BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046789
(336 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FV7|A Chain A, Crystal Structure Of Human Ribokinase
pdb|2FV7|B Chain B, Crystal Structure Of Human Ribokinase
Length = 331
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 76/332 (22%), Positives = 138/332 (41%), Gaps = 62/332 (18%)
Query: 12 NRIVVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEG 71
++ + GG N AARLG ++ K+ D G E + + + T F +K+
Sbjct: 54 HKFFIGFGGKGANQCVQAARLGAMTSMVCKVGKDSFGNDYIENLKQNDISTEFTYQTKDA 113
Query: 72 NSPFTYVIVDNQMKTRTCIHTPGDPPMIPDDLSESTIFSALDGARILYLDGRL-PDTAII 130
+ +IV+N+ + I + + +DL + + + A+++ + P T++
Sbjct: 114 ATGTASIIVNNEGQNIIVIVAGANLLLNTEDLRAAA--NVISRAKVMVCQLEITPATSLE 171
Query: 131 VAQEAARKNIPILIDTERQRERID-EFLKLASYAVCSAKFPQVWTEAPSVPSAL----VS 185
A R + L + +D +F L+ C+ ++ T +V SA +
Sbjct: 172 ALTMARRSGVKTLFNPAPAIADLDPQFYTLSDVFCCNESEAEILT-GLTVGSAADAGEAA 230
Query: 186 MLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVPTCIS 245
++L + I+TLG +GC++L ++ PE + I PT
Sbjct: 231 LVLLKRGCQVVIITLGAEGCVVLSQT---EPEPKHI-------------------PT--- 265
Query: 246 SLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCA--NMSPEKM 303
EK+ + VDTTGAGD+F+GA+ + L N+S E M
Sbjct: 266 -----------------------EKV---KAVDTTGAGDSFVGALAFYLAYYPNLSLEDM 299
Query: 304 LPFAAQVAAAGCRALGARTSLPHRTDPRLASF 335
L + +AA +A G ++S P++ D L F
Sbjct: 300 LNRSNFIAAVSVQAAGTQSSYPYKKDLPLTLF 331
>pdb|1TZ6|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
pdb|1TZ6|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
Length = 339
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 124/347 (35%), Gaps = 92/347 (26%)
Query: 6 LPPLPENRIVVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFL 65
L P +N + GG + N C ARLG I + DD G+ +R+ F+ +GVD +FL
Sbjct: 37 LVPEKQNSYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFL 96
Query: 66 VVSKEGNSPFTYV--IVDNQMKTRTCIHTPGDPPMIPDDL-----SESTIFSA------- 111
+ + S V D + +H D + P DL E FS+
Sbjct: 97 RLDADLTSAVLIVNLTADGERSFTYLVHPGADTYVSPQDLPPFRQYEWFYFSSIGLTDRP 156
Query: 112 -----LDGARILYLDGR--LPDTAIIVAQEAARKNIPILIDTERQRERIDEFLKLASYAV 164
L+GAR + G L D + IP LI + + K+++ +
Sbjct: 157 AREACLEGARRMREAGGYVLFDVNLRSKMWGNTDEIPELI---ARSAALASICKVSADEL 213
Query: 165 CSAKFPQVWTEAPSVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVD 224
C W +A LR I++LG DG +++
Sbjct: 214 CQLSGASHWQDA--------RYYLRDLGCDTTIISLGADGALLI---------------- 249
Query: 225 SLLEQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGD 284
T G + P ++VDTTGAGD
Sbjct: 250 ---------------------------------TAEGEFHF----PAPRVDVVDTTGAGD 272
Query: 285 AFIGAVLYALC-ANMSPEKMLPFAAQVAAAGCRAL-----GARTSLP 325
AF+G +L+ L AN +L A A A C A+ GA T+LP
Sbjct: 273 AFVGGLLFTLSRANCWDHALLAEAISNANA-CGAMAVTAKGAMTALP 318
>pdb|2QCV|A Chain A, Crystal Structure Of A Putative
5-Dehydro-2-Deoxygluconokinase (Iolc) From Bacillus
Halodurans C-125 At 1.90 A Resolution
Length = 332
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/303 (22%), Positives = 126/303 (41%), Gaps = 54/303 (17%)
Query: 19 GGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNS---PF 75
GG+ N + +++LGL I KIADD G+ I GVDTS LVV +EG+ F
Sbjct: 44 GGSPANIVIGSSKLGLKAGFIGKIADDQHGRFIESYXRGVGVDTSNLVVDQEGHKTGLAF 103
Query: 76 TYVIVDNQMKTRTCIHTPGDPPMIPDDLSESTIFSALDGARILYLDG----RLPD-TAII 130
T + + D + P++++E+ I +++L + G + P A++
Sbjct: 104 TEIKSPEECSILXYRQDVADLYLSPEEVNEAYIRR----SKLLLVSGTALSKSPSREAVL 159
Query: 131 VAQEAARKN-IPILIDTERQRERIDEFLKLASYAVCSAKFPQVWTEAPSVPSALVSMLLR 189
A A++N + ++ + + + P W E P + S++
Sbjct: 160 KAIRLAKRNDVKVVFELDYR--------------------PYSW-ETPEETAVYYSLVAE 198
Query: 190 LPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVPTCISSLET 249
++ ++ E+ ++ R+ E+ D D + L + + + +
Sbjct: 199 QSDI---VIGTREEFDVLENRT-------EKGDNDETIRYLFKHSPELIVIKHGVEGSFA 248
Query: 250 RLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQ 309
+A G Y G A K ++++ T GAGD++ A LYAL + E L + +
Sbjct: 249 YTKA-------GEAYRGYAYK---TKVLKTFGAGDSYASAFLYALISGKGIETALKYGSA 298
Query: 310 VAA 312
A+
Sbjct: 299 SAS 301
>pdb|3NBV|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With Amp-Pnp
And Fructose
pdb|3NBV|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With Amp-Pnp
And Fructose
pdb|3NBW|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrazole Compound
pdb|3NBW|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrazole Compound
pdb|3NC2|A Chain A, X-Ray Structure Of Ketohexokinase With A Quinazoline
pdb|3NC2|B Chain B, X-Ray Structure Of Ketohexokinase With A Quinazoline
pdb|3NC9|A Chain A, X-Ray Structure Of Ketohexokinase Complexed With An
Indazole Compound
pdb|3NC9|B Chain B, X-Ray Structure Of Ketohexokinase Complexed With An
Indazole Compound
pdb|3NCA|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A Thieno
Pyridinol Compound
pdb|3NCA|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A Thieno
Pyridinol Compound
pdb|3RO4|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With An
Indazole Compound Derivative
pdb|3RO4|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With An
Indazole Compound Derivative
pdb|3Q92|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 1
pdb|3Q92|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 1
pdb|3QA2|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 2
pdb|3QA2|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 2
pdb|3QAI|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 3
pdb|3QAI|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 3
Length = 313
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/300 (22%), Positives = 119/300 (39%), Gaps = 49/300 (16%)
Query: 17 QGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFT 76
Q GGNA N+ T + LG + +A + +F GVD S + +G++P +
Sbjct: 53 QRGGNASNSCTVLSLLGAPCAFMGSMAPGHVADFLVADFRRRGVDVSQVAWQSKGDTPSS 112
Query: 77 YVIVDNQMKTRTCI-HTPGDPPMIPDDLSESTIFSALDGARILYLDGRLPDTAIIVAQEA 135
I++N RT + H P + D + L + ++++GR + + Q
Sbjct: 113 CCIINNSNGNRTIVLHDTSLPDVSATDFEKVD----LTQFKWIHIEGRNASEQVKMLQR- 167
Query: 136 ARKNIPILIDTERQRERIDEFLKLASYAVCSAKFPQVWTEAPSVPSALVSMLLRLPNLRF 195
ID R+ ++ ++++ V E P L +L
Sbjct: 168 --------IDAHNTRQPPEQKIRVS-----------VEVEKPR------EELFQL----- 197
Query: 196 AIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVPTCISSLETRLRAEG 255
G + + + V + + + L L R + AV C + E A+
Sbjct: 198 ----FGYGDVVFVSKDVAKHLGFQS--AEEALRGLYGRVR-KGAVLVCAWAEEG---ADA 247
Query: 256 IGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGC 315
+G G+L ++ PP +VDT GAGD F +V+++L S ++ L F QVA C
Sbjct: 248 LGP-DGKLL--HSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKC 304
>pdb|3B3L|A Chain A, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
pdb|3B3L|B Chain B, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
pdb|3B3L|C Chain C, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
pdb|3B3L|D Chain D, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
Length = 298
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/300 (22%), Positives = 119/300 (39%), Gaps = 49/300 (16%)
Query: 17 QGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFT 76
Q GGNA N+ T + LG + +A + +F GVD S + +G++P +
Sbjct: 38 QRGGNASNSCTVLSLLGAPCAFMGSMAPGHVADFLVADFRRRGVDVSQVAWQSKGDTPSS 97
Query: 77 YVIVDNQMKTRTCI-HTPGDPPMIPDDLSESTIFSALDGARILYLDGRLPDTAIIVAQEA 135
I++N RT + H P + D + L + ++++GR + + Q
Sbjct: 98 CCIINNSNGNRTIVLHDTSLPDVSATDFEKVD----LTQFKWIHIEGRNASEQVKMLQR- 152
Query: 136 ARKNIPILIDTERQRERIDEFLKLASYAVCSAKFPQVWTEAPSVPSALVSMLLRLPNLRF 195
ID R+ ++ ++++ V E P L +L
Sbjct: 153 --------IDAHNTRQPPEQKIRVS-----------VEVEKPR------EELFQL----- 182
Query: 196 AIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVPTCISSLETRLRAEG 255
G + + + V + + + L L R + AV C + E A+
Sbjct: 183 ----FGYGDVVFVSKDVAKHLGFQS--AEEALRGLYGRVR-KGAVLVCAWAEEG---ADA 232
Query: 256 IGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGC 315
+G G+L ++ PP +VDT GAGD F +V+++L S ++ L F QVA C
Sbjct: 233 LGP-DGKLL--HSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKC 289
>pdb|3RY7|A Chain A, Crystal Sructure Of Sa239
Length = 304
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 104/245 (42%), Gaps = 28/245 (11%)
Query: 18 GGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTY 77
GGG N AR+ + I+KI D I E+F+ +DTS+++ + E + +
Sbjct: 39 GGGKGANQAIATARMQADTTFITKIGTDGVADFILEDFKVAHIDTSYIIKTAEAKTGQAF 98
Query: 78 VIVDNQMKTRTCIHTPGDPPMIPDDLSESTIFSALDGARILYLDGRLPDTAIIVAQEAAR 137
+ V+ + + ++ + M P+D+ + A+ A + +P AII A E A+
Sbjct: 99 ITVNAEGQNTIYVYGGANMTMTPEDVINAK--DAIINADFVVAQLEVPIPAIISAFEIAK 156
Query: 138 KN-IPILIDTERQRERIDEFLKLASYAVCSAKFPQVWTEAPSVPSALVSMLLRLPN---- 192
+ + +++ + +E L L V + TEA + V+ + +
Sbjct: 157 AHGVTTVLNPAPAKALPNELLSLIDIIVPN------ETEAELLSGIKVTNEQSMKDNANY 210
Query: 193 -----LRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVPTCISSL 247
++ ++TLG+ G + N+S +E V+++ D AA T I +
Sbjct: 211 FLSIGIKTVLITLGKQGTYFATK--NQSQHIEAYKVNAI--------DTTAAGDTFIGAF 260
Query: 248 ETRLR 252
+RL
Sbjct: 261 VSRLN 265
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 277 VDTTGAGDAFIGAVLYALCANMSPEKM---LPFAAQVAAAGCRALGARTSLP 325
+DTT AGD FIGA + L N S + + + F + ++ + GA+ S+P
Sbjct: 247 IDTTAAGDTFIGAFVSRL--NKSQDNLADAIDFGNKASSLTVQKHGAQASIP 296
>pdb|1TYY|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TYY|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TZ3|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
pdb|1TZ3|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
Length = 339
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 6 LPPLPENRIVVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFL 65
L P +N + GG + N C ARLG I + DD G+ +R+ F+ +GVD +FL
Sbjct: 37 LVPEKQNSYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFL 96
Query: 66 VVSKEGNSPFTYV--IVDNQMKTRTCIHTPGDPPMIPDDL 103
+ + S V D + +H D + P DL
Sbjct: 97 RLDADLTSAVLIVNLTADGERSFTYLVHPGADTYVSPQDL 136
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 272 PPSELVDTTGAGDAFIGAVLYALC-ANMSPEKMLPFAAQVA----AAGCRALGARTSLP 325
P ++VDTTGAGDAF+G +L+ L AN +L A A A A GA T+LP
Sbjct: 260 PRVDVVDTTGAGDAFVGGLLFTLSRANCWDHALLAEAISNANACGAXAVTAKGAXTALP 318
>pdb|2HQQ|A Chain A, Crystal Structure Of Human Ketohexokinase Complexed To
Different Sugar Molecules
pdb|2HW1|A Chain A, Crystal Structure Of Human Ketohexokinase Complexed To
Different Sugar Molecules
Length = 298
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/301 (22%), Positives = 113/301 (37%), Gaps = 51/301 (16%)
Query: 17 QGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFT 76
Q GGNA N+ T + LG + +A + ++ VD + V G+ P
Sbjct: 38 QRGGNASNSCTVLSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIA 97
Query: 77 YVIVDNQMKTRTCIHTPGDPPMIPDDLSESTIFSALDGARILYLDGRLPDTAIIVAQEAA 136
VI++ +RT ILY D LPD + ++
Sbjct: 98 TVIINEASGSRT----------------------------ILYYDRSLPDVSATDFEKVD 129
Query: 137 RKNIP-ILIDTERQRERIDEFLKLASYAVCSAKFPQVWTEAPSVPSALVSMLLRLPNLR- 194
I I+ E++ ++ ++ T P VS+ + P
Sbjct: 130 LTQFKWIHIEGRNASEQVKMLQRIDAHN----------TRQPPEQKIRVSVEVEKPREEL 179
Query: 195 FAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVPTCISSLETRLRAE 254
F + G+ + + + V + + + L L R + AV C + E A+
Sbjct: 180 FQLFGYGD--VVFVSKDVAKHLGFQS--AEEALRGLYGRVR-KGAVLVCAWAEEG---AD 231
Query: 255 GIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAG 314
+G G+L ++ PP +VDT GAGD F +V+++L S ++ L F QVA
Sbjct: 232 ALGP-DGKLL--HSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKK 288
Query: 315 C 315
C
Sbjct: 289 C 289
>pdb|2HLZ|A Chain A, Crystal Structure Of Human Ketohexokinase (Casp Target)
pdb|2HLZ|B Chain B, Crystal Structure Of Human Ketohexokinase (Casp Target)
pdb|2HLZ|C Chain C, Crystal Structure Of Human Ketohexokinase (Casp Target)
pdb|2HLZ|D Chain D, Crystal Structure Of Human Ketohexokinase (Casp Target)
Length = 312
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/301 (22%), Positives = 111/301 (36%), Gaps = 51/301 (16%)
Query: 17 QGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFT 76
Q GGNA N+ T + LG A + ++ VD + V G+ P
Sbjct: 52 QRGGNASNSCTILSLLGAPCAFXGSXAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIA 111
Query: 77 YVIVDNQMKTRTCIHTPGDPPMIPDDLSESTIFSALDGARILYLDGRLPDTAIIVAQEAA 136
VI++ +RT ILY D LPD + ++
Sbjct: 112 TVIINEASGSRT----------------------------ILYYDRSLPDVSATDFEKVD 143
Query: 137 RKNIP-ILIDTERQRERIDEFLKLASYAVCSAKFPQVWTEAPSVPSALVSMLLRLPNLR- 194
I I+ E++ ++ ++ T P VS+ + P
Sbjct: 144 LTQFKWIHIEGRNASEQVKXLQRIDAHN----------TRQPPEQKIRVSVEVEKPREEL 193
Query: 195 FAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVPTCISSLETRLRAE 254
F + G+ + + + V + + + L L R + AV C + E A+
Sbjct: 194 FQLFGYGD--VVFVSKDVAKHLGFQS--AEEALRGLYGRVR-KGAVLVCAWAEEG---AD 245
Query: 255 GIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAG 314
+G G+L ++ PP +VDT GAGD F +V+++L S ++ L F QVA
Sbjct: 246 ALGP-DGKLL--HSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKK 302
Query: 315 C 315
C
Sbjct: 303 C 303
>pdb|1VM7|A Chain A, Crystal Structure Of Ribokinase (Tm0960) From Thermotoga
Maritima At 2.15 A Resolution
pdb|1VM7|B Chain B, Crystal Structure Of Ribokinase (Tm0960) From Thermotoga
Maritima At 2.15 A Resolution
Length = 311
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%)
Query: 277 VDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRALGARTSLPHRTD 329
VDTT AGD F GA AL +PE+ + F AA LGA++S+P R +
Sbjct: 251 VDTTAAGDVFNGAFAVALSEGKNPEEAVIFGTAAAAISVTRLGAQSSIPAREE 303
>pdb|1LIO|A Chain A, Structure Of Apo T. Gondii Adenosine Kinase
Length = 363
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 76/311 (24%), Positives = 118/311 (37%), Gaps = 85/311 (27%)
Query: 19 GGNAGNALTCAARLGLNPR---IISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPF 75
GG+A N++ +L P + I DDP+G+ ++E + +G+ T F+V G S
Sbjct: 68 GGSALNSVRVVQKLLRKPGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVA--PGQSTG 125
Query: 76 TYVIVDNQMKTRTCIHTPGDPPM-IPDDLSESTIFSALDGARILYLDGRLPDTAIIVAQE 134
T ++ N+ + C H IP+D T F++ GA I Y A
Sbjct: 126 TCAVLINEKERTLCTHLGACGSFRIPEDW---TTFAS--GALIFY--------ATAYTLT 172
Query: 135 AARKNIPILIDTERQRERIDEFLKLASYAVCSAKFPQVWTEAPSVPSALVSMLLRLPNLR 194
A KN L++A Y A +P+A+ ++ L P
Sbjct: 173 ATPKNA----------------LEVAGY-------------AHGIPNAIFTLNLSAP--- 200
Query: 195 FAIVTLGEDG--CIMLERSV---NESPELEEIDVDSLLEQLK---QRKDDRAAVPTCISS 246
V L +D ++L ++ NE V +L+ K + AV C +
Sbjct: 201 -FCVELYKDAMQSLLLHTNILFGNEEEFAHLAKVHNLVAADKTALSTANKEHAVEVCTGA 259
Query: 247 LETRLRAEGIGTVSGRLYIGTAEKIP-----------------------PSELVDTTGAG 283
L RL G T + +L + T P ++VDT GAG
Sbjct: 260 L--RLLTAGQNTGATKLVVMTRGHNPVIAAEQTADGTVVVHEVGVPVVAAEKIVDTNGAG 317
Query: 284 DAFIGAVLYAL 294
DAF+G LY L
Sbjct: 318 DAFVGGFLYGL 328
>pdb|2ABS|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With Amp-Pcp
pdb|2A9Y|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With N6-Dimethyladenosine
pdb|2A9Z|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With N6-Dimethyladenosine And Amp-Pcp
pdb|2AA0|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With 6-Methylmercaptopurine Riboside
pdb|2AB8|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With 6-Methylmercaptopurine Riboside And Amp-Pcp
Length = 383
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 118/311 (37%), Gaps = 85/311 (27%)
Query: 19 GGNAGNALTCAARLGLNPR---IISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPF 75
GG+A N++ +L P + I DDP+G+ ++E + +G+ T F+V G S
Sbjct: 88 GGSALNSVRVVQKLLRKPGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVA--PGQSTG 145
Query: 76 TYVIVDNQMKTRTCIHTPGDPPM-IPDDLSESTIFSALDGARILYLDGRLPDTAIIVAQE 134
++ N+ + C H +P+D T F++ GA I Y A
Sbjct: 146 VCAVLINEKERTLCTHLGACGSFRLPEDW---TTFAS--GALIFY--------ATAYTLT 192
Query: 135 AARKNIPILIDTERQRERIDEFLKLASYAVCSAKFPQVWTEAPSVPSALVSMLLRLPNLR 194
A KN L++A YA +P+A+ ++ L P
Sbjct: 193 ATPKNA----------------LEVAGYA-------------HGIPNAIFTLNLSAP--- 220
Query: 195 FAIVTLGEDG--CIMLERSV---NESPELEEIDVDSLLEQLK---QRKDDRAAVPTCISS 246
V L +D ++L ++ NE V +L+ K + AV C +
Sbjct: 221 -FCVELYKDAMQSLLLHTNILFGNEEEFAHLAKVHNLVAAEKTALSTANKEHAVEVCTGA 279
Query: 247 LETRLRAEGIGTVSGRLYIGTAEKIP-----------------------PSELVDTTGAG 283
L RL G T + +L + T P ++VDT GAG
Sbjct: 280 L--RLLTAGQNTSATKLVVMTRGHNPVIAAEQTADGTVVVHEVGVPVVAAEKIVDTNGAG 337
Query: 284 DAFIGAVLYAL 294
DAF+G LYAL
Sbjct: 338 DAFVGGFLYAL 348
>pdb|1LII|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
2 And Amp-Pcp
pdb|1LIJ|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Prodrug 2
7-Iodotubercidin And Amp-Pcp
pdb|1LIK|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
Length = 363
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 118/311 (37%), Gaps = 85/311 (27%)
Query: 19 GGNAGNALTCAARLGLNPR---IISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPF 75
GG+A N++ +L P + I DDP+G+ ++E + +G+ T F+V G S
Sbjct: 68 GGSALNSVRVVQKLLRKPGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVA--PGQSTG 125
Query: 76 TYVIVDNQMKTRTCIHTPGDPPM-IPDDLSESTIFSALDGARILYLDGRLPDTAIIVAQE 134
T ++ N+ + C H IP++ T F++ GA I Y A
Sbjct: 126 TCAVLINEKERTLCTHLGACGSFRIPENW---TTFAS--GALIFY--------ATAYTLT 172
Query: 135 AARKNIPILIDTERQRERIDEFLKLASYAVCSAKFPQVWTEAPSVPSALVSMLLRLPNLR 194
A KN L++A Y A +P+A+ ++ L P
Sbjct: 173 ATPKNA----------------LEVAGY-------------AHGIPNAIFTLNLSAP--- 200
Query: 195 FAIVTLGEDG--CIMLERSV---NESPELEEIDVDSLLEQLK---QRKDDRAAVPTCISS 246
V L +D ++L ++ NE V +L+ K + AV C +
Sbjct: 201 -FCVELYKDAMQSLLLHTNILFGNEEEFAHLAKVHNLVAAEKVALSVANKEHAVEVCTGA 259
Query: 247 LETRLRAEGIGTVSGRLYIGTAEKIP-----------------------PSELVDTTGAG 283
L RL G T + +L + T P ++VDT GAG
Sbjct: 260 L--RLLTAGQNTGATKLVVMTRGHNPVIAAEQTADGTVVVHEVGVPVVAAEKIVDTNGAG 317
Query: 284 DAFIGAVLYAL 294
DAF+G LY L
Sbjct: 318 DAFVGGFLYGL 328
>pdb|1RK2|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|B Chain B, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|C Chain C, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|D Chain D, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RKA|A Chain A, The Apo Form Of E. Coli Ribokinase
pdb|1RKS|A Chain A, E. Coli Ribokinase In Complex With D-Ribose
pdb|1GQT|A Chain A, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|B Chain B, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|C Chain C, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|D Chain D, Activation Of Ribokinase By Monovalent Cations
pdb|1RKD|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp
Length = 309
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 81/199 (40%), Gaps = 8/199 (4%)
Query: 12 NRIVVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEG 71
N V GG N A R G N I+ DD G+ +R++ D +D + + V K
Sbjct: 34 NHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGE 93
Query: 72 NSPFTYVIVDNQMKTRTCIHTPGDPPMIPDDLSESTIFSALDGARILYLDGRLPDTAIIV 131
++ + V+ + + IH + + P + A A ++ L+ P +++
Sbjct: 94 STGVALIFVNGEGENVIGIHAGANAALSPALVEAQRERIANASALLMQLES--PLESVMA 151
Query: 132 AQEAARKNIPIL-IDTERQRERIDEFLKLASY----AVCSAKFPQVWTEAPSVPSALVSM 186
A + A +N I+ ++ RE DE L L + K + E +A +
Sbjct: 152 AAKIAHQNKTIVALNPAPARELPDELLALVDIITPNETEAEKLTGIRVENDE-DAAKAAQ 210
Query: 187 LLRLPNLRFAIVTLGEDGC 205
+L +R ++TLG G
Sbjct: 211 VLHEKGIRTVLITLGSRGV 229
>pdb|1DGM|A Chain A, Crystal Structure Of Adenosine Kinase From Toxoplasma
Gondii
Length = 363
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 117/311 (37%), Gaps = 85/311 (27%)
Query: 19 GGNAGNALTCAARLGLNPR---IISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPF 75
GG+A N++ +L P + I DDP+G+ ++E + +G+ T F+V G S
Sbjct: 68 GGSALNSVRVVQKLLRKPGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVA--PGQSTG 125
Query: 76 TYVIVDNQMKTRTCIHTPGDPPM-IPDDLSESTIFSALDGARILYLDGRLPDTAIIVAQE 134
++ N+ + C H +P+D T F++ GA I Y A
Sbjct: 126 VCAVLINEKERTLCTHLGACGSFRLPEDW---TTFAS--GALIFY--------ATAYTLT 172
Query: 135 AARKNIPILIDTERQRERIDEFLKLASYAVCSAKFPQVWTEAPSVPSALVSMLLRLPNLR 194
A KN ++A YA +P+A+ ++ L P
Sbjct: 173 ATPKNA----------------FEVAGYA-------------HGIPNAIFTLNLSAP--- 200
Query: 195 FAIVTLGEDG--CIMLERSV---NESPELEEIDVDSLLEQLK---QRKDDRAAVPTCISS 246
V L +D ++L ++ NE V +L+ K + AV C +
Sbjct: 201 -FCVELYKDAMQSLLLHTNILFGNEEEFAHLAKVHNLVAAEKTALSTANKEHAVEVCTGA 259
Query: 247 LETRLRAEGIGTVSGRLYIGTAEKIP-----------------------PSELVDTTGAG 283
L RL G T + +L + T P ++VDT GAG
Sbjct: 260 L--RLLTAGQNTGATKLVVMTRGHNPVIAAEQTADGTVVVHEVGVPVVAAEKIVDTNGAG 317
Query: 284 DAFIGAVLYAL 294
DAF+G LYAL
Sbjct: 318 DAFVGGFLYAL 328
>pdb|4GM6|A Chain A, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|B Chain B, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|C Chain C, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|D Chain D, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|E Chain E, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|F Chain F, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
Length = 351
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 72/334 (21%), Positives = 115/334 (34%), Gaps = 96/334 (28%)
Query: 16 VQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPF 75
+ GG N ++LG RI + + +P GK E VDT+F+V + G+
Sbjct: 53 IHIGGAEANVAVNLSKLGHPTRIATVVPANPIGKMAVEHLWRHQVDTAFVV--EAGDRLG 110
Query: 76 TYV-----------IVDNQMKTRTCIHTPGDPPMIPDDLSESTIFSALDGARILYLDG-- 122
TY +V ++ + H D DLSE L G R+L++ G
Sbjct: 111 TYYLESGTALKAPSVVYDRQHSSFARHKSMDW-----DLSE-----LLKGIRVLHVSGIT 160
Query: 123 -----RLPDTAIIVAQEAARKNIPI---------LIDTERQRERIDEFLKLASYAVCSA- 167
+ + + +EA R I I L + E + + L L Y CSA
Sbjct: 161 IALSTFWLEMVVKIIREAKRNGIKISFDMNYRAKLWELEAAKRAYQQLLPLVDY--CSAG 218
Query: 168 -----KFPQVWTEAPSVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEID 222
F ++ +E A M + PN+ T
Sbjct: 219 QMDAVAFFEISSETTDYYQA---MHDKYPNIELFYAT----------------------- 252
Query: 223 VDSLLEQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGA 282
R + L+ L +G +E+ +VD G
Sbjct: 253 -------------KRTVISASHHLLQGHLWTQG--------ECWESEEYAIYPIVDRVGG 291
Query: 283 GDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCR 316
GDA+ AVL+ + + P++ + FA AAAG +
Sbjct: 292 GDAYTAAVLHGILSEWRPDETVKFA--TAAAGLK 323
>pdb|2RBC|A Chain A, Crystal Structure Of A Putative Ribokinase From
Agrobacterium Tumefaciens
Length = 343
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 71/325 (21%), Positives = 105/325 (32%), Gaps = 85/325 (26%)
Query: 20 GNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVI 79
G A +A R G + + DD G I + G+DTS V+ S + +I
Sbjct: 67 GXASSAAYAVHRXGGRASLWGAVGDDETGTRILRDLSESGIDTSGXTVAPGARSALSTII 126
Query: 80 VDN--------------QMKTRTCIHTPGDPPMIPDDLSESTIFSALDGARILYLDGRLP 125
+DN K R C P+D++ +F A + +D R P
Sbjct: 127 IDNRGERLIVPFYDHRLHEKKRAC---------TPEDIA---LFDA------VLVDVRWP 168
Query: 126 DTAIIVAQEAARKNIPILIDTERQ-RERIDEFLKLASYAVCSAKFPQVWTEAPSVPSALV 184
+ A+ V A P ++D + E ++ A++ V S T +V L
Sbjct: 169 ELALDVLTVARALGKPAILDGDVAPVETLEGLAPAATHIVFSEPAATRLTGLETVKDXLP 228
Query: 185 SMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVPTCI 244
+ R P F VT G GC E DD PT
Sbjct: 229 VLHARYPQT-FIAVTAGPAGCWWTE------------------------ADD----PT-- 257
Query: 245 SSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKML 304
++ T ++ E VDT AGD F G A +
Sbjct: 258 ------------------VHFQTTXQV---EAVDTLAAGDIFHGTFALAXAEGXQSRAAV 296
Query: 305 PFAAQVAAAGCRALGARTSLPHRTD 329
++ AA C G R P R +
Sbjct: 297 RLSSVAAALKCTVFGGRIGAPTREE 321
>pdb|3GBU|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|C Chain C, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|D Chain D, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3IH0|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With
Amp-Pnp
pdb|3IH0|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With
Amp-Pnp
Length = 313
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 19 GGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYV 78
GG N +RLG+ +ISK+ +DP G+ + EE + VDT +V ++ ++ +V
Sbjct: 33 GGAPANVAVGVSRLGVKSSLISKVGNDPFGEYLIEELSKENVDTRGIVKDEKKHTGIVFV 92
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 277 VDTTGAGDAFIGAVLYAL--CANMSPEKMLPFAAQVAAAGCRALGARTS 323
+DTTGAGDAF A+L + + K+ FA VAA + GA ++
Sbjct: 240 LDTTGAGDAFXAALLVGILKLKGLDLLKLGKFANLVAALSTQKRGAWST 288
>pdb|3EWM|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii
pdb|3EWM|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii
Length = 313
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 19 GGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYV 78
GG N +RLG+ +ISK+ +DP G+ + EE + VDT +V ++ ++ +V
Sbjct: 33 GGAPANVAVGVSRLGVKSSLISKVGNDPFGEYLIEELSKENVDTRGIVKDEKKHTGIVFV 92
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 277 VDTTGAGDAFIGAVLYAL--CANMSPEKMLPFAAQVAAAGCRALGARTS 323
+DTTGAGDAF A+L + + K+ FA VAA + GA ++
Sbjct: 240 LDTTGAGDAFXAALLVGILKLKGLDLLKLGKFANLVAALSTQKRGAWST 288
>pdb|3LOO|A Chain A, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|B Chain B, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|C Chain C, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
Length = 365
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 104/282 (36%), Gaps = 40/282 (14%)
Query: 19 GGNAGNALTCAARLGLNPR---IISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPF 75
GG+ N+L A + PR + D + + E ++GV+ + + SP
Sbjct: 80 GGSVQNSLRVAQWILQRPRTAIFFGCVGQDEYARILEERATSNGVNVQY---QRSATSPT 136
Query: 76 -TYVIVDNQMKTRTCIHTPGDPPMIPDDLSESTIFSALDGARILYLDGRLPDTAIIVAQE 134
T ++ + C + P+ L + L GA+ Y+ G V+ E
Sbjct: 137 GTCAVLVTGTQRSLCANLAAANDFTPEHLRSDGNRAYLQGAQFFYVSGFF----FTVSFE 192
Query: 135 AARKNIPILIDTERQRERIDEFLKLASYAVCSAKFPQVWTEAPSVPSALVSMLLRLPNLR 194
+A L +A A + + + AP VP + L +
Sbjct: 193 SA--------------------LSVAKEAAATGRMFMMNLSAPFVPQFYKNNLEEI--FP 230
Query: 195 FAIVTLG-EDGCIMLERSVNESPE-LEEIDVDSLLEQLKQRKDDRAAVPTCISSLETRLR 252
+ V G E I L + N E L EI + L + R + + L
Sbjct: 231 YVDVLFGNETEAIALAKEFNYGTEDLREIG--KRIAALPKENGKRKRIVIITQGSDPVLL 288
Query: 253 AEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYAL 294
E GT + R + +K+ P ++VDT GAGDAF+G L L
Sbjct: 289 IEA-GTDNVREF--PVQKLAPEQMVDTNGAGDAFVGGFLAQL 327
>pdb|3KTN|A Chain A, Crystal Structure Of A Putative 2-Keto-3-Deoxygluconate
Kinase From Enterococcus Faecalis
Length = 346
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 249 TRLRAEGIGTVSGRLYIGT----AEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKML 304
TR ++ +SG LY +EK P L D GAGDA+ +LY N S EK +
Sbjct: 242 TRSHSQNQNYLSGYLYTQNEYQQSEKRPLLNL-DRIGAGDAYAAGILYGYSQNWSLEKAV 300
Query: 305 PFA 307
FA
Sbjct: 301 TFA 303
>pdb|3HJ6|A Chain A, Structure Of Halothermothrix Orenii Fructokinase (Frk)
pdb|3HJ6|B Chain B, Structure Of Halothermothrix Orenii Fructokinase (Frk)
Length = 327
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 70/339 (20%), Positives = 131/339 (38%), Gaps = 63/339 (18%)
Query: 1 MSSDPLPPLPENRIVVQG-GGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADG 59
+S++ + L ++R + GG+ N +RLG +IS++ D G + + + +
Sbjct: 35 ISTEEVNSLSQSREYTRHFGGSPANIAVNLSRLGKKVALISRLGADAFGNYLLDVLKGEQ 94
Query: 60 VDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHTP---GDPPMIPDDLSESTIFSALDGAR 116
+ T + KE + YV TRT P D + DD+ IF + ++
Sbjct: 95 IITDGIQQDKERRTTIVYV----SKSTRTPDWLPYREADXYLQEDDI----IFELIKRSK 146
Query: 117 ILYLDGRLPDTAIIVAQEAARKNIPILIDTERQRERIDEFLKLASYAVCSAKFPQVWTEA 176
+ +L + I++++ AR + R++ K+ + C K +W E
Sbjct: 147 VFHL------STFILSRKPARDTAIKAFNYAREQG------KIVCFDPCYRKV--LWPE- 191
Query: 177 PSVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNES----PELEEIDVDSLLEQLKQ 232
G+DG ++E ++ + P L+ D L
Sbjct: 192 ------------------------GDDGAGVVEEIISRADFVKPSLD--DARHLFGPDSP 225
Query: 233 RKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIP--PSELVDTTGAGDAFIGAV 290
+ + + ++ L EG+ G I +IP + VD TGAGDAF
Sbjct: 226 ENYVKRYLELGVKAVILTLGEEGVIASDGEEII----RIPAFSEDAVDVTGAGDAFWSGF 281
Query: 291 LYALCANMSPEKMLPFAAQVAAAGCRALGARTSLPHRTD 329
+ L + ++ + VAA R +GA + +P + D
Sbjct: 282 ICGLLDGYTVKRSIKLGNGVAAFKIRGVGALSPVPSKED 320
>pdb|4DU5|A Chain A, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|B Chain B, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|C Chain C, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|D Chain D, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
Length = 336
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 250 RLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQ 309
+L AEG G G P +E+VDT GAGD F V+ AL + + + A
Sbjct: 252 KLGAEGA-YFDGEAGSGRVAGFPVAEVVDTVGAGDGFAVGVISALLDGLGVPEAVKRGAW 310
Query: 310 VAAAGCRALGARTSLPHRTD 329
+ A + LG LP R +
Sbjct: 311 IGARAVQVLGDSEGLPTRAE 330
>pdb|2AFB|A Chain A, Crystal Structure Of 2-Dehydro-3- Deoxygluconokinase (Ec
2.7.1.45) (Tm0067) From Thermotoga Maritima At 2.05 A
Resolution
pdb|2AFB|B Chain B, Crystal Structure Of 2-Dehydro-3- Deoxygluconokinase (Ec
2.7.1.45) (Tm0067) From Thermotoga Maritima At 2.05 A
Resolution
Length = 351
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 67/322 (20%), Positives = 115/322 (35%), Gaps = 64/322 (19%)
Query: 16 VQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPF 75
V GG N A+ GL+ ++K+ ++P G GV T + +++ GN
Sbjct: 41 VTYGGAEANVAAFLAQXGLDAYFVTKLPNNPLGDAAAGHLRKFGVKTDY--IARGGNRIG 98
Query: 76 TYVIVDNQMKTRTCIHTPGDPPMIPDDLSESTIFSA----------LDGARILYLDGRLP 125
Y + I P + D + S I A LDGAR + G P
Sbjct: 99 IYFL---------EIGASQRPSKVVYDRAHSAISEAKREDFDWEKILDGARWFHFSGITP 149
Query: 126 DTAIIVAQEAARKNIPILIDTERQRERIDEFLKLAS----YAVCSAKF-PQVWTEAPSVP 180
K +P++++ + LK+A+ C + ++WT+ +
Sbjct: 150 PLG---------KELPLILE---------DALKVANEKGVTVSCDLNYRARLWTKEEA-- 189
Query: 181 SALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAV 240
+ +P + V + + I E+ + S E ++ L + + +
Sbjct: 190 -----QKVXIPFXEYVDVLIANEEDI--EKVLGISVEGLDLKTGKLNREAYAKIAEEVTR 242
Query: 241 PTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPS-------ELVDTTGAGDAFIGAVLYA 293
++ LR E I + E P +VD GAGD+F GA++Y
Sbjct: 243 KYNFKTVGITLR-ESISATVNYWSVXVFENGQPHFSNRYEIHIVDRVGAGDSFAGALIYG 301
Query: 294 LCANMSPEKMLPFAAQVAAAGC 315
+K FA AAA C
Sbjct: 302 SLXGFDSQKKAEFA---AAASC 320
>pdb|3UBO|A Chain A, The Crystal Structure Of Adenosine Kinase From
Sinorhizobium Meliloti
pdb|3UBO|B Chain B, The Crystal Structure Of Adenosine Kinase From
Sinorhizobium Meliloti
Length = 354
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 78/208 (37%), Gaps = 29/208 (13%)
Query: 19 GGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSP---- 74
GG+AGN A LG K+ADD G+ + A GV F +G+ P
Sbjct: 60 GGSAGNTAAGVASLGGRAAYFGKVADDQLGEIFTHDIRAQGV--HFQTKPLDGHPPTARS 117
Query: 75 FTYVIVDNQMKTRTCIHTPGDPPMIPDDLSESTIFSALDGARILYLDGRLPD-------- 126
+V D + T + + P+D+ + + +++ Y +G L D
Sbjct: 118 XIFVTEDGERSXNTYLGAC--VELGPEDVEDDVVAQ----SKVTYFEGYLWDPPRAKDAI 171
Query: 127 -TAIIVAQEAARKNIPILIDTERQRERIDEFLKLASYAVCSAKFPQ-----VWTEAPSVP 180
A +A R+ L D+ EFL+L F E
Sbjct: 172 REAARIAHAHGRETAXTLSDSFCVHRYRSEFLELXRSGTVDIVFANRQEALALYETEDFD 231
Query: 181 SALVSMLLRLPNLRFAIVTLGEDGCIML 208
AL +L R + + A VTL E+G +++
Sbjct: 232 RAL-ELLAR--DCKLAAVTLSEEGSVVV 256
>pdb|3UQE|A Chain A, Crystal Structure Of The Phosphofructokinase-2 Mutant Y23d
From Escherichia Coli
pdb|3UQE|B Chain B, Crystal Structure Of The Phosphofructokinase-2 Mutant Y23d
From Escherichia Coli
Length = 309
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 272 PPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRALGARTSL-PHRTDP 330
PP + T GAGD+ +GA+ L N S E+M+ F VAA L T L H
Sbjct: 244 PPVKSQSTVGAGDSMVGAMTLKLAENASLEEMVRFG--VAAGSAATLNQGTRLCSHDDTQ 301
Query: 331 RLASFL 336
++ ++L
Sbjct: 302 KIYAYL 307
>pdb|3CQD|A Chain A, Structure Of The Tetrameric Inhibited Form Of
Phosphofructokinase-2 From Escherichia Coli
pdb|3CQD|B Chain B, Structure Of The Tetrameric Inhibited Form Of
Phosphofructokinase-2 From Escherichia Coli
pdb|3N1C|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3N1C|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3N1C|C Chain C, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3N1C|D Chain D, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3UMO|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Potassium
pdb|3UMO|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Potassium
pdb|3UMP|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Cesium And Atp
pdb|3UMP|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Cesium And Atp
pdb|3UQD|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
pdb|3UQD|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
pdb|3UQD|C Chain C, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
pdb|3UQD|D Chain D, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
Length = 309
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 272 PPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRALGARTSL-PHRTDP 330
PP + T GAGD+ +GA+ L N S E+M+ F VAA L T L H
Sbjct: 244 PPVKSQSTVGAGDSMVGAMTLKLAENASLEEMVRFG--VAAGSAATLNQGTRLCSHDDTQ 301
Query: 331 RLASFL 336
++ ++L
Sbjct: 302 KIYAYL 307
>pdb|3PL2|A Chain A, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum
Atcc 13032 Kitasato At 1.89 A Resolution
pdb|3PL2|B Chain B, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum
Atcc 13032 Kitasato At 1.89 A Resolution
pdb|3PL2|C Chain C, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum
Atcc 13032 Kitasato At 1.89 A Resolution
pdb|3PL2|D Chain D, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum
Atcc 13032 Kitasato At 1.89 A Resolution
Length = 319
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 19 GGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTY 77
GG+A N AAR G N ++S++ +DP G+ + E E GVD ++ + +P T+
Sbjct: 41 GGSAANVSVAAARHGHNSALLSRVGNDPFGEYLLAELERLGVDNQYVATDQTFKTPVTF 99
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 270 KIPP--SELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRALGARTSLP 325
++PP ++++ GAGDAF GA+ + L + EK+L FA A L T+ P
Sbjct: 249 EVPPFFVDVINGLGAGDAFGGALCHGLLSEWPLEKVLRFANTAGALVASRLECSTAXP 306
>pdb|3Q1Y|A Chain A, Allosteric Regulation By Lysine Residue: A Novel
Anion-Hole Formation In The Ribokinase Family
Length = 320
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 10/59 (16%)
Query: 260 SGRLYIGTAEKIPPS-ELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRA 317
+G+LY + IPP + + TGAGD F+GA + L NM + L A GC A
Sbjct: 232 NGKLY----QVIPPKVQERNDTGAGDVFVGAFIAGLAMNMPITETLK-----VATGCSA 281
>pdb|2V78|A Chain A, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2V78|B Chain B, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2V78|C Chain C, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2VAR|A Chain A, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
pdb|2VAR|B Chain B, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
pdb|2VAR|C Chain C, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
Length = 313
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 10/114 (8%)
Query: 2 SSDPLPPLPENRIVVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVD 61
S +P P N G+ N R L+ +I+++ +D GK I E A G+D
Sbjct: 16 SFNPGPLRFVNYFEKHVAGSELNFCIAVVRNHLSCSLIARVGNDEFGKNIIEYSRAQGID 75
Query: 62 TSFLVVSKEGNSPFTYVIVDNQ-----MKTRTCIHTPGD--PPMIPDDLSESTI 108
TS + V N FT + + MK+ + G + P+D++E+ +
Sbjct: 76 TSHIKVD---NESFTGIYFIQRGYPIPMKSELVYYRKGSAGSRLSPEDINENYV 126
>pdb|2QHP|A Chain A, Crystal Structure Of Fructokinase (Np_810670.1) From
Bacteroides Thetaiotaomicron Vpi-5482 At 1.80 A
Resolution
Length = 296
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Query: 269 EKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLP----FAAQVAAAGCRALGARTSL 324
++ P + DT GAGD+F A CA++ K +P A +V+A C GA L
Sbjct: 232 QETPKVPVADTVGAGDSFTA----AFCASILNGKSVPEAHKLAVEVSAYVCTQSGAXPEL 287
Query: 325 PHRTDPRL 332
P RL
Sbjct: 288 PVILKDRL 295
>pdb|2ABQ|A Chain A, Crystal Structure Of Fructose-1-Phosphate Kinase From
Bacillus Halodurans
pdb|2ABQ|B Chain B, Crystal Structure Of Fructose-1-Phosphate Kinase From
Bacillus Halodurans
Length = 306
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 271 IPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRAL 318
+P E+ ++ GAGD+ + L AL S E +PFA VAA A
Sbjct: 236 VPSGEVRNSVGAGDSVVAGFLAALQEGKSLEDAVPFA--VAAGSATAF 281
>pdb|1V19|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V19|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V1A|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1A|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1B|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1S|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|E Chain E, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|F Chain F, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
Length = 309
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 55/141 (39%), Gaps = 22/141 (15%)
Query: 19 GGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSP-FTY 77
GG N ARLG+ + ++ +D G + E A+GVD + +P FT
Sbjct: 33 GGAEVNVAVALARLGVKVGFVGRVGEDELGAMVEERLRAEGVDLTHFR-----RAPGFTG 87
Query: 78 VIVDNQM---KTRTCIHTPGDP--PMIPDDLSESTIFSALDGARILYLDGRLPDT----- 127
+ + + + R + G + P L+G R L+L G P
Sbjct: 88 LYLREYLPLGQGRVFYYRKGSAGSALAPGAFDPDY----LEGVRFLHLSGITPALSPEAR 143
Query: 128 --AIIVAQEAARKNIPILIDT 146
++ +EA R+ + + +D
Sbjct: 144 AFSLWAMEEAKRRGVRVSLDV 164
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 259 VSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRAL 318
V GR G+A + E VD GAGDAF L + E+ L A + A+ +
Sbjct: 229 VDGRRVEGSAFAV---EAVDPVGAGDAFAAGYLAGAVWGLPVEERLRLANLLGASVAASR 285
Query: 319 GARTSLPHRTD 329
G P+R D
Sbjct: 286 GDHEGAPYRED 296
>pdb|3H49|A Chain A, Crystal Structure Of A Putative Ribokinase (Apo Form)
From E.Coli At 1.8a Resolution
pdb|3H49|B Chain B, Crystal Structure Of A Putative Ribokinase (Apo Form)
From E.Coli At 1.8a Resolution
pdb|3IN1|A Chain A, Crystal Structure Of A Putative Ribokinase In Complex
With Adp From E.Coli
pdb|3IN1|B Chain B, Crystal Structure Of A Putative Ribokinase In Complex
With Adp From E.Coli
Length = 325
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 10/71 (14%)
Query: 5 PLPPLPEN----------RIVVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREE 54
PL P+ +N RI GG+A N T +RLG + S+I D G+ I +
Sbjct: 19 PLQPVSKNIFDVDSYPLERIAXTTGGDAINEATIISRLGHRTALXSRIGKDAAGQFILDH 78
Query: 55 FEADGVDTSFL 65
+ +D L
Sbjct: 79 CRKENIDIQSL 89
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 277 VDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRALGARTSLPHR 327
+DT GAGD F + AL + + FA AA ++GA T + +R
Sbjct: 255 IDTIGAGDNFASGFIAALLEGKNLRECARFANATAAISVLSVGATTGVKNR 305
>pdb|2DCN|A Chain A, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|B Chain B, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|C Chain C, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|D Chain D, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|E Chain E, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|F Chain F, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|G Chain G, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|H Chain H, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|I Chain I, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|J Chain J, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|K Chain K, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|L Chain L, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|1WYE|A Chain A, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|B Chain B, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|C Chain C, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|D Chain D, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|E Chain E, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|F Chain F, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
Length = 311
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 261 GRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRALGA 320
G+ Y + ++P + D TGAGDA G L EK L +A + G
Sbjct: 236 GKKYYSSGYQVP---VEDVTGAGDALGGTFLSLYYKGFEMEKALDYAIVASTLNVMIRGD 292
Query: 321 RTSLPHRTDPRLASFL 336
+ +LP D + +FL
Sbjct: 293 QENLPTTKD--IETFL 306
>pdb|1BX4|A Chain A, Structure Of Human Adenosine Kinase At 1.50 Angstroms
pdb|2I6A|A Chain A, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|B Chain B, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|C Chain C, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|D Chain D, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6B|A Chain A, Human Adenosine Kinase In Complex With An Acetylinic
Inhibitor
pdb|2I6B|B Chain B, Human Adenosine Kinase In Complex With An Acetylinic
Inhibitor
Length = 345
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 275 ELVDTTGAGDAFIGAVLYALCAN 297
E++DT GAGDAF+G L L ++
Sbjct: 291 EIIDTNGAGDAFVGGFLSQLVSD 313
>pdb|2XTB|A Chain A, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Activator
pdb|3OTX|A Chain A, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Inhibitor Ap5a
pdb|3OTX|B Chain B, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Inhibitor Ap5a
Length = 347
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 55/141 (39%), Gaps = 11/141 (7%)
Query: 4 DPLPPLPENRIVVQGGGNAGNALTCA-----ARLGLNPRIISKIADDPQGKGIREEFEAD 58
D + +P R V GG+ N A A G + IADD GK ++E E +
Sbjct: 51 DDIEKMPNVRYV--PGGSGLNVARVAQWMQQAYKGKFVTYVGCIADDRYGKVLKEAAEHE 108
Query: 59 GVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHTPGDPPMIPDDLSES-TIFSALDGARI 117
G+ + +K G+ I K RT + G + + S + A+D +RI
Sbjct: 109 GIVMAVEHTTKAGSGACAVCITG---KERTLVADLGAANHLSSEHMRSPAVVRAMDESRI 165
Query: 118 LYLDGRLPDTAIIVAQEAARK 138
Y G + +A RK
Sbjct: 166 FYFSGFTLTVDVNHVLQACRK 186
>pdb|2AJR|A Chain A, Crystal Structure Of Possible 1-Phosphofructokinase (Ec
2.7.1.56) (Tm0828) From Thermotoga Maritima At 2.46 A
Resolution
pdb|2AJR|B Chain B, Crystal Structure Of Possible 1-Phosphofructokinase (Ec
2.7.1.56) (Tm0828) From Thermotoga Maritima At 2.46 A
Resolution
Length = 331
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 69/312 (22%), Positives = 108/312 (34%), Gaps = 76/312 (24%)
Query: 19 GGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFE--ADGVDTSFLVVSKEGNSPFT 76
GG N ++LG+ P + + GK + EE + + T+F+ V EG +
Sbjct: 51 GGKGINVSIALSKLGV-PSVATGFVGGYXGKILVEELRKISKLITTNFVYV--EGETREN 107
Query: 77 YVIVDNQMKTRTCIHTPGDPPMIPDDLSESTIFSALDGARILYLDGRLPDTAIIVAQEAA 136
I+D + KT T I+ PG P + D
Sbjct: 108 IEIIDEKNKTITAINFPG--PDVTD----------------------------------- 130
Query: 137 RKNIPILIDTERQRERIDEFLKLASYAVCSAKFPQVWTEAPSVPSALVSMLLRLPNLRFA 196
D R L V S P P V + + L+RL R
Sbjct: 131 -------XDVNHFLRRYKXTLSKVDCVVISGSIP------PGVNEGICNELVRLARER-G 176
Query: 197 IVTLGEDGCIMLERSVNESPELEEI--------DVDSLLEQLKQRKD-----DRAAVPTC 243
+ E +LER + E PE + L LK D ++ A +
Sbjct: 177 VFVFVEQTPRLLER-IYEGPEFPNVVKPDLRGNHASFLGVDLKTFDDYVKLAEKLAEKSQ 235
Query: 244 ISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALC---ANMSP 300
+S + ++ + + T G I + E+I S L+ GAGDA++ +Y AN
Sbjct: 236 VSVVSYEVKNDIVATREGVWLIRSKEEIDTSHLL---GAGDAYVAGXVYYFIKHGANFLE 292
Query: 301 EKMLPFAAQVAA 312
FA+ +AA
Sbjct: 293 XAKFGFASALAA 304
>pdb|2C49|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
pdb|2C49|B Chain B, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
pdb|2C4E|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
Length = 302
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 271 IPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRALGARTSLP 325
I +++D TGAGD++ L A EK A A+ A G +T+LP
Sbjct: 234 IKAGKVIDPTGAGDSYRAGFLSAYVKGYDLEKCGLIGAATASFVVEAKGCQTNLP 288
>pdb|2QLH|A Chain A, Mplum I65l Mutant
pdb|2QLH|B Chain B, Mplum I65l Mutant
Length = 224
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 6/90 (6%)
Query: 58 DGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHTPGDPP-----MIPDDLSESTIFSAL 112
+G T+ L V+K G PF + I+ Q+ ++ + P D P P+ + +
Sbjct: 40 EGTQTARLKVTKGGPLPFAWDILSPQLXSKAYVKHPADIPDYLKLSFPEGFKWERVMNFE 99
Query: 113 DGARI-LYLDGRLPDTAIIVAQEAARKNIP 141
DG + + D L D I + N P
Sbjct: 100 DGGVVTVTQDSSLQDGEFIYKVKVRGTNFP 129
>pdb|4H3M|A Chain A, Mplumayc-e16a
pdb|4H3M|B Chain B, Mplumayc-e16a
Length = 232
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 6/90 (6%)
Query: 58 DGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHTPGDPP-----MIPDDLSESTIFSAL 112
+G T+ L V+K G PF + I+ Q+ ++ + P D P P+ + +
Sbjct: 48 EGTQTARLKVTKGGPLPFAWDILSPQIXSKAYVKHPADIPDYLKLSFPEGFKWERVMNFE 107
Query: 113 DGARI-LYLDGRLPDTAIIVAQEAARKNIP 141
DG + + D L D I + N P
Sbjct: 108 DGGVVTVTQDSSLQDGEFIYKVKVRGTNFP 137
>pdb|4H3N|A Chain A, Mplumayc
Length = 232
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 6/90 (6%)
Query: 58 DGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHTPGDPP-----MIPDDLSESTIFSAL 112
+G T+ L V+K G PF + I+ Q+ ++ + P D P P+ + +
Sbjct: 48 EGTQTARLKVTKGGPLPFAWDILSPQIXSKAYVKHPADIPDYLKLSFPEGFKWERVMNFE 107
Query: 113 DGARI-LYLDGRLPDTAIIVAQEAARKNIP 141
DG + + D L D I + N P
Sbjct: 108 DGGVVTVTQDSSLQDGEFIYKVKVRGTNFP 137
>pdb|4H3L|A Chain A, Mplum-e16p
pdb|4H3L|B Chain B, Mplum-e16p
Length = 232
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 6/90 (6%)
Query: 58 DGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHTPGDPP-----MIPDDLSESTIFSAL 112
+G T+ L V+K G PF + I+ Q+ ++ + P D P P+ + +
Sbjct: 48 EGTQTARLKVTKGGPLPFAWDILSPQIXSKAYVKHPADIPDYLKLSFPEGFKWERVMNFE 107
Query: 113 DGARI-LYLDGRLPDTAIIVAQEAARKNIP 141
DG + + D L D I + N P
Sbjct: 108 DGGVVTVTQDSSLQDGEFIYKVKVRGTNFP 137
>pdb|3HIC|A Chain A, The Crystal Structure Of Phosphofructokinase(Lin2199)from
Listeria Innocua
pdb|3IE7|A Chain A, The Crystal Structure Of Phosphofructokinase (Lin2199)
From Listeria Innocua In Complex With Atp At 1.6a
pdb|3JUL|A Chain A, Crystal Structure Of Listeria Innocua
D-Tagatose-6-Phosphate Kinase Bound With Substrate
Length = 320
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 10/59 (16%)
Query: 260 SGRLYIGTAEKIPPS-ELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRA 317
+G+LY + IPP + + TGAGD F+GA + L N + L A GC A
Sbjct: 232 NGKLY----QVIPPKVQERNDTGAGDVFVGAFIAGLAXNXPITETLK-----VATGCSA 281
>pdb|2QLI|A Chain A, Mplum E16q Mutant
pdb|2QLI|B Chain B, Mplum E16q Mutant
Length = 224
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 6/90 (6%)
Query: 58 DGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHTPGDPP-----MIPDDLSESTIFSAL 112
+G T+ L V+K G PF + I+ Q+ ++ + P D P P+ + +
Sbjct: 40 EGTQTARLKVTKGGPLPFAWDILSPQIXSKAYVKHPADIPDYLKLSFPEGFKWERVMNFE 99
Query: 113 DGARI-LYLDGRLPDTAIIVAQEAARKNIP 141
DG + + D L D I + N P
Sbjct: 100 DGGVVTVTQDSSLQDGEFIYKVKVRGTNFP 129
>pdb|2QLG|A Chain A, Mplum
pdb|2QLG|B Chain B, Mplum
Length = 224
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 6/90 (6%)
Query: 58 DGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHTPGDPP-----MIPDDLSESTIFSAL 112
+G T+ L V+K G PF + I+ Q+ ++ + P D P P+ + +
Sbjct: 40 EGTQTARLKVTKGGPLPFAWDILSPQIXSKAYVKHPADIPDYLKLSFPEGFKWERVMNFE 99
Query: 113 DGARI-LYLDGRLPDTAIIVAQEAARKNIP 141
DG + + D L D I + N P
Sbjct: 100 DGGVVTVTQDSSLQDGEFIYKVKVRGTNFP 129
>pdb|3NF0|A Chain A, Mplum-Ttn
Length = 232
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 6/90 (6%)
Query: 58 DGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHTPGDPP-----MIPDDLSESTIFSAL 112
+G T+ L V+K G PF + I+ Q+ ++ + P D P P+ + +
Sbjct: 48 EGTQTARLKVTKGGPLPFAWDILSPQIXSKAYVKHPADIPDYLKLSFPEGFKWERVMNFE 107
Query: 113 DGARI-LYLDGRLPDTAIIVAQEAARKNIP 141
DG + + D L D I + N P
Sbjct: 108 DGGVVTVTQDSSLQDGEFIYKVKVRGTNFP 137
>pdb|3KCS|A Chain A, Crystal Structure Of Pamcherry1 In The Dark State
pdb|3KCT|A Chain A, Crystal Structure Of Pamcherry1 In The Photoactivated
State
Length = 234
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 6/90 (6%)
Query: 58 DGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHTPGDPP-----MIPDDLSESTIFSAL 112
+G T+ L V+K G PFT+ I+ Q + + P D P P+ +
Sbjct: 44 EGTQTAKLKVTKGGPLPFTWDILSPQFXSNAYVKHPADIPDYFKLSFPEGFKWERVMKFE 103
Query: 113 DGARI-LYLDGRLPDTAIIVAQEAARKNIP 141
DG + + D L D I + N P
Sbjct: 104 DGGVVTVTQDSSLQDGEFIYKVKLRGTNFP 133
>pdb|2H5O|A Chain A, Crystal Structure Of Morange
pdb|2H5O|B Chain B, Crystal Structure Of Morange
Length = 234
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
Query: 58 DGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHTPGDPP-----MIPDDLSESTIFSAL 112
+G T+ L V+K G PF + I+ Q ++ + P D P P+ + +
Sbjct: 44 EGFQTAKLKVTKGGPLPFAWDILSPQFXSKAYVKHPADIPDYFKLSFPEGFKWERVMNFE 103
Query: 113 DGARI-LYLDGRLPDTAIIVAQEAARKNIP 141
DG + + D L D I + N P
Sbjct: 104 DGGVVTVTQDSSLQDGEFIYKVKLRGTNFP 133
>pdb|4E3A|A Chain A, Crystal Structure Of Probable Sugar Kinase Protein From
Rhizobium Etli Cfn 42
pdb|4E3A|B Chain B, Crystal Structure Of Probable Sugar Kinase Protein From
Rhizobium Etli Cfn 42
Length = 352
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 262 RLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPE 301
R Y+ I E+VDTTGAGD F LY S E
Sbjct: 281 RYYV---NAIRIREVVDTTGAGDLFASGFLYGYTQGRSLE 317
>pdb|2H5Q|A Chain A, Crystal Structure Of Mcherry
Length = 234
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
Query: 58 DGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHTPGDPP-----MIPDDLSESTIFSAL 112
+G T+ L V+K G PF + I+ Q ++ + P D P P+ + +
Sbjct: 44 EGTQTAKLKVTKGGPLPFAWDILSPQFXSKAYVKHPADIPDYLKLSFPEGFKWERVMNFE 103
Query: 113 DGARI-LYLDGRLPDTAIIVAQEAARKNIP 141
DG + + D L D I + N P
Sbjct: 104 DGGVVTVTQDSSLQDGEFIYKVKLRGTNFP 133
>pdb|3KZH|A Chain A, Crystal Structure Of A Putative Sugar Kinase From
Clostridium Perfringens
pdb|3KZH|B Chain B, Crystal Structure Of A Putative Sugar Kinase From
Clostridium Perfringens
Length = 328
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 33/78 (42%)
Query: 13 RIVVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGN 72
+ + GG N AR+G+N S + +D GK I E + G V + G+
Sbjct: 36 HVKISFGGVCRNIAENXARVGVNTNFXSILGNDEHGKSIVEHSKKIGYHXDDSXVIEGGS 95
Query: 73 SPFTYVIVDNQMKTRTCI 90
+P I+D + + I
Sbjct: 96 TPTYLAILDENGEXVSAI 113
>pdb|3I3Y|A Chain A, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|B Chain B, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|C Chain C, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|D Chain D, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3IKH|A Chain A, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|B Chain B, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|C Chain C, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|D Chain D, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
Length = 299
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 19/87 (21%)
Query: 6 LPPLPENRIVVQG-------GGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEA- 57
+P +P+ + G GG N +R G+ R+I+ +D G IR++ +
Sbjct: 19 IPDIPKKGASIHGVKVSQDIGGKGANQAIILSRCGIETRLIAATGNDSNGAWIRQQIKNE 78
Query: 58 ------DG-----VDTSFLVVSKEGNS 73
DG DTS ++ S +G++
Sbjct: 79 PLXLLPDGHFNQHSDTSIILNSADGDN 105
>pdb|3LJS|A Chain A, Crystal Structure Of Fructokinase From Xylella Fastidiosa
pdb|3LJS|B Chain B, Crystal Structure Of Fructokinase From Xylella Fastidiosa
pdb|3LKI|A Chain A, Crystal Structure Of Fructokinase With Bound Atp From
Xylella Fastidiosa
pdb|3LKI|B Chain B, Crystal Structure Of Fructokinase With Bound Atp From
Xylella Fastidiosa
Length = 338
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 14/65 (21%)
Query: 275 ELVDTTGAGDAFIGAVLYALCANM-----------SPEKM---LPFAAQVAAAGCRALGA 320
++ D+ AGDAF+G LY PE + L FAA V A GA
Sbjct: 253 QVQDSNAAGDAFVGGXLYTFAQQFDDAAALIDFCHDPESIVSTLRFAAAVGALAVTRQGA 312
Query: 321 RTSLP 325
T+ P
Sbjct: 313 FTAXP 317
>pdb|2VAE|A Chain A, Fast Maturing Red Fluorescent Protein, Dsred.T4
pdb|2VAE|B Chain B, Fast Maturing Red Fluorescent Protein, Dsred.T4
pdb|2VAE|C Chain C, Fast Maturing Red Fluorescent Protein, Dsred.T4
pdb|2VAE|D Chain D, Fast Maturing Red Fluorescent Protein, Dsred.T4
pdb|2VAE|E Chain E, Fast Maturing Red Fluorescent Protein, Dsred.T4
pdb|2VAE|F Chain F, Fast Maturing Red Fluorescent Protein, Dsred.T4
pdb|2VAE|G Chain G, Fast Maturing Red Fluorescent Protein, Dsred.T4
pdb|2VAE|H Chain H, Fast Maturing Red Fluorescent Protein, Dsred.T4
Length = 223
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
Query: 58 DGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHTPGDPP-----MIPDDLSESTIFSAL 112
+G T+ L V+K G PF + I+ Q ++ + P D P P+ + +
Sbjct: 39 EGTQTAKLKVTKGGPLPFAWDILSPQFXSKVYVKHPADIPDYKKLSFPEGFKWERVMNFE 98
Query: 113 DGARI-LYLDGRLPDTAIIVAQEAARKNIP 141
DG + + D L D I + N P
Sbjct: 99 DGGVVTVTQDSSLQDGCFIYKVKFIGVNFP 128
>pdb|3MXO|A Chain A, Crystal Structure Oh Human Phosphoglycerate Mutase Family
Member 5 (Pgam5)
pdb|3MXO|B Chain B, Crystal Structure Oh Human Phosphoglycerate Mutase Family
Member 5 (Pgam5)
pdb|3O0T|A Chain A, Crystal Structure Of Human Phosphoglycerate Mutase Family
Member 5 (Pgam5) In Complex With Phosphate
pdb|3O0T|B Chain B, Crystal Structure Of Human Phosphoglycerate Mutase Family
Member 5 (Pgam5) In Complex With Phosphate
Length = 202
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 134 EAARKNIPILIDTERQRERIDEFLKLAS---YAVCSA-KFP-QVWTEAPSVPSALVSMLL 188
EAA +N D ++ + + F+ A+ Y VC A +FP + W ++ +++
Sbjct: 118 EAAFRNYIHRADARQEEDSYEIFICHANVIRYIVCRALQFPPEGWLRLSLNNGSITHLVI 177
Query: 189 RLPNLRFAIVTLGEDGCI 206
R PN R A+ TLG+ G +
Sbjct: 178 R-PNGRVALRTLGDTGFM 194
>pdb|3B1N|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Mizoribine
pdb|3B1N|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Mizoribine
pdb|3B1O|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Ligand-Free Form
pdb|3B1O|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Ligand-Free Form
pdb|3B1P|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Inosine
pdb|3B1Q|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|C Chain C, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|D Chain D, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|E Chain E, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|F Chain F, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
Length = 326
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 269 EKIPP---SELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRALGARTSLP 325
E+IP ++D TG GDAF G +LY + A+ + A G +T P
Sbjct: 235 EQIPAVRAERVIDPTGCGDAFRGGLLYGIEHGFDWATAGRLASLMGALKIAHQGPQTYAP 294
Query: 326 HRTD 329
R +
Sbjct: 295 TRAE 298
>pdb|3B1R|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|C Chain C, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|D Chain D, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|E Chain E, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|F Chain F, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
Length = 320
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 269 EKIPP---SELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRALGARTSLP 325
E+IP ++D TG GDAF G +LY + A+ + A G +T P
Sbjct: 243 EQIPAVRAERVIDPTGCGDAFRGGLLYGIEHGFDWATAGRLASLMGALKIAHQGPQTYAP 302
Query: 326 HRTD 329
R +
Sbjct: 303 TRAE 306
>pdb|2VAD|A Chain A, Monomeric Red Fluorescent Protein, Dsred.m1
Length = 223
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 8/101 (7%)
Query: 47 QGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHTPGDPP-----MIPD 101
+G+G + +E G T+ L V+K G PF + I+ Q ++ + P D P P+
Sbjct: 30 EGEGEGKPYE--GTQTAKLQVTKGGPLPFAWDILSPQFXSKAYVKHPADIPDYMKLSFPE 87
Query: 102 DLSESTIFSALDGARI-LYLDGRLPDTAIIVAQEAARKNIP 141
+ + DG + + D L D I + N P
Sbjct: 88 GFTWERSMNFEDGGVVEVQQDSSLQDGTFIYKVKFKGVNFP 128
>pdb|2V4E|A Chain A, A Non-Cytotoxic Dsred Variant For Whole-Cell Labeling
Length = 218
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 6/90 (6%)
Query: 58 DGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHTPGDPP-----MIPDDLSESTIFSAL 112
+G T+ L V+K G PF + I+ Q ++ P D P P+ + +
Sbjct: 34 EGTQTAKLKVTKGGPLPFAWDILSPQFXSKVYTKHPADIPDYKKLSFPEGFKWERVMNFE 93
Query: 113 DGARI-LYLDGRLPDTAIIVAQEAARKNIP 141
DG + + D L D I + N P
Sbjct: 94 DGGVVTVTQDSSLQDGTFIYHVKFIGVNFP 123
>pdb|2V4E|B Chain B, A Non-Cytotoxic Dsred Variant For Whole-Cell Labeling
Length = 218
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 6/90 (6%)
Query: 58 DGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHTPGDPP-----MIPDDLSESTIFSAL 112
+G T+ L V+K G PF + I+ Q ++ P D P P+ + +
Sbjct: 34 EGTQTAKLQVTKGGPLPFAWDILSPQFXSKVYTKHPADIPDYKKLSFPEGFKWERVMNFE 93
Query: 113 DGARI-LYLDGRLPDTAIIVAQEAARKNIP 141
DG + + D L D I + N P
Sbjct: 94 DGGVVTVTQDSSLQDGVFIYHVKFIGVNFP 123
>pdb|2V4E|C Chain C, A Non-Cytotoxic Dsred Variant For Whole-Cell Labeling
pdb|2V4E|D Chain D, A Non-Cytotoxic Dsred Variant For Whole-Cell Labeling
pdb|2V4E|E Chain E, A Non-Cytotoxic Dsred Variant For Whole-Cell Labeling
pdb|2V4E|F Chain F, A Non-Cytotoxic Dsred Variant For Whole-Cell Labeling
pdb|2V4E|G Chain G, A Non-Cytotoxic Dsred Variant For Whole-Cell Labeling
pdb|2V4E|H Chain H, A Non-Cytotoxic Dsred Variant For Whole-Cell Labeling
Length = 218
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 6/90 (6%)
Query: 58 DGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHTPGDPP-----MIPDDLSESTIFSAL 112
+G T+ L V+K G PF + I+ Q ++ P D P P+ + +
Sbjct: 34 EGTQTAKLQVTKGGPLPFAWDILSPQFXSKVYTKHPADIPDYKKLSFPEGFKWERVMNFE 93
Query: 113 DGARI-LYLDGRLPDTAIIVAQEAARKNIP 141
DG + + D L D I + N P
Sbjct: 94 DGGVVTVTQDSSLQDGTFIYHVKFIGVNFP 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,763,574
Number of Sequences: 62578
Number of extensions: 394925
Number of successful extensions: 1102
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1015
Number of HSP's gapped (non-prelim): 98
length of query: 336
length of database: 14,973,337
effective HSP length: 99
effective length of query: 237
effective length of database: 8,778,115
effective search space: 2080413255
effective search space used: 2080413255
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)