P~~~~~~~~~~~~~~~~~l~~~~g~L~l 284 (412)
...++.++.++|.+++...... ....+..||..+.+|..-. .|..+ ++ + -.++.-+++|.+
T Consensus 27 ~~tav~igdk~yv~GG~~d~~~------~~~~v~i~D~~t~~W~~P~V~G~~P~~r--~G-h------Sa~v~~~~rilv 91 (398)
T PLN02772 27 RETSVTIGDKTYVIGGNHEGNT------LSIGVQILDKITNNWVSPIVLGTGPKPC--KG-Y------SAVVLNKDRILV 91 (398)
T ss_pred cceeEEECCEEEEEcccCCCcc------ccceEEEEECCCCcEecccccCCCCCCC--Cc-c------eEEEECCceEEE
Confidence 3567889999999997544210 2267999999999998742 23322 11 1 233444889988
Q ss_pred EEEccccCCCCCCCcEEEEEEee
Q 046787 285 MHYYTQWYNSPSYDGCCIWMMKE 307 (412)
Q Consensus 285 ~~~~~~~~~~~~~~~l~iW~l~~ 307 (412)
+.-.. ...-+||.|+-
T Consensus 92 ~~~~~-------~~~~~~w~l~~ 107 (398)
T PLN02772 92 IKKGS-------APDDSIWFLEV 107 (398)
T ss_pred EeCCC-------CCccceEEEEc
Confidence 87554 44568999984
No 73
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.53 E-value=92 Score=29.80 Aligned_cols=139 Identities=17% Similarity=0.285 Sum_probs=68.8
Q ss_pred EEEEECCCCCceecCCCCCCceeeecCCCceEECCe-EEEEeecCCCccccccccce--eEEEEEECCCceEEEe-cCCC
Q 046787 183 VQVFALKVGSWRNVTTGDTSLCRITVKTPQAYVNGT-LHWVGYDTESHHVAQGIQRR--LVLLAFDLREEVFKEL-NVPD 258 (412)
Q Consensus 183 ~~vyss~t~~Wr~~~~~~~p~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~~~~~~--~~il~fD~~~e~~~~i-~~P~ 258 (412)
+-+|+..++.|+.. ...|+.. .+..++...|. +-.+...-. ..... ....-|.-..++|..+ ++|.
T Consensus 198 v~sy~p~~n~W~~~--G~~pf~~--~aGsa~~~~~n~~~lInGEiK------pGLRt~~~k~~~~~~~~~~w~~l~~lp~ 267 (381)
T COG3055 198 VLSYDPSTNQWRNL--GENPFYG--NAGSAVVIKGNKLTLINGEIK------PGLRTAEVKQADFGGDNLKWLKLSDLPA 267 (381)
T ss_pred ccccccccchhhhc--CcCcccC--ccCcceeecCCeEEEEcceec------CCccccceeEEEeccCceeeeeccCCCC
Confidence 88999999999999 6677622 22234444444 333322110 00011 3445556678889887 5555
Q ss_pred Ccc--cccccccccceeeEEEeCCeEEEEEEcccc-----C-------CCC--CCCcEEEEEEeecCCCcceeEEEEeec
Q 046787 259 ELK--TDELAYGREQKLFIGALDQKLALMHYYTQW-----Y-------NSP--SYDGCCIWMMKEYGLGESWTKQFKIDL 322 (412)
Q Consensus 259 ~~~--~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~-----~-------~~~--~~~~l~iW~l~~~~~~~~W~~~~~i~~ 322 (412)
... .++.. | ..-+..+|.+-+.....-. + +++ -.-+-+||.+++ .+|.....++.
T Consensus 268 ~~~~~~eGvA-G----af~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~----g~Wk~~GeLp~ 338 (381)
T COG3055 268 PIGSNKEGVA-G----AFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDN----GSWKIVGELPQ 338 (381)
T ss_pred CCCCCccccc-e----eccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcC----CceeeecccCC
Confidence 332 11111 0 0112233444433322100 0 111 112346888884 68999998763
Q ss_pred cCCccccEEEEecCCEEEEE
Q 046787 323 RLGLGKMAGLRRNGEMLLVT 342 (412)
Q Consensus 323 ~~~~~~p~~~~~~g~~ill~ 342 (412)
.+..-+.+.-+++++++.
T Consensus 339 --~l~YG~s~~~nn~vl~IG 356 (381)
T COG3055 339 --GLAYGVSLSYNNKVLLIG 356 (381)
T ss_pred --CccceEEEecCCcEEEEc
Confidence 454445555454555554
No 74
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=72.13 E-value=82 Score=32.24 Aligned_cols=118 Identities=13% Similarity=0.096 Sum_probs=63.6
Q ss_pred CCceEECCeEEEEeecCCCccccccccceeEEEEEECCC--ceEEEe-cCCCCccc----ccccccccceeeEEEeCCeE
Q 046787 210 TPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLRE--EVFKEL-NVPDELKT----DELAYGREQKLFIGALDQKL 282 (412)
Q Consensus 210 ~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~--e~~~~i-~~P~~~~~----~~~~~~~~~~~~l~~~~g~L 282 (412)
..++..+|.+|..... ..|.++|..+ +.|+.- ..|..... .... ..++..+|++
T Consensus 63 stPvv~~g~vyv~s~~-------------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~------rg~av~~~~v 123 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSY-------------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVN------RGVALYDGKV 123 (527)
T ss_pred cCCEEECCEEEEECCC-------------CcEEEEECCCCceeeEecCCCCccccccccccccc------ccceEECCEE
Confidence 3567789999986654 3599999875 456642 33322110 0001 1245556776
Q ss_pred EEEEEccccCCCCCCCcEEEEEEeecCCCcceeEEEEeeccC---CccccEEEEecCCEEEEEEc------CCeEEEEEC
Q 046787 283 ALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQFKIDLRL---GLGKMAGLRRNGEMLLVTRY------NEELVSFNT 353 (412)
Q Consensus 283 ~l~~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~---~~~~p~~~~~~g~~ill~~~------~~~l~~yd~ 353 (412)
++..... .|..|+-...+..|.... .+... ....|+.. ++.|++... ++.++.||.
T Consensus 124 ~v~t~dg-----------~l~ALDa~TGk~~W~~~~-~~~~~~~~~tssP~v~---~g~Vivg~~~~~~~~~G~v~AlD~ 188 (527)
T TIGR03075 124 FFGTLDA-----------RLVALDAKTGKVVWSKKN-GDYKAGYTITAAPLVV---KGKVITGISGGEFGVRGYVTAYDA 188 (527)
T ss_pred EEEcCCC-----------EEEEEECCCCCEEeeccc-ccccccccccCCcEEE---CCEEEEeecccccCCCcEEEEEEC
Confidence 6544321 355555332345566532 11111 11244443 356766532 467999999
Q ss_pred CCCcEEEE
Q 046787 354 VNRKMQKL 361 (412)
Q Consensus 354 ~t~~~~~v 361 (412)
+|++..+-
T Consensus 189 ~TG~~lW~ 196 (527)
T TIGR03075 189 KTGKLVWR 196 (527)
T ss_pred CCCceeEe
Confidence 99987654
No 75
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=72.09 E-value=77 Score=28.69 Aligned_cols=146 Identities=11% Similarity=0.149 Sum_probs=82.7
Q ss_pred CCceecCCCCCCceeeecCCCceEECCeEEEEeecCCCccccccccceeEEEEEECCCceE-EEecCCCCcccccccccc
Q 046787 191 GSWRNVTTGDTSLCRITVKTPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVF-KELNVPDELKTDELAYGR 269 (412)
Q Consensus 191 ~~Wr~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~-~~i~~P~~~~~~~~~~~~ 269 (412)
+.|... -..|. .+.....|..||.+|...... ..|+.||+.++.- ....+|.....+.+.|.+
T Consensus 56 ~~~~~~--~~lp~--~~~gTg~VVynGs~yynk~~t------------~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~ 119 (249)
T KOG3545|consen 56 GRKAEK--YRLPY--SWDGTGHVVYNGSLYYNKAGT------------RNIIKYDLETRTVAGSAALPYAGYHNPSPYYW 119 (249)
T ss_pred cCcceE--EeCCC--CccccceEEEcceEEeeccCC------------cceEEEEeecceeeeeeeccccccCCCccccc
Confidence 345554 34554 234456788999999988554 5699999998643 344566543322222222
Q ss_pred c--ceeeEEEeCCeEEEEEEccccCCCCCCCcEEEEEEeecC--CCcceeEEEEeeccCCccccEEEEecCCEEEEEE--
Q 046787 270 E--QKLFIGALDQKLALMHYYTQWYNSPSYDGCCIWMMKEYG--LGESWTKQFKIDLRLGLGKMAGLRRNGEMLLVTR-- 343 (412)
Q Consensus 270 ~--~~~~l~~~~g~L~l~~~~~~~~~~~~~~~l~iW~l~~~~--~~~~W~~~~~i~~~~~~~~p~~~~~~g~~ill~~-- 343 (412)
. .-+.+++.+.-|.++....+ ....+.|-.|+..- .+..|...+ + ....+. ++..+ |+++...
T Consensus 120 ~g~sdiD~avDE~GLWviYat~~-----~~g~iv~skLdp~tl~~e~tW~T~~--~-k~~~~~--aF~iC-GvLY~v~S~ 188 (249)
T KOG3545|consen 120 GGHSDIDLAVDENGLWVIYATPE-----NAGTIVLSKLDPETLEVERTWNTTL--P-KRSAGN--AFMIC-GVLYVVHSY 188 (249)
T ss_pred CCCccccceecccceeEEecccc-----cCCcEEeeccCHHHhheeeeecccc--C-CCCcCc--eEEEe-eeeEEEecc
Confidence 1 12678888888888876652 34566666776421 335675432 1 112221 12222 3454432
Q ss_pred --cCCeE-EEEECCCCcEEEEEE
Q 046787 344 --YNEEL-VSFNTVNRKMQKLGI 363 (412)
Q Consensus 344 --~~~~l-~~yd~~t~~~~~v~~ 363 (412)
....+ +.||..+++-+.+.+
T Consensus 189 ~~~~~~i~yaydt~~~~~~~~~i 211 (249)
T KOG3545|consen 189 NCTHTQISYAYDTTTGTQERIDL 211 (249)
T ss_pred ccCCceEEEEEEcCCCceecccc
Confidence 12233 799999998877765
No 76
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=71.57 E-value=1.1e+02 Score=30.30 Aligned_cols=179 Identities=16% Similarity=0.195 Sum_probs=91.3
Q ss_pred cCcCcceeecCCCCcCCCcceEEEEeeeCCCC-CEEEEEEEEEecccccccCCCCCeEEEEECCCCCcee-cCCCCCCce
Q 046787 127 NPSLESCVRIMFKFTAANFESVHGFGFDPKSV-DYKVVRIVVRDHFIIGVRDAPRPVVQVFALKVGSWRN-VTTGDTSLC 204 (412)
Q Consensus 127 NP~T~~~~~LP~p~~~~~~~~~~~~g~d~~~~-~ykVv~~~~~~~~~~~~~~~~~~~~~vyss~t~~Wr~-~~~~~~p~~ 204 (412)
+|-++.|...-.|.....+.....+.|.|... +|.|..- ..+.+|++.+..=+. +. .+.-
T Consensus 8 t~e~~~w~~~~~~~~~ke~~~vssl~fsp~~P~d~aVt~S---------------~rvqly~~~~~~~~k~~s--rFk~- 69 (487)
T KOG0310|consen 8 TPEIRYWRQETFPPVHKEHNSVSSLCFSPKHPYDFAVTSS---------------VRVQLYSSVTRSVRKTFS--RFKD- 69 (487)
T ss_pred CccchhhhhhcccccccccCcceeEecCCCCCCceEEecc---------------cEEEEEecchhhhhhhHH--hhcc-
Confidence 45555565544332222244555666766432 3433221 128999998865333 21 1111
Q ss_pred eeecCCCceEECCeEEEEeecCCCccccccccceeEEEEEECCCce----EEEecCCCCcccccccccccceeeEEEeCC
Q 046787 205 RITVKTPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEV----FKELNVPDELKTDELAYGREQKLFIGALDQ 280 (412)
Q Consensus 205 ~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~----~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g 280 (412)
......+.-||.|...+... ..+-.||+.+.. +..-+.|... ......++
T Consensus 70 --~v~s~~fR~DG~LlaaGD~s------------G~V~vfD~k~r~iLR~~~ah~apv~~------------~~f~~~d~ 123 (487)
T KOG0310|consen 70 --VVYSVDFRSDGRLLAAGDES------------GHVKVFDMKSRVILRQLYAHQAPVHV------------TKFSPQDN 123 (487)
T ss_pred --ceeEEEeecCCeEEEccCCc------------CcEEEeccccHHHHHHHhhccCceeE------------EEecccCC
Confidence 01112234469998877654 468899966521 1111233221 12233456
Q ss_pred eEEEEEEccccCCCCCCCcEEEEEEeecCCCcceeEEEEeeccCCccccEEEEecCCEEEEE-EcCCeEEEEECCCCcEE
Q 046787 281 KLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQFKIDLRLGLGKMAGLRRNGEMLLVT-RYNEELVSFNTVNRKMQ 359 (412)
Q Consensus 281 ~L~l~~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~g~~ill~-~~~~~l~~yd~~t~~~~ 359 (412)
.+.+.+.. .....+|.+... . + +..|.-....-+-..+.+..+-|++. ..++.+-.||.++..-+
T Consensus 124 t~l~s~sD--------d~v~k~~d~s~a---~--v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~ 189 (487)
T KOG0310|consen 124 TMLVSGSD--------DKVVKYWDLSTA---Y--V-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSR 189 (487)
T ss_pred eEEEecCC--------CceEEEEEcCCc---E--E-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCce
Confidence 66555544 478889988751 1 3 33343222222333444433556665 45788999999988633
Q ss_pred EEEE
Q 046787 360 KLGI 363 (412)
Q Consensus 360 ~v~~ 363 (412)
.+.+
T Consensus 190 v~el 193 (487)
T KOG0310|consen 190 VVEL 193 (487)
T ss_pred eEEe
Confidence 3344
No 77
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=71.06 E-value=11 Score=21.72 Aligned_cols=25 Identities=8% Similarity=0.098 Sum_probs=20.5
Q ss_pred CCEEEEEEcCCeEEEEECCCCcEEE
Q 046787 336 GEMLLVTRYNEELVSFNTVNRKMQK 360 (412)
Q Consensus 336 g~~ill~~~~~~l~~yd~~t~~~~~ 360 (412)
++.+++...++.++.+|.++++..+
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEE
Confidence 3578888888899999999988654
No 78
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=70.77 E-value=8.6 Score=24.88 Aligned_cols=43 Identities=16% Similarity=0.268 Sum_probs=29.8
Q ss_pred eeEEEeCCeEEEEEEccccCCCCCCCcEEEEEEeecCCCcceeEEEE
Q 046787 273 LFIGALDQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQFK 319 (412)
Q Consensus 273 ~~l~~~~g~L~l~~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~ 319 (412)
...++.+++|++++.... ........++|+++- ....|..+..
T Consensus 5 hs~~~~~~kiyv~GG~~~--~~~~~~~~~v~~~d~--~t~~W~~~~~ 47 (49)
T PF07646_consen 5 HSAVVLDGKIYVFGGYGT--DNGGSSSNDVWVFDT--ETNQWTELSP 47 (49)
T ss_pred eEEEEECCEEEEECCccc--CCCCcccceeEEEEC--CCCEEeecCC
Confidence 456788999999998810 112345678999986 3578988643
No 79
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=70.51 E-value=50 Score=31.67 Aligned_cols=111 Identities=13% Similarity=0.030 Sum_probs=60.5
Q ss_pred EEEEEECCCceEEEecCCCCcccccccccccceeeEEEeCCeEEEEEEccccCCCCCC--CcEEEEEEee----cCCCcc
Q 046787 240 VLLAFDLREEVFKELNVPDELKTDELAYGREQKLFIGALDQKLALMHYYTQWYNSPSY--DGCCIWMMKE----YGLGES 313 (412)
Q Consensus 240 ~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~~--~~l~iW~l~~----~~~~~~ 313 (412)
.++.||.++......|..... ... ...+..+|+||++............ ..+++-+... ......
T Consensus 87 ~t~vyDt~t~av~~~P~l~~p---k~~------pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~ 157 (342)
T PF07893_consen 87 RTLVYDTDTRAVATGPRLHSP---KRC------PISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEES 157 (342)
T ss_pred CeEEEECCCCeEeccCCCCCC---Ccc------eEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCc
Confidence 488999999887754332211 111 2234448889999876421100000 0445433221 112334
Q ss_pred eeEEEEeeccCCcc---------ccEEEEecCCEEEEEEcCC--eEEEEECCCCcEEEE
Q 046787 314 WTKQFKIDLRLGLG---------KMAGLRRNGEMLLVTRYNE--ELVSFNTVNRKMQKL 361 (412)
Q Consensus 314 W~~~~~i~~~~~~~---------~p~~~~~~g~~ill~~~~~--~l~~yd~~t~~~~~v 361 (412)
|.=.. ++.+.... .-.++. +|..|++..... ..++||.++.+|+++
T Consensus 158 w~W~~-LP~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~~GTysfDt~~~~W~~~ 214 (342)
T PF07893_consen 158 WSWRS-LPPPPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGRRWGTYSFDTESHEWRKH 214 (342)
T ss_pred ceEEc-CCCCCccccCCcccceEEEEEEe-cCCeEEEEecCCceEEEEEEcCCcceeec
Confidence 44322 44322111 123455 788999976654 599999999999998
No 80
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=70.51 E-value=9.5 Score=23.25 Aligned_cols=25 Identities=12% Similarity=0.019 Sum_probs=20.8
Q ss_pred CEEEEEEcCCeEEEEECCCCcEEEE
Q 046787 337 EMLLVTRYNEELVSFNTVNRKMQKL 361 (412)
Q Consensus 337 ~~ill~~~~~~l~~yd~~t~~~~~v 361 (412)
+.|++...++.++.+|.+|++..+-
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~W~ 25 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVLWK 25 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEEEE
T ss_pred CEEEEeCCCCEEEEEECCCCCEEEe
Confidence 4677877788999999999997764
No 81
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=69.42 E-value=1.1e+02 Score=29.47 Aligned_cols=126 Identities=13% Similarity=0.218 Sum_probs=68.3
Q ss_pred ECCeEEEEeecCCCccccccccceeEEEEEECCCc------eEEEecCCCCcccccccccccceeeEEEeCCeEEEEEEc
Q 046787 215 VNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREE------VFKELNVPDELKTDELAYGREQKLFIGALDQKLALMHYY 288 (412)
Q Consensus 215 ~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e------~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~ 288 (412)
.+|..+|....+ .|..+|++.. .|..+..-.. .++...|.-|...+..-+++|+++...
T Consensus 204 ~dg~~~~vs~eG-------------~V~~id~~~~~~~~~~~~~~~~~~~~--~~~wrP~g~q~ia~~~dg~~lyV~~~~ 268 (352)
T TIGR02658 204 KSGRLVWPTYTG-------------KIFQIDLSSGDAKFLPAIEAFTEAEK--ADGWRPGGWQQVAYHRARDRIYLLADQ 268 (352)
T ss_pred CCCcEEEEecCC-------------eEEEEecCCCcceecceeeecccccc--ccccCCCcceeEEEcCCCCEEEEEecC
Confidence 378999998763 4778886443 2333321110 111222222222223335677774432
Q ss_pred cccCCCCCCCcEEEEEEeecCCCcceeEEEEeeccCCccccEEEEecCC-EEEEEE-cCCeEEEEECCCCcE-EEE
Q 046787 289 TQWYNSPSYDGCCIWMMKEYGLGESWTKQFKIDLRLGLGKMAGLRRNGE-MLLVTR-YNEELVSFNTVNRKM-QKL 361 (412)
Q Consensus 289 ~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~g~-~ill~~-~~~~l~~yd~~t~~~-~~v 361 (412)
.... ......-+||+++- .++....+|..... ...+.+.++|+ .++... ..+.+.++|..+.+. +.+
T Consensus 269 ~~~~-thk~~~~~V~ViD~----~t~kvi~~i~vG~~-~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 269 RAKW-THKTASRFLFVVDA----KTGKRLRKIELGHE-IDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred Cccc-cccCCCCEEEEEEC----CCCeEEEEEeCCCc-eeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 2000 00112237999984 57888888875321 23467778887 555443 356699999998864 455
No 82
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=68.39 E-value=10 Score=28.47 Aligned_cols=32 Identities=9% Similarity=0.218 Sum_probs=20.8
Q ss_pred EEEEecCCEEEEEE------------------cCCeEEEEECCCCcEEEE
Q 046787 330 AGLRRNGEMLLVTR------------------YNEELVSFNTVNRKMQKL 361 (412)
Q Consensus 330 ~~~~~~g~~ill~~------------------~~~~l~~yd~~t~~~~~v 361 (412)
+.+..+++.|+|.. ..++++.||++|++.+.+
T Consensus 3 ldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl 52 (89)
T PF03088_consen 3 LDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVL 52 (89)
T ss_dssp EEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEE
T ss_pred eeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEe
Confidence 34555656777762 247899999999998877
No 83
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=67.10 E-value=1.1e+02 Score=28.67 Aligned_cols=74 Identities=11% Similarity=0.109 Sum_probs=44.9
Q ss_pred CCeEEEEEEccccCCCCCCCcEEEEEEeecCCCcceeEEEEeeccCCccccEEEEecCCEEEEEEc-CCeEEEEE--CCC
Q 046787 279 DQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQFKIDLRLGLGKMAGLRRNGEMLLVTRY-NEELVSFN--TVN 355 (412)
Q Consensus 279 ~g~L~l~~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~g~~ill~~~-~~~l~~yd--~~t 355 (412)
+|+..++.... ...+.+|.++..+ ..+.....+... ....-+.+.++|..|+.... ++.+.+|+ ..+
T Consensus 238 dg~~lyv~~~~-------~~~I~v~~i~~~~--~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~ 307 (330)
T PRK11028 238 DGRHLYACDRT-------ASLISVFSVSEDG--SVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGET 307 (330)
T ss_pred CCCEEEEecCC-------CCeEEEEEEeCCC--CeEEEeEEEecc-ccCCceEECCCCCEEEEEEccCCcEEEEEEcCCC
Confidence 56544444332 4788999887533 345555555532 12234677788888887643 55566665 466
Q ss_pred CcEEEEE
Q 046787 356 RKMQKLG 362 (412)
Q Consensus 356 ~~~~~v~ 362 (412)
+.++.+.
T Consensus 308 g~l~~~~ 314 (330)
T PRK11028 308 GLLTELG 314 (330)
T ss_pred CcEEEcc
Confidence 7777764
No 84
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=66.24 E-value=43 Score=33.13 Aligned_cols=91 Identities=7% Similarity=0.163 Sum_probs=52.2
Q ss_pred CCceEEEe-cCCCCcccccccccccceeeEEEeCCeEEEEEEccccCCCCCCCcEEEEEEeecCCCcceeEEEEeeccCC
Q 046787 247 REEVFKEL-NVPDELKTDELAYGREQKLFIGALDQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQFKIDLRLG 325 (412)
Q Consensus 247 ~~e~~~~i-~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~ 325 (412)
+..+|..+ .++..... -+..+++++++.-.++ .. .|...+-.|.+ -.+ ++ +..+.
T Consensus 214 ~g~tFeK~vdl~~~vS~------------PmIV~~RvYFlsD~eG------~G--nlYSvdldGkD--lrr-HT-nFtdY 269 (668)
T COG4946 214 GGKTFEKFVDLDGNVSS------------PMIVGERVYFLSDHEG------VG--NLYSVDLDGKD--LRR-HT-NFTDY 269 (668)
T ss_pred CCcceeeeeecCCCcCC------------ceEEcceEEEEecccC------cc--ceEEeccCCch--hhh-cC-Cchhc
Confidence 34467664 77765532 2445788888876651 12 24444432211 001 10 00011
Q ss_pred ccccEEEEecCCEEEEEEcCCeEEEEECCCCcEEEEEEe
Q 046787 326 LGKMAGLRRNGEMLLVTRYNEELVSFNTVNRKMQKLGIY 364 (412)
Q Consensus 326 ~~~p~~~~~~g~~ill~~~~~~l~~yd~~t~~~~~v~~~ 364 (412)
.|--...+|..|+++. .+.++.||+++.++++++|.
T Consensus 270 --Y~R~~nsDGkrIvFq~-~GdIylydP~td~lekldI~ 305 (668)
T COG4946 270 --YPRNANSDGKRIVFQN-AGDIYLYDPETDSLEKLDIG 305 (668)
T ss_pred --cccccCCCCcEEEEec-CCcEEEeCCCcCcceeeecC
Confidence 2333345789998874 56799999999999999883
No 85
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=65.16 E-value=10 Score=37.62 Aligned_cols=136 Identities=14% Similarity=0.095 Sum_probs=80.1
Q ss_pred cCCCceEECC--eEEEEeecCCCccccccccceeEEEEEECCCceEEEec----CCCCcccccccccccceeeEEEeCCe
Q 046787 208 VKTPQAYVNG--TLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKELN----VPDELKTDELAYGREQKLFIGALDQK 281 (412)
Q Consensus 208 ~~~~~v~~~G--~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~----~P~~~~~~~~~~~~~~~~~l~~~~g~ 281 (412)
.....|+..| ++|..++.++... -.-...|..+.+.|..+. .|.....+. +.+-....+
T Consensus 262 gGHQMV~~~~~~CiYLYGGWdG~~~-------l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHR--------MVid~S~~K 326 (723)
T KOG2437|consen 262 GGHQMVIDVQTECVYLYGGWDGTQD-------LADFWAYSVKENQWTCINRDTEGPGARSCHR--------MVIDISRRK 326 (723)
T ss_pred CcceEEEeCCCcEEEEecCcccchh-------HHHHHhhcCCcceeEEeecCCCCCcchhhhh--------hhhhhhHhH
Confidence 4456777777 9999987654211 122567889999999984 454433211 233344567
Q ss_pred EEEEEEccccC-CCCCCCcEEEEEEeecCCCcceeEEEEeecc-C-----CccccEEEEecCCEEEEEEc---------C
Q 046787 282 LALMHYYTQWY-NSPSYDGCCIWMMKEYGLGESWTKQFKIDLR-L-----GLGKMAGLRRNGEMLLVTRY---------N 345 (412)
Q Consensus 282 L~l~~~~~~~~-~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~-~-----~~~~p~~~~~~g~~ill~~~---------~ 345 (412)
|++++..-+.- .......-++|+.+- .+..|...- .+.. + .+.+-.++..+.++|++.+. -
T Consensus 327 LYLlG~Y~~sS~r~~~s~RsDfW~FDi--~~~~W~~ls-~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f 403 (723)
T KOG2437|consen 327 LYLLGRYLDSSVRNSKSLRSDFWRFDI--DTNTWMLLS-EDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQF 403 (723)
T ss_pred HhhhhhccccccccccccccceEEEec--CCceeEEec-ccccccCCcceeecceeeEecCcceEEEecCeeccCCCccc
Confidence 88887654211 111234568999985 356898752 2211 1 12344555555455666521 1
Q ss_pred CeEEEEECCCCcEEEE
Q 046787 346 EELVSFNTVNRKMQKL 361 (412)
Q Consensus 346 ~~l~~yd~~t~~~~~v 361 (412)
+.++.||.+.+.|+.+
T Consensus 404 ~GLYaf~~~~~~w~~l 419 (723)
T KOG2437|consen 404 SGLYAFNCQCQTWKLL 419 (723)
T ss_pred cceEEEecCCccHHHH
Confidence 3499999999998765
No 86
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=64.86 E-value=1.4e+02 Score=32.23 Aligned_cols=127 Identities=13% Similarity=0.070 Sum_probs=65.8
Q ss_pred CCCceEECCeEEEEeecCCCccccccccceeEEEEEECCC--ceEEEe-cCCCCc-----ccccccccc-----------
Q 046787 209 KTPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLRE--EVFKEL-NVPDEL-----KTDELAYGR----------- 269 (412)
Q Consensus 209 ~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~--e~~~~i-~~P~~~-----~~~~~~~~~----------- 269 (412)
...++.++|++|..... ..++++|..+ +.|+.- ..+... ..++..|..
T Consensus 187 e~TPlvvgg~lYv~t~~-------------~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~ 253 (764)
T TIGR03074 187 QATPLKVGDTLYLCTPH-------------NKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAP 253 (764)
T ss_pred ccCCEEECCEEEEECCC-------------CeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCccccccccc
Confidence 35678899999998654 4599999874 456642 222210 011111100
Q ss_pred ------cceeeEEEeCCeEEEEEEccccCCCCCCCcEEEEEEeecCCCcceeEEEEeeccCC---ccccEEEEecCCEEE
Q 046787 270 ------EQKLFIGALDQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQFKIDLRLG---LGKMAGLRRNGEMLL 340 (412)
Q Consensus 270 ------~~~~~l~~~~g~L~l~~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~---~~~p~~~~~~g~~il 340 (412)
..++.+...+|+|+.+.... .-.+|.....+ ...|....--..+.. ...|+.+ +++|+
T Consensus 254 ~~p~~~~~rV~~~T~Dg~LiALDA~T---------Gk~~W~fg~~G-~vdl~~~~g~~~~g~~~~ts~P~V~---~g~VI 320 (764)
T TIGR03074 254 AAPADCARRIILPTSDARLIALDADT---------GKLCEDFGNNG-TVDLTAGMGTTPPGYYYPTSPPLVA---GTTVV 320 (764)
T ss_pred ccccccCCEEEEecCCCeEEEEECCC---------CCEEEEecCCC-ceeeecccCcCCCcccccccCCEEE---CCEEE
Confidence 00133444566666655442 33567766433 222443211110100 1234333 35777
Q ss_pred EEEc----------CCeEEEEECCCCcEEEE
Q 046787 341 VTRY----------NEELVSFNTVNRKMQKL 361 (412)
Q Consensus 341 l~~~----------~~~l~~yd~~t~~~~~v 361 (412)
+... .+.+..||.+|++..+-
T Consensus 321 vG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~ 351 (764)
T TIGR03074 321 IGGRVADNYSTDEPSGVIRAFDVNTGALVWA 351 (764)
T ss_pred EEecccccccccCCCcEEEEEECCCCcEeeE
Confidence 7531 46799999999998765
No 87
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=63.65 E-value=1.2e+02 Score=28.48 Aligned_cols=76 Identities=14% Similarity=0.127 Sum_probs=40.8
Q ss_pred CCceEECCeEEEEeecCCCccccccccceeEEEEEECCCceEEEe-cCCCCcccccccccccceeeEEEeCCeE---EEE
Q 046787 210 TPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKEL-NVPDELKTDELAYGREQKLFIGALDQKL---ALM 285 (412)
Q Consensus 210 ~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i-~~P~~~~~~~~~~~~~~~~~l~~~~g~L---~l~ 285 (412)
-.+|.++|..---++.+ ..|-.||+.+..-..+ --|... ..-.-..+.+ .|+
T Consensus 46 itavAVs~~~~aSGssD------------etI~IYDm~k~~qlg~ll~Hags------------itaL~F~~~~S~shLl 101 (362)
T KOG0294|consen 46 ITALAVSGPYVASGSSD------------ETIHIYDMRKRKQLGILLSHAGS------------ITALKFYPPLSKSHLL 101 (362)
T ss_pred eeEEEecceeEeccCCC------------CcEEEEeccchhhhcceeccccc------------eEEEEecCCcchhhee
Confidence 35567777533333332 5799999987643332 222211 1111222222 445
Q ss_pred EEccccCCCCCCCcEEEEEEeecCCCcceeEEEEeec
Q 046787 286 HYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQFKIDL 322 (412)
Q Consensus 286 ~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~ 322 (412)
...+ ...+.||..+ +|..+.++..
T Consensus 102 S~sd-------DG~i~iw~~~------~W~~~~slK~ 125 (362)
T KOG0294|consen 102 SGSD-------DGHIIIWRVG------SWELLKSLKA 125 (362)
T ss_pred eecC-------CCcEEEEEcC------CeEEeeeecc
Confidence 5444 5788999765 4887777753
No 88
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=62.54 E-value=1.1e+02 Score=30.01 Aligned_cols=144 Identities=17% Similarity=0.125 Sum_probs=76.5
Q ss_pred EEeeccEEEEeeeccCCCceeEEEEcCcCcceeecCCCC-cCCC----cceEEEEeeeCCCCCEEEEEEEEEeccccccc
Q 046787 102 IGICYGLVCLLDYHQKGLSKSVIVWNPSLESCVRIMFKF-TAAN----FESVHGFGFDPKSVDYKVVRIVVRDHFIIGVR 176 (412)
Q Consensus 102 ~~s~~GLlll~~~~~~~~~~~~~V~NP~T~~~~~LP~p~-~~~~----~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~ 176 (412)
.+--+.||||.-...+...-+++|+|..|++..+|.... .+.. ....+.=||--.++.||++-..
T Consensus 234 yA~vG~LILLrI~PY~E~~~RylVfN~~t~~V~R~Daig~acv~LPedqGiIFpgGYyLqtGe~K~Fd~~---------- 303 (448)
T PF12458_consen 234 YARVGNLILLRIRPYREEEWRYLVFNTRTKKVVRLDAIGQACVRLPEDQGIIFPGGYYLQTGEYKTFDTD---------- 303 (448)
T ss_pred eeecCcEEEEEeccCCCcceeEEEEecccceEEEecchhhhhhcCCccCceEccCceEeccCCceeeccc----------
Confidence 455667777776533222358999999999999887621 1110 2222333444445566654321
Q ss_pred CCCCCeEEEEECCCCCceecCCCCCCceeeecCCCceEECC--eEEEEeecCCCccccccccceeEEEEEECCCceEEEe
Q 046787 177 DAPRPVVQVFALKVGSWRNVTTGDTSLCRITVKTPQAYVNG--TLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKEL 254 (412)
Q Consensus 177 ~~~~~~~~vyss~t~~Wr~~~~~~~p~~~~~~~~~~v~~~G--~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i 254 (412)
.. ++-+... . ..=|| +||..-.... .+..+++||+-..+ +
T Consensus 304 -------------~~--------~l~F~r~-v----rSPNGEDvLYvF~~~~~---------g~~~Ll~YN~I~k~---v 345 (448)
T PF12458_consen 304 -------------MD--------GLEFERK-V----RSPNGEDVLYVFYAREE---------GRYLLLPYNLIRKE---V 345 (448)
T ss_pred -------------CC--------CceEEEE-e----cCCCCceEEEEEEECCC---------CcEEEEechhhhhh---h
Confidence 11 1111000 0 01133 6777665443 34789999987643 4
Q ss_pred cCCCCcccccccccccceeeEEEeCCeEEEEEEccccCCCCCCCcEEEEEEe
Q 046787 255 NVPDELKTDELAYGREQKLFIGALDQKLALMHYYTQWYNSPSYDGCCIWMMK 306 (412)
Q Consensus 255 ~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~~~~l~iW~l~ 306 (412)
..|-.+. + .-.--+|+|+++....+ +.....-+.||..-
T Consensus 346 ~tPi~ch--G---------~alf~DG~l~~fra~~~--EptrvHp~QiWqTP 384 (448)
T PF12458_consen 346 ATPIICH--G---------YALFEDGRLVYFRAEGD--EPTRVHPMQIWQTP 384 (448)
T ss_pred cCCeecc--c---------eeEecCCEEEEEecCCC--CcceeccceeecCC
Confidence 4554432 2 11334899999886621 11123457889865
No 89
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=61.59 E-value=1.2e+02 Score=27.25 Aligned_cols=107 Identities=10% Similarity=0.064 Sum_probs=56.5
Q ss_pred eEEEEEECCCceE-EEecCCCC-cccccccccccceeeEEE-eCCeEEEEEEccccCCCCCCCcEEEEEEeecCCCccee
Q 046787 239 LVLLAFDLREEVF-KELNVPDE-LKTDELAYGREQKLFIGA-LDQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWT 315 (412)
Q Consensus 239 ~~il~fD~~~e~~-~~i~~P~~-~~~~~~~~~~~~~~~l~~-~~g~L~l~~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~ 315 (412)
..|..||+.+.+. ..+..... ....... ...+.. -+|+..++.... ...+.+|-++ .|.
T Consensus 179 ~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~s~dg~~~~~~~~~-------~~~i~v~d~~------~~~ 240 (300)
T TIGR03866 179 GTVSVIDVATRKVIKKITFEIPGVHPEAVQ-----PVGIKLTKDGKTAFVALGP-------ANRVAVVDAK------TYE 240 (300)
T ss_pred CEEEEEEcCcceeeeeeeecccccccccCC-----ccceEECCCCCEEEEEcCC-------CCeEEEEECC------CCc
Confidence 4588899987654 33332110 0000000 012322 356654444332 3567788554 244
Q ss_pred EEEEeeccCCccccEEEEecCCEEEEE-EcCCeEEEEECCCCcE-EEEEEe
Q 046787 316 KQFKIDLRLGLGKMAGLRRNGEMLLVT-RYNEELVSFNTVNRKM-QKLGIY 364 (412)
Q Consensus 316 ~~~~i~~~~~~~~p~~~~~~g~~ill~-~~~~~l~~yd~~t~~~-~~v~~~ 364 (412)
....+.... ....+.+.++|+.|+.. ..++++.+||+++.+. +.+.+.
T Consensus 241 ~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~ 290 (300)
T TIGR03866 241 VLDYLLVGQ-RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG 290 (300)
T ss_pred EEEEEEeCC-CcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc
Confidence 443333211 22345667787877765 3467899999999885 666653
No 90
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=61.45 E-value=15 Score=22.51 Aligned_cols=21 Identities=14% Similarity=0.246 Sum_probs=16.5
Q ss_pred cCCEEEEEEcCCeEEEEECCC
Q 046787 335 NGEMLLVTRYNEELVSFNTVN 355 (412)
Q Consensus 335 ~g~~ill~~~~~~l~~yd~~t 355 (412)
.++.||+...+++++.+|.+|
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 357999999899999999875
No 91
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=60.99 E-value=60 Score=30.22 Aligned_cols=60 Identities=8% Similarity=0.126 Sum_probs=41.4
Q ss_pred CcEEEEEEeecCCCcceeEEEEeeccCCcccc---EEEEecCCEEEEEEcCCeEEEEECCCCcEEEEEEe
Q 046787 298 DGCCIWMMKEYGLGESWTKQFKIDLRLGLGKM---AGLRRNGEMLLVTRYNEELVSFNTVNRKMQKLGIY 364 (412)
Q Consensus 298 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~p---~~~~~~g~~ill~~~~~~l~~yd~~t~~~~~v~~~ 364 (412)
.++++|.++..+.-.. .-... ...| ++..++|.+++....++.+-.||+.+++...|..+
T Consensus 50 ~tVR~wevq~~g~~~~-ka~~~------~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~H 112 (347)
T KOG0647|consen 50 GTVRIWEVQNSGQLVP-KAQQS------HDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAH 112 (347)
T ss_pred CceEEEEEecCCcccc-hhhhc------cCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeec
Confidence 7999999997542111 11111 1223 23345788898888899999999999999998764
No 92
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=59.69 E-value=1.8e+02 Score=28.60 Aligned_cols=117 Identities=11% Similarity=0.112 Sum_probs=69.5
Q ss_pred ceEECCeEEEEeecCCCccccccccceeEEEEEECCCceEEEecCCCCcccccccccccceeeEEEeCCeEEEEEEcccc
Q 046787 212 QAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKELNVPDELKTDELAYGREQKLFIGALDQKLALMHYYTQW 291 (412)
Q Consensus 212 ~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~ 291 (412)
.++=||-|+-.+..+ ..+-.||+++.. ..-.+|..-. .. ..|.-.+.--+|++..+
T Consensus 354 ~fHpDgLifgtgt~d------------~~vkiwdlks~~-~~a~Fpght~--~v-------k~i~FsENGY~Lat~ad-- 409 (506)
T KOG0289|consen 354 AFHPDGLIFGTGTPD------------GVVKIWDLKSQT-NVAKFPGHTG--PV-------KAISFSENGYWLATAAD-- 409 (506)
T ss_pred eEcCCceEEeccCCC------------ceEEEEEcCCcc-ccccCCCCCC--ce-------eEEEeccCceEEEEEec--
Confidence 345577777666543 356778988877 5556665221 11 23333344555666554
Q ss_pred CCCCCCCcEEEEEEeecCCCcceeEEEEeeccCCcc-ccEEEEecCCEEEEEEcCCeEEEEECCCCcEEEEEE
Q 046787 292 YNSPSYDGCCIWMMKEYGLGESWTKQFKIDLRLGLG-KMAGLRRNGEMLLVTRYNEELVSFNTVNRKMQKLGI 363 (412)
Q Consensus 292 ~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~-~p~~~~~~g~~ill~~~~~~l~~yd~~t~~~~~v~~ 363 (412)
...+.+|-|.+.. ...++.+.+..+ .-+.++..|..+.+...+-+++.|+-++++|+++.-
T Consensus 410 -----d~~V~lwDLRKl~------n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~ 471 (506)
T KOG0289|consen 410 -----DGSVKLWDLRKLK------NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKE 471 (506)
T ss_pred -----CCeEEEEEehhhc------ccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeeh
Confidence 3558999998621 223333322222 235556666666666667779999999999999853
No 93
>smart00612 Kelch Kelch domain.
Probab=59.30 E-value=32 Score=21.19 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=16.6
Q ss_pred ceeEEEEcCcCcceeecCC
Q 046787 120 SKSVIVWNPSLESCVRIMF 138 (412)
Q Consensus 120 ~~~~~V~NP~T~~~~~LP~ 138 (412)
...+.++||.+++|..+|+
T Consensus 14 ~~~v~~yd~~~~~W~~~~~ 32 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPS 32 (47)
T ss_pred eeeEEEECCCCCeEccCCC
Confidence 3677899999999999987
No 94
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=58.18 E-value=44 Score=20.94 Aligned_cols=42 Identities=7% Similarity=0.075 Sum_probs=30.1
Q ss_pred eeEEEeCCeEEEEEEccccCCCCCCCcEEEEEEeecCCCcceeEEEEe
Q 046787 273 LFIGALDQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQFKI 320 (412)
Q Consensus 273 ~~l~~~~g~L~l~~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i 320 (412)
...++.+++|++++.... .....-.+|..+- ....|...-.+
T Consensus 5 ~~~~~~~~~iyv~GG~~~----~~~~~~~v~~yd~--~~~~W~~~~~m 46 (47)
T PF01344_consen 5 HAAVVVGNKIYVIGGYDG----NNQPTNSVEVYDP--ETNTWEELPPM 46 (47)
T ss_dssp EEEEEETTEEEEEEEBES----TSSBEEEEEEEET--TTTEEEEEEEE
T ss_pred CEEEEECCEEEEEeeecc----cCceeeeEEEEeC--CCCEEEEcCCC
Confidence 678899999999999872 1234456777764 24689988765
No 95
>PLN00181 protein SPA1-RELATED; Provisional
Probab=55.77 E-value=3e+02 Score=29.78 Aligned_cols=72 Identities=10% Similarity=0.055 Sum_probs=42.5
Q ss_pred eCCeEEEEEEccccCCCCCCCcEEEEEEeecCCCcceeEEEEeeccCCccccEEEEecCCEEEEEEcCCeEEEEECCCCc
Q 046787 278 LDQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQFKIDLRLGLGKMAGLRRNGEMLLVTRYNEELVSFNTVNRK 357 (412)
Q Consensus 278 ~~g~L~l~~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~g~~ill~~~~~~l~~yd~~t~~ 357 (412)
.++...+.+.. ...+.||.+........|.....+.-.......+++..+|+.|.....++.+..||.....
T Consensus 670 ~~~~~lvs~s~--------D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~ 741 (793)
T PLN00181 670 VDSSTLVSSST--------DNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPM 741 (793)
T ss_pred eCCCEEEEEEC--------CCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCC
Confidence 36665554444 3789999987432122455555443212222345666676766666678889999987654
No 96
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=55.05 E-value=1.4e+02 Score=27.74 Aligned_cols=45 Identities=13% Similarity=0.005 Sum_probs=32.1
Q ss_pred eEEEEEECCCceEEEecCCCCcccccccccccceeeEEEeCCeEEEEEEcc
Q 046787 239 LVLLAFDLREEVFKELNVPDELKTDELAYGREQKLFIGALDQKLALMHYYT 289 (412)
Q Consensus 239 ~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~ 289 (412)
..|..||.++..++.+++|......+.. -.+..-+|.|.+..+..
T Consensus 124 ~aI~R~dpkt~evt~f~lp~~~a~~nle------t~vfD~~G~lWFt~q~G 168 (353)
T COG4257 124 LAIGRLDPKTLEVTRFPLPLEHADANLE------TAVFDPWGNLWFTGQIG 168 (353)
T ss_pred ceeEEecCcccceEEeecccccCCCccc------ceeeCCCccEEEeeccc
Confidence 3699999999999999999765544433 23334467787776653
No 97
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=54.82 E-value=2e+02 Score=27.61 Aligned_cols=137 Identities=12% Similarity=0.046 Sum_probs=74.1
Q ss_pred EEEEECCCCCceecCCCCCCceeeecCCC-ceEECCeEEEEeecCCCccccccccceeEEEEEECCCce--EEEecCC--
Q 046787 183 VQVFALKVGSWRNVTTGDTSLCRITVKTP-QAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEV--FKELNVP-- 257 (412)
Q Consensus 183 ~~vyss~t~~Wr~~~~~~~p~~~~~~~~~-~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~--~~~i~~P-- 257 (412)
......++..|.......... . .... .+..+|.+|.....+ .|.+||+.+.. |+.-..+
T Consensus 37 ~~~~~~g~~~W~~~~~~~~~~--~-~~~~~~~~~dg~v~~~~~~G-------------~i~A~d~~~g~~~W~~~~~~~~ 100 (370)
T COG1520 37 VANNTSGTLLWSVSLGSGGGG--I-YAGPAPADGDGTVYVGTRDG-------------NIFALNPDTGLVKWSYPLLGAV 100 (370)
T ss_pred EEcccCcceeeeeecccCccc--e-EeccccEeeCCeEEEecCCC-------------cEEEEeCCCCcEEecccCcCcc
Confidence 455555666786431111111 1 1122 588999999985543 49999998776 6554333
Q ss_pred CCcccccccccccceeeEEEeCCeEEEEEEccccCCCCCCCcEEEEEEeecCCCcceeEEEEeeccCCccccEEEEecCC
Q 046787 258 DELKTDELAYGREQKLFIGALDQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQFKIDLRLGLGKMAGLRRNGE 337 (412)
Q Consensus 258 ~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~g~ 337 (412)
... . ..++..+|+|++-... . .++.++.......|.....-. ..+..+..+ ..+
T Consensus 101 ~~~-----~------~~~~~~~G~i~~g~~~---------g--~~y~ld~~~G~~~W~~~~~~~--~~~~~~~v~--~~~ 154 (370)
T COG1520 101 AQL-----S------GPILGSDGKIYVGSWD---------G--KLYALDASTGTLVWSRNVGGS--PYYASPPVV--GDG 154 (370)
T ss_pred eec-----c------CceEEeCCeEEEeccc---------c--eEEEEECCCCcEEEEEecCCC--eEEecCcEE--cCc
Confidence 111 1 1223337775554332 1 566776532245566654330 011112121 235
Q ss_pred EEEEEEcCCeEEEEECCCCcEEEE
Q 046787 338 MLLVTRYNEELVSFNTVNRKMQKL 361 (412)
Q Consensus 338 ~ill~~~~~~l~~yd~~t~~~~~v 361 (412)
.+++...++.++..|..+.+.++-
T Consensus 155 ~v~~~s~~g~~~al~~~tG~~~W~ 178 (370)
T COG1520 155 TVYVGTDDGHLYALNADTGTLKWT 178 (370)
T ss_pred EEEEecCCCeEEEEEccCCcEEEE
Confidence 677765677899999998887554
No 98
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=53.41 E-value=3e+02 Score=29.05 Aligned_cols=191 Identities=11% Similarity=0.102 Sum_probs=93.6
Q ss_pred EEEeeccEEEEeeeccCCCceeEEEEcCcCcceeecCCCC-cCCCcceEEEEeeeCCCCCEEEEEEEEEecccccccCCC
Q 046787 101 VIGICYGLVCLLDYHQKGLSKSVIVWNPSLESCVRIMFKF-TAANFESVHGFGFDPKSVDYKVVRIVVRDHFIIGVRDAP 179 (412)
Q Consensus 101 i~~s~~GLlll~~~~~~~~~~~~~V~NP~T~~~~~LP~p~-~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~ 179 (412)
+.=+.||=.|.... ...+.+.+-.|++.. +|... ........ +..+|. +=+++...+..-
T Consensus 25 ~~~s~nG~~L~t~~-----~d~Vi~idv~t~~~~-l~s~~~ed~d~ita--~~l~~d--~~~L~~a~rs~l--------- 85 (775)
T KOG0319|consen 25 VAWSSNGQHLYTAC-----GDRVIIIDVATGSIA-LPSGSNEDEDEITA--LALTPD--EEVLVTASRSQL--------- 85 (775)
T ss_pred eeECCCCCEEEEec-----CceEEEEEccCCcee-cccCCccchhhhhe--eeecCC--ccEEEEeeccce---------
Confidence 33455665555444 255666777888765 66622 22112333 333332 333333332222
Q ss_pred CCeEEEEECCCC----CceecCCCCCCceeeecCCCceEECCeEEEEeecCCCccccccccceeEEEEEECCCceEEE-e
Q 046787 180 RPVVQVFALKVG----SWRNVTTGDTSLCRITVKTPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKE-L 254 (412)
Q Consensus 180 ~~~~~vyss~t~----~Wr~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~-i 254 (412)
.++|++.++ +|+.+ ..-|.-. +-+++.-.-++..+.. ..+.+.|...+.... +
T Consensus 86 ---lrv~~L~tgk~irswKa~--He~Pvi~-------ma~~~~g~LlAtggaD----------~~v~VWdi~~~~~th~f 143 (775)
T KOG0319|consen 86 ---LRVWSLPTGKLIRSWKAI--HEAPVIT-------MAFDPTGTLLATGGAD----------GRVKVWDIKNGYCTHSF 143 (775)
T ss_pred ---EEEEEcccchHhHhHhhc--cCCCeEE-------EEEcCCCceEEecccc----------ceEEEEEeeCCEEEEEe
Confidence 899999987 79987 4556421 2233333444443321 467777777765543 2
Q ss_pred cC-CCCcccccccccccceeeEEEeCCe---EEEEEEccccCCCCCCCcEEEEEEeecCC-CcceeEEEEeeccCCcccc
Q 046787 255 NV-PDELKTDELAYGREQKLFIGALDQK---LALMHYYTQWYNSPSYDGCCIWMMKEYGL-GESWTKQFKIDLRLGLGKM 329 (412)
Q Consensus 255 ~~-P~~~~~~~~~~~~~~~~~l~~~~g~---L~l~~~~~~~~~~~~~~~l~iW~l~~~~~-~~~W~~~~~i~~~~~~~~p 329 (412)
.. |... .....+.. .-++.+.. ...+.+|.+.+... ...|.... .--.-
T Consensus 144 kG~gGvV-------------ssl~F~~~~~~~lL~sg~~-------D~~v~vwnl~~~~tcl~~~~~H~------S~vts 197 (775)
T KOG0319|consen 144 KGHGGVV-------------SSLLFHPHWNRWLLASGAT-------DGTVRVWNLNDKRTCLHTMILHK------SAVTS 197 (775)
T ss_pred cCCCceE-------------EEEEeCCccchhheeecCC-------CceEEEEEcccCchHHHHHHhhh------hheee
Confidence 22 2211 12222111 11222222 46778888874210 01122111 11123
Q ss_pred EEEEecCCEEEEEEcCCeEEEEECCCCcE
Q 046787 330 AGLRRNGEMLLVTRYNEELVSFNTVNRKM 358 (412)
Q Consensus 330 ~~~~~~g~~ill~~~~~~l~~yd~~t~~~ 358 (412)
+++..++..++-...+.-+.+||+.+.+-
T Consensus 198 L~~~~d~~~~ls~~RDkvi~vwd~~~~~~ 226 (775)
T KOG0319|consen 198 LAFSEDSLELLSVGRDKVIIVWDLVQYKK 226 (775)
T ss_pred eeeccCCceEEEeccCcEEEEeehhhhhh
Confidence 55566666666666677788999865554
No 99
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=52.56 E-value=24 Score=35.17 Aligned_cols=98 Identities=10% Similarity=0.072 Sum_probs=57.2
Q ss_pred EEEEECCCCCceecCC-CCCCceeeecCCCceEEC--CeEEEEeecCCCccccccccceeEEEEEECCCceEEEecCCCC
Q 046787 183 VQVFALKVGSWRNVTT-GDTSLCRITVKTPQAYVN--GTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKELNVPDE 259 (412)
Q Consensus 183 ~~vyss~t~~Wr~~~~-~~~p~~~~~~~~~~v~~~--G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~ 259 (412)
..+|+-+.+.|..+.. ...|.. ..+...|.-- -+||.++..-+.+. +.+.+.+.-+..||.++..|..+..-..
T Consensus 290 FW~Y~v~e~~W~~iN~~t~~PG~--RsCHRMVid~S~~KLYLlG~Y~~sS~-r~~~s~RsDfW~FDi~~~~W~~ls~dt~ 366 (723)
T KOG2437|consen 290 FWAYSVKENQWTCINRDTEGPGA--RSCHRMVIDISRRKLYLLGRYLDSSV-RNSKSLRSDFWRFDIDTNTWMLLSEDTA 366 (723)
T ss_pred HHhhcCCcceeEEeecCCCCCcc--hhhhhhhhhhhHhHHhhhhhcccccc-ccccccccceEEEecCCceeEEeccccc
Confidence 7999999999999844 224431 1223333222 37888886544321 1222344569999999999999865443
Q ss_pred cc-ccc--ccccccceeeEEEeCCe--EEEEEEcc
Q 046787 260 LK-TDE--LAYGREQKLFIGALDQK--LALMHYYT 289 (412)
Q Consensus 260 ~~-~~~--~~~~~~~~~~l~~~~g~--L~l~~~~~ 289 (412)
.. -+. +. ....+.+++ ||+.+.+.
T Consensus 367 ~dGGP~~vfD------HqM~Vd~~k~~iyVfGGr~ 395 (723)
T KOG2437|consen 367 ADGGPKLVFD------HQMCVDSEKHMIYVFGGRI 395 (723)
T ss_pred ccCCcceeec------ceeeEecCcceEEEecCee
Confidence 21 000 11 334444444 88877653
No 100
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=52.04 E-value=2.2e+02 Score=27.16 Aligned_cols=155 Identities=12% Similarity=0.124 Sum_probs=79.7
Q ss_pred eEEEEECCCCCceecCCCCCCceeeecCCCce-EECCe-EEEEeecCCCccccccccceeEEEEEECCCceEEEec----
Q 046787 182 VVQVFALKVGSWRNVTTGDTSLCRITVKTPQA-YVNGT-LHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKELN---- 255 (412)
Q Consensus 182 ~~~vyss~t~~Wr~~~~~~~p~~~~~~~~~~v-~~~G~-lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~---- 255 (412)
.+.+|++..+.-...+....+- ......-+ +=||+ .|.++.-. .+-.++.+|....++..++
T Consensus 168 ri~~y~~~dg~L~~~~~~~v~~--G~GPRHi~FHpn~k~aY~v~EL~----------stV~v~~y~~~~g~~~~lQ~i~t 235 (346)
T COG2706 168 RIFLYDLDDGKLTPADPAEVKP--GAGPRHIVFHPNGKYAYLVNELN----------STVDVLEYNPAVGKFEELQTIDT 235 (346)
T ss_pred eEEEEEcccCccccccccccCC--CCCcceEEEcCCCcEEEEEeccC----------CEEEEEEEcCCCceEEEeeeecc
Confidence 3899999877666553211111 01111222 23564 46555543 2245666677678888764
Q ss_pred CCCCcccccccccccceeeEEE-eCCeEEEEEEccccCCCCCCCcEEEEEEeecCCCcceeEEEEeeccCCccccEEEEe
Q 046787 256 VPDELKTDELAYGREQKLFIGA-LDQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQFKIDLRLGLGKMAGLRR 334 (412)
Q Consensus 256 ~P~~~~~~~~~~~~~~~~~l~~-~~g~L~l~~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~ 334 (412)
+|......... ..|-. -+|+.-+++.+. ...|.+...+..+ ..=..+...+..-...+-+-+..
T Consensus 236 lP~dF~g~~~~------aaIhis~dGrFLYasNRg-------~dsI~~f~V~~~~--g~L~~~~~~~teg~~PR~F~i~~ 300 (346)
T COG2706 236 LPEDFTGTNWA------AAIHISPDGRFLYASNRG-------HDSIAVFSVDPDG--GKLELVGITPTEGQFPRDFNINP 300 (346)
T ss_pred CccccCCCCce------eEEEECCCCCEEEEecCC-------CCeEEEEEEcCCC--CEEEEEEEeccCCcCCccceeCC
Confidence 56654321111 23333 377766655554 3555555555543 22222222221111245566666
Q ss_pred cCCEEEEEEcC---CeEEEEECCCCcEEEEEE
Q 046787 335 NGEMLLVTRYN---EELVSFNTVNRKMQKLGI 363 (412)
Q Consensus 335 ~g~~ill~~~~---~~l~~yd~~t~~~~~v~~ 363 (412)
.|+.|+....+ -.++.-|.+|+++.++.-
T Consensus 301 ~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 301 SGRFLIAANQKSDNITVFERDKETGRLTLLGR 332 (346)
T ss_pred CCCEEEEEccCCCcEEEEEEcCCCceEEeccc
Confidence 76666655322 237778889999888743
No 101
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=50.21 E-value=1.9e+02 Score=25.97 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=21.2
Q ss_pred EEEEecCCEEEEEE-cCCeEEEEECCCCcE
Q 046787 330 AGLRRNGEMLLVTR-YNEELVSFNTVNRKM 358 (412)
Q Consensus 330 ~~~~~~g~~ill~~-~~~~l~~yd~~t~~~ 358 (412)
+.+..+|..+++.. .++.+..||+++.+.
T Consensus 162 ~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 162 AEFTADGKELWVSSEIGGTVSVIDVATRKV 191 (300)
T ss_pred EEECCCCCEEEEEcCCCCEEEEEEcCccee
Confidence 55666777776654 367799999998765
No 102
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=49.74 E-value=70 Score=25.49 Aligned_cols=41 Identities=24% Similarity=0.243 Sum_probs=29.5
Q ss_pred CCeEEEEECCCCcEEEEEEe--c--ccceEEEeeeeecceecccc
Q 046787 345 NEELVSFNTVNRKMQKLGIY--G--ETWSFFLDTYVESLVLMQRI 385 (412)
Q Consensus 345 ~~~l~~yd~~t~~~~~v~~~--~--~~~~~~~~~y~~slv~~~~~ 385 (412)
...+++||+++++++.+..+ . .........|...|.-+...
T Consensus 19 ~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~ 63 (129)
T PF08268_consen 19 NNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYN 63 (129)
T ss_pred CcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEec
Confidence 35699999999999999885 1 12345677888887665443
No 103
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=46.60 E-value=2.3e+02 Score=25.84 Aligned_cols=110 Identities=14% Similarity=0.123 Sum_probs=62.4
Q ss_pred eEEEEEECCCceEEEecCCCCcccccccccccceeeEEEe-CCeEEEEEEccccCCCCCCCcEEEEEEeecCCCcceeEE
Q 046787 239 LVLLAFDLREEVFKELNVPDELKTDELAYGREQKLFIGAL-DQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQ 317 (412)
Q Consensus 239 ~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~ 317 (412)
..|-+.|+.+..+.....|+... +- -.|.+. +|+....... ..+..+|.|-.......-+-+
T Consensus 146 g~irvWDl~~~~c~~~liPe~~~---~i------~sl~v~~dgsml~a~nn--------kG~cyvW~l~~~~~~s~l~P~ 208 (311)
T KOG0315|consen 146 GNIRVWDLGENSCTHELIPEDDT---SI------QSLTVMPDGSMLAAANN--------KGNCYVWRLLNHQTASELEPV 208 (311)
T ss_pred CcEEEEEccCCccccccCCCCCc---ce------eeEEEcCCCcEEEEecC--------CccEEEEEccCCCccccceEh
Confidence 56999999999999999997542 11 356666 6665444444 478899999752111122222
Q ss_pred EEeeccCCccccEEEEecCCEEEEEEcCCeEEEEECCCCcEEEEEEec
Q 046787 318 FKIDLRLGLGKMAGLRRNGEMLLVTRYNEELVSFNTVNRKMQKLGIYG 365 (412)
Q Consensus 318 ~~i~~~~~~~~p~~~~~~g~~ill~~~~~~l~~yd~~t~~~~~v~~~~ 365 (412)
..+.......--+-+.++++.|.-...+..+.+++.++.-.-++.+.|
T Consensus 209 ~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~g 256 (311)
T KOG0315|consen 209 HKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTG 256 (311)
T ss_pred hheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeec
Confidence 222221111111233445444444455667899998887333444444
No 104
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=46.45 E-value=60 Score=25.28 Aligned_cols=40 Identities=10% Similarity=0.201 Sum_probs=29.6
Q ss_pred eeEEEEcCcCc-ceeecCCCCcCCCcceEEEEeeeCCCCCEEEEEEE
Q 046787 121 KSVIVWNPSLE-SCVRIMFKFTAANFESVHGFGFDPKSVDYKVVRIV 166 (412)
Q Consensus 121 ~~~~V~NP~T~-~~~~LP~p~~~~~~~~~~~~g~d~~~~~ykVv~~~ 166 (412)
..++++||.|+ .|+ |... ....+.+-+|+..+.|+||.+.
T Consensus 11 A~V~~yd~~tKk~Wv--Ps~~----~~~~V~~y~~~~~ntfRIi~~~ 51 (111)
T cd01206 11 AHVFQIDPKTKKNWI--PASK----HAVTVSYFYDSTRNVYRIISVG 51 (111)
T ss_pred eEEEEECCCCcceeE--eCCC----CceeEEEEecCCCcEEEEEEec
Confidence 67899999986 774 4421 2345677789999999999863
No 105
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=44.93 E-value=2.7e+02 Score=26.11 Aligned_cols=90 Identities=14% Similarity=0.094 Sum_probs=50.0
Q ss_pred eEEEEEECCCceEEEecCCCCcccccccccccceeeEEEeCCeEEEEEEccccCCCCCCCcEEEEEEeec---CCCccee
Q 046787 239 LVLLAFDLREEVFKELNVPDELKTDELAYGREQKLFIGALDQKLALMHYYTQWYNSPSYDGCCIWMMKEY---GLGESWT 315 (412)
Q Consensus 239 ~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~~~~l~iW~l~~~---~~~~~W~ 315 (412)
..|..+|+.+..-..|..-.... ..+--.-+.=+++...- ..++.+|-.... +.-..=.
T Consensus 75 g~vr~~Dln~~~~~~igth~~~i-----------~ci~~~~~~~~vIsgsW-------D~~ik~wD~R~~~~~~~~d~~k 136 (323)
T KOG1036|consen 75 GQVRRYDLNTGNEDQIGTHDEGI-----------RCIEYSYEVGCVISGSW-------DKTIKFWDPRNKVVVGTFDQGK 136 (323)
T ss_pred ceEEEEEecCCcceeeccCCCce-----------EEEEeeccCCeEEEccc-------CccEEEEeccccccccccccCc
Confidence 46888998876655543221110 11222222333444332 478889987631 1001111
Q ss_pred EEEEeeccCCccccEEEEecCCEEEEEEcCCeEEEEECCCCcE
Q 046787 316 KQFKIDLRLGLGKMAGLRRNGEMLLVTRYNEELVSFNTVNRKM 358 (412)
Q Consensus 316 ~~~~i~~~~~~~~p~~~~~~g~~ill~~~~~~l~~yd~~t~~~ 358 (412)
++++++ -.|+.|++.+.+.+++.||+.+...
T Consensus 137 kVy~~~------------v~g~~LvVg~~~r~v~iyDLRn~~~ 167 (323)
T KOG1036|consen 137 KVYCMD------------VSGNRLVVGTSDRKVLIYDLRNLDE 167 (323)
T ss_pred eEEEEe------------ccCCEEEEeecCceEEEEEcccccc
Confidence 444444 4578888888888999999987654
No 106
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=44.23 E-value=3.2e+02 Score=26.81 Aligned_cols=70 Identities=16% Similarity=0.253 Sum_probs=39.5
Q ss_pred eCCeEEEEEEccccCCCCCCCcEEEEEEeecCCCcceeEEEE-eeccCCccccEEEEecC-CEEEEE-EcCCeEEEEECC
Q 046787 278 LDQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQFK-IDLRLGLGKMAGLRRNG-EMLLVT-RYNEELVSFNTV 354 (412)
Q Consensus 278 ~~g~L~l~~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~-i~~~~~~~~p~~~~~~g-~~ill~-~~~~~l~~yd~~ 354 (412)
-+|++.++.... ..+.+|-+++. ..+.+ .....+..-.-.+...+ +.+++. ..+++++.++.+
T Consensus 405 ~d~k~~LvnL~~--------qei~LWDl~e~------~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~ 470 (519)
T KOG0293|consen 405 KDGKLALVNLQD--------QEIHLWDLEEN------KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRI 470 (519)
T ss_pred CCCcEEEEEccc--------CeeEEeecchh------hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEcc
Confidence 488999998874 89999999962 22110 01111110111111112 234344 457889999999
Q ss_pred CCcEEEE
Q 046787 355 NRKMQKL 361 (412)
Q Consensus 355 t~~~~~v 361 (412)
+++.-.+
T Consensus 471 sgkll~~ 477 (519)
T KOG0293|consen 471 SGKLLAV 477 (519)
T ss_pred CCceeEe
Confidence 9886543
No 107
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=42.80 E-value=96 Score=29.11 Aligned_cols=100 Identities=14% Similarity=0.102 Sum_probs=54.9
Q ss_pred cceeEEEEeeccCCccccEEEEecCCEEEEE-EcCCeEEEEECCCCcEEEEEEecccceEEEeeeeec----ceeccccc
Q 046787 312 ESWTKQFKIDLRLGLGKMAGLRRNGEMLLVT-RYNEELVSFNTVNRKMQKLGIYGETWSFFLDTYVES----LVLMQRIN 386 (412)
Q Consensus 312 ~~W~~~~~i~~~~~~~~p~~~~~~g~~ill~-~~~~~l~~yd~~t~~~~~v~~~~~~~~~~~~~y~~s----lv~~~~~~ 386 (412)
..|+.+......-..+..-++.-+ +..+.. ..+..+..||+.+++---.-+.....--....|.+. |++-....
T Consensus 29 ~~~~l~~lF~~~aH~~sitavAVs-~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG 107 (362)
T KOG0294|consen 29 VKPTLKPLFAFSAHAGSITALAVS-GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDG 107 (362)
T ss_pred cceeeeccccccccccceeEEEec-ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCC
Confidence 456655433322222223333334 344444 456779999998775322211111122223344443 66666666
Q ss_pred ceeccCCCCCCCccccccccCCCCCC
Q 046787 387 GVLKMPTPPFNATSSSKAHRGETSGV 412 (412)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (412)
..+.-+.-++----+-|||-|+-+++
T Consensus 108 ~i~iw~~~~W~~~~slK~H~~~Vt~l 133 (362)
T KOG0294|consen 108 HIIIWRVGSWELLKSLKAHKGQVTDL 133 (362)
T ss_pred cEEEEEcCCeEEeeeeccccccccee
Confidence 67777788887788889998876653
No 108
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=41.44 E-value=81 Score=31.10 Aligned_cols=62 Identities=19% Similarity=0.147 Sum_probs=38.3
Q ss_pred CcEEEEEEeecCCCcceeEEEEeeccCCccccEEEEecCC-EEEEEEcCCeEEEEECCCCcEEEEEE
Q 046787 298 DGCCIWMMKEYGLGESWTKQFKIDLRLGLGKMAGLRRNGE-MLLVTRYNEELVSFNTVNRKMQKLGI 363 (412)
Q Consensus 298 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~g~-~ill~~~~~~l~~yd~~t~~~~~v~~ 363 (412)
.++.|..++.. .. .++..|-+...--.-..+.++|. .|+..+...-++.||+++.++.++.-
T Consensus 235 ~~lrifqvDGk--~N--~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~ 297 (514)
T KOG2055|consen 235 GTLRIFQVDGK--VN--PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKP 297 (514)
T ss_pred CcEEEEEecCc--cC--hhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccC
Confidence 67778877742 11 24444443211112345566776 66666666669999999999999853
No 109
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=40.93 E-value=4.5e+02 Score=27.59 Aligned_cols=50 Identities=24% Similarity=0.252 Sum_probs=32.8
Q ss_pred eEEEEEECCCceEEEecCCCCcccccccccccceeeEE-EeCCeEEEEEEccccCCCCCCCcEEEEEEee
Q 046787 239 LVLLAFDLREEVFKELNVPDELKTDELAYGREQKLFIG-ALDQKLALMHYYTQWYNSPSYDGCCIWMMKE 307 (412)
Q Consensus 239 ~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~~~~~l~-~~~g~L~l~~~~~~~~~~~~~~~l~iW~l~~ 307 (412)
..|.-.|+..|....+..-.. +- ..+. ..++.+.+.+..+ .+++||.-++
T Consensus 200 g~Ir~w~~~ge~l~~~~ghtn-----~v------Ysis~~~~~~~Ivs~gED--------rtlriW~~~e 250 (745)
T KOG0301|consen 200 GSIRLWDLDGEVLLEMHGHTN-----FV------YSISMALSDGLIVSTGED--------RTLRIWKKDE 250 (745)
T ss_pred ceEEEEeccCceeeeeeccce-----EE------EEEEecCCCCeEEEecCC--------ceEEEeecCc
Confidence 467777887777766543322 21 3344 4578888887775 8999998763
No 110
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=40.01 E-value=4.9e+02 Score=27.74 Aligned_cols=112 Identities=14% Similarity=0.184 Sum_probs=72.2
Q ss_pred CceEEC--CeEEEEeecCCCccccccccceeEEEEEECCCceEEEecCCCCcccccccccccceeeE-EEeCCeEEEEEE
Q 046787 211 PQAYVN--GTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKELNVPDELKTDELAYGREQKLFI-GALDQKLALMHY 287 (412)
Q Consensus 211 ~~v~~~--G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~~~~~l-~~~~g~L~l~~~ 287 (412)
.+|.+| |-+-+.+..+. +.|...++.+++.-.+---..... ..| ..-+|.+-+...
T Consensus 439 scvavD~sGelV~AG~~d~-----------F~IfvWS~qTGqllDiLsGHEgPV----------s~l~f~~~~~~LaS~S 497 (893)
T KOG0291|consen 439 SCVAVDPSGELVCAGAQDS-----------FEIFVWSVQTGQLLDILSGHEGPV----------SGLSFSPDGSLLASGS 497 (893)
T ss_pred eEEEEcCCCCEEEeeccce-----------EEEEEEEeecCeeeehhcCCCCcc----------eeeEEccccCeEEecc
Confidence 345666 88887776643 789999999988766532111100 122 233566544444
Q ss_pred ccccCCCCCCCcEEEEEEeecCCCcceeEEEEeeccCCccccEEEEecCCEEEEEEcCCeEEEEECCCCc
Q 046787 288 YTQWYNSPSYDGCCIWMMKEYGLGESWTKQFKIDLRLGLGKMAGLRRNGEMLLVTRYNEELVSFNTVNRK 357 (412)
Q Consensus 288 ~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~g~~ill~~~~~~l~~yd~~t~~ 357 (412)
.+ .++.||.+-+ +|..+.+++..... --+.+.++|+.|-+.+-++++-.||.+...
T Consensus 498 WD--------kTVRiW~if~-----s~~~vEtl~i~sdv-l~vsfrPdG~elaVaTldgqItf~d~~~~~ 553 (893)
T KOG0291|consen 498 WD--------KTVRIWDIFS-----SSGTVETLEIRSDV-LAVSFRPDGKELAVATLDGQITFFDIKEAV 553 (893)
T ss_pred cc--------ceEEEEEeec-----cCceeeeEeeccce-eEEEEcCCCCeEEEEEecceEEEEEhhhce
Confidence 43 8999999875 57777777653221 235667788888888888889899886554
No 111
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=38.36 E-value=91 Score=24.49 Aligned_cols=42 Identities=19% Similarity=0.109 Sum_probs=29.4
Q ss_pred eeEEEEcCcCcceeecCCCC-cCCCcceEEEEeeeCCCCCEEEEEEE
Q 046787 121 KSVIVWNPSLESCVRIMFKF-TAANFESVHGFGFDPKSVDYKVVRIV 166 (412)
Q Consensus 121 ~~~~V~NP~T~~~~~LP~p~-~~~~~~~~~~~g~d~~~~~ykVv~~~ 166 (412)
..+.++||.|+.| ||... .. ..+.+.+-+++..+.|+|+...
T Consensus 9 A~Vm~~d~~tk~W--~P~~~~~~--~ls~V~~~~~~~~~~yrIvg~~ 51 (111)
T cd01207 9 ASVMVYDDSNKKW--VPAGGGSQ--GFSRVQIYHHPRNNTFRVVGRK 51 (111)
T ss_pred EEeeEEcCCCCcE--EcCCCCCC--CcceEEEEEcCCCCEEEEEEee
Confidence 5678899999987 55421 11 2345666678888999998763
No 112
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=38.17 E-value=4.3e+02 Score=26.64 Aligned_cols=31 Identities=16% Similarity=0.282 Sum_probs=22.6
Q ss_pred CCceEECCeEEEEeecCCCccccccccceeEEEEEECCCc--eEEE
Q 046787 210 TPQAYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREE--VFKE 253 (412)
Q Consensus 210 ~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e--~~~~ 253 (412)
..+++.+|.+|....+ ..+.++|..+. .|+.
T Consensus 55 ~sPvv~~g~vy~~~~~-------------g~l~AlD~~tG~~~W~~ 87 (488)
T cd00216 55 GTPLVVDGDMYFTTSH-------------SALFALDAATGKVLWRY 87 (488)
T ss_pred cCCEEECCEEEEeCCC-------------CcEEEEECCCChhhcee
Confidence 3567889999987654 35899998754 5664
No 113
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=37.73 E-value=3.8e+02 Score=25.83 Aligned_cols=72 Identities=7% Similarity=-0.027 Sum_probs=42.7
Q ss_pred EEeCCeEEEEEEccccCCCCCCCcEEEEEEeecCC-CcceeEEEEeeccCCccccEEEEecCCEEEEEE----------c
Q 046787 276 GALDQKLALMHYYTQWYNSPSYDGCCIWMMKEYGL-GESWTKQFKIDLRLGLGKMAGLRRNGEMLLVTR----------Y 344 (412)
Q Consensus 276 ~~~~g~L~l~~~~~~~~~~~~~~~l~iW~l~~~~~-~~~W~~~~~i~~~~~~~~p~~~~~~g~~ill~~----------~ 344 (412)
+..+|.++++.... ........|.+...+. ++.|.... -.|++++++|+.+|+.. .
T Consensus 211 vs~eG~V~~id~~~-----~~~~~~~~~~~~~~~~~~~~wrP~g--------~q~ia~~~dg~~lyV~~~~~~~~thk~~ 277 (352)
T TIGR02658 211 PTYTGKIFQIDLSS-----GDAKFLPAIEAFTEAEKADGWRPGG--------WQQVAYHRARDRIYLLADQRAKWTHKTA 277 (352)
T ss_pred EecCCeEEEEecCC-----CcceecceeeeccccccccccCCCc--------ceeEEEcCCCCEEEEEecCCccccccCC
Confidence 44468888887543 1133445666543321 12343211 14588888889998832 1
Q ss_pred CCeEEEEECCCCcEEE
Q 046787 345 NEELVSFNTVNRKMQK 360 (412)
Q Consensus 345 ~~~l~~yd~~t~~~~~ 360 (412)
..++..+|.++++...
T Consensus 278 ~~~V~ViD~~t~kvi~ 293 (352)
T TIGR02658 278 SRFLFVVDAKTGKRLR 293 (352)
T ss_pred CCEEEEEECCCCeEEE
Confidence 2579999999988654
No 114
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=37.45 E-value=22 Score=33.62 Aligned_cols=36 Identities=22% Similarity=0.499 Sum_probs=30.1
Q ss_pred CCCcHHHHHHHHccCC--------cccceeeeecchhhhhhhcC
Q 046787 3 DYVPEEVVAQILFRLP--------AKSVSEFRCVCKSWCALIND 38 (412)
Q Consensus 3 ~~LP~Dll~eIL~rLP--------~ksl~r~r~VcK~W~~li~~ 38 (412)
+.||.++|.+|+.|.- -+++..|..|||.|+.+..+
T Consensus 46 ~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 46 AALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred hcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 3699999999999875 23788999999999997654
No 115
>PF13013 F-box-like_2: F-box-like domain
Probab=37.17 E-value=11 Score=29.57 Aligned_cols=28 Identities=14% Similarity=0.142 Sum_probs=23.5
Q ss_pred CCCcHHHHHHHHccCCcccceeeeecch
Q 046787 3 DYVPEEVVAQILFRLPAKSVSEFRCVCK 30 (412)
Q Consensus 3 ~~LP~Dll~eIL~rLP~ksl~r~r~VcK 30 (412)
..||+||+..|+.......+...-..|+
T Consensus 23 ~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 23 LDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 4699999999999999998876666665
No 116
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=34.60 E-value=5.3e+02 Score=26.56 Aligned_cols=108 Identities=15% Similarity=0.134 Sum_probs=55.5
Q ss_pred CCeEEEEeecCCCccccccccceeEEEEEECCCceEEE-ecCCCCcccccccccccceeeEEEeCCeEEEEEEccccCCC
Q 046787 216 NGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKE-LNVPDELKTDELAYGREQKLFIGALDQKLALMHYYTQWYNS 294 (412)
Q Consensus 216 ~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~-i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~ 294 (412)
+--||..+... .|..|+++.++|-. +..-. .+.. -+.+-.++|-|++ +..
T Consensus 145 scDly~~gsg~-------------evYRlNLEqGrfL~P~~~~~----~~lN-----~v~in~~hgLla~-Gt~------ 195 (703)
T KOG2321|consen 145 SCDLYLVGSGS-------------EVYRLNLEQGRFLNPFETDS----GELN-----VVSINEEHGLLAC-GTE------ 195 (703)
T ss_pred CccEEEeecCc-------------ceEEEEcccccccccccccc----ccce-----eeeecCccceEEe-ccc------
Confidence 34477666553 48999999998842 32221 1111 0334444554443 333
Q ss_pred CCCCcEEEEEEeecCCCcceeEEEEeeccCC---------cccc--EEEEecCCEEEEEEcCCeEEEEECCCCcEEE
Q 046787 295 PSYDGCCIWMMKEYGLGESWTKQFKIDLRLG---------LGKM--AGLRRNGEMLLVTRYNEELVSFNTVNRKMQK 360 (412)
Q Consensus 295 ~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~---------~~~p--~~~~~~g~~ill~~~~~~l~~yd~~t~~~~~ 360 (412)
...++.|-..... .+-+++.... ...+ +.+..+|=-+=+.+..+.++.||+.+.+--.
T Consensus 196 --~g~VEfwDpR~ks------rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~ 264 (703)
T KOG2321|consen 196 --DGVVEFWDPRDKS------RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL 264 (703)
T ss_pred --CceEEEecchhhh------hheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee
Confidence 3688888876521 1122222111 1122 3444333223344667889999998877433
No 117
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=32.86 E-value=26 Score=13.67 Aligned_cols=7 Identities=43% Similarity=0.776 Sum_probs=4.4
Q ss_pred CCCCCCc
Q 046787 393 TPPFNAT 399 (412)
Q Consensus 393 ~~~~~~~ 399 (412)
.|.||++
T Consensus 1 ~pafnsw 7 (8)
T PF08260_consen 1 DPAFNSW 7 (8)
T ss_pred Ccccccc
Confidence 3677765
No 118
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=32.29 E-value=5.4e+02 Score=25.94 Aligned_cols=32 Identities=13% Similarity=0.189 Sum_probs=22.9
Q ss_pred EEEEecCCEEEEEEcCC------------------eEEEEECCCCcEEEE
Q 046787 330 AGLRRNGEMLLVTRYNE------------------ELVSFNTVNRKMQKL 361 (412)
Q Consensus 330 ~~~~~~g~~ill~~~~~------------------~l~~yd~~t~~~~~v 361 (412)
..+...++.|++...++ .++.+|.+|++..+-
T Consensus 222 pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~ 271 (488)
T cd00216 222 PTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWF 271 (488)
T ss_pred eeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEE
Confidence 34444567888875332 699999999998765
No 119
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=31.63 E-value=2.1e+02 Score=29.32 Aligned_cols=41 Identities=32% Similarity=0.379 Sum_probs=29.0
Q ss_pred CCCCCCCCCCcEE--EEeeccEEEEeeeccCCCceeEEEEcCcCccee
Q 046787 89 DLPFENKPDSFNV--IGICYGLVCLLDYHQKGLSKSVIVWNPSLESCV 134 (412)
Q Consensus 89 ~~p~~~~~~~~~i--~~s~~GLlll~~~~~~~~~~~~~V~NP~T~~~~ 134 (412)
.-||........+ +..|||||++... .+.+-.|+|-+++..
T Consensus 168 L~P~~~~~~~lN~v~in~~hgLla~Gt~-----~g~VEfwDpR~ksrv 210 (703)
T KOG2321|consen 168 LNPFETDSGELNVVSINEEHGLLACGTE-----DGVVEFWDPRDKSRV 210 (703)
T ss_pred ccccccccccceeeeecCccceEEeccc-----CceEEEecchhhhhh
Confidence 3455544334444 4799999998875 588899999988754
No 120
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=29.30 E-value=6.2e+02 Score=25.67 Aligned_cols=70 Identities=13% Similarity=0.194 Sum_probs=42.6
Q ss_pred CCcEEEEEEeecCCCcceeEEEEeeccCCccccEEEEecCCEEEEEEcCCeEEEEECCCCcEEEEEEecccceEEEeeee
Q 046787 297 YDGCCIWMMKEYGLGESWTKQFKIDLRLGLGKMAGLRRNGEMLLVTRYNEELVSFNTVNRKMQKLGIYGETWSFFLDTYV 376 (412)
Q Consensus 297 ~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~g~~ill~~~~~~l~~yd~~t~~~~~v~~~~~~~~~~~~~y~ 376 (412)
...+.+|. + .+..|+++..-+ ..-.++++.| .|-+.+..++.++.|.+++.+-.+...+ ....++.|-
T Consensus 389 dk~v~lW~-~---~k~~wt~~~~d~-----~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~--~~ls~v~ys 456 (626)
T KOG2106|consen 389 DKHVRLWN-D---HKLEWTKIIEDP-----AECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDN--EQLSVVRYS 456 (626)
T ss_pred cceEEEcc-C---CceeEEEEecCc-----eeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecC--CceEEEEEc
Confidence 35677777 2 356788764221 1345566665 6667777888999999888777665542 223344454
Q ss_pred ec
Q 046787 377 ES 378 (412)
Q Consensus 377 ~s 378 (412)
++
T Consensus 457 p~ 458 (626)
T KOG2106|consen 457 PD 458 (626)
T ss_pred CC
Confidence 43
No 121
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=28.99 E-value=87 Score=30.51 Aligned_cols=67 Identities=10% Similarity=0.092 Sum_probs=40.2
Q ss_pred CCeEEEEEEccccCCCCCCCcEEEEEEeecCCCcceeEEEEeeccCCccccEEEEecCCEEEEEEcCCeEEEEECCCCcE
Q 046787 279 DQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQFKIDLRLGLGKMAGLRRNGEMLLVTRYNEELVSFNTVNRKM 358 (412)
Q Consensus 279 ~g~L~l~~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~g~~ill~~~~~~l~~yd~~t~~~ 358 (412)
||.-.+++.. ..++.+|-+++.. .+.|.-+.. + --.-+++..||..++..+.+.++..||.+++.-
T Consensus 323 Dg~~~V~Gs~--------dr~i~~wdlDgn~-~~~W~gvr~-~----~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d 388 (519)
T KOG0293|consen 323 DGFRFVTGSP--------DRTIIMWDLDGNI-LGNWEGVRD-P----KVHDLAITYDGKYVLLVTVDKKIRLYNREARVD 388 (519)
T ss_pred CCceeEecCC--------CCcEEEecCCcch-hhccccccc-c----eeEEEEEcCCCcEEEEEecccceeeechhhhhh
Confidence 5555555544 3788999998653 457876541 1 002345556777777666666677777766544
Q ss_pred E
Q 046787 359 Q 359 (412)
Q Consensus 359 ~ 359 (412)
+
T Consensus 389 r 389 (519)
T KOG0293|consen 389 R 389 (519)
T ss_pred h
Confidence 3
No 122
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=28.78 E-value=5.5e+02 Score=24.94 Aligned_cols=17 Identities=12% Similarity=0.298 Sum_probs=14.6
Q ss_pred CCeEEEEECCCCcEEEE
Q 046787 345 NEELVSFNTVNRKMQKL 361 (412)
Q Consensus 345 ~~~l~~yd~~t~~~~~v 361 (412)
+++++.||+.|+..+.+
T Consensus 198 ~GRl~~YD~~tK~~~VL 214 (376)
T KOG1520|consen 198 TGRLFRYDPSTKVTKVL 214 (376)
T ss_pred ccceEEecCcccchhhh
Confidence 57899999999998665
No 123
>PF08683 CAMSAP_CKK: Microtubule-binding calmodulin-regulated spectrin-associated; InterPro: IPR014797 This is the C-terminal domain of a family of eumetazoan proteins collectively defined as calmodulin-regulated spectrin-associated, or CAMSAP, proteins. CAMSAP proteins carry an N-terminal region that includes the CH domain, a central region including a predicted coiled-coil and this C-terminal, or CKK, domain - defined as being present in CAMSAP, KIAA1078 and KIAA1543, The C-terminal domain is the part of the CAMSAP proteins that binds to microtubules. The domain appears to act by producing inhibition of neurite extension, probably by blocking microtubule function. CKK represents a domain that has evolved with the metazoa []. The structure of a murine hypothetical protein from RIKEN cDNA has shown the domain to adopt a mainly beta barrel structure with an associated alpha-helical hairpin. ; PDB: 1UGJ_A.
Probab=27.99 E-value=2e+02 Score=23.07 Aligned_cols=56 Identities=16% Similarity=0.126 Sum_probs=30.5
Q ss_pred ccEEEEeeeccCCCceeEEEEcCcCcceeecCC--CCcCCCcceEEEEeeeCCCCCEEEE
Q 046787 106 YGLVCLLDYHQKGLSKSVIVWNPSLESCVRIMF--KFTAANFESVHGFGFDPKSVDYKVV 163 (412)
Q Consensus 106 ~GLlll~~~~~~~~~~~~~V~NP~T~~~~~LP~--p~~~~~~~~~~~~g~d~~~~~ykVv 163 (412)
+=+||+.+.. ...+.+|.+||.+.+...+-. |..........-+-||..++.|+.+
T Consensus 49 hflILfrd~~--~~fRglY~~~~~~~~~~ki~G~gP~~i~~~mv~~~~KYdSg~K~F~~i 106 (123)
T PF08683_consen 49 HFLILFRDAG--CQFRGLYSYDPESEELVKIYGTGPRVITPSMVDKFYKYDSGSKQFKPI 106 (123)
T ss_dssp -EEEEESSSS---SEEEEEEE-TTSS-EEEEESSS-SEE-TTTEEEEEEEETTTTEEEE-
T ss_pred eEEEEEecCC--CceEEEEEEeCCCCeEEEEEccCcCccCHHHHHHHhcccccCceeeec
Confidence 3455666321 125788999999988777655 3322223445556677767777665
No 124
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=27.26 E-value=3.8e+02 Score=25.13 Aligned_cols=67 Identities=12% Similarity=0.081 Sum_probs=42.4
Q ss_pred CCeEEEEEEccccCCCCCCCcEEEEEEeecCCCcceeEEEEeeccCCccccEEEEecCCEEEEEEcCCeEEEEECCCCcE
Q 046787 279 DQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQFKIDLRLGLGKMAGLRRNGEMLLVTRYNEELVSFNTVNRKM 358 (412)
Q Consensus 279 ~g~L~l~~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~g~~ill~~~~~~l~~yd~~t~~~ 358 (412)
+|.+.+-...+ ..+-+|...+.. +.-|+.+-. ...---+-...++..|+-...+.++..+|.++++-
T Consensus 58 ~gs~~aSgG~D--------r~I~LWnv~gdc-eN~~~lkgH----sgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~ 124 (338)
T KOG0265|consen 58 DGSCFASGGSD--------RAIVLWNVYGDC-ENFWVLKGH----SGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKR 124 (338)
T ss_pred CCCeEeecCCc--------ceEEEEeccccc-cceeeeccc----cceeEeeeeccCCCEEEEecCCceEEEEeccccee
Confidence 66666655553 788899866432 556877611 00001122235777887777788899999999875
No 125
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=27.08 E-value=6.3e+02 Score=25.10 Aligned_cols=34 Identities=12% Similarity=0.171 Sum_probs=26.5
Q ss_pred cEEEEeeccEEEEeeeccCCCceeEEEEcCcCcceeec
Q 046787 99 FNVIGICYGLVCLLDYHQKGLSKSVIVWNPSLESCVRI 136 (412)
Q Consensus 99 ~~i~~s~~GLlll~~~~~~~~~~~~~V~NP~T~~~~~L 136 (412)
+.+..||+|-.++.... +..+.||++-|++++..
T Consensus 206 l~~avS~Dgkylatgg~----d~~v~Iw~~~t~ehv~~ 239 (479)
T KOG0299|consen 206 LTLAVSSDGKYLATGGR----DRHVQIWDCDTLEHVKV 239 (479)
T ss_pred EEEEEcCCCcEEEecCC----CceEEEecCcccchhhc
Confidence 45567999999877652 46777999999988776
No 126
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=26.98 E-value=6e+02 Score=25.69 Aligned_cols=28 Identities=18% Similarity=0.330 Sum_probs=19.7
Q ss_pred EEEEecCCEEEEEEcCCeEEEEECCCCc
Q 046787 330 AGLRRNGEMLLVTRYNEELVSFNTVNRK 357 (412)
Q Consensus 330 ~~~~~~g~~ill~~~~~~l~~yd~~t~~ 357 (412)
+++.++|-.+......++++.||++..+
T Consensus 256 vaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 256 VAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred eeecCCceEEEeecCCceEEEEecccCC
Confidence 5666676555455557789999998765
No 127
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=26.45 E-value=5.3e+02 Score=24.93 Aligned_cols=28 Identities=14% Similarity=0.272 Sum_probs=17.7
Q ss_pred EEEecCCEEEEEEcCCeEEEEECCCCcE
Q 046787 331 GLRRNGEMLLVTRYNEELVSFNTVNRKM 358 (412)
Q Consensus 331 ~~~~~g~~ill~~~~~~l~~yd~~t~~~ 358 (412)
.+.++|..+|+...++.+-.+|+.+++.
T Consensus 43 ~~s~Dgr~~yv~~rdg~vsviD~~~~~~ 70 (369)
T PF02239_consen 43 KFSPDGRYLYVANRDGTVSVIDLATGKV 70 (369)
T ss_dssp E-TT-SSEEEEEETTSEEEEEETTSSSE
T ss_pred EecCCCCEEEEEcCCCeEEEEECCcccE
Confidence 3445666677766666777777777764
No 128
>PF15408 PH_7: Pleckstrin homology domain
Probab=26.39 E-value=16 Score=26.88 Aligned_cols=23 Identities=30% Similarity=0.781 Sum_probs=18.6
Q ss_pred ccceeeeecchhhhhhhcCcccc
Q 046787 20 KSVSEFRCVCKSWCALINDPTFI 42 (412)
Q Consensus 20 ksl~r~r~VcK~W~~li~~p~F~ 42 (412)
+.....+-|||.|...+.+|+|.
T Consensus 77 ~~FA~S~~~~~~Wi~~mN~~s~~ 99 (104)
T PF15408_consen 77 QCFASSKKVCQSWIQVMNSPSFR 99 (104)
T ss_pred hhhhhHHHHHHHHHHHhcChhhh
Confidence 44556677999999999999984
No 129
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=25.04 E-value=2e+02 Score=25.89 Aligned_cols=56 Identities=18% Similarity=0.179 Sum_probs=37.1
Q ss_pred eeccEEEEeeeccCCCceeEEEEcCcCcceeec--CCCCcCCCcceEEEEeeeCCCCCEEEEEE
Q 046787 104 ICYGLVCLLDYHQKGLSKSVIVWNPSLESCVRI--MFKFTAANFESVHGFGFDPKSVDYKVVRI 165 (412)
Q Consensus 104 s~~GLlll~~~~~~~~~~~~~V~NP~T~~~~~L--P~p~~~~~~~~~~~~g~d~~~~~ykVv~~ 165 (412)
..+|.|..... ..++|-.||.|+.-..+ .+.. .......++|.|+|..+.-+||.-
T Consensus 36 pa~G~LYgl~~-----~g~lYtIn~~tG~aT~vg~s~~~-~al~g~~~gvDFNP~aDRlRvvs~ 93 (236)
T PF14339_consen 36 PANGQLYGLGS-----TGRLYTINPATGAATPVGASPLT-VALSGTAFGVDFNPAADRLRVVSN 93 (236)
T ss_pred cCCCCEEEEeC-----CCcEEEEECCCCeEEEeeccccc-ccccCceEEEecCcccCcEEEEcc
Confidence 45666655433 48899999999987776 2211 111234788889998888777743
No 130
>PRK04043 tolB translocation protein TolB; Provisional
Probab=24.95 E-value=6.8e+02 Score=24.70 Aligned_cols=192 Identities=7% Similarity=0.024 Sum_probs=99.0
Q ss_pred ceeEEEEcCcCcceeecCCCCcCCCcceEEEEeeeCCCCCEEEEEEEEEecccccccCCCCCe-EEEEECCCCCceecCC
Q 046787 120 SKSVIVWNPSLESCVRIMFKFTAANFESVHGFGFDPKSVDYKVVRIVVRDHFIIGVRDAPRPV-VQVFALKVGSWRNVTT 198 (412)
Q Consensus 120 ~~~~~V~NP~T~~~~~LP~p~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~-~~vyss~t~~Wr~~~~ 198 (412)
...+++.|..|++-+.|-..... .. ...+.| +.=+++....... .. +++++..++.++.+..
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~g~---~~--~~~~SP--DG~~la~~~~~~g----------~~~Iy~~dl~~g~~~~LT~ 274 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQGM---LV--VSDVSK--DGSKLLLTMAPKG----------QPDIYLYDTNTKTLTQITN 274 (419)
T ss_pred CCEEEEEECCCCcEEEEecCCCc---EE--eeEECC--CCCEEEEEEccCC----------CcEEEEEECCCCcEEEccc
Confidence 35789999999888777542111 11 122333 2222332221111 33 8888999999988843
Q ss_pred CCCCceeeecCCCceEECC-eEEEEeecCCCccccccccceeEEEEEECCCceEEEecCCCCcccccccccccceeeEEE
Q 046787 199 GDTSLCRITVKTPQAYVNG-TLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKELNVPDELKTDELAYGREQKLFIGA 277 (412)
Q Consensus 199 ~~~p~~~~~~~~~~v~~~G-~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~~~~~l~~ 277 (412)
.+. . .......-|| .||+.....+. ..|...|+.+...+.+-.-... . ....
T Consensus 275 --~~~-~--d~~p~~SPDG~~I~F~Sdr~g~----------~~Iy~~dl~~g~~~rlt~~g~~-----~------~~~S- 327 (419)
T PRK04043 275 --YPG-I--DVNGNFVEDDKRIVFVSDRLGY----------PNIFMKKLNSGSVEQVVFHGKN-----N------SSVS- 327 (419)
T ss_pred --CCC-c--cCccEECCCCCEEEEEECCCCC----------ceEEEEECCCCCeEeCccCCCc-----C------ceEC-
Confidence 221 0 1111223356 67877755432 4688899988877654321111 1 1112
Q ss_pred eCCe-EEEEEEccccCCCCCCCcEEEEEEeecCCCcceeEEEEeeccCCccccEEEEecCCEEEEEEc---CCeEEEEEC
Q 046787 278 LDQK-LALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTKQFKIDLRLGLGKMAGLRRNGEMLLVTRY---NEELVSFNT 353 (412)
Q Consensus 278 ~~g~-L~l~~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~g~~ill~~~---~~~l~~yd~ 353 (412)
-+|+ |.++..... .+......+||+++-.+ ..+..+.. ........+.+||..|++... ...+..+++
T Consensus 328 PDG~~Ia~~~~~~~--~~~~~~~~~I~v~d~~~--g~~~~LT~----~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l 399 (419)
T PRK04043 328 TYKNYIVYSSRETN--NEFGKNTFNLYLISTNS--DYIRRLTA----NGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRL 399 (419)
T ss_pred CCCCEEEEEEcCCC--cccCCCCcEEEEEECCC--CCeEECCC----CCCcCCeEECCCCCEEEEEEccCCcEEEEEEec
Confidence 2444 444443320 00011347899987422 33433221 112223456778888877653 234888888
Q ss_pred CCCcEEEEEE
Q 046787 354 VNRKMQKLGI 363 (412)
Q Consensus 354 ~t~~~~~v~~ 363 (412)
..++-..+..
T Consensus 400 ~g~~~~~l~~ 409 (419)
T PRK04043 400 NYNKSFLFPL 409 (419)
T ss_pred CCCeeEEeec
Confidence 8776665643
No 131
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=24.54 E-value=4.6e+02 Score=22.57 Aligned_cols=56 Identities=13% Similarity=0.149 Sum_probs=31.8
Q ss_pred CcEEEEEEeecCCCcceeEEEEeeccCCccccEEEEecCCEEEEEEcCCeEEEEECCCCcEE
Q 046787 298 DGCCIWMMKEYGLGESWTKQFKIDLRLGLGKMAGLRRNGEMLLVTRYNEELVSFNTVNRKMQ 359 (412)
Q Consensus 298 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~g~~ill~~~~~~l~~yd~~t~~~~ 359 (412)
..+.+|.+... .....+......-.-+.+.+++..+++...++.+..||..+.+..
T Consensus 157 ~~i~i~d~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~ 212 (289)
T cd00200 157 GTIKLWDLRTG------KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCL 212 (289)
T ss_pred CcEEEEEcccc------ccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCcee
Confidence 67888887631 111222211111123445556667777766788999999875543
No 132
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=24.10 E-value=6.1e+02 Score=23.88 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=26.6
Q ss_pred CCeEEEEeecCCCccccccccceeEEEEEECCCceEEEecCCCCc
Q 046787 216 NGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKELNVPDEL 260 (412)
Q Consensus 216 ~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~ 260 (412)
.+.|||.--.. ..|+.+|+.+..-+.++.|...
T Consensus 36 ~~~L~w~DI~~------------~~i~r~~~~~g~~~~~~~p~~~ 68 (307)
T COG3386 36 RGALLWVDILG------------GRIHRLDPETGKKRVFPSPGGF 68 (307)
T ss_pred CCEEEEEeCCC------------CeEEEecCCcCceEEEECCCCc
Confidence 35688887655 4799999999999999988765
No 133
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=23.99 E-value=5.8e+02 Score=27.04 Aligned_cols=97 Identities=14% Similarity=0.189 Sum_probs=49.0
Q ss_pred eEEEEEECCCceEEEecCCCCcc--cccccccccceeeEEEeCCeEEEEEEccccCCCCCCCcEEEEEEeecCCCcceeE
Q 046787 239 LVLLAFDLREEVFKELNVPDELK--TDELAYGREQKLFIGALDQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTK 316 (412)
Q Consensus 239 ~~il~fD~~~e~~~~i~~P~~~~--~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~ 316 (412)
+.|...|+.+.+-. +|.... .+.. -.++...+.-.++.... ..-+++|.++....-.+|.-
T Consensus 40 d~Vi~idv~t~~~~---l~s~~~ed~d~i-------ta~~l~~d~~~L~~a~r-------s~llrv~~L~tgk~irswKa 102 (775)
T KOG0319|consen 40 DRVIIIDVATGSIA---LPSGSNEDEDEI-------TALALTPDEEVLVTASR-------SQLLRVWSLPTGKLIRSWKA 102 (775)
T ss_pred ceEEEEEccCCcee---cccCCccchhhh-------heeeecCCccEEEEeec-------cceEEEEEcccchHhHhHhh
Confidence 46888999888775 443221 1111 23333333333333333 47899999996434457877
Q ss_pred EEEeeccCCccccEEEEecCCEEEEE-EcCCeEEEEECCCCcE
Q 046787 317 QFKIDLRLGLGKMAGLRRNGEMLLVT-RYNEELVSFNTVNRKM 358 (412)
Q Consensus 317 ~~~i~~~~~~~~p~~~~~~g~~ill~-~~~~~l~~yd~~t~~~ 358 (412)
.+.=+. ..+.+.+.| .++-. .-++.+-++|.+.+..
T Consensus 103 ~He~Pv-----i~ma~~~~g-~LlAtggaD~~v~VWdi~~~~~ 139 (775)
T KOG0319|consen 103 IHEAPV-----ITMAFDPTG-TLLATGGADGRVKVWDIKNGYC 139 (775)
T ss_pred ccCCCe-----EEEEEcCCC-ceEEeccccceEEEEEeeCCEE
Confidence 553321 112333333 22211 2345566666655543
No 134
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.90 E-value=6.2e+02 Score=23.87 Aligned_cols=98 Identities=8% Similarity=0.077 Sum_probs=53.1
Q ss_pred eEEEEEECCCceEEEe-----cCCCCcccccccccccceeeEEEeCCeEEEEEEccccCCCCCCCcEEEEEEeecCCCcc
Q 046787 239 LVLLAFDLREEVFKEL-----NVPDELKTDELAYGREQKLFIGALDQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGES 313 (412)
Q Consensus 239 ~~il~fD~~~e~~~~i-----~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~~~~l~iW~l~~~~~~~~ 313 (412)
..|-.+|.++.+.+.+ .-|..+ +|....+---..+++|.+..... ..++.||.++-...+.+
T Consensus 78 SHVH~yd~e~~~VrLLWkesih~~~~W------aGEVSdIlYdP~~D~LLlAR~DG-------h~nLGvy~ldr~~g~~~ 144 (339)
T PF09910_consen 78 SHVHEYDTENDSVRLLWKESIHDKTKW------AGEVSDILYDPYEDRLLLARADG-------HANLGVYSLDRRTGKAE 144 (339)
T ss_pred ceEEEEEcCCCeEEEEEecccCCcccc------ccchhheeeCCCcCEEEEEecCC-------cceeeeEEEcccCCcee
Confidence 3588999998876654 223222 22111122234588999887664 78999999995322222
Q ss_pred eeEEEEeeccCCccccEEEEecCCEEEEE-----EcCCeEEEEECCCCcE
Q 046787 314 WTKQFKIDLRLGLGKMAGLRRNGEMLLVT-----RYNEELVSFNTVNRKM 358 (412)
Q Consensus 314 W~~~~~i~~~~~~~~p~~~~~~g~~ill~-----~~~~~l~~yd~~t~~~ 358 (412)
|.. +.+ .+ -+..-. |..++. ..-..+.+||+.+++|
T Consensus 145 ~L~----~~p-s~---KG~~~~-D~a~F~i~~~~~g~~~i~~~Dli~~~~ 185 (339)
T PF09910_consen 145 KLS----SNP-SL---KGTLVH-DYACFGINNFHKGVSGIHCLDLISGKW 185 (339)
T ss_pred ecc----CCC-Cc---CceEee-eeEEEeccccccCCceEEEEEccCCeE
Confidence 221 111 11 111101 223332 1234599999999999
No 135
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=23.54 E-value=8.7e+02 Score=25.47 Aligned_cols=154 Identities=15% Similarity=0.245 Sum_probs=0.0
Q ss_pred EEEEEEEecccccccCCCCCeEEEEECCCCCceecCC--CCCCceeeecCCCceEECCeEEEEeecCCCcccccccccee
Q 046787 162 VVRIVVRDHFIIGVRDAPRPVVQVFALKVGSWRNVTT--GDTSLCRITVKTPQAYVNGTLHWVGYDTESHHVAQGIQRRL 239 (412)
Q Consensus 162 Vv~~~~~~~~~~~~~~~~~~~~~vyss~t~~Wr~~~~--~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~ 239 (412)
++++..... +.||.+.-.- ..... ...|........-....++..-+++.... .
T Consensus 396 ~Ia~st~~~------------~~iy~L~~~~-~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~-----------~ 451 (691)
T KOG2048|consen 396 LIAISTVSR------------TKIYRLQPDP-NVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNI-----------F 451 (691)
T ss_pred EEEEeeccc------------eEEEEeccCc-ceeEEEeccchhhhccceeeEEEecCceEEEEeccc-----------c
Q ss_pred EEEEEECCCceEEEe-cCCCCcccccccccccceeeEEEeCCeEEEEEEccccCCCCCCCcEEEEEEeecCCCcceeE-E
Q 046787 240 VLLAFDLREEVFKEL-NVPDELKTDELAYGREQKLFIGALDQKLALMHYYTQWYNSPSYDGCCIWMMKEYGLGESWTK-Q 317 (412)
Q Consensus 240 ~il~fD~~~e~~~~i-~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~~~~l~iW~l~~~~~~~~W~~-~ 317 (412)
.+..|+.+++++..+ ..-+....+... .-..-.+|.-..+.... ..+.+|.|+. ....|.+ .
T Consensus 452 ~le~~el~~ps~kel~~~~~~~~~~~I~------~l~~SsdG~yiaa~~t~--------g~I~v~nl~~--~~~~~l~~r 515 (691)
T KOG2048|consen 452 SLEEFELETPSFKELKSIQSQAKCPSIS------RLVVSSDGNYIAAISTR--------GQIFVYNLET--LESHLLKVR 515 (691)
T ss_pred eeEEEEecCcchhhhhccccccCCCcce------eEEEcCCCCEEEEEecc--------ceEEEEEccc--ceeecchhc
Q ss_pred EEeeccCCccccEEEE-ecCCEEEEEEcCCeEEEEECCCCcEEE
Q 046787 318 FKIDLRLGLGKMAGLR-RNGEMLLVTRYNEELVSFNTVNRKMQK 360 (412)
Q Consensus 318 ~~i~~~~~~~~p~~~~-~~g~~ill~~~~~~l~~yd~~t~~~~~ 360 (412)
..+.. ...++. .+-+.|++.+.+++++-||++.+++.+
T Consensus 516 ln~~v-----Ta~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ 554 (691)
T KOG2048|consen 516 LNIDV-----TAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTR 554 (691)
T ss_pred cCcce-----eeeeccccccCcEEEEecCCeEEEEecchhhhhh
No 136
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=22.59 E-value=5.8e+02 Score=23.30 Aligned_cols=65 Identities=9% Similarity=0.153 Sum_probs=38.7
Q ss_pred CcEEEEEEeec----CCCcceeEEEEeec-cCCcccc--EEEEecCCEEEEEEcCCeEEEEECCCCcEEEEE
Q 046787 298 DGCCIWMMKEY----GLGESWTKQFKIDL-RLGLGKM--AGLRRNGEMLLVTRYNEELVSFNTVNRKMQKLG 362 (412)
Q Consensus 298 ~~l~iW~l~~~----~~~~~W~~~~~i~~-~~~~~~p--~~~~~~g~~ill~~~~~~l~~yd~~t~~~~~v~ 362 (412)
..+.=|.-.+. ..+..|..+-.+.. ...+... +.+.+..+-|++...++.++..|++++++++..
T Consensus 81 G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~ 152 (325)
T KOG0649|consen 81 GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREY 152 (325)
T ss_pred ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEE
Confidence 34455555443 23456777532221 1112222 344444567878888889999999999998763
No 137
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=22.55 E-value=1.7e+02 Score=16.95 Aligned_cols=24 Identities=8% Similarity=0.187 Sum_probs=15.8
Q ss_pred cEEEEecCCEEEEEEcCCeEEEEE
Q 046787 329 MAGLRRNGEMLLVTRYNEELVSFN 352 (412)
Q Consensus 329 p~~~~~~g~~ill~~~~~~l~~yd 352 (412)
-+.+.+++..|+-...++.+.+||
T Consensus 16 ~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 16 SIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEecccccceeeCCCCEEEEEC
Confidence 345555666666666777787776
No 138
>PF13018 ESPR: Extended Signal Peptide of Type V secretion system
Probab=21.92 E-value=75 Score=17.41 Aligned_cols=15 Identities=20% Similarity=0.470 Sum_probs=12.4
Q ss_pred EEEcCcCcceeecCC
Q 046787 124 IVWNPSLESCVRIMF 138 (412)
Q Consensus 124 ~V~NP~T~~~~~LP~ 138 (412)
+|||.+++.|+..++
T Consensus 7 ~iwn~~~~~~vvvsE 21 (24)
T PF13018_consen 7 LIWNKARGTWVVVSE 21 (24)
T ss_pred EEEECCCCeEEEEee
Confidence 789999999987654
No 139
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=21.24 E-value=2e+02 Score=17.13 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=19.4
Q ss_pred cCCEEEEEE-cCCeEEEEECCCCcEE-EEEE
Q 046787 335 NGEMLLVTR-YNEELVSFNTVNRKMQ-KLGI 363 (412)
Q Consensus 335 ~g~~ill~~-~~~~l~~yd~~t~~~~-~v~~ 363 (412)
+++.+|+.. ..+.+..+|+++.+.. ++..
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 456777754 3567999999877653 3444
No 140
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=20.25 E-value=8.6e+02 Score=24.19 Aligned_cols=117 Identities=9% Similarity=0.002 Sum_probs=0.0
Q ss_pred eEECCeEEEEeecCCCccccccccceeEEEEEECCCceEEEecCCCCcccccccccccceeeEEEeCCeEEEEEEccccC
Q 046787 213 AYVNGTLHWVGYDTESHHVAQGIQRRLVLLAFDLREEVFKELNVPDELKTDELAYGREQKLFIGALDQKLALMHYYTQWY 292 (412)
Q Consensus 213 v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~l~~~~~~~~ 292 (412)
+.-+|..-+.+... ..|..+++.+.....+..+......- ..+.-.-+..+++....
T Consensus 167 fs~~g~~l~~~~~~------------~~i~~~~~~~~~~~~~~~l~~h~~~v--------~~~~fs~d~~~l~s~s~--- 223 (456)
T KOG0266|consen 167 FSPDGRALAAASSD------------GLIRIWKLEGIKSNLLRELSGHTRGV--------SDVAFSPDGSYLLSGSD--- 223 (456)
T ss_pred EcCCCCeEEEccCC------------CcEEEeecccccchhhccccccccce--------eeeEECCCCcEEEEecC---
Q ss_pred CCCCCCcEEEEEEeecCCCcceeEEEEeeccCCccccEEEEecCCEEEEEEcCCeEEEEECCCCcEEEE
Q 046787 293 NSPSYDGCCIWMMKEYGLGESWTKQFKIDLRLGLGKMAGLRRNGEMLLVTRYNEELVSFNTVNRKMQKL 361 (412)
Q Consensus 293 ~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~g~~ill~~~~~~l~~yd~~t~~~~~v 361 (412)
..++.||.+++.+ ..+.++.-....-.-+++.+.|..|+-...++.+.++|.++.+..+.
T Consensus 224 ----D~tiriwd~~~~~-----~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~ 283 (456)
T KOG0266|consen 224 ----DKTLRIWDLKDDG-----RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRK 283 (456)
T ss_pred ----CceEEEeeccCCC-----eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEe
Done!