Query 046788
Match_columns 163
No_of_seqs 195 out of 1139
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 04:29:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046788.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046788hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05381 SCP_PR-1_like SCP_PR-1 100.0 2.8E-44 6.1E-49 248.8 16.2 134 26-163 2-136 (136)
2 cd05384 SCP_PRY1_like SCP_PRY1 100.0 5.1E-40 1.1E-44 225.6 14.1 129 23-159 1-129 (129)
3 cd05382 SCP_GAPR-1_like SCP_GA 100.0 3.2E-40 7E-45 227.2 12.2 130 23-157 1-132 (132)
4 cd05385 SCP_GLIPR-1_like SCP_G 100.0 2.6E-37 5.7E-42 215.9 13.1 125 23-154 1-144 (144)
5 smart00198 SCP SCP / Tpx-1 / A 100.0 2.8E-37 6.1E-42 215.4 12.2 127 24-154 2-144 (144)
6 cd05383 SCP_CRISP SCP_CRISP: S 100.0 4E-37 8.6E-42 213.5 12.8 125 24-154 2-138 (138)
7 cd05559 SCP_HrTT-1 SCP_HrTT-1: 100.0 5.6E-36 1.2E-40 207.3 12.2 123 25-152 1-136 (136)
8 cd00168 SCP SCP: SCP-like extr 100.0 3.1E-35 6.7E-40 199.9 12.2 118 25-152 1-122 (122)
9 KOG3017 Defense-related protei 100.0 1.2E-34 2.6E-39 216.0 8.8 137 23-163 40-198 (225)
10 cd05380 SCP_euk SCP_euk: SCP-l 100.0 9.9E-34 2.1E-38 197.0 9.6 123 25-152 1-144 (144)
11 PF00188 CAP: Cysteine-rich se 99.9 5.3E-23 1.2E-27 137.1 8.5 119 29-151 1-124 (124)
12 TIGR02909 spore_YkwD uncharact 99.9 1.2E-20 2.7E-25 129.0 11.5 107 23-151 3-125 (127)
13 cd05379 SCP_bacterial SCP_bact 99.7 3.9E-17 8.6E-22 110.0 10.7 104 26-151 2-121 (122)
14 COG2340 Uncharacterized protei 99.3 6.2E-12 1.3E-16 92.7 8.7 100 21-139 77-192 (207)
15 PF11054 Surface_antigen: Spor 89.2 2.7 5.9E-05 31.7 7.2 133 25-163 35-218 (254)
16 PF07172 GRP: Glycine rich pro 82.5 1.1 2.5E-05 28.8 2.1 12 1-12 1-12 (95)
17 PF15240 Pro-rich: Proline-ric 81.7 0.65 1.4E-05 33.4 0.8 21 6-26 1-21 (179)
18 PF12273 RCR: Chitin synthesis 79.7 3.8 8.3E-05 27.8 4.1 24 28-51 18-41 (130)
19 PF13956 Ibs_toxin: Toxin Ibs, 69.0 3.2 6.9E-05 18.1 1.0 13 1-13 1-13 (19)
20 KOG0286 G-protein beta subunit 55.2 5.6 0.00012 31.1 0.8 34 122-158 79-112 (343)
21 COG2143 Thioredoxin-related pr 54.2 24 0.00052 25.1 3.7 38 1-38 1-38 (182)
22 COG3026 RseB Negative regulato 53.8 24 0.00052 27.6 4.0 37 4-40 6-42 (320)
23 PF13677 MotB_plug: Membrane M 50.2 40 0.00087 19.4 3.7 10 28-37 46-55 (58)
24 PF08139 LPAM_1: Prokaryotic m 49.6 13 0.00028 17.7 1.3 13 4-16 9-21 (25)
25 TIGR03044 PS_II_psb27 photosys 46.2 39 0.00085 23.2 3.7 25 23-47 36-60 (135)
26 KOG4439 RNA polymerase II tran 39.8 30 0.00065 30.6 2.9 41 22-62 782-844 (901)
27 PF02402 Lysis_col: Lysis prot 37.6 16 0.00034 20.0 0.6 11 1-11 1-11 (46)
28 PRK09810 entericidin A; Provis 37.4 37 0.0008 18.3 2.0 11 1-11 1-11 (41)
29 PF10731 Anophelin: Thrombin i 37.0 36 0.00078 19.9 2.1 15 1-15 1-15 (65)
30 PF04648 MF_alpha: Yeast matin 32.8 25 0.00053 13.9 0.7 6 158-163 8-13 (13)
31 PF07438 DUF1514: Protein of u 31.2 73 0.0016 18.9 2.7 33 3-35 3-36 (66)
32 PF13780 DUF4176: Domain of un 31.1 1E+02 0.0023 18.8 3.6 20 142-162 32-51 (76)
33 PF03295 Pox_TAA1: Poxvirus tr 29.7 61 0.0013 19.0 2.2 19 23-41 24-42 (63)
34 PRK04561 tatA twin arginine tr 28.6 1.4E+02 0.003 18.3 3.8 36 5-40 9-44 (75)
35 PRK14859 tatA twin arginine tr 27.7 82 0.0018 18.6 2.6 34 6-39 10-43 (63)
36 PF04863 EGF_alliinase: Alliin 26.3 73 0.0016 18.3 2.1 16 44-59 1-16 (56)
37 PRK14858 tatA twin arginine tr 26.3 67 0.0014 21.2 2.3 33 7-39 11-43 (108)
38 PRK02958 tatA twin arginine tr 26.1 1E+02 0.0022 18.9 2.8 34 6-39 10-43 (73)
39 PRK00720 tatA twin arginine tr 26.1 99 0.0021 19.2 2.8 35 5-39 9-43 (78)
40 KOG0792 Protein tyrosine phosp 26.0 81 0.0017 29.2 3.3 36 116-154 950-986 (1144)
41 PRK00575 tatA twin arginine tr 25.9 87 0.0019 20.0 2.6 34 6-39 10-43 (92)
42 PRK00191 tatA twin arginine tr 25.8 92 0.002 19.6 2.7 35 6-40 9-43 (84)
43 PF08194 DIM: DIM protein; In 25.7 1.1E+02 0.0023 16.0 2.5 6 1-6 1-6 (36)
44 PRK00442 tatA twin arginine tr 25.4 98 0.0021 19.8 2.8 34 6-39 10-43 (92)
45 PRK01833 tatA twin arginine tr 24.0 1.2E+02 0.0027 18.5 3.0 35 6-40 10-44 (74)
46 PRK10598 lipoprotein; Provisio 23.6 1.3E+02 0.0028 21.9 3.5 20 23-42 30-49 (186)
47 COG1318 Predicted transcriptio 23.4 71 0.0015 23.0 2.1 19 41-59 39-57 (182)
48 PF08557 Lipid_DES: Sphingolip 23.3 87 0.0019 16.6 1.9 21 24-44 18-38 (39)
49 PF13605 DUF4141: Domain of un 23.1 1.1E+02 0.0024 17.5 2.5 29 7-35 6-41 (55)
50 KOG4228 Protein tyrosine phosp 23.1 86 0.0019 29.1 3.0 37 116-154 620-656 (1087)
51 PF11903 DUF3423: Protein of u 23.0 1.3E+02 0.0028 18.3 2.9 20 41-60 1-20 (72)
52 PRK14860 tatA twin arginine tr 22.9 1.1E+02 0.0023 18.2 2.5 33 7-39 11-43 (64)
53 PRK10318 hypothetical protein; 22.8 2.2E+02 0.0047 19.3 4.2 7 19-25 19-25 (121)
54 PF03032 Brevenin: Brevenin/es 22.5 55 0.0012 18.1 1.1 12 4-15 5-16 (46)
55 TIGR01411 tatAE twin arginine- 22.3 1.3E+02 0.0029 16.5 2.7 32 7-38 9-40 (47)
56 COG1019 Predicted nucleotidylt 21.9 69 0.0015 22.6 1.8 18 28-45 105-122 (158)
57 PF14060 DUF4252: Domain of un 21.9 1.8E+02 0.0038 19.9 3.9 28 30-57 26-53 (155)
58 PRK14861 tatA twin arginine tr 20.6 1.4E+02 0.003 17.5 2.6 33 7-39 12-44 (61)
59 PF07312 DUF1459: Protein of u 20.6 1E+02 0.0022 19.2 2.1 16 1-16 1-16 (84)
60 PRK14857 tatA twin arginine tr 20.4 1.2E+02 0.0025 19.4 2.4 34 6-39 12-45 (90)
61 PF11153 DUF2931: Protein of u 20.1 89 0.0019 23.0 2.2 8 1-8 1-8 (216)
No 1
>cd05381 SCP_PR-1_like SCP_PR-1_like: SCP-like extracellular protein domain, PR-1 like subfamily. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. It also includes CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=100.00 E-value=2.8e-44 Score=248.80 Aligned_cols=134 Identities=51% Similarity=1.014 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhcCCCCCcCCCCCCccceEEeccCCCCCHHHHHHHHHcCCCCCCC
Q 046788 26 EDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSSQGEITAAEFVKMCMDGKPLYDY 105 (163)
Q Consensus 26 ~~iL~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~~~~Geni~~~~~~~~~~~~~v~~W~~e~~~y~~ 105 (163)
++||+.||.+|++++|++|+||++|+..||.||++|+..|...|+.. .+|||+++.......+.++|+.|++|...|++
T Consensus 2 ~~il~~hN~~R~~~~~~~L~Wd~~La~~A~~~a~~~~~~c~~~~~~~-~~GeNi~~~~~~~~~~~~~v~~W~~e~~~y~~ 80 (136)
T cd05381 2 QDFLDAHNAARAAVGVPPLKWDDTLAAYAQRYANQRRGDCALVHSNG-PYGENLFWGSGGNWSAADAVASWVSEKKYYDY 80 (136)
T ss_pred hHHHHHHHHHHHhcCCCcceECHHHHHHHHHHHHHhcCCCCcccCCC-CCCceEEEecCCCCCHHHHHHHHHhccccCCC
Confidence 68999999999999999999999999999999998888899888776 59999998765456789999999999999999
Q ss_pred CCCcccCCCCccchHHHHHHHhcCeeeEEEEEcCC-CCeeEEEEEEecCCCCCCCCCCC
Q 046788 106 NSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNN-NGTLNFVICNYDPRGNVFGQRPY 163 (163)
Q Consensus 106 ~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~-~~~~~~~vC~Y~p~gN~~g~~~Y 163 (163)
..+.+.. +..++|||||||+++++||||++.|.+ ++. ++||+|+|+||+.|++||
T Consensus 81 ~~~~~~~-~~~~~hftq~vw~~t~~vGCa~~~c~~~~~~--~vvC~Y~p~gn~~g~~~Y 136 (136)
T cd05381 81 DSNTCAA-GKMCGHYTQVVWRNTTRVGCARVTCDNGGGV--FIICNYDPPGNYIGQRPY 136 (136)
T ss_pred CCCCcCC-CccchHHHHHHHHhcCEeceEEEEeCCCCcE--EEEEEeeCCCCCCCCCCC
Confidence 8887766 668999999999999999999999987 445 899999999999999998
No 2
>cd05384 SCP_PRY1_like SCP_PRY1_like: SCP-like extracellular protein domain, PRY1-like sub-family restricted to fungi. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. PRY1 is a yeast protein that is up-regulated in core ESCRT mutants. This PRY1-like group also contains fruiting body proteins SC7/14 from Schizophyllum commune.
Probab=100.00 E-value=5.1e-40 Score=225.55 Aligned_cols=129 Identities=31% Similarity=0.578 Sum_probs=113.0
Q ss_pred CchHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhcCCCCCcCCCCCCccceEEeccCCCCCHHHHHHHHHcCCCC
Q 046788 23 NKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSSQGEITAAEFVKMCMDGKPL 102 (163)
Q Consensus 23 ~~~~~iL~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~~~~Geni~~~~~~~~~~~~~v~~W~~e~~~ 102 (163)
+.++.||+.||.+|+.++|+||+||++|+..||.||++|+..|.+.|+.. .+|||++.+. .++.++|+.|++|...
T Consensus 1 ~~~~~iL~~hN~~R~~~g~~~L~w~~~La~~A~~~a~~c~~~~~~~~~~~-~~geNi~~~~---~~~~~~v~~W~~e~~~ 76 (129)
T cd05384 1 SFASSILDAHNSKRALHGVQPLTWNNTLAEYAQDYANSYDCSGNLAHSGG-PYGENLAAGY---PSGTSAVDAWYDEIED 76 (129)
T ss_pred CHHHHHHHHHHHHHHHcCCCcCccCHHHHHHHHHHHHHhccCCceecCCC-CCCcEEEEec---CCHHHHHHHHHhhhhh
Confidence 46899999999999999999999999999999999997776666888876 6999998754 3688999999999999
Q ss_pred CCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEcCCCCeeEEEEEEecCCCCCCC
Q 046788 103 YDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFG 159 (163)
Q Consensus 103 y~~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~~~~~~~vC~Y~p~gN~~g 159 (163)
|++..+.+ +..++|||||||+++++||||++.|+... ..++||+|+|+||+.|
T Consensus 77 y~~~~~~~---~~~~~h~tqmvw~~t~~vGCa~~~c~~~~-~~~~vC~Y~p~Gn~~g 129 (129)
T cd05384 77 YDYSNPGF---SEATGHFTQLVWKSTTQVGCAYKDCGGAW-GWYIVCEYDPAGNVIG 129 (129)
T ss_pred CCCCCCCC---CCcccchhhhhhhccceeeeEEEEeCCCC-eEEEEEEEECCCCCCc
Confidence 99987554 34799999999999999999999998732 2389999999999876
No 3
>cd05382 SCP_GAPR-1_like SCP_GAPR-1_like: SCP-like extracellular protein domain, golgi-associated plant pathogenesis related protein (GAPR)-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. GAPR-1 and GLIPR-2 appear to be synonyms.
Probab=100.00 E-value=3.2e-40 Score=227.16 Aligned_cols=130 Identities=33% Similarity=0.539 Sum_probs=116.3
Q ss_pred CchHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhcCCCCCcCCCCCCccceEEeccC--CCCCHHHHHHHHHcCC
Q 046788 23 NKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSSQ--GEITAAEFVKMCMDGK 100 (163)
Q Consensus 23 ~~~~~iL~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~~~~Geni~~~~~--~~~~~~~~v~~W~~e~ 100 (163)
+++++||+.||.+|+.++|++|+||++|+..||.||++|+..+.+.|+.+..+|||+++... ....+.++|+.|++|.
T Consensus 1 ~~~~~iL~~hN~~R~~~g~~~L~wd~~La~~A~~~a~~c~~~~~~~h~~~~~~GeN~~~~~~~~~~~~~~~~v~~W~~e~ 80 (132)
T cd05382 1 DFQKECLDAHNEYRALHGAPPLKLDKELAKEAQKWAEKLASSGKLQHSSPSGYGENLAYASGSGPDLTGEEAVDSWYNEI 80 (132)
T ss_pred CHHHHHHHHHHHHHHHcCCCcCeeCHHHHHHHHHHHHHhhhcCceeCCCCCCCCceeEEecCCCCCCCHHHHHHHHHhcc
Confidence 47899999999999999999999999999999999998877777888877679999998764 3568899999999999
Q ss_pred CCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEcCCCCeeEEEEEEecCCCCC
Q 046788 101 PLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNV 157 (163)
Q Consensus 101 ~~y~~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~~~~~~~vC~Y~p~gN~ 157 (163)
.+|++..+.. +..++|||||||+++++||||++.|+.+.+ ++||+|+|+||+
T Consensus 81 ~~y~~~~~~~---~~~~gh~tqmvw~~t~~vGCa~~~~~~~~~--~~vC~Y~p~Gn~ 132 (132)
T cd05382 81 KKYDFNKPGF---SSKTGHFTQVVWKSSTELGVGVAKSKKGCV--YVVARYRPAGNV 132 (132)
T ss_pred ccCCCCCCCC---CCCCCCeEEeEecCCCceeeEEEEcCCCCE--EEEEEEeCCCCC
Confidence 9999985544 347999999999999999999999998666 899999999995
No 4
>cd05385 SCP_GLIPR-1_like SCP_GLIPR-1_like: SCP-like extracellular protein domain, glioma pathogenesis-related protein (GLIPR)-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=100.00 E-value=2.6e-37 Score=215.88 Aligned_cols=125 Identities=31% Similarity=0.595 Sum_probs=108.2
Q ss_pred CchHHHHHHHHHHHhhCC-----CCCcccCHHHHHHHHHHHHhhcCCCCCcCCCC-----------CCccceEEeccCCC
Q 046788 23 NKPEDYLKAHNEARASVG-----VGPMSWDYKLADYSHKHAQKLKGNCNLKKPQV-----------SKYSETIAWSSQGE 86 (163)
Q Consensus 23 ~~~~~iL~~hN~~R~~~~-----m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~-----------~~~Geni~~~~~~~ 86 (163)
+++++||+.||.+|+++. |++|+||++|+..||.||+ +|.+.|+.. ..+||||+....+.
T Consensus 1 ~f~~~~L~~HN~~R~~~~p~a~~m~~l~Wd~~La~~Aq~~a~----~C~~~~~~~~~~~~~~~~~~~~~GeNi~~~~~~~ 76 (144)
T cd05385 1 EFIDECVRIHNELRSKVSPPAANMRYMTWDAALAKTARAWAK----KCKFKHNIYLGKRYKCHPKFTSVGENIWLGSIYI 76 (144)
T ss_pred CHHHHHHHHHHHHHhhCCCCcccCcccccCHHHHHHHHHHHh----cCCCCCCchhhcccccccccCcccceeeecccCC
Confidence 478999999999999994 8999999999999999999 898887642 25899998876555
Q ss_pred CCHHHHHHHHHcCCCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEcCCCC---eeEEEEEEecCC
Q 046788 87 ITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNG---TLNFVICNYDPR 154 (163)
Q Consensus 87 ~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~~---~~~~~vC~Y~p~ 154 (163)
..+.++|+.||+|..+|+|..+.+.. .++|||||||++|++||||++.|+.++ ...++||+|+|+
T Consensus 77 ~~~~~av~~W~~e~~~y~~~~~~~~~---~~ghftqmvw~~t~~vGCa~~~c~~~~~~~~~~~vVC~Y~p~ 144 (144)
T cd05385 77 FSPKNAVTSWYNEGKFYDFDTNSCSR---VCGHYTQVVWATSYKVGCAVAFCPNLGGIPNAAIFVCNYAPA 144 (144)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCCC---cccCHHHHHHhhccccceEEEECCCCCCccccEEEEEeCCCC
Confidence 68999999999999999998776643 799999999999999999999998742 234899999994
No 5
>smart00198 SCP SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains. Human glioma pathogenesis-related protein GliPR and the plant pathogenesis-related protein represent functional links between plant defense systems and human immune system. This family has no known function.
Probab=100.00 E-value=2.8e-37 Score=215.44 Aligned_cols=127 Identities=33% Similarity=0.634 Sum_probs=111.4
Q ss_pred chHHHHHHHHHHHhhCC-----------CCCcccCHHHHHHHHHHHHhhcCCCCCcCCCCCCccceEEeccC----CCCC
Q 046788 24 KPEDYLKAHNEARASVG-----------VGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSSQ----GEIT 88 (163)
Q Consensus 24 ~~~~iL~~hN~~R~~~~-----------m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~~~~Geni~~~~~----~~~~ 88 (163)
.|+.||+.||.+|++++ |++|+||++||..||.||+ +|...|+....+|||+++... ....
T Consensus 2 ~~~~iL~~HN~~R~~~a~G~~~~p~a~~m~~l~Wd~~La~~A~~~a~----~C~~~~~~~~~~GeNi~~~~~~~~~~~~~ 77 (144)
T smart00198 2 QQQEILDAHNKLRSQVAKGLLANPAASNMLKLTWDCELASSAQNWAN----QCPFGHSTPRGYGENLAWWSSSTDLPITY 77 (144)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCHHHHHHHHHHHH----hCCCcCCCcCCcCcceEEecccCcccchh
Confidence 57899999999999999 9999999999999999999 999999887689999997653 2357
Q ss_pred HHHHHHHHHcCCCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEcCCCC-eeEEEEEEecCC
Q 046788 89 AAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNG-TLNFVICNYDPR 154 (163)
Q Consensus 89 ~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~~-~~~~~vC~Y~p~ 154 (163)
+.++|+.|++|...|++..+.+...+..++|||||||+++++||||++.|+++. ...++||+|+|+
T Consensus 78 ~~~av~~W~~e~~~y~~~~~~~~~~~~~~~hftqmvw~~s~~vGCa~~~c~~~~~~~~~~vC~Y~P~ 144 (144)
T smart00198 78 ASAAVQLWYDEFQDYGYSSNTCKDTNGKIGHYTQVVWAKTYKVGCGVSNCPDGTKKKTVVVCNYDPP 144 (144)
T ss_pred HHHHHHHHHHHHHHcCCCCCccccCccchhHHHHHHHHhcCCcceEEEECCCCCcceEEEEEecCCC
Confidence 889999999999999998876653245799999999999999999999999864 234899999995
No 6
>cd05383 SCP_CRISP SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Involvement of CRISP in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ t
Probab=100.00 E-value=4e-37 Score=213.53 Aligned_cols=125 Identities=29% Similarity=0.474 Sum_probs=107.8
Q ss_pred chHHHHHHHHHHHhhCC-----CCCcccCHHHHHHHHHHHHhhcCCCCCcCCCC-------CCccceEEeccCCCCCHHH
Q 046788 24 KPEDYLKAHNEARASVG-----VGPMSWDYKLADYSHKHAQKLKGNCNLKKPQV-------SKYSETIAWSSQGEITAAE 91 (163)
Q Consensus 24 ~~~~iL~~hN~~R~~~~-----m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~-------~~~Geni~~~~~~~~~~~~ 91 (163)
.|+.||+.||.+|+.+. |++|+||++||..||.||+ +|.+.|++. ..+|||++... ......+
T Consensus 2 ~~~~il~~HN~~R~~~~p~a~~M~~l~Wd~~La~~A~~~a~----~C~~~~~~~~~~~~~~~~~GeNl~~~~-~~~~~~~ 76 (138)
T cd05383 2 VQKEIVDLHNELRRSVNPTASNMLKMEWNEEAAQNAKKWAN----TCNLTHSPPNGRTIGGITCGENIFMSS-YPRSWSD 76 (138)
T ss_pred HHHHHHHHHHHHhccCCCCcccCcccEeCHHHHHHHHHHHh----cCCCcCCchhhcccCCCCcceeeeccC-CCCCHHH
Confidence 47889999999999985 6789999999999999999 999888753 14799998765 3357889
Q ss_pred HHHHHHcCCCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEcCCCCeeEEEEEEecCC
Q 046788 92 FVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPR 154 (163)
Q Consensus 92 ~v~~W~~e~~~y~~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~~~~~~~vC~Y~p~ 154 (163)
+|+.||+|..+|+++.+.+.. +..++|||||||++|++||||++.|..+....++||+|+|+
T Consensus 77 av~~W~~e~~~y~~~~~~~~~-~~~~~hftqmvw~~t~~vGCa~~~c~~~~~~~~~vC~Y~P~ 138 (138)
T cd05383 77 VIQAWYDEYKDFKYGVGATPP-GAVVGHYTQIVWYKSYLVGCAVAYCPNSKYKYFYVCHYCPA 138 (138)
T ss_pred HHHHHHHHHHhCCCCCCCCCC-CCchhhHHHHHHHhccccceEEEECCCCCcCEEEEEecCCC
Confidence 999999999999999876554 66899999999999999999999998863234899999995
No 7
>cd05559 SCP_HrTT-1 SCP_HrTT-1: SCP-like extracellular protein domain in HrTT-1, a tail-tip epidermis marker in ascidians. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=100.00 E-value=5.6e-36 Score=207.30 Aligned_cols=123 Identities=30% Similarity=0.554 Sum_probs=107.3
Q ss_pred hHHHHHHHHHHHhhCC-----CCCcccCHHHHHHHHHHHHhhcCCCCCcCCCCC---CccceEEeccCCCCCHHHHHHHH
Q 046788 25 PEDYLKAHNEARASVG-----VGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVS---KYSETIAWSSQGEITAAEFVKMC 96 (163)
Q Consensus 25 ~~~iL~~hN~~R~~~~-----m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~~---~~Geni~~~~~~~~~~~~~v~~W 96 (163)
|+.||+.||.+|+.++ |.+|+||++||..||.||+ +|.+.|++.. .+|||++....+...+.++|+.|
T Consensus 1 r~~il~~HN~~R~~~~p~a~~m~~L~Wd~~La~~A~~~a~----~C~~~~~~~~~~~~~GeNl~~~~~~~~~~~~~v~~W 76 (136)
T cd05559 1 RLNLVDLHNQYRSQVSPPAANMLKMTWDEELAALAEAYAR----KCIWDHNPDRGHLRVGENLFISTGPPFDATKAVEDW 76 (136)
T ss_pred CcHHHHHHHHHHhhCCCccccCcccccCHHHHHHHHHHHH----hccccCCCcccCCCceeeeeecCCCCCCHHHHHHHH
Confidence 5789999999999996 7789999999999999999 9998887643 69999988765556899999999
Q ss_pred HcCCCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEcCCC-----CeeEEEEEEec
Q 046788 97 MDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNN-----GTLNFVICNYD 152 (163)
Q Consensus 97 ~~e~~~y~~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~-----~~~~~~vC~Y~ 152 (163)
++|..+|++..+.+.. +..++|||||||+++++||||++.|+++ ....++||+|+
T Consensus 77 ~~e~~~y~~~~~~~~~-~~~~~hftqmvw~~t~~vGCa~~~c~~~~~~~~~~~~~~vC~Y~ 136 (136)
T cd05559 77 NNEKLDYNYNTNTCAP-NKMCGHYTQVVWANTFKIGCGSYFCETLEVLRWENATLLVCNYG 136 (136)
T ss_pred HHHHHhcCCCCCCCCC-CCcccchHHHHHhccCccceEEEECCCCCCCCcccCEEEEecCC
Confidence 9999999998887766 6689999999999999999999999752 12348999995
No 8
>cd00168 SCP SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. This family also includes CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Roles for CRISP, in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as
Probab=100.00 E-value=3.1e-35 Score=199.88 Aligned_cols=118 Identities=31% Similarity=0.595 Sum_probs=105.0
Q ss_pred hHHHHHHHHHHHhhC-CCCCcccCHHHHHHHHHHHHhhcCCCCCcCCCCC---CccceEEeccCCCCCHHHHHHHHHcCC
Q 046788 25 PEDYLKAHNEARASV-GVGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVS---KYSETIAWSSQGEITAAEFVKMCMDGK 100 (163)
Q Consensus 25 ~~~iL~~hN~~R~~~-~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~~---~~Geni~~~~~~~~~~~~~v~~W~~e~ 100 (163)
+++||+.||.+|+++ +|+||+||++|+..||.||+ +|.+.|+... .+|||++....+ .++.++|+.|++|.
T Consensus 1 ~~~il~~hN~~R~~~a~~~~L~wd~~La~~A~~~a~----~c~~~h~~~~~~~~~geNi~~~~~~-~~~~~~v~~W~~e~ 75 (122)
T cd00168 1 AQEVVRLHNSYRAKVNGMLPMSWDAELAKTAQNYAN----RCIFKHSGEDGRGFVGENLAAGSYD-MTGPAAVQAWYNEI 75 (122)
T ss_pred CcHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHHHh----hccccCCCcccCCCCCceeEEecCC-CCHHHHHHHHHHHH
Confidence 367999999999999 99999999999999999999 8999887654 689999987643 68999999999999
Q ss_pred CCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEcCCCCeeEEEEEEec
Q 046788 101 PLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYD 152 (163)
Q Consensus 101 ~~y~~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~~~~~~~vC~Y~ 152 (163)
.+|+|..+.. +..++||+||||+++++||||++.|+.++. ++||+|+
T Consensus 76 ~~y~~~~~~~---~~~~~h~~qmvw~~s~~vGca~~~~~~~~~--~~vC~Y~ 122 (122)
T cd00168 76 KNYNFGQPGF---SSGTGHYTQVVWKNTTKIGCGVAFCGSNSY--YVVCNYG 122 (122)
T ss_pred HhCCCCCCCC---CCCccchhhhhcccCCeeeeEEEEcCCCCE--EEEEeCc
Confidence 9999985544 347999999999999999999999997666 8999995
No 9
>KOG3017 consensus Defense-related protein containing SCP domain [Function unknown]
Probab=100.00 E-value=1.2e-34 Score=216.01 Aligned_cols=137 Identities=35% Similarity=0.669 Sum_probs=117.7
Q ss_pred CchHHHHHHHHHHHhhCC-----CCCcccCHHHHHHHHHHHHhhcCCCCCcCCC-----CCCccceEEeccCCC------
Q 046788 23 NKPEDYLKAHNEARASVG-----VGPMSWDYKLADYSHKHAQKLKGNCNLKKPQ-----VSKYSETIAWSSQGE------ 86 (163)
Q Consensus 23 ~~~~~iL~~hN~~R~~~~-----m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~-----~~~~Geni~~~~~~~------ 86 (163)
+.++++++.||.+|..++ |++|+||++||..||.||+ +|.+.|+. ...+|||+++.....
T Consensus 40 ~~~~~~~~~hn~~r~~~~~~as~m~~m~Wd~~La~~Aq~~a~----~c~~~~~~~~~~~~~~~GeNl~~~~~~~~~~~~~ 115 (225)
T KOG3017|consen 40 NLRSEILNGHNVARGAVGPPASNMMKLKWDDELAALAQNWAN----TCPFGHDKCVHTSFGPYGENLAWGWSSNPPLSLD 115 (225)
T ss_pred HHHHHHHhhhHHhcCccCCchHhCccccCCHHHHHHHHHHHh----hCCcccCccccccCCCCcccceeeccCCCCcccc
Confidence 468889999999999999 9999999999999999999 88887764 446799999876531
Q ss_pred CCHHHHHHHHHcCCCCCCCCCCcccCC--CCccchHHHHHHHhcCeeeEEEEEcCCCC---eeEEEEEEecCCCCCCC-C
Q 046788 87 ITAAEFVKMCMDGKPLYDYNSNTCALN--GTKCAIYTQVVWRNSVRLGCAKERCNNNG---TLNFVICNYDPRGNVFG-Q 160 (163)
Q Consensus 87 ~~~~~~v~~W~~e~~~y~~~~~~~~~~--~~~~~~ftq~vw~~t~~vGCa~~~c~~~~---~~~~~vC~Y~p~gN~~g-~ 160 (163)
..+..+++.|+.|...|++.++.+... +..+||||||||++|++||||++.|+++. ...++||+|+|+||..+ +
T Consensus 116 ~~~~~a~~~w~~e~~~~~~~~~~~~~~~~~~~~gHyTQ~vw~~s~~vGCgv~~c~~~~~~~~~~~~vC~Y~p~g~~~~~~ 195 (225)
T KOG3017|consen 116 TSGALAVEAWESEFQEYDWSSNTCSSADFGEGIGHYTQMVWAKSTKVGCGVVRCGNGSNGYNTVAVVCNYDPPGNNINGE 195 (225)
T ss_pred ccHHHHHHHHHHHHHHccCcccccCcccCCCcceEEEEEEEeCCceeceeeccCCCCCCCcceEEEEEEeecCCCCcCCC
Confidence 567889999999999999999888642 56899999999999999999999999863 34589999999965555 6
Q ss_pred CCC
Q 046788 161 RPY 163 (163)
Q Consensus 161 ~~Y 163 (163)
.||
T Consensus 196 ~~y 198 (225)
T KOG3017|consen 196 IPY 198 (225)
T ss_pred CcC
Confidence 776
No 10
>cd05380 SCP_euk SCP_euk: SCP-like extracellular protein domain, as found mainly in eukaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=100.00 E-value=9.9e-34 Score=196.97 Aligned_cols=123 Identities=29% Similarity=0.561 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHHhhC------------CCCCcccCHHHHHHHHHHHHhhcCCCCCcCCCCC---CccceEEeccCC----
Q 046788 25 PEDYLKAHNEARASV------------GVGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVS---KYSETIAWSSQG---- 85 (163)
Q Consensus 25 ~~~iL~~hN~~R~~~------------~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~~---~~Geni~~~~~~---- 85 (163)
|+.||+.||.+|+++ .|++|+||++||..||.||+ +|...|+... .+|||++.....
T Consensus 1 ~~~il~~HN~~R~~~a~g~~~~~p~a~~m~~l~Wd~~La~~A~~~a~----~C~~~~~~~~~~~~~GeNl~~~~~~~~~~ 76 (144)
T cd05380 1 RQAILDAHNELRSKVAKGTYSLLPPASNMPKLKWDDELAALAQNWAK----TCVFEHSPCRNTGGVGQNLAAGSSTGSTV 76 (144)
T ss_pred CcHHHHHHHHHHHHhhcCCCCCCCchhcCCcceeCHHHHHHHHHHHh----cCCCcCCcccCCCCCCcEEEEeccCCCCH
Confidence 468999999999999 69999999999999999999 9988887654 699999987643
Q ss_pred CCCHHHHHHHHHcCCCCCCCCCC-cccCCCCccchHHHHHHHhcCeeeEEEEEcCCC-CeeEEEEEEec
Q 046788 86 EITAAEFVKMCMDGKPLYDYNSN-TCALNGTKCAIYTQVVWRNSVRLGCAKERCNNN-GTLNFVICNYD 152 (163)
Q Consensus 86 ~~~~~~~v~~W~~e~~~y~~~~~-~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~-~~~~~~vC~Y~ 152 (163)
...+.++|+.|++|...|++... .+.. +..++|||||||+++++||||++.|..+ ....++||+|+
T Consensus 77 ~~~~~~~v~~W~~e~~~~~~~~~~~~~~-~~~~~hftq~vw~~t~~vGCa~~~~~~~~~~~~~~vC~Y~ 144 (144)
T cd05380 77 EELAEDAVNAWYNELKDYGFGSNPTNNF-NSGIGHFTQMVWAKTTKVGCAVARCGKDGGNKTVVVCNYS 144 (144)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCccccc-ccchhHHHHHHHHhcCccceEEEEeecCCceEEEEEecCC
Confidence 23688999999999999999875 2223 5689999999999999999999999863 23348999995
No 11
>PF00188 CAP: Cysteine-rich secretory protein family; InterPro: IPR014044 The cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins (CAP) superfamily proteins are found in a wide range of organisms, including prokaryotes [] and non-vertebrate eukaryotes [], The nine subfamilies of the mammalian CAP superfamily include: the human glioma pathogenesis-related 1 (GLIPR1), Golgi associated pathogenesis related-1 (GAPR1) proteins, peptidase inhibitor 15 (PI15), peptidase inhibitor 16 (PI16), cysteine-rich secretory proteins (CRISPs), CRISP LCCL domain containing 1 (CRISPLD1), CRISP LCCL domain containing 2 (CRISPLD2), mannose receptor like and the R3H domain containing like proteins. Members are most often secreted and have an extracellular endocrine or paracrine function and are involved in processes including the regulation of extracellular matrix and branching morphogenesis, potentially as either proteases or protease inhibitors; in ion channel regulation in fertility; as tumour suppressor or pro-oncogenic genes in tissues including the prostate; and in cell-cell adhesion during fertilisation. The overall protein structural conservation within the CAP superfamily results in fundamentally similar functions for the CAP domain in all members, yet the diversity outside of this core region dramatically alters the target specificity and, thus, the biological consequences []. The Ca++-chelating function [] would fit with the various signalling processes (e.g. the CRISP proteins) that members of this family are involved in, and also the sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how Q91055 from SWISSPROT blocks the Ca++ transporting ryanodine receptors. This entry represents the CAP domain common to all members of the CAP superfamily. The CAP domain forms a unique 3 layer alpha-beta-alpha fold with some, though not all, of the structural elements found in proteases [].; PDB: 3U3N_C 3U3U_C 3U3L_C 1U53_A 1RC9_A 1SMB_A 3NT8_B 1QNX_A 1WVR_A 3Q2U_A ....
Probab=99.89 E-value=5.3e-23 Score=137.07 Aligned_cols=119 Identities=27% Similarity=0.462 Sum_probs=85.0
Q ss_pred HHHHHHHH-hhCCCCCcccCHHHHHHHHHHHHhhcCCCCCcCCCCCCccceEEeccCCCCC---HHHHHHHHHcCCCCCC
Q 046788 29 LKAHNEAR-ASVGVGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSSQGEIT---AAEFVKMCMDGKPLYD 104 (163)
Q Consensus 29 L~~hN~~R-~~~~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~~~~Geni~~~~~~~~~---~~~~v~~W~~e~~~y~ 104 (163)
|+.||.+| ...++++|+||++|+..|+.+|+ .|...+......|+++......... ....++.|+.+...++
T Consensus 1 L~~~N~~R~~~~~~~~L~~d~~L~~~A~~~a~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (124)
T PF00188_consen 1 LDLHNEYRSAANGLPPLKWDPELAKAAQAHAK----YCANSNSLSHDSGENGSQSSRFGSYSDAQVTAVENWYSESKNYN 76 (124)
T ss_dssp HHHHHHHHHBSSTBB--EE-HHHHHHHHHHHT----TTCSSEETTEESEEEEEEESSTTSHHHHHHHHHHHHHGGGGGEE
T ss_pred CHHHHHHHHHhCCCCCCeeCHHHHHHHHHhhH----HhhhhcccccccCCCCccccccccccchhhHHHHHHHhcccccc
Confidence 78999999 88889999999999999999999 6766444444678888766533221 1112999999998887
Q ss_pred CCCCc-ccCCCCccchHHHHHHHhcCeeeEEEEEcCCCCeeEEEEEEe
Q 046788 105 YNSNT-CALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNY 151 (163)
Q Consensus 105 ~~~~~-~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~~~~~~~vC~Y 151 (163)
..... .......++||+||+|.++++||||++.|+.+....++||.|
T Consensus 77 ~~~~~~~~~~~~~~~h~~~ll~~~~~~iGca~~~~~~~~~~~~~vc~y 124 (124)
T PF00188_consen 77 FQNQSIFNSWMNSPGHFTNLLWPNTTRIGCAVANCPNGKNNYYWVCNY 124 (124)
T ss_dssp TTCSTEESSTTSTCHHHHHHT-TT--EEEEEEEEETTSSSEEEEEEEE
T ss_pred cccchhhhccCCchhhhhhhhcCCCCEEEEEEEEeCCCCeeEEEEEEC
Confidence 77211 111145789999999999999999999999876223999998
No 12
>TIGR02909 spore_YkwD uncharacterized protein, YkwD family. Members of this protein family represent a subset of those belonging to Pfam family pfam00188 (SCP-like extracellular protein). Based on currently cuttoffs for this model, all member proteins are found in Bacteria capable of endospore formation. Members include a named but uncharacterized protein, YkwD of Bacillus subtilis. Only the C-terminal region is well-conserved and is included in the seed alignment for this model. Three members of this family have an N-terminal domain homologous to the spore coat assembly protein SafA.
Probab=99.85 E-value=1.2e-20 Score=129.01 Aligned_cols=107 Identities=14% Similarity=0.216 Sum_probs=91.4
Q ss_pred CchHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhcCCCCCcCCCCC----------------CccceEEeccCCC
Q 046788 23 NKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVS----------------KYSETIAWSSQGE 86 (163)
Q Consensus 23 ~~~~~iL~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~~----------------~~Geni~~~~~~~ 86 (163)
++++++|+.||.+|.+++++||+||+.|+..|+.||++|+..+.+.|..+. ..||||+.+.
T Consensus 3 ~~e~~~l~~iN~~R~~~Gl~pL~~~~~L~~~A~~hA~~ma~~~~~~H~~~~~~~~~~r~~~~g~~~~~~gENi~~g~--- 79 (127)
T TIGR02909 3 AEEKRVVELVNAERAKNGLKPLKADPELSKVARLKSEDMRDKNYFSHTSPTYGSPFDMMKKFGISYRMAGENIAYGN--- 79 (127)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHHHHhCCcccccCCCCCCHHHHHHHcCCCcccceeeeeccC---
Confidence 457889999999999999999999999999999999999999988887531 3489998654
Q ss_pred CCHHHHHHHHHcCCCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEcCCCCeeEEEEEEe
Q 046788 87 ITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNY 151 (163)
Q Consensus 87 ~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~~~~~~~vC~Y 151 (163)
.++.++|+.|++ ..+|+.+|+|.+.++||||++.+++|+. |+|=.|
T Consensus 80 ~~~~~~v~~W~~-----------------S~gH~~nil~~~~~~~Gvg~~~~~~g~~--y~~q~F 125 (127)
T TIGR02909 80 STVEAVHNAWMN-----------------SPGHRANILNPNYTEIGVGYVEGGSGGI--YWTQMF 125 (127)
T ss_pred CCHHHHHHHHHc-----------------CHhHHHHHcCCCcCeEeEEEEeCCCCCe--EEEEEe
Confidence 478899999954 3589999999999999999999888765 565444
No 13
>cd05379 SCP_bacterial SCP_bacterial: SCP-like extracellular protein domain, as found in bacteria and archaea. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Little is known about the biological roles of the bacterial and archaeal SCP domains.
Probab=99.74 E-value=3.9e-17 Score=110.01 Aligned_cols=104 Identities=21% Similarity=0.305 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhcCCCCCcCCCCCC----------------ccceEEeccCCCCCH
Q 046788 26 EDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVSK----------------YSETIAWSSQGEITA 89 (163)
Q Consensus 26 ~~iL~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~~~----------------~Geni~~~~~~~~~~ 89 (163)
+++++.+|.+|.+++++||+||.+|+..|+.+|.+|+....+.|..... +|||++... ..+
T Consensus 2 ~~~~~~iN~~R~~~gl~pl~~~~~l~~~A~~~a~~~~~~~~~~h~~~~~~~~~~~~~~~g~~~~~~~eni~~~~---~~~ 78 (122)
T cd05379 2 QEALELINAYRAQNGLPPLTWDPALAAAAQAHARDMAANGYFSHTGPDGSSPFDRARAAGYPYSSAGENIAYGY---STA 78 (122)
T ss_pred hHHHHHHHHHHHHcCCCCCccChHHHHHHHHHHHHHHhcCccCCcCCCCCCHHHHHHHcCCCcCccchhhcccC---CCH
Confidence 5789999999999999999999999999999999999777777765322 389987665 278
Q ss_pred HHHHHHHHcCCCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEcCCCCeeEEEEEEe
Q 046788 90 AEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNY 151 (163)
Q Consensus 90 ~~~v~~W~~e~~~y~~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~~~~~~~vC~Y 151 (163)
.++++.|++ ..+|+.+|+|...+++|||++.+.++.. ++|..|
T Consensus 79 ~~~~~~w~~-----------------~~~H~~~ll~~~~~~~Gvg~~~~~~~~~--y~~~~f 121 (122)
T cd05379 79 EAAVDGWMN-----------------SPGHRANILNPDYTEVGVGVAYGGDGGY--YWVQVF 121 (122)
T ss_pred HHHHHHHhC-----------------CHhHHHHHcCCCcceeeEEEEeCCCCCe--EEEEec
Confidence 999999953 3579999999999999999999887665 666655
No 14
>COG2340 Uncharacterized protein with SCP/PR1 domains [Function unknown]
Probab=99.34 E-value=6.2e-12 Score=92.72 Aligned_cols=100 Identities=17% Similarity=0.220 Sum_probs=84.0
Q ss_pred CCCchHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhcCCCCCcCCCCC----------------CccceEEeccC
Q 046788 21 AHNKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVS----------------KYSETIAWSSQ 84 (163)
Q Consensus 21 ~~~~~~~iL~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~~----------------~~Geni~~~~~ 84 (163)
.++..+.+++.+|.+|.++++++|+||.+|+..|+.+++.|+.+..+.|..+. .+||||+.+..
T Consensus 77 ~~~~~~~~~~~~N~~R~~~~l~~L~~n~~L~~~A~~~a~~m~~~g~~sH~~~~g~~~~~r~~~~g~~~~~agENIa~g~~ 156 (207)
T COG2340 77 LAQFEKAVVAETNQERAKHGLPPLAWNATLAKAARNHARDMAKNGYFSHTSPTGETPADRLKKYGISGATAGENIAYGSN 156 (207)
T ss_pred cchhHHHHHHHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHcCCccccCCCCCCHHHHHHhCCcccccccceeecCCC
Confidence 34677889999999999999999999999999999999999998889997531 37999988762
Q ss_pred CCCCHHHHHHHHHcCCCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEcC
Q 046788 85 GEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCN 139 (163)
Q Consensus 85 ~~~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~ 139 (163)
. .+..+|+.| -...||-.+|+-..-+.+|.|+..-.
T Consensus 157 ~--~~~~~v~~W-----------------l~S~gH~~nll~~~~~~~Gv~~~~~~ 192 (207)
T COG2340 157 D--PPEAAVDGW-----------------LNSPGHRKNLLNPAYTEIGVGVAYDA 192 (207)
T ss_pred C--chHHHHHHh-----------------cCChhhhhhccCcchhheeEEEEecC
Confidence 2 227999999 33568889999999999999998744
No 15
>PF11054 Surface_antigen: Sporozoite TA4 surface antigen; InterPro: IPR021288 This family of proteins is a Eukaryotic family of surface antigens. One of the better characterised members of the family is the sporulated TA4 antigen. The TA4 gene encodes a single polypeptide of 25 kDa which contains a 17 and a 8kDa polypeptide [].
Probab=89.18 E-value=2.7 Score=31.70 Aligned_cols=133 Identities=17% Similarity=0.192 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHHhhCCCCCcc-----------c-CHHHHHHHHHHHHhhcCCCCCcCC-CCC-----------CccceEE
Q 046788 25 PEDYLKAHNEARASVGVGPMS-----------W-DYKLADYSHKHAQKLKGNCNLKKP-QVS-----------KYSETIA 80 (163)
Q Consensus 25 ~~~iL~~hN~~R~~~~m~~L~-----------W-d~~La~~Aq~~a~~~~~~C~~~~~-~~~-----------~~Geni~ 80 (163)
.-++|+..|..|...|++... . +++| .....|.. -|..... ..+ .-| +.+
T Consensus 35 ~~~CL~E~NaaReAAGL~~F~~A~~~~~~Lp~~~~~e~-~~~t~W~~----iC~~l~pt~~~~~~~~~~~~pf~~G-TyA 108 (254)
T PF11054_consen 35 SVECLSEMNAAREAAGLANFTEATSDDQKLPEPGSEEL-TDDTLWKK----ICEHLIPTQAEPAAEASKLNPFKDG-TYA 108 (254)
T ss_pred chhHHHHHHHHHHhcCchhhHhhcCCcccCCCCCchhc-cchhhHHH----HHHHhcCCCCcchhhccccCcCCCC-ceE
Confidence 557999999999999954221 2 2333 44556666 5643222 111 112 222
Q ss_pred e--ccCCCCCHHHHHHHHHcCCCCCCCCCCcccCC-----CCccchHHHHHHHhcCe-eeEEEEEcCCC-----------
Q 046788 81 W--SSQGEITAAEFVKMCMDGKPLYDYNSNTCALN-----GTKCAIYTQVVWRNSVR-LGCAKERCNNN----------- 141 (163)
Q Consensus 81 ~--~~~~~~~~~~~v~~W~~e~~~y~~~~~~~~~~-----~~~~~~ftq~vw~~t~~-vGCa~~~c~~~----------- 141 (163)
. ......+..++|+.|-.-.++++--.+..... +...-.|.-|-..++.- .-|.+..|+..
T Consensus 109 f~~lt~~~~dCk~aVdYWKaafknF~glPPs~~~~~~lYndqdnVSFVALYNPs~~atAdC~vvTCt~tt~~~~~~~~~~ 188 (254)
T PF11054_consen 109 FKSLTDEKPDCKEAVDYWKAAFKNFTGLPPSKTAANKLYNDQDNVSFVALYNPSSSATADCRVVTCTQTTSNTAGGSRLQ 188 (254)
T ss_pred eeeccCCCCChHHHHHHHHHHHhhcCCCCCChhhccccccCCcceeEEEEeCCCCCCcceeEEEeCCCCCccCCCccccc
Confidence 2 12345689999999987777765422222210 22234455555555554 56999999641
Q ss_pred -------CeeEEEEEEecCCCC-CCCCCCC
Q 046788 142 -------GTLNFVICNYDPRGN-VFGQRPY 163 (163)
Q Consensus 142 -------~~~~~~vC~Y~p~gN-~~g~~~Y 163 (163)
++.+-++|.=.|..- ..|..||
T Consensus 189 ~d~~~~~~~gyAliCkT~P~Al~~~~saPF 218 (254)
T PF11054_consen 189 GDSDSESKTGYALICKTMPAALASDGSAPF 218 (254)
T ss_pred CCCcccccceEEEEEecCchhhcCCCCCCC
Confidence 224579999999765 5677665
No 16
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=82.50 E-value=1.1 Score=28.82 Aligned_cols=12 Identities=25% Similarity=0.207 Sum_probs=6.5
Q ss_pred CcchhHHHHHHH
Q 046788 1 MPSTSAIFCLLA 12 (163)
Q Consensus 1 m~~~~~~~~ll~ 12 (163)
|.|..+|||.|+
T Consensus 1 MaSK~~llL~l~ 12 (95)
T PF07172_consen 1 MASKAFLLLGLL 12 (95)
T ss_pred CchhHHHHHHHH
Confidence 667555544444
No 17
>PF15240 Pro-rich: Proline-rich
Probab=81.69 E-value=0.65 Score=33.38 Aligned_cols=21 Identities=38% Similarity=0.540 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhhhccCCCchH
Q 046788 6 AIFCLLALATIHLSSAHNKPE 26 (163)
Q Consensus 6 ~~~~ll~~~~~~~~~~~~~~~ 26 (163)
|||+||+++|++.++|+...+
T Consensus 1 MLlVLLSvALLALSSAQ~~dE 21 (179)
T PF15240_consen 1 MLLVLLSVALLALSSAQSTDE 21 (179)
T ss_pred ChhHHHHHHHHHhhhcccccc
Confidence 356666666666666665443
No 18
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=79.68 E-value=3.8 Score=27.76 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=16.6
Q ss_pred HHHHHHHHHhhCCCCCcccCHHHH
Q 046788 28 YLKAHNEARASVGVGPMSWDYKLA 51 (163)
Q Consensus 28 iL~~hN~~R~~~~m~~L~Wd~~La 51 (163)
+.-.||+.|++-|+.++.-..-++
T Consensus 18 ~~~~~~rRR~r~G~~P~~gt~w~~ 41 (130)
T PF12273_consen 18 LFYCHNRRRRRRGLQPIYGTRWMA 41 (130)
T ss_pred HHHHHHHHHhhcCCCCcCCceecC
Confidence 345689999998988776443333
No 19
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=68.99 E-value=3.2 Score=18.10 Aligned_cols=13 Identities=31% Similarity=0.347 Sum_probs=6.0
Q ss_pred CcchhHHHHHHHH
Q 046788 1 MPSTSAIFCLLAL 13 (163)
Q Consensus 1 m~~~~~~~~ll~~ 13 (163)
|+++..++++|++
T Consensus 1 MMk~vIIlvvLLl 13 (19)
T PF13956_consen 1 MMKLVIILVVLLL 13 (19)
T ss_pred CceehHHHHHHHh
Confidence 5555444444433
No 20
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=55.18 E-value=5.6 Score=31.07 Aligned_cols=34 Identities=21% Similarity=0.411 Sum_probs=21.2
Q ss_pred HHHHHhcCeeeEEEEEcCCCCeeEEEEEEecCCCCCC
Q 046788 122 QVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVF 158 (163)
Q Consensus 122 q~vw~~t~~vGCa~~~c~~~~~~~~~vC~Y~p~gN~~ 158 (163)
-+||+.-|.-=-....-+..+ ++.|.|+|.||..
T Consensus 79 lIvWDs~TtnK~haipl~s~W---VMtCA~sPSg~~V 112 (343)
T KOG0286|consen 79 LIVWDSFTTNKVHAIPLPSSW---VMTCAYSPSGNFV 112 (343)
T ss_pred EEEEEcccccceeEEecCcee---EEEEEECCCCCeE
Confidence 467776665443333333323 7899999999864
No 21
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=54.23 E-value=24 Score=25.13 Aligned_cols=38 Identities=8% Similarity=0.147 Sum_probs=18.4
Q ss_pred CcchhHHHHHHHHHHhhhccCCCchHHHHHHHHHHHhh
Q 046788 1 MPSTSAIFCLLALATIHLSSAHNKPEDYLKAHNEARAS 38 (163)
Q Consensus 1 m~~~~~~~~ll~~~~~~~~~~~~~~~~iL~~hN~~R~~ 38 (163)
|++.+.++++++.+++....+..++...++..-.+|+.
T Consensus 1 ~mRvl~i~Lliis~fl~a~~s~~ek~s~~~~~~d~ksi 38 (182)
T COG2143 1 VMRVLLIVLLIISLFLSACKSNNEKRSNIDVFDDNKSI 38 (182)
T ss_pred CcchHHHHHHHHHHHHHHHhCCchhhhhhhhHHHHHhc
Confidence 44445554444444443334444555555555555554
No 22
>COG3026 RseB Negative regulator of sigma E activity [Signal transduction mechanisms]
Probab=53.76 E-value=24 Score=27.60 Aligned_cols=37 Identities=27% Similarity=0.262 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHhhhccCCCchHHHHHHHHHHHhhCC
Q 046788 4 TSAIFCLLALATIHLSSAHNKPEDYLKAHNEARASVG 40 (163)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~~~~~~iL~~hN~~R~~~~ 40 (163)
++++++++.+++++.+.+++...++|...|+.+.+..
T Consensus 6 ~s~~ll~~sl~~s~~a~ae~~s~~~L~km~~A~~~ln 42 (320)
T COG3026 6 FSLLLLLGSLLLSAAASAESASAAWLQKMNEASQSLN 42 (320)
T ss_pred HHHHHHHHHHhhhhhhhccCccHHHHHHHHHHHHhcC
Confidence 4555666666666666666666699999999998876
No 23
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=50.17 E-value=40 Score=19.39 Aligned_cols=10 Identities=0% Similarity=0.092 Sum_probs=3.9
Q ss_pred HHHHHHHHHh
Q 046788 28 YLKAHNEARA 37 (163)
Q Consensus 28 iL~~hN~~R~ 37 (163)
+-.....++.
T Consensus 46 ~~~~~~s~~~ 55 (58)
T PF13677_consen 46 FEEVAQSFQQ 55 (58)
T ss_pred HHHHHHHHHH
Confidence 3333344443
No 24
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=49.64 E-value=13 Score=17.74 Aligned_cols=13 Identities=8% Similarity=-0.161 Sum_probs=4.8
Q ss_pred hhHHHHHHHHHHh
Q 046788 4 TSAIFCLLALATI 16 (163)
Q Consensus 4 ~~~~~~ll~~~~~ 16 (163)
.++++++.++.++
T Consensus 9 kil~~l~a~~~La 21 (25)
T PF08139_consen 9 KILFPLLALFMLA 21 (25)
T ss_pred HHHHHHHHHHHHh
Confidence 3333333333333
No 25
>TIGR03044 PS_II_psb27 photosystem II protein Psb27. Members of this family are the Psb27 protein of the cyanobacterial photosynthetic supracomplex, photosystem II. Although most protein components of both cyanobacterial and chloroplast versions of photosystem II are closely related and described together by single model families, this family is strictly bacterial. Some uncharacterized proteins with highly divergent sequences, from Arabidopsis, score between trusted and noise cutoffs for this model but are not at this time assigned as functionally equivalent photosystem II proteins.
Probab=46.25 E-value=39 Score=23.20 Aligned_cols=25 Identities=16% Similarity=0.120 Sum_probs=20.5
Q ss_pred CchHHHHHHHHHHHhhCCCCCcccC
Q 046788 23 NKPEDYLKAHNEARASVGVGPMSWD 47 (163)
Q Consensus 23 ~~~~~iL~~hN~~R~~~~m~~L~Wd 47 (163)
+..++-+...+.+|....++.=.-+
T Consensus 36 ~Y~~DT~~Vi~tlr~~i~lpkd~p~ 60 (135)
T TIGR03044 36 DYVEDTLAVIQTLREAIDLPDDDPN 60 (135)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 5789999999999999998654433
No 26
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=39.79 E-value=30 Score=30.63 Aligned_cols=41 Identities=7% Similarity=0.260 Sum_probs=33.2
Q ss_pred CCchHHHHHHHHHHHhhCC----------------------CCCcccCHHHHHHHHHHHHhhc
Q 046788 22 HNKPEDYLKAHNEARASVG----------------------VGPMSWDYKLADYSHKHAQKLK 62 (163)
Q Consensus 22 ~~~~~~iL~~hN~~R~~~~----------------------m~~L~Wd~~La~~Aq~~a~~~~ 62 (163)
-.+|+++++.+|.-+.... |-.|-|++.|++.|+...-+|.
T Consensus 782 vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~G 844 (901)
T KOG4439|consen 782 VKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMG 844 (901)
T ss_pred hhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhc
Confidence 3579999999999887432 5578899999999999887554
No 27
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=37.59 E-value=16 Score=19.97 Aligned_cols=11 Identities=27% Similarity=0.087 Sum_probs=4.1
Q ss_pred CcchhHHHHHH
Q 046788 1 MPSTSAIFCLL 11 (163)
Q Consensus 1 m~~~~~~~~ll 11 (163)
|.+++.+++++
T Consensus 1 MkKi~~~~i~~ 11 (46)
T PF02402_consen 1 MKKIIFIGIFL 11 (46)
T ss_pred CcEEEEeHHHH
Confidence 44433333333
No 28
>PRK09810 entericidin A; Provisional
Probab=37.43 E-value=37 Score=18.26 Aligned_cols=11 Identities=27% Similarity=0.365 Sum_probs=4.1
Q ss_pred CcchhHHHHHH
Q 046788 1 MPSTSAIFCLL 11 (163)
Q Consensus 1 m~~~~~~~~ll 11 (163)
|++.+++++++
T Consensus 1 mMkk~~~l~~~ 11 (41)
T PRK09810 1 MMKRLIVLVLL 11 (41)
T ss_pred ChHHHHHHHHH
Confidence 34433333333
No 29
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=36.99 E-value=36 Score=19.88 Aligned_cols=15 Identities=33% Similarity=0.445 Sum_probs=6.8
Q ss_pred CcchhHHHHHHHHHH
Q 046788 1 MPSTSAIFCLLALAT 15 (163)
Q Consensus 1 m~~~~~~~~ll~~~~ 15 (163)
|.+.+.+|.||++++
T Consensus 1 MA~Kl~vialLC~aL 15 (65)
T PF10731_consen 1 MASKLIVIALLCVAL 15 (65)
T ss_pred CcchhhHHHHHHHHH
Confidence 555444444444333
No 30
>PF04648 MF_alpha: Yeast mating factor alpha hormone; InterPro: IPR006742 This repeated sequence,WHWLQLKPGQPMY, characterises the mating factor alpha-1 or alpha-1 mating pheromone [contains: Mating factor alpha].The hormone is excreted into the culture medium by haploid cells of the alpha mating type and acts on cells of the opposite mating type (type A) by binding to a cognate G-protein coupled receptor which is coupled to a downstream signal transduction pathway. It inhibits DNA synthesis in type A cells synchronising them with type alpha, and so mediates the conjugation process.; GO: 0000772 mating pheromone activity, 0019953 sexual reproduction, 0005576 extracellular region
Probab=32.84 E-value=25 Score=13.94 Aligned_cols=6 Identities=50% Similarity=0.556 Sum_probs=3.5
Q ss_pred CCCCCC
Q 046788 158 FGQRPY 163 (163)
Q Consensus 158 ~g~~~Y 163 (163)
.||++|
T Consensus 8 ~GqP~Y 13 (13)
T PF04648_consen 8 PGQPMY 13 (13)
T ss_pred CCCcCC
Confidence 366665
No 31
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=31.18 E-value=73 Score=18.91 Aligned_cols=33 Identities=21% Similarity=0.071 Sum_probs=14.9
Q ss_pred chhHHHHHHHHHHhhhccCCC-chHHHHHHHHHH
Q 046788 3 STSAIFCLLALATIHLSSAHN-KPEDYLKAHNEA 35 (163)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~~-~~~~iL~~hN~~ 35 (163)
..+.++|.++++++-+..+.. ..-+-|...|.+
T Consensus 3 IiiSIvLai~lLI~l~~ns~lr~eiealkY~N~y 36 (66)
T PF07438_consen 3 IIISIVLAIALLISLSVNSELRKEIEALKYMNDY 36 (66)
T ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 344555555555443333321 122346666654
No 32
>PF13780 DUF4176: Domain of unknown function (DUF4176)
Probab=31.07 E-value=1e+02 Score=18.80 Aligned_cols=20 Identities=25% Similarity=0.562 Sum_probs=14.0
Q ss_pred CeeEEEEEEecCCCCCCCCCC
Q 046788 142 GTLNFVICNYDPRGNVFGQRP 162 (163)
Q Consensus 142 ~~~~~~vC~Y~p~gN~~g~~~ 162 (163)
.+..|+.|.| |.|+...+.+
T Consensus 32 ~~~DY~g~~y-P~G~~~~~~~ 51 (76)
T PF13780_consen 32 KYFDYVGCPY-PEGLIGPEET 51 (76)
T ss_pred EEEeeeEEeC-CCccCCCCce
Confidence 4555777776 9999876654
No 33
>PF03295 Pox_TAA1: Poxvirus trans-activator protein A1 C-terminal; InterPro: IPR004975 Late transcription factor VLTF-2, acts with RNA polymerase to initiate transcription from late gene promoters [].
Probab=29.65 E-value=61 Score=18.98 Aligned_cols=19 Identities=37% Similarity=0.590 Sum_probs=16.1
Q ss_pred CchHHHHHHHHHHHhhCCC
Q 046788 23 NKPEDYLKAHNEARASVGV 41 (163)
Q Consensus 23 ~~~~~iL~~hN~~R~~~~m 41 (163)
+..+++++.+|.+|++-|.
T Consensus 24 ~~Pe~Vi~iIN~lR~keGv 42 (63)
T PF03295_consen 24 EDPEEVINIINELRNKEGV 42 (63)
T ss_pred cCHHHHHHHHHHhhhccCc
Confidence 4678899999999999874
No 34
>PRK04561 tatA twin arginine translocase protein A; Provisional
Probab=28.57 E-value=1.4e+02 Score=18.32 Aligned_cols=36 Identities=11% Similarity=0.081 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHhhhccCCCchHHHHHHHHHHHhhCC
Q 046788 5 SAIFCLLALATIHLSSAHNKPEDYLKAHNEARASVG 40 (163)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~~~~~~iL~~hN~~R~~~~ 40 (163)
++++++++++++.+.--.+.-+.+=.....+|....
T Consensus 9 llIIlvIvlLlFG~~KLPel~r~lGk~ik~FKk~~~ 44 (75)
T PRK04561 9 WLVVLVIVLLVFGTKRLTSGAKDLGSAVKEFKKGMH 44 (75)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhc
Confidence 344555555566655555566666667777776443
No 35
>PRK14859 tatA twin arginine translocase protein A; Provisional
Probab=27.70 E-value=82 Score=18.60 Aligned_cols=34 Identities=6% Similarity=0.035 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhhhccCCCchHHHHHHHHHHHhhC
Q 046788 6 AIFCLLALATIHLSSAHNKPEDYLKAHNEARASV 39 (163)
Q Consensus 6 ~~~~ll~~~~~~~~~~~~~~~~iL~~hN~~R~~~ 39 (163)
++|++++++++.+.--.+.-..+=.....+|...
T Consensus 10 liIlvv~LlvfGp~kLP~l~r~lGk~i~~frk~~ 43 (63)
T PRK14859 10 IVILVIVLIVFGAGKLPEIGGGLGKSIKNFKKAT 43 (63)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHh
Confidence 3344444445544433345555666677777654
No 36
>PF04863 EGF_alliinase: Alliinase EGF-like domain; InterPro: IPR006947 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A.
Probab=26.35 E-value=73 Score=18.30 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=14.0
Q ss_pred cccCHHHHHHHHHHHH
Q 046788 44 MSWDYKLADYSHKHAQ 59 (163)
Q Consensus 44 L~Wd~~La~~Aq~~a~ 59 (163)
|+|...-++.|+..|.
T Consensus 1 l~Wt~~Aa~eAeavAa 16 (56)
T PF04863_consen 1 LSWTLRAAEEAEAVAA 16 (56)
T ss_dssp -STTHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHhhc
Confidence 6899999999999987
No 37
>PRK14858 tatA twin arginine translocase protein A; Provisional
Probab=26.31 E-value=67 Score=21.23 Aligned_cols=33 Identities=12% Similarity=0.140 Sum_probs=13.5
Q ss_pred HHHHHHHHHhhhccCCCchHHHHHHHHHHHhhC
Q 046788 7 IFCLLALATIHLSSAHNKPEDYLKAHNEARASV 39 (163)
Q Consensus 7 ~~~ll~~~~~~~~~~~~~~~~iL~~hN~~R~~~ 39 (163)
+|++++++++.+.--.+....+=...+.+|+..
T Consensus 11 iIlvVallvfGPkKLPelar~lGk~i~~fk~~~ 43 (108)
T PRK14858 11 VILVIALIVIGPQKLPDLARSLGRGLAEFKKAT 43 (108)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 333334444433222233344444455555443
No 38
>PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=26.12 E-value=1e+02 Score=18.85 Aligned_cols=34 Identities=12% Similarity=0.067 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhhhccCCCchHHHHHHHHHHHhhC
Q 046788 6 AIFCLLALATIHLSSAHNKPEDYLKAHNEARASV 39 (163)
Q Consensus 6 ~~~~ll~~~~~~~~~~~~~~~~iL~~hN~~R~~~ 39 (163)
+++++++++++.+.--.+--+.+=.....+|...
T Consensus 10 liIl~IvlllFG~kKLPelgr~lGkair~FK~~~ 43 (73)
T PRK02958 10 LIVLVIVVLVFGTKKLRNIGSDLGGAVKGFKDGM 43 (73)
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHh
Confidence 4455555556655544556666777778888643
No 39
>PRK00720 tatA twin arginine translocase protein A; Provisional
Probab=26.06 E-value=99 Score=19.15 Aligned_cols=35 Identities=11% Similarity=-0.000 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHhhhccCCCchHHHHHHHHHHHhhC
Q 046788 5 SAIFCLLALATIHLSSAHNKPEDYLKAHNEARASV 39 (163)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~~~~~~iL~~hN~~R~~~ 39 (163)
++++++++++++.+.--.+.-..+-.....+|...
T Consensus 9 llIIlvIvlllFG~kKLP~l~~~lGk~ik~FKk~~ 43 (78)
T PRK00720 9 WLIVLAVVLLLFGRGKISELMGDVAKGIKSFKKGM 43 (78)
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhh
Confidence 34455555556654444455667777788888543
No 40
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=26.05 E-value=81 Score=29.25 Aligned_cols=36 Identities=31% Similarity=0.529 Sum_probs=24.9
Q ss_pred ccchHHHHHHHhcCeeeEEEEEcCCCCeeEEEEEE-ecCC
Q 046788 116 KCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICN-YDPR 154 (163)
Q Consensus 116 ~~~~ftq~vw~~t~~vGCa~~~c~~~~~~~~~vC~-Y~p~ 154 (163)
.|+.|-||||.....|=.-...-..|+ .+-|+ |+|.
T Consensus 950 T~~DFWQMVWEQ~~~lIvMlT~e~Egg---R~KchqYWPr 986 (1144)
T KOG0792|consen 950 TCTDFWQMVWEQGSTLIVMLTTEVEGG---RVKCHQYWPR 986 (1144)
T ss_pred hHHHHHHHHHhcCceEEEEEeehhhcC---eeccccccCC
Confidence 689999999999777765555444444 35555 6664
No 41
>PRK00575 tatA twin arginine translocase protein A; Provisional
Probab=25.93 E-value=87 Score=20.05 Aligned_cols=34 Identities=12% Similarity=0.129 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhhhccCCCchHHHHHHHHHHHhhC
Q 046788 6 AIFCLLALATIHLSSAHNKPEDYLKAHNEARASV 39 (163)
Q Consensus 6 ~~~~ll~~~~~~~~~~~~~~~~iL~~hN~~R~~~ 39 (163)
++|++++++++...---+.-+.+=...+.+|+..
T Consensus 10 liIlvi~LllFGpkKLPel~r~lGk~ir~fK~a~ 43 (92)
T PRK00575 10 AILAVVVILLFGAKKLPDAARSLGKSLRIFKSEV 43 (92)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555554444456666777778888754
No 42
>PRK00191 tatA twin arginine translocase protein A; Provisional
Probab=25.83 E-value=92 Score=19.58 Aligned_cols=35 Identities=11% Similarity=0.122 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhhhccCCCchHHHHHHHHHHHhhCC
Q 046788 6 AIFCLLALATIHLSSAHNKPEDYLKAHNEARASVG 40 (163)
Q Consensus 6 ~~~~ll~~~~~~~~~~~~~~~~iL~~hN~~R~~~~ 40 (163)
++|++++++++.+.--.+.-+.+-.....+|+...
T Consensus 9 liI~vI~lllFGp~KLP~~~r~lGk~ir~FK~~~~ 43 (84)
T PRK00191 9 GIIVLLIIVLFGAKKLPDAARSIGRSMRIFKSEVK 43 (84)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555556555445566677777788887543
No 43
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=25.66 E-value=1.1e+02 Score=16.00 Aligned_cols=6 Identities=33% Similarity=0.196 Sum_probs=2.6
Q ss_pred CcchhH
Q 046788 1 MPSTSA 6 (163)
Q Consensus 1 m~~~~~ 6 (163)
|..+++
T Consensus 1 Mk~l~~ 6 (36)
T PF08194_consen 1 MKCLSL 6 (36)
T ss_pred CceeHH
Confidence 444443
No 44
>PRK00442 tatA twin arginine translocase protein A; Provisional
Probab=25.35 E-value=98 Score=19.81 Aligned_cols=34 Identities=9% Similarity=0.084 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhhhccCCCchHHHHHHHHHHHhhC
Q 046788 6 AIFCLLALATIHLSSAHNKPEDYLKAHNEARASV 39 (163)
Q Consensus 6 ~~~~ll~~~~~~~~~~~~~~~~iL~~hN~~R~~~ 39 (163)
++|++++++++...--.+.-+.+=.....+|...
T Consensus 10 liIlvIvlllFG~~KLPelg~~lGk~ik~FKka~ 43 (92)
T PRK00442 10 IVILVVVVLVFGTKKLKNLGSDVGESIKGFRKAM 43 (92)
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHh
Confidence 4455555556655544556666777777887643
No 45
>PRK01833 tatA twin arginine translocase protein A; Provisional
Probab=23.97 E-value=1.2e+02 Score=18.52 Aligned_cols=35 Identities=6% Similarity=0.024 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhhhccCCCchHHHHHHHHHHHhhCC
Q 046788 6 AIFCLLALATIHLSSAHNKPEDYLKAHNEARASVG 40 (163)
Q Consensus 6 ~~~~ll~~~~~~~~~~~~~~~~iL~~hN~~R~~~~ 40 (163)
+++++++++++.+.--.+.-+.+=.....+|....
T Consensus 10 liIl~i~lllFG~kKLP~l~~~lGk~ik~Fkk~~~ 44 (74)
T PRK01833 10 LIIVAIIVLLFGTKKLRTLGTDLGESVKGFKKAMA 44 (74)
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHhc
Confidence 44555555566555445566667777788887554
No 46
>PRK10598 lipoprotein; Provisional
Probab=23.57 E-value=1.3e+02 Score=21.91 Aligned_cols=20 Identities=25% Similarity=0.511 Sum_probs=16.2
Q ss_pred CchHHHHHHHHHHHhhCCCC
Q 046788 23 NKPEDYLKAHNEARASVGVG 42 (163)
Q Consensus 23 ~~~~~iL~~hN~~R~~~~m~ 42 (163)
.+.++.|..|+.+=.+.|.+
T Consensus 30 ~Ein~yL~k~~~~~k~~G~~ 49 (186)
T PRK10598 30 QEINQYLAKHNNFEKQIGLP 49 (186)
T ss_pred HHHHHHHHHhccHHHhcCCC
Confidence 46777899999999999844
No 47
>COG1318 Predicted transcriptional regulators [Transcription]
Probab=23.37 E-value=71 Score=23.03 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=17.1
Q ss_pred CCCcccCHHHHHHHHHHHH
Q 046788 41 VGPMSWDYKLADYSHKHAQ 59 (163)
Q Consensus 41 m~~L~Wd~~La~~Aq~~a~ 59 (163)
..+|+|.+.||..|-..|+
T Consensus 39 ~~~lTWvdSLavAAga~ar 57 (182)
T COG1318 39 YERLTWVDSLAVAAGALAR 57 (182)
T ss_pred ccccchhhHHHHHHHHHHH
Confidence 5689999999999998887
No 48
>PF08557 Lipid_DES: Sphingolipid Delta4-desaturase (DES); InterPro: IPR013866 Sphingolipids are important membrane signalling molecules involved in many different cellular functions in eukaryotes. Sphingolipid delta 4-desaturase catalyses the formation of (E)-sphing-4-enine []. Some proteins in this entry have bifunctional delta 4-desaturase/C-4-hydroxylase activity. Delta 4-desaturated sphingolipids may play a role in early signalling required for entry into meiotic and spermatid differentiation pathways during Drosophila spermatogenesis []. This small protein associates with FA_desaturase IPR005804 from INTERPRO and appears to be specific to sphingolipid delta 4-desaturase. ; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=23.34 E-value=87 Score=16.63 Aligned_cols=21 Identities=29% Similarity=0.585 Sum_probs=17.5
Q ss_pred chHHHHHHHHHHHhhCCCCCc
Q 046788 24 KPEDYLKAHNEARASVGVGPM 44 (163)
Q Consensus 24 ~~~~iL~~hN~~R~~~~m~~L 44 (163)
.|++||..|=+++...|-.|+
T Consensus 18 RRk~IL~k~PeIk~L~G~dp~ 38 (39)
T PF08557_consen 18 RRKEILKKHPEIKKLMGPDPL 38 (39)
T ss_pred HHHHHHHhChHHHHHhCCCCC
Confidence 588899999999998886554
No 49
>PF13605 DUF4141: Domain of unknown function (DUF4141)
Probab=23.12 E-value=1.1e+02 Score=17.54 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=14.8
Q ss_pred HHHHHHHHHhhhccCC-------CchHHHHHHHHHH
Q 046788 7 IFCLLALATIHLSSAH-------NKPEDYLKAHNEA 35 (163)
Q Consensus 7 ~~~ll~~~~~~~~~~~-------~~~~~iL~~hN~~ 35 (163)
++++.++++.+...+| +..+.|++.-+++
T Consensus 6 ~~~~~~~~~~~~a~AQWvV~DP~NlAQ~Iinaa~ei 41 (55)
T PF13605_consen 6 MLCVACLLLAGPARAQWVVTDPGNLAQNIINAAKEI 41 (55)
T ss_pred HHHHHHHhcCCcceeEEEEeCchHHHHHHHHHHHHH
Confidence 3333333555556555 3456666555443
No 50
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=23.11 E-value=86 Score=29.12 Aligned_cols=37 Identities=11% Similarity=0.129 Sum_probs=29.2
Q ss_pred ccchHHHHHHHhcCeeeEEEEEcCCCCeeEEEEEEecCC
Q 046788 116 KCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPR 154 (163)
Q Consensus 116 ~~~~ftq~vw~~t~~vGCa~~~c~~~~~~~~~vC~Y~p~ 154 (163)
..+.|-.|||..-+..=..+.++.+.+. .-.+.|+|.
T Consensus 620 Tv~DFWRMVWEq~S~~IVMvTnl~E~~r--~kC~qYWP~ 656 (1087)
T KOG4228|consen 620 TVGDFWRMVWEQKSAGIVMVTNLEEFSR--VKCAQYWPE 656 (1087)
T ss_pred chHHHHHHheeccCCcEEEEeccccccc--ccccccCCC
Confidence 5789999999999988888888776554 456679983
No 51
>PF11903 DUF3423: Protein of unknown function (DUF3423); InterPro: IPR021831 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 73 to 118 amino acids in length.
Probab=23.02 E-value=1.3e+02 Score=18.29 Aligned_cols=20 Identities=20% Similarity=0.282 Sum_probs=17.6
Q ss_pred CCCcccCHHHHHHHHHHHHh
Q 046788 41 VGPMSWDYKLADYSHKHAQK 60 (163)
Q Consensus 41 m~~L~Wd~~La~~Aq~~a~~ 60 (163)
|.+++-|++|-+.|+.++..
T Consensus 1 ~~~vri~~~L~~~ar~~a~~ 20 (72)
T PF11903_consen 1 MGSVRISDELHDQARAEAAA 20 (72)
T ss_pred CCCeeeCHHHHHHHHHHHHH
Confidence 67889999999999999984
No 52
>PRK14860 tatA twin arginine translocase protein A; Provisional
Probab=22.89 E-value=1.1e+02 Score=18.20 Aligned_cols=33 Identities=9% Similarity=0.046 Sum_probs=16.5
Q ss_pred HHHHHHHHHhhhccCCCchHHHHHHHHHHHhhC
Q 046788 7 IFCLLALATIHLSSAHNKPEDYLKAHNEARASV 39 (163)
Q Consensus 7 ~~~ll~~~~~~~~~~~~~~~~iL~~hN~~R~~~ 39 (163)
+|++++++++.+.--.+.-+.+=.....+|+..
T Consensus 11 iI~vIalllfGp~kLP~l~r~lGk~ir~fkk~~ 43 (64)
T PRK14860 11 VILVIALVVFGPAKLPQLGQALGGAIRNFKKAS 43 (64)
T ss_pred HHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHc
Confidence 344444444443333344555666666666543
No 53
>PRK10318 hypothetical protein; Provisional
Probab=22.78 E-value=2.2e+02 Score=19.26 Aligned_cols=7 Identities=0% Similarity=-0.012 Sum_probs=2.5
Q ss_pred ccCCCch
Q 046788 19 SSAHNKP 25 (163)
Q Consensus 19 ~~~~~~~ 25 (163)
+.+..+.
T Consensus 19 ~~~~~~~ 25 (121)
T PRK10318 19 KLTAHEE 25 (121)
T ss_pred ccCChhH
Confidence 3333333
No 54
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=22.54 E-value=55 Score=18.06 Aligned_cols=12 Identities=8% Similarity=0.080 Sum_probs=5.0
Q ss_pred hhHHHHHHHHHH
Q 046788 4 TSAIFCLLALAT 15 (163)
Q Consensus 4 ~~~~~~ll~~~~ 15 (163)
.+++|++++.++
T Consensus 5 KsllLlfflG~I 16 (46)
T PF03032_consen 5 KSLLLLFFLGTI 16 (46)
T ss_pred HHHHHHHHHHHc
Confidence 344444444333
No 55
>TIGR01411 tatAE twin arginine-targeting protein translocase, TatA/E family. This model distinguishes TatA/E from the related TatB, but does not distinguish TatA from TatE. The Tat (twin-arginine translocation) system is a Sec-independent exporter for folded proteins, often with a redox cofactor already bound, across the bacterial inner membrane. Functionally equivalent systems are found in the chloroplast and some in archaeal species. The signal peptide recognized by the Tat system is modeled by TIGR01409.
Probab=22.28 E-value=1.3e+02 Score=16.47 Aligned_cols=32 Identities=19% Similarity=0.116 Sum_probs=15.7
Q ss_pred HHHHHHHHHhhhccCCCchHHHHHHHHHHHhh
Q 046788 7 IFCLLALATIHLSSAHNKPEDYLKAHNEARAS 38 (163)
Q Consensus 7 ~~~ll~~~~~~~~~~~~~~~~iL~~hN~~R~~ 38 (163)
++++++++++.+.--.+..+.+=.....+|+.
T Consensus 9 iI~vi~llvfGp~kLP~~~r~lG~~i~~fk~~ 40 (47)
T TIGR01411 9 IILVVILLLFGAKKLPELGRDLGKAIKEFKKA 40 (47)
T ss_pred HHHHHHHHhcCchHhHHHHHHHHHHHHHHHHH
Confidence 34444444454443344455555555666653
No 56
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=21.91 E-value=69 Score=22.60 Aligned_cols=18 Identities=28% Similarity=0.315 Sum_probs=15.2
Q ss_pred HHHHHHHHHhhCCCCCcc
Q 046788 28 YLKAHNEARASVGVGPMS 45 (163)
Q Consensus 28 iL~~hN~~R~~~~m~~L~ 45 (163)
--..+|+.|.+.|++||+
T Consensus 105 ~Al~IN~~R~~~Gl~pL~ 122 (158)
T COG1019 105 GALKINEIREKRGLPPLE 122 (158)
T ss_pred hHHHHHHHHHHCCCCCeE
Confidence 345689999999999986
No 57
>PF14060 DUF4252: Domain of unknown function (DUF4252)
Probab=21.86 E-value=1.8e+02 Score=19.88 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=17.5
Q ss_pred HHHHHHHhhCCCCCcccCHHHHHHHHHH
Q 046788 30 KAHNEARASVGVGPMSWDYKLADYSHKH 57 (163)
Q Consensus 30 ~~hN~~R~~~~m~~L~Wd~~La~~Aq~~ 57 (163)
...++++..-+...+.-+..+-..+...
T Consensus 26 ~~~~~~~~~~~~~~v~i~~~ml~~~~~~ 53 (155)
T PF14060_consen 26 KYFDKYSENKGVTSVNISKSMLKLASKF 53 (155)
T ss_pred HHHHHhCCCCCeEEEEECHHHHHHHHhc
Confidence 4445777777766666666666665554
No 58
>PRK14861 tatA twin arginine translocase protein A; Provisional
Probab=20.62 E-value=1.4e+02 Score=17.49 Aligned_cols=33 Identities=12% Similarity=0.070 Sum_probs=16.1
Q ss_pred HHHHHHHHHhhhccCCCchHHHHHHHHHHHhhC
Q 046788 7 IFCLLALATIHLSSAHNKPEDYLKAHNEARASV 39 (163)
Q Consensus 7 ~~~ll~~~~~~~~~~~~~~~~iL~~hN~~R~~~ 39 (163)
++++++++++.+.--.+.-+.+=.....+|+..
T Consensus 12 iI~vi~llvfGp~kLP~l~r~~G~~~~~fk~~~ 44 (61)
T PRK14861 12 LILVVALIIFGPKKLPELGKALGKTLREFKKAT 44 (61)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443333344455555666666643
No 59
>PF07312 DUF1459: Protein of unknown function (DUF1459); InterPro: IPR009924 This family consists of several hypothetical Caenorhabditis elegans proteins of around 85 residues in length. The function of this family is unknown.
Probab=20.62 E-value=1e+02 Score=19.16 Aligned_cols=16 Identities=38% Similarity=0.343 Sum_probs=9.7
Q ss_pred CcchhHHHHHHHHHHh
Q 046788 1 MPSTSAIFCLLALATI 16 (163)
Q Consensus 1 m~~~~~~~~ll~~~~~ 16 (163)
|+..+++.++|.+++.
T Consensus 1 MF~Kc~~~l~l~~f~i 16 (84)
T PF07312_consen 1 MFQKCIIVLLLCLFCI 16 (84)
T ss_pred ChHHHHHHHHHHHHHH
Confidence 6766666666655544
No 60
>PRK14857 tatA twin arginine translocase protein A; Provisional
Probab=20.44 E-value=1.2e+02 Score=19.38 Aligned_cols=34 Identities=12% Similarity=0.050 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhhhccCCCchHHHHHHHHHHHhhC
Q 046788 6 AIFCLLALATIHLSSAHNKPEDYLKAHNEARASV 39 (163)
Q Consensus 6 ~~~~ll~~~~~~~~~~~~~~~~iL~~hN~~R~~~ 39 (163)
++|++++++++.+.--.+..+.+=.....+|+..
T Consensus 12 liIlvVaLlvfGP~KLP~lar~lGk~i~~fkk~~ 45 (90)
T PRK14857 12 AVILVIALLVFGPKKLPEIGRSLGKTLKGFQEAS 45 (90)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444443333344555556666666543
No 61
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=20.10 E-value=89 Score=22.98 Aligned_cols=8 Identities=13% Similarity=0.198 Sum_probs=3.8
Q ss_pred CcchhHHH
Q 046788 1 MPSTSAIF 8 (163)
Q Consensus 1 m~~~~~~~ 8 (163)
|..+++|+
T Consensus 1 mk~i~~l~ 8 (216)
T PF11153_consen 1 MKKILLLL 8 (216)
T ss_pred ChHHHHHH
Confidence 55444444
Done!