Query 046789
Match_columns 336
No_of_seqs 106 out of 1172
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 04:30:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046789.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046789hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11142 ribokinase; Provision 100.0 9.1E-41 2E-45 308.7 24.2 273 3-332 18-301 (306)
2 PTZ00292 ribokinase; Provision 100.0 6.6E-40 1.4E-44 305.8 25.5 275 3-333 31-323 (326)
3 cd01174 ribokinase Ribokinase 100.0 3E-39 6.6E-44 296.4 26.2 267 3-326 15-292 (292)
4 PLN02967 kinase 100.0 4.1E-39 8.8E-44 313.7 26.2 265 14-333 238-544 (581)
5 cd01945 ribokinase_group_B Rib 100.0 1.2E-38 2.7E-43 291.4 27.1 262 3-326 15-284 (284)
6 TIGR02152 D_ribokin_bact ribok 100.0 2.5E-38 5.4E-43 290.7 26.4 272 3-331 10-293 (293)
7 PLN02341 pfkB-type carbohydrat 100.0 3.3E-38 7.2E-43 306.5 25.7 274 2-331 87-404 (470)
8 cd01939 Ketohexokinase Ketohex 100.0 6.5E-38 1.4E-42 287.7 25.5 263 2-320 14-289 (290)
9 PLN02323 probable fructokinase 100.0 7.9E-38 1.7E-42 292.3 26.2 259 15-332 39-323 (330)
10 PRK09434 aminoimidazole ribosi 100.0 1.8E-37 4E-42 286.5 26.8 269 3-331 12-304 (304)
11 PLN02543 pfkB-type carbohydrat 100.0 1.6E-37 3.5E-42 299.8 27.2 265 14-332 167-485 (496)
12 PLN02813 pfkB-type carbohydrat 100.0 7.4E-38 1.6E-42 300.1 23.1 256 15-331 122-402 (426)
13 PRK09850 pseudouridine kinase; 100.0 2.3E-37 5.1E-42 287.0 24.4 262 14-332 35-304 (313)
14 cd01168 adenosine_kinase Adeno 100.0 3.6E-37 7.9E-42 285.6 23.9 248 14-322 50-311 (312)
15 COG0524 RbsK Sugar kinases, ri 100.0 7.5E-37 1.6E-41 283.3 25.6 273 4-332 17-305 (311)
16 PRK15074 inosine/guanosine kin 100.0 1.9E-36 4.1E-41 288.9 27.3 290 15-334 88-430 (434)
17 PTZ00247 adenosine kinase; Pro 100.0 7.9E-37 1.7E-41 287.2 24.0 259 15-328 58-340 (345)
18 TIGR03828 pfkB 1-phosphofructo 100.0 7E-37 1.5E-41 282.5 22.7 266 3-332 15-297 (304)
19 KOG2855 Ribokinase [Carbohydra 100.0 7E-37 1.5E-41 274.9 21.7 276 2-335 24-325 (330)
20 cd01942 ribokinase_group_A Rib 100.0 3.1E-36 6.7E-41 274.7 26.4 250 3-320 15-278 (279)
21 cd01166 KdgK 2-keto-3-deoxyglu 100.0 6E-36 1.3E-40 274.7 25.9 250 13-320 25-293 (294)
22 cd01944 YegV_kinase_like YegV- 100.0 6.5E-36 1.4E-40 274.2 25.6 256 3-319 15-289 (289)
23 PLN02379 pfkB-type carbohydrat 100.0 2.8E-36 6E-41 284.7 23.1 250 13-322 80-343 (367)
24 cd01167 bac_FRK Fructokinases 100.0 1.1E-35 2.3E-40 273.3 25.1 258 4-320 10-294 (295)
25 PRK09954 putative kinase; Prov 100.0 8.5E-36 1.8E-40 281.9 23.9 259 6-322 77-347 (362)
26 cd01940 Fructoselysine_kinase_ 100.0 2.5E-35 5.4E-40 266.8 25.2 250 3-320 9-263 (264)
27 PLN02548 adenosine kinase 100.0 1E-35 2.2E-40 278.3 21.8 266 4-322 32-325 (332)
28 TIGR02198 rfaE_dom_I rfaE bifu 100.0 2.1E-35 4.6E-40 274.0 23.5 259 15-333 44-313 (315)
29 PRK10294 6-phosphofructokinase 100.0 1.6E-35 3.5E-40 274.2 22.6 267 3-331 18-301 (309)
30 PF00294 PfkB: pfkB family car 100.0 3.8E-36 8.1E-41 276.8 17.3 259 13-327 30-301 (301)
31 TIGR03168 1-PFK hexose kinase, 100.0 2.6E-35 5.7E-40 272.0 22.9 266 3-331 15-296 (303)
32 cd01943 MAK32 MAK32 kinase. M 100.0 2E-35 4.3E-40 275.5 22.2 262 3-320 9-304 (328)
33 cd01172 RfaE_like RfaE encodes 100.0 4.8E-35 1E-39 270.2 24.2 250 16-323 37-297 (304)
34 cd01164 FruK_PfkB_like 1-phosp 100.0 9.3E-35 2E-39 266.6 24.2 257 2-320 15-288 (289)
35 PRK13508 tagatose-6-phosphate 100.0 5.1E-35 1.1E-39 270.9 22.4 266 3-331 16-298 (309)
36 cd01947 Guanosine_kinase_like 100.0 2.3E-34 4.9E-39 260.7 24.8 243 3-320 15-264 (265)
37 cd01941 YeiC_kinase_like YeiC- 100.0 1.5E-34 3.3E-39 264.7 23.4 259 3-317 15-288 (288)
38 PRK09513 fruK 1-phosphofructok 100.0 1.5E-34 3.4E-39 268.0 23.4 268 2-332 18-301 (312)
39 COG1105 FruK Fructose-1-phosph 100.0 1.1E-33 2.4E-38 254.3 23.1 254 16-331 33-298 (310)
40 TIGR01231 lacC tagatose-6-phos 100.0 7.2E-34 1.6E-38 263.2 22.6 254 16-331 32-298 (309)
41 PRK09813 fructoselysine 6-kina 100.0 2.2E-33 4.7E-38 253.8 24.5 246 3-320 10-259 (260)
42 PRK11316 bifunctional heptose 100.0 8.2E-32 1.8E-36 263.4 22.0 254 16-331 48-309 (473)
43 cd01946 ribokinase_group_C Rib 100.0 1.5E-31 3.2E-36 243.9 21.6 253 4-321 10-276 (277)
44 KOG2854 Possible pfkB family c 100.0 7.2E-31 1.6E-35 233.3 18.5 261 13-329 57-341 (343)
45 cd01937 ribokinase_group_D Rib 100.0 3.5E-30 7.6E-35 231.9 22.4 237 4-316 10-254 (254)
46 PLN02630 pfkB-type carbohydrat 100.0 2.8E-30 6.2E-35 240.2 21.2 238 4-321 22-278 (335)
47 KOG2947 Carbohydrate kinase [C 100.0 4.1E-29 8.8E-34 212.1 19.9 263 1-320 18-298 (308)
48 COG2870 RfaE ADP-heptose synth 99.9 3.1E-26 6.6E-31 208.0 19.0 266 3-331 32-308 (467)
49 cd00287 ribokinase_pfkB_like r 99.9 1.7E-22 3.6E-27 174.3 15.5 166 3-295 15-196 (196)
50 cd01173 pyridoxal_pyridoxamine 99.6 1.6E-15 3.5E-20 136.5 12.7 149 113-316 71-250 (254)
51 PRK12413 phosphomethylpyrimidi 99.6 1.7E-14 3.6E-19 129.9 15.3 214 35-317 3-242 (253)
52 PRK05756 pyridoxamine kinase; 99.6 2.9E-14 6.2E-19 130.7 13.6 151 112-317 72-255 (286)
53 PRK12412 pyridoxal kinase; Rev 99.6 4.6E-14 9.9E-19 128.1 14.0 155 109-317 65-246 (268)
54 TIGR00687 pyridox_kin pyridoxa 99.6 2.9E-14 6.4E-19 130.6 12.7 198 49-315 19-254 (286)
55 PRK07105 pyridoxamine kinase; 99.6 1.9E-14 4.1E-19 131.7 11.0 166 114-333 75-270 (284)
56 cd01169 HMPP_kinase 4-amino-5- 99.6 7.6E-14 1.6E-18 124.7 14.3 149 114-316 68-240 (242)
57 TIGR00097 HMP-P_kinase phospho 99.6 6.9E-14 1.5E-18 126.0 13.8 150 114-317 67-240 (254)
58 PRK08573 phosphomethylpyrimidi 99.5 1.5E-13 3.2E-18 133.3 16.1 149 116-317 73-244 (448)
59 PRK06427 bifunctional hydroxy- 99.5 2.3E-13 5E-18 123.4 13.4 151 114-318 73-249 (266)
60 PRK08176 pdxK pyridoxal-pyrido 99.5 1.9E-13 4E-18 124.9 12.9 150 113-317 87-266 (281)
61 PRK12616 pyridoxal kinase; Rev 99.4 2.2E-12 4.8E-17 117.1 13.2 150 114-317 74-249 (270)
62 PTZ00344 pyridoxal kinase; Pro 99.4 5.9E-12 1.3E-16 115.9 14.0 172 96-317 55-258 (296)
63 KOG3009 Predicted carbohydrate 99.4 9.6E-12 2.1E-16 115.3 13.3 207 16-318 374-601 (614)
64 cd01171 YXKO-related B.subtili 99.3 7.7E-11 1.7E-15 106.1 12.8 153 110-318 73-236 (254)
65 PTZ00347 phosphomethylpyrimidi 99.2 6.4E-11 1.4E-15 116.8 12.5 163 100-317 284-478 (504)
66 PLN02898 HMP-P kinase/thiamin- 99.2 1.3E-10 2.9E-15 114.5 13.5 157 108-318 70-254 (502)
67 TIGR00196 yjeF_cterm yjeF C-te 99.1 1.1E-09 2.5E-14 99.5 11.9 153 108-318 86-251 (272)
68 PRK09517 multifunctional thiam 99.0 9.4E-10 2E-14 113.1 10.8 156 108-317 302-484 (755)
69 PRK14713 multifunctional hydro 99.0 2.5E-09 5.4E-14 106.1 12.6 209 32-309 26-264 (530)
70 PLN02978 pyridoxal kinase 99.0 6.3E-09 1.4E-13 96.3 14.0 156 115-317 87-267 (308)
71 PF08543 Phos_pyr_kin: Phospho 99.0 2.1E-09 4.6E-14 96.3 9.6 150 114-316 60-233 (246)
72 COG0351 ThiD Hydroxymethylpyri 98.9 1.3E-08 2.8E-13 90.2 11.8 218 36-316 4-244 (263)
73 cd01170 THZ_kinase 4-methyl-5- 98.9 1.4E-08 3.1E-13 90.6 12.3 152 108-315 43-220 (242)
74 COG2240 PdxK Pyridoxal/pyridox 98.9 1.9E-07 4E-12 83.4 17.5 207 38-316 11-249 (281)
75 PRK09355 hydroxyethylthiazole 98.6 1.4E-06 3E-11 78.8 14.3 162 96-315 38-224 (263)
76 PTZ00493 phosphomethylpyrimidi 98.5 1E-06 2.3E-11 81.2 11.0 233 36-317 5-285 (321)
77 TIGR00694 thiM hydroxyethylthi 98.4 4.5E-06 9.8E-11 74.9 12.1 158 96-311 33-215 (249)
78 PRK14039 ADP-dependent glucoki 97.5 0.0087 1.9E-07 57.6 17.8 189 14-209 86-338 (453)
79 TIGR02045 P_fruct_ADP ADP-spec 97.2 0.043 9.3E-07 52.8 18.8 99 108-208 203-338 (446)
80 PRK03979 ADP-specific phosphof 97.1 0.021 4.6E-07 55.2 15.2 65 110-174 218-305 (463)
81 KOG2598 Phosphomethylpyrimidin 97.0 0.0095 2.1E-07 56.1 11.8 169 108-317 84-283 (523)
82 KOG2599 Pyridoxal/pyridoxine/p 97.0 0.0073 1.6E-07 53.5 10.4 89 113-203 80-191 (308)
83 PRK10565 putative carbohydrate 96.5 0.054 1.2E-06 53.7 13.7 146 108-310 314-468 (508)
84 PF02110 HK: Hydroxyethylthiaz 96.5 0.026 5.6E-07 50.2 10.1 97 108-206 43-164 (246)
85 PF01256 Carb_kinase: Carbohyd 96.4 0.022 4.8E-07 50.8 9.3 146 108-310 61-215 (242)
86 COG2145 ThiM Hydroxyethylthiaz 96.3 0.076 1.7E-06 47.1 11.7 67 109-175 50-129 (265)
87 PF04587 ADP_PFK_GK: ADP-speci 95.9 0.11 2.4E-06 50.6 11.9 152 17-174 93-291 (444)
88 PRK14038 ADP-dependent glucoki 94.7 0.6 1.3E-05 45.2 12.3 99 108-208 218-348 (453)
89 cd01938 ADPGK_ADPPFK ADP-depen 91.6 0.88 1.9E-05 44.2 8.4 152 14-174 101-285 (445)
90 KOG3974 Predicted sugar kinase 90.4 3.9 8.5E-05 36.5 10.3 70 107-176 94-174 (306)
91 COG0063 Predicted sugar kinase 88.6 4.4 9.5E-05 37.0 9.8 65 111-175 98-168 (284)
92 COG0626 MetC Cystathionine bet 69.0 19 0.00042 34.5 7.3 52 13-65 80-133 (396)
93 COG2518 Pcm Protein-L-isoaspar 68.0 32 0.0007 29.8 7.8 97 8-142 70-166 (209)
94 KOG4184 Predicted sugar kinase 64.0 19 0.00041 33.7 5.8 150 12-173 136-315 (478)
95 cd00757 ThiF_MoeB_HesA_family 59.7 1.2E+02 0.0026 26.5 10.2 36 109-144 106-141 (228)
96 cd01483 E1_enzyme_family Super 53.2 1.1E+02 0.0025 24.2 9.5 35 110-144 85-119 (143)
97 KOG0053 Cystathionine beta-lya 52.5 30 0.00065 33.2 5.4 38 129-166 182-220 (409)
98 COG2873 MET17 O-acetylhomoseri 51.1 43 0.00092 31.8 6.0 109 27-166 95-205 (426)
99 TIGR02355 moeB molybdopterin s 49.9 1.8E+02 0.004 25.7 10.1 38 108-145 108-145 (240)
100 PRK06702 O-acetylhomoserine am 49.9 80 0.0017 30.7 8.0 39 128-166 166-205 (432)
101 COG4809 Archaeal ADP-dependent 49.8 1.1E+02 0.0025 29.2 8.5 68 108-175 219-308 (466)
102 PF10087 DUF2325: Uncharacteri 49.0 85 0.0018 23.3 6.5 49 109-157 43-93 (97)
103 PF03808 Glyco_tran_WecB: Glyc 48.9 97 0.0021 25.8 7.5 71 126-202 35-111 (172)
104 PHA00438 hypothetical protein 44.9 17 0.00037 26.0 1.9 20 276-295 43-62 (81)
105 COG1646 Predicted phosphate-bi 43.6 66 0.0014 28.4 5.7 60 112-175 39-106 (240)
106 PRK10076 pyruvate formate lyas 42.8 92 0.002 27.1 6.6 64 114-177 38-112 (213)
107 TIGR00696 wecB_tagA_cpsF bacte 42.8 1.4E+02 0.0031 25.1 7.6 69 126-201 35-109 (177)
108 PRK15116 sulfur acceptor prote 42.0 1.9E+02 0.0042 26.1 8.7 34 113-146 120-153 (268)
109 PF10911 DUF2717: Protein of u 41.3 20 0.00044 25.5 1.8 18 278-295 45-62 (77)
110 PF00070 Pyr_redox: Pyridine n 37.2 1.5E+02 0.0031 20.8 6.1 44 21-64 10-59 (80)
111 COG0269 SgbH 3-hexulose-6-phos 36.4 2.9E+02 0.0064 24.1 9.3 56 112-167 78-138 (217)
112 COG1433 Uncharacterized conser 35.6 46 0.001 26.2 3.2 43 17-64 49-91 (121)
113 PRK13018 cell division protein 35.1 2.3E+02 0.005 27.1 8.4 130 16-168 34-183 (378)
114 PRK08114 cystathionine beta-ly 35.0 1.3E+02 0.0027 29.0 6.8 50 16-65 82-132 (395)
115 PRK00278 trpC indole-3-glycero 34.3 3.4E+02 0.0074 24.3 9.9 62 110-171 129-192 (260)
116 PRK04169 geranylgeranylglycery 33.6 1.4E+02 0.0031 26.4 6.3 83 84-175 7-96 (232)
117 PRK05967 cystathionine beta-ly 33.3 1E+02 0.0023 29.6 5.9 33 114-146 149-186 (395)
118 cd00755 YgdL_like Family of ac 32.7 3.3E+02 0.0072 24.0 8.6 34 113-146 101-134 (231)
119 PF11469 Ribonucleas_3_2: Ribo 32.6 60 0.0013 24.7 3.2 30 277-306 53-83 (120)
120 PRK05690 molybdopterin biosynt 32.4 3.6E+02 0.0077 23.9 10.2 36 109-144 117-152 (245)
121 COG0036 Rpe Pentose-5-phosphat 31.7 1E+02 0.0023 27.0 5.0 58 113-170 83-145 (220)
122 cd00562 NifX_NifB This CD repr 31.3 82 0.0018 23.1 4.0 39 20-63 48-86 (102)
123 COG1921 SelA Selenocysteine sy 30.8 61 0.0013 31.0 3.7 42 129-170 177-224 (395)
124 COG1922 WecG Teichoic acid bio 30.7 3.2E+02 0.007 24.5 8.1 88 108-201 58-170 (253)
125 PRK07582 cystathionine gamma-l 30.2 2.6E+02 0.0056 26.3 8.0 18 129-146 152-169 (366)
126 PF01053 Cys_Met_Meta_PP: Cys/ 30.2 50 0.0011 31.6 3.1 36 129-164 160-197 (386)
127 COG0075 Serine-pyruvate aminot 29.8 4.6E+02 0.01 25.1 9.5 102 16-146 61-168 (383)
128 PRK09330 cell division protein 29.7 4.8E+02 0.01 25.0 9.6 127 16-165 19-165 (384)
129 PF01113 DapB_N: Dihydrodipico 28.8 1.1E+02 0.0023 23.9 4.4 55 108-163 61-119 (124)
130 COG1180 PflA Pyruvate-formate 28.4 4.3E+02 0.0094 23.6 9.9 65 114-178 83-158 (260)
131 TIGR02356 adenyl_thiF thiazole 28.3 3.7E+02 0.0081 22.9 10.7 35 109-143 106-140 (202)
132 PRK08745 ribulose-phosphate 3- 26.4 1.7E+02 0.0036 25.7 5.5 52 113-164 84-137 (223)
133 TIGR02990 ectoine_eutA ectoine 26.1 3.7E+02 0.0079 23.8 7.7 99 25-143 111-210 (239)
134 KOG0174 20S proteasome, regula 26.0 45 0.00097 28.5 1.7 68 255-322 121-190 (224)
135 KOG1145 Mitochondrial translat 25.6 5.5E+02 0.012 26.1 9.2 106 32-146 149-260 (683)
136 PRK08005 epimerase; Validated 25.6 1.8E+02 0.0039 25.3 5.5 51 113-163 80-132 (210)
137 PRK08883 ribulose-phosphate 3- 25.4 1.9E+02 0.0041 25.3 5.7 52 113-164 80-133 (220)
138 COG1618 Predicted nucleotide k 25.2 4.2E+02 0.009 22.3 11.3 123 42-164 16-157 (179)
139 PF02659 DUF204: Domain of unk 24.6 1.6E+02 0.0034 20.1 4.2 13 284-296 4-16 (67)
140 TIGR00065 ftsZ cell division p 24.5 3.2E+02 0.007 25.7 7.4 133 16-168 23-172 (349)
141 cd02016 TPP_E1_OGDC_like Thiam 24.4 5.3E+02 0.012 23.3 9.2 109 25-147 125-244 (265)
142 PRK09028 cystathionine beta-ly 23.7 2.4E+02 0.0052 27.1 6.5 34 113-146 145-183 (394)
143 PF09314 DUF1972: Domain of un 22.1 4.4E+02 0.0096 22.4 7.1 33 114-146 92-125 (185)
144 COG0241 HisB Histidinol phosph 21.5 2.2E+02 0.0047 24.2 5.1 51 23-73 37-98 (181)
145 COG0169 AroE Shikimate 5-dehyd 21.3 3.1E+02 0.0067 25.1 6.4 45 14-60 130-175 (283)
146 TIGR00334 5S_RNA_mat_M5 ribonu 21.2 2.1E+02 0.0046 24.1 4.9 58 114-171 22-85 (174)
147 PRK06901 aspartate-semialdehyd 21.1 3E+02 0.0065 25.7 6.3 80 46-146 13-94 (322)
148 PF00899 ThiF: ThiF family; I 20.7 1.8E+02 0.004 22.7 4.4 36 108-143 86-121 (135)
No 1
>PRK11142 ribokinase; Provisional
Probab=100.00 E-value=9.1e-41 Score=308.74 Aligned_cols=273 Identities=24% Similarity=0.343 Sum_probs=224.0
Q ss_pred CCCCCCCCCCceE-----EecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEE
Q 046789 3 SDPLPPLPENRIV-----VQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTY 77 (336)
Q Consensus 3 ~~~~~p~~~~~~~-----~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~ 77 (336)
.++.+|.+++.++ ..+||++.|+|.+|++||.++.++|.+|+|.+|+.+++.|++.||+++++...++.+|+.++
T Consensus 18 ~~~~~p~~~~~~~~~~~~~~~GG~~~Nva~~la~lG~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~i~~~~~~~t~~~~ 97 (306)
T PRK11142 18 NLESFPRPGETLTGRHYQVAFGGKGANQAVAAARLGADIAFIACVGDDSIGESMRQQLAKDGIDTAPVSVIKGESTGVAL 97 (306)
T ss_pred EeCCCCCCCCeeEeccceecCCCcHHHHHHHHHhcCCcEEEEEEECCChhHHHHHHHHHHcCCChhhEEEcCCCCCCEEE
Confidence 4677788887764 78999999999999999999999999999999999999999999999999877888899999
Q ss_pred EEEcCCCCeeEEEecCCC-CCCCCcccchhhHhhhccCCcEEEEcCCcH-HHHHHHHHHHHhCCCcEEEeCCcchHhHHH
Q 046789 78 VIVDNQMKTRTCIHTPGD-PPMIPDDLSESTIFSALDGARILYLDGRLP-DTAIIVAQEAARKNIPILIDTERQRERIDE 155 (336)
Q Consensus 78 ~~~~~~g~~~~~~~~~~~-~~~~~e~~~~~~~~~~l~~~~~i~~~~~~~-~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~ 155 (336)
++++.+|.+ +.+...+. ..+++++++. +.+.+..++++|+++..+ +....+++.++++++++++|+.........
T Consensus 98 ~~~~~~g~r-~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~~ 174 (306)
T PRK11142 98 IFVNDEGEN-SIGIHAGANAALTPALVEA--HRELIANADALLMQLETPLETVLAAAKIAKQHGTKVILNPAPARELPDE 174 (306)
T ss_pred EEECCCCCE-EEEEeCCccccCCHHHHHH--HHhhhccCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEEECCCCcccCHH
Confidence 988876554 44444443 3566665543 345689999999997765 667789999999999999999643344467
Q ss_pred hhhcCcEEecCcccchhhcCCCC----hHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHh
Q 046789 156 FLKLASYAVCSAKFPQVWTEAPS----VPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLK 231 (336)
Q Consensus 156 ~l~~~dil~~n~~e~~~l~~~~~----~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (336)
+++++|++++|++|+..+++... ....+.+.+.. .+++.+|+|+|++|++++.++...
T Consensus 175 ~~~~~dil~~n~~Ea~~l~g~~~~~~~~~~~~~~~l~~-~g~~~vvvt~G~~G~~~~~~~~~~----------------- 236 (306)
T PRK11142 175 LLALVDIITPNETEAEKLTGIRVEDDDDAAKAAQVLHQ-KGIETVLITLGSRGVWLSENGEGQ----------------- 236 (306)
T ss_pred HHhhCCEEcCCHHHHHHHhCCCCCChHHHHHHHHHHHH-hCCCeEEEEECCCcEEEEeCCcce-----------------
Confidence 88999999999999998887531 12234455544 389999999999999987655432
Q ss_pred hhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHH
Q 046789 232 QRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVA 311 (336)
Q Consensus 232 ~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~A 311 (336)
++| + ++.+++|||||||+|.|||++++++|+++++|+++|+++|
T Consensus 237 -------~~~--------------------------~---~~v~vvDt~GAGDaF~Agfi~~l~~g~~~~~al~~a~~~A 280 (306)
T PRK11142 237 -------RVP--------------------------G---FRVQAVDTIAAGDTFNGALVTALLEGKPLPEAIRFAHAAA 280 (306)
T ss_pred -------ecc--------------------------C---CCcccccCCCchhHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 444 4 5678999999999999999999999999999999999999
Q ss_pred HhhccccCCccCCCCCCCccc
Q 046789 312 AAGCRALGARTSLPHRTDPRL 332 (336)
Q Consensus 312 a~~~~~~g~~~~~p~~~e~~~ 332 (336)
+.+|++.|+.+.+|+++++++
T Consensus 281 a~~~~~~G~~~~~~~~~~~~~ 301 (306)
T PRK11142 281 AIAVTRKGAQPSIPWREEIDA 301 (306)
T ss_pred HHHcCCCcccccCCCHHHHHH
Confidence 999999999877898888753
No 2
>PTZ00292 ribokinase; Provisional
Probab=100.00 E-value=6.6e-40 Score=305.79 Aligned_cols=275 Identities=22% Similarity=0.351 Sum_probs=224.5
Q ss_pred CCCCCCCCCCceE-----EecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEE
Q 046789 3 SDPLPPLPENRIV-----VQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTY 77 (336)
Q Consensus 3 ~~~~~p~~~~~~~-----~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~ 77 (336)
.+|++|.+++.++ ..+||++.|+|.+|++||.++.++|.+|+|.+|+.+++.|++.||+++++...++.+|+.++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~la~lG~~~~~is~vG~D~~g~~i~~~l~~~GI~~~~~~~~~~~~t~~~~ 110 (326)
T PTZ00292 31 YVDRMPQVGETLHGTSFHKGFGGKGANQAVMASKLGAKVAMVGMVGTDGFGSDTIKNFKRNGVNTSFVSRTENSSTGLAM 110 (326)
T ss_pred ecCCCCCCCCceeecCceeCCCCcHHHHHHHHHHcCCCeEEEEEECCChhHHHHHHHHHHcCCChhhEEEcCCCCCcEEE
Confidence 4678888888764 68999999999999999999999999999999999999999999999999777788899999
Q ss_pred EEEc-CCCCeeEEEecCCC-CCCCCcccchhhHhhhccC-CcEEEEcCCcH-HHHHHHHHHHHhCCCcEEEeCCcch---
Q 046789 78 VIVD-NQMKTRTCIHTPGD-PPMIPDDLSESTIFSALDG-ARILYLDGRLP-DTAIIVAQEAARKNIPILIDTERQR--- 150 (336)
Q Consensus 78 ~~~~-~~g~~~~~~~~~~~-~~~~~e~~~~~~~~~~l~~-~~~i~~~~~~~-~~~~~~~~~a~~~~~~v~~d~~~~~--- 150 (336)
++++ .+| .++.+..++. ..+++++++. ....+.. ++++++++..+ +...++++.+++.++++++|+....
T Consensus 111 ~~~~~~~g-~~~~~~~~g~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~ 187 (326)
T PTZ00292 111 IFVDTKTG-NNEIVIIPGANNALTPQMVDA--QTDNIQNICKYLICQNEIPLETTLDALKEAKERGCYTVFNPAPAPKLA 187 (326)
T ss_pred EEEeCCCC-ceEEEEeCCccccCCHHHHHH--HHHHhhhhCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEECCCCcccc
Confidence 9988 554 4555554553 3666666553 2344666 99999987654 7778899999999999999995221
Q ss_pred --HhHHHhhhcCcEEecCcccchhhcCCCC--h--HHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhh
Q 046789 151 --ERIDEFLKLASYAVCSAKFPQVWTEAPS--V--PSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVD 224 (336)
Q Consensus 151 --~~~~~~l~~~dil~~n~~e~~~l~~~~~--~--~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~ 224 (336)
+.+..+++++|++++|++|+..+++... . ...+.+.+.. .+++.+|+|+|++|++++..+...
T Consensus 188 ~~~~~~~~l~~~dii~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~-~g~~~vvvT~G~~Ga~~~~~~~~~---------- 256 (326)
T PTZ00292 188 EVEIIKPFLKYVSLFCVNEVEAALITGMEVTDTESAFKASKELQQ-LGVENVIITLGANGCLIVEKENEP---------- 256 (326)
T ss_pred ccccHHHHHhcCCEEcCCHHHHHHHhCCCCCChhHHHHHHHHHHH-cCCCeEEEEeCCCcEEEEeCCCce----------
Confidence 4678889999999999999998887531 1 1233444444 388999999999999998755331
Q ss_pred HHHHHHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHH
Q 046789 225 SLLEQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKML 304 (336)
Q Consensus 225 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al 304 (336)
.++| + ++.+++|||||||+|.|||++++++|+++++|+
T Consensus 257 -------------~~~~--------------------------~---~~~~vvDttGAGDaF~ag~l~~l~~g~~~~~al 294 (326)
T PTZ00292 257 -------------VHVP--------------------------G---KRVKAVDTTGAGDCFVGSMAYFMSRGKDLKESC 294 (326)
T ss_pred -------------EEcc--------------------------C---CccccCCCcchHHHHHHHHHHHHHCCCCHHHHH
Confidence 1344 4 567899999999999999999999999999999
Q ss_pred HHHHHHHHhhccccCCccCCCCCCCcccc
Q 046789 305 PFAAQVAAAGCRALGARTSLPHRTDPRLA 333 (336)
Q Consensus 305 ~~a~~~Aa~~~~~~g~~~~~p~~~e~~~~ 333 (336)
++|+++|++++++.|+..++|+.++++.+
T Consensus 295 ~~a~a~Aa~~v~~~G~~~~~~~~~~~~~~ 323 (326)
T PTZ00292 295 KRANRIAAISVTRHGTQSSYPHPSELPAD 323 (326)
T ss_pred HHHHHHHHHHcCCCCccccCCCHHHHHHH
Confidence 99999999999999999889999988754
No 3
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=100.00 E-value=3e-39 Score=296.45 Aligned_cols=267 Identities=28% Similarity=0.427 Sum_probs=219.3
Q ss_pred CCCCCCCCCCceE-----EecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEE
Q 046789 3 SDPLPPLPENRIV-----VQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTY 77 (336)
Q Consensus 3 ~~~~~p~~~~~~~-----~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~ 77 (336)
.++.+|.+++..+ .++||++.|+|.+|++||.++.++|.+|+|.+|+.+++.|++.||+++++...++.+|+.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~ 94 (292)
T cd01174 15 RVDRLPKPGETVLGSSFETGPGGKGANQAVAAARLGARVAMIGAVGDDAFGDELLENLREEGIDVSYVEVVVGAPTGTAV 94 (292)
T ss_pred EecCCCCCCCcEEeccceecCCCcHHHHHHHHHHcCCceEEEEEEcCCccHHHHHHHHHHcCCCceEEEEcCCCCceeEE
Confidence 3567778877664 78999999999999999999999999999999999999999999999999777788899999
Q ss_pred EEEcCCCCeeEEEecCCCC-CCCCcccchhhHhhhccCCcEEEEcCCcH-HHHHHHHHHHHhCCCcEEEeCCcchHhHHH
Q 046789 78 VIVDNQMKTRTCIHTPGDP-PMIPDDLSESTIFSALDGARILYLDGRLP-DTAIIVAQEAARKNIPILIDTERQRERIDE 155 (336)
Q Consensus 78 ~~~~~~g~~~~~~~~~~~~-~~~~e~~~~~~~~~~l~~~~~i~~~~~~~-~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~ 155 (336)
++++.+|.+ +.+...+.. .+++++++. +.+.++.++++++++..+ +....+++.++++++++++|+.........
T Consensus 95 ~~~~~~g~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~ 171 (292)
T cd01174 95 ITVDESGEN-RIVVVPGANGELTPADVDA--ALELIAAADVLLLQLEIPLETVLAALRAARRAGVTVILNPAPARPLPAE 171 (292)
T ss_pred EEEcCCCce-EEEEeCCCCCCCCHHHHHH--HHHhcccCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEeCCCcCcCcHH
Confidence 998876544 444444432 455555543 445689999999998765 567789999999999999999654444578
Q ss_pred hhhcCcEEecCcccchhhcCCCChH----HHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHh
Q 046789 156 FLKLASYAVCSAKFPQVWTEAPSVP----SALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLK 231 (336)
Q Consensus 156 ~l~~~dil~~n~~e~~~l~~~~~~~----~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (336)
+++++|++++|++|+..+++..... ..+.+.+.. .+++.+|+|+|++|+++++++...
T Consensus 172 ~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~-~g~~~vvvt~G~~G~~~~~~~~~~----------------- 233 (292)
T cd01174 172 LLALVDILVPNETEAALLTGIEVTDEEDAEKAARLLLA-KGVKNVIVTLGAKGALLASGGEVE----------------- 233 (292)
T ss_pred HHhhCCEEeeCHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCCEEEEEeCCCceEEEeCCceE-----------------
Confidence 8899999999999999988764321 234455544 389999999999999998755332
Q ss_pred hhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHH
Q 046789 232 QRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVA 311 (336)
Q Consensus 232 ~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~A 311 (336)
++| + ++.+++||+||||+|+|||++++++|+++++|+++|+++|
T Consensus 234 -------~~~--------------------------~---~~~~~vdt~GaGD~F~ag~l~~l~~g~~~~~al~~a~~~A 277 (292)
T cd01174 234 -------HVP--------------------------A---FKVKAVDTTGAGDTFIGALAAALARGLSLEEAIRFANAAA 277 (292)
T ss_pred -------Eec--------------------------C---CCcccCCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 333 4 5578999999999999999999999999999999999999
Q ss_pred HhhccccCCccCCCC
Q 046789 312 AAGCRALGARTSLPH 326 (336)
Q Consensus 312 a~~~~~~g~~~~~p~ 326 (336)
+.++++.|+...+|+
T Consensus 278 a~~~~~~G~~~~~~~ 292 (292)
T cd01174 278 ALSVTRPGAQPSIPT 292 (292)
T ss_pred HHHhcCcCCCCCCCC
Confidence 999999999988774
No 4
>PLN02967 kinase
Probab=100.00 E-value=4.1e-39 Score=313.70 Aligned_cols=265 Identities=18% Similarity=0.236 Sum_probs=216.0
Q ss_pred eEEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCeeEEEecC
Q 046789 14 IVVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHTP 93 (336)
Q Consensus 14 ~~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~~~~~~ 93 (336)
....+||++.|+|.+|++||.++.|+|.+|+|.+|+.+++.|++.||+++++...++.+|+.+++.++.+|.+++.+..+
T Consensus 238 ~~~~~GGa~aNVAvaLARLG~~v~fIg~VGdD~~G~~ll~~L~~~GVDts~v~~~~~~~Tgla~V~vd~~Gerr~~~~~~ 317 (581)
T PLN02967 238 FVRAPGGSAGGVAIALASLGGKVAFMGKLGDDDYGQAMLYYLNVNKVQTRSVCIDGKRATAVSTMKIAKRGRLKTTCVKP 317 (581)
T ss_pred eeeecCcHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHHHHHHHcCCcccceEecCCCCCcEEEEEECCCCceEEEEecC
Confidence 44789999999999999999999999999999999999999999999999998877888999999999888767665556
Q ss_pred CCC-CCCCcccchhhHhhhccCCcEEEEcCCcH------HHHHHHHHHHHhCCCcEEEeCC---cc-------hHhHHHh
Q 046789 94 GDP-PMIPDDLSESTIFSALDGARILYLDGRLP------DTAIIVAQEAARKNIPILIDTE---RQ-------RERIDEF 156 (336)
Q Consensus 94 ~~~-~~~~e~~~~~~~~~~l~~~~~i~~~~~~~------~~~~~~~~~a~~~~~~v~~d~~---~~-------~~~~~~~ 156 (336)
+++ .+.++++.. ..+..++++|+++... ..+..+++.+++.|++|+||++ .. .+.+..+
T Consensus 318 gAd~~L~~~di~~----~~l~~A~i~hfgg~~ll~e~~~~all~alk~Ak~~Gv~VsFDpNlR~~lw~~~e~~~e~i~el 393 (581)
T PLN02967 318 CAEDSLSKSEINI----DVLKEAKMFYFNTHSLLDPTMRSTTLRAIKISKKLGGVIFYDLNLPLPLWSSSEETKSFIQEA 393 (581)
T ss_pred ChhhhCChhhcCH----hHhcCCCEEEEeCchhcccchHHHHHHHHHHHHHCCCEEEEECCCCcccccchHHHHHHHHHH
Confidence 644 677777764 5678999999988641 5677899999999999999984 21 2346788
Q ss_pred hhcCcEEecCcccchhhcCCCCh----------------HHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhh
Q 046789 157 LKLASYAVCSAKFPQVWTEAPSV----------------PSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEE 220 (336)
Q Consensus 157 l~~~dil~~n~~e~~~l~~~~~~----------------~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~ 220 (336)
++++||+++|++|+..+++..+. .......+.. .+++.||||+|++|++++..+...
T Consensus 394 L~~aDILk~NeeEl~~LtG~~~~~e~~~~~~~~~~~~~~~~e~a~~l~~-~g~k~VVVTlG~~Ga~~~~~~~~~------ 466 (581)
T PLN02967 394 WNLADIIEVTKQELEFLCGIEPTEEFDTKDNDKSKFVHYSPEVVAPLWH-ENLKVLFVTNGTSKIHYYTKEHNG------ 466 (581)
T ss_pred HHhCCEEEECHHHHHHHhCCCccccccccccchhccccchHHHHHHHHh-CCCCEEEEEECccceEEEECCCce------
Confidence 99999999999999999875321 1122333333 389999999999999998764321
Q ss_pred hhhhHHHHHHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCC--ccccCCchhhhHHHHHHHHHhC-
Q 046789 221 IDVDSLLEQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSE--LVDTTGAGDAFIGAVLYALCAN- 297 (336)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--vvd~tGAGDaF~ag~i~~l~~g- 297 (336)
+++ .++.++++ +||||||||+|.|||+++|+++
T Consensus 467 ------------------~v~--------------------------~~~a~~V~V~vVDTTGAGDAF~AGfL~~Ll~g~ 502 (581)
T PLN02967 467 ------------------AVH--------------------------GMEDAPITPFTSDMSASGDGIVAGLMRMLTVQP 502 (581)
T ss_pred ------------------eEe--------------------------eccCCCCCCCCCCCCchhHHHHHHHHHHHHhcc
Confidence 222 11112334 5899999999999999999984
Q ss_pred ------CChhhHHHHHHHHHHhhccccCCccCCCCCCCcccc
Q 046789 298 ------MSPEKMLPFAAQVAAAGCRALGARTSLPHRTDPRLA 333 (336)
Q Consensus 298 ------~~l~~al~~a~~~Aa~~~~~~g~~~~~p~~~e~~~~ 333 (336)
+++++|+++|+++||++|+..|+..++|++++++++
T Consensus 503 ~~~~g~~~LeeaLrfAnAaAAL~vt~~GA~~glPt~~eV~~~ 544 (581)
T PLN02967 503 HLITDKGYLEKTIKYAIDCGVIDQWLLARTRGFPPKEDMEDE 544 (581)
T ss_pred CcccccccHHHHHHHHHHHHHHHhccCCCccCCCCHHHHhhh
Confidence 679999999999999999999999999999998754
No 5
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=100.00 E-value=1.2e-38 Score=291.39 Aligned_cols=262 Identities=41% Similarity=0.591 Sum_probs=215.1
Q ss_pred CCCCCCCCCCceE-----EecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEE
Q 046789 3 SDPLPPLPENRIV-----VQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTY 77 (336)
Q Consensus 3 ~~~~~p~~~~~~~-----~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~ 77 (336)
.++.+|.+++.++ ..+||++.|+|.+|++||.++.++|.+|+|++|+.+++.|++.||+++++...++.+|+.++
T Consensus 15 ~~~~~p~~~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~~~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~~t~~~~ 94 (284)
T cd01945 15 LVASFPGGDGKIVATDYAVIGGGNAANAAVAVARLGGQARLIGVVGDDAIGRLILAELAAEGVDTSFIVVAPGARSPISS 94 (284)
T ss_pred EeccCCCCCCeEEEeEEEEecCCHHHHHHHHHHHcCCCeEEEEEecCchHHHHHHHHHHHcCCCccceeecCCCCCccEE
Confidence 4567788877643 89999999999999999999999999999999999999999999999999887666777766
Q ss_pred EEEcCCCCeeEEEecCCCCCCCCcccchhhHhhhccCCcEEEEcCCcHHHHHHHHHHHHhCCCcEEEeC--CcchHhHHH
Q 046789 78 VIVDNQMKTRTCIHTPGDPPMIPDDLSESTIFSALDGARILYLDGRLPDTAIIVAQEAARKNIPILIDT--ERQRERIDE 155 (336)
Q Consensus 78 ~~~~~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~a~~~~~~v~~d~--~~~~~~~~~ 155 (336)
+ .+.++.++...+......+..++++. ..++.++++|+++..++...++++.+++.+.++++|+ ..... +..
T Consensus 95 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~i~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~-~~~ 168 (284)
T cd01945 95 I-TDITGDRATISITAIDTQAAPDSLPD----AILGGADAVLVDGRQPEAALHLAQEARARGIPIPLDLDGGGLRV-LEE 168 (284)
T ss_pred E-EccCCCceEEEecCCCCCCCcccCCH----HHhCcCCEEEEcCCCHHHHHHHHHHHHHcCCCeeEeccCCcccc-hHH
Confidence 6 44455455554443335667777765 4479999999999999888899999999999766655 33333 678
Q ss_pred hhhcCcEEecCcccchhhcCCCChHHHHHHHHHcCCCCcEEEEeecCCceEEEe-eccCCCCchhhhhhhHHHHHHhhhc
Q 046789 156 FLKLASYAVCSAKFPQVWTEAPSVPSALVSMLLRLPNLRFAIVTLGEDGCIMLE-RSVNESPELEEIDVDSLLEQLKQRK 234 (336)
Q Consensus 156 ~l~~~dil~~n~~e~~~l~~~~~~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (336)
+++++|++++|++|+..+.+.... ++.+.+.. .+++.+|+|+|++|++++. +++..
T Consensus 169 ~~~~~dil~~n~~e~~~l~~~~~~--~~~~~l~~-~~~~~vivt~G~~G~~~~~~~~~~~-------------------- 225 (284)
T cd01945 169 LLPLADHAICSENFLRPNTGSADD--EALELLAS-LGIPFVAVTLGEAGCLWLERDGELF-------------------- 225 (284)
T ss_pred HhccCCEEEeChhHHhhhcCCCHH--HHHHHHHh-cCCcEEEEEECCCCeEEEcCCCCEE--------------------
Confidence 889999999999999988876443 44454544 4899999999999999987 33222
Q ss_pred CCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhh
Q 046789 235 DDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAG 314 (336)
Q Consensus 235 ~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~ 314 (336)
++| + ++.+++||+||||+|+|||+++|++|+++++|+.+|+++|+++
T Consensus 226 ----~~~--------------------------~---~~~~vvDt~GAGDaf~ag~l~~l~~g~~~~~al~~a~~~Aa~~ 272 (284)
T cd01945 226 ----HVP--------------------------A---FPVEVVDTTGAGDVFHGAFAHALAEGMPLREALRFASAAAALK 272 (284)
T ss_pred ----ecC--------------------------C---CccccccCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 444 4 5678999999999999999999999999999999999999999
Q ss_pred ccccCCccCCCC
Q 046789 315 CRALGARTSLPH 326 (336)
Q Consensus 315 ~~~~g~~~~~p~ 326 (336)
|++.|+..++|+
T Consensus 273 ~~~~G~~~~~~~ 284 (284)
T cd01945 273 CRGLGGRAGLPT 284 (284)
T ss_pred HhccCCcccCCC
Confidence 999999888875
No 6
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=100.00 E-value=2.5e-38 Score=290.72 Aligned_cols=272 Identities=25% Similarity=0.408 Sum_probs=223.8
Q ss_pred CCCCCCCCCCceE-----EecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEE
Q 046789 3 SDPLPPLPENRIV-----VQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTY 77 (336)
Q Consensus 3 ~~~~~p~~~~~~~-----~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~ 77 (336)
.++.+|.+++..+ ..+||++.|+|.+|++||.++.+++.+|+|..|+.+++.|++.||+++++...++.+|+.++
T Consensus 10 ~~~~~p~~~~~~~~~~~~~~~GG~~~Nva~~l~~lg~~~~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~ 89 (293)
T TIGR02152 10 RTDRLPKPGETVHGHSFQIGPGGKGANQAVAAARLGAEVSMIGKVGDDAFGDELLENLKSNGIDTEYVGTVKDTPTGTAF 89 (293)
T ss_pred EeCCCCCCCCcEecCCceecCCCcHHHHHHHHHHCCCCEEEEEEecCCccHHHHHHHHHHcCCCeeEEEEcCCCCCceEE
Confidence 4678888888874 89999999999999999999999999999999999999999999999999877777899999
Q ss_pred EEEcCCCCeeEEEecCCC-CCCCCcccchhhHhhhccCCcEEEEcCCcH-HHHHHHHHHHHhCCCcEEEeCCcchH-hHH
Q 046789 78 VIVDNQMKTRTCIHTPGD-PPMIPDDLSESTIFSALDGARILYLDGRLP-DTAIIVAQEAARKNIPILIDTERQRE-RID 154 (336)
Q Consensus 78 ~~~~~~g~~~~~~~~~~~-~~~~~e~~~~~~~~~~l~~~~~i~~~~~~~-~~~~~~~~~a~~~~~~v~~d~~~~~~-~~~ 154 (336)
++++.++.++. +...+. ..+.+++++. +.+.+..++++++++..+ +.+..+++.+++.++++++|+....+ ...
T Consensus 90 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~ 166 (293)
T TIGR02152 90 ITVDDTGENRI-VVVAGANAELTPEDIDA--AEALIAESDIVLLQLEIPLETVLEAAKIAKKHGVKVILNPAPAIKDLDD 166 (293)
T ss_pred EEEcCCCCEEE-EEECCcCCcCCHHHHHH--HHhhhccCCEEEEecCCCHHHHHHHHHHHHHcCCEEEEECCcCcccchH
Confidence 99887655544 444443 3566666654 345678999999987664 66778999999999999999964322 336
Q ss_pred HhhhcCcEEecCcccchhhcCCCC----hHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHH
Q 046789 155 EFLKLASYAVCSAKFPQVWTEAPS----VPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQL 230 (336)
Q Consensus 155 ~~l~~~dil~~n~~e~~~l~~~~~----~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (336)
.+++++|++++|++|+..+++... ..+.+.+.+... +++.+|+|+|++|++++..+...
T Consensus 167 ~~~~~~d~l~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~-g~~~vvvt~G~~g~~~~~~~~~~---------------- 229 (293)
T TIGR02152 167 ELLSLVDIITPNETEAEILTGIEVTDEEDAEKAAEKLLEK-GVKNVIITLGSKGALLVSKDESK---------------- 229 (293)
T ss_pred HHHhcCCEEccCHHHHHHHhCCCCCCcchHHHHHHHHHHc-CCCeEEEEeCCCceEEEeCCcee----------------
Confidence 788999999999999998887531 233455555554 89999999999999998765332
Q ss_pred hhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHH
Q 046789 231 KQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQV 310 (336)
Q Consensus 231 ~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~ 310 (336)
++| + ++.+++||+||||+|+|||++++++|+++++|+++|+++
T Consensus 230 --------~~~--------------------------~---~~~~~vdt~GAGDaf~Ag~l~~l~~g~~~~~al~~a~~~ 272 (293)
T TIGR02152 230 --------LIP--------------------------A---FKVKAVDTTAAGDTFNGAFAVALAEGKSLEDAIRFANAA 272 (293)
T ss_pred --------Ecc--------------------------C---CCCceeCCCCcHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 333 3 566899999999999999999999999999999999999
Q ss_pred HHhhccccCCccCCCCCCCcc
Q 046789 311 AAAGCRALGARTSLPHRTDPR 331 (336)
Q Consensus 311 Aa~~~~~~g~~~~~p~~~e~~ 331 (336)
|+++|++.|+...+|+++++|
T Consensus 273 Aa~~~~~~G~~~~~~~~~~~~ 293 (293)
T TIGR02152 273 AAISVTRKGAQSSIPYLEEVE 293 (293)
T ss_pred HHHHHcccCcccCCCChHHcC
Confidence 999999999988889888775
No 7
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=3.3e-38 Score=306.49 Aligned_cols=274 Identities=22% Similarity=0.298 Sum_probs=216.1
Q ss_pred CCCCCCCCCCCc----------------eEEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccce
Q 046789 2 SSDPLPPLPENR----------------IVVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFL 65 (336)
Q Consensus 2 ~~~~~~p~~~~~----------------~~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i 65 (336)
..+|.+|.+++. ..+..|| +.|+|.++++||.++.++|.+|+|.+|+.+++.|++.||+++++
T Consensus 87 ~~V~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~GG-~~NvAvaLarLG~~v~lig~VG~D~~G~~i~~~L~~~GVd~~~v 165 (470)
T PLN02341 87 LPVPELPPPSREERKAYMEELAASPPDKKSWEAGG-NCNFAIAAARLGLRCSTIGHVGDEIYGKFLLDVLAEEGISVVGL 165 (470)
T ss_pred EecCCCCCCCHHHHHHHHHhhcccccccceecCCh-HHHHHHHHHHcCCCeEEEEEecCcHHHHHHHHHHHHcCCeeeEE
Confidence 357888988853 1245677 78999999999999999999999999999999999999999998
Q ss_pred EEeC--------CCCccEEEEEEcCCCCeeEEEecCCC-CCCCCcccch--hhHhhhccCCcEEEEcCCc-----HHHHH
Q 046789 66 VVSK--------EGNSPFTYVIVDNQMKTRTCIHTPGD-PPMIPDDLSE--STIFSALDGARILYLDGRL-----PDTAI 129 (336)
Q Consensus 66 ~~~~--------~~~t~~~~~~~~~~g~~~~~~~~~~~-~~~~~e~~~~--~~~~~~l~~~~~i~~~~~~-----~~~~~ 129 (336)
...+ ..+|+.++++++.+|. +.++..... .....+++.. ....+.++.++++|++++. ++.+.
T Consensus 166 ~~~~~~~~~~~~~~~T~~~~vlvd~~ge-r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~adiv~lsg~~~~~~~~~~~~ 244 (470)
T PLN02341 166 IEGTDAGDSSSASYETLLCWVLVDPLQR-HGFCSRADFGPEPAFSWISKLSAEAKMAIRQSKALFCNGYVFDELSPSAIA 244 (470)
T ss_pred EecCccccccccCCCceeEEEEEcCCCC-ceeeeccccccccchhhhhcccHHHHhhhhcCCEEEEeceeCCcCCHHHHH
Confidence 6544 3568899999987664 433322211 1111111111 2234568999999999863 46677
Q ss_pred HHHHHHHhCCCcEEEeCCcc-----------hHhHHHhhhcCcEEecCcccchhhcCCCChHHHHHHHHHcC-CCCcEEE
Q 046789 130 IVAQEAARKNIPILIDTERQ-----------RERIDEFLKLASYAVCSAKFPQVWTEAPSVPSALVSMLLRL-PNLRFAI 197 (336)
Q Consensus 130 ~~~~~a~~~~~~v~~d~~~~-----------~~~~~~~l~~~dil~~n~~e~~~l~~~~~~~~~~~~~l~~~-~~~~~vv 197 (336)
.+++.+++.++++++|+... ++.+..+++++|++++|++|+..+++..+..+ +++.+... .+.+.||
T Consensus 245 ~~~~~Ak~~g~~V~~Dp~~~~~~~~~~~~~~~~~l~~~L~~~Dil~~Ne~Ea~~l~g~~~~~~-a~~~l~~~g~~~k~VV 323 (470)
T PLN02341 245 SAVDYAIDVGTAVFFDPGPRGKSLLVGTPDERRALEHLLRMSDVLLLTSEEAEALTGIRNPIL-AGQELLRPGIRTKWVV 323 (470)
T ss_pred HHHHHHHHcCCEEEEeCCCcccccccChHHHHHHHHHHHhhCCEEEecHHHHHHHhCCCCHHH-HHHHHHhcCCCCCEEE
Confidence 89999999999999999532 24577899999999999999999998765444 44444332 1258999
Q ss_pred EeecCCceEEEeeccCCCCchhhhhhhHHHHHHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCcc
Q 046789 198 VTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELV 277 (336)
Q Consensus 198 vt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vv 277 (336)
||+|++|++++.++... ++| + ++++++
T Consensus 324 VTlG~~Ga~~~~~~~~~------------------------~vp--------------------------a---~~v~vV 350 (470)
T PLN02341 324 VKMGSKGSILVTRSSVS------------------------CAP--------------------------A---FKVNVV 350 (470)
T ss_pred EeeCCCCeEEEECCeeE------------------------EeC--------------------------C---CCcCCC
Confidence 99999999998866443 444 4 677899
Q ss_pred ccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhccccCCccCCCCCCCcc
Q 046789 278 DTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRALGARTSLPHRTDPR 331 (336)
Q Consensus 278 d~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~~~~g~~~~~p~~~e~~ 331 (336)
|||||||+|.|||++++++|+++++|+++|+++|+++|+..|+..++|++++++
T Consensus 351 DTtGAGDaF~Agfl~gll~G~~l~eal~~A~a~aA~~v~~~Ga~~~~p~~~ev~ 404 (470)
T PLN02341 351 DTVGCGDSFAAAIALGYIHNLPLVNTLTLANAVGAATAMGCGAGRNVATLEKVL 404 (470)
T ss_pred CCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcCCCCCCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999998875
No 8
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=100.00 E-value=6.5e-38 Score=287.69 Aligned_cols=263 Identities=25% Similarity=0.354 Sum_probs=205.4
Q ss_pred CCCCCCCCCCCceE-----EecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEE
Q 046789 2 SSDPLPPLPENRIV-----VQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFT 76 (336)
Q Consensus 2 ~~~~~~p~~~~~~~-----~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~ 76 (336)
..++.+|.+++..+ ..+||++.|+|.++++||.++.++|.+|+|++|+.+++.|++.||+++++...++..++.+
T Consensus 14 ~~v~~~p~~~~~~~~~~~~~~~GG~a~NvA~~la~lG~~~~~~~~vG~D~~g~~~~~~l~~~gId~~~~~~~~~~~~~~~ 93 (290)
T cd01939 14 TTVDKYPFEDSDQRTTNGRWQRGGNASNSCTVLRLLGLSCEFLGVLSRGPVFESLLDDFQSRGIDISHCYRKDIDEPASS 93 (290)
T ss_pred eeecCCCCCCcceEeeeeeEecCCCHHHHHHHHHHcCCceEEEEeecCCHHHHHHHHHHHHcCCceeeeeEcCCCCCeeE
Confidence 35677888887544 7899999999999999999999999999999999999999999999999865555555656
Q ss_pred EEEEcCCCCeeEEEecCCCCCCCCcccchhhHhhhccCCcEEEEcCCcHHHHHHHHHHHHhCC-------CcEEEeCCcc
Q 046789 77 YVIVDNQMKTRTCIHTPGDPPMIPDDLSESTIFSALDGARILYLDGRLPDTAIIVAQEAARKN-------IPILIDTERQ 149 (336)
Q Consensus 77 ~~~~~~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~a~~~~-------~~v~~d~~~~ 149 (336)
+++.+.+|.+++.........++.+++.. ..++.++++|++++.|....++++.+++.+ +++++|+...
T Consensus 94 ~~~~~~~g~r~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~ 169 (290)
T cd01939 94 YIIRSRAGGRTTIVNDNNLPEVTYDDFSK----IDLTQYGWIHFEGRNPDETLRMMQHIEEHNNRRPEIRITISVEVEKP 169 (290)
T ss_pred EEEEcCCCCeEEEEeCCCCCCCCHHHHhh----hhhccCCEEEEeccCHHHHHHHHHHHHHhcCcCCCcceEEEEEeccC
Confidence 77777665554554444334666665554 335899999999999977778888887766 6788898644
Q ss_pred hHhHHHhhhcCcEEecCcccchhhcCCCChHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHH
Q 046789 150 RERIDEFLKLASYAVCSAKFPQVWTEAPSVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQ 229 (336)
Q Consensus 150 ~~~~~~~l~~~dil~~n~~e~~~l~~~~~~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (336)
.+.+..+++++|++++|++|+..+ +..+..+.+...+....+++.+|+|+|++|++++.++...
T Consensus 170 ~~~~~~~l~~~di~~~n~~~~~~~-~~~~~~~~~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~--------------- 233 (290)
T cd01939 170 REELLELAAYCDVVFVSKDWAQSR-GYKSPEECLRGEGPRAKKAALLVCTWGDQGAGALGPDGEY--------------- 233 (290)
T ss_pred chhhhhHHhhCCEEEEEhHHHHhc-CcCCHHHHHHhhhhhccCCcEEEEEcccCCeEEEcCCCCE---------------
Confidence 556678999999999999988764 5444444333322233478999999999999988754322
Q ss_pred HhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCC-hhhHHHHHH
Q 046789 230 LKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMS-PEKMLPFAA 308 (336)
Q Consensus 230 ~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~-l~~al~~a~ 308 (336)
.++| ++ ++.+++|||||||+|.|||++++++|++ +++|+++|+
T Consensus 234 --------~~~~--------------------------~~--~~~~vvDt~GAGDsf~agfl~~l~~g~~~~~~a~~~a~ 277 (290)
T cd01939 234 --------VHSP--------------------------AH--KPIRVVDTLGAGDTFNAAVIYALNKGPDDLSEALDFGN 277 (290)
T ss_pred --------EEec--------------------------CC--CCCCcccCCCchHHHHHHHHHHHHcCCccHHHHHHHHH
Confidence 1344 42 3456899999999999999999999995 999999999
Q ss_pred HHHHhhccccCC
Q 046789 309 QVAAAGCRALGA 320 (336)
Q Consensus 309 ~~Aa~~~~~~g~ 320 (336)
++|++++++.|.
T Consensus 278 a~aa~~i~~~G~ 289 (290)
T cd01939 278 RVASQKCTGVGF 289 (290)
T ss_pred HHHHHHHhhhcC
Confidence 999999999874
No 9
>PLN02323 probable fructokinase
Probab=100.00 E-value=7.9e-38 Score=292.25 Aligned_cols=259 Identities=23% Similarity=0.308 Sum_probs=211.6
Q ss_pred EEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCeeEEEec-C
Q 046789 15 VVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHT-P 93 (336)
Q Consensus 15 ~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~~~~~-~ 93 (336)
...+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++.||+++++.+.++.+|+.+++.++.+|.+.+.++. .
T Consensus 39 ~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g~~i~~~L~~~GI~~~~v~~~~~~~t~~~~i~~~~~g~r~~~~~~~~ 118 (330)
T PLN02323 39 KKAPGGAPANVAVGISRLGGSSAFIGKVGDDEFGHMLADILKKNGVNNEGVRFDPGARTALAFVTLRSDGEREFMFYRNP 118 (330)
T ss_pred eecCCChHHHHHHHHHhcCCceeEEEEecCChhHHHHHHHHHHcCCCCcceEEcCCCCceEEEEEECCCCceeEEeecCC
Confidence 488999999999999999999999999999999999999999999999999887778899999988877655554443 3
Q ss_pred CC-CCCCCcccchhhHhhhccCCcEEEEcCCcH------HHHHHHHHHHHhCCCcEEEeCCc----------chHhHHHh
Q 046789 94 GD-PPMIPDDLSESTIFSALDGARILYLDGRLP------DTAIIVAQEAARKNIPILIDTER----------QRERIDEF 156 (336)
Q Consensus 94 ~~-~~~~~e~~~~~~~~~~l~~~~~i~~~~~~~------~~~~~~~~~a~~~~~~v~~d~~~----------~~~~~~~~ 156 (336)
+. ..+++++++. +.++.++++|+++... .....+++.+++.++++++|+.. .++.+..+
T Consensus 119 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ 194 (330)
T PLN02323 119 SADMLLRESELDL----DLIRKAKIFHYGSISLITEPCRSAHLAAMKIAKEAGALLSYDPNLRLPLWPSAEAAREGIMSI 194 (330)
T ss_pred chhccCChHHCCh----HHHccCCEEEEechhccCchHHHHHHHHHHHHHHcCCEEEEcCCCChhhccCHHHHHHHHHHH
Confidence 32 2567777764 4578899998876531 34567888999999999999941 22446678
Q ss_pred hhcCcEEecCcccchhhcCCCChH-HHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhhhcC
Q 046789 157 LKLASYAVCSAKFPQVWTEAPSVP-SALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKD 235 (336)
Q Consensus 157 l~~~dil~~n~~e~~~l~~~~~~~-~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (336)
++++|++++|++|+..+++..... +.+...+. .+.+.+|+|+|++|++++.+++..
T Consensus 195 l~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~--~g~~~vvvt~G~~G~~~~~~~~~~--------------------- 251 (330)
T PLN02323 195 WDEADIIKVSDEEVEFLTGGDDPDDDTVVKLWH--PNLKLLLVTEGEEGCRYYTKDFKG--------------------- 251 (330)
T ss_pred HHhCCEEEcCHHHHHHHhCCCCccHHHHHHHHh--cCCCEEEEecCCCceEEEeCCCce---------------------
Confidence 899999999999999988765432 23333333 489999999999999998765432
Q ss_pred CCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCC-------hhhHHHHHH
Q 046789 236 DRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMS-------PEKMLPFAA 308 (336)
Q Consensus 236 ~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~-------l~~al~~a~ 308 (336)
++| + ++.+++|||||||+|.|||++++++|++ +++|+++|+
T Consensus 252 ---~~~--------------------------~---~~v~vvDttGAGDaf~Agfl~~l~~g~~~~~~~~~l~~al~~a~ 299 (330)
T PLN02323 252 ---RVE--------------------------G---FKVKAVDTTGAGDAFVGGLLSQLAKDLSLLEDEERLREALRFAN 299 (330)
T ss_pred ---EeC--------------------------C---ccCCCCCCCCcHHHHHHHHHHHHHcCCccccchHHHHHHHHHHH
Confidence 444 4 4568899999999999999999999986 899999999
Q ss_pred HHHHhhccccCCccCCCCCCCccc
Q 046789 309 QVAAAGCRALGARTSLPHRTDPRL 332 (336)
Q Consensus 309 ~~Aa~~~~~~g~~~~~p~~~e~~~ 332 (336)
++|+++|++.|+...+|+++++++
T Consensus 300 a~Aa~~v~~~g~~~~~~~~~~v~~ 323 (330)
T PLN02323 300 ACGAITTTERGAIPALPTKEAVLK 323 (330)
T ss_pred HHHHHHHhccCCccCCCCHHHHHH
Confidence 999999999999888899988753
No 10
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=100.00 E-value=1.8e-37 Score=286.52 Aligned_cols=269 Identities=26% Similarity=0.337 Sum_probs=216.3
Q ss_pred CCCCCCCCCCceEEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcC
Q 046789 3 SDPLPPLPENRIVVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDN 82 (336)
Q Consensus 3 ~~~~~p~~~~~~~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~ 82 (336)
.+|.+|.+++.....+||++.|+|.++++||.++.+++.+|+|.+|+.+++.|++.||+++++...++.+|+.+++.++.
T Consensus 12 ~iD~~~~~~~~~~~~~GG~~~N~a~~l~~LG~~~~~v~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~~t~~~~i~~~~ 91 (304)
T PRK09434 12 VVDLIPEGENRYLKCPGGAPANVAVGIARLGGESGFIGRVGDDPFGRFMQQTLQDEGVDTTYLRLDPAHRTSTVVVDLDD 91 (304)
T ss_pred heeeecCCCCceeeCCCChHHHHHHHHHHcCCCceEEEEecCchHHHHHHHHHHHcCCCCcceEEcCCCCceEEEEEECC
Confidence 45667776666778899999999999999999999999999999999999999999999999887778889999988876
Q ss_pred CCCeeEEEe-cCCCC-CCCCcccchhhHhhhccCCcEEEEcCCc------HHHHHHHHHHHHhCCCcEEEeCCc------
Q 046789 83 QMKTRTCIH-TPGDP-PMIPDDLSESTIFSALDGARILYLDGRL------PDTAIIVAQEAARKNIPILIDTER------ 148 (336)
Q Consensus 83 ~g~~~~~~~-~~~~~-~~~~e~~~~~~~~~~l~~~~~i~~~~~~------~~~~~~~~~~a~~~~~~v~~d~~~------ 148 (336)
+|.+.+.+. .+++. .+..++++. +..++++|+++.. .....++++.++++++++++|+..
T Consensus 92 ~g~r~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~ 165 (304)
T PRK09434 92 QGERSFTFMVRPSADLFLQPQDLPP------FRQGEWLHLCSIALSAEPSRSTTFEAMRRIKAAGGFVSFDPNLREDLWQ 165 (304)
T ss_pred CCCEeEEEecCCchhhhCCHHHhhh------hcCCCEEEEccccccCchHHHHHHHHHHHHHHcCCEEEECCCCChhhcc
Confidence 554444333 23322 334444432 6779999998753 145568889999999999999941
Q ss_pred ----chHhHHHhhhcCcEEecCcccchhhcCCCChHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhh
Q 046789 149 ----QRERIDEFLKLASYAVCSAKFPQVWTEAPSVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVD 224 (336)
Q Consensus 149 ----~~~~~~~~l~~~dil~~n~~e~~~l~~~~~~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~ 224 (336)
.++.+.++++++|++++|++|+..+++..+. +.+++.+....+.+.+|+|+|++|++++.+++..
T Consensus 166 ~~~~~~~~~~~~l~~~dil~~n~~e~~~l~g~~~~-~~~~~~l~~~~g~~~vvvt~G~~G~~~~~~~~~~---------- 234 (304)
T PRK09434 166 DEAELRECLRQALALADVVKLSEEELCFLSGTSQL-EDAIYALADRYPIALLLVTLGAEGVLVHTRGQVQ---------- 234 (304)
T ss_pred CHHHHHHHHHHHHHhcceeeCCHHHHHHHhCCCCH-HHHHHHHHhhcCCcEEEEEecCCceEEEeCCcee----------
Confidence 1344567789999999999999999886544 3445555443478999999999999998755432
Q ss_pred HHHHHHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCC------
Q 046789 225 SLLEQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANM------ 298 (336)
Q Consensus 225 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~------ 298 (336)
++| + ++.+++|||||||+|+|||+++|++|+
T Consensus 235 --------------~~~--------------------------~---~~~~~vDttGAGD~f~ag~~~~l~~g~~~~~~~ 271 (304)
T PRK09434 235 --------------HFP--------------------------A---PSVDPVDTTGAGDAFVAGLLAGLSQAGLWTDEA 271 (304)
T ss_pred --------------EeC--------------------------C---CCCCCCcCCCchHHHHHHHHHHHHcCCCccchH
Confidence 444 4 567889999999999999999999997
Q ss_pred ChhhHHHHHHHHHHhhccccCCccCCCCCCCcc
Q 046789 299 SPEKMLPFAAQVAAAGCRALGARTSLPHRTDPR 331 (336)
Q Consensus 299 ~l~~al~~a~~~Aa~~~~~~g~~~~~p~~~e~~ 331 (336)
++++|+++|+++|+++|++.|+...+|++++++
T Consensus 272 ~~~~a~~~a~~~Aa~~v~~~g~~~~~~~~~~~~ 304 (304)
T PRK09434 272 ELAEIIAQAQACGALATTAKGAMTALPNRQELE 304 (304)
T ss_pred HHHHHHHHHHHHHHHHHcccCCcCCCCChHHcC
Confidence 899999999999999999999998899888764
No 11
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=1.6e-37 Score=299.78 Aligned_cols=265 Identities=18% Similarity=0.232 Sum_probs=209.7
Q ss_pred eEEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEc-CCCCeeEEE-e
Q 046789 14 IVVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVD-NQMKTRTCI-H 91 (336)
Q Consensus 14 ~~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~-~~g~~~~~~-~ 91 (336)
....+||++.|+|.++++||.++.++|.||+|.+|+.+++.|++.||+++++...++.+|+.+++.++ .++++++.+ +
T Consensus 167 f~~~~GGa~aNVAvaLARLG~~vafIG~VGdD~fG~~l~~~L~~~GVDts~v~~~~~~~Tgla~V~v~~~~~gr~~~~~~ 246 (496)
T PLN02543 167 FARAPGGPPSNVAISHVRLGGRAAFMGKVGDDDFGEELVLMMNKERVQTRAVKFDENAKTACSRMKIKFRDGGKMVAETV 246 (496)
T ss_pred eEeccCcHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHHHHHHHcCCcccceEecCCCCCceEEEEEEeCCCCCEEEEec
Confidence 34789999999999999999999999999999999999999999999999998888888999998874 233455543 4
Q ss_pred cCCC-CCCCCcccchhhHhhhccCCcEEEEcCCc---H---HHHHHHHHHHHhCCCcEEEeCC---cc-------hHhHH
Q 046789 92 TPGD-PPMIPDDLSESTIFSALDGARILYLDGRL---P---DTAIIVAQEAARKNIPILIDTE---RQ-------RERID 154 (336)
Q Consensus 92 ~~~~-~~~~~e~~~~~~~~~~l~~~~~i~~~~~~---~---~~~~~~~~~a~~~~~~v~~d~~---~~-------~~~~~ 154 (336)
..++ ..+.+++++. ..++.++++|+++.. + +....+++.+++.|++|+||++ .. .+.+.
T Consensus 247 ~~gA~~~L~~~di~~----~~l~~a~ilh~~~~~l~~~~~~~a~~~al~~Ak~~G~~VsfDpN~R~~LW~~~~~~~~~i~ 322 (496)
T PLN02543 247 KEAAEDSLLASELNL----AVLKEARMFHFNSEVLTSPSMQSTLFRAIELSKKFGGLIFFDLNLPLPLWRSRDETRELIK 322 (496)
T ss_pred CCCHHHhCChhhcCH----hHhCCCceEEECChhhcCchHHHHHHHHHHHHHHCCCEEEEeCCCCccccCCHHHHHHHHH
Confidence 4443 3677777775 567899999999875 2 5677899999999999999995 11 23466
Q ss_pred HhhhcCcEEecCcccchhhcCCCC----------------------------hHHHHHHHHHcCCCCcEEEEeecCCceE
Q 046789 155 EFLKLASYAVCSAKFPQVWTEAPS----------------------------VPSALVSMLLRLPNLRFAIVTLGEDGCI 206 (336)
Q Consensus 155 ~~l~~~dil~~n~~e~~~l~~~~~----------------------------~~~~~~~~l~~~~~~~~vvvt~G~~G~~ 206 (336)
.+++++|++++|++|+..+++... ..+.+...+. .+++.||||+|.+|++
T Consensus 323 ~~l~~aDIl~~SeeEa~~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~g~~~VVVT~G~~Ga~ 400 (496)
T PLN02543 323 KAWNEADIIEVSRQELEFLLDEDYYERKRNYPPQYYAESFEQTKNWRDYYHYTPEEIAPLWH--DGLKLLLVTDGTLRIH 400 (496)
T ss_pred HHHHhCCEEEecHHHHHHHhCCCcccccccccchhhhhhhhhhhcccccccCCHHHHHHHHH--CCCCEEEEEcCCCcEE
Confidence 788999999999999999887530 1233433333 3899999999999999
Q ss_pred EEeeccCCCCchhhhhhhHHHHHHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhh
Q 046789 207 MLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAF 286 (336)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF 286 (336)
+++++... .++. +. ...+++ .+||||||||+|
T Consensus 401 ~~t~~~~g------------------------~v~~---------------------~~--~~~v~~-~~VDTTGAGDAF 432 (496)
T PLN02543 401 YYTPKFDG------------------------VVVG---------------------TE--DVLITP-FTCDRTGSGDAV 432 (496)
T ss_pred EEECCCcc------------------------cccc---------------------cc--cccCCC-CCcCCCchHHHH
Confidence 98754221 1110 00 000012 248999999999
Q ss_pred HHHHHHHHHh-------CCChhhHHHHHHHHHHhhccccCCccCCCCCCCccc
Q 046789 287 IGAVLYALCA-------NMSPEKMLPFAAQVAAAGCRALGARTSLPHRTDPRL 332 (336)
Q Consensus 287 ~ag~i~~l~~-------g~~l~~al~~a~~~Aa~~~~~~g~~~~~p~~~e~~~ 332 (336)
.|||+++|++ ++++++|+++|+++|+++|++.|+.+++|+++|+++
T Consensus 433 ~AGfL~~Ll~~~~~~~~g~~l~ealrfAnAaaAl~vt~~GA~~~lPt~~ev~~ 485 (496)
T PLN02543 433 VAAIMRKLTTCPEMFEDQDVLERQLRFAVAAGIISQWTIGAVRGFPTESATQN 485 (496)
T ss_pred HHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHH
Confidence 9999999985 678999999999999999999999999999999874
No 12
>PLN02813 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=7.4e-38 Score=300.14 Aligned_cols=256 Identities=25% Similarity=0.327 Sum_probs=208.3
Q ss_pred EEecCCchHHHHHHHHHcC--------CCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCe
Q 046789 15 VVQGGGNAGNALTCAARLG--------LNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKT 86 (336)
Q Consensus 15 ~~~~GG~a~n~a~~l~~LG--------~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~ 86 (336)
...+||++.|+|.++++|| .+|.++|.+|+|.+|+.+++.|++.||++..+.+ .+.+|+.++++++.+|.
T Consensus 122 ~~~~GG~~~N~AvalarLG~~~~~~~~~~v~~ig~VG~D~~G~~i~~~L~~~GVd~~~~~~-~~~~Tg~~~ilv~~~ge- 199 (426)
T PLN02813 122 KASAGGSLSNTLVALARLGSQSAAGPALNVAMAGSVGSDPLGDFYRTKLRRANVHFLSQPV-KDGTTGTVIVLTTPDAQ- 199 (426)
T ss_pred eEecCcHHHHHHHHHHHhccccccCCCCcEEEEEEeCCChHHHHHHHHHHHcCCcccceec-CCCCceEEEEEEcCCCC-
Confidence 3889999999999999999 7999999999999999999999999999988765 45679999998887654
Q ss_pred eEEEecCCCC-CCCCcccchhhHhhhccCCcEEEEcCCc---H---HHHHHHHHHHHhCCCcEEEeCCcc------hHh-
Q 046789 87 RTCIHTPGDP-PMIPDDLSESTIFSALDGARILYLDGRL---P---DTAIIVAQEAARKNIPILIDTERQ------RER- 152 (336)
Q Consensus 87 ~~~~~~~~~~-~~~~e~~~~~~~~~~l~~~~~i~~~~~~---~---~~~~~~~~~a~~~~~~v~~d~~~~------~~~- 152 (336)
|+++...+++ .+.++++. .+.++.++++|++++. + +...++++.+++.++++++|+... ++.
T Consensus 200 rtii~~~Ga~~~l~~~~~~----~~~i~~adiv~l~g~~~~~~~~~~~~~~~~~~ak~~g~~v~~d~s~~~~~~~~~~~l 275 (426)
T PLN02813 200 RTMLSYQGTSSTVNYDSCL----ASAISKSRVLVVEGYLWELPQTIEAIAQACEEAHRAGALVAVTASDVSCIERHRDDF 275 (426)
T ss_pred ceeeeccCchhhCCccccC----HHHHhcCCEEEEEeeecCCCchHHHHHHHHHHHHHcCCEEEEECCCcchhhhhHHHH
Confidence 5555555543 55555443 3568999999998853 3 456788899999999999987431 223
Q ss_pred HHHhhhcCcEEecCcccchhhcCCC--ChHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHH
Q 046789 153 IDEFLKLASYAVCSAKFPQVWTEAP--SVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQL 230 (336)
Q Consensus 153 ~~~~l~~~dil~~n~~e~~~l~~~~--~~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (336)
...+++++|++++|++|+..+++.. +..+.+.+.+.. +.+.+|+|+|++|+++..+++..
T Consensus 276 ~~~ll~~vDil~~Ne~Ea~~l~g~~~~~~~~~a~~~L~~--~~~~VVVT~G~~Ga~~~~~~~~~---------------- 337 (426)
T PLN02813 276 WDVMGNYADILFANSDEARALCGLGSEESPESATRYLSH--FCPLVSVTDGARGSYIGVKGEAV---------------- 337 (426)
T ss_pred HHHHHhcCCEEEeCHHHHHHHhCCCCCCCHHHHHHHHHc--CCCEEEEEeCCCCeEEEECCEEE----------------
Confidence 3445689999999999999988752 234455666654 78999999999999887655432
Q ss_pred hhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCC-ChhhHHHHHHH
Q 046789 231 KQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANM-SPEKMLPFAAQ 309 (336)
Q Consensus 231 ~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~-~l~~al~~a~~ 309 (336)
++| + +++++||||||||+|.|||++++++|+ ++++|+++|++
T Consensus 338 --------~~p--------------------------a---~~v~vVDTtGAGDAF~Agfl~~l~~G~~~l~~al~~A~a 380 (426)
T PLN02813 338 --------YIP--------------------------P---SPCVPVDTCGAGDAYAAGILYGLLRGVSDLRGMGELAAR 380 (426)
T ss_pred --------EeC--------------------------C---CCCCcccCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 444 5 467899999999999999999999999 99999999999
Q ss_pred HHHhhccccCCccCCCCCCCcc
Q 046789 310 VAAAGCRALGARTSLPHRTDPR 331 (336)
Q Consensus 310 ~Aa~~~~~~g~~~~~p~~~e~~ 331 (336)
+|+.+|++.|+..++|+.+++.
T Consensus 381 ~Aa~~v~~~Ga~~~~~~~~e~~ 402 (426)
T PLN02813 381 VAATVVGQQGTRLRVEDAVELA 402 (426)
T ss_pred HHHHHHcccCCCcCHHHHHHHH
Confidence 9999999999998888877765
No 13
>PRK09850 pseudouridine kinase; Provisional
Probab=100.00 E-value=2.3e-37 Score=287.02 Aligned_cols=262 Identities=15% Similarity=0.178 Sum_probs=208.3
Q ss_pred eEEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCeeEEEecC
Q 046789 14 IVVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHTP 93 (336)
Q Consensus 14 ~~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~~~~~~ 93 (336)
.+..+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++.||+++++...++.+|+.++++++.+|.+.+.+..+
T Consensus 35 ~~~~~GG~~~NvA~~l~~lG~~~~~ig~vG~D~~g~~i~~~l~~~gVd~~~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~ 114 (313)
T PRK09850 35 IKFTPGGVGRNIAQNLALLGNKAWLLSAVGSDFYGQSLLTQTNQSGVYVDKCLIVPGENTSSYLSLLDNTGEMLVAINDM 114 (313)
T ss_pred EEEeCCcHHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHHHcCCCchheeecCCCCceEEEEEecCCCCEEEEecCc
Confidence 44889999999999999999999999999999999999999999999999987767778999999998776555555433
Q ss_pred CC-CCCCCcccchhhHhhhccCCcEEEEcCCcHH-HHHHHHHHHHhCCCcEEEeCCcch--HhHHHhhhcCcEEecCccc
Q 046789 94 GD-PPMIPDDLSESTIFSALDGARILYLDGRLPD-TAIIVAQEAARKNIPILIDTERQR--ERIDEFLKLASYAVCSAKF 169 (336)
Q Consensus 94 ~~-~~~~~e~~~~~~~~~~l~~~~~i~~~~~~~~-~~~~~~~~a~~~~~~v~~d~~~~~--~~~~~~l~~~dil~~n~~e 169 (336)
+. ..+.++.+.. ..+.++.++++++++..+. ....+++.+ +++++++|+...+ ..+.++++++|++++|++|
T Consensus 115 ~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~g~~v~~D~~~~~~~~~~~~~l~~~dil~~N~~E 190 (313)
T PRK09850 115 NISNAITAEYLAQ--HREFIQRAKVIVADCNISEEALAWILDNA--ANVPVFVDPVSAWKCVKVRDRLNQIHTLKPNRLE 190 (313)
T ss_pred hHhhhCCHHHHHH--HHHHHhcCCEEEEeCCCCHHHHHHHHHhc--cCCCEEEEcCCHHHHHHHHhhhccceEEccCHHH
Confidence 32 2344333332 2355789999999887664 444455543 5889999996432 3467788999999999999
Q ss_pred chhhcCCC----ChHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhhhcCCCCCCccccc
Q 046789 170 PQVWTEAP----SVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVPTCIS 245 (336)
Q Consensus 170 ~~~l~~~~----~~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~ 245 (336)
+..+++.. ...+.+++.+.. .+++.+|+|+|++|++++.++... .++|
T Consensus 191 a~~l~g~~~~~~~~~~~~~~~l~~-~g~~~vvvT~G~~G~~~~~~~~~~-----------------------~~~~---- 242 (313)
T PRK09850 191 AETLSGIALSGREDVAKVAAWFHQ-HGLNRLVLSMGGDGVYYSDISGES-----------------------GWSA---- 242 (313)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHH-cCCCEEEEEeCCceEEEEcCCCCe-----------------------EecC----
Confidence 99888742 223445555544 488999999999999998754321 1333
Q ss_pred hhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhccccCCccCCC
Q 046789 246 SLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRALGARTSLP 325 (336)
Q Consensus 246 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~~~~g~~~~~p 325 (336)
+ ++.++||||||||+|+|||++++++|+++++|+++|+++|+.+++..+.....|
T Consensus 243 ----------------------~---~~~~vvDttGAGDaF~agfi~~l~~g~~~~eal~~a~a~aa~~~~~~~~~~~~~ 297 (313)
T PRK09850 243 ----------------------P---IKTNVINVTGAGDAMMAGLASCWVDGMPFAESVRFAQGCSSMALSCEYTNNPDL 297 (313)
T ss_pred ----------------------C---CCcccccCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCCccc
Confidence 4 467899999999999999999999999999999999999999999999999999
Q ss_pred CCCCccc
Q 046789 326 HRTDPRL 332 (336)
Q Consensus 326 ~~~e~~~ 332 (336)
+.++|+.
T Consensus 298 ~~~~~~~ 304 (313)
T PRK09850 298 SIANVIS 304 (313)
T ss_pred CHHHHHH
Confidence 9998873
No 14
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.
Probab=100.00 E-value=3.6e-37 Score=285.58 Aligned_cols=248 Identities=31% Similarity=0.456 Sum_probs=205.0
Q ss_pred eEEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCeeEEEecC
Q 046789 14 IVVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHTP 93 (336)
Q Consensus 14 ~~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~~~~~~ 93 (336)
.+..+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++.||+++++.. .+.+|+.++++++.+| .|+.+..+
T Consensus 50 ~~~~~GG~~~N~A~~la~LG~~~~~i~~vG~D~~g~~i~~~l~~~GV~~~~~~~-~~~~t~~~~~~~~~~g-~r~~~~~~ 127 (312)
T cd01168 50 VKYIAGGSAANTIRGAAALGGSAAFIGRVGDDKLGDFLLKDLRAAGVDTRYQVQ-PDGPTGTCAVLVTPDA-ERTMCTYL 127 (312)
T ss_pred ccccCCCHHHHHHHHHHHhcCCeEEEEEeccChhHHHHHHHHHHCCCccccccC-CCCCceEEEEEEcCCC-ceeeeccc
Confidence 457899999999999999999999999999999999999999999999998875 4578999999988665 44555555
Q ss_pred CC-CCCCCcccchhhHhhhccCCcEEEEcCCc----HHHHHHHHHHHHhCCCcEEEeCCc------chHhHHHhhhcCcE
Q 046789 94 GD-PPMIPDDLSESTIFSALDGARILYLDGRL----PDTAIIVAQEAARKNIPILIDTER------QRERIDEFLKLASY 162 (336)
Q Consensus 94 ~~-~~~~~e~~~~~~~~~~l~~~~~i~~~~~~----~~~~~~~~~~a~~~~~~v~~d~~~------~~~~~~~~l~~~di 162 (336)
+. ..++++++.. +.++.++++|+++.. ++....+++.+++.++++++|+.. .++.+..+++++|+
T Consensus 128 ~~~~~~~~~~~~~----~~l~~~~~v~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~~~~~~~~~l~~~d~ 203 (312)
T cd01168 128 GAANELSPDDLDW----SLLAKAKYLYLEGYLLTVPPEAILLAAEHAKENGVKIALNLSAPFIVQRFKEALLELLPYVDI 203 (312)
T ss_pred chhhcCChhHCCH----HHHccCCEEEEEEEecCCCHHHHHHHHHHHHHcCCEEEEeCCcHHHHHHHHHHHHHHHhhCCE
Confidence 43 4777777764 568999999998863 377778999999999999999953 12346788899999
Q ss_pred EecCcccchhhcCC--CChHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhhhcCCCCCC
Q 046789 163 AVCSAKFPQVWTEA--PSVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAV 240 (336)
Q Consensus 163 l~~n~~e~~~l~~~--~~~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 240 (336)
+++|++|+..+++. ....+ .++.+... +++.+|+|+|++|++++..+... ++
T Consensus 204 l~~n~~E~~~l~~~~~~~~~~-~a~~l~~~-g~~~vvvt~G~~G~~~~~~~~~~------------------------~~ 257 (312)
T cd01168 204 LFGNEEEAEALAEAETTDDLE-AALKLLAL-RCRIVVITQGAKGAVVVEGGEVY------------------------PV 257 (312)
T ss_pred EEeCHHHHHHHhCCCCCChHH-HHHHHHhc-CCCEEEEecCCCCeEEEECCEEE------------------------eC
Confidence 99999999999874 33333 34444443 89999999999999998755332 44
Q ss_pred ccccchhhhhhhccCcccccceeeecccccCCC-CCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhccccC
Q 046789 241 PTCISSLETRLRAEGIGTVSGRLYIGTAEKIPP-SELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRALG 319 (336)
Q Consensus 241 p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~~~~g 319 (336)
| + ++ .+++|||||||+|+|||++++++|+++++|+++|+++|+++|++.|
T Consensus 258 ~--------------------------~---~~~~~vvDttGAGDaf~ag~l~~l~~g~~~~~a~~~a~~~Aa~~v~~~G 308 (312)
T cd01168 258 P--------------------------A---IPVEKIVDTNGAGDAFAGGFLYGLVQGEPLEECIRLGSYAAAEVIQQLG 308 (312)
T ss_pred C--------------------------C---CCCCCcccCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccC
Confidence 4 4 34 7899999999999999999999999999999999999999999999
Q ss_pred Ccc
Q 046789 320 ART 322 (336)
Q Consensus 320 ~~~ 322 (336)
+..
T Consensus 309 ~~~ 311 (312)
T cd01168 309 PRL 311 (312)
T ss_pred CCC
Confidence 753
No 15
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.5e-37 Score=283.30 Aligned_cols=273 Identities=29% Similarity=0.415 Sum_probs=223.1
Q ss_pred CCCCCCCCCce-----EEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEE
Q 046789 4 DPLPPLPENRI-----VVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYV 78 (336)
Q Consensus 4 ~~~~p~~~~~~-----~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~ 78 (336)
++.+|.++... ...+||++.|+|+++++||.++.++|.+|+|.+|+.+++.|++.||+++++......+|+.+++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~GG~~~N~A~~~a~lG~~~~~~~~vG~D~~g~~~~~~l~~~GVd~~~~~~~~~~~tg~~~i 96 (311)
T COG0524 17 VDRLPEPGETVLGDFFKVAGGGKGANVAVALARLGAKVALIGAVGDDDFGEFLLEELRKEGVDTSHVVTDEGATTGLALI 96 (311)
T ss_pred ccCCCCCcccccccceeecCCchHHHHHHHHHHcCCceEEEEEecCcHHHHHHHHHHHHcCCccceEEEcCCCcceEEEE
Confidence 45566666554 3678888999999999999999999999999999999999999999999998877778899999
Q ss_pred EEcCCCCeeEEEecCCC-CCCCCcccchhhHhhhccCCcEEEEcCCcH----HHHHHHHHHHHhCCCcEEEeCCcc----
Q 046789 79 IVDNQMKTRTCIHTPGD-PPMIPDDLSESTIFSALDGARILYLDGRLP----DTAIIVAQEAARKNIPILIDTERQ---- 149 (336)
Q Consensus 79 ~~~~~g~~~~~~~~~~~-~~~~~e~~~~~~~~~~l~~~~~i~~~~~~~----~~~~~~~~~a~~~~~~v~~d~~~~---- 149 (336)
.++.+|.+.+.++..++ ..+.+++++. ..+..++++|+++..+ +....+++.+++.+.++++|++..
T Consensus 97 ~~~~~g~r~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~g~~v~~d~~~~~~~~ 172 (311)
T COG0524 97 LVDEDGERTFVFYRGAAALLLTPEDLDE----DELAGADVLHISGIQLEIPPEALLAALELAKAAGVTVSFDLNPRPALW 172 (311)
T ss_pred EEcCCCceeEEEECCcccccCChHHcCh----HHHhhcCeeeEEEeecCCChHHHHHHHHHHHHcCCeEEEecCCCcccc
Confidence 99887544444444432 3566666664 5678999999988754 678899999999999999999532
Q ss_pred -hHhHHHhhhcCcEEecCcccchhhcCC-CChHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHH
Q 046789 150 -RERIDEFLKLASYAVCSAKFPQVWTEA-PSVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLL 227 (336)
Q Consensus 150 -~~~~~~~l~~~dil~~n~~e~~~l~~~-~~~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~ 227 (336)
.+.+..+++++|++++|++|+..+.+. ....+.. ..+ ..++++.+|+|+|++|+.+++.+...
T Consensus 173 ~~~~~~~~l~~~d~~~~n~~E~~~l~g~~~~~~~~~-~~~-~~~~~~~vvvt~G~~Ga~~~~~~~~~------------- 237 (311)
T COG0524 173 DRELLEELLALADILFPNEEEAELLTGLEEDAEAAA-ALL-LAKGVKTVVVTLGAEGAVVFTGGGEV------------- 237 (311)
T ss_pred chhhHHHHHhhCCEEeCCHHHHHHHhCCCccHHHHH-HHH-hhcCCCEEEEEeCCCcEEEEeCCCce-------------
Confidence 256788999999999999999999885 3333222 333 34599999999999999999875421
Q ss_pred HHHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHH
Q 046789 228 EQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFA 307 (336)
Q Consensus 228 ~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a 307 (336)
.+| ..+.+++++||||||||+|.|||++++++|+++++|+++|
T Consensus 238 -----------~~~--------------------------~~~~~~~~vvDttGAGDaF~agfl~~~~~g~~~~~a~~~a 280 (311)
T COG0524 238 -----------TVP--------------------------VPAAFKVKVVDTTGAGDAFAAGFLAGLLEGKSLEEALRFA 280 (311)
T ss_pred -----------eec--------------------------cCCCCccccccCCCchHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 222 2333788899999999999999999999999999999999
Q ss_pred HHHHHhhccccCCccCCCCCCCccc
Q 046789 308 AQVAAAGCRALGARTSLPHRTDPRL 332 (336)
Q Consensus 308 ~~~Aa~~~~~~g~~~~~p~~~e~~~ 332 (336)
+++|+++++..|+...+|+.++++.
T Consensus 281 ~a~aa~~~~~~g~~~~~p~~~~~~~ 305 (311)
T COG0524 281 NAAAALAVTRPGARPSLPTREEVEA 305 (311)
T ss_pred HHHhhhhhccCCCCCCCCCHHHHHH
Confidence 9999999999999998999888653
No 16
>PRK15074 inosine/guanosine kinase; Provisional
Probab=100.00 E-value=1.9e-36 Score=288.93 Aligned_cols=290 Identities=18% Similarity=0.238 Sum_probs=215.8
Q ss_pred EEecCCchHHHHHHHHHcC-CCceEEEeecCC-hhhHHHHHHHH--HcCCcccceEEeCCCCccEEEEEEcCCCCeeEEE
Q 046789 15 VVQGGGNAGNALTCAARLG-LNPRIISKIADD-PQGKGIREEFE--ADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCI 90 (336)
Q Consensus 15 ~~~~GG~a~n~a~~l~~LG-~~v~~i~~vG~D-~~g~~i~~~l~--~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~~~ 90 (336)
...+||++.|+|.++++|| .++.++|.+|+| .+|+.+++.|+ +.||+++++.. .+.+|+.++++++.+|.+.+..
T Consensus 88 ~~~~GGsaaNtA~~lArLGG~~~~fig~VGdDd~~G~~~~~~L~~~~~GVdt~~v~~-~~~~TG~~~VlV~~dGeRt~~t 166 (434)
T PRK15074 88 HEFAGGTIGNTLHNYSVLADDRSVLLGVMSSNIEIGSYAYRYLCNTSSRTDLNYLQG-VDGPIGRCFTLISEDGERTFAI 166 (434)
T ss_pred cccCCCHHHHHHHHHHHcCCCCeEEEEEeCCCHHHHHHHHHHhhhhhCCccCcceEE-cCCCCEEEEEEECCCCCEEEEE
Confidence 3569999999999999996 999999999999 79999999997 68999999865 4467999999998776554444
Q ss_pred ecCCCCCCCCcccchhhHhhhccCCcEEEEcCCc---------HHHHHHHHHHHHhCCCcEEEeCCcc------hHhH-H
Q 046789 91 HTPGDPPMIPDDLSESTIFSALDGARILYLDGRL---------PDTAIIVAQEAARKNIPILIDTERQ------RERI-D 154 (336)
Q Consensus 91 ~~~~~~~~~~e~~~~~~~~~~l~~~~~i~~~~~~---------~~~~~~~~~~a~~~~~~v~~d~~~~------~~~~-~ 154 (336)
+...+..+++++++. ..++.++++|++++. ++....+++.|++.+++|++|+... ++.+ .
T Consensus 167 ~~GA~~~Lt~edld~----~~i~~a~ilyl~Gy~l~~~~~~~~~~a~~~al~~Ake~G~~VslD~s~~~~v~~~~~~~~e 242 (434)
T PRK15074 167 SPGHMNQLRPESIPE----DVIAGASALVLTAYLVRCKPGEPMPEATMKAIEYAKKHNVPVVLTLGTKFVIEDNPQWWQE 242 (434)
T ss_pred ecChhhcCChhHCCH----hHhccCCEEEEeeeehhcccCCCcHHHHHHHHHHHHHcCCEEEEECcchhhccccHHHHHH
Confidence 443334888888875 568999999998864 4667789999999999999999643 2233 3
Q ss_pred HhhhcCcEEecCcccchhhcCCCChHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCC----Cc------hhhhhhh
Q 046789 155 EFLKLASYAVCSAKFPQVWTEAPSVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNES----PE------LEEIDVD 224 (336)
Q Consensus 155 ~~l~~~dil~~n~~e~~~l~~~~~~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~----~~------~~~~~~~ 224 (336)
.+++++|++++|++|+..+++..+. +.++..+.. ..+.||||+|++|+++...++... .. ..+.+.+
T Consensus 243 ~l~~~vDILf~NeeEa~~LtG~~d~-eea~~~L~~--~~~~VVVTlG~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (434)
T PRK15074 243 FLKEHVSILAMNEDEAEALTGESDP-LLASDKALD--WVDLVLCTAGPIGLYMAGYTEDEAKRETQHPLLPGAIAEFNRY 319 (434)
T ss_pred HHHhcCCEEEcCHHHHHHHhCCCCH-HHHHHHHHc--CCCEEEEEECCCCEEEEecccccccCceeeeccccccccccch
Confidence 4557999999999999999986544 445555554 579999999999999975433210 00 0122334
Q ss_pred HHHHHHhhhcCCCCCCccccchhhhhhhccCcccccceeeec-ccccCCCCCccccCCchhhhHHHHHHHHHhCC-----
Q 046789 225 SLLEQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIG-TAEKIPPSELVDTTGAGDAFIGAVLYALCANM----- 298 (336)
Q Consensus 225 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~----- 298 (336)
++....+++.- . +.++.|.. +++...++++||||||||+|.|||+|+|++|+
T Consensus 320 ~~~~~~~~~~~---~-------------------~~~~~~~~~~~~~~~~~~~vDttGAGD~f~~gfl~~l~~g~~~~~~ 377 (434)
T PRK15074 320 EFSRAMRKKDC---Q-------------------NPLRVYSHIAPYMGGPEKIMNTNGAGDGALSALLHDITANSYHRSN 377 (434)
T ss_pred hcccchhcccc---c-------------------cccccccccCcccCCCCcceeCCCcHHHHHHHHHHHHHCCCccccc
Confidence 44333322110 0 01222211 13211267899999999999999999999998
Q ss_pred ---------------ChhhHHHHHHHHHHhhccccCC--ccCCCCCCCccccc
Q 046789 299 ---------------SPEKMLPFAAQVAAAGCRALGA--RTSLPHRTDPRLAS 334 (336)
Q Consensus 299 ---------------~l~~al~~a~~~Aa~~~~~~g~--~~~~p~~~e~~~~~ 334 (336)
++.+|+++|+++|+.++++.|+ ..++|++++-.++.
T Consensus 378 ~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~vi~~~G~~~~~~~p~~~~~~~~~ 430 (434)
T PRK15074 378 VPNSSKHKRTYLTYSSLAQVCKYANRVSYEVLNQHSPRLSRGLPEREDSLEES 430 (434)
T ss_pred ccccccccccccccCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccchhhhh
Confidence 8999999999999999999999 66788877755443
No 17
>PTZ00247 adenosine kinase; Provisional
Probab=100.00 E-value=7.9e-37 Score=287.18 Aligned_cols=259 Identities=19% Similarity=0.273 Sum_probs=206.9
Q ss_pred EEecCCchHHHHHHHHHcC---C-CceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCeeEEE
Q 046789 15 VVQGGGNAGNALTCAARLG---L-NPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCI 90 (336)
Q Consensus 15 ~~~~GG~a~n~a~~l~~LG---~-~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~~~ 90 (336)
+..+||++.|+|.++++|| . ++.++|.+|+|.+|+.+++.|++.||+++++. .++.+|+.++++++. + .|+++
T Consensus 58 ~~~~GG~~~N~A~~la~lg~~g~~~v~~ig~vG~D~~G~~i~~~l~~~GVd~~~~~-~~~~~Tg~~~i~v~~-~-~r~~~ 134 (345)
T PTZ00247 58 SYVPGGSALNTARVAQWMLQAPKGFVCYVGCVGDDRFAEILKEAAEKDGVEMLFEY-TTKAPTGTCAVLVCG-K-ERSLV 134 (345)
T ss_pred eecCCCHHHHHHHHHHHHhcCCCCcEEEEEEeccchhHHHHHHHHHHcCCeeeccc-cCCCCcEEEEEEEcC-C-Ccccc
Confidence 4789999999999999885 5 89999999999999999999999999998875 567789999998874 4 66666
Q ss_pred ecCCCC-CCCCcccchhhHhhhccCCcEEEEcCC----cHHHHHHHHHHHHhCCCcEEEeCCc------chHhHHHhhhc
Q 046789 91 HTPGDP-PMIPDDLSESTIFSALDGARILYLDGR----LPDTAIIVAQEAARKNIPILIDTER------QRERIDEFLKL 159 (336)
Q Consensus 91 ~~~~~~-~~~~e~~~~~~~~~~l~~~~~i~~~~~----~~~~~~~~~~~a~~~~~~v~~d~~~------~~~~~~~~l~~ 159 (336)
...+++ .+++++++...+.+.+++++++|++++ .++....+++.+++.++++++|+.. .++.+.+++++
T Consensus 135 ~~~ga~~~l~~~~i~~~~~~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~~~~~~~~~l~~ 214 (345)
T PTZ00247 135 ANLGAANHLSAEHMQSHAVQEAIKTAQLYYLEGFFLTVSPNNVLQVAKHARESGKLFCLNLSAPFISQFFFERLLQVLPY 214 (345)
T ss_pred cCcchhhcCChHHcCcHHHHHHHhhCCEEEEEEEEecccHHHHHHHHHHHHHcCCEEEEECCcHHHHHHHHHHHHHHHhh
Confidence 665544 777777765222346899999999985 2467778999999999999999742 23457788999
Q ss_pred CcEEecCcccchhhcCC----CChHHHHHHHHHcC-----CCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHH
Q 046789 160 ASYAVCSAKFPQVWTEA----PSVPSALVSMLLRL-----PNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQL 230 (336)
Q Consensus 160 ~dil~~n~~e~~~l~~~----~~~~~~~~~~l~~~-----~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (336)
+|++++|++|+..+++. ....+++.+.+... .+.+.+|+|+|++|+++++++...
T Consensus 215 ~Dil~~N~~Ea~~l~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvvT~G~~G~~~~~~~~~~---------------- 278 (345)
T PTZ00247 215 VDILFGNEEEAKTFAKAMKWDTEDLKEIAARIAMLPKYSGTRPRLVVFTQGPEPTLIATKDGVT---------------- 278 (345)
T ss_pred CCEEEeCHHHHHHHhhccCCCccCHHHHHHHHHhccccccCCCCEEEEecCCCceEEEECCEEE----------------
Confidence 99999999999999872 22344444444321 257899999999999998865432
Q ss_pred hhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHH
Q 046789 231 KQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQV 310 (336)
Q Consensus 231 ~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~ 310 (336)
++| +++.++.++||||||||+|.|||+++|++|+++++|+++|+++
T Consensus 279 --------~~~--------------------------~~~v~~~~vVDTtGAGDaF~agfl~~l~~g~~~~~al~~a~~a 324 (345)
T PTZ00247 279 --------SVP--------------------------VPPLDQEKIVDTNGAGDAFVGGFLAQYANGKDIDRCVEAGHYS 324 (345)
T ss_pred --------EEe--------------------------ccccCCCCccCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 344 4332334699999999999999999999999999999999999
Q ss_pred HHhhccccCCccCCCCCC
Q 046789 311 AAAGCRALGARTSLPHRT 328 (336)
Q Consensus 311 Aa~~~~~~g~~~~~p~~~ 328 (336)
|+++|++.|+.. |.+.
T Consensus 325 Aa~~v~~~Ga~~--~~~~ 340 (345)
T PTZ00247 325 AQVIIQHNGCTY--PEKP 340 (345)
T ss_pred HHHHHhccCCCC--CCCC
Confidence 999999999863 5444
No 18
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=100.00 E-value=7e-37 Score=282.46 Aligned_cols=266 Identities=21% Similarity=0.266 Sum_probs=210.0
Q ss_pred CCCCCCCCCCceE-----EecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEE
Q 046789 3 SDPLPPLPENRIV-----VQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTY 77 (336)
Q Consensus 3 ~~~~~p~~~~~~~-----~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~ 77 (336)
.+|++| +++.++ ..+||++.|+|.++++||.++.++|.+|+| .|+.+++.|++.||+++++... .+|+.++
T Consensus 15 ~~~~~~-~g~~~~~~~~~~~~GG~~~NvA~~la~lG~~v~~is~vG~D-~g~~~~~~L~~~gId~~~~~~~--~~t~~~~ 90 (304)
T TIGR03828 15 ELDGLT-LGEVNRVESTRIDAGGKGINVSRVLKNLGVDVVALGFLGGF-TGDFIEALLREEGIKTDFVRVP--GETRINV 90 (304)
T ss_pred Eccccc-cCceeecccccccCCccHHHHHHHHHHcCCCeEEEEEecCc-hhHHHHHHHHHCCCcceEEECC--CCCeeeE
Confidence 467888 777766 899999999999999999999999999999 6999999999999999988764 3477777
Q ss_pred EEEcCCCCeeEEEecCCCCCCCCcccch--hhHhhhccCCcEEEEcCCc-----HHHHHHHHHHHHhCCCcEEEeCCcch
Q 046789 78 VIVDNQMKTRTCIHTPGDPPMIPDDLSE--STIFSALDGARILYLDGRL-----PDTAIIVAQEAARKNIPILIDTERQR 150 (336)
Q Consensus 78 ~~~~~~g~~~~~~~~~~~~~~~~e~~~~--~~~~~~l~~~~~i~~~~~~-----~~~~~~~~~~a~~~~~~v~~d~~~~~ 150 (336)
++++.+| +++.+...+ ..+++++++. +.+.+.+++++++|++++. ++....+++.+++.++++++|+...
T Consensus 91 ~~~~~~g-~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~- 167 (304)
T TIGR03828 91 KIKEPSG-TETKLNGPG-PEISEEELEALLEKLRAQLAEGDWLVLSGSLPPGVPPDFYAELIALAREKGAKVILDTSGE- 167 (304)
T ss_pred EEEeCCC-CEEEEECCC-CCCCHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECChH-
Confidence 8887654 666666655 3455444433 1223468899999998764 3567789999999999999999632
Q ss_pred HhHHHhh-hcCcEEecCcccchhhcCCCC----hHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhH
Q 046789 151 ERIDEFL-KLASYAVCSAKFPQVWTEAPS----VPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDS 225 (336)
Q Consensus 151 ~~~~~~l-~~~dil~~n~~e~~~l~~~~~----~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~ 225 (336)
.+...+ ...|++++|++|+..+++... ...+.++.+.+ .+.+.+|+|+|++|++++.+++..
T Consensus 168 -~~~~~~~~~~~i~~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~-~g~~~vvvT~G~~G~~~~~~~~~~----------- 234 (304)
T TIGR03828 168 -ALRDGLKAKPFLIKPNDEELEELFGRELKTLEEIIEAARELLD-LGAENVLISLGADGALLVTKEGAL----------- 234 (304)
T ss_pred -HHHHHHhcCCcEECcCHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCCEEEEccCCCCcEEEcCCceE-----------
Confidence 233333 457899999999999987532 12233444544 389999999999999988755432
Q ss_pred HHHHHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHH
Q 046789 226 LLEQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLP 305 (336)
Q Consensus 226 ~~~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~ 305 (336)
++| + ++.+++|||||||+|.|||+++|++|+++++|++
T Consensus 235 -------------~~~--------------------------~---~~~~vvDttGAGDaF~a~~l~~l~~g~~~~~a~~ 272 (304)
T TIGR03828 235 -------------FAQ--------------------------P---PKGEVVSTVGAGDSMVAGFLAGLESGLSLEEALR 272 (304)
T ss_pred -------------EEe--------------------------C---CCccccCCcChHHHHHHHHHHHHHcCCCHHHHHH
Confidence 333 3 5667899999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCccCCCCCCCccc
Q 046789 306 FAAQVAAAGCRALGARTSLPHRTDPRL 332 (336)
Q Consensus 306 ~a~~~Aa~~~~~~g~~~~~p~~~e~~~ 332 (336)
+|+++|+.+|++.|+. +|+++|++.
T Consensus 273 ~a~~~Aa~~~~~~G~~--~p~~~~~~~ 297 (304)
T TIGR03828 273 LAVAAGSAAAFSEGTG--LPDPEDIEE 297 (304)
T ss_pred HHHHHHHHHhcCcCCC--CCCHHHHHH
Confidence 9999999999999974 799988853
No 19
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7e-37 Score=274.90 Aligned_cols=276 Identities=24% Similarity=0.347 Sum_probs=223.1
Q ss_pred CCCCCCCCCCCceE-----EecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEE
Q 046789 2 SSDPLPPLPENRIV-----VQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFT 76 (336)
Q Consensus 2 ~~~~~~p~~~~~~~-----~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~ 76 (336)
.+++.+|.++++.. ..+||++.|+|+++++||.++.+||++|+|.+|..+.+.|+++||+++++..+.+.+|+..
T Consensus 24 ~~~~~~p~~ge~~~~~~f~~~~GG~~aN~AvaaarLG~~~afiGkvGdD~fG~~l~~~L~~~~V~~~~v~~~~~~~T~~a 103 (330)
T KOG2855|consen 24 PSTRRLPNAGETWEPPGFKTAPGGKGANQAVAAARLGGRVAFIGKVGDDEFGDDLLDILKQNGVDTSGVKFDENARTACA 103 (330)
T ss_pred eccccCCCccccccCCcceecCCCcchhhhhHHHhcCcceeeeecccchhhHHHHHHHHhhCCcccccceecCCCceEEE
Confidence 46778888877666 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCeeEEEecCCCCCCCCcccchhhHhhhccCCcEEEEcCCcH-H---HHHHH--HHHHHhCCCcEEEeC----
Q 046789 77 YVIVDNQMKTRTCIHTPGDPPMIPDDLSESTIFSALDGARILYLDGRLP-D---TAIIV--AQEAARKNIPILIDT---- 146 (336)
Q Consensus 77 ~~~~~~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~i~~~~~~~-~---~~~~~--~~~a~~~~~~v~~d~---- 146 (336)
.+++..+|.++..++...+..+.++.- +...+.++.++++|+....+ + ...++ ++.+++.+.-++.|+
T Consensus 104 ~i~v~~dG~~~~~~v~gan~~~~~~~s--e~~~~~i~~ak~~~~q~ei~~~~~~~s~~~~~~~~~~~~g~~i~~~pn~~l 181 (330)
T KOG2855|consen 104 TITVSKDGENRIIFVRGANADMLPEDS--ELNLEVIKEAKVFHCQSEILIEEPMRSLHIAAVKVAKNAGPAIFYDPNLRL 181 (330)
T ss_pred EEEEccCCceEEEEEecCchhcCcccc--cccHHHHhhccEEEEeeecCCcchhHHHHHhhhhhhhcccccccCCCCccc
Confidence 999998999999888866555555431 12347899999999988764 2 22222 335556665556566
Q ss_pred ------CcchHhHHHhhhcCcEEecCcccchhhcCCCChHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhh
Q 046789 147 ------ERQRERIDEFLKLASYAVCSAKFPQVWTEAPSVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEE 220 (336)
Q Consensus 147 ------~~~~~~~~~~l~~~dil~~n~~e~~~l~~~~~~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~ 220 (336)
...+..+..++..+|++.++.+|...+.+..+... ..++ +++.|.+|||+|++|+.+++++...
T Consensus 182 ~l~~~~~~ne~e~~~i~~~adv~~~s~~e~~fl~~~~~~~~--~~L~--~~~~k~viVTlG~kG~~y~tk~~~~------ 251 (330)
T KOG2855|consen 182 PLWDSLEENESEIASIWNMADVIKVSSQELAFLTGIEDDKI--LKLW--HMKLKLVIVTLGEKGCRYYTKDFKG------ 251 (330)
T ss_pred cccccccccHHHHHHHhhhhhcccccHHHHHHhccCccchH--HHHh--ccCCCEEEEEeCCCceEEEecCCCC------
Confidence 23445577777888888888888888877633222 2333 3477999999999999999987652
Q ss_pred hhhhHHHHHHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhC--C
Q 046789 221 IDVDSLLEQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCAN--M 298 (336)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g--~ 298 (336)
.++| . ..+++||||||||+|+|||+.+|.+| .
T Consensus 252 -----------------~~v~--------------------------~---~~V~~VDtTGAGDsFvgal~~~L~~~~~~ 285 (330)
T KOG2855|consen 252 -----------------SHVP--------------------------A---FKVKAVDTTGAGDSFVGALAVQLVRGSLL 285 (330)
T ss_pred -----------------CCCC--------------------------C---cccccccCCCchHHHHHHHHHHHhhcccc
Confidence 3555 5 56679999999999999999999999 5
Q ss_pred C---hhhHHHHHHHHHHhhccccCCccCCCCCCCcccccC
Q 046789 299 S---PEKMLPFAAQVAAAGCRALGARTSLPHRTDPRLASF 335 (336)
Q Consensus 299 ~---l~~al~~a~~~Aa~~~~~~g~~~~~p~~~e~~~~~~ 335 (336)
+ +++++++|++|++.+++..|+.+++|++++...+++
T Consensus 286 ~~~~L~~~l~~A~a~~ai~v~~~Ga~~s~p~~~~~~~~~~ 325 (330)
T KOG2855|consen 286 PELSLEEALRFANACGAITVQRKGAIPSMPTEKEVQSLLK 325 (330)
T ss_pred chHHHHHHHHHHHHhhhHHhhccCCCccCccHHHHHHHhh
Confidence 5 999999999999999999999999999998876654
No 20
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=3.1e-36 Score=274.71 Aligned_cols=250 Identities=29% Similarity=0.406 Sum_probs=203.2
Q ss_pred CCCCCCCCCCce-----EEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEE
Q 046789 3 SDPLPPLPENRI-----VVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTY 77 (336)
Q Consensus 3 ~~~~~p~~~~~~-----~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~ 77 (336)
.++++|.+++.. ...+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++.||+++++...++.+|+.++
T Consensus 15 ~v~~~p~~~~~~~~~~~~~~~GG~~~Nva~~l~~lg~~~~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~ 94 (279)
T cd01942 15 KVESFPGPFESVLVKDLRREFGGSAGNTAVALAKLGLSPGLVAAVGEDFHGRLYLEELREEGVDTSHVRVVDEDSTGVAF 94 (279)
T ss_pred ecccCCCCCceEecceeeecCCcHHHHHHHHHHHcCCCceEEEEecCCcchHHHHHHHHHcCCCccceEEcCCCCcceEE
Confidence 467888877643 389999999999999999999999999999999999999999999999999766677899998
Q ss_pred EEEcCCCCeeEEEecCCCC-CCCCcccchhhHhhhccCCcEEEEcCCcHHHHHHHHHHHHhCCCcEEEeCCc-----chH
Q 046789 78 VIVDNQMKTRTCIHTPGDP-PMIPDDLSESTIFSALDGARILYLDGRLPDTAIIVAQEAARKNIPILIDTER-----QRE 151 (336)
Q Consensus 78 ~~~~~~g~~~~~~~~~~~~-~~~~e~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~-----~~~ 151 (336)
++++.+ ++|+....++.. .+.+++ . ...++.++++|+++.. ...++++.+++.++++++|+.. ..+
T Consensus 95 ~~~~~~-~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~v~~D~~~~~~~~~~~ 166 (279)
T cd01942 95 ILTDGD-DNQIAYFYPGAMDELEPND-E----ADPDGLADIVHLSSGP--GLIELARELAAGGITVSFDPGQELPRLSGE 166 (279)
T ss_pred EEEcCC-CCEEEEecCCcccccccCC-c----hhhhcccCEEEeCCch--HHHHHHHHHHHcCCeEEEcchhhhhhccHH
Confidence 888765 466666555533 555544 2 2567999999999875 4667788888889999999953 224
Q ss_pred hHHHhhhcCcEEecCcccc---hhhcCCCChHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHH
Q 046789 152 RIDEFLKLASYAVCSAKFP---QVWTEAPSVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLE 228 (336)
Q Consensus 152 ~~~~~l~~~dil~~n~~e~---~~l~~~~~~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~ 228 (336)
.+..+++++|++++|++|+ ..+.+...... ..+.+.+|+|+|++|++++..+...
T Consensus 167 ~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~--------~~~~~~vvvt~G~~G~~~~~~~~~~-------------- 224 (279)
T cd01942 167 ELEEILERADILFVNDYEAELLKERTGLSEAEL--------ASGVRVVVVTLGPKGAIVFEDGEEV-------------- 224 (279)
T ss_pred HHHHHHhhCCEEecCHHHHHHHHhhcCCChHHH--------hcCCCEEEEEECCCceEEEECCceE--------------
Confidence 4678899999999999999 44555432211 1488999999999999998755432
Q ss_pred HHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHH
Q 046789 229 QLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAA 308 (336)
Q Consensus 229 ~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~ 308 (336)
++| ++ ++.+++|||||||+|+|||+++|++|+++++|+++|+
T Consensus 225 ----------~~~--------------------------~~--~~~~vvDttGAGDaf~a~~i~~l~~g~~l~~al~~a~ 266 (279)
T cd01942 225 ----------EVP--------------------------AV--PAVKVVDTTGAGDAFRAGFLYGLLRGYDLEESLRLGN 266 (279)
T ss_pred ----------Ecc--------------------------Cc--CcCCCcCCCCchHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 443 42 3778999999999999999999999999999999999
Q ss_pred HHHHhhccccCC
Q 046789 309 QVAAAGCRALGA 320 (336)
Q Consensus 309 ~~Aa~~~~~~g~ 320 (336)
++|+.++++.|+
T Consensus 267 ~~Aa~~~~~~G~ 278 (279)
T cd01942 267 LAASLKVERRGA 278 (279)
T ss_pred HHHHHHHcccCC
Confidence 999999999886
No 21
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.
Probab=100.00 E-value=6e-36 Score=274.74 Aligned_cols=250 Identities=27% Similarity=0.356 Sum_probs=201.3
Q ss_pred ceEEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCeeEEEec
Q 046789 13 RIVVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHT 92 (336)
Q Consensus 13 ~~~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~~~~~ 92 (336)
.....+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++.||+++++...++.+|+.+++.++.+|.+.+..+.
T Consensus 25 ~~~~~~GG~~~N~a~~la~lg~~~~~i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~ 104 (294)
T cd01166 25 SFRKFFGGAEANVAVGLARLGHRVALVTAVGDDPFGRFILAELRREGVDTSHVRVDPGRPTGLYFLEIGAGGERRVLYYR 104 (294)
T ss_pred ccccccCChHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHcCCCCceEEEeCCCcceEEEEEecCCCCceEEEeC
Confidence 34478999999999999999999999999999999999999999999999999877888899999988766544444443
Q ss_pred C-CC-CCCCCcccchhhHhhhccCCcEEEEcCCcH-------HHHHHHHHHHHhCCCcEEEeCCc---------chHhHH
Q 046789 93 P-GD-PPMIPDDLSESTIFSALDGARILYLDGRLP-------DTAIIVAQEAARKNIPILIDTER---------QRERID 154 (336)
Q Consensus 93 ~-~~-~~~~~e~~~~~~~~~~l~~~~~i~~~~~~~-------~~~~~~~~~a~~~~~~v~~d~~~---------~~~~~~ 154 (336)
. +. ..++.++++. ..+++++++|++++.+ +....+++.+++.++++++|+.. ..+.+.
T Consensus 105 ~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~~~~~~~ 180 (294)
T cd01166 105 AGSAASRLTPEDLDE----AALAGADHLHLSGITLALSESAREALLEALEAAKARGVTVSFDLNYRPKLWSAEEAREALE 180 (294)
T ss_pred CCChhHhCChhhCCH----HHHhCCCEEEEcCcchhhCHHHHHHHHHHHHHHHHcCCEEEECCCCcchhcChHHHHHHHH
Confidence 2 21 2555555552 5678999999998764 45667888999999999999952 124456
Q ss_pred HhhhcCcEEecCcccchhhcCCCChHHHHHHHHHc-CCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhhh
Q 046789 155 EFLKLASYAVCSAKFPQVWTEAPSVPSALVSMLLR-LPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQR 233 (336)
Q Consensus 155 ~~l~~~dil~~n~~e~~~l~~~~~~~~~~~~~l~~-~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (336)
.+++++|++++|.+|+..+++..... .+...++. ..+.+.+++|+|++|++++.++...
T Consensus 181 ~~~~~~dil~~n~~E~~~l~~~~~~~-~~~~~~~~l~~g~~~viit~G~~G~~~~~~~~~~------------------- 240 (294)
T cd01166 181 ELLPYVDIVLPSEEEAEALLGDEDPT-DAAERALALALGVKAVVVKLGAEGALVYTGGGRV------------------- 240 (294)
T ss_pred HHHHhCCEEEcCHHHHHHHhCCCCch-hHHHHHHhhcCCccEEEEEEcCCceEEEECCceE-------------------
Confidence 78899999999999999988764322 22222221 2488999999999999998764332
Q ss_pred cCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHh
Q 046789 234 KDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAA 313 (336)
Q Consensus 234 ~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~ 313 (336)
++| + ++.+++||+||||+|+|||+++|++|+++++|+++|+++|+.
T Consensus 241 -----~~~--------------------------~---~~~~~vdt~GAGD~f~a~~~~~l~~g~~~~~a~~~a~~~aa~ 286 (294)
T cd01166 241 -----FVP--------------------------A---YPVEVVDTTGAGDAFAAGFLAGLLEGWDLEEALRFANAAAAL 286 (294)
T ss_pred -----EeC--------------------------C---CCcccccCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 343 4 456789999999999999999999999999999999999999
Q ss_pred hccccCC
Q 046789 314 GCRALGA 320 (336)
Q Consensus 314 ~~~~~g~ 320 (336)
+|++.|+
T Consensus 287 ~i~~~G~ 293 (294)
T cd01166 287 VVTRPGD 293 (294)
T ss_pred HHhcCCC
Confidence 9999886
No 22
>cd01944 YegV_kinase_like YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=6.5e-36 Score=274.16 Aligned_cols=256 Identities=17% Similarity=0.214 Sum_probs=199.0
Q ss_pred CCCCCCCCCCceE-----EecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEE
Q 046789 3 SDPLPPLPENRIV-----VQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTY 77 (336)
Q Consensus 3 ~~~~~p~~~~~~~-----~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~ 77 (336)
.+|++|.++...+ ..+|| +.|+|.+|++||.++.++|.+|+|.+|+.+++.|++.||+++++.. .+.+|+.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~GG-~~Nva~~l~~lG~~~~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~-~~~~t~~~~ 92 (289)
T cd01944 15 DVDKLPASGGDIEAKSKSYVIGG-GFNVMVAASRLGIPTVNAGPLGNGNWADQIRQAMRDEGIEILLPPR-GGDDGGCLV 92 (289)
T ss_pred ecccCCCCCCccccceeeeccCc-HHHHHHHHHHcCCCeEEEEEecCChHHHHHHHHHHHcCCccccccc-cCCCCeEEE
Confidence 4677788776543 88999 9999999999999999999999999999999999999999999876 456677777
Q ss_pred EEEcCCCCeeEEEecCCC-CCCCCcccchhhHhhhccCCcEEEEcCCcH-------HHHHHHHHHHHhCCCcEEEeCCcc
Q 046789 78 VIVDNQMKTRTCIHTPGD-PPMIPDDLSESTIFSALDGARILYLDGRLP-------DTAIIVAQEAARKNIPILIDTERQ 149 (336)
Q Consensus 78 ~~~~~~g~~~~~~~~~~~-~~~~~e~~~~~~~~~~l~~~~~i~~~~~~~-------~~~~~~~~~a~~~~~~v~~d~~~~ 149 (336)
++++.+| .|+.++..+. ..+++++++. ..+..++++|+++... ....++++..+ .++++++|+...
T Consensus 93 ~~~~~~g-~r~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~D~~~~ 166 (289)
T cd01944 93 ALVEPDG-ERSFISISGAEQDWSTEWFAT----LTVAPYDYVYLSGYTLASENASKVILLEWLEALP-AGTTLVFDPGPR 166 (289)
T ss_pred EEEcCCC-ceEEEEeCCccCCCCHHHhcc----ccCCCCCEEEEeCccccCcchhHHHHHHHHHhcc-CCCEEEEcCccc
Confidence 7877655 5555554443 3556665554 2367899999987642 23345555533 568899999521
Q ss_pred -----hHhHHHhhhcCcEEecCcccchhhcCCCChHHH-HHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhh
Q 046789 150 -----RERIDEFLKLASYAVCSAKFPQVWTEAPSVPSA-LVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDV 223 (336)
Q Consensus 150 -----~~~~~~~l~~~dil~~n~~e~~~l~~~~~~~~~-~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~ 223 (336)
.+.+..+++++|++++|++|+..+++.....+. .+..+.. .+.+.||+|+|++|++++.+++..
T Consensus 167 ~~~~~~~~~~~~l~~~d~~~~n~~E~~~l~g~~~~~~~~~~~~~~~-~~~~~vvvt~G~~Ga~~~~~~~~~--------- 236 (289)
T cd01944 167 ISDIPDTILQALMAKRPIWSCNREEAAIFAERGDPAAEASALRIYA-KTAAPVVVRLGSNGAWIRLPDGNT--------- 236 (289)
T ss_pred ccccCHHHHHHHHhcCCEEccCHHHHHHHhCCCCcchHHHHHHHHh-ccCCeEEEEECCCcEEEEecCCCe---------
Confidence 345678899999999999999999886543322 2333433 378899999999999998754332
Q ss_pred hHHHHHHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhH
Q 046789 224 DSLLEQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKM 303 (336)
Q Consensus 224 ~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~a 303 (336)
.++| + ++.+++|||||||+|+|||++++++|+++++|
T Consensus 237 --------------~~~~--------------------------~---~~~~vvDt~GAGDaf~ag~l~~~~~g~~~~~a 273 (289)
T cd01944 237 --------------HIIP--------------------------G---FKVKAVDTIGAGDTHAGGMLAGLAKGMSLADA 273 (289)
T ss_pred --------------EEec--------------------------C---CCCCCccCCCchHHHHHHHHHHHHcCCCHHHH
Confidence 1333 4 55688999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccC
Q 046789 304 LPFAAQVAAAGCRALG 319 (336)
Q Consensus 304 l~~a~~~Aa~~~~~~g 319 (336)
+++|+++|+.+|++.|
T Consensus 274 ~~~a~a~aa~~~~~~G 289 (289)
T cd01944 274 VLLANAAAAIVVTRSG 289 (289)
T ss_pred HHHHHHHHHhhhccCC
Confidence 9999999999999876
No 23
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=2.8e-36 Score=284.72 Aligned_cols=250 Identities=26% Similarity=0.341 Sum_probs=202.5
Q ss_pred ceEEecCCchHHHHHHHHH-cCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCeeEEEe
Q 046789 13 RIVVQGGGNAGNALTCAAR-LGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIH 91 (336)
Q Consensus 13 ~~~~~~GG~a~n~a~~l~~-LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~~~~ 91 (336)
..+.++||++.|++.++++ ||.++.++|.+|+|.+|+.+++.|++.||+++.+.. .+.+|+.++++++.+| .|++..
T Consensus 80 ~~~~~~GGsa~N~a~~la~~LG~~~~~ig~VG~D~~G~~~~~~L~~~GI~~~~~~~-~~~~Tg~~~v~v~~dg-ert~~~ 157 (367)
T PLN02379 80 PIKTMAGGSVANTIRGLSAGFGVSTGIIGACGDDEQGKLFVSNMGFSGVDLSRLRA-KKGPTAQCVCLVDALG-NRTMRP 157 (367)
T ss_pred cceecCCCHHHHHHHHHHHhcCCCEEEEEEeCCChhHHHHHHHHHHcCCCccCccc-CCCCCceEEEEECCCC-CccccC
Confidence 3568899999999999986 999999999999999999999999999999888754 4567999999998765 444443
Q ss_pred cCC-CCCCCCcccchhhHhhhccCCcEEEEcCC--cHHHHHHHHHHHHhCCCcEEEeCCc------chHhHHHhhh--cC
Q 046789 92 TPG-DPPMIPDDLSESTIFSALDGARILYLDGR--LPDTAIIVAQEAARKNIPILIDTER------QRERIDEFLK--LA 160 (336)
Q Consensus 92 ~~~-~~~~~~e~~~~~~~~~~l~~~~~i~~~~~--~~~~~~~~~~~a~~~~~~v~~d~~~------~~~~~~~~l~--~~ 160 (336)
..+ ...++++++.. +.+++++++|++.. .++...++++.++++++++++|+.. .++.+..+++ ++
T Consensus 158 ~lg~~~~l~~~~~~~----~~~~~~~~v~v~~~~~~~~~~~~~~~~A~~~g~~v~lD~s~~~~v~~~r~~l~~ll~~~~v 233 (367)
T PLN02379 158 CLSSAVKLQADELTK----EDFKGSKWLVLRYGFYNLEVIEAAIRLAKQEGLSVSLDLASFEMVRNFRSPLLQLLESGKI 233 (367)
T ss_pred CccccccCChhHCCH----HHHhcCCEEEEEcccCCHHHHHHHHHHHHHcCCEEEEeccchhhhhhhhHHHHHHhhcCCc
Confidence 333 23566666664 56789999999932 2577788999999999999999953 3456666774 89
Q ss_pred cEEecCcccchhhcCCC--ChHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhhhcCCCC
Q 046789 161 SYAVCSAKFPQVWTEAP--SVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKDDRA 238 (336)
Q Consensus 161 dil~~n~~e~~~l~~~~--~~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (336)
|++++|++|+..+++.. +..+.+...+.. +++.+++|+|++|++++..++..
T Consensus 234 Dilf~Ne~Ea~~l~~~~~~~~~~~~~~~l~~--~~~~vvvT~G~~Ga~~~~~~~~~------------------------ 287 (367)
T PLN02379 234 DLCFANEDEARELLRGEQESDPEAALEFLAK--YCNWAVVTLGSKGCIARHGKEVV------------------------ 287 (367)
T ss_pred cEEEcCHHHHHHHhcCCCCCCHHHHHHHHHh--cCCEEEEEECCCCeEEEECCEEE------------------------
Confidence 99999999999888632 334555555554 78999999999999998765432
Q ss_pred CCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhcccc
Q 046789 239 AVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRAL 318 (336)
Q Consensus 239 ~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~~~~ 318 (336)
++| ++ ++.++||||||||+|.|||+|++++|+++++|+++|+++|+.+|++.
T Consensus 288 ~v~--------------------------a~--~~~~vVDTtGAGDaFaagfl~gl~~G~~l~~a~~~g~~aAa~vi~~~ 339 (367)
T PLN02379 288 RVP--------------------------AI--GETNAVDATGAGDLFASGFLYGLIKGLSLEECCKVGACSGGSVVRAL 339 (367)
T ss_pred Eec--------------------------CC--CCCCcccCCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHhcc
Confidence 444 42 34579999999999999999999999999999999999999999999
Q ss_pred CCcc
Q 046789 319 GART 322 (336)
Q Consensus 319 g~~~ 322 (336)
|+..
T Consensus 340 G~~~ 343 (367)
T PLN02379 340 GGEV 343 (367)
T ss_pred CCCC
Confidence 9863
No 24
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=100.00 E-value=1.1e-35 Score=273.30 Aligned_cols=258 Identities=27% Similarity=0.367 Sum_probs=204.4
Q ss_pred CCCCCCCCC---ceEEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEE
Q 046789 4 DPLPPLPEN---RIVVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIV 80 (336)
Q Consensus 4 ~~~~p~~~~---~~~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~ 80 (336)
+|.++.++. .....+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++.||+++++.+.++.+|+.+++++
T Consensus 10 ~D~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lg~~v~~i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~T~~~~~~~ 89 (295)
T cd01167 10 IDFIPEGSGAPETFTKAPGGAPANVAVALARLGGKAAFIGKVGDDEFGDFLLETLKEAGVDTRGIQFDPAAPTTLAFVTL 89 (295)
T ss_pred EEEecCCCCCCccccccCCCcHHHHHHHHHhcCCCeEEEEeecCcHHHHHHHHHHHHcCCCchheeecCCCCceEEEEEE
Confidence 344444442 45688999999999999999999999999999999999999999999999999866788899999998
Q ss_pred cCCCCeeEEEecCCCCCCCCc-ccchhhHhhhccCCcEEEEcCCc------HHHHHHHHHHHHhCCCcEEEeCCcc----
Q 046789 81 DNQMKTRTCIHTPGDPPMIPD-DLSESTIFSALDGARILYLDGRL------PDTAIIVAQEAARKNIPILIDTERQ---- 149 (336)
Q Consensus 81 ~~~g~~~~~~~~~~~~~~~~e-~~~~~~~~~~l~~~~~i~~~~~~------~~~~~~~~~~a~~~~~~v~~d~~~~---- 149 (336)
+.+|.+.+.+..........+ ++. .+.+++++++++++.. .+...++++.+++.++++++|+...
T Consensus 90 ~~~g~r~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~d~~~~~~~~ 165 (295)
T cd01167 90 DADGERSFEFYRGPAADLLLDTELN----PDLLSEADILHFGSIALASEPSRSALLELLEAAKKAGVLISFDPNLRPPLW 165 (295)
T ss_pred CCCCCEeEEeecCCcHhhhcCccCC----hhHhccCCEEEEechhhccchHHHHHHHHHHHHHHcCCEEEEcCCCChhhc
Confidence 866544444433332222211 122 3568899999997652 2456788899999999999999521
Q ss_pred ------hHhHHHhhhcCcEEecCcccchhhcCCCChHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhh
Q 046789 150 ------RERIDEFLKLASYAVCSAKFPQVWTEAPSVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDV 223 (336)
Q Consensus 150 ------~~~~~~~l~~~dil~~n~~e~~~l~~~~~~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~ 223 (336)
.+.+..+++++|++++|++|+..+++.....+ ..+.+.. .+.+.+|+|+|++|++++++++..
T Consensus 166 ~~~~~~~~~~~~~l~~~d~l~~n~~E~~~l~~~~~~~~-~~~~l~~-~g~~~vvvt~G~~G~~~~~~~~~~--------- 234 (295)
T cd01167 166 RDEEEARERIAELLELADIVKLSDEELELLFGEEDPEE-IAALLLL-FGLKLVLVTRGADGALLYTKGGVG--------- 234 (295)
T ss_pred CCHHHHHHHHHHHHHhCCEEEecHHHHHHHhCCCCHHH-HHHHHhh-cCCCEEEEecCCcceEEEECCcce---------
Confidence 23456789999999999999999988755433 3444444 489999999999999998765443
Q ss_pred hHHHHHHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCC-----
Q 046789 224 DSLLEQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANM----- 298 (336)
Q Consensus 224 ~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~----- 298 (336)
++| + ++.+++|||||||+|+|||+++|++|+
T Consensus 235 ---------------~~~--------------------------a---~~~~vvDttGAGD~f~a~~~~~l~~g~~~~~~ 270 (295)
T cd01167 235 ---------------EVP--------------------------G---IPVEVVDTTGAGDAFVAGLLAQLLSRGLLALD 270 (295)
T ss_pred ---------------eeC--------------------------C---CCcceeeCCCccHHHHHHHHHHHHhCCccccc
Confidence 444 5 567899999999999999999999999
Q ss_pred --ChhhHHHHHHHHHHhhccccCC
Q 046789 299 --SPEKMLPFAAQVAAAGCRALGA 320 (336)
Q Consensus 299 --~l~~al~~a~~~Aa~~~~~~g~ 320 (336)
++++|+++|+++|+.+|++.|+
T Consensus 271 ~~~~~~a~~~a~~~aa~~~~~~G~ 294 (295)
T cd01167 271 EDELAEALRFANAVGALTCTKAGA 294 (295)
T ss_pred HHHHHHHHHHHHHhhHHHhcccCC
Confidence 9999999999999999999886
No 25
>PRK09954 putative kinase; Provisional
Probab=100.00 E-value=8.5e-36 Score=281.91 Aligned_cols=259 Identities=21% Similarity=0.223 Sum_probs=197.0
Q ss_pred CCCCCCC---ceEEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcC
Q 046789 6 LPPLPEN---RIVVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDN 82 (336)
Q Consensus 6 ~~p~~~~---~~~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~ 82 (336)
.+|.+++ .....+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++.||+++++...++.+|+.++++.+.
T Consensus 77 ~~p~~~~~~~~~~~~~GG~~~NvA~~larLG~~v~~ig~VG~D~~G~~i~~~l~~~GVd~~~~~~~~~~~T~~~~~~~~~ 156 (362)
T PRK09954 77 RYPQAASHPGTIHCSAGGVGRNIAHNLALLGRDVHLLSAIGDDFYGETLLEETRRAGVNVSGCIRLHGQSTSTYLAIANR 156 (362)
T ss_pred cCcCCCCCCceEEEecCcHHHHHHHHHHHcCCCeEEEEEECCCHHHHHHHHHHHHcCCCccceEEcCCCCCeEEEEEEcC
Confidence 5565543 3448899999999999999999999999999999999999999999999999887777778888777765
Q ss_pred CCCeeEEEec-CCC-CCCCCcccchhhHhhhccCCcEEEEcCCcHHHHH-HHHHHHHhCCCcEEEeCCcc--hHhHHHhh
Q 046789 83 QMKTRTCIHT-PGD-PPMIPDDLSESTIFSALDGARILYLDGRLPDTAI-IVAQEAARKNIPILIDTERQ--RERIDEFL 157 (336)
Q Consensus 83 ~g~~~~~~~~-~~~-~~~~~e~~~~~~~~~~l~~~~~i~~~~~~~~~~~-~~~~~a~~~~~~v~~d~~~~--~~~~~~~l 157 (336)
++ +++.... +.. ..++++.+.. ..+.+..++++++++..|.... .+++.+ +++++++|+... ...+..++
T Consensus 157 ~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~a--~~~~v~~D~~~~~~~~~~~~~l 231 (362)
T PRK09954 157 QD-ETVLAINDTHILQQLTPQLLNG--SRDLIRHAGVVLADCNLTAEALEWVFTLA--DEIPVFVDTVSEFKAGKIKHWL 231 (362)
T ss_pred CC-CEEEEEcCchhhhcCCHHHHHH--HHHHHhcCCEEEEECCCCHHHHHHHHHhC--CCCcEEEECCCHHHhhhhhhhh
Confidence 43 4443332 211 2444443332 2345788999999887765433 444443 478999999642 23467889
Q ss_pred hcCcEEecCcccchhhcCCCC----hHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhhh
Q 046789 158 KLASYAVCSAKFPQVWTEAPS----VPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQR 233 (336)
Q Consensus 158 ~~~dil~~n~~e~~~l~~~~~----~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (336)
+++|++++|++|+..+++... ..+.+...+.. .+++.||||+|++|++++..++..
T Consensus 232 ~~~dil~~n~~Ea~~l~g~~~~~~~~~~~~~~~l~~-~g~~~Vvvt~G~~G~~~~~~~~~~------------------- 291 (362)
T PRK09954 232 AHIHTLKPTQPELEILWGQAITSDADRNAAVNALHQ-QGVQQIFVYLPDESVFCSEKDGEQ------------------- 291 (362)
T ss_pred ccccEEecCHHHHHHHcCCCCCCHHHHHHHHHHHHH-cCCCEEEEEeCCccEEEEeCCCce-------------------
Confidence 999999999999999987531 12344555554 389999999999999887654321
Q ss_pred cCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHh
Q 046789 234 KDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAA 313 (336)
Q Consensus 234 ~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~ 313 (336)
.++| . ++++++|||||||+|.|||++++++|+++++|+++|+++|++
T Consensus 292 ----~~~~--------------------------~---~~v~vvDttGAGDaF~Ag~l~~l~~g~~~~eal~~a~a~Aal 338 (362)
T PRK09954 292 ----FLLT--------------------------A---PAHTTVDSFGADDGFMAGLVYSFLEGYSFRDSARFAMACAAI 338 (362)
T ss_pred ----Eecc--------------------------C---CCcccccccchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 1333 3 567899999999999999999999999999999999999999
Q ss_pred hccccCCcc
Q 046789 314 GCRALGART 322 (336)
Q Consensus 314 ~~~~~g~~~ 322 (336)
++.+..+..
T Consensus 339 ~~~s~~~~~ 347 (362)
T PRK09954 339 SRASGSLNN 347 (362)
T ss_pred HhcCCCcCC
Confidence 977655443
No 26
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=100.00 E-value=2.5e-35 Score=266.82 Aligned_cols=250 Identities=24% Similarity=0.219 Sum_probs=193.7
Q ss_pred CCCCCCCCCCceEEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcC
Q 046789 3 SDPLPPLPENRIVVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDN 82 (336)
Q Consensus 3 ~~~~~p~~~~~~~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~ 82 (336)
++|.+|.+ .+..+||++.|+|.++++||.++.++|.+|+|++|+.+++.|++.||+++++...+ .+|+.++++ ..
T Consensus 9 ~~D~~~~~---~~~~~GG~~~Nva~~la~lG~~~~~~~~vG~D~~g~~i~~~l~~~gI~~~~v~~~~-~~t~~~~~~-~~ 83 (264)
T cd01940 9 VVDKYLHL---GKMYPGGNALNVAVYAKRLGHESAYIGAVGNDDAGAHVRSTLKRLGVDISHCRVKE-GENAVADVE-LV 83 (264)
T ss_pred EEEEeccC---ceecCCCcHHHHHHHHHHcCCCeeEEecccCchhHHHHHHHHHHcCCChhheEEcC-CCCceEEEE-ec
Confidence 35566553 46889999999999999999999999999999999999999999999999987744 568777754 44
Q ss_pred CCCeeEEEecCCCC-CCCCcccchhhHhhhccCCcEEEEcCCcH-HHHHHHHHHHHhCCCcEEEeCCcch--HhHHHhhh
Q 046789 83 QMKTRTCIHTPGDP-PMIPDDLSESTIFSALDGARILYLDGRLP-DTAIIVAQEAARKNIPILIDTERQR--ERIDEFLK 158 (336)
Q Consensus 83 ~g~~~~~~~~~~~~-~~~~e~~~~~~~~~~l~~~~~i~~~~~~~-~~~~~~~~~a~~~~~~v~~d~~~~~--~~~~~~l~ 158 (336)
+|.+.+..+..+.. ...+.+.. ...+++++++|+++..+ +...++++.+++.++++++|+...+ +.+..+++
T Consensus 84 ~g~r~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~ 159 (264)
T cd01940 84 DGDRIFGLSNKGGVAREHPFEAD----LEYLSQFDLVHTGIYSHEGHLEKALQALVGAGALISFDFSDRWDDDYLQLVCP 159 (264)
T ss_pred CCceEEEeecCCcHHhcccCccc----HhHHhcCCEEEEcccccHHHHHHHHHHHHHcCCEEEEcCcccCCHHHHHhhcc
Confidence 55444444443421 22222111 24578999999998874 5677899999999999999995432 33567889
Q ss_pred cCcEEecCcccchhhcCCCChHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhhhcCCCC
Q 046789 159 LASYAVCSAKFPQVWTEAPSVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKDDRA 238 (336)
Q Consensus 159 ~~dil~~n~~e~~~l~~~~~~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (336)
++|++++|++|... . ..+...+.+.. .+++.+|+|+|++|++++.+++..
T Consensus 160 ~~d~~~~~~~~~~~----~-~~~~~~~~l~~-~~~~~vvvT~G~~G~~~~~~~~~~------------------------ 209 (264)
T cd01940 160 YVDFAFFSASDLSD----E-EVKAKLKEAVS-RGAKLVIVTRGEDGAIAYDGAVFY------------------------ 209 (264)
T ss_pred cCCEEEechhhcCc----c-hHHHHHHHHHH-cCCCEEEEEECCCCeEEEeCCeEE------------------------
Confidence 99999999776531 1 22333444443 389999999999999998754332
Q ss_pred CCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCC-hhhHHHHHHHHHHhhccc
Q 046789 239 AVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMS-PEKMLPFAAQVAAAGCRA 317 (336)
Q Consensus 239 ~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~-l~~al~~a~~~Aa~~~~~ 317 (336)
++| + ++.+++|||||||+|.|||++++++|++ +++|+++|+++|+++|++
T Consensus 210 ~~~--------------------------~---~~~~~vDttGAGDaf~ag~i~~l~~g~~~~~~al~~a~~~aa~~~~~ 260 (264)
T cd01940 210 SVA--------------------------P---RPVEVVDTLGAGDSFIAGFLLSLLAGGTAIAEAMRQGAQFAAKTCGH 260 (264)
T ss_pred ecC--------------------------C---cCCCCCCCCCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhcc
Confidence 333 4 5778999999999999999999999999 999999999999999999
Q ss_pred cCC
Q 046789 318 LGA 320 (336)
Q Consensus 318 ~g~ 320 (336)
.|+
T Consensus 261 ~G~ 263 (264)
T cd01940 261 EGA 263 (264)
T ss_pred cCC
Confidence 986
No 27
>PLN02548 adenosine kinase
Probab=100.00 E-value=1e-35 Score=278.28 Aligned_cols=266 Identities=18% Similarity=0.288 Sum_probs=202.2
Q ss_pred CCCCCCCCCceE-----EecCCchHHHHHH---HHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccE
Q 046789 4 DPLPPLPENRIV-----VQGGGNAGNALTC---AARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPF 75 (336)
Q Consensus 4 ~~~~p~~~~~~~-----~~~GG~a~n~a~~---l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~ 75 (336)
++++|.+++.+. ..+||++.|++.. +++||.++.++|.+|+|.+|+.+++.|++.||+++++.. .+.+|+.
T Consensus 32 ~~~~p~~~~~~~~~~~~~~~GG~~~Nva~~a~~l~~lg~~~~~ig~vG~D~~g~~i~~~L~~~gVd~~~~~~-~~~~T~~ 110 (332)
T PLN02548 32 EKHLPMYDELASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYMGCIGKDKFGEEMKKCATAAGVNVHYYED-ESTPTGT 110 (332)
T ss_pred HHHHHHHHHHhccCCceecCCcHHHHHHHHHHHHhcCCCcEEEEEEEcCChhHHHHHHHHHHcCCceeeecc-CCCCCce
Confidence 455666666544 8899999998554 456799999999999999999999999999999998754 6677988
Q ss_pred EEEEEcCCCCeeEEEecCCC-CCCCCcccchhhHhhhccCCcEEEEcCCc----HHHHHHHHHHHHhCCCcEEEeCCcc-
Q 046789 76 TYVIVDNQMKTRTCIHTPGD-PPMIPDDLSESTIFSALDGARILYLDGRL----PDTAIIVAQEAARKNIPILIDTERQ- 149 (336)
Q Consensus 76 ~~~~~~~~g~~~~~~~~~~~-~~~~~e~~~~~~~~~~l~~~~~i~~~~~~----~~~~~~~~~~a~~~~~~v~~d~~~~- 149 (336)
++++++ +|. |.++...+. ..++++++......+.++.++++|+++.. ++....+++.+++.+.++.+|+...
T Consensus 111 ~~i~~~-~g~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~ 188 (332)
T PLN02548 111 CAVLVV-GGE-RSLVANLSAANCYKVEHLKKPENWALVEKAKFYYIAGFFLTVSPESIMLVAEHAAANNKTFMMNLSAPF 188 (332)
T ss_pred EEEEEe-cCC-ceeeeccchhhcCCHHHhcChhhHhHHhhCCEEEEEEEEccCCHHHHHHHHHHHHHcCCEEEEECCChh
Confidence 888886 444 444444332 34555555432123457899999998753 4566678888999999888888421
Q ss_pred -----hHhHHHhhhcCcEEecCcccchhhcCCC----ChHHHHHHHHHcC-----CCCcEEEEeecCCceEEEeeccCCC
Q 046789 150 -----RERIDEFLKLASYAVCSAKFPQVWTEAP----SVPSALVSMLLRL-----PNLRFAIVTLGEDGCIMLERSVNES 215 (336)
Q Consensus 150 -----~~~~~~~l~~~dil~~n~~e~~~l~~~~----~~~~~~~~~l~~~-----~~~~~vvvt~G~~G~~~~~~~~~~~ 215 (336)
.+.+..+++++|++++|++|+..+++.. ...+.+...+.+. .+.+.+|+|+|++|++++..+...
T Consensus 189 ~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~~~~~g~~~~~vvvT~G~~G~~~~~~~~~~- 267 (332)
T PLN02548 189 ICEFFKDQLMEALPYVDFLFGNETEARTFAKVQGWETEDVEEIALKISALPKASGTHKRTVVITQGADPTVVAEDGKVK- 267 (332)
T ss_pred HHHHhHHHHHHHHhhCCEEEecHHHHHHHhCccCCCcccHHHHHHHHHHhhhhccccCCEEEEEeCCCcEEEEECCeEE-
Confidence 3457788999999999999999887642 1222333333221 157899999999999998655432
Q ss_pred CchhhhhhhHHHHHHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHH
Q 046789 216 PELEEIDVDSLLEQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALC 295 (336)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~ 295 (336)
++| ++++++.+++|||||||+|+|||+++++
T Consensus 268 -----------------------~~p--------------------------a~~~~~~~vvDttGAGDaF~ag~l~~l~ 298 (332)
T PLN02548 268 -----------------------EFP--------------------------VIPLPKEKLVDTNGAGDAFVGGFLSQLV 298 (332)
T ss_pred -----------------------Eec--------------------------cccCCcCccccCCCchHHHHHHHHHHHH
Confidence 444 4444567899999999999999999999
Q ss_pred hCCChhhHHHHHHHHHHhhccccCCcc
Q 046789 296 ANMSPEKMLPFAAQVAAAGCRALGART 322 (336)
Q Consensus 296 ~g~~l~~al~~a~~~Aa~~~~~~g~~~ 322 (336)
+|+++++|+++|+++|+++|++.|+..
T Consensus 299 ~g~~l~eal~~a~aaAa~~v~~~G~~~ 325 (332)
T PLN02548 299 QGKDIEECVRAGNYAANVIIQRSGCTY 325 (332)
T ss_pred cCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence 999999999999999999999999874
No 28
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=100.00 E-value=2.1e-35 Score=274.00 Aligned_cols=259 Identities=23% Similarity=0.245 Sum_probs=200.1
Q ss_pred EEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCeeEEEecCC
Q 046789 15 VVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHTPG 94 (336)
Q Consensus 15 ~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~~~~~~~ 94 (336)
+..+|| +.|+|.++++||.++.++|.+|+|.+|+.+++.|++.||+++++...++.+|+.++.+++.+ .........
T Consensus 44 ~~~~GG-a~NvA~~l~~lg~~v~~i~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~~~ 120 (315)
T TIGR02198 44 EDRLGG-AANVARNIASLGARVFLVGVVGDDEAGKRLEALLAEEGIDTSGLIRDKDRPTTTKTRVLARN--QQLLRVDFE 120 (315)
T ss_pred EecCcH-HHHHHHHHHhcCCceEEEEEEecchhHHHHHHHHHHCCCCcceEEECCCCCcceEEEEEcCC--eEEEEecCC
Confidence 367888 79999999999999999999999999999999999999999988776777888888888753 233333322
Q ss_pred CC-CCCCcccch--hhHhhhccCCcEEEEcCCc-----HHHHHHHHHHHHhCCCcEEEeCCcchHhHHHhhhcCcEEecC
Q 046789 95 DP-PMIPDDLSE--STIFSALDGARILYLDGRL-----PDTAIIVAQEAARKNIPILIDTERQRERIDEFLKLASYAVCS 166 (336)
Q Consensus 95 ~~-~~~~e~~~~--~~~~~~l~~~~~i~~~~~~-----~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~l~~~dil~~n 166 (336)
.. .+....... +.+.+.++++|++++++.. ++....+++.+++.++++++|+... ....++.+|++++|
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~---~~~~~~~~d~l~~n 197 (315)
T TIGR02198 121 ERDPINAELEARLLAAIREQLASADAVVLSDYAKGVLTPRVVQEVIAAARKHGKPVLVDPKGK---DFSRYRGATLITPN 197 (315)
T ss_pred CCCCCCHHHHHHHHHHHHhhhhhCCEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEeCCCc---chhhcCCCcEECCC
Confidence 11 233222111 2234568999999997543 5667789999999999999999633 12357899999999
Q ss_pred cccchhhcCCC---ChHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhhhcCCCCCCccc
Q 046789 167 AKFPQVWTEAP---SVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVPTC 243 (336)
Q Consensus 167 ~~e~~~l~~~~---~~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~ 243 (336)
.+|++.+++.. ...+..+..+....+++.+|+|+|++|++++.+++.. .++|
T Consensus 198 ~~E~~~l~~~~~~~~~~~~~~~~l~~~~g~~~vivT~G~~G~~~~~~~~~~-----------------------~~~~-- 252 (315)
T TIGR02198 198 RKEAEAAVGACDTEAELVQAAEKLLEELDLEALLVTRSEKGMTLFTREGEP-----------------------IHIP-- 252 (315)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEEEcCCCCeEEEecCCCe-----------------------EEec--
Confidence 99999998742 1223333334333489999999999999988743221 1333
Q ss_pred cchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhccccCCccC
Q 046789 244 ISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRALGARTS 323 (336)
Q Consensus 244 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~~~~g~~~~ 323 (336)
. ++.+++||+||||+|.|||++++++|+++++|+++|+++|+++|++.|+..
T Consensus 253 ------------------------~---~~~~vvdt~GAGDaf~ag~~~~l~~g~~~~~al~~A~~~aa~~~~~~G~~~- 304 (315)
T TIGR02198 253 ------------------------A---QAREVYDVTGAGDTVIATLALALAAGASLEEACRLANAAAGVVVGKLGTAT- 304 (315)
T ss_pred ------------------------C---CCCCCCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhhccCCCCC-
Confidence 4 456899999999999999999999999999999999999999999999875
Q ss_pred CCCCCCcccc
Q 046789 324 LPHRTDPRLA 333 (336)
Q Consensus 324 ~p~~~e~~~~ 333 (336)
+++++++..
T Consensus 305 -~~~~~~~~~ 313 (315)
T TIGR02198 305 -VSPAELANA 313 (315)
T ss_pred -CCHHHHHHH
Confidence 788887643
No 29
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=100.00 E-value=1.6e-35 Score=274.22 Aligned_cols=267 Identities=19% Similarity=0.263 Sum_probs=206.1
Q ss_pred CCCCCCCCCCceE-----EecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEE
Q 046789 3 SDPLPPLPENRIV-----VQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTY 77 (336)
Q Consensus 3 ~~~~~p~~~~~~~-----~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~ 77 (336)
.+|+++ +++..+ ..+||++.|+|.++++||.++.+++.+|+ ++|+.+++.|++.||+++++...+ .+++.++
T Consensus 18 ~~~~~~-~~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~i~~vG~-~~g~~i~~~l~~~gv~~~~~~~~~-~~~~~~~ 94 (309)
T PRK10294 18 ITPQIY-PEGKLRCSAPVFEPGGGGINVARAIAHLGGSATAIFPAGG-ATGEHLVSLLADENVPVATVEAKD-WTRQNLH 94 (309)
T ss_pred EeCcee-eCCeEEeccceecCCccHHHHHHHHHHcCCCeEEEEEecC-ccHHHHHHHHHHcCCCceEEECCC-CCeeeEE
Confidence 467775 666666 78999999999999999999999999996 799999999999999999987643 3444455
Q ss_pred EEEcCCCCeeEEEecCCCCCCCCcccch-hhHhhhccCCcEEEEcCCcH-----HHHHHHHHHHHhCCCcEEEeCCcchH
Q 046789 78 VIVDNQMKTRTCIHTPGDPPMIPDDLSE-STIFSALDGARILYLDGRLP-----DTAIIVAQEAARKNIPILIDTERQRE 151 (336)
Q Consensus 78 ~~~~~~g~~~~~~~~~~~~~~~~e~~~~-~~~~~~l~~~~~i~~~~~~~-----~~~~~~~~~a~~~~~~v~~d~~~~~~ 151 (336)
+..+.+| .++.++.++ ..++.+++.. ....+.++.++++++++..+ +.+..+++.+++.++++++|+...
T Consensus 95 i~~~~~g-~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~-- 170 (309)
T PRK10294 95 VHVEASG-EQYRFVMPG-AALNEDEFRQLEEQVLEIESGAILVISGSLPPGVKLEKLTQLISAAQKQGIRCIIDSSGD-- 170 (309)
T ss_pred EEEcCCC-cEEEEECCC-CCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCH--
Confidence 5666555 466666665 3455554443 11123468899999998875 567789999999999999999632
Q ss_pred hHHHh--hhcCcEEecCcccchhhcCCCC----hHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhH
Q 046789 152 RIDEF--LKLASYAVCSAKFPQVWTEAPS----VPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDS 225 (336)
Q Consensus 152 ~~~~~--l~~~dil~~n~~e~~~l~~~~~----~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~ 225 (336)
.+... ++++|++++|.+|+..+++... ..+.+++.+....+++.+|+|+|++|++++..++..
T Consensus 171 ~~~~~~~~~~~~~i~~n~~E~~~l~g~~~~~~~~~~~a~~~l~~~~~~~~vvvT~G~~G~~~~~~~~~~----------- 239 (309)
T PRK10294 171 ALSAALAIGNIELVKPNQKELSALVNRDLTQPDDVRKAAQELVNSGKAKRVVVSLGPQGALGVDSENCI----------- 239 (309)
T ss_pred HHHHHHhcCCCeEECCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCCEEEEecCCCceEEEcCCccE-----------
Confidence 23333 4689999999999999887532 123444555444348999999999999997755432
Q ss_pred HHHHHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHH
Q 046789 226 LLEQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLP 305 (336)
Q Consensus 226 ~~~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~ 305 (336)
++| + ++++++|||||||+|.|||+++|++|+++++|++
T Consensus 240 -------------~~~--------------------------~---~~v~vvDttGAGDaf~ag~l~~l~~g~~~~~al~ 277 (309)
T PRK10294 240 -------------QVV--------------------------P---PPVKSQSTVGAGDSMVGAMTLKLAENASLEEMVR 277 (309)
T ss_pred -------------EEe--------------------------C---CCcccCCCcchHHHHHHHHHHHHHcCCCHHHHHH
Confidence 333 3 5678899999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCccCCCCCCCcc
Q 046789 306 FAAQVAAAGCRALGARTSLPHRTDPR 331 (336)
Q Consensus 306 ~a~~~Aa~~~~~~g~~~~~p~~~e~~ 331 (336)
+|+++|+++|++.|+.+ +.+++++
T Consensus 278 ~a~a~aa~~v~~~G~~~--~~~~~~~ 301 (309)
T PRK10294 278 FGVAAGSAATLNQGTRL--CSHDDTQ 301 (309)
T ss_pred HHHHHHHHHhcCCCCCC--CCHHHHH
Confidence 99999999999999864 5665554
No 30
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases. The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....
Probab=100.00 E-value=3.8e-36 Score=276.78 Aligned_cols=259 Identities=32% Similarity=0.467 Sum_probs=205.5
Q ss_pred ceEEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCeeEEEec
Q 046789 13 RIVVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHT 92 (336)
Q Consensus 13 ~~~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~~~~~ 92 (336)
....++||++.|+|.++++||.++.+++.+|+|.+|+.+++.|++.||+++++.+.++.+|+.++++++.+|.++...+.
T Consensus 30 ~~~~~~GG~~~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~r~~~~~~ 109 (301)
T PF00294_consen 30 SVKRSPGGAGANVAIALARLGADVALIGKVGDDFFGEIILEELKERGVDTSYIPRDGDEPTGRCLIIVDPDGERTFVFSP 109 (301)
T ss_dssp EEEEEEESHHHHHHHHHHHTTSEEEEEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEEEETTSEEEEEEEE
T ss_pred eEEEecCcHHHHHHHHHHhccCcceEEeeccCcchhhhhhhccccccccccccccccccccceeEeeecccccceeeecc
Confidence 34489999999999999999999999999999999999999999999999999887888899999999977444444443
Q ss_pred CCCCCCCCcccchhhHhhhccCCcEEEEcC-----CcHHHHH-HHHHHHHhCC--CcEEEeCCc--chHhHHHhhhcCcE
Q 046789 93 PGDPPMIPDDLSESTIFSALDGARILYLDG-----RLPDTAI-IVAQEAARKN--IPILIDTER--QRERIDEFLKLASY 162 (336)
Q Consensus 93 ~~~~~~~~e~~~~~~~~~~l~~~~~i~~~~-----~~~~~~~-~~~~~a~~~~--~~v~~d~~~--~~~~~~~~l~~~di 162 (336)
.....+..+++ ..+.+..++++++++ ..+.... .+.+.+++.+ .+++.++.. ..+.+.++++++|+
T Consensus 110 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~di 185 (301)
T PF00294_consen 110 GANSDLTPDEL----DEEAIDEADILHLSGVSLPEGIPEDLLEALAKAAKKNGPFDPVFRDPSWDDLREDLKELLPYADI 185 (301)
T ss_dssp GGGGGGGHHHH----HHHHHHTESEEEEESGHCSTTSHHHHHHHHHHHHHHTTEEEEEEEGGGSHHHHHHHHHHHHTSSE
T ss_pred ccccccccccc----cccccccccceeecccccccccccceeeecccccccccccccccccccccccchhhhhhccccch
Confidence 33224443333 346789999999999 4454444 5555666666 455666643 35788888999999
Q ss_pred EecCcccchhhcCCCC-hHHHHHHHHHc--CCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhhhcCCCCC
Q 046789 163 AVCSAKFPQVWTEAPS-VPSALVSMLLR--LPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKDDRAA 239 (336)
Q Consensus 163 l~~n~~e~~~l~~~~~-~~~~~~~~l~~--~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (336)
+++|++|+..+++... ..+.+...+.. ..+++.+++|+|++|+++++.++.. +
T Consensus 186 l~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivt~G~~G~~~~~~~~~~------------------------~ 241 (301)
T PF00294_consen 186 LKPNEEEAEALTGSKIDDPEDALAALRELQARGVKIVIVTLGEDGALYYTNDESY------------------------H 241 (301)
T ss_dssp EEEEHHHHHHHHTCSTSSHHHHHHHHHHHHHTTSSEEEEEEGGGEEEEEETTEEE------------------------E
T ss_pred hccccccccccccccccchhhhhccccccchhhhhhhhccccccCcccccccccc------------------------c
Confidence 9999999999998872 33333333222 1388999999999999999855443 3
Q ss_pred CccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhccccC
Q 046789 240 VPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRALG 319 (336)
Q Consensus 240 vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~~~~g 319 (336)
+| ++ ++.+++|+|||||+|+|||++++++++++++|+++|+++|+++|++.|
T Consensus 242 ~~--------------------------~~--~~~~vvdttGAGD~f~A~~i~~l~~~~~~~~a~~~a~~~aa~~v~~~g 293 (301)
T PF00294_consen 242 VP--------------------------PV--PPVNVVDTTGAGDAFAAGFIYGLLSGMSLEEALKFANAAAALKVQQPG 293 (301)
T ss_dssp EE--------------------------EE--SSSSSSSCTTHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTSSS
T ss_pred cc--------------------------cc--ccccccceeccchhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCC
Confidence 33 32 678899999999999999999999999999999999999999999999
Q ss_pred CccCCCCC
Q 046789 320 ARTSLPHR 327 (336)
Q Consensus 320 ~~~~~p~~ 327 (336)
+..++||.
T Consensus 294 ~~~~~p~~ 301 (301)
T PF00294_consen 294 PRSPLPTA 301 (301)
T ss_dssp SSGGTT--
T ss_pred CcCCCCCC
Confidence 99988873
No 31
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=100.00 E-value=2.6e-35 Score=271.97 Aligned_cols=266 Identities=21% Similarity=0.289 Sum_probs=208.0
Q ss_pred CCCCCCCCCCceE-----EecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEE
Q 046789 3 SDPLPPLPENRIV-----VQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTY 77 (336)
Q Consensus 3 ~~~~~p~~~~~~~-----~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~ 77 (336)
.+|++ .+++..+ ..+||++.|+|.++++||.++.++|.+|+| +|+.+++.|++.||+++++... .+|+.++
T Consensus 15 ~~~~~-~~~~~~~~~~~~~~~GG~~~N~a~~l~~lg~~~~~i~~vG~D-~g~~i~~~l~~~gI~~~~i~~~--~~t~~~~ 90 (303)
T TIGR03168 15 EVDGL-TPGEVNRVAAVRKDAGGKGINVARVLARLGAEVVATGFLGGF-TGEFIEALLAEEGIKNDFVEVK--GETRINV 90 (303)
T ss_pred EcCcc-ccCceeecCcccccCCcchhhHHHHHHHcCCCeEEEEEeCCc-hhHHHHHHHHHcCCCceEEECC--CCCEEeE
Confidence 45564 5555544 789999999999999999999999999998 7999999999999999998653 3566777
Q ss_pred EEEcCCCCeeEEEecCCCCCCCCcccch--hhHhhhccCCcEEEEcCCc-----HHHHHHHHHHHHhCCCcEEEeCCcch
Q 046789 78 VIVDNQMKTRTCIHTPGDPPMIPDDLSE--STIFSALDGARILYLDGRL-----PDTAIIVAQEAARKNIPILIDTERQR 150 (336)
Q Consensus 78 ~~~~~~g~~~~~~~~~~~~~~~~e~~~~--~~~~~~l~~~~~i~~~~~~-----~~~~~~~~~~a~~~~~~v~~d~~~~~ 150 (336)
.+.+.+| +++.+...+ ..++++++.. ..+.+.++.++++|+++.. .+....+++.++++++++++|+...
T Consensus 91 ~~~~~~g-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~g~~v~~D~~~~- 167 (303)
T TIGR03168 91 KIKESSG-EETELNEPG-PEISEEELEQLLEKLRELLASGDIVVISGSLPPGVPPDFYAQLIAIARKRGAKVILDTSGE- 167 (303)
T ss_pred EEEeCCC-CEEEEeCcC-CCCCHHHHHHHHHHHHHhccCCCEEEEeCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCcH-
Confidence 7777554 565555555 4566655543 2223458999999998763 3567788999999999999999642
Q ss_pred HhHHHhhhcCcEEecCcccchhhcCCCC----hHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHH
Q 046789 151 ERIDEFLKLASYAVCSAKFPQVWTEAPS----VPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSL 226 (336)
Q Consensus 151 ~~~~~~l~~~dil~~n~~e~~~l~~~~~----~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~ 226 (336)
.....+..++|++++|++|+..+++... ..+++.+.+... +++.+|+|+|.+|++++..++..
T Consensus 168 ~~~~~~~~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~-g~~~vviT~g~~G~~~~~~~~~~------------ 234 (303)
T TIGR03168 168 ALREALAAKPFLIKPNHEELEELFGRELKTEEEIIEAARELLDR-GAENVLVSLGADGALLVTKEGAL------------ 234 (303)
T ss_pred HHHHHHhcCCcEECCCHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CCCEEEEeecCCCcEEEeCCceE------------
Confidence 2233344679999999999999887632 122344445443 78999999999999998765432
Q ss_pred HHHHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHH
Q 046789 227 LEQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPF 306 (336)
Q Consensus 227 ~~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~ 306 (336)
++| . ++.+++|++||||+|.|+|++++++|+++++|+++
T Consensus 235 ------------~~~--------------------------~---~~~~~vDttGAGD~F~a~~~~~l~~g~~i~~a~~~ 273 (303)
T TIGR03168 235 ------------KAT--------------------------P---PKVEVVNTVGAGDSMVAGFLAGLARGLSLEEALRF 273 (303)
T ss_pred ------------Eee--------------------------C---CcceeecCcCHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 444 4 56778999999999999999999999999999999
Q ss_pred HHHHHHhhccccCCccCCCCCCCcc
Q 046789 307 AAQVAAAGCRALGARTSLPHRTDPR 331 (336)
Q Consensus 307 a~~~Aa~~~~~~g~~~~~p~~~e~~ 331 (336)
|+++|+.+|++.|+. .|++++++
T Consensus 274 A~~~aa~~~~~~G~~--~~~~~~~~ 296 (303)
T TIGR03168 274 AVAAGSAAAFSPGTG--LPDPEDVE 296 (303)
T ss_pred HHHHHHHHhcCCCcC--CCCHHHHH
Confidence 999999999999984 58888874
No 32
>cd01943 MAK32 MAK32 kinase. MAK32 is a protein found primarily in fungi that is necessary for the structural stability of L-A particles. The L-A virus particule is a specialized compartment for the transcription and replication of double-stranded RNA, known to infect yeast and other fungi. MAK32 is part of the host machinery used by the virus to multiply.
Probab=100.00 E-value=2e-35 Score=275.47 Aligned_cols=262 Identities=16% Similarity=0.105 Sum_probs=205.2
Q ss_pred CCCCCCCCCC-ceEEecCCchHHHHHHHHHc-CC--Cc--eEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEE
Q 046789 3 SDPLPPLPEN-RIVVQGGGNAGNALTCAARL-GL--NP--RIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFT 76 (336)
Q Consensus 3 ~~~~~p~~~~-~~~~~~GG~a~n~a~~l~~L-G~--~v--~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~ 76 (336)
.+|.+|.+++ .....+||++.|+|+++++| |. ++ .+++.+|+| +|+.+++.|++.||++++ ...++.+|+.+
T Consensus 9 ~~d~i~~~~~~~~~~~~GG~~~N~A~~~~~l~g~~~~~~~~~~~~vG~D-~G~~l~~~L~~~GVd~~~-~~~~~~~Tg~~ 86 (328)
T cd01943 9 IIDEIEYPDSEPVTNVLGGAGTYAILGARLFLPPPLSRSISWIVDKGSD-FPKSVEDELESWGTGMVF-RRDPGRLTTRG 86 (328)
T ss_pred EeeccccCCCCccccccCCchhhHhhceeeecCCccccceeeEEecCCC-CCHHHHHHHHhcCCceEE-EeCCCCcchhh
Confidence 4678888875 45588999999999999999 54 66 889999999 999999999999999998 66677789988
Q ss_pred EEEEcCCCCeeEEEecCCC-CCCCCcccchhhHhhhccCCcEEEEcCCcH---HHHHHHHHHHHh------CCCcEEEeC
Q 046789 77 YVIVDNQMKTRTCIHTPGD-PPMIPDDLSESTIFSALDGARILYLDGRLP---DTAIIVAQEAAR------KNIPILIDT 146 (336)
Q Consensus 77 ~~~~~~~g~~~~~~~~~~~-~~~~~e~~~~~~~~~~l~~~~~i~~~~~~~---~~~~~~~~~a~~------~~~~v~~d~ 146 (336)
+++++.+ ++|..++..+. ..+++++++. ..+..++++|+++..+ +...++++.+++ .+.++++|+
T Consensus 87 ~v~~~~~-g~r~~~~~~~~~~~~~~~~l~~----~~~~~a~~~hl~~~~~~~~~~~~~~~~~a~~~~~d~~~g~~~~~d~ 161 (328)
T cd01943 87 LNIYDGN-DRRFFKYLTPKKRIDVSDDLNS----TPLIRSSCIHLICSPERCASIVDDIINLFKLLKGNSPTRPKIVWEP 161 (328)
T ss_pred hhhcCCC-CcceeeecCccccccccccccc----ccccCCCeEEEECCHHHHHHHHHHHHHHHHhhccccCCccEEEEec
Confidence 8888765 45555555443 4777777775 4478899999988763 566678888887 788899998
Q ss_pred Ccc------hHhHHHhhhcCcEEecCcccchhhcCCCCh----HHH-HH----HHHH--cCCCCcEEEEeecCCceEEEe
Q 046789 147 ERQ------RERIDEFLKLASYAVCSAKFPQVWTEAPSV----PSA-LV----SMLL--RLPNLRFAIVTLGEDGCIMLE 209 (336)
Q Consensus 147 ~~~------~~~~~~~l~~~dil~~n~~e~~~l~~~~~~----~~~-~~----~~l~--~~~~~~~vvvt~G~~G~~~~~ 209 (336)
... ++.+..+++++|++++|++|+..+++.... .+. .. ..+. ...+.+.||+|+|++|++++.
T Consensus 162 ~~~~~~~~~~~~l~~~l~~~dil~~n~~Ea~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vvvt~G~~Ga~~~~ 241 (328)
T cd01943 162 LPDSCDPENLEDLLQALPRVDVFSPNLEEAARLLGLPTSEPSSDEEKEAVLQALLFSGILQDPGGGVVLRCGKLGCYVGS 241 (328)
T ss_pred CCcccChhhHHHHHHHhccCCEECCCHHHHHHHhCCCCCCccchhhhhhhHHHHHHHhhhccCCCEEEEEeCCCCCEEEe
Confidence 432 345788999999999999999999886432 111 11 1110 124789999999999999987
Q ss_pred e-ccCCCCchhhhhhhHHHHHHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHH
Q 046789 210 R-SVNESPELEEIDVDSLLEQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIG 288 (336)
Q Consensus 210 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~a 288 (336)
. +... .++| +++.++.+++|||||||+|+|
T Consensus 242 ~~~~~~-----------------------~~~p--------------------------~~~v~~~~vvDttGAGDaF~a 272 (328)
T cd01943 242 ADSGPE-----------------------LWLP--------------------------AYHTKSTKVVDPTGGGNSFLG 272 (328)
T ss_pred cCCCce-----------------------EecC--------------------------CccCCCCcccCCCCchHHHHH
Confidence 4 2221 2444 432223489999999999999
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHhhccccCC
Q 046789 289 AVLYALCANMSPEKMLPFAAQVAAAGCRALGA 320 (336)
Q Consensus 289 g~i~~l~~g~~l~~al~~a~~~Aa~~~~~~g~ 320 (336)
||+++|++|+++++|+++|+++|++++++.|.
T Consensus 273 gfl~~l~~g~~~~~al~~a~a~Aa~~v~~~G~ 304 (328)
T cd01943 273 GFAAGLALTKSIDEACIYGSVAASFAIEQVGL 304 (328)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999994
No 33
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=100.00 E-value=4.8e-35 Score=270.18 Aligned_cols=250 Identities=24% Similarity=0.315 Sum_probs=193.8
Q ss_pred EecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCeeEEEecCCC
Q 046789 16 VQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHTPGD 95 (336)
Q Consensus 16 ~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~ 95 (336)
..+|| +.|+|.+|++||.++.++|.+|+|.+|+.+++.|++.||+++++. .++.+|+.++.+.+. +.+++.+.....
T Consensus 37 ~~~GG-~~NvA~~la~LG~~~~~i~~vG~D~~g~~i~~~l~~~gI~~~~~~-~~~~~t~~~~~~~~~-~~~~~~~~~~~~ 113 (304)
T cd01172 37 IRLGG-AANVANNLASLGAKVTLLGVVGDDEAGDLLRKLLEKEGIDTDGIV-DEGRPTTTKTRVIAR-NQQLLRVDREDD 113 (304)
T ss_pred ecCcH-HHHHHHHHHHhCCCeEEEEEEcCCccHHHHHHHHHhCCCCcceEe-cCCCCceEEEEEecC-CcEEEEEecCCC
Confidence 67888 689999999999999999999999999999999999999999854 456668877777764 334444333222
Q ss_pred CCCCCcccch--hhHhhhccCCcEEEEcCC-----cHHHHHHHHHHHHhCCCcEEEeCCcchHhHHHhhhcCcEEecCcc
Q 046789 96 PPMIPDDLSE--STIFSALDGARILYLDGR-----LPDTAIIVAQEAARKNIPILIDTERQRERIDEFLKLASYAVCSAK 168 (336)
Q Consensus 96 ~~~~~e~~~~--~~~~~~l~~~~~i~~~~~-----~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~l~~~dil~~n~~ 168 (336)
..++.+..+. +.....+++++++++++. .++....+++.+++.++++++|+.... ...++++|++++|++
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~~v~~s~~~~~~~~~~~~~~~~~~a~~~~~~v~~D~~~~~---~~~~~~~d~l~~n~~ 190 (304)
T cd01172 114 SPLSAEEEQRLIERIAERLPEADVVILSDYGKGVLTPRVIEALIAAARELGIPVLVDPKGRD---YSKYRGATLLTPNEK 190 (304)
T ss_pred CCCCHHHHHHHHHHHHHhhccCCEEEEEcCCCCccCHHHHHHHHHHHHhcCCCEEEeCCCcc---hhhccCCcEeCCCHH
Confidence 3444333211 223456899999999754 345677888999999999999996432 156789999999999
Q ss_pred cchhhcCCC----ChHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhhhcCCCCCCcccc
Q 046789 169 FPQVWTEAP----SVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVPTCI 244 (336)
Q Consensus 169 e~~~l~~~~----~~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~ 244 (336)
|+..+++.. ...++..+.+.+..+++.+|+|+|++|++++.++... .++|
T Consensus 191 E~~~l~~~~~~~~~~~~~~~~~l~~~~g~~~vvvt~G~~G~~~~~~~~~~-----------------------~~~~--- 244 (304)
T cd01172 191 EAREALGDEINDDDELEAAGEKLLELLNLEALLVTLGEEGMTLFERDGEV-----------------------QHIP--- 244 (304)
T ss_pred HHHHHhCCCCCChHHHHHHHHHHHHHhCCCeEEEEcCCCccEEEcCCCcE-----------------------EEec---
Confidence 999988753 2233444444433489999999999999998722221 1444
Q ss_pred chhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhccccCCccC
Q 046789 245 SSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRALGARTS 323 (336)
Q Consensus 245 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~~~~g~~~~ 323 (336)
+ ++.+++|||||||+|+|||+++|++|+++++|+++|+++|+.+|++.|+.+.
T Consensus 245 -----------------------~---~~~~vvdttGAGDaf~ag~i~~l~~g~~~~~al~~a~a~Aa~~~~~~g~~~~ 297 (304)
T cd01172 245 -----------------------A---LAKEVYDVTGAGDTVIATLALALAAGADLEEAAFLANAAAGVVVGKVGTAPV 297 (304)
T ss_pred -----------------------C---CCCCCCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHhheeeecCCCCCc
Confidence 4 5678999999999999999999999999999999999999999999998754
No 34
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=100.00 E-value=9.3e-35 Score=266.57 Aligned_cols=257 Identities=21% Similarity=0.285 Sum_probs=203.0
Q ss_pred CCCCCCCCCCCceE-----EecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEE
Q 046789 2 SSDPLPPLPENRIV-----VQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFT 76 (336)
Q Consensus 2 ~~~~~~p~~~~~~~-----~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~ 76 (336)
..+|++| .++.++ ..+||++.|+|.+|++||.++.++|.+|+| +|+.+++.|++.||++.++... .+|+..
T Consensus 15 ~~~~~~~-~~~~~~~~~~~~~~GG~~~Nva~~la~lG~~v~~is~vG~D-~g~~i~~~l~~~gi~~~~~~~~--~~t~~~ 90 (289)
T cd01164 15 IELDQLQ-PGEVNRVSSTRKDAGGKGINVARVLKDLGVEVTALGFLGGF-TGDFFEALLKEEGIPDDFVEVA--GETRIN 90 (289)
T ss_pred EEcCccc-CCceeecccccccCCcchhHHHHHHHHcCCCeEEEEEccCc-hhHHHHHHHHHcCCCceEEECC--CCCEEE
Confidence 4577876 456655 899999999999999999999999999998 8999999999999999988653 447777
Q ss_pred EEEEcCCCCeeEEEecCCCCCCCCcccch--hhHhhhccCCcEEEEcCCcH-----HHHHHHHHHHHhCCCcEEEeCCcc
Q 046789 77 YVIVDNQMKTRTCIHTPGDPPMIPDDLSE--STIFSALDGARILYLDGRLP-----DTAIIVAQEAARKNIPILIDTERQ 149 (336)
Q Consensus 77 ~~~~~~~g~~~~~~~~~~~~~~~~e~~~~--~~~~~~l~~~~~i~~~~~~~-----~~~~~~~~~a~~~~~~v~~d~~~~ 149 (336)
+.+.+.+ ++++.+...+ ..+++++++. +.+.+.++.++++|+++..| +....+++.+++.++++++|+...
T Consensus 91 ~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~i~~D~~~~ 168 (289)
T cd01164 91 VKIKEED-GTETEINEPG-PEISEEELEALLEKLKALLKKGDIVVLSGSLPPGVPADFYAELVRLAREKGARVILDTSGE 168 (289)
T ss_pred EEEEeCC-CCEEEEeCCC-CCCCHHHHHHHHHHHHHhcCCCCEEEEeCCCCCCcCHHHHHHHHHHHHHcCCeEEEECChH
Confidence 7777765 4566666554 3565555543 12234578999999998876 567789999999999999999642
Q ss_pred hHhHHHhh-hcCcEEecCcccchhhcCCCC----hHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhh
Q 046789 150 RERIDEFL-KLASYAVCSAKFPQVWTEAPS----VPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVD 224 (336)
Q Consensus 150 ~~~~~~~l-~~~dil~~n~~e~~~l~~~~~----~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~ 224 (336)
.+.+++ +.+|++++|++|+..+++... ..+.+++.+.+. +.+.+++|+|++|++++..++..
T Consensus 169 --~~~~~~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~-g~~~vivt~G~~G~~~~~~~~~~---------- 235 (289)
T cd01164 169 --ALLAALAAKPFLIKPNREELEELFGRPLGDEEDVIAAARKLIER-GAENVLVSLGADGALLVTKDGVY---------- 235 (289)
T ss_pred --HHHHHHhcCCcEECCCHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CCCEEEEecCCCCCEEEcCCcEE----------
Confidence 233444 799999999999998887531 223444555553 78999999999999987654322
Q ss_pred HHHHHHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHH
Q 046789 225 SLLEQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKML 304 (336)
Q Consensus 225 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al 304 (336)
++| . ++.+++||+||||+|.|||++++++|+++++|+
T Consensus 236 --------------~~~--------------------------~---~~~~vvDttGAGDaf~a~~i~~l~~g~~~~~a~ 272 (289)
T cd01164 236 --------------RAS--------------------------P---PKVKVVSTVGAGDSMVAGFVAGLAQGLSLEEAL 272 (289)
T ss_pred --------------Eec--------------------------C---CCccccCCCChHHHHHHHHHHHHHcCCCHHHHH
Confidence 333 3 567899999999999999999999999999999
Q ss_pred HHHHHHHHhhccccCC
Q 046789 305 PFAAQVAAAGCRALGA 320 (336)
Q Consensus 305 ~~a~~~Aa~~~~~~g~ 320 (336)
++|+++|+.+|++.|+
T Consensus 273 ~~A~~~Aa~~~~~~G~ 288 (289)
T cd01164 273 RLAVAAGSATAFSPGT 288 (289)
T ss_pred HHHHHHHHHHhcCccC
Confidence 9999999999999885
No 35
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=100.00 E-value=5.1e-35 Score=270.86 Aligned_cols=266 Identities=17% Similarity=0.193 Sum_probs=199.4
Q ss_pred CCCCCCCCCC----ceEEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEE
Q 046789 3 SDPLPPLPEN----RIVVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYV 78 (336)
Q Consensus 3 ~~~~~p~~~~----~~~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~ 78 (336)
.++.+|.++. .....+||++.|+|.++++||.++.++|.+|+ .+|+.+++.|++ ||+++++.. ...|+.+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~~~~vGd-~~G~~i~~~l~~-gI~~~~~~~--~~~t~~~~~ 91 (309)
T PRK13508 16 PLDELKLDTVNRVVDVSKTAGGKGLNVTRVLSEFGENVLATGLIGG-ELGQFIAEHLDD-QIKHAFYKI--KGETRNCIA 91 (309)
T ss_pred EeCCeeeCCeEEecceeecCCchHHHHHHHHHHcCCCeEEEEEecC-hhHHHHHHHHHc-CCCceEEEC--CCCCeeeEE
Confidence 3556655554 12388999999999999999999999999995 789999999999 999987654 335777776
Q ss_pred EEcCCCCeeEEEecCCCCCCCCcccch--hhHhhhccCCcEEEEcCCcH-----HHHHHHHHHHHhCCCcEEEeCCcch-
Q 046789 79 IVDNQMKTRTCIHTPGDPPMIPDDLSE--STIFSALDGARILYLDGRLP-----DTAIIVAQEAARKNIPILIDTERQR- 150 (336)
Q Consensus 79 ~~~~~g~~~~~~~~~~~~~~~~e~~~~--~~~~~~l~~~~~i~~~~~~~-----~~~~~~~~~a~~~~~~v~~d~~~~~- 150 (336)
+++ +| .++.+...+ ..+..++... +.+.+.+.++|++|+++..+ +....+++.+++.++++++|+....
T Consensus 92 ~~~-~g-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~ 168 (309)
T PRK13508 92 ILH-EG-QQTEILEKG-PEISVQEADGFLHHFKQLLESVEVVAISGSLPAGLPVDYYAQLIELANQAGKPVVLDCSGAAL 168 (309)
T ss_pred EEe-CC-CEEEEECCC-CCCCHHHHHHHHHHHHHhccCCCEEEEeCCCCCCcCHHHHHHHHHHHHHCCCEEEEECCcHHH
Confidence 665 44 566666665 3344433321 12345689999999998764 4466788999999999999996421
Q ss_pred HhHHHhhhcCcEEecCcccchhhcCCCC--hHHHHH---HHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhH
Q 046789 151 ERIDEFLKLASYAVCSAKFPQVWTEAPS--VPSALV---SMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDS 225 (336)
Q Consensus 151 ~~~~~~l~~~dil~~n~~e~~~l~~~~~--~~~~~~---~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~ 225 (336)
..+...+..+|++++|++|+..+++.+. ..+.+. ..+.. .+.+.+|+|+|++|++++.++...
T Consensus 169 ~~~~~~~~~~dii~~n~~E~~~l~g~~~~~~~~~~~~~~~~~~~-~g~~~vvvT~G~~G~~~~~~~~~~----------- 236 (309)
T PRK13508 169 QAVLESPYKPTVIKPNIEELSQLLGKEVSEDLDELKEVLQQPLF-EGIEWIIVSLGADGAFAKHNDTFY----------- 236 (309)
T ss_pred HHHHhccCCceEEccCHHHHHHHhCCCCCCCHHHHHHHHHHHHH-cCCCEEEEecCCCceEEEeCCceE-----------
Confidence 2222234689999999999999987531 222222 22222 389999999999999887654322
Q ss_pred HHHHHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHH
Q 046789 226 LLEQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLP 305 (336)
Q Consensus 226 ~~~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~ 305 (336)
++| + ++++++|||||||+|+|||+++|++|+++++|++
T Consensus 237 -------------~~~--------------------------~---~~v~vvDttGAGDaF~Agfi~~l~~g~~~~~al~ 274 (309)
T PRK13508 237 -------------KVD--------------------------I---PKIEVVNPVGSGDSTVAGIASGLLHQEDDADLLK 274 (309)
T ss_pred -------------EEe--------------------------C---CCccccCCcChhHHHHHHHHHHHHcCCCHHHHHH
Confidence 233 3 6778999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCccCCCCCCCcc
Q 046789 306 FAAQVAAAGCRALGARTSLPHRTDPR 331 (336)
Q Consensus 306 ~a~~~Aa~~~~~~g~~~~~p~~~e~~ 331 (336)
+|+++|++++++.+... .+++++|
T Consensus 275 ~a~a~aa~~~~~~~~~~--~~~~~~~ 298 (309)
T PRK13508 275 KANVLGMLNAQEKQTGH--VNMANYD 298 (309)
T ss_pred HHHHHHHHHhcCcCcCC--CCHHHHH
Confidence 99999999999988753 5555544
No 36
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=2.3e-34 Score=260.73 Aligned_cols=243 Identities=24% Similarity=0.301 Sum_probs=193.7
Q ss_pred CCCCCCCCCCceE-----EecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEE
Q 046789 3 SDPLPPLPENRIV-----VQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTY 77 (336)
Q Consensus 3 ~~~~~p~~~~~~~-----~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~ 77 (336)
.++.+|.+++..+ ..+||++.|+|.++++||.++.++|.+|+|..|+.+++.|++ ++++..+.. .+..|+.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~GG~~~Nva~~l~~lG~~~~~i~~vG~D~~g~~i~~~l~~-~~~~~~~~~-~~~~t~~~~ 92 (265)
T cd01947 15 SLDAPPQPGGISHSSDSRESPGGGGANVAVQLAKLGNDVRFFSNLGRDEIGIQSLEELES-GGDKHTVAW-RDKPTRKTL 92 (265)
T ss_pred EecCCCCCCceeecccceeecCchHHHHHHHHHHcCCceEEEEEecCChHHHHHHHHHHh-cCCcceEEe-cCCCCceEE
Confidence 3567788876544 899999999999999999999999999999999999999999 999888765 456799999
Q ss_pred EEEcCCCCeeEEEecCCCCCCCCcccchhhHhhhccCCcEEEEcCCcHHHHHHHHHHHHhCCCcEEEeCCcc--hHhHHH
Q 046789 78 VIVDNQMKTRTCIHTPGDPPMIPDDLSESTIFSALDGARILYLDGRLPDTAIIVAQEAARKNIPILIDTERQ--RERIDE 155 (336)
Q Consensus 78 ~~~~~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~--~~~~~~ 155 (336)
++++.+| .|+..+..+ +. +++++. ..+..++++|+++..+ ..++++.+++.+ .+++|+... ...+.+
T Consensus 93 ~~~~~~g-~r~~~~~~~-~~--~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~a~~~~-~~~~d~~~~~~~~~~~~ 161 (265)
T cd01947 93 SFIDPNG-ERTITVPGE-RL--EDDLKW----PILDEGDGVFITAAAV--DKEAIRKCRETK-LVILQVTPRVRVDELNQ 161 (265)
T ss_pred EEECCCC-cceEEecCC-CC--cccCCH----hHhccCCEEEEecccc--cHHHHHHHHHhC-CeEeccCccccchhHHH
Confidence 9988765 455555443 22 233433 4578999999998763 245667777664 577888432 235678
Q ss_pred hhhcCcEEecCcccchhhcCCCChHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhhhcC
Q 046789 156 FLKLASYAVCSAKFPQVWTEAPSVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKD 235 (336)
Q Consensus 156 ~l~~~dil~~n~~e~~~l~~~~~~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (336)
+++++|++++|++|+..+.+ .+.+.. .+.+.+|+|+|++|++++.++...
T Consensus 162 ~~~~~d~~~~n~~e~~~l~~--------~~~~~~-~~~~~viit~G~~Ga~~~~~~~~~--------------------- 211 (265)
T cd01947 162 ALIPLDILIGSRLDPGELVV--------AEKIAG-PFPRYLIVTEGELGAILYPGGRYN--------------------- 211 (265)
T ss_pred HhhhCCEEEeCHHHHHHhhh--------HHHHHh-ccCCEEEEEeCCCCeEEEECCeeE---------------------
Confidence 88999999999999987764 222323 389999999999999998755432
Q ss_pred CCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhc
Q 046789 236 DRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGC 315 (336)
Q Consensus 236 ~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~ 315 (336)
++| + ++.+++|||||||+|.|||++++++|+++++|+++|+++|+.+|
T Consensus 212 ---~~~--------------------------~---~~~~vvDttGAGDaF~ag~l~~l~~g~~~~~al~~a~~~Aa~~v 259 (265)
T cd01947 212 ---HVP--------------------------A---KKAKVPDSTGAGDSFAAGFIYGLLKGWSIEEALELGAQCGAICV 259 (265)
T ss_pred ---ECC--------------------------C---CCCCCCCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 444 4 56789999999999999999999999999999999999999999
Q ss_pred cccCC
Q 046789 316 RALGA 320 (336)
Q Consensus 316 ~~~g~ 320 (336)
++.|+
T Consensus 260 ~~~G~ 264 (265)
T cd01947 260 SHFGP 264 (265)
T ss_pred hccCC
Confidence 99886
No 37
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=1.5e-34 Score=264.74 Aligned_cols=259 Identities=25% Similarity=0.347 Sum_probs=199.0
Q ss_pred CCCCCCCCCCc----eEEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEE
Q 046789 3 SDPLPPLPENR----IVVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYV 78 (336)
Q Consensus 3 ~~~~~p~~~~~----~~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~ 78 (336)
.++..|.+++. ....+||++.|+|.++++||.++.++|.+|+|++|+.+++.|++.||+++.+. ..+.+|+.+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~GG~~~Nva~~l~~lG~~~~~~~~lG~D~~g~~i~~~L~~~gI~~~~~~-~~~~~t~~~~~ 93 (288)
T cd01941 15 KVSGSLVPGTSNPGHVKQSPGGVGRNIAENLARLGVSVALLSAVGDDSEGESILEESEKAGLNVRGIV-FEGRSTASYTA 93 (288)
T ss_pred cccCccccCCCCCeeEEEccCcHHHHHHHHHHHhCCCcEEEEEEecCccHHHHHHHHHHcCCccceee-eCCCCcceEEE
Confidence 45566666543 33889999999999999999999999999999999999999999999999887 56788999989
Q ss_pred EEcCCCCeeEEEecCCCC-CCCCcccchhhHhhhccCCcEEEEcCCcH-HHHHHHHHHHHhCCCcEEEeCCcchHhHH--
Q 046789 79 IVDNQMKTRTCIHTPGDP-PMIPDDLSESTIFSALDGARILYLDGRLP-DTAIIVAQEAARKNIPILIDTERQRERID-- 154 (336)
Q Consensus 79 ~~~~~g~~~~~~~~~~~~-~~~~e~~~~~~~~~~l~~~~~i~~~~~~~-~~~~~~~~~a~~~~~~v~~d~~~~~~~~~-- 154 (336)
+++.++.+.+....++.. .++++++ +.+...+..++++++++..+ +....+++.+++.+.++++|+.... .+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~-~~~~~ 170 (288)
T cd01941 94 ILDKDGDLVVALADMDIYELLTPDFL--RKIREALKEAKPIVVDANLPEEALEYLLALAAKHGVPVAFEPTSAP-KLKKL 170 (288)
T ss_pred EECCCCCEEEEEechHhhhhCCHHHH--HHHHHHHhcCCEEEEeCCCCHHHHHHHHHhhhhcCCcEEEEccchH-Hhccc
Confidence 888766544433333211 2332222 22456689999999987765 5566788889999999999985322 122
Q ss_pred -HhhhcCcEEecCcccchhhcCCCCh----HHHHHHHHHcCCCCcEEEEeecCCceEEEee--ccCCCCchhhhhhhHHH
Q 046789 155 -EFLKLASYAVCSAKFPQVWTEAPSV----PSALVSMLLRLPNLRFAIVTLGEDGCIMLER--SVNESPELEEIDVDSLL 227 (336)
Q Consensus 155 -~~l~~~dil~~n~~e~~~l~~~~~~----~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~--~~~~~~~~~~~~~~~~~ 227 (336)
.+++++|++++|++|+..+++.... .....+.+.. .+++.+|+|+|++|++++++ +...
T Consensus 171 ~~~~~~~dii~~n~~E~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvit~G~~Ga~~~~~~~~~~~------------- 236 (288)
T cd01941 171 FYLLHAIDLLTPNRAELEALAGALIENNEDENKAAKILLL-PGIKNVIVTLGAKGVLLSSREGGVET------------- 236 (288)
T ss_pred hhhcccceEEeCCHHHHHHHhCcccCCchhHHHHHHHHHH-cCCcEEEEEeCCCcEEEEecCCCcee-------------
Confidence 5789999999999999988875421 1223334433 48999999999999999876 2221
Q ss_pred HHHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHH
Q 046789 228 EQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFA 307 (336)
Q Consensus 228 ~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a 307 (336)
.++| ++ ++.+++||+||||+|.|||+++|++|+++++|+++|
T Consensus 237 ----------~~~~--------------------------~~--~~~~~vDttGAGDaf~a~~~~~l~~g~~~~~al~~a 278 (288)
T cd01941 237 ----------KLFP--------------------------AP--QPETVVNVTGAGDAFVAGLVAGLLEGMSLDDSLRFA 278 (288)
T ss_pred ----------EEec--------------------------CC--CCccceeCCCcHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 1444 31 367899999999999999999999999999999999
Q ss_pred HHHHHhhccc
Q 046789 308 AQVAAAGCRA 317 (336)
Q Consensus 308 ~~~Aa~~~~~ 317 (336)
+++|+.+|+.
T Consensus 279 ~~~Aa~~~~~ 288 (288)
T cd01941 279 QAAAALTLES 288 (288)
T ss_pred HHHHHHHhcC
Confidence 9999999873
No 38
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=100.00 E-value=1.5e-34 Score=268.01 Aligned_cols=268 Identities=18% Similarity=0.261 Sum_probs=206.6
Q ss_pred CCCCCCCCCCCceE-----EecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEE
Q 046789 2 SSDPLPPLPENRIV-----VQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFT 76 (336)
Q Consensus 2 ~~~~~~p~~~~~~~-----~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~ 76 (336)
..++++| +++..+ .++||++.|+|.++++||.++.++|.+|+|..|+. .+.|++.||++.++.. + .+|+.+
T Consensus 18 ~~~~~~~-~~~~~~~~~~~~~~GG~~~Nva~~la~lG~~~~~i~~vG~D~~~~~-~~~l~~~gv~~~~~~~-~-~~t~~~ 93 (312)
T PRK09513 18 GFCPEIE-RGEVNLVKTTGLHAAGKGINVAKVLKDLGIDVTVGGFLGKDNQDGF-QQLFSELGIANRFQVV-Q-GRTRIN 93 (312)
T ss_pred EEcCcee-cCCeeeecceeecCCchHHHHHHHHHHcCCCeEEEEEecCccHHHH-HHHHHHcCCCccEEEC-C-CCCEEE
Confidence 3577887 566655 89999999999999999999999999999999987 5789999999877643 3 467777
Q ss_pred EEEEcCCCCeeEEEecCCCCCCCCcccch--hhHhhhccCCcEEEEcCCcH-----HHHHHHHHHHHhCCCcEEEeCCcc
Q 046789 77 YVIVDNQMKTRTCIHTPGDPPMIPDDLSE--STIFSALDGARILYLDGRLP-----DTAIIVAQEAARKNIPILIDTERQ 149 (336)
Q Consensus 77 ~~~~~~~g~~~~~~~~~~~~~~~~e~~~~--~~~~~~l~~~~~i~~~~~~~-----~~~~~~~~~a~~~~~~v~~d~~~~ 149 (336)
+.+++.++ .++.+...+ ..+.+.+++. ......++++|++|+++..+ +...++++.+++.+.++++|+...
T Consensus 94 ~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~d~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 171 (312)
T PRK09513 94 VKLTEKDG-EVTDFNFSG-FEVTPADWERFVTDSLSWLGQFDMVAVSGSLPRGVSPEAFTDWMTRLRSQCPCIIFDSSRE 171 (312)
T ss_pred EEEEeCCC-cEEEEeCCC-CCCCHHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCHHHHHHHHHHHHhcCCEEEEECChH
Confidence 77777554 455555444 3344443332 11234689999999998765 566788999999999999999642
Q ss_pred hHhHHHhhhcCcEEecCcccchhhcCCCCh----HHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhH
Q 046789 150 RERIDEFLKLASYAVCSAKFPQVWTEAPSV----PSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDS 225 (336)
Q Consensus 150 ~~~~~~~l~~~dil~~n~~e~~~l~~~~~~----~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~ 225 (336)
.....+....+++++|++|+..+++.... .+.+++.+.. .+++.+|+|+|++|++++..++..
T Consensus 172 -~~~~~~~~~~~~l~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~-~g~~~vvvt~G~~G~~~~~~~~~~----------- 238 (312)
T PRK09513 172 -ALVAGLKAAPWLVKPNRRELEIWAGRKLPELKDVIEAAHALRE-QGIAHVVISLGAEGALWVNASGEW----------- 238 (312)
T ss_pred -HHHHHhccCCeEEcCCHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCCEEEEEeCCCCcEEEeCCceE-----------
Confidence 22233446788999999999998875321 1234444544 389999999999999987654332
Q ss_pred HHHHHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHH
Q 046789 226 LLEQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLP 305 (336)
Q Consensus 226 ~~~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~ 305 (336)
++| + +.++++||+||||+|+|||+++|++|+++++|++
T Consensus 239 -------------~~~--------------------------~---~~~~~vDttGAGDaf~ag~i~~l~~g~~~~~a~~ 276 (312)
T PRK09513 239 -------------IAK--------------------------P---PACDVVSTVGAGDSMVGGLIYGLLMRESSEHTLR 276 (312)
T ss_pred -------------Eec--------------------------C---CCccccCCCChHHHHHHHHHHHHHcCCCHHHHHH
Confidence 333 3 4567999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCccCCCCCCCccc
Q 046789 306 FAAQVAAAGCRALGARTSLPHRTDPRL 332 (336)
Q Consensus 306 ~a~~~Aa~~~~~~g~~~~~p~~~e~~~ 332 (336)
+|+++|++++++.+. ++|+++|+++
T Consensus 277 ~A~a~Aa~~~~~~~~--~~~~~~e~~~ 301 (312)
T PRK09513 277 LATAVSALAVSQSNV--GITDRPQLAA 301 (312)
T ss_pred HHHHHHHHHhhCCCC--CCCCHHHHHH
Confidence 999999999999874 6799988864
No 39
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-33 Score=254.32 Aligned_cols=254 Identities=22% Similarity=0.312 Sum_probs=215.4
Q ss_pred EecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCeeEEEecCCC
Q 046789 16 VQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHTPGD 95 (336)
Q Consensus 16 ~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~ 95 (336)
.++||+|+|+|..|+.||.+++..|.+|. ..|+.+.+.|++.|+...++.+. ..|+.++.+.+.+++..+.++.+|
T Consensus 33 ~~aGGKGINVa~vL~~lG~~~~a~GflGg-~tg~~~~~~l~~~gi~~~fv~v~--g~TRinvki~~~~~~~~Tein~~G- 108 (310)
T COG1105 33 KTAGGKGINVARVLKDLGIPVTALGFLGG-FTGEFFVALLKDEGIPDAFVEVK--GDTRINVKILDEEDGEETEINFPG- 108 (310)
T ss_pred ecCCCCceeHHHHHHHcCCCceEEEecCC-ccHHHHHHHHHhcCCCceEEEcc--CCCeeeEEEEecCCCcEEEecCCC-
Confidence 89999999999999999999999999999 58999999999999999999874 559999999988677799999998
Q ss_pred CCCCCcccch--hhHhhhccCCcEEEEcCCcH-----HHHHHHHHHHHhCCCcEEEeCCcchHhHHHhh-hcCcEEecCc
Q 046789 96 PPMIPDDLSE--STIFSALDGARILYLDGRLP-----DTAIIVAQEAARKNIPILIDTERQRERIDEFL-KLASYAVCSA 167 (336)
Q Consensus 96 ~~~~~e~~~~--~~~~~~l~~~~~i~~~~~~~-----~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~l-~~~dil~~n~ 167 (336)
++++++++.. +.+...++..|+++++|+.| +.+.++++.+++.++++++|... +.+...+ ..+.++++|.
T Consensus 109 p~is~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~Sg--~~L~~~L~~~P~lIKPN~ 186 (310)
T COG1105 109 PEISEAELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVILDTSG--EALLAALEAKPWLIKPNR 186 (310)
T ss_pred CCCCHHHHHHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCeEEEECCh--HHHHHHHccCCcEEecCH
Confidence 8899888887 44555689999999999865 68889999999999999999953 3444555 4588999999
Q ss_pred ccchhhcCCCCh----HHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhhhcCCCCCCccc
Q 046789 168 KFPQVWTEAPSV----PSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVPTC 243 (336)
Q Consensus 168 ~e~~~l~~~~~~----~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~ 243 (336)
+|...|++.+.. ....++.+.. .|++.|||++|.+|+++.+++..+
T Consensus 187 ~EL~~~~g~~~~~~~d~i~~a~~l~~-~g~~~ViVSlG~~Gal~~~~~~~~----------------------------- 236 (310)
T COG1105 187 EELEALFGRELTTLEDVIKAARELLA-EGIENVIVSLGADGALLVTAEGVY----------------------------- 236 (310)
T ss_pred HHHHHHhCCCCCChHHHHHHHHHHHH-CCCCEEEEEecCcccEEEccCCeE-----------------------------
Confidence 999999987532 2333444444 399999999999999999887654
Q ss_pred cchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhccccCCccC
Q 046789 244 ISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRALGARTS 323 (336)
Q Consensus 244 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~~~~g~~~~ 323 (336)
+ +.+|+.++++++||||+|.|||++++++++++++++++|+++|+.++.+.+. .
T Consensus 237 ---------------------~---a~~p~~~vvstVGAGDs~VAGf~~~~~~~~~~e~~l~~avA~g~a~~~~~~~--~ 290 (310)
T COG1105 237 ---------------------F---ASPPKVQVVSTVGAGDSMVAGFLAGLLKGKSLEEALRFAVACGAAAASQKGT--G 290 (310)
T ss_pred ---------------------E---EeCCCcceecCcCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCCC--C
Confidence 1 2237799999999999999999999999999999999999999999999886 4
Q ss_pred CCCCCCcc
Q 046789 324 LPHRTDPR 331 (336)
Q Consensus 324 ~p~~~e~~ 331 (336)
.|++++++
T Consensus 291 ~~~~~~~~ 298 (310)
T COG1105 291 IPDLDQLK 298 (310)
T ss_pred CCCHHHHH
Confidence 57776443
No 40
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=100.00 E-value=7.2e-34 Score=263.19 Aligned_cols=254 Identities=17% Similarity=0.220 Sum_probs=192.6
Q ss_pred EecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCeeEEEecCCC
Q 046789 16 VQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHTPGD 95 (336)
Q Consensus 16 ~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~ 95 (336)
..+||++.|+|.++++||.++.++|.+|+ ++|+.+++.|++.||+++++... ..|+.+..+++ +| .++.++.++.
T Consensus 32 ~~~GG~~~NvA~~la~LG~~v~~i~~vG~-~~G~~i~~~l~~~GV~~~~~~~~--~~t~~~~~~~~-~g-~~~~~~~~~~ 106 (309)
T TIGR01231 32 KTAGGKGLNVTRVLAQVGDPVLASGFLGG-KLGEFIEKELDHSDIKHAFYKIS--GETRNCIAILH-EG-QQTEILEQGP 106 (309)
T ss_pred ecCCccHHHHHHHHHHcCCCeEEEEEecC-hhHHHHHHHHHHcCCceeEEECC--CCCEEeEEEEe-CC-CEEEEeCCCC
Confidence 78999999999999999999999999996 59999999999999999988653 34666666665 33 4666666652
Q ss_pred CCCCCcccch--hhHhhhccCCcEEEEcCCcH-----HHHHHHHHHHHhCCCcEEEeCCcch-HhHHHhhhcCcEEecCc
Q 046789 96 PPMIPDDLSE--STIFSALDGARILYLDGRLP-----DTAIIVAQEAARKNIPILIDTERQR-ERIDEFLKLASYAVCSA 167 (336)
Q Consensus 96 ~~~~~e~~~~--~~~~~~l~~~~~i~~~~~~~-----~~~~~~~~~a~~~~~~v~~d~~~~~-~~~~~~l~~~dil~~n~ 167 (336)
.+.++.... +.+...+++++++|+++..+ .....+++.+++.++++++|+.... ..+...++++|++++|.
T Consensus 107 -~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~dil~~n~ 185 (309)
T TIGR01231 107 -EISNQEAAGFLKHFEQLLEKVEVVAISGSLPKGLPQDYYAQIIERCQNKGVPVVLDCSGATLQTVLENPAKPTVIKPNI 185 (309)
T ss_pred -CCCHHHHHHHHHHHHHHhccCCEEEEECCCCCCcCHHHHHHHHHHHHhCCCeEEEECChHHHHHHHhccCCCeEEcCCH
Confidence 333221111 12345578999999998753 4666889999999999999996421 22334457899999999
Q ss_pred ccchhhcCCCC--hHHHH---HHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhhhcCCCCCCcc
Q 046789 168 KFPQVWTEAPS--VPSAL---VSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVPT 242 (336)
Q Consensus 168 ~e~~~l~~~~~--~~~~~---~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~ 242 (336)
+|+..+++.+. ..+.+ .+.+.. .+++.+++|+|++|++++..+... ++|
T Consensus 186 ~E~~~l~g~~~~~~~~~~~~~~~~~~~-~g~~~vivT~G~~G~~~~~~~~~~------------------------~~~- 239 (309)
T TIGR01231 186 EELSQLLNQELTEDLESLKQALSQPLF-SGIEWIIVSLGAQGAFAKHGHTFY------------------------KVN- 239 (309)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHH-cCCCEEEEccCCCceEEEeCCeeE------------------------Eee-
Confidence 99999987532 22222 222222 388999999999999998654321 333
Q ss_pred ccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhccccCCcc
Q 046789 243 CISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRALGART 322 (336)
Q Consensus 243 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~~~~g~~~ 322 (336)
. ++.+++|||||||+|+|||+++|++|+++++|+++|+++|++++++.++-.
T Consensus 240 -------------------------~---~~v~vvDttGAGDaF~agfl~~l~~g~~~~~a~~~a~a~aa~~~~~~~~~~ 291 (309)
T TIGR01231 240 -------------------------I---PTISVVNPVGSGDSTVAGITSALLNHESDHDLLKKANTLGMLNAQEAQTGH 291 (309)
T ss_pred -------------------------C---CccCcCCCcchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCC
Confidence 3 567899999999999999999999999999999999999999998877643
Q ss_pred CCCCCCCcc
Q 046789 323 SLPHRTDPR 331 (336)
Q Consensus 323 ~~p~~~e~~ 331 (336)
.+++++|
T Consensus 292 --~~~~~~~ 298 (309)
T TIGR01231 292 --VNLNNYD 298 (309)
T ss_pred --CCHHHHH
Confidence 5554443
No 41
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=100.00 E-value=2.2e-33 Score=253.75 Aligned_cols=246 Identities=23% Similarity=0.245 Sum_probs=188.4
Q ss_pred CCCCCCCCCCceEEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcC
Q 046789 3 SDPLPPLPENRIVVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDN 82 (336)
Q Consensus 3 ~~~~~p~~~~~~~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~ 82 (336)
.+|..|..++ .++||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++.||+++++.+.+ .+|+.+++.++
T Consensus 10 ~~D~~~~~~~---~~~GG~~~NvA~~l~~lG~~~~~is~vG~D~~g~~i~~~l~~~gI~~~~~~~~~-~~t~~~~~~~~- 84 (260)
T PRK09813 10 CVDIYPQLGK---AFSGGNAVNVAVYCTRYGIQPGCITWVGDDDYGTKLKQDLARMGVDISHVHTKH-GVTAQTQVELH- 84 (260)
T ss_pred eeeecccCCc---cccCccHHHHHHHHHHcCCcceEEEEecCcHHHHHHHHHHHHcCCcchheeeec-CCCceEEEEEe-
Confidence 4566666543 789999999999999999999999999999999999999999999999997754 46777777775
Q ss_pred CCCeeEEE-ecCCC-CCCCCcccchhhHhhhccCCcEEEEcCCcHHHHHHHHHHHHhCCCcEEEeCCcc--hHhHHHhhh
Q 046789 83 QMKTRTCI-HTPGD-PPMIPDDLSESTIFSALDGARILYLDGRLPDTAIIVAQEAARKNIPILIDTERQ--RERIDEFLK 158 (336)
Q Consensus 83 ~g~~~~~~-~~~~~-~~~~~e~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~--~~~~~~~l~ 158 (336)
+ +.|++. +..+. ..+..++.. .+.++.++++|++... ...++++.++++++++++|+... .+.+..+++
T Consensus 85 ~-~~r~~~~~~~~~~~~~~~~~~~----~~~l~~~~~v~~~~~~--~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~~~~ 157 (260)
T PRK09813 85 D-NDRVFGDYTEGVMADFALSEED----YAWLAQYDIVHAAIWG--HAEDAFPQLHAAGKLTAFDFSDKWDSPLWQTLVP 157 (260)
T ss_pred C-CcEEeeccCCCcccccccCHHH----HHHHHhCCEEEEeccc--hHHHHHHHHHHcCCeEEEEcCCCccHHHHHHhCC
Confidence 3 345544 33331 233222221 2457899999996432 23467777888999999999532 245678889
Q ss_pred cCcEEecCcccchhhcCCCChHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhhhcCCCC
Q 046789 159 LASYAVCSAKFPQVWTEAPSVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKDDRA 238 (336)
Q Consensus 159 ~~dil~~n~~e~~~l~~~~~~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (336)
++|+++.|+++.. ...+.+.+.+... +++.+|+|+|++|++++.+++..
T Consensus 158 ~~d~~~~~~~~~~------~~~~~~~~~~~~~-g~~~viit~G~~Ga~~~~~~~~~------------------------ 206 (260)
T PRK09813 158 HLDYAFASAPQED------EFLRLKMKAIVAR-GAGVVIVTLGENGSIAWDGAQFW------------------------ 206 (260)
T ss_pred ceeEEEecCCcch------HHHHHHHHHHHHc-CCCEEEEEECCCceEEEECCEEE------------------------
Confidence 9999998865421 1123344444443 88999999999999998765432
Q ss_pred CCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhcccc
Q 046789 239 AVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRAL 318 (336)
Q Consensus 239 ~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~~~~ 318 (336)
++| + .+.+++|||||||+|.|||++++++|+++++|+.+|+++|++++++.
T Consensus 207 ~~~--------------------------~---~~~~~vDttGAGDaF~ag~i~~~~~g~~~~~al~~a~~~aa~~~~~~ 257 (260)
T PRK09813 207 RQA--------------------------P---EPVTVVDTMGAGDSFIAGFLCGWLAGMTLPQAMAQGTACAAKTIQYH 257 (260)
T ss_pred ecC--------------------------C---cccCCCCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcc
Confidence 444 4 45678999999999999999999999999999999999999999998
Q ss_pred CC
Q 046789 319 GA 320 (336)
Q Consensus 319 g~ 320 (336)
|+
T Consensus 258 G~ 259 (260)
T PRK09813 258 GA 259 (260)
T ss_pred CC
Confidence 86
No 42
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=100.00 E-value=8.2e-32 Score=263.37 Aligned_cols=254 Identities=22% Similarity=0.216 Sum_probs=194.4
Q ss_pred EecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCeeEEEecC--
Q 046789 16 VQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHTP-- 93 (336)
Q Consensus 16 ~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~~~~~~-- 93 (336)
..+|| +.|+|.+|++||.++.++|.+|+|.+|+.+++.|++.||+++++.. ++.+|+.++.+++.+ . ....+..
T Consensus 48 ~~~GG-a~NvA~~la~LG~~v~~i~~vG~D~~g~~i~~~L~~~gI~~~~v~~-~~~~T~~~~~~~~~~-~-~~~~~~~~~ 123 (473)
T PRK11316 48 ERPGG-AANVAMNIASLGAQARLVGLTGIDEAARALSKLLAAVGVKCDFVSV-PTHPTITKLRVLSRN-Q-QLIRLDFEE 123 (473)
T ss_pred ecCcH-HHHHHHHHHHcCCcEEEEEEEcCCHHHHHHHHHHHHcCCceeEEEc-CCCCCCeeEEEEeCC-c-eEEeccccc
Confidence 67899 6999999999999999999999999999999999999999998866 567788888887643 2 2222221
Q ss_pred CCCCCCCcccchhhHhhhccCCcEEEEcCCcH---HHHHHHHHHHHhCCCcEEEeCCcchHhHHHhhhcCcEEecCcccc
Q 046789 94 GDPPMIPDDLSESTIFSALDGARILYLDGRLP---DTAIIVAQEAARKNIPILIDTERQRERIDEFLKLASYAVCSAKFP 170 (336)
Q Consensus 94 ~~~~~~~e~~~~~~~~~~l~~~~~i~~~~~~~---~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~l~~~dil~~n~~e~ 170 (336)
....+.++++.. .+...+++++++++++... +....+++.+++.++++++|+.... ...++.+|++++|.+|+
T Consensus 124 ~~~~~~~~~l~~-~~~~~l~~~~~v~is~~~~~~~~~~~~~~~~~k~~g~~vv~Dp~~~~---~~~~~~~dil~pN~~Ea 199 (473)
T PRK11316 124 GFEGVDPQPLLE-RIEQALPSIGALVLSDYAKGALASVQAMIQLARKAGVPVLIDPKGTD---FERYRGATLLTPNLSEF 199 (473)
T ss_pred CCCchhHHHHHH-HHHHHhccCCEEEEecCCccchhHHHHHHHHHHhcCCeEEEeCCCCC---ccccCCCeEECcCHHHH
Confidence 111223332221 2345689999999976542 4566888899999999999996321 24467899999999999
Q ss_pred hhhcCCCChHH---HHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhhhcCCCCCCccccchh
Q 046789 171 QVWTEAPSVPS---ALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVPTCISSL 247 (336)
Q Consensus 171 ~~l~~~~~~~~---~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~ 247 (336)
..+++.....+ ..++.+....+.+.+++|+|++|++++.++... .++|
T Consensus 200 ~~l~g~~~~~~~~~~~~~~l~~~~g~~~vvVT~G~~G~~~~~~~~~~-----------------------~~~~------ 250 (473)
T PRK11316 200 EAVVGKCKDEAELVEKGMKLIADYDLSALLVTRSEQGMTLLQPGKAP-----------------------LHLP------ 250 (473)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHhcCCCEEEEEecCCCcEEEecCCce-----------------------EEec------
Confidence 99988532222 223333333489999999999999888755421 1333
Q ss_pred hhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhccccCCccCCCCC
Q 046789 248 ETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRALGARTSLPHR 327 (336)
Q Consensus 248 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~~~~g~~~~~p~~ 327 (336)
. ++.+++||+||||+|.|||+++|++|+++++|+++|+++|++++++.|+.+ ++.
T Consensus 251 --------------------~---~~v~vvDttGAGDaF~aa~~~~l~~g~~~~~al~~A~a~Aa~~v~~~G~~~--~~~ 305 (473)
T PRK11316 251 --------------------T---QAREVYDVTGAGDTVISVLAAALAAGNSLEEACALANAAAGVVVGKLGTST--VSP 305 (473)
T ss_pred --------------------C---cCCCCCCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcccCCCcc--CCH
Confidence 4 567889999999999999999999999999999999999999999999864 677
Q ss_pred CCcc
Q 046789 328 TDPR 331 (336)
Q Consensus 328 ~e~~ 331 (336)
++++
T Consensus 306 ~~l~ 309 (473)
T PRK11316 306 IELE 309 (473)
T ss_pred HHHH
Confidence 7665
No 43
>cd01946 ribokinase_group_C Ribokinase-like subgroup C. Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=1.5e-31 Score=243.93 Aligned_cols=253 Identities=16% Similarity=0.218 Sum_probs=187.6
Q ss_pred CCCCCCCCCceEEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCC
Q 046789 4 DPLPPLPENRIVVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQ 83 (336)
Q Consensus 4 ~~~~p~~~~~~~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~ 83 (336)
+|.++.+.......+||++.|+|.++++|| ++.+++.+|+| +|+.+++.|++.||+++++.+.++.+|.. ....
T Consensus 10 ~D~~~~~~~~~~~~~GG~a~N~a~~la~lg-~v~~i~~vG~D-~g~~~~~~l~~~gi~~~~v~~~~~~~t~~---~~~~- 83 (277)
T cd01946 10 FDAIETPFGKVDKALGGSATYFSLSASYFT-DVRLVGVVGED-FPEEDYKLLNSHNIVTLGLLSKEDGKTFH---WAGR- 83 (277)
T ss_pred eeeecCCCceeeeccCchHHHHHHHHHHhc-cceeEEeccCc-ChHHHHHHHHhccCcceeEEEecCCCeEE---EeeE-
Confidence 344444444456889999999999999998 79999999999 89999999999999999998766555521 1110
Q ss_pred CCeeEEEecCCCC--CCC-CcccchhhHhhhccCCcEEEEcCCcHHHHHHHHHHHHhCCCcEEEeCCc-----chHhHHH
Q 046789 84 MKTRTCIHTPGDP--PMI-PDDLSESTIFSALDGARILYLDGRLPDTAIIVAQEAARKNIPILIDTER-----QRERIDE 155 (336)
Q Consensus 84 g~~~~~~~~~~~~--~~~-~e~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~-----~~~~~~~ 155 (336)
........+.. .+. .+++.. .+.+.++.++++|+++..++....+++.+++. .++++|+.. ..+.+.+
T Consensus 84 --~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~v~~D~~~~~~~~~~~~~~~ 159 (277)
T cd01946 84 --YHYDLNEADTLDTDLNVFADFDP-QLPEHYKDSEFVFLGNIAPELQREVLEQVKDP-KLVVMDTMNFWISIKPEKLKK 159 (277)
T ss_pred --ehhhcccccchhhhhhHHhhcCC-CChHHhhcCCEEEECCCCHHHHHHHHHHHHhC-CEEEEccHHHhhhhhHHHHHH
Confidence 00000111000 000 011111 12345789999999988888888888888877 889999842 2345778
Q ss_pred hhhcCcEEecCcccchhhcCCCChHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhhhcC
Q 046789 156 FLKLASYAVCSAKFPQVWTEAPSVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKD 235 (336)
Q Consensus 156 ~l~~~dil~~n~~e~~~l~~~~~~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (336)
+++++|++++|++|+..+++..+. +++.+.+.. .+++.+|+|+|.+|++++.+++..
T Consensus 160 ~l~~~d~~~~n~~E~~~l~g~~~~-~~~~~~l~~-~g~~~vvvt~G~~G~~~~~~~~~~--------------------- 216 (277)
T cd01946 160 VLAKVDVVIINDGEARQLTGAANL-VKAARLILA-MGPKALIIKRGEYGALLFTDDGYF--------------------- 216 (277)
T ss_pred HhccCCEEeCCHHHHHHHhCCchH-HHHHHHHHH-cCCCEEEEecCCCcEEEEECCceE---------------------
Confidence 899999999999999999886443 344454554 389999999999999988755432
Q ss_pred CCCCCccccchhhhhhhccCcccccceeeecccccCCCC-CccccCCchhhhHHHHHHHHHhCC-----ChhhHHHHHHH
Q 046789 236 DRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPS-ELVDTTGAGDAFIGAVLYALCANM-----SPEKMLPFAAQ 309 (336)
Q Consensus 236 ~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~vvd~tGAGDaF~ag~i~~l~~g~-----~l~~al~~a~~ 309 (336)
++| . ++. +++|||||||+|.|||+++|++++ ++++|+++|++
T Consensus 217 ---~~~--------------------------~---~~~~~~vDttGAGDaF~Agfl~~l~~~~~~~~~~~~~a~~~a~~ 264 (277)
T cd01946 217 ---AAP--------------------------A---YPLESVFDPTGAGDTFAGGFIGYLASQKDTSEANMRRAIIYGSA 264 (277)
T ss_pred ---EcC--------------------------C---cccCccCCCCCchHHHHHHHHHHHHhCCCcchhhHHHHHHHhHH
Confidence 333 4 333 488999999999999999999874 68999999999
Q ss_pred HHHhhccccCCc
Q 046789 310 VAAAGCRALGAR 321 (336)
Q Consensus 310 ~Aa~~~~~~g~~ 321 (336)
+|+++|++.|+.
T Consensus 265 ~aa~~~~~~G~~ 276 (277)
T cd01946 265 MASFCVEDFGTK 276 (277)
T ss_pred HHhhhhhhcCCC
Confidence 999999999864
No 44
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=99.97 E-value=7.2e-31 Score=233.28 Aligned_cols=261 Identities=25% Similarity=0.372 Sum_probs=213.7
Q ss_pred ceEEecCCchHHHHHHHHHcCC---CceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCeeEE
Q 046789 13 RIVVQGGGNAGNALTCAARLGL---NPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTC 89 (336)
Q Consensus 13 ~~~~~~GG~a~n~a~~l~~LG~---~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~~ 89 (336)
.+...+||++.|.++.+++++- .+.++|.+|.|.+|+.+++.+++.||++.+... .+.+|+.|.++++.+ +|+.
T Consensus 57 ~~~~~AGGs~qNt~R~aq~~~~~p~~~~f~GsvG~Dk~ge~l~~~~~~aGv~~~yq~~-~d~~TGtCavli~~~--nRSL 133 (343)
T KOG2854|consen 57 NVKYSAGGSAQNTLRIAQWLLQQPGATVFFGSVGKDKFGELLKSKARAAGVNVHYQVK-EDGPTGTCAVLITGD--NRSL 133 (343)
T ss_pred cEEecCCchhHHHHHHHHHHccCCCceEEEeeccCchHHHHHHHHHHhcCceEEEEec-cCCCCceEEEEEeCC--Ccch
Confidence 4558999999999999999987 799999999999999999999999999998855 789999999999755 4777
Q ss_pred EecCC-CCCCCCcccchhhHhhhccCCcEEEEcCCc----HHHHHHHHHHHHhCCCcEEEeCC------cchHhHHHhhh
Q 046789 90 IHTPG-DPPMIPDDLSESTIFSALDGARILYLDGRL----PDTAIIVAQEAARKNIPILIDTE------RQRERIDEFLK 158 (336)
Q Consensus 90 ~~~~~-~~~~~~e~~~~~~~~~~l~~~~~i~~~~~~----~~~~~~~~~~a~~~~~~v~~d~~------~~~~~~~~~l~ 158 (336)
+..-+ ++.++.+++.+...+..+..+.++|+.|.+ |+.++.+.+.+.+.+.+.+.+.. ...+.+...++
T Consensus 134 ~anLgAAn~f~~dhl~~~~~~~lveka~v~yv~Gffltv~p~ai~~v~qh~~e~~r~~~lnlsapfI~q~~~~~l~~v~~ 213 (343)
T KOG2854|consen 134 CANLGAANCFKVDHLDKEENWALVEKAKVFYVAGFFLTVSPDAIRKVAQHAAENNRVFTLNLSAPFISQFFKDALDKVLP 213 (343)
T ss_pred hhccchhhccCHHHhcchhhhhhhhheeEEEEEEEEEEeChHHHHHHHHHHHHhcchhheeccchhHHHHHHHHHHhhcC
Confidence 76544 468999999776677789999999999984 78889999999999988877773 35567788899
Q ss_pred cCcEEecCcccchhhcCCC-----ChHHHHHHHHHcC-----CCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHH
Q 046789 159 LASYAVCSAKFPQVWTEAP-----SVPSALVSMLLRL-----PNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLE 228 (336)
Q Consensus 159 ~~dil~~n~~e~~~l~~~~-----~~~~~~~~~l~~~-----~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~ 228 (336)
++|+++.|++|++.+.... +..+ .+..+... ...+.+++|.|..++++...+...
T Consensus 214 y~DiifgNe~EA~af~~~~~~~t~dv~e-ia~~~~~~~k~~~~~~r~vvit~g~~~~i~~~~~~v~-------------- 278 (343)
T KOG2854|consen 214 YADIIFGNEDEAAAFARAHGWETKDVKE-IALKLSALPKVNGTRPRTVVITQGPDPVIVAEDGKVT-------------- 278 (343)
T ss_pred cceEEEcCHHHHHHHHHhhCCcccchHH-HhhHhhccccccccccceEEEccCCCceEEecCCceE--------------
Confidence 9999999999998776532 2212 11111111 346789999999999998774443
Q ss_pred HHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHH
Q 046789 229 QLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAA 308 (336)
Q Consensus 229 ~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~ 308 (336)
.+| ..+.+..+++||+||||+|.+||+++|.+|.++++|++.|+
T Consensus 279 ----------~~~--------------------------v~~~~~~~ivDtnGAGDaFvgGFl~~l~qg~~l~~cir~g~ 322 (343)
T KOG2854|consen 279 ----------AYP--------------------------VLPLPVEEIVDTNGAGDAFVGGFLSQLVQGKSLEECIRAGS 322 (343)
T ss_pred ----------Eec--------------------------cccccceeeeeCCCchHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 333 44447788999999999999999999999999999999999
Q ss_pred HHHHhhccccCCccCCCCCCC
Q 046789 309 QVAAAGCRALGARTSLPHRTD 329 (336)
Q Consensus 309 ~~Aa~~~~~~g~~~~~p~~~e 329 (336)
.+|+.++...|+. +|++-+
T Consensus 323 ~aa~~vi~~~G~~--~p~~~~ 341 (343)
T KOG2854|consen 323 YAASHVIRRVGCT--VPEKPD 341 (343)
T ss_pred HHhhheeeccCCC--CCCCCC
Confidence 9999999999974 566544
No 45
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.97 E-value=3.5e-30 Score=231.86 Aligned_cols=237 Identities=24% Similarity=0.238 Sum_probs=175.5
Q ss_pred CCCCCCCCCceEEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCC
Q 046789 4 DPLPPLPENRIVVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQ 83 (336)
Q Consensus 4 ~~~~p~~~~~~~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~ 83 (336)
+|.++.++ .....+||++.|+|.++++||.++.++|.+|+|..|+ ++.|++.||++..+ ....|+.+++.++.+
T Consensus 10 iD~~~~~~-~~~~~~GG~~~Nva~~la~lG~~~~~i~~vG~D~~g~--~~~l~~~gv~~~~~---~~~~t~~~~~~~~~~ 83 (254)
T cd01937 10 IDEIVTNG-SGVVKPGGPATYASLTLSRLGLTVKLVTKVGRDYPDK--WSDLFDNGIEVISL---LSTETTTFELNYTNE 83 (254)
T ss_pred EEEEecCC-ceEEecCchhhhHHHHHHHhCCCeEEEEeeCCCchHH--HHHHHHCCcEEEEe---cCCCeEEEEEEecCC
Confidence 34444443 3468899999999999999999999999999999998 68899999997543 334566667777665
Q ss_pred CCeeEEEecCCCC-CCCCcccchhhHhhhccCCcEEEEcCCcHHHHHHHHHHHHhCCCcEEEeCCcch-------HhHHH
Q 046789 84 MKTRTCIHTPGDP-PMIPDDLSESTIFSALDGARILYLDGRLPDTAIIVAQEAARKNIPILIDTERQR-------ERIDE 155 (336)
Q Consensus 84 g~~~~~~~~~~~~-~~~~e~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~-------~~~~~ 155 (336)
+.+++..+ .+.. ..... ...+.++|++|+++..++....+.+.+ +++++|+...+ ..+.+
T Consensus 84 ~~~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~D~~~~~~~~~~~~~~~~~ 151 (254)
T cd01937 84 GRTRTLLA-KCAAIPDTES-------PLSTITAEIVILGPVPEEISPSLFRKF----AFISLDAQGFLRRANQEKLIKCV 151 (254)
T ss_pred CCeeeeec-cccCCccccc-------ccccCcccEEEECCCcchhcHHHHhhh----hheeEccccceeeccccchHHHh
Confidence 55544443 3322 21111 134788999999877555444444333 78999995311 12457
Q ss_pred hhhcCcEEecCcccchhhcCCCChHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhhhcC
Q 046789 156 FLKLASYAVCSAKFPQVWTEAPSVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKD 235 (336)
Q Consensus 156 ~l~~~dil~~n~~e~~~l~~~~~~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (336)
+++++|++++|++|+..+ .+ .+.+...+.. .+++.+|+|+|++|++++.+++..
T Consensus 152 ~l~~~di~~~n~~E~~~~---~~-~~~~~~~l~~-~g~~~vvvt~g~~g~~~~~~~~~~--------------------- 205 (254)
T cd01937 152 ILKLHDVLKLSRVEAEVI---ST-PTELARLIKE-TGVKEIIVTDGEEGGYIFDGNGKY--------------------- 205 (254)
T ss_pred hcccCcEEEEcHHHHhhc---CC-HHHHHHHHHH-cCCCEEEEeeCCcceEEEECCccE---------------------
Confidence 889999999999999873 22 3344455544 488999999999999998765432
Q ss_pred CCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhc
Q 046789 236 DRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGC 315 (336)
Q Consensus 236 ~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~ 315 (336)
++| + ++.+++|||||||+|.|||++++++|+++++|+.+|+++|++++
T Consensus 206 ---~~~--------------------------~---~~~~~vdt~GAGD~f~a~~~~~l~~g~~~~~a~~~a~~~aa~~i 253 (254)
T cd01937 206 ---TIP--------------------------A---SKKDVVDPTGAGDVFLAAFLYSRLSGKDIKEAAEFAAAAAAKFI 253 (254)
T ss_pred ---Ecc--------------------------c---cCceeccCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 333 4 45678999999999999999999999999999999999999987
Q ss_pred c
Q 046789 316 R 316 (336)
Q Consensus 316 ~ 316 (336)
+
T Consensus 254 ~ 254 (254)
T cd01937 254 E 254 (254)
T ss_pred C
Confidence 5
No 46
>PLN02630 pfkB-type carbohydrate kinase family protein
Probab=99.97 E-value=2.8e-30 Score=240.19 Aligned_cols=238 Identities=16% Similarity=0.203 Sum_probs=183.3
Q ss_pred CCCCCCCCCceEEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCC
Q 046789 4 DPLPPLPENRIVVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQ 83 (336)
Q Consensus 4 ~~~~p~~~~~~~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~ 83 (336)
+|.+...++.....+||+++|+|.++++||.++.++|.+|+|.. .+++...+.. ++.+|+.++++++.+
T Consensus 22 ~D~i~~~g~~~~~~~GG~a~N~A~alarLG~~~~lis~VG~D~~----------~~v~~~~~~~-~~~~T~~~~~~~~~g 90 (335)
T PLN02630 22 HDVLIQNGSVTAESLGGAASFISNVLDALSVECELVSKVGPDFL----------YQVSHPPIVI-PDSKTTEFHADFDQG 90 (335)
T ss_pred eeEEEeCCcEEEEecCcHHHHHHHHHHHcCCceEEEEEecCCcc----------ccccccceec-CCCCceEEEEEEcCC
Confidence 34444445555689999999999999999999999999999952 3677665544 667788888887763
Q ss_pred ----CCeeEEEecCCC-CCCCCcccchhhHhhhccCCcEEEEcCCc-HHHHHHHHHHHHh-----CCCcEEEeCCcch--
Q 046789 84 ----MKTRTCIHTPGD-PPMIPDDLSESTIFSALDGARILYLDGRL-PDTAIIVAQEAAR-----KNIPILIDTERQR-- 150 (336)
Q Consensus 84 ----g~~~~~~~~~~~-~~~~~e~~~~~~~~~~l~~~~~i~~~~~~-~~~~~~~~~~a~~-----~~~~v~~d~~~~~-- 150 (336)
++.+.++...++ ..+++++++. ..+..++++++.+.. ++....+++.++. .+..+++|+...+
T Consensus 91 ~~~~~~e~~i~~~~ga~~~l~~~di~~----~~~~~~~~~~l~~ei~~e~~~~~~~~a~~v~~D~~g~~~~~Dp~~~~~~ 166 (335)
T PLN02630 91 IDGNGHEDRVLKRVCACDPIEPSDIPD----MRYEFGMAVGVAGEILPETLERMVEICDVVVVDIQALIRVFDPVDGTVK 166 (335)
T ss_pred cccCCCCeEEEEeccccCCCChHHCCH----HHhcccceeeecCCCcHHHHHHHHHHhhhheeccCceEEecCCcccccc
Confidence 334444444443 4888888876 246778899998776 5667788888887 6888999995421
Q ss_pred ------HhHHHhhhcCcEEecCcccchhhcCCCChHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhh
Q 046789 151 ------ERIDEFLKLASYAVCSAKFPQVWTEAPSVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVD 224 (336)
Q Consensus 151 ------~~~~~~l~~~dil~~n~~e~~~l~~~~~~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~ 224 (336)
..+..+++++|++++|++|+..+ + .+.+ .+ ...+|+|+|++|++++.+++..
T Consensus 167 ~~~~~~~~~~~~L~~iDil~~ne~Ea~~l----~-~~~~----~~---~~~vvvt~G~~G~~~~~~~~~~---------- 224 (335)
T PLN02630 167 LVKLEETGFYDMLPRIGFLKASSEEALFI----D-VEEV----RQ---KCCVIVTNGKKGCRIYWKDGEM---------- 224 (335)
T ss_pred cchhhHHHHHHHHHhCCEEEecHHHHhhc----C-HHHH----cc---CCEEEEEECCCceEEEECCeeE----------
Confidence 13567899999999999999876 1 2221 11 2389999999999998765432
Q ss_pred HHHHHHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHH
Q 046789 225 SLLEQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKML 304 (336)
Q Consensus 225 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al 304 (336)
++| + ++.+++|||||||+|+|||++++++|+++++|+
T Consensus 225 --------------~~~--------------------------~---~~v~~vDttGAGDaF~agfi~~l~~g~~~~~a~ 261 (335)
T PLN02630 225 --------------RVP--------------------------P---FPAIQVDPTGAGDSFLGGFVAGLVQGLAVPDAA 261 (335)
T ss_pred --------------EeC--------------------------C---CCCCCCCCCChHHHHHHHHHHHHHcCCCHHHHH
Confidence 344 4 567889999999999999999999999999999
Q ss_pred HHHHHHHHhhccccCCc
Q 046789 305 PFAAQVAAAGCRALGAR 321 (336)
Q Consensus 305 ~~a~~~Aa~~~~~~g~~ 321 (336)
++|+++|++++++.|..
T Consensus 262 ~~A~a~aa~~v~~~G~~ 278 (335)
T PLN02630 262 LLGNYFGSLAVEQVGIP 278 (335)
T ss_pred HHHHHHHHHHhCcCCCC
Confidence 99999999999999853
No 47
>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=99.97 E-value=4.1e-29 Score=212.10 Aligned_cols=263 Identities=23% Similarity=0.324 Sum_probs=209.1
Q ss_pred CCCCCCCCCCCCceE-----EecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccE
Q 046789 1 MSSDPLPPLPENRIV-----VQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPF 75 (336)
Q Consensus 1 ~~~~~~~p~~~~~~~-----~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~ 75 (336)
|+++|++|.++...| ++-||.+.|++..++.||.++.|+|.+.....-+.+++.|++.|||++++...+. ..+.
T Consensus 18 iTivd~~~fe~~~~r~~~g~wqRgG~asNvcTvlrlLG~~cef~Gvlsr~~~f~~lLddl~~rgIdishcpftd~-~pp~ 96 (308)
T KOG2947|consen 18 ITIVDKYPFEDSEIRCLSGRWQRGGNASNVCTVLRLLGAPCEFFGVLSRGHVFRFLLDDLRRRGIDISHCPFTDH-SPPF 96 (308)
T ss_pred EEeccCCCCCccceehhhhhhhcCCCcchHHHHHHHhCCchheeeecccchhHHHHHHHHHhcCCCcccCccccC-CCCc
Confidence 578999999999998 9999999999999999999999999999988999999999999999999987544 5677
Q ss_pred EEEEEcCCCCeeEEEecCC-CCCCCCcccchhhHhhhccCCcEEEEcCCcHHHHHHHHHHHHhC--------CCcEEEeC
Q 046789 76 TYVIVDNQMKTRTCIHTPG-DPPMIPDDLSESTIFSALDGARILYLDGRLPDTAIIVAQEAARK--------NIPILIDT 146 (336)
Q Consensus 76 ~~~~~~~~g~~~~~~~~~~-~~~~~~e~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~a~~~--------~~~v~~d~ 146 (336)
+.++++.+.+.|+.++... .+..+.+|+.+ -.+++..|+||.+..|...+++++...++ .+.+++|+
T Consensus 97 ssiI~~r~s~trTil~~dks~p~vT~~dF~k----vdl~qy~WihfE~Rnp~etlkM~~~I~~~N~r~pe~qrI~vSvd~ 172 (308)
T KOG2947|consen 97 SSIIINRNSGTRTILYCDKSLPDVTATDFEK----VDLTQYGWIHFEARNPSETLKMLQRIDAHNTRQPEEQRIRVSVDV 172 (308)
T ss_pred ceEEEecCCCceEEEEecCCCccccHHHhhh----cccceeeeEEEecCChHHHHHHHHHHHHhhcCCCccceEEEEEEe
Confidence 7777877778888887644 45888888886 56899999999999887777777665443 35689999
Q ss_pred CcchHhHHHhhhcCcEEecCcccchhhcCCCChHHHHHHHHHcCC---CCcEEEEeecCCceEEEeeccCCCCchhhhhh
Q 046789 147 ERQRERIDEFLKLASYAVCSAKFPQVWTEAPSVPSALVSMLLRLP---NLRFAIVTLGEDGCIMLERSVNESPELEEIDV 223 (336)
Q Consensus 147 ~~~~~~~~~~l~~~dil~~n~~e~~~l~~~~~~~~~~~~~l~~~~---~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~ 223 (336)
...++....++.+.|+++++++-+..+ +-+...|.+.....+.+ ....+|+-+++.|+-....+
T Consensus 173 en~req~~~l~am~DyVf~sK~~a~~~-gfks~rea~~~l~~r~~~~~pkpv~I~~w~~eGA~~l~ad------------ 239 (308)
T KOG2947|consen 173 ENPREQLFQLFAMCDYVFVSKDVAKHL-GFKSPREACEGLYGRVPKGKPKPVLICPWASEGAGALGAD------------ 239 (308)
T ss_pred cCcHHHHHHHhhcccEEEEEHHHHhhh-ccCCHHHHHHHHHhhcccCCCCcEEEeccccccccccCCC------------
Confidence 888899999999999999998876643 34445554444333221 12334444555554443333
Q ss_pred hHHHHHHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHH-HhCCChhh
Q 046789 224 DSLLEQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYAL-CANMSPEK 302 (336)
Q Consensus 224 ~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l-~~g~~l~~ 302 (336)
|+.|+.+++ +|.++||+.|+||+|.||+||++ .++.++.|
T Consensus 240 -------------------------------------g~yfev~a~--~ppkvVD~lg~~DtF~A~vIyA~lk~~r~l~e 280 (308)
T KOG2947|consen 240 -------------------------------------GKYFEVDAF--KPPKVVDTLGAGDTFNAGVIYALLKQGRSLAE 280 (308)
T ss_pred -------------------------------------CCEEecCCC--CCccceeeccCCCcchHHHHHHHHHhhhhHHH
Confidence 444555565 67889999999999999999995 57999999
Q ss_pred HHHHHHHHHHhhccccCC
Q 046789 303 MLPFAAQVAAAGCRALGA 320 (336)
Q Consensus 303 al~~a~~~Aa~~~~~~g~ 320 (336)
|+.||+++|+.++...|-
T Consensus 281 Avdfg~rvas~Kl~g~Gf 298 (308)
T KOG2947|consen 281 AVDFGNRVASKKLGGQGF 298 (308)
T ss_pred HHHHHHHhhhcccccccc
Confidence 999999999999998874
No 48
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.95 E-value=3.1e-26 Score=208.03 Aligned_cols=266 Identities=23% Similarity=0.242 Sum_probs=205.2
Q ss_pred CCCCCCCCCCceE---EecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEE
Q 046789 3 SDPLPPLPENRIV---VQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVI 79 (336)
Q Consensus 3 ~~~~~p~~~~~~~---~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~ 79 (336)
+.|.-|.|--.+. ..+|| |.|+|.+++.||+++.++|.+|+|..|+.+.+.|...+++..++. ++..+|+.-.-+
T Consensus 32 ISPEAPVPVv~v~~e~~rlGG-AaNVa~NiasLGa~a~l~GvvG~Deag~~L~~~l~~~~i~~~l~~-~~~r~T~~K~Rv 109 (467)
T COG2870 32 ISPEAPVPVVKVEKEEERLGG-AANVAKNIASLGANAYLVGVVGKDEAGKALIELLKANGIDSDLLR-DKNRPTIVKLRV 109 (467)
T ss_pred cCCCCCCceEEeccccccccc-HHHHHHHHHHcCCCEEEEEeeccchhHHHHHHHHHhcCcccceEe-ecCCCceeeeee
Confidence 3455666655555 67888 889999999999999999999999999999999999999966664 466777655555
Q ss_pred EcCCCCeeEEEecCCCCCCCCcccch--hhHhhhccCCcEEEEcCCcH---HHHHHHHHHHHhCCCcEEEeCCcchHhHH
Q 046789 80 VDNQMKTRTCIHTPGDPPMIPDDLSE--STIFSALDGARILYLDGRLP---DTAIIVAQEAARKNIPILIDTERQRERID 154 (336)
Q Consensus 80 ~~~~g~~~~~~~~~~~~~~~~e~~~~--~~~~~~l~~~~~i~~~~~~~---~~~~~~~~~a~~~~~~v~~d~~~~~~~~~ 154 (336)
... +.+....+....... ++... +.+...+++.+.++++-+-- ..+..+++.|++.++||.+||... -.
T Consensus 110 ~s~--nQQllRvD~Ee~~~~-~~~~~ll~~~~~~l~~~~~vVLSDY~KG~L~~~q~~I~~ar~~~~pVLvDPKg~---Df 183 (467)
T COG2870 110 LSR--NQQLLRLDFEEKFPI-EDENKLLEKIKNALKSFDALVLSDYAKGVLTNVQKMIDLAREAGIPVLVDPKGK---DF 183 (467)
T ss_pred ecc--cceEEEecccccCcc-hhHHHHHHHHHHHhhcCCEEEEeccccccchhHHHHHHHHHHcCCcEEECCCCc---ch
Confidence 532 223332222211111 22222 55777899999999987742 236789999999999999999532 13
Q ss_pred HhhhcCcEEecCcccchhhcCCCChHH---HHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHh
Q 046789 155 EFLKLASYAVCSAKFPQVWTEAPSVPS---ALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLK 231 (336)
Q Consensus 155 ~~l~~~dil~~n~~e~~~l~~~~~~~~---~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (336)
+..+.+.++.+|..|+....+.....+ +..+.|........+++|++++|+.++..++..
T Consensus 184 ~~Y~GAtLiTPN~~E~~~~vg~~~~e~el~~~g~kL~~~~~L~alLvTRsE~GMtL~~~~~~~----------------- 246 (467)
T COG2870 184 EKYRGATLITPNLKEFEEAVGKCKSEEELEERGQKLKEELDLSALLVTRSEKGMTLFQEGKPL----------------- 246 (467)
T ss_pred hhhCCCeecCCCHHHHHHHHcccccHHHHHHHHHHHHHhhCcceEEEEeccCCceeecCCccc-----------------
Confidence 456788999999999998877654433 334556666799999999999999999877654
Q ss_pred hhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHH
Q 046789 232 QRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVA 311 (336)
Q Consensus 232 ~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~A 311 (336)
|+| + ...+|-|.|||||+-.|.|.++++.|.++++|+.+||+||
T Consensus 247 -------h~p--------------------------t---~AkEVyDVTGAGDTVIa~la~~laaG~s~~eAc~lAN~Aa 290 (467)
T COG2870 247 -------HFP--------------------------A---RAKEVYDVTGAGDTVIAVLAAALAAGASLEEACELANAAA 290 (467)
T ss_pred -------ccc--------------------------h---hheeeeeccCCCchHHHHHHHHHHcCCCHHHHHHHhhhhc
Confidence 777 4 5678999999999999999999999999999999999999
Q ss_pred HhhccccCCccCCCCCCCcc
Q 046789 312 AAGCRALGARTSLPHRTDPR 331 (336)
Q Consensus 312 a~~~~~~g~~~~~p~~~e~~ 331 (336)
+..+...|+.. .+.+||+
T Consensus 291 giVVgKlGTat--vs~~EL~ 308 (467)
T COG2870 291 GIVVGKLGTAT--VSPEELE 308 (467)
T ss_pred ceEEeecccee--ecHHHHH
Confidence 99999999864 5666654
No 49
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=99.89 E-value=1.7e-22 Score=174.33 Aligned_cols=166 Identities=30% Similarity=0.484 Sum_probs=132.3
Q ss_pred CCCCCCCCCCceE-----EecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEE
Q 046789 3 SDPLPPLPENRIV-----VQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTY 77 (336)
Q Consensus 3 ~~~~~p~~~~~~~-----~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~ 77 (336)
.+|.+|.+++.++ ..+||+|.|+|.++++||.++.++|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~LG~~~~~~~------------------------------------- 57 (196)
T cd00287 15 RVDALPLPGGLVRPGDTEERAGGGAANVAVALARLGVSVTLVG------------------------------------- 57 (196)
T ss_pred EeccCCCCCCeEEeceeeecCCCcHHHHHHHHHHCCCcEEEEE-------------------------------------
Confidence 4677889887766 7999999999999999999999999
Q ss_pred EEEcCCCCeeEEEecCCCCCCCCcccchhhHhhhccCCcEEEEcCCcH--HHHHHHHHHHHhCCCcEEEeCCcch-----
Q 046789 78 VIVDNQMKTRTCIHTPGDPPMIPDDLSESTIFSALDGARILYLDGRLP--DTAIIVAQEAARKNIPILIDTERQR----- 150 (336)
Q Consensus 78 ~~~~~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~i~~~~~~~--~~~~~~~~~a~~~~~~v~~d~~~~~----- 150 (336)
+|++|+++..+ +...++++.+++.++++++|+....
T Consensus 58 -------------------------------------~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~ 100 (196)
T cd00287 58 -------------------------------------ADAVVISGLSPAPEAVLDALEEARRRGVPVVLDPGPRAVRLDG 100 (196)
T ss_pred -------------------------------------ccEEEEecccCcHHHHHHHHHHHHHcCCeEEEeCCcccccccc
Confidence 78999998876 6778899999999999999994221
Q ss_pred HhHHHhhhcCcEEecCcccchhhcCCCChH----HHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHH
Q 046789 151 ERIDEFLKLASYAVCSAKFPQVWTEAPSVP----SALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSL 226 (336)
Q Consensus 151 ~~~~~~l~~~dil~~n~~e~~~l~~~~~~~----~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~ 226 (336)
..+.++++++|++++|.+|+..+++..... .+..+.+.. .+.+.+|+|+|++|++++..+...
T Consensus 101 ~~~~~~~~~~dvl~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~-~g~~~vvvt~G~~g~~~~~~~~~~------------ 167 (196)
T cd00287 101 EELEKLLPGVDILTPNEEEAEALTGRRDLEVKEAAEAAALLLS-KGPKVVIVTLGEKGAIVATRGGTE------------ 167 (196)
T ss_pred chHHHHHhhCCEECCCHHHHHHHhCCCCCChHHHHHHHHHHHh-cCCCEEEEEECCCccEEEecCCce------------
Confidence 124678899999999999999998864432 133444444 388999999999999998732221
Q ss_pred HHHHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHH
Q 046789 227 LEQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALC 295 (336)
Q Consensus 227 ~~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~ 295 (336)
.++| . ++.+++||+||||+|+|||++++.
T Consensus 168 -----------~~~~--------------------------~---~~~~~vdt~GAGD~f~ag~~~~l~ 196 (196)
T cd00287 168 -----------VHVP--------------------------A---FPVKVVDTTGAGDAFLAALAAGLA 196 (196)
T ss_pred -----------EEcC--------------------------C---ccCCcccCCCchHHHHHHHHHHhC
Confidence 1333 3 456789999999999999999873
No 50
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=99.65 E-value=1.6e-15 Score=136.54 Aligned_cols=149 Identities=17% Similarity=0.062 Sum_probs=109.0
Q ss_pred cCCcEEEEcCCcH-----HHHHHHHHHHHhC--CCcEEEeCC-----c-------chHhHHHhhh-cCcEEecCcccchh
Q 046789 113 DGARILYLDGRLP-----DTAIIVAQEAARK--NIPILIDTE-----R-------QRERIDEFLK-LASYAVCSAKFPQV 172 (336)
Q Consensus 113 ~~~~~i~~~~~~~-----~~~~~~~~~a~~~--~~~v~~d~~-----~-------~~~~~~~~l~-~~dil~~n~~e~~~ 172 (336)
...+.+. .|+.+ +.+.++++.++++ ++++++||. . ..+.+.+++. ++|++++|..|+..
T Consensus 71 ~~~~~v~-~G~l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~l~~~~dvi~pN~~Ea~~ 149 (254)
T cd01173 71 LEYDAVL-TGYLGSAEQVEAVAEIVKRLKEKNPNLLYVCDPVMGDNGKLYVVAEEIVPVYRDLLVPLADIITPNQFELEL 149 (254)
T ss_pred ccCCEEE-EecCCCHHHHHHHHHHHHHHHHhCCCceEEECCCCCcCCcceecChhHHHHHHHHHHhcCCEECCcHHHHHH
Confidence 5667774 45542 4666788888776 899999993 1 1234556666 99999999999999
Q ss_pred hcCCCC----hHHHHHHHHHcCCCCcEEEEeecCC------ceEEEeeccCCCCchhhhhhhHHHHHHhhhcCCCCCCcc
Q 046789 173 WTEAPS----VPSALVSMLLRLPNLRFAIVTLGED------GCIMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVPT 242 (336)
Q Consensus 173 l~~~~~----~~~~~~~~l~~~~~~~~vvvt~G~~------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~ 242 (336)
+++.+. ..+.+++.+.. .+++.|++|.|+. |++++.++... .++
T Consensus 150 l~g~~~~~~~~~~~~~~~l~~-~g~~~Vvit~g~~~~~~~~g~~~~~~~~~~------------------------~~~- 203 (254)
T cd01173 150 LTGKKINDLEDAKAAARALHA-KGPKTVVVTSVELADDDRIEMLGSTATEAW------------------------LVQ- 203 (254)
T ss_pred HcCCCcCCHHHHHHHHHHHHH-hCCCEEEEEeeccCCCCcEEEEEEecCccE------------------------EEE-
Confidence 988642 23344555554 3899999999985 66666543321 111
Q ss_pred ccchhhhhhhccCcccccceeeecccccCCCCC-ccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhcc
Q 046789 243 CISSLETRLRAEGIGTVSGRLYIGTAEKIPPSE-LVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCR 316 (336)
Q Consensus 243 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~~ 316 (336)
. +..+ ++|++|+||+|.|+|+++|++|+++++|+++|++....+++
T Consensus 204 -------------------------~---~~~~~~~~~~GaGD~f~a~~~~~l~~g~~~~~a~~~A~~~~~~~i~ 250 (254)
T cd01173 204 -------------------------R---PKIPFPAYFNGTGDLFAALLLARLLKGKSLAEALEKALNFVHEVLE 250 (254)
T ss_pred -------------------------e---eccCCCCCcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 2 3333 68999999999999999999999999999999998776664
No 51
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=99.61 E-value=1.7e-14 Score=129.91 Aligned_cols=214 Identities=11% Similarity=0.123 Sum_probs=131.2
Q ss_pred CceEEEeecCChhh-HHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCeeEEEecCCCCCCCCcccchhhHhhhcc
Q 046789 35 NPRIISKIADDPQG-KGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHTPGDPPMIPDDLSESTIFSALD 113 (336)
Q Consensus 35 ~v~~i~~vG~D~~g-~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~l~ 113 (336)
+...++.-|.|+.| .-+...++....-. . ....+.++....+..| ... .. ...+.+.. .+ +.+.
T Consensus 3 ~~~vl~iag~d~~ggaG~~aD~~~~~~~~----~-~~~~~~t~~t~~~~~G-~~v--~~-----~~~~~l~~-~l-~~l~ 67 (253)
T PRK12413 3 TNYILAISGNDIFSGGGLHADLATYTRNG----L-HGFVAVTCLTAMTEKG-FEV--FP-----VDKEIFQQ-QL-DSLK 67 (253)
T ss_pred CCeEEEEeeeCCCCHHHHHHHHHHHHHcC----C-ccCeeeEEEecccCCc-eEE--EE-----CCHHHHHH-HH-HHhh
Confidence 35667777888664 44777776442111 1 1222343444445444 222 11 11122222 12 2234
Q ss_pred CCcEEEEc-CCcH--HHHHHHHHHHH-hCCCcEEEeCCc------------chHhHHHhhhcCcEEecCcccchhhcCCC
Q 046789 114 GARILYLD-GRLP--DTAIIVAQEAA-RKNIPILIDTER------------QRERIDEFLKLASYAVCSAKFPQVWTEAP 177 (336)
Q Consensus 114 ~~~~i~~~-~~~~--~~~~~~~~~a~-~~~~~v~~d~~~------------~~~~~~~~l~~~dil~~n~~e~~~l~~~~ 177 (336)
..++..+. |.+| +....+++..+ ++++++++||.. ..+.+..+++++|++++|.+|+..+++.+
T Consensus 68 ~~~~~~i~~G~l~~~~~~~~~~~~~~~~~~~~vv~DPv~~~~~~~~~~~~~~~~~l~~ll~~~dli~pN~~E~~~L~g~~ 147 (253)
T PRK12413 68 DVPFSAIKIGLLPNVEIAEQALDFIKGHPGIPVVLDPVLVCKETHDVEVSELRQELIQFFPYVTVITPNLVEAELLSGKE 147 (253)
T ss_pred CCCCCEEEECCcCCHHHHHHHHHHHHhCCCCCEEEcCceecCCCCccccHHHHHHHHHHhccCcEECCCHHHHHHHhCcC
Confidence 45555554 5553 33444555555 468899999831 12234567899999999999999999864
Q ss_pred C----hHHHHHHHHHcCCCCcEEEEeecCCce-----EEEeeccCCCCchhhhhhhHHHHHHhhhcCCCCCCccccchhh
Q 046789 178 S----VPSALVSMLLRLPNLRFAIVTLGEDGC-----IMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVPTCISSLE 248 (336)
Q Consensus 178 ~----~~~~~~~~l~~~~~~~~vvvt~G~~G~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~ 248 (336)
. ..+.+++.+... +++.||+|.|++|. .++..++.. +++
T Consensus 148 ~~~~~~~~~~a~~l~~~-g~~~Vvvt~g~~~~~~~~~~~~~~~~~~------------------------~~~------- 195 (253)
T PRK12413 148 IKTLEDMKEAAKKLYDL-GAKAVVIKGGNRLSQKKAIDLFYDGKEF------------------------VIL------- 195 (253)
T ss_pred CCCHHHHHHHHHHHHHc-CCCEEEEeCCCCCCCCcceEEEEcCCEE------------------------EEE-------
Confidence 2 123445555553 89999999998642 122221111 111
Q ss_pred hhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhccc
Q 046789 249 TRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRA 317 (336)
Q Consensus 249 ~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~~~ 317 (336)
. .+...+|++||||+|.|+|+++|++|+++++|+++|.++....++.
T Consensus 196 -------------------~---~~~~~~~~~GaGDaf~a~~~~~l~~g~~l~ea~~~A~~~~~~~l~~ 242 (253)
T PRK12413 196 -------------------E---SPVLEKNNIGAGCTFASSIASQLVKGKSPLEAVKNSKDFVYQAIQQ 242 (253)
T ss_pred -------------------e---ecccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 2 3445689999999999999999999999999999999988877765
No 52
>PRK05756 pyridoxamine kinase; Validated
Probab=99.57 E-value=2.9e-14 Score=130.69 Aligned_cols=151 Identities=16% Similarity=0.107 Sum_probs=107.0
Q ss_pred ccCCcEEEEcCCcH-----HHHHHHHHHHHhCC--CcEEEeCCc------------chHhH-HHhhhcCcEEecCcccch
Q 046789 112 LDGARILYLDGRLP-----DTAIIVAQEAARKN--IPILIDTER------------QRERI-DEFLKLASYAVCSAKFPQ 171 (336)
Q Consensus 112 l~~~~~i~~~~~~~-----~~~~~~~~~a~~~~--~~v~~d~~~------------~~~~~-~~~l~~~dil~~n~~e~~ 171 (336)
++.++.+ +.|+++ +.+.++++.+++.+ ..+++||.- ..+.+ ..+++++|++++|..|+.
T Consensus 72 l~~~~~v-~~G~l~~~~~~~~v~~~i~~~k~~~~~~~~v~DPv~~d~~~~~~~~~~~~~~~~~~ll~~adiitpN~~Ea~ 150 (286)
T PRK05756 72 LGECDAV-LSGYLGSAEQGEAILDAVRRVKAANPQALYFCDPVMGDPEKGCIVAPGVAEFLRDRALPAADIITPNLFELE 150 (286)
T ss_pred cccCCEE-EECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCCCEEECccHhHHHHHhhcccccEecCCHHHHH
Confidence 3577855 666653 45567777776655 558889831 11123 347899999999999999
Q ss_pred hhcCCCC----hHHHHHHHHHcCCCCcEEEEeecCC--------ceEEEeeccCCCCchhhhhhhHHHHHHhhhcCCCCC
Q 046789 172 VWTEAPS----VPSALVSMLLRLPNLRFAIVTLGED--------GCIMLERSVNESPELEEIDVDSLLEQLKQRKDDRAA 239 (336)
Q Consensus 172 ~l~~~~~----~~~~~~~~l~~~~~~~~vvvt~G~~--------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (336)
.+++.+. ....+++.+.. .+++.||+|.|+. |+++++.++.. +
T Consensus 151 ~L~g~~~~~~~~~~~~~~~l~~-~g~~~Vvvt~g~~~~~~~~~~g~~~~~~~~~~------------------------~ 205 (286)
T PRK05756 151 WLSGRPVETLEDAVAAARALIA-RGPKIVLVTSLARAGYPADRFEMLLVTADGAW------------------------H 205 (286)
T ss_pred HHhCCCcCCHHHHHHHHHHHHH-hCCCEEEEeccccCCCCCCcEEEEEEECCceE------------------------E
Confidence 9988532 12234444544 3899999999876 35554433221 1
Q ss_pred CccccchhhhhhhccCcccccceeeecccccCCCCCc-cccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhccc
Q 046789 240 VPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSEL-VDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRA 317 (336)
Q Consensus 240 vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v-vd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~~~ 317 (336)
++ . +..++ +|++||||+|.|+|+++|++|+++++|+++|++.....++.
T Consensus 206 ~~--------------------------~---~~~~~~v~~~GaGD~f~a~~~a~l~~g~~~~~al~~A~~~~~~~i~~ 255 (286)
T PRK05756 206 IS--------------------------R---PLVDFMRQPVGVGDLTSALFLARLLQGGSLEEALEHTTAAVYEVMAR 255 (286)
T ss_pred Ee--------------------------c---CccCCCCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 11 2 34555 69999999999999999999999999999999999888875
No 53
>PRK12412 pyridoxal kinase; Reviewed
Probab=99.57 E-value=4.6e-14 Score=128.09 Aligned_cols=155 Identities=12% Similarity=0.107 Sum_probs=112.1
Q ss_pred hhhccC--CcEEEEcCCc-HHHHHHHHHHHHhCCCc-EEEeCCc------------chHh-HHHhhhcCcEEecCcccch
Q 046789 109 FSALDG--ARILYLDGRL-PDTAIIVAQEAARKNIP-ILIDTER------------QRER-IDEFLKLASYAVCSAKFPQ 171 (336)
Q Consensus 109 ~~~l~~--~~~i~~~~~~-~~~~~~~~~~a~~~~~~-v~~d~~~------------~~~~-~~~~l~~~dil~~n~~e~~ 171 (336)
...+.+ .+.+.+.... .+....+++.+++.+.+ +++||.- ..+. ...+++.+|++++|..|+.
T Consensus 65 ~~l~~d~~~~~ikiG~l~~~~~v~~i~~~~~~~~~~~vv~DPv~~~~~g~~~~~~~~~~~~~~~ll~~advitpN~~Ea~ 144 (268)
T PRK12412 65 ETTIEGVGVDALKTGMLGSVEIIEMVAETIEKHNFKNVVVDPVMVCKGADEALHPETNDCLRDVLVPKALVVTPNLFEAY 144 (268)
T ss_pred HHHHhCCCCCEEEECCCCCHHHHHHHHHHHHhcCCCCEEECcCeeeCCCCcCCChHHHHHHHHhhhccceEEcCCHHHHH
Confidence 344554 7888886554 45666777778777765 9999931 1122 3457899999999999999
Q ss_pred hhcCCCC----hHHHHHHHHHcCCCCcEEEEeecCCce------EEEeeccCCCCchhhhhhhHHHHHHhhhcCCCCCCc
Q 046789 172 VWTEAPS----VPSALVSMLLRLPNLRFAIVTLGEDGC------IMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVP 241 (336)
Q Consensus 172 ~l~~~~~----~~~~~~~~l~~~~~~~~vvvt~G~~G~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp 241 (336)
.|++.+. ....+++.+.. .+++.|++|.|+.|. +++..+... ++|
T Consensus 145 ~L~g~~~~~~~~~~~aa~~l~~-~g~~~ViIt~G~~g~~~~~~~~~~~~~~~~------------------------~~~ 199 (268)
T PRK12412 145 QLSGVKINSLEDMKEAAKKIHA-LGAKYVLIKGGSKLGTETAIDVLYDGETFD------------------------LLE 199 (268)
T ss_pred HHhCcCCCCHHHHHHHHHHHHh-cCCCEEEEeccCCCCCCceEEEEEeCCEEE------------------------EEE
Confidence 9988532 22344555555 499999999998753 222211100 122
Q ss_pred cccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhccc
Q 046789 242 TCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRA 317 (336)
Q Consensus 242 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~~~ 317 (336)
. +..+++|++|+||+|.|+|+++|++|+++++|+++|..+....+..
T Consensus 200 --------------------------~---~~v~~~~t~GaGD~f~aa~aa~l~~g~~l~eA~~~A~~~~~~~i~~ 246 (268)
T PRK12412 200 --------------------------S---EKIDTTNTHGAGCTYSAAITAELAKGKPVKEAVKTAKEFITAAIRY 246 (268)
T ss_pred --------------------------e---CccCCCCCCchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 3 5667889999999999999999999999999999999999888775
No 54
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=99.56 E-value=2.9e-14 Score=130.61 Aligned_cols=198 Identities=15% Similarity=0.147 Sum_probs=123.6
Q ss_pred HHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCeeEEEecCCCCCCCCcccch--hhH--hhhccCCcEEEEcCCc
Q 046789 49 KGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHTPGDPPMIPDDLSE--STI--FSALDGARILYLDGRL 124 (336)
Q Consensus 49 ~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~e~~~~--~~~--~~~l~~~~~i~~~~~~ 124 (336)
....--|+.+|+++..++ | .++.+ ++.+.......+..+++.. +.+ ...++++|++ +.|+.
T Consensus 19 ~~~~~~l~~~g~~~~~~p------T---~~~s~-----h~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~v-~~G~l 83 (286)
T TIGR00687 19 RAATFPLQRLGFEVWAVN------T---VQFSN-----HTGYGKWTGQVLPPDELTELVDGLAAINKLNQCDAV-LSGYL 83 (286)
T ss_pred chHHHHHHHcCCcceeeC------c---EEcCC-----CCCCCCCcCeECCHHHHHHHHHHHHhcCccccCCEE-EECCC
Confidence 345567888899877652 2 11111 1111111113445555554 112 1124588986 55665
Q ss_pred H-----HHHHHHHHHHHhCC--CcEEEeCC------------cchHhH-HHhhhcCcEEecCcccchhhcCCCC--h--H
Q 046789 125 P-----DTAIIVAQEAARKN--IPILIDTE------------RQRERI-DEFLKLASYAVCSAKFPQVWTEAPS--V--P 180 (336)
Q Consensus 125 ~-----~~~~~~~~~a~~~~--~~v~~d~~------------~~~~~~-~~~l~~~dil~~n~~e~~~l~~~~~--~--~ 180 (336)
+ +.+.++++.+++.+ +++++||. ...+.+ ..+++++|++++|..|+..+++.+. . .
T Consensus 84 ~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~d~~~~~~~~~~~~~~~~~~ll~~adii~pN~~Ea~~L~g~~~~~~~~~ 163 (286)
T TIGR00687 84 GSAEQVAMVVGIVRQVKQANPQALYVCDPVMGDPEKGCYVAPDLLEVYREKAIPVADIITPNQFELELLTGRKINTVEEA 163 (286)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCcEEECCeeeeCCCCeeeChhHHHHHHHhccccccEecCCHHHHHHHhCCCcCCHHHH
Confidence 4 35567777777654 67889992 111223 2467899999999999999988542 1 2
Q ss_pred HHHHHHHHcCCCCcEEEEe-ecCCceE--------EEeeccCCCCchhhhhhhHHHHHHhhhcCCCCCCccccchhhhhh
Q 046789 181 SALVSMLLRLPNLRFAIVT-LGEDGCI--------MLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVPTCISSLETRL 251 (336)
Q Consensus 181 ~~~~~~l~~~~~~~~vvvt-~G~~G~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~ 251 (336)
..+++.+.. .+++.+|+| .|.+|+. ++.+++.. +++
T Consensus 164 ~~~~~~l~~-~g~~~Viit~~g~~g~~~~~~~~~~~~~~~~~~------------------------~~~---------- 208 (286)
T TIGR00687 164 LAAADALIA-MGPDIVLVTHLARAGSQRDRDFEGLVVTQEGRW------------------------HIS---------- 208 (286)
T ss_pred HHHHHHHHH-hCCCEEEEEeccccCCCCCcceeEEEEcCCceE------------------------EEe----------
Confidence 234454554 388999999 6877752 22221110 111
Q ss_pred hccCcccccceeeecccccCCCCC-ccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhc
Q 046789 252 RAEGIGTVSGRLYIGTAEKIPPSE-LVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGC 315 (336)
Q Consensus 252 ~~~g~~~~~~~~~~~~~~~~~~~~-vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~ 315 (336)
. +..+ ++|++||||+|.|||++++++|+++++|+++|+++....+
T Consensus 209 ----------------~---~~~~~~~d~~GaGD~f~A~~l~~l~~g~~~~~al~~A~~~v~~~l 254 (286)
T TIGR00687 209 ----------------R---PLAVFMRQPVGTGDLIAALLLATLLHGNSLKEALEKTVSAVYHVL 254 (286)
T ss_pred ----------------c---cCcCCCCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 2 3344 6899999999999999999999999999999999933333
No 55
>PRK07105 pyridoxamine kinase; Validated
Probab=99.56 E-value=1.9e-14 Score=131.72 Aligned_cols=166 Identities=17% Similarity=0.109 Sum_probs=113.2
Q ss_pred CCcEEEEcCCcH-H---HHHHHHHHHHhCCCcEEEeCCcc-------------hHhHHHhhhcCcEEecCcccchhhcCC
Q 046789 114 GARILYLDGRLP-D---TAIIVAQEAARKNIPILIDTERQ-------------RERIDEFLKLASYAVCSAKFPQVWTEA 176 (336)
Q Consensus 114 ~~~~i~~~~~~~-~---~~~~~~~~a~~~~~~v~~d~~~~-------------~~~~~~~l~~~dil~~n~~e~~~l~~~ 176 (336)
.+|.+.+..... + .+.++++.+++.++++++||.-. .+.+.++++++|++++|..|+..|++.
T Consensus 75 ~~~aik~G~l~~~~~~~~v~~~~~~~~~~~~~vv~DPv~~~~~~l~~~~~~~~~~~~~~ll~~advitpN~~Ea~~L~g~ 154 (284)
T PRK07105 75 KFDAIYSGYLGSPRQIQIVSDFIKYFKKKDLLVVVDPVMGDNGKLYQGFDQEMVEEMRKLIQKADVITPNLTEACLLLDK 154 (284)
T ss_pred ccCEEEECcCCCHHHHHHHHHHHHHhccCCCeEEECCccccCCcCCCCCCHHHHHHHHHHHhhCCEecCCHHHHHHHcCC
Confidence 678888743322 3 33345555566788999999410 134567899999999999999999885
Q ss_pred CC------h--HHHHHHHHHcCCCCcEEEEee-----cCCceEEEeeccCCCCchhhhhhhHHHHHHhhhcCCCCCCccc
Q 046789 177 PS------V--PSALVSMLLRLPNLRFAIVTL-----GEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVPTC 243 (336)
Q Consensus 177 ~~------~--~~~~~~~l~~~~~~~~vvvt~-----G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~ 243 (336)
+. . .+.+++.+.. .+.+.||+|. |..|++++..+... ...++
T Consensus 155 ~~~~~~~~~~~~~~~a~~l~~-~g~~~Vvvt~~~~~~g~~g~~~~~~~~~~----------------------~~~~~-- 209 (284)
T PRK07105 155 PYLEKSYSEEEIKQLLRKLAD-LGPKIVIITSVPFEDGKIGVAYYDRATDR----------------------FWKVF-- 209 (284)
T ss_pred CcCcCCCCHHHHHHHHHHHHh-cCCCEEEEcCeeeCCCeEEEEEEeCCCCe----------------------EEEEe--
Confidence 31 1 1234445544 3889999999 56677776543211 00111
Q ss_pred cchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhccccCCccC
Q 046789 244 ISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRALGARTS 323 (336)
Q Consensus 244 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~~~~g~~~~ 323 (336)
. +.. .+|++|+||+|.|+|++++++|+++++++++|.++....+++.... .
T Consensus 210 ------------------------~---~~~-~~~~~GaGD~f~aa~~~~l~~g~~l~~av~~A~~~~~~~i~~~~~~-~ 260 (284)
T PRK07105 210 ------------------------C---KYI-PAHYPGTGDIFTSVITGSLLQGDSLPIALDRAVQFIEKGIRATLGL-K 260 (284)
T ss_pred ------------------------e---ccc-CCCcCChhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhc-C
Confidence 2 223 3789999999999999999999999999999999999888865443 2
Q ss_pred CCCCCCcccc
Q 046789 324 LPHRTDPRLA 333 (336)
Q Consensus 324 ~p~~~e~~~~ 333 (336)
.+...++-.+
T Consensus 261 ~~~~~~i~~~ 270 (284)
T PRK07105 261 YDLREGILLE 270 (284)
T ss_pred CchhhCccHH
Confidence 3444444433
No 56
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=99.56 E-value=7.6e-14 Score=124.66 Aligned_cols=149 Identities=15% Similarity=0.116 Sum_probs=107.3
Q ss_pred CCcEEEEcCCc-HHHHHHHHHHHHhC-CCcEEEeCCcc-------------hHhHHHhhhcCcEEecCcccchhhcCCCC
Q 046789 114 GARILYLDGRL-PDTAIIVAQEAARK-NIPILIDTERQ-------------RERIDEFLKLASYAVCSAKFPQVWTEAPS 178 (336)
Q Consensus 114 ~~~~i~~~~~~-~~~~~~~~~~a~~~-~~~v~~d~~~~-------------~~~~~~~l~~~dil~~n~~e~~~l~~~~~ 178 (336)
+.+.+.+.... ++....+.+.+++. +.++++||... ......+++++|++++|..|+..|++.+.
T Consensus 68 ~~~~i~~G~l~~~~~~~~i~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g~~~ 147 (242)
T cd01169 68 PVDAIKIGMLGSAEIIEAVAEALKDYPDIPVVLDPVMVAKSGDSLLDDDAIEALRELLLPLATLITPNLPEAELLTGLEI 147 (242)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHhCCCCcEEECCceeCCCCCcccCHHHHHHHHHHhhccCeEEeCCHHHHHHHhCCCC
Confidence 67888884433 45555667777765 88999999411 11224456999999999999999988642
Q ss_pred ----hHHHHHHHHHcCCCCcEEEEeecCCc----e-EEEeeccCCCCchhhhhhhHHHHHHhhhcCCCCCCccccchhhh
Q 046789 179 ----VPSALVSMLLRLPNLRFAIVTLGEDG----C-IMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVPTCISSLET 249 (336)
Q Consensus 179 ----~~~~~~~~l~~~~~~~~vvvt~G~~G----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~ 249 (336)
..+.+++.+.. .+.+.||+|.|+.| . +++..++.. ++|
T Consensus 148 ~~~~~~~~~~~~l~~-~g~~~Vvit~g~~~~~~~~~~~~~~~~~~------------------------~~~-------- 194 (242)
T cd01169 148 ATEEDMMKAAKALLA-LGAKAVLIKGGHLPGDEAVDVLYDGGGFF------------------------EFE-------- 194 (242)
T ss_pred CCHHHHHHHHHHHHh-cCCCEEEEecCCCCCCceeEEEEECCcEE------------------------EEe--------
Confidence 12334555554 48999999999875 3 444432211 222
Q ss_pred hhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhcc
Q 046789 250 RLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCR 316 (336)
Q Consensus 250 ~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~~ 316 (336)
. ++.+++|++|+||+|.|+|+++|++|+++++|+++|++.-...++
T Consensus 195 ------------------~---~~~~~~~~~GaGD~f~a~l~a~l~~g~~~~~A~~~A~~~~~~~i~ 240 (242)
T cd01169 195 ------------------S---PRIDTKNTHGTGCTLSSAIAANLAKGLSLEEAVREAKEYVTQAIR 240 (242)
T ss_pred ------------------c---ceeCCCCCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 3 455678999999999999999999999999999999988766554
No 57
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=99.55 E-value=6.9e-14 Score=125.97 Aligned_cols=150 Identities=14% Similarity=0.119 Sum_probs=110.3
Q ss_pred CCcEEEEcCCc-HHHHHHHHHHHHhCCC-cEEEeCCc-------c-----hHhH-HHhhhcCcEEecCcccchhhcCCCC
Q 046789 114 GARILYLDGRL-PDTAIIVAQEAARKNI-PILIDTER-------Q-----RERI-DEFLKLASYAVCSAKFPQVWTEAPS 178 (336)
Q Consensus 114 ~~~~i~~~~~~-~~~~~~~~~~a~~~~~-~v~~d~~~-------~-----~~~~-~~~l~~~dil~~n~~e~~~l~~~~~ 178 (336)
+.+.+.+.... .+....+++.+++.+. ++++||.- . ...+ ..+++++|++++|..|+..+++.+.
T Consensus 67 ~~~aikiG~l~~~~~~~~i~~~~~~~~~~~vVlDPv~~~~~g~~l~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g~~~ 146 (254)
T TIGR00097 67 PVDAAKTGMLASAEIVEAVARKLREYPVRPLVVDPVMVAKSGAPLLEEEAIEALRKRLLPLATLITPNLPEAEALLGTKI 146 (254)
T ss_pred CCCEEEECCcCCHHHHHHHHHHHHhcCCCcEEECCccccCCCCcCCCHHHHHHHHHhccccccEecCCHHHHHHHhCCCC
Confidence 34777775443 4666778888888888 69999831 0 0122 3577999999999999999988531
Q ss_pred ----hHHHHHHHHHcCCCCcEEEEeecCC----ce-EEEeeccCCCCchhhhhhhHHHHHHhhhcCCCCCCccccchhhh
Q 046789 179 ----VPSALVSMLLRLPNLRFAIVTLGED----GC-IMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVPTCISSLET 249 (336)
Q Consensus 179 ----~~~~~~~~l~~~~~~~~vvvt~G~~----G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~ 249 (336)
....+++.+.. .+.+.|++|.|+. |. +++..++.. ++|
T Consensus 147 ~~~~~~~~~a~~l~~-~g~~~Vvvt~G~~~~~~~~~~~~~~~~~~------------------------~~~-------- 193 (254)
T TIGR00097 147 RTEQDMIKAAKKLRE-LGPKAVLIKGGHLEGDQAVDVLFDGGEIH------------------------ILK-------- 193 (254)
T ss_pred CCHHHHHHHHHHHHh-cCCCEEEEeCCCCCCCceeEEEEECCeEE------------------------EEE--------
Confidence 22345555554 4899999999973 33 334332211 222
Q ss_pred hhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhccc
Q 046789 250 RLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRA 317 (336)
Q Consensus 250 ~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~~~ 317 (336)
. +..+++|++|+||+|.|+|+++|++|+++++|+++|++++...++.
T Consensus 194 ------------------~---~~~~~~d~~GaGD~f~aalaa~la~g~~l~eA~~~A~~~~~~~i~~ 240 (254)
T TIGR00097 194 ------------------A---PRIETKNTHGTGCTLSAAIAANLAKGLSLKEAVKEAKEFVTGAIRY 240 (254)
T ss_pred ------------------e---cccCCCCCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 3 5677889999999999999999999999999999999999998876
No 58
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=99.54 E-value=1.5e-13 Score=133.33 Aligned_cols=149 Identities=15% Similarity=0.157 Sum_probs=107.9
Q ss_pred cEEEEcCCc-HHHHHHHHHHHHhCCCcEEEeCC-------cch------HhHHHhhhcCcEEecCcccchhhcCCCC---
Q 046789 116 RILYLDGRL-PDTAIIVAQEAARKNIPILIDTE-------RQR------ERIDEFLKLASYAVCSAKFPQVWTEAPS--- 178 (336)
Q Consensus 116 ~~i~~~~~~-~~~~~~~~~~a~~~~~~v~~d~~-------~~~------~~~~~~l~~~dil~~n~~e~~~l~~~~~--- 178 (336)
+.+-+.... .+.+..+++.+++.++++++||. ..+ .....+++++|++++|..|+..+++.+.
T Consensus 73 ~~ik~G~l~~~e~~~~i~~~~k~~g~~vv~DPv~~~~sG~~l~~~~~~~~l~~~llp~adli~pN~~Ea~~L~g~~i~~~ 152 (448)
T PRK08573 73 DAAKTGMLSNREIIEAVAKTVSKYGFPLVVDPVMIAKSGAPLLREDAVDALIKRLLPLATVVTPNRPEAEKLTGMKIRSV 152 (448)
T ss_pred CEEEECCcCCHHHHHHHHHHHHHcCCCEEEcCccccCCCCcCCCHHHHHHHHHhhhccCEEEcCCHHHHHHHhCCCCCCH
Confidence 444443332 36677888999999999999983 111 1235677999999999999999988541
Q ss_pred -hHHHHHHHHHcCCCCcEEEEeecC----Cce-EEEeeccCCCCchhhhhhhHHHHHHhhhcCCCCCCccccchhhhhhh
Q 046789 179 -VPSALVSMLLRLPNLRFAIVTLGE----DGC-IMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVPTCISSLETRLR 252 (336)
Q Consensus 179 -~~~~~~~~l~~~~~~~~vvvt~G~----~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~ 252 (336)
..+.+++.+....+++.||+|.|+ +|+ +++..+... ++|
T Consensus 153 ~d~~~aa~~L~~~~G~~~VvVt~G~~~g~~~~~~~~~~~~~~------------------------~~~----------- 197 (448)
T PRK08573 153 EDARKAAKYIVEELGAEAVVVKGGHLEGEEAVDVLYHNGTFR------------------------EFR----------- 197 (448)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecccCCCCceeEEEEECCeEE------------------------EEE-----------
Confidence 233455555433489999999985 243 233322111 222
Q ss_pred ccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhccc
Q 046789 253 AEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRA 317 (336)
Q Consensus 253 ~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~~~ 317 (336)
. ++.+++|++||||+|.|+|++++++|+++++|+++|+.+....+++
T Consensus 198 ---------------~---~~v~~~dt~GAGDaFsAa~aa~l~~G~~l~eAl~~A~~~~~~al~~ 244 (448)
T PRK08573 198 ---------------A---PRVESGCTHGTGCSFSAAIAAGLAKGLDPEEAIKTAKKFITMAIKY 244 (448)
T ss_pred ---------------e---cCcCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 3 5667889999999999999999999999999999999998888883
No 59
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
Probab=99.51 E-value=2.3e-13 Score=123.38 Aligned_cols=151 Identities=18% Similarity=0.178 Sum_probs=109.3
Q ss_pred CCcEEEEcCCc-HHHHHHHHHHHHhCCC-cEEEeCC-------cc-----hHhH-HHhhhcCcEEecCcccchhhcCCCC
Q 046789 114 GARILYLDGRL-PDTAIIVAQEAARKNI-PILIDTE-------RQ-----RERI-DEFLKLASYAVCSAKFPQVWTEAPS 178 (336)
Q Consensus 114 ~~~~i~~~~~~-~~~~~~~~~~a~~~~~-~v~~d~~-------~~-----~~~~-~~~l~~~dil~~n~~e~~~l~~~~~ 178 (336)
..+.+.+.... ++....+++.+++.+. ++++||. .. .+.+ ..+++++|++++|..|+..|++.+.
T Consensus 73 ~~~ai~iG~l~~~~~~~~i~~~~~~~~~~~vv~DPv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g~~~ 152 (266)
T PRK06427 73 RIDAVKIGMLASAEIIETVAEALKRYPIPPVVLDPVMIAKSGDPLLADDAVAALRERLLPLATLITPNLPEAEALTGLPI 152 (266)
T ss_pred CCCEEEECCcCCHHHHHHHHHHHHhCCCCCEEEcCccccCCCCcCCCHHHHHHHHHhhhCcCeEEcCCHHHHHHHhCCCC
Confidence 56778775543 4555567777777765 7999993 11 1123 3578999999999999999988531
Q ss_pred --h---HHHHHHHHHcCCCCcEEEEeecC--Cce----EEEeeccCCCCchhhhhhhHHHHHHhhhcCCCCCCccccchh
Q 046789 179 --V---PSALVSMLLRLPNLRFAIVTLGE--DGC----IMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVPTCISSL 247 (336)
Q Consensus 179 --~---~~~~~~~l~~~~~~~~vvvt~G~--~G~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~ 247 (336)
. .+.+++.+.. .+.+.||+|.|+ +|. +++..+... ++|
T Consensus 153 ~~~~~~~~~~a~~l~~-~g~~~Vvit~g~~~~g~~~~~~~~~~~~~~------------------------~~~------ 201 (266)
T PRK06427 153 ADTEDEMKAAARALHA-LGCKAVLIKGGHLLDGEESVDWLFDGEGEE------------------------RFS------ 201 (266)
T ss_pred CCcHHHHHHHHHHHHh-cCCCEEEEcCCCCCCCCceeEEEEeCCcEE------------------------EEE------
Confidence 1 2345555554 389999999998 553 344332211 222
Q ss_pred hhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhcccc
Q 046789 248 ETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRAL 318 (336)
Q Consensus 248 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~~~~ 318 (336)
. +..+++|++|+||+|.|+|++++++|+++++|+++|++.+...+++.
T Consensus 202 --------------------~---~~~~~~~~~GaGD~f~a~l~~~l~~g~~l~~A~~~A~~~~~~~i~~~ 249 (266)
T PRK06427 202 --------------------A---PRIPTKNTHGTGCTLSAAIAAELAKGASLLDAVQTAKDYVTRAIRHA 249 (266)
T ss_pred --------------------e---eeECCCCCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3 45567899999999999999999999999999999999999888763
No 60
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed
Probab=99.51 E-value=1.9e-13 Score=124.89 Aligned_cols=150 Identities=16% Similarity=0.108 Sum_probs=105.2
Q ss_pred cCCcEEEEcCCc----HHHHHHHHHHHHh--CCCcEEEeCC------------cchHhHH-HhhhcCcEEecCcccchhh
Q 046789 113 DGARILYLDGRL----PDTAIIVAQEAAR--KNIPILIDTE------------RQRERID-EFLKLASYAVCSAKFPQVW 173 (336)
Q Consensus 113 ~~~~~i~~~~~~----~~~~~~~~~~a~~--~~~~v~~d~~------------~~~~~~~-~~l~~~dil~~n~~e~~~l 173 (336)
..+|.+++.... .+.+.++++..+. .+.++++||. ...+.++ .+++.+|++++|..|+..|
T Consensus 87 ~~~d~i~~G~l~s~~~~~~i~~~l~~~~~~~~~~~vv~DPvm~d~~~~~~~~~~~~~~~~~~Ll~~advitPN~~Ea~~L 166 (281)
T PRK08176 87 RQLRAVTTGYMGSASQIKILAEWLTALRADHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQHLLPLAQGLTPNIFELEIL 166 (281)
T ss_pred ccCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCcEEeCCccccCCCCeEECccHHHHHHHHhHhhcCEeCCCHHHHHHH
Confidence 478999884332 2344455554433 4778999994 0112343 5889999999999999999
Q ss_pred cCCC--Ch--HHHHHHHHHcCCCCcEEEEeecCCc-------eEEEeeccCCCCchhhhhhhHHHHHHhhhcCCCCCCcc
Q 046789 174 TEAP--SV--PSALVSMLLRLPNLRFAIVTLGEDG-------CIMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVPT 242 (336)
Q Consensus 174 ~~~~--~~--~~~~~~~l~~~~~~~~vvvt~G~~G-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~ 242 (336)
++.+ +. ..++++.+... +.+.||||.|+.| ++++.++.. +.+
T Consensus 167 ~g~~~~~~~~~~~~~~~l~~~-g~~~VvIT~g~~g~~~~~~~~~~~~~~~~-------------------------~~~- 219 (281)
T PRK08176 167 TGKPCRTLDSAIAAAKSLLSD-TLKWVVITSAAGNEENQEMQVVVVTADSV-------------------------NVI- 219 (281)
T ss_pred hCCCCCCHHHHHHHHHHHHhc-CCCEEEEeeccCCCCCCcEEEEEEeCCce-------------------------EEE-
Confidence 8853 21 12344555543 8999999999987 344443221 111
Q ss_pred ccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhccc
Q 046789 243 CISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRA 317 (336)
Q Consensus 243 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~~~ 317 (336)
. .+...+|++|+||+|.|+|++++++|+++++|+++|+..-...++.
T Consensus 220 -------------------------~---~~~~~~~~~GaGD~faa~~~a~l~~g~~l~~Av~~A~~~v~~~i~~ 266 (281)
T PRK08176 220 -------------------------S---HPRVDTDLKGTGDLFCAELVSGLLKGKALTDAAHRAGLRVLEVMRY 266 (281)
T ss_pred -------------------------e---cCccCCCCCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 1 2333569999999999999999999999999999999887777754
No 61
>PRK12616 pyridoxal kinase; Reviewed
Probab=99.42 E-value=2.2e-12 Score=117.15 Aligned_cols=150 Identities=15% Similarity=0.112 Sum_probs=105.3
Q ss_pred CCcEEEEcCCc-HHHHHHHHHHHHhCC-CcEEEeCCc---------c---hHhHH-HhhhcCcEEecCcccchhhcCCC-
Q 046789 114 GARILYLDGRL-PDTAIIVAQEAARKN-IPILIDTER---------Q---RERID-EFLKLASYAVCSAKFPQVWTEAP- 177 (336)
Q Consensus 114 ~~~~i~~~~~~-~~~~~~~~~~a~~~~-~~v~~d~~~---------~---~~~~~-~~l~~~dil~~n~~e~~~l~~~~- 177 (336)
..+.+.+.... .+....+.+.+++.+ .++++||.- . .+.+. .+++.+|++++|..|++.|++..
T Consensus 74 ~~~aikiG~l~s~~~i~~i~~~l~~~~~~~vV~DPV~~~~~g~~~l~~~~~~~l~~~L~~~advitpN~~Ea~~L~g~~~ 153 (270)
T PRK12616 74 GVDAMKTGMLPTVDIIELAADTIKEKQLKNVVIDPVMVCKGANEVLYPEHAEALREQLAPLATVITPNLFEAGQLSGMGE 153 (270)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHhcCCCCEEEccceecCCCCcccCHHHHHHHHHHhhccceEecCCHHHHHHHcCCCC
Confidence 34677774432 355556677777665 469999931 1 13333 36789999999999999998751
Q ss_pred --C--hHHHHHHHHHcCCCCcEEEEeecCCce------EEEeeccCCCCchhhhhhhHHHHHHhhhcCCCCCCccccchh
Q 046789 178 --S--VPSALVSMLLRLPNLRFAIVTLGEDGC------IMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVPTCISSL 247 (336)
Q Consensus 178 --~--~~~~~~~~l~~~~~~~~vvvt~G~~G~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~ 247 (336)
+ ..+.+++.+.. .+.+.||+|.|+.|. ++++.+... +++
T Consensus 154 ~~~~~~~~~aa~~l~~-~G~~~VvVt~G~~g~~~~~~~~~~~~~~~~------------------------~~~------ 202 (270)
T PRK12616 154 IKTVEQMKEAAKKIHE-LGAQYVVITGGGKLKHEKAVDVLYDGETAE------------------------VLE------ 202 (270)
T ss_pred CCCHHHHHHHHHHHHH-cCCCEEEEeCCCCCcCCceEEEEEECCeEE------------------------EEE------
Confidence 1 12344555555 389999999998762 333222111 111
Q ss_pred hhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhccc
Q 046789 248 ETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRA 317 (336)
Q Consensus 248 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~~~ 317 (336)
. +..+.++++|+||+|.|+|+++|++|+++++|+++|.......+..
T Consensus 203 --------------------~---~~~~~~~t~GaGD~fsaalaa~l~~g~~l~~Av~~A~~~~~~~i~~ 249 (270)
T PRK12616 203 --------------------S---EMIDTPYTHGAGCTFSAAVTAELAKGSEVKEAIYAAKEFITAAIKE 249 (270)
T ss_pred --------------------e---eeeCCCCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 2 5566778999999999999999999999999999999998877765
No 62
>PTZ00344 pyridoxal kinase; Provisional
Probab=99.39 E-value=5.9e-12 Score=115.89 Aligned_cols=172 Identities=15% Similarity=0.141 Sum_probs=104.3
Q ss_pred CCCCCcccch--hhHhhhc-cCCcEEEEcCCcH--H---HHHHHHHHHHhCC--CcEEEeCC-----------cchHhHH
Q 046789 96 PPMIPDDLSE--STIFSAL-DGARILYLDGRLP--D---TAIIVAQEAARKN--IPILIDTE-----------RQRERID 154 (336)
Q Consensus 96 ~~~~~e~~~~--~~~~~~l-~~~~~i~~~~~~~--~---~~~~~~~~a~~~~--~~v~~d~~-----------~~~~~~~ 154 (336)
..++++++.. +.+.+.. .....+++.|++| + .+.++++.+++.+ +++++||. ...+.+.
T Consensus 55 ~~i~~~~~~~~l~~l~~~~~~~~~~~v~sG~l~~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~l~~~~~~~~~~~ 134 (296)
T PTZ00344 55 HRLDLNELITLMDGLRANNLLSDYTYVLTGYINSADILREVLATVKEIKELRPKLIFLCDPVMGDDGKLYVKEEVVDAYR 134 (296)
T ss_pred eeCCHHHHHHHHHHHHhcCCcccCCEEEECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCceEeCHHHHHHHH
Confidence 4666666655 2222211 2223555667764 3 3334444444454 57999962 2234456
Q ss_pred HhhhcCcEEecCcccchhhcCCC--ChH--HHHHHHHHcCCCCcEEEEe---ecCCc----eEEEeeccCCCCchhhhhh
Q 046789 155 EFLKLASYAVCSAKFPQVWTEAP--SVP--SALVSMLLRLPNLRFAIVT---LGEDG----CIMLERSVNESPELEEIDV 223 (336)
Q Consensus 155 ~~l~~~dil~~n~~e~~~l~~~~--~~~--~~~~~~l~~~~~~~~vvvt---~G~~G----~~~~~~~~~~~~~~~~~~~ 223 (336)
.+++++|++++|.+|+..+++.+ +.. ..+++.+... +++.||+| .|.+| +++.......
T Consensus 135 ~ll~~~dii~pN~~E~~~L~g~~~~~~~~~~~~~~~l~~~-g~~~VvVTg~~~~~~g~~~~~l~~~~~~~~--------- 204 (296)
T PTZ00344 135 ELIPYADVITPNQFEASLLSGVEVKDLSDALEAIDWFHEQ-GIPVVVITSFREDEDPTHLRFLLSCRDKDT--------- 204 (296)
T ss_pred HHhhhCCEEeCCHHHHHHHhCCCCCCHHHHHHHHHHHHHh-CCCEEEEEeecCCCCCCcEEEEEEeccccC---------
Confidence 77889999999999999998864 222 2345555543 89999999 54455 3333211100
Q ss_pred hHHHHHHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhH
Q 046789 224 DSLLEQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKM 303 (336)
Q Consensus 224 ~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~a 303 (336)
..+..|.... +..+ ++++|+||+|.|+|++.+.+| ++++|
T Consensus 205 -----------------------------------~~~~~~~~~~---~~~~-~~~~GaGD~f~A~~~a~l~~g-~~~~a 244 (296)
T PTZ00344 205 -----------------------------------KNNKRFTGKV---PYIE-GRYTGTGDLFAALLLAFSHQH-PMDLA 244 (296)
T ss_pred -----------------------------------CCceeEEEec---cccC-CCCCCchHHHHHHHHHHHhcC-CHHHH
Confidence 0000111112 3343 577999999999999777777 99999
Q ss_pred HHHHHHHHHhhccc
Q 046789 304 LPFAAQVAAAGCRA 317 (336)
Q Consensus 304 l~~a~~~Aa~~~~~ 317 (336)
+++|.+.-...++.
T Consensus 245 ~~~A~a~~~~~i~~ 258 (296)
T PTZ00344 245 VGKAMGVLQDIIKA 258 (296)
T ss_pred HHHHHHHHHHHHHH
Confidence 99998887766654
No 63
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=99.36 E-value=9.6e-12 Score=115.28 Aligned_cols=207 Identities=21% Similarity=0.214 Sum_probs=138.7
Q ss_pred EecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCeeEEEecCCC
Q 046789 16 VQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHTPGD 95 (336)
Q Consensus 16 ~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~ 95 (336)
...||.|.|.|.++++||.++.+++.+|+|..+++.+
T Consensus 374 Qa~GGVarN~A~a~~~lg~d~~liSavG~d~n~~~~~------------------------------------------- 410 (614)
T KOG3009|consen 374 QAMGGVARNHADALARLGCDSVLISAVGDDNNGHFFR------------------------------------------- 410 (614)
T ss_pred hhccchhhhHHHHHHHhcCCeeEEEEeccCCcchhhh-------------------------------------------
Confidence 6789999999999999999999999999983111100
Q ss_pred CCCCCcccchhhHhhhccCCcEEEEcCCcH-HHHHHHHHHHHhCCCcEEEeCCc---chHhHHHhh-hcCcEEecCcccc
Q 046789 96 PPMIPDDLSESTIFSALDGARILYLDGRLP-DTAIIVAQEAARKNIPILIDTER---QRERIDEFL-KLASYAVCSAKFP 170 (336)
Q Consensus 96 ~~~~~e~~~~~~~~~~l~~~~~i~~~~~~~-~~~~~~~~~a~~~~~~v~~d~~~---~~~~~~~~l-~~~dil~~n~~e~ 170 (336)
..+.+.++. .+.+.+++++++|++.. ....++++ ++.+.++|+|+|-. ....++.++ -.++.+++|..|+
T Consensus 411 -~~~~~~~e~---~~dl~~a~~I~~DsNiS~~~Ma~il~-ak~~k~~V~fEPTd~~k~~K~fk~l~v~~i~~i~PN~~El 485 (614)
T KOG3009|consen 411 -QNSHKIVES---NEDLLSADFILLDSNISVPVMARILE-AKKHKKQVWFEPTDIDKVKKVFKTLLVGAITAISPNANEL 485 (614)
T ss_pred -hhhhhhhhh---hhhhhcCCEEEEcCCCCHHHHHHHHH-hhhccCceEecCCCchhhhhhhhhcceeeEEeeCCCHHHH
Confidence 001111111 12244899999998864 55566777 88999999999932 222333333 3577888998887
Q ss_pred hhhcCCC------------ChH----HHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhhhc
Q 046789 171 QVWTEAP------------SVP----SALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRK 234 (336)
Q Consensus 171 ~~l~~~~------------~~~----~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (336)
-.|.... +.. +.....++ .....+|+|+.++|+++..++...+.+
T Consensus 486 l~a~k~~~v~~nps~~q~~~~~~~~~~~~~~k~~--~~~s~~I~tl~~~G~l~~yr~k~g~l~----------------- 546 (614)
T KOG3009|consen 486 LKAAKLCHVSVNPSVIQTADGVLELIEKEKTKLL--LNTSIFIVTLANKGSLVVYRNKLGQLE----------------- 546 (614)
T ss_pred HHHhhcCceeeChhhhccchHHHHHHHHHHHHhh--cccceEEEEeccCceEEEecCCCCCcc-----------------
Confidence 5443221 111 11122222 267789999999999988876543100
Q ss_pred CCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhh
Q 046789 235 DDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAG 314 (336)
Q Consensus 235 ~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~ 314 (336)
.+..| .+....++++..||||+|++|++.+++.+.++.+|+.-+..|+-..
T Consensus 547 --~~s~~---------------------------p~~~~~n~vsvsgaGdsf~~g~i~~l~~~~~v~es~~gg~~~~ral 597 (614)
T KOG3009|consen 547 --FQSLP---------------------------PPLQMNNVVSVSGAGDSFNSGVIAGLAHNKTVVESLQGGQECARAL 597 (614)
T ss_pred --cccCC---------------------------CcccccceeEeccCCcccccceeehhhcCcchHhhccccHHHHHHH
Confidence 01111 1112347899999999999999999999999999999997777666
Q ss_pred cccc
Q 046789 315 CRAL 318 (336)
Q Consensus 315 ~~~~ 318 (336)
++..
T Consensus 598 ls~s 601 (614)
T KOG3009|consen 598 LSTS 601 (614)
T ss_pred Hhcc
Confidence 5543
No 64
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=99.25 E-value=7.7e-11 Score=106.13 Aligned_cols=153 Identities=15% Similarity=0.070 Sum_probs=106.6
Q ss_pred hhccCCcEEEEcCCcH--HHHHHHHHHHHhCCCcEEEeCCcchHhHH----HhhhcCcEEecCcccchhhcCCCCh----
Q 046789 110 SALDGARILYLDGRLP--DTAIIVAQEAARKNIPILIDTERQRERID----EFLKLASYAVCSAKFPQVWTEAPSV---- 179 (336)
Q Consensus 110 ~~l~~~~~i~~~~~~~--~~~~~~~~~a~~~~~~v~~d~~~~~~~~~----~~l~~~dil~~n~~e~~~l~~~~~~---- 179 (336)
..+...|++++.+.++ +....+++.+++++.++++|+....-... .+++..+++.+|..|+..+++....
T Consensus 73 ~~~~~~d~v~ig~gl~~~~~~~~i~~~~~~~~~pvVlDa~~~~~~~~~~~~~~~~~~~iltPn~~E~~~L~g~~~~~~~~ 152 (254)
T cd01171 73 ELLERADAVVIGPGLGRDEEAAEILEKALAKDKPLVLDADALNLLADEPSLIKRYGPVVLTPHPGEFARLLGALVEEIQA 152 (254)
T ss_pred hhhccCCEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEcHHHHHhhcChhhhccCCCEEECCCHHHHHHHhCCChhhhhh
Confidence 4467889999987554 56778888888889999999953211111 1346789999999999999885421
Q ss_pred -HHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhhhcCCCCCCccccchhhhhhhccCccc
Q 046789 180 -PSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVPTCISSLETRLRAEGIGT 258 (336)
Q Consensus 180 -~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~ 258 (336)
....++.+.+. + ..+|+..|. +.++++.+... +++
T Consensus 153 ~~~~~a~~l~~~-~-~~~vvlkG~-~~~i~~~~~~~------------------------~~~----------------- 188 (254)
T cd01171 153 DRLAAAREAAAK-L-GATVVLKGA-VTVIADPDGRV------------------------YVN----------------- 188 (254)
T ss_pred HHHHHHHHHHHH-c-CcEEEEcCC-CCEEECCCCcE------------------------EEE-----------------
Confidence 12344445553 3 345556674 55555433221 111
Q ss_pred ccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhcccc
Q 046789 259 VSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRAL 318 (336)
Q Consensus 259 ~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~~~~ 318 (336)
. +....++++|+||+|.|.+.+.+++|+++++|+++|+.+.+.+.+..
T Consensus 189 ---------~---~~~~~~~~~GaGD~lag~iaa~la~g~~~~eA~~~A~~~~~~a~~~~ 236 (254)
T cd01171 189 ---------P---TGNPGLATGGSGDVLAGIIAALLAQGLSPLEAAALAVYLHGLAGDLA 236 (254)
T ss_pred ---------C---CCCcccccCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 2 34567899999999977777777899999999999999998888753
No 65
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=99.24 E-value=6.4e-11 Score=116.83 Aligned_cols=163 Identities=18% Similarity=0.184 Sum_probs=106.5
Q ss_pred CcccchhhHhhhccCCcEEEE-cCCcH--HHHHHHHHHHHhCCCcEEEeCCc---------c-------hHhH-HHhhhc
Q 046789 100 PDDLSESTIFSALDGARILYL-DGRLP--DTAIIVAQEAARKNIPILIDTER---------Q-------RERI-DEFLKL 159 (336)
Q Consensus 100 ~e~~~~~~~~~~l~~~~~i~~-~~~~~--~~~~~~~~~a~~~~~~v~~d~~~---------~-------~~~~-~~~l~~ 159 (336)
++.+.. .+...+.+.++..+ .|.++ +.+..+++.++ +.++++||.- . .+.+ ..+++.
T Consensus 284 ~~~~~~-ql~~l~~d~~~~~Ik~G~l~s~e~i~~i~~~l~--~~~vV~DPV~~~~~G~~l~~~~~~~~~~~~~~~~Ll~~ 360 (504)
T PTZ00347 284 EDFFAA-QIDSVMSDFNISVVKLGLVPTARQLEIVIEKLK--NLPMVVDPVLVATSGDDLVAQKNADDVLAMYKERIFPM 360 (504)
T ss_pred HHHHHH-HHHHHHhCCCCCEEEECCcCCHHHHHHHHHHhc--CCCEEEcccceeCCCCcccchhHHHHHHHHHHHhccCc
Confidence 344443 23445555554443 45543 44455555553 6789999831 0 0112 256789
Q ss_pred CcEEecCcccchhhcCCCC-----hHHHHHHHHHcCCCCcEEEEeecCCc-------eEEEeeccCCCCchhhhhhhHHH
Q 046789 160 ASYAVCSAKFPQVWTEAPS-----VPSALVSMLLRLPNLRFAIVTLGEDG-------CIMLERSVNESPELEEIDVDSLL 227 (336)
Q Consensus 160 ~dil~~n~~e~~~l~~~~~-----~~~~~~~~l~~~~~~~~vvvt~G~~G-------~~~~~~~~~~~~~~~~~~~~~~~ 227 (336)
+|++++|..|+..|++.+. ..+.+++.+.. .|++.||||.|+.| .+++..+..
T Consensus 361 advitPN~~Ea~~L~g~~~~~~~~~~~~aa~~l~~-~G~~~VvVtgg~~~~~~~~~~~~l~~~~~~-------------- 425 (504)
T PTZ00347 361 ATIITPNIPEAERILGRKEITGVYEARAAAQALAQ-YGSRYVLVKGGHDLIDPEACRDVLYDREKD-------------- 425 (504)
T ss_pred ceEEeCCHHHHHHHhCCCCCCCHHHHHHHHHHHHh-cCCCEEEEeCCCCCcCCCcceEEEEcCCCC--------------
Confidence 9999999999999988531 22344555555 49999999999863 233322111
Q ss_pred HHHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHH
Q 046789 228 EQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFA 307 (336)
Q Consensus 228 ~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a 307 (336)
.++..+. +..+++|++|+||+|.|++++++++|+++++|+++|
T Consensus 426 ----------------------------------~~~~~~~---~~i~~~~~~GaGD~fsaaiaa~la~G~~l~eAv~~A 468 (504)
T PTZ00347 426 ----------------------------------RFYEFTA---NRIATINTHGTGCTLASAISSFLARGYTVPDAVERA 468 (504)
T ss_pred ----------------------------------eEEEEEe---eeECCCCCCChHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 0111113 556678999999999999999999999999999999
Q ss_pred HHHHHhhccc
Q 046789 308 AQVAAAGCRA 317 (336)
Q Consensus 308 ~~~Aa~~~~~ 317 (336)
...-...+..
T Consensus 469 ~~~v~~~i~~ 478 (504)
T PTZ00347 469 IGYVHEAIVR 478 (504)
T ss_pred HHHHHHHHHh
Confidence 8777666654
No 66
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=99.22 E-value=1.3e-10 Score=114.47 Aligned_cols=157 Identities=11% Similarity=0.104 Sum_probs=108.6
Q ss_pred HhhhccC--CcEEEEcCCc-HHHHHHHHHHHHhCCCc-EEEeCCc------------chHhH-HHhhhcCcEEecCcccc
Q 046789 108 IFSALDG--ARILYLDGRL-PDTAIIVAQEAARKNIP-ILIDTER------------QRERI-DEFLKLASYAVCSAKFP 170 (336)
Q Consensus 108 ~~~~l~~--~~~i~~~~~~-~~~~~~~~~~a~~~~~~-v~~d~~~------------~~~~~-~~~l~~~dil~~n~~e~ 170 (336)
+...+.+ .+.+.+.... .+.+..+++.+++.+.+ +++||.- ..+.+ ..+++.+|++++|..|+
T Consensus 70 l~~~~~d~~~~aik~G~l~~~~~i~~i~~~l~~~~~~~vVlDPV~~~~~G~~l~~~~~~~~l~~~Ll~~adiitPN~~Ea 149 (502)
T PLN02898 70 LKSVLSDMPVDVVKTGMLPSAEIVKVLCQALKEFPVKALVVDPVMVSTSGDVLAGPSILSALREELLPLATIVTPNVKEA 149 (502)
T ss_pred HHHHHhCCCCCEEEECCcCCHHHHHHHHHHHHhCCCCCEEEccccccCCCCccCCHHHHHHHHHhhhccCeEEcCCHHHH
Confidence 3344443 4666664332 35556677777777774 9999931 11223 35778999999999999
Q ss_pred hhhcCCC---C--hHHHHHHHHHcCCCCcEEEEeecCCc------eEEEeeccCCCCchhhhhhhHHHHHHhhhcCCCCC
Q 046789 171 QVWTEAP---S--VPSALVSMLLRLPNLRFAIVTLGEDG------CIMLERSVNESPELEEIDVDSLLEQLKQRKDDRAA 239 (336)
Q Consensus 171 ~~l~~~~---~--~~~~~~~~l~~~~~~~~vvvt~G~~G------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (336)
..|++.. . ....+++.+.. .+.+.||+|.|+.+ .+++..+... +
T Consensus 150 ~~L~g~~~~~~~~~~~~~a~~l~~-~G~~~VvItgg~~~~~~~~~~~l~~~~~~~------------------------~ 204 (502)
T PLN02898 150 SALLGGDPLETVADMRSAAKELHK-LGPRYVLVKGGHLPDSLDAVDVLYDGTEFH------------------------E 204 (502)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHh-cCCCEEEEcCCCCCCCCcceEEEEcCCeEE------------------------E
Confidence 9998642 1 22344555554 38899999999853 1333321110 1
Q ss_pred CccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhcccc
Q 046789 240 VPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRAL 318 (336)
Q Consensus 240 vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~~~~ 318 (336)
++ . +..+.+|++|+||+|.|+|++++++|+++++|+++|.......+.+.
T Consensus 205 ~~--------------------------~---~~i~~~~t~GaGD~fsaaiaa~l~~G~~l~eAv~~A~~~v~~ai~~~ 254 (502)
T PLN02898 205 LR--------------------------S---SRIKTRNTHGTGCTLASCIAAELAKGSDMLSAVKVAKRYVETALEYS 254 (502)
T ss_pred Ee--------------------------c---ceeCCCCCCchhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 11 3 55667899999999999999999999999999999999999888763
No 67
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=99.08 E-value=1.1e-09 Score=99.54 Aligned_cols=153 Identities=11% Similarity=0.016 Sum_probs=101.1
Q ss_pred HhhhccCCcEEEEcCCcH--HHHHHHHHHHHhCCCcEEEeCCcchHhHHHh---hhcCcEEecCcccchhhcCCCCh---
Q 046789 108 IFSALDGARILYLDGRLP--DTAIIVAQEAARKNIPILIDTERQRERIDEF---LKLASYAVCSAKFPQVWTEAPSV--- 179 (336)
Q Consensus 108 ~~~~l~~~~~i~~~~~~~--~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~---l~~~dil~~n~~e~~~l~~~~~~--- 179 (336)
+.+.++.+|++++.+..+ ..+.++++.+++.+.|+++|+... ...... ....+++++|..|+..+++....
T Consensus 86 ~~~~~~~~davvig~Gl~~~~~~~~l~~~~~~~~~pvVlDa~g~-~l~~~~~~~~~~~~vItPN~~El~~L~g~~~~~~~ 164 (272)
T TIGR00196 86 DEELLERYDVVVIGPGLGQDPSFKKAVEEVLELDKPVVLDADAL-NLLTYDKPKREGEVILTPHPGEFKRLLGLVNEIQG 164 (272)
T ss_pred HHhhhccCCEEEEcCCCCCCHHHHHHHHHHHhcCCCEEEEhHHH-HHHhhcccccCCCEEECCCHHHHHHHhCCchhhhh
Confidence 345568889999987554 345678888888999999999521 111111 24679999999999999885321
Q ss_pred -HHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhhhcCCCCCCccccchhhhhhhccCccc
Q 046789 180 -PSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVPTCISSLETRLRAEGIGT 258 (336)
Q Consensus 180 -~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~ 258 (336)
....++.+.+. ...+|++.|..++++...+..+ ..
T Consensus 165 ~~~~aa~~l~~~--~~~vVv~kG~~~~i~~~~~~~~------------------------~~------------------ 200 (272)
T TIGR00196 165 DRLEAAQDIAQK--LQAVVVLKGAADVIAAPDGDLW------------------------IN------------------ 200 (272)
T ss_pred hHHHHHHHHHHH--hCCEEEEcCCCCEEEcCCCeEE------------------------EE------------------
Confidence 22334444442 3458888888887654222111 11
Q ss_pred ccceeeecccccCCCCCccccCCchhhhHHHHHHHH-HhCCChhhHHHHH---HHHHHhhcccc
Q 046789 259 VSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYAL-CANMSPEKMLPFA---AQVAAAGCRAL 318 (336)
Q Consensus 259 ~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l-~~g~~l~~al~~a---~~~Aa~~~~~~ 318 (336)
. ......+++|+||+ ++|+++++ ++|.++.+|+..| +..|+..+...
T Consensus 201 ---------~---~~~~~~~~~GaGD~-lag~iaa~la~g~~~~~A~~~a~~~~~~a~~~~~~~ 251 (272)
T TIGR00196 201 ---------K---TGNAALAKGGTGDV-LAGLIGGLLAQNLDPFDAACNAAFAHGLAGDLALKN 251 (272)
T ss_pred ---------C---CCCCccCCCCchHH-HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 33456789999999 55555555 5899999999777 77777766443
No 68
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=99.04 E-value=9.4e-10 Score=113.15 Aligned_cols=156 Identities=17% Similarity=0.142 Sum_probs=105.3
Q ss_pred HhhhccC--CcEEEEcCCc-HHHHHHHHHHHHhC-CCcEEEeCCc------------chHhHHHhhhcCcEEecCcccch
Q 046789 108 IFSALDG--ARILYLDGRL-PDTAIIVAQEAARK-NIPILIDTER------------QRERIDEFLKLASYAVCSAKFPQ 171 (336)
Q Consensus 108 ~~~~l~~--~~~i~~~~~~-~~~~~~~~~~a~~~-~~~v~~d~~~------------~~~~~~~~l~~~dil~~n~~e~~ 171 (336)
+...+.+ .+.+-+.... .+.+..+++.+++. +.++++||.- ..+.+.++++.+|++.+|..|+.
T Consensus 302 l~~~~~d~~~~aiKiGmL~s~e~v~~i~~~l~~~~~~~vVlDPV~~~~sG~~l~~~~~~~~l~~Llp~adlItPN~~Ea~ 381 (755)
T PRK09517 302 LEAVFSDVTVDAVKLGMLGSADTVDLVASWLGSHEHGPVVLDPVMVATSGDRLLDADATEALRRLAVHVDVVTPNIPELA 381 (755)
T ss_pred HHHHHcCCCCCEEEECCCCCHHHHHHHHHHHHhCCCCCEEEecccccCCCCCCCCHHHHHHHHHHhCcccCccCCHHHHH
Confidence 3344443 3566664332 35555677777663 5679999831 12335678899999999999999
Q ss_pred hhcCCC---ChH--HHHHHHHHcCCCCcEEEEeecC------CceEEEeeccCCCCchhhhhhhHHHHHHhhhcCCCCCC
Q 046789 172 VWTEAP---SVP--SALVSMLLRLPNLRFAIVTLGE------DGCIMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAV 240 (336)
Q Consensus 172 ~l~~~~---~~~--~~~~~~l~~~~~~~~vvvt~G~------~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 240 (336)
.|++.. +.. ..+++.+....+ ..||||.|+ .++++...+.
T Consensus 382 ~L~g~~~~~~~~d~~~aa~~L~~~~g-~~VVVkgGh~~~~~~~~~l~~~~~~---------------------------- 432 (755)
T PRK09517 382 VLCGEAPAITMDEAIAQARGFARTHG-TIVIVKGGHLTGDLADNAVVRPDGS---------------------------- 432 (755)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHhcC-CEEEEcCCcCCCCccceEEEeCCCe----------------------------
Confidence 998842 211 233444444334 479999984 3444332211
Q ss_pred ccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhccc
Q 046789 241 PTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCRA 317 (336)
Q Consensus 241 p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~~~ 317 (336)
.+..+. +..+.+|++|+||+|.|+++++|++|+++++|+++|...-...+.+
T Consensus 433 ----------------------~~~~~~---~~v~~~~t~GaGDtfsaaiaa~La~G~sl~eAv~~A~~~v~~~i~~ 484 (755)
T PRK09517 433 ----------------------VHQVEN---PRVNTTNSHGTGCSLSAALATLIAAGESVEKALEWATRWLNEALRH 484 (755)
T ss_pred ----------------------EEEEee---cccCCCCCcChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHh
Confidence 111113 5667889999999999999999999999999999999888777755
No 69
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=99.02 E-value=2.5e-09 Score=106.08 Aligned_cols=209 Identities=15% Similarity=0.095 Sum_probs=121.1
Q ss_pred cCCCceEEEeecCChhhHH-HHHHH---HHcCCcccceEEeCCCCccEEEEEEcCCCCeeEEEecCCCCCCCCcccchhh
Q 046789 32 LGLNPRIISKIADDPQGKG-IREEF---EADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHTPGDPPMIPDDLSEST 107 (336)
Q Consensus 32 LG~~v~~i~~vG~D~~g~~-i~~~l---~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~e~~~~~~ 107 (336)
-+.....++.-|-|+.|.. |...+ ...|+..-.+ .| ++..-+..+ +... ..+.++.+.. .
T Consensus 26 ~~~~~~vl~Iag~D~sGgaGi~aDl~t~~a~g~~~~~v------~T--alt~q~t~~-----v~~v--~~~~~~~i~~-q 89 (530)
T PRK14713 26 AAATPRVLSIAGTDPSGGAGIQADLKSIAAAGGYGMAV------IT--ALVAQNTRG-----VRAV--HVPPADFLRA-Q 89 (530)
T ss_pred CCCCCeEEEEeCcCCCcHHHHHHHHHHHHHcCCeecch------hh--eEeeecCcc-----eeee--ccCCHHHHHH-H
Confidence 3445667888888877644 54444 5555543222 12 222222111 1110 1334444443 2
Q ss_pred Hhhhcc--CCcEEEEcCCc-HHHHHHHHHHHHhC-CCcEEEeCCc------------chHhHHHhhhcCcEEecCcccch
Q 046789 108 IFSALD--GARILYLDGRL-PDTAIIVAQEAARK-NIPILIDTER------------QRERIDEFLKLASYAVCSAKFPQ 171 (336)
Q Consensus 108 ~~~~l~--~~~~i~~~~~~-~~~~~~~~~~a~~~-~~~v~~d~~~------------~~~~~~~~l~~~dil~~n~~e~~ 171 (336)
+...+. ..+.+.+.-.. .+....+.+..++. ..+|++||.- ..+.+.++++.+|++++|..|+.
T Consensus 90 l~~l~~d~~~~aikiG~l~s~~~i~~v~~~l~~~~~~~vVlDPv~~~~~G~~l~~~~~~~~~~~Ll~~advItPN~~Ea~ 169 (530)
T PRK14713 90 LDAVSDDVTVDAVKIGMLGDAEVIDAVRTWLAEHRPPVVVLDPVMVATSGDRLLEEDAEAALRELVPRADLITPNLPELA 169 (530)
T ss_pred HHHHHhCCCCCEEEECCcCCHHHHHHHHHHHHhCCCCCEEECCcccCCCCCCCCCHHHHHHHHHHhhhhheecCChHHHH
Confidence 223333 34667664332 23333344444332 3468999931 12345678899999999999999
Q ss_pred hhcCCCC--hHH---HHHHHHHcCCCCcEEEEeecCCc-----eEEEeeccCCCCchhhhhhhHHHHHHhhhcCCCCCCc
Q 046789 172 VWTEAPS--VPS---ALVSMLLRLPNLRFAIVTLGEDG-----CIMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVP 241 (336)
Q Consensus 172 ~l~~~~~--~~~---~~~~~l~~~~~~~~vvvt~G~~G-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp 241 (336)
.|++.+. ..+ .++..+....+ ..||||.|+.+ ..++..+..
T Consensus 170 ~Ltg~~~~~~~~d~~~aa~~L~~~~g-~~VvItgG~~~~~~~~d~~~~~~~~---------------------------- 220 (530)
T PRK14713 170 VLLGEPPATTWEEALAQARRLAAETG-TTVLVKGGHLDGQRAPDALVGPDGA---------------------------- 220 (530)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHhcC-CEEEEeCCCCCCCcceEEEEcCCCe----------------------------
Confidence 9988532 222 23444443324 58999988642 222222111
Q ss_pred cccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHH
Q 046789 242 TCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQ 309 (336)
Q Consensus 242 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~ 309 (336)
.+..+. +..+++|++|+||+|.|+|+++|++|+++++|+++|..
T Consensus 221 ---------------------~~~~~~---~~v~~~~t~GaGD~fsaalaa~La~G~~l~eAv~~A~~ 264 (530)
T PRK14713 221 ---------------------VTEVPG---PRVDTRNTHGTGCSLSSALATRLGRGGDWAAALRWATA 264 (530)
T ss_pred ---------------------EEEEee---eeeCCCCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 111113 55677899999999999999999999999999999987
No 70
>PLN02978 pyridoxal kinase
Probab=99.01 E-value=6.3e-09 Score=96.25 Aligned_cols=156 Identities=16% Similarity=0.088 Sum_probs=95.0
Q ss_pred CcEEEEcCCc--H---HHHHHHHHHHHh--CCCcEEEeCCc-----------chHhHH-HhhhcCcEEecCcccchhhcC
Q 046789 115 ARILYLDGRL--P---DTAIIVAQEAAR--KNIPILIDTER-----------QRERID-EFLKLASYAVCSAKFPQVWTE 175 (336)
Q Consensus 115 ~~~i~~~~~~--~---~~~~~~~~~a~~--~~~~v~~d~~~-----------~~~~~~-~~l~~~dil~~n~~e~~~l~~ 175 (336)
++.+.+ |++ . +.+.++++.+++ .++++++||.- ..+.+. .+++.+|++++|..|+..+++
T Consensus 87 ~~ai~~-G~l~s~~~~~~v~~~l~~~~~~~~~~~vvlDPvm~d~G~l~~~~~~~~~~~~~ll~~adiitPN~~Ea~~L~g 165 (308)
T PLN02978 87 YTHLLT-GYIGSVSFLRTVLRVVKKLRSVNPNLTYVCDPVLGDEGKLYVPPELVPVYREKVVPLATMLTPNQFEAEQLTG 165 (308)
T ss_pred cCEEEe-cccCCHHHHHHHHHHHHHHHHhCCCCeEEECCcccCCCCccCChhHHHHHHHHHHhhCCeeccCHHHHHHHhC
Confidence 566655 433 2 455567776665 45778999941 112243 588999999999999999988
Q ss_pred CC--Ch--HHHHHHHHHcCCCCcEEEEeecCC-ceEEEeeccCCCCchhhhhhhHHHHHHhhhcCCCCCCccccchhhhh
Q 046789 176 AP--SV--PSALVSMLLRLPNLRFAIVTLGED-GCIMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVPTCISSLETR 250 (336)
Q Consensus 176 ~~--~~--~~~~~~~l~~~~~~~~vvvt~G~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~ 250 (336)
.+ +. ...+++.+.. .+.+.||||.+.. |.+........
T Consensus 166 ~~~~~~~~~~~a~~~l~~-~g~~~VVITs~~~~~~~~~~~~~~~------------------------------------ 208 (308)
T PLN02978 166 IRIVTEEDAREACAILHA-AGPSKVVITSIDIDGKLLLVGSHRK------------------------------------ 208 (308)
T ss_pred CCCCCHHHHHHHHHHHHH-hCCCEEEEEEecCCCCEEEEEeccc------------------------------------
Confidence 54 11 2244445554 3889999987542 33322110000
Q ss_pred hhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhC-CChhhHHHHHHHHHHhhccc
Q 046789 251 LRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCAN-MSPEKMLPFAAQVAAAGCRA 317 (336)
Q Consensus 251 ~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g-~~l~~al~~a~~~Aa~~~~~ 317 (336)
.++ ..+..|.... +..+.. .+|+||+|.|.+++.+.+| .++++|++.|...-...++.
T Consensus 209 --~~~---~~~~~~~~~~---~~i~~~-~~GtGD~fsA~laa~l~~g~~~l~~A~~~A~~~v~~~i~~ 267 (308)
T PLN02978 209 --EKG---ARPEQFKIVI---PKIPAY-FTGTGDLMAALLLGWSHKYPDNLDKAAELAVSSLQAVLRR 267 (308)
T ss_pred --ccC---CCCceEEEEc---cCCCCC-CCCchHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHH
Confidence 000 0001111112 333333 5899999999877777887 79999999998777666654
No 71
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=98.99 E-value=2.1e-09 Score=96.27 Aligned_cols=150 Identities=19% Similarity=0.184 Sum_probs=97.1
Q ss_pred CCcEEEEcCCc-HHHHHHHHHHHHhCCCcEEEeCC------------cchHhHHH-hhhcCcEEecCcccchhhcCCC--
Q 046789 114 GARILYLDGRL-PDTAIIVAQEAARKNIPILIDTE------------RQRERIDE-FLKLASYAVCSAKFPQVWTEAP-- 177 (336)
Q Consensus 114 ~~~~i~~~~~~-~~~~~~~~~~a~~~~~~v~~d~~------------~~~~~~~~-~l~~~dil~~n~~e~~~l~~~~-- 177 (336)
..+.+.+.-.. .+.+..+.+..++.+.++++||. ...+.+++ +++.+|++.+|..|+..|.+.+
T Consensus 60 ~~~aikiG~l~~~~~v~~i~~~l~~~~~~vV~DPVm~~~~g~~~~~~~~~~~~~~~Llp~AdiitPN~~Ea~~L~g~~i~ 139 (246)
T PF08543_consen 60 KFDAIKIGYLGSAEQVEIIADFLKKPKIPVVLDPVMGDSGGYYYVDPDVVEAMREELLPLADIITPNLTEAELLTGREIN 139 (246)
T ss_dssp C-SEEEE-S-SSHHHHHHHHHHHHHTTTEEEEE---EETTTECTSSHHHHHHHHHHCGGG-SEEE-BHHHHHHHHTS--S
T ss_pred cccEEEEcccCCchhhhhHHHHHhccCCCEEEecccccCCCCcCCCHHHHHHHHhccCCcCeEEeCCHHHHHHHhCCCCC
Confidence 67888885443 35555566666667889999991 12234444 8899999999999999999842
Q ss_pred --ChHHHHHHHHHcCCCCcEEEEeecCC----ce--EEEeeccCCCCchhhhhhhHHHHHHhhhcCCCCCCccccchhhh
Q 046789 178 --SVPSALVSMLLRLPNLRFAIVTLGED----GC--IMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVPTCISSLET 249 (336)
Q Consensus 178 --~~~~~~~~~l~~~~~~~~vvvt~G~~----G~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~ 249 (336)
.....+++.+.. .|.+.||||.++. +. -++..+
T Consensus 140 ~~~~~~~~~~~l~~-~G~~~VvItg~~~~~~~~~~~~~l~~~-------------------------------------- 180 (246)
T PF08543_consen 140 SEEDIEEAAKALLA-LGPKNVVITGGHLDGDEGIITDVLYDG-------------------------------------- 180 (246)
T ss_dssp SHHHHHHHHHHHHH-TS-SEEEEEEEEGGSSCEEEEEEEETT--------------------------------------
T ss_pred ChHhHHHHHHHHHH-hCCceEEEeeeccccccccccceeeec--------------------------------------
Confidence 223455666666 4999999998763 11 111111
Q ss_pred hhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhcc
Q 046789 250 RLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCR 316 (336)
Q Consensus 250 ~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~~ 316 (336)
++.+.-.. +.....+..|.||.|.++++..|++|+++++|+..|...-...++
T Consensus 181 -----------~~~~~~~~---~~~~~~~~~GTGd~fss~laa~l~~g~~l~~Av~~A~~~v~~~i~ 233 (246)
T PF08543_consen 181 -----------GEFYWLSS---PRIPTGSFHGTGDLFSSALAAFLAKGYSLEEAVEKAKNFVRRAIK 233 (246)
T ss_dssp -----------SEEEEEEE---EEECTSGCTTHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHH
T ss_pred -----------cceeecce---eEEcCCCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 11111112 222235789999999999999999999999999999888777665
No 72
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=98.92 E-value=1.3e-08 Score=90.25 Aligned_cols=218 Identities=16% Similarity=0.181 Sum_probs=132.1
Q ss_pred ceEEEeecCChhh-HHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCeeEEEecCCCCCCCCcccchhhHhhhccC
Q 046789 36 PRIISKIADDPQG-KGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHTPGDPPMIPDDLSESTIFSALDG 114 (336)
Q Consensus 36 v~~i~~vG~D~~g-~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~ 114 (336)
...++.-|.|+.| --|+..|+..-. ..+ ...+-.+.+...+. .....++ ++.++.+.. .+...+.+
T Consensus 4 ~~~LtIAGsD~sGGAGIqADLKTf~a--~gv----yg~saITaltaQNt-~gV~~v~-----~v~~~~v~~-Ql~av~~D 70 (263)
T COG0351 4 PVVLTIAGSDSSGGAGIQADLKTFQA--LGV----YGMSAITALTAQNT-LGVHGVH-----PVPPEFVEA-QLDAVFSD 70 (263)
T ss_pred ceEEEEeccCCCccHHHHHHHHHHHh--cCC----ccceEEEEEEEeec-CceeeEE-----eCCHHHHHH-HHHHHhhc
Confidence 4677888888775 558777764421 111 11122222222221 2122222 233344443 23334444
Q ss_pred C--cEEEEcCC-cHHHHHHHHHHHHhCC-CcEEEeCC------------cchH-hHHHhhhcCcEEecCcccchhhcCC-
Q 046789 115 A--RILYLDGR-LPDTAIIVAQEAARKN-IPILIDTE------------RQRE-RIDEFLKLASYAVCSAKFPQVWTEA- 176 (336)
Q Consensus 115 ~--~~i~~~~~-~~~~~~~~~~~a~~~~-~~v~~d~~------------~~~~-~~~~~l~~~dil~~n~~e~~~l~~~- 176 (336)
. +.+=+... .++.+..+.+..++++ .++++||. +..+ ....+++.++++.+|..|+..|.+.
T Consensus 71 ~~v~avKtGML~~~eiie~va~~l~~~~~~~vV~DPVmvaksG~~Ll~~~a~~~l~~~LlP~a~vvTPNl~EA~~L~g~~ 150 (263)
T COG0351 71 IPVDAVKTGMLGSAEIIEVVAEKLKKYGIGPVVLDPVMVAKSGDPLLDEEAVEALREELLPLATVVTPNLPEAEALSGLP 150 (263)
T ss_pred CCCCEEEECCcCCHHHHHHHHHHHHhcCCCcEEECceEEEcCCCcccChHHHHHHHHHhhccCeEecCCHHHHHHHcCCC
Confidence 4 34444333 2466666777778888 78999991 2223 3347889999999999999999984
Q ss_pred CC----hHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhhhcCCCCCCccccchhhhhhh
Q 046789 177 PS----VPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVPTCISSLETRLR 252 (336)
Q Consensus 177 ~~----~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~ 252 (336)
+- +.+++++.+.. .|.+.||++-|+..- ..
T Consensus 151 ~i~~~~d~~~a~~~i~~-~g~~~VliKGGH~~~--~~------------------------------------------- 184 (263)
T COG0351 151 KIKTEEDMKEAAKLLHE-LGAKAVLIKGGHLEG--EA------------------------------------------- 184 (263)
T ss_pred ccCCHHHHHHHHHHHHH-hCCCEEEEcCCCCCC--Cc-------------------------------------------
Confidence 21 12333444544 499999999887542 00
Q ss_pred ccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhcc
Q 046789 253 AEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCR 316 (336)
Q Consensus 253 ~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~~ 316 (336)
..+.|..+.+| .++.+..+-.++.|.|++|.+++.+.|++|.++++|++.|-..-...++
T Consensus 185 -~D~l~~~~~~~---~f~~~ri~t~~tHGTGCTlSaAIaa~LA~G~~l~~AV~~Ak~fv~~AI~ 244 (263)
T COG0351 185 -VDVLYDGGSFY---TFEAPRIPTKNTHGTGCTLSAAIAANLAKGLSLEEAVKKAKEFVTRAIR 244 (263)
T ss_pred -eeEEEcCCceE---EEeccccCCCCCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 00111111122 2222556667899999999999999999999999999999888777776
No 73
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=98.92 E-value=1.4e-08 Score=90.58 Aligned_cols=152 Identities=16% Similarity=0.087 Sum_probs=99.7
Q ss_pred HhhhccCCcEEEEcCCc-H----HHHHHHHHHHHhCCCcEEEeCC-----cc-hHhHHHhhhc--CcEEecCcccchhhc
Q 046789 108 IFSALDGARILYLDGRL-P----DTAIIVAQEAARKNIPILIDTE-----RQ-RERIDEFLKL--ASYAVCSAKFPQVWT 174 (336)
Q Consensus 108 ~~~~l~~~~~i~~~~~~-~----~~~~~~~~~a~~~~~~v~~d~~-----~~-~~~~~~~l~~--~dil~~n~~e~~~l~ 174 (336)
..+.++.+|.+++.... . +.+...++.+++.++|+++|+. .. .+....++.. +|++.+|..|+..|+
T Consensus 43 ~~~~l~~~d~vvi~~G~l~~~~~~~i~~~~~~~~~~~~pvVlDp~~~~~~~~~~~~~~~ll~~~~~~ilTPN~~Ea~~L~ 122 (242)
T cd01170 43 VEELAKIAGALVINIGTLTSEQIEAMLKAGKAANQLGKPVVLDPVGVGATSFRTEVAKELLAEGQPTVIRGNASEIAALA 122 (242)
T ss_pred HHHHHHHcCcEEEeCCCCChHHHHHHHHHHHHHHhcCCCEEEcccccCcchhHHHHHHHHHhcCCCeEEcCCHHHHHHHh
Confidence 45668899999997432 2 3344555568888999999994 11 1223455554 899999999999998
Q ss_pred CCCC-------------hHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhhhcCCCCCCc
Q 046789 175 EAPS-------------VPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVP 241 (336)
Q Consensus 175 ~~~~-------------~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp 241 (336)
+.+. .....++.+....+. .|++| |.... +++.++.. ++|
T Consensus 123 g~~~~~~~~~~~~~~~~~~~~aa~~l~~~~~~-~Vllk-G~~d~-l~~~~~~~------------------------~~~ 175 (242)
T cd01170 123 GLTGLGKGVDSSSSDEEDALELAKALARKYGA-VVVVT-GEVDY-ITDGERVV------------------------VVK 175 (242)
T ss_pred CCCCCcCcccCCCcchHHHHHHHHHHHHHhCC-EEEEE-CCCcE-EEECCEEE------------------------EEe
Confidence 7531 123344444444344 68888 55444 33322211 221
Q ss_pred cccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhc
Q 046789 242 TCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGC 315 (336)
Q Consensus 242 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~ 315 (336)
. .+..+.++.|+||+|.|.+...+++|.++.+|+..|...-+.+.
T Consensus 176 --------------------------~---~~~~~~~v~GtGdtLa~aiAa~LA~g~~~~~A~~~A~~~~~~a~ 220 (242)
T cd01170 176 --------------------------N---GHPLLTKITGTGCLLGAVIAAFLAVGDDPLEAAVSAVLVYGIAG 220 (242)
T ss_pred --------------------------C---CCccccCCCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 2 23334556899999999999999999999999998866555444
No 74
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=98.88 E-value=1.9e-07 Score=83.42 Aligned_cols=207 Identities=17% Similarity=0.132 Sum_probs=125.6
Q ss_pred EEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCeeEEEecCCCCCCCCcccch--hhHhh--hcc
Q 046789 38 IISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHTPGDPPMIPDDLSE--STIFS--ALD 113 (336)
Q Consensus 38 ~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~e~~~~--~~~~~--~l~ 113 (336)
..|.+|+ . ...--|+..|+++..++ ++.+....|.-+ ..+ ..+.+|++.. +.+.. .+.
T Consensus 11 v~G~vGn-~---AA~f~lq~~G~~V~~vp---------TV~fSnHtgyg~----~~g-~v~~~e~l~~~l~~l~~~~~~~ 72 (281)
T COG2240 11 VYGSVGN-S---AAIFPLQRLGLDVWAVP---------TVQFSNHTGYGK----WTG-IVMPPEQLADLLNGLEAIDKLG 72 (281)
T ss_pred eeccccc-H---hHHHHHHHcCCceeeec---------eEEecCCCCCCC----CCC-cCCCHHHHHHHHHHHHhccccc
Confidence 3455665 2 23336677788766542 233332222111 111 3455566665 22333 456
Q ss_pred CCcEEEEcCCcH-----HHHHHHHHHHHhC--CCcEEEeCC-----------c-chHhHHHhhhcCcEEecCcccchhhc
Q 046789 114 GARILYLDGRLP-----DTAIIVAQEAARK--NIPILIDTE-----------R-QRERIDEFLKLASYAVCSAKFPQVWT 174 (336)
Q Consensus 114 ~~~~i~~~~~~~-----~~~~~~~~~a~~~--~~~v~~d~~-----------~-~~~~~~~~l~~~dil~~n~~e~~~l~ 174 (336)
.+|.++. |+++ ..+..+++..++. +..+++||. . .....+.+++.+|++.+|..|++.|+
T Consensus 73 ~~davlt-GYlgs~~qv~~i~~~v~~vk~~~P~~~~l~DPVMGD~gglYV~~~~~~~~~~~lip~AdiiTPN~fELe~Lt 151 (281)
T COG2240 73 ECDAVLT-GYLGSAEQVRAIAGIVKAVKEANPNALYLCDPVMGDPGGLYVAPEVAEAYRDELLPLADIITPNIFELEILT 151 (281)
T ss_pred ccCEEEE-ccCCCHHHHHHHHHHHHHHhccCCCeEEEeCCcccCCCceeeccchHHHHHHhhcchhhEeCCCHHHHHHHh
Confidence 6776654 6653 3445666666665 445889991 2 22233468899999999999999998
Q ss_pred CCC----ChHHHHHHHHHcCCCCcEEEEeecCC-----ceEEEeeccCCCCchhhhhhhHHHHHHhhhcCCCCCCccccc
Q 046789 175 EAP----SVPSALVSMLLRLPNLRFAIVTLGED-----GCIMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVPTCIS 245 (336)
Q Consensus 175 ~~~----~~~~~~~~~l~~~~~~~~vvvt~G~~-----G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~ 245 (336)
+.+ +...++++.+.. .+++.+|||.=.. |.+++...... .
T Consensus 152 g~~~~~~~da~~aa~~L~~-~gp~~vlVTS~~~~~~~~~~~~~~~~~~~------------------------~------ 200 (281)
T COG2240 152 GKPLNTLDDAVKAARKLGA-DGPKIVLVTSLSRAGMSTGNFEMLGKSAE------------------------L------ 200 (281)
T ss_pred CCCCCCHHHHHHHHHHHhh-cCCCEEEEecccccCCCCceEEEeccchh------------------------h------
Confidence 864 233445555555 5899999995433 33333332221 0
Q ss_pred hhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhcc
Q 046789 246 SLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCR 316 (336)
Q Consensus 246 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~~ 316 (336)
.+ .+ .+.-..+.+|.||.|.|.|++.+++|.++.+++..+..+-...++
T Consensus 201 ----------------~~----h~--~~~v~~~~~GtGDL~sallla~lL~g~~~~~al~~~~~~V~evl~ 249 (281)
T COG2240 201 ----------------AW----HI--SPLVPFIPNGTGDLFSALLLARLLEGLSLTQALERATAAVYEVLQ 249 (281)
T ss_pred ----------------hh----hh--hhcCCCCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 00 11 111123499999999999999999999999999999877766655
No 75
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=98.59 E-value=1.4e-06 Score=78.82 Aligned_cols=162 Identities=14% Similarity=0.054 Sum_probs=99.3
Q ss_pred CCCCCcccchhhHhhhccCCcEEEEcCCc-H-H---HHHHHHHHHHhCCCcEEEeCCc-----ch-HhHHHhhh--cCcE
Q 046789 96 PPMIPDDLSESTIFSALDGARILYLDGRL-P-D---TAIIVAQEAARKNIPILIDTER-----QR-ERIDEFLK--LASY 162 (336)
Q Consensus 96 ~~~~~e~~~~~~~~~~l~~~~~i~~~~~~-~-~---~~~~~~~~a~~~~~~v~~d~~~-----~~-~~~~~~l~--~~di 162 (336)
.++..++..+ ..+.++.++.+++..-. . + ....+++.+++.++|+++||.. .+ +....+++ ..++
T Consensus 38 sp~m~~~~~e--~~~~~~~~~alvi~~G~l~~~~~~~i~~~~~~a~~~~~pvVlDpv~~~~~~~~~~~~~~ll~~~~~~v 115 (263)
T PRK09355 38 SPAMAHAPEE--AEEMAKIAGALVINIGTLTEERIEAMLAAGKIANEAGKPVVLDPVGVGATSYRTEFALELLAEVKPAV 115 (263)
T ss_pred CcccCCCHHH--HHHHHHhcCceEEeCCCCCHHHHHHHHHHHHHHHhcCCCEEECCcccCcchhhHHHHHHHHHhcCCcE
Confidence 3444443433 45667788888885333 2 2 2344556678889999999942 11 22233444 5799
Q ss_pred EecCcccchhhcCCCC------------hHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHH
Q 046789 163 AVCSAKFPQVWTEAPS------------VPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQL 230 (336)
Q Consensus 163 l~~n~~e~~~l~~~~~------------~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (336)
+.+|..|+..|.+.+. .....++.+.+..+ ..+++|-+.+ ++++.+...
T Consensus 116 ItPN~~E~~~L~g~~~~~~~vd~~~~~~~~~~~a~~la~~~~-~~VvvkG~~d--~I~~~~~~~---------------- 176 (263)
T PRK09355 116 IRGNASEIAALAGEAAETKGVDSTDGSADAVEIAKAAAKKYG-TVVVVTGEVD--YITDGERVV---------------- 176 (263)
T ss_pred ecCCHHHHHHHhCCCcccCCcCCCCCHHHHHHHHHHHHHHhC-CEEEEECCCc--EEEeCCEEE----------------
Confidence 9999999999987531 22344455555434 4677775443 222221111
Q ss_pred hhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHH
Q 046789 231 KQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQV 310 (336)
Q Consensus 231 ~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~ 310 (336)
.++ . ......+.+|+||++.|.+...++.|.++.+++..|...
T Consensus 177 --------~~~--------------------------~---g~~~~~~v~GtGc~L~~~iaa~lA~g~~~~~A~~~A~~~ 219 (263)
T PRK09355 177 --------SVH--------------------------N---GHPLMTKVTGTGCLLSAVVAAFAAVEKDYLEAAAAACAV 219 (263)
T ss_pred --------EEe--------------------------C---CCcccCCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 000 1 112234559999999999999999999999988887765
Q ss_pred HHhhc
Q 046789 311 AAAGC 315 (336)
Q Consensus 311 Aa~~~ 315 (336)
-+.+-
T Consensus 220 ~~~a~ 224 (263)
T PRK09355 220 YGIAG 224 (263)
T ss_pred HHHHH
Confidence 54443
No 76
>PTZ00493 phosphomethylpyrimidine kinase; Provisional
Probab=98.50 E-value=1e-06 Score=81.18 Aligned_cols=233 Identities=14% Similarity=0.087 Sum_probs=121.9
Q ss_pred ceEEEeecCChhh-HHHHHHHHHc---CCcccceEEeCCCCccEEEEEEcCCCCeeEEEecCCCCCCCCcccchhhHhhh
Q 046789 36 PRIISKIADDPQG-KGIREEFEAD---GVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHTPGDPPMIPDDLSESTIFSA 111 (336)
Q Consensus 36 v~~i~~vG~D~~g-~~i~~~l~~~---gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~ 111 (336)
...++.-|.|+.| .-|...++.. |+- .. +-.+.+...+..+ ...+. .+.++.+.. .+...
T Consensus 5 p~VLtIAGsDpsGGAGiqADlkt~~alGv~--g~-------sviTalTaQnt~~-V~~v~-----~v~~~~i~~-Ql~al 68 (321)
T PTZ00493 5 SNILSIAGSDSCGGAGMQADIKTAMGLGCH--CC-------TALVVLTAQNTKE-VKRIV-----EIEEKFIVE-QLDSI 68 (321)
T ss_pred CEEEEEeeeCCCCchHHHHHHHHHHHcCCc--cc-------eEEEEEEEEcCCc-eEEEE-----ECCHHHHHH-HHHHH
Confidence 4567778888765 4477666533 321 11 2222233322211 11111 233333333 23344
Q ss_pred ccCC--cEEEEcCCcH-HHHHHHHHHHHhC------CCcEEEeCC----------cchHhH----HHhhhcCcEEecCcc
Q 046789 112 LDGA--RILYLDGRLP-DTAIIVAQEAARK------NIPILIDTE----------RQRERI----DEFLKLASYAVCSAK 168 (336)
Q Consensus 112 l~~~--~~i~~~~~~~-~~~~~~~~~a~~~------~~~v~~d~~----------~~~~~~----~~~l~~~dil~~n~~ 168 (336)
+.+. +.+=+..... +.+..+.+..++. ..++++||. ...+.+ ..+++.++++.+|..
T Consensus 69 l~D~~i~aIKiGmL~s~e~i~~v~~~l~~~~~~~~~~~~vVlDPVl~sssG~~L~~~~~~~~~~~~~Llp~a~viTPN~~ 148 (321)
T PTZ00493 69 FADVTIDVVKLGVLYSKKIISLVHNYITNMNKKRGKKLLVVFDPVFVSSSGCLLVENLEYIKFALDLICPISCIITPNFY 148 (321)
T ss_pred HhCCCCCEEEECCcCCHHHHHHHHHHHHHhcccccCCCeEEECCceEECCCCccCCcHHHHHHHHHHhhccCEEECCCHH
Confidence 4443 5666644432 4444444444433 224899992 111222 458899999999999
Q ss_pred cchhhcC-----CC-C--hHHHHHHHHHcCCCCcEEEEeecCCc------e------EEEeec-cCCCCchhhhhhhHHH
Q 046789 169 FPQVWTE-----AP-S--VPSALVSMLLRLPNLRFAIVTLGEDG------C------IMLERS-VNESPELEEIDVDSLL 227 (336)
Q Consensus 169 e~~~l~~-----~~-~--~~~~~~~~l~~~~~~~~vvvt~G~~G------~------~~~~~~-~~~~~~~~~~~~~~~~ 227 (336)
|+..|.+ .. . ..+.+++.+....|.+.|++|-|+.. . +++.++ +.+. ..++
T Consensus 149 Ea~~L~g~~~~~~~~~~~~~~~aA~~l~~~~G~~~VliKGGh~~~~~~~~~~~~~~D~l~~~~~~~~~-~~~~------- 220 (321)
T PTZ00493 149 ECKVILEALDCQMDLSKANMTELCKLVTEKLNINACLFKSCNVGENSAEENEVYAVDHLCIRNVGSYP-TGEK------- 220 (321)
T ss_pred HHHHHhCCCcccCCCCHHHHHHHHHHHHHhcCCCEEEECcCCCcccccccccccceeEEecCCccccc-cccc-------
Confidence 9999886 21 1 12344555554349999999988742 0 111100 0000 0000
Q ss_pred HHHhhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHH
Q 046789 228 EQLKQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFA 307 (336)
Q Consensus 228 ~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a 307 (336)
.+..+ .|..+ ..++++-.. +.....++.|.||+|.+++++.|++|+++++|+..|
T Consensus 221 ---------~~~~~------------~~~~~-~~~~~~~~~---~ri~~~~~hGTGc~fASAIAa~LA~G~~l~~Av~~A 275 (321)
T PTZ00493 221 ---------QQIDA------------GGVTY-LYDVYKLRS---KRKPGKDIHGTGCTLSTAIACYLAKKHNILQSCIES 275 (321)
T ss_pred ---------ccccc------------ccccc-cceEEEEEe---cccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 00000 00000 001121112 333345679999999999999999999999999999
Q ss_pred HHHHHhhccc
Q 046789 308 AQVAAAGCRA 317 (336)
Q Consensus 308 ~~~Aa~~~~~ 317 (336)
...-..++..
T Consensus 276 ~~fv~~aI~~ 285 (321)
T PTZ00493 276 KKYIYNCIRY 285 (321)
T ss_pred HHHHHHHHHH
Confidence 8776666654
No 77
>TIGR00694 thiM hydroxyethylthiazole kinase. This model represents the hydoxyethylthiazole kinase, ThiM, of a number of bacteria, and C-terminal domains of bifunctional thiamine biosynthesis proteins of Saccharomyces cerevisiae and Schizosaccharomyces pombe, in which the N-terminal domain corresponds to the bacterial thiamine-phosphate pyrophosphorylase (EC 2.5.1.3), ThiE.
Probab=98.39 E-value=4.5e-06 Score=74.89 Aligned_cols=158 Identities=13% Similarity=0.067 Sum_probs=95.0
Q ss_pred CCCCCcccchhhHhhhccCCcEEEEcCCc-H----HHHHHHHHHHHhCCCcEEEeCCc------chHhHHHhhh--cCcE
Q 046789 96 PPMIPDDLSESTIFSALDGARILYLDGRL-P----DTAIIVAQEAARKNIPILIDTER------QRERIDEFLK--LASY 162 (336)
Q Consensus 96 ~~~~~e~~~~~~~~~~l~~~~~i~~~~~~-~----~~~~~~~~~a~~~~~~v~~d~~~------~~~~~~~~l~--~~di 162 (336)
.++..++.++ ..+.++.++.+++..-. . +....+++.+++.++|+++||.. .......+++ ..++
T Consensus 33 sp~m~~~~~e--~~~~~~~~~al~ik~G~l~~~~~~~i~~~~~~~~~~~~pvVlDPV~~~~s~~r~~~~~~Ll~~~~~~v 110 (249)
T TIGR00694 33 SPVMSEAEEE--VAELAKIAGALVINIGTLDKESIEAMIAAGKSANELGVPVVLDPVGVGATKFRTETALELLSEGRFAA 110 (249)
T ss_pred ChhhcCCHHH--HHHHHHHcCceEEeCCCCCHHHHHHHHHHHHHHHhcCCCEEEcccccccchhHHHHHHHHHhhcCCce
Confidence 3444443333 45566777888875332 2 23345566677789999999931 1123345665 4799
Q ss_pred EecCcccchhhcCCC------------ChHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHH
Q 046789 163 AVCSAKFPQVWTEAP------------SVPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQL 230 (336)
Q Consensus 163 l~~n~~e~~~l~~~~------------~~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (336)
+.+|..|+..|.+.. ......++.+.+..+. .|++|-+.+ ++++.+...
T Consensus 111 ITpN~~E~~~L~g~~~~~~gvd~~~~~~d~~~~a~~la~~~~~-~VllkG~~D--~i~~~~~~~---------------- 171 (249)
T TIGR00694 111 IRGNAGEIASLAGETGLMKGVDSGEGAADAIRAAQQAAQKYGT-VVVITGEVD--YVSDGTSVY---------------- 171 (249)
T ss_pred eCCCHHHHHHHhCCCCCCCCcCCccchHHHHHHHHHHHHHhCC-EEEEECCCc--EEEeCCEEE----------------
Confidence 999999999998743 1122344455554344 677765432 333322111
Q ss_pred hhhcCCCCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHH
Q 046789 231 KQRKDDRAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQV 310 (336)
Q Consensus 231 ~~~~~~~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~ 310 (336)
.+. .. .+. .-..+|.||++.+.+.+.++.|.++.+|+..|...
T Consensus 172 --------~~~-------------------------~g---~~~-~~~~~GtGc~LssaIaa~LA~g~~~~~A~~~A~~~ 214 (249)
T TIGR00694 172 --------TIH-------------------------NG---TEL-LGKITGSGCLLGSVVAAFCAVEEDPLDAAISACLL 214 (249)
T ss_pred --------EEC-------------------------CC---ChH-HhCCccchHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 000 01 111 11247999999999999999999999998888643
Q ss_pred H
Q 046789 311 A 311 (336)
Q Consensus 311 A 311 (336)
-
T Consensus 215 ~ 215 (249)
T TIGR00694 215 Y 215 (249)
T ss_pred H
Confidence 3
No 78
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=97.53 E-value=0.0087 Score=57.63 Aligned_cols=189 Identities=10% Similarity=0.039 Sum_probs=96.5
Q ss_pred eEEecCCchHHHHHHHHHcCCCceE-EEeecCChhhHHHHHHHHHcCCcccce-----EEe-------CCCCccEEEEEE
Q 046789 14 IVVQGGGNAGNALTCAARLGLNPRI-ISKIADDPQGKGIREEFEADGVDTSFL-----VVS-------KEGNSPFTYVIV 80 (336)
Q Consensus 14 ~~~~~GG~a~n~a~~l~~LG~~v~~-i~~vG~D~~g~~i~~~l~~~gv~~~~i-----~~~-------~~~~t~~~~~~~ 80 (336)
.++..||.|..+|..++.+|.++++ .+.. .++...+.+...++-.-.. ..+ .....-..+++=
T Consensus 86 ~~~rmGGnAgimAn~la~lg~~~Vi~~~~~----lsk~q~~lf~~~~i~~p~~~~~~~l~~~~~~~a~~~~~d~IH~IfE 161 (453)
T PRK14039 86 SEIRMGGNAGIMANVLSELGASRVVPNVAV----PSKTQLSLFSKKAVYFPGMPLQASETDGEKVGASSSDQEPIHFVFD 161 (453)
T ss_pred ceEEeCChHHHHHHHHHhcCCceEEEcCCC----CCHHHHHhcCCCCEEeccccccccccCccccccccCCCCCceEEEE
Confidence 3489999999999999999998655 3322 2234445553222221110 000 011111122211
Q ss_pred cCCC--------------CeeEEEecCC-CCCC-CCcccchhhHhhhccCCcEEEEcCCcH------------H---HHH
Q 046789 81 DNQM--------------KTRTCIHTPG-DPPM-IPDDLSESTIFSALDGARILYLDGRLP------------D---TAI 129 (336)
Q Consensus 81 ~~~g--------------~~~~~~~~~~-~~~~-~~e~~~~~~~~~~l~~~~~i~~~~~~~------------~---~~~ 129 (336)
-..| .+|+.+.... +..+ ..+++. +.+.+.....|.++++|.-. + ...
T Consensus 162 y~~G~~~~l~~~~~~aPRaNRfI~s~D~~N~~l~i~e~f~-~~l~e~~~~~D~avlSG~q~l~d~y~dg~~~~e~l~~~~ 240 (453)
T PRK14039 162 FREGETFSLYGTRIRAPRENRFIATFDHLNFRLFINPAFE-QYALEHAGEMDGALISGFHLLLETYPDGSTYREKLEDSL 240 (453)
T ss_pred eCCCCEEecCCccEecCCCCeEEEecCCCCccceecHHHH-HHHHhhccCCCEEEEechhhhhhhcCCcccHHHHHHHHH
Confidence 1111 1333333221 1122 112222 22334445789999988731 1 222
Q ss_pred HHHHHH--HhCCCcEEEeCC------cchHhHHHhhhcCcEEecCcccchhhcCCCC---------hHH---HHHHHHHc
Q 046789 130 IVAQEA--ARKNIPILIDTE------RQRERIDEFLKLASYAVCSAKFPQVWTEAPS---------VPS---ALVSMLLR 189 (336)
Q Consensus 130 ~~~~~a--~~~~~~v~~d~~------~~~~~~~~~l~~~dil~~n~~e~~~l~~~~~---------~~~---~~~~~l~~ 189 (336)
+.++.. ...++++-++.. -....+..+++++|.+.+|++|...+...-. ..+ +.+..+..
T Consensus 241 ~~i~~l~~~~~~i~iH~E~As~~~~~i~~~v~~~Ilp~VDSlGmNEqELa~l~~~~g~~~~~i~~~~~~~v~ea~~~l~~ 320 (453)
T PRK14039 241 AQLKWWKSKNEKLRIHAELGHFASKEIANSVFLILAGIVDSIGMNEDELAMLANLHGIPAEGILEMNAEAIGEAACQLAS 320 (453)
T ss_pred HHHHHHHhcCCCceEEEEecCcccHHHHHHHHHHhhcccccccCCHHHHHHHHHHcccchhhHhhcCHHHHHHHHHHHHH
Confidence 333333 235678888873 1234555788999999999999986654311 011 22333444
Q ss_pred CCCCcEEEEeecCCceEEEe
Q 046789 190 LPNLRFAIVTLGEDGCIMLE 209 (336)
Q Consensus 190 ~~~~~~vvvt~G~~G~~~~~ 209 (336)
..+++.++|+. .+.+++-
T Consensus 321 ~~~le~l~vHT--~~y~l~i 338 (453)
T PRK14039 321 ESGLQRLIIHT--REFVLCV 338 (453)
T ss_pred HcCCCEEEEEe--cceEEEE
Confidence 45888888764 3554443
No 79
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=97.24 E-value=0.043 Score=52.84 Aligned_cols=99 Identities=12% Similarity=-0.024 Sum_probs=58.6
Q ss_pred HhhhccCCcEEEEcCCcH---------------HHHHHHHHHH-HhCCCcEEEeCC------cchHhHHHhhhcCcEEec
Q 046789 108 IFSALDGARILYLDGRLP---------------DTAIIVAQEA-ARKNIPILIDTE------RQRERIDEFLKLASYAVC 165 (336)
Q Consensus 108 ~~~~l~~~~~i~~~~~~~---------------~~~~~~~~~a-~~~~~~v~~d~~------~~~~~~~~~l~~~dil~~ 165 (336)
+.+....+|.++++|.-. +...+.++.. .+.++++-++.. -....+..+++++|.+.+
T Consensus 203 ~~~i~~~~d~~vlSG~q~m~~~y~dg~~~~~~~er~~~~i~~L~~~~~i~iH~E~As~~~~~l~~~i~~~ilp~vDSlGM 282 (446)
T TIGR02045 203 LPEIGEPVDGAILSGYQGIKEEYSDGKTAKYYLERAKEDIELLKKNKDLKIHVEFASIQNREIRKKVVTNIFPHVDSVGM 282 (446)
T ss_pred hhhhhhcccEEEEEchhhhhhhccCCccHhHHHHHHHHHHHHHhhCCCCeEEEEecccccHHHHHHHHHhhccccccccC
Confidence 344456789999988631 1223344443 247788888873 122344578899999999
Q ss_pred Ccccchhhc---CC----------CCh--HHHHHHHHHcCCCCcEEEEeecCCceEEE
Q 046789 166 SAKFPQVWT---EA----------PSV--PSALVSMLLRLPNLRFAIVTLGEDGCIML 208 (336)
Q Consensus 166 n~~e~~~l~---~~----------~~~--~~~~~~~l~~~~~~~~vvvt~G~~G~~~~ 208 (336)
|+.|...+. +. ... .-..+..+....+++.+.++. .+.+++
T Consensus 283 NE~ELa~ll~~lg~~~l~~~i~~~~~i~~vi~a~~~l~~~~~leri~vHT--~~y~l~ 338 (446)
T TIGR02045 283 DEAEIANVLSVLGYDELSDRIFRYNRIEDLILGAKILLDELNLEVVQVHT--IYYIMY 338 (446)
T ss_pred CHHHHHHHHHHhcCCchhhhhhccccHHHHHHHHHHHHHHcCCCEEEEEe--cceeEE
Confidence 999998654 22 111 112233444445888887764 344443
No 80
>PRK03979 ADP-specific phosphofructokinase; Provisional
Probab=97.10 E-value=0.021 Score=55.19 Aligned_cols=65 Identities=12% Similarity=-0.059 Sum_probs=41.7
Q ss_pred hhccCCcEEEEcCCcH---------------HHHHHHHHHH--HhCCCcEEEeCC-----c-chHhHHHhhhcCcEEecC
Q 046789 110 SALDGARILYLDGRLP---------------DTAIIVAQEA--ARKNIPILIDTE-----R-QRERIDEFLKLASYAVCS 166 (336)
Q Consensus 110 ~~l~~~~~i~~~~~~~---------------~~~~~~~~~a--~~~~~~v~~d~~-----~-~~~~~~~~l~~~dil~~n 166 (336)
+.-...|.++++|.-. +...+.++.. ...++++-++.. . ....+..+++++|.+.+|
T Consensus 218 ei~~~~D~avlSG~q~i~~~y~dg~~~~~~l~r~~~~i~~L~~~~~~i~iH~E~As~~~~~ir~~i~~~ilp~vDSlGmN 297 (463)
T PRK03979 218 EIGKMVDGAILSGYQGIKEEYSDGKTAEYYLKRAKEDIKLLKKKNKDIKIHVEFASIQNREIRKKIITYILPHVDSVGMD 297 (463)
T ss_pred hhccCCCEEEEechhhhhccccccccHHHHHHHHHHHHHHHhhCCCCceEEEEeccccCHHHHHHHHHhhccccccccCC
Confidence 3345689999988731 1122233333 346788888873 1 223445788999999999
Q ss_pred cccchhhc
Q 046789 167 AKFPQVWT 174 (336)
Q Consensus 167 ~~e~~~l~ 174 (336)
+.|...+.
T Consensus 298 E~ELa~l~ 305 (463)
T PRK03979 298 ETEIANIL 305 (463)
T ss_pred HHHHHHHH
Confidence 99997543
No 81
>KOG2598 consensus Phosphomethylpyrimidine kinase [Coenzyme transport and metabolism; Transcription]
Probab=97.04 E-value=0.0095 Score=56.14 Aligned_cols=169 Identities=17% Similarity=0.136 Sum_probs=102.8
Q ss_pred HhhhccCC--cEEEEcCCcH-HHHHHHHHH-HHh-CCCcEEEeCC-------------cchHhHHHhhhcCcEEecCccc
Q 046789 108 IFSALDGA--RILYLDGRLP-DTAIIVAQE-AAR-KNIPILIDTE-------------RQRERIDEFLKLASYAVCSAKF 169 (336)
Q Consensus 108 ~~~~l~~~--~~i~~~~~~~-~~~~~~~~~-a~~-~~~~v~~d~~-------------~~~~~~~~~l~~~dil~~n~~e 169 (336)
+...+++. +++-. |.++ ..+..++.+ +.. +-.++++||. -..-..+++++++|++.+|.-|
T Consensus 84 idacL~Di~C~VvKT-GML~~~~I~~vi~q~l~~~~~~klVvDPVivatsG~~l~~~divsl~~e~l~P~adiltPNI~E 162 (523)
T KOG2598|consen 84 IDACLSDIKCDVVKT-GMLPSPEIVKVIEQSLQKFNIPKLVVDPVIVATSGSSLAGKDIVSLFIEELLPFADILTPNIPE 162 (523)
T ss_pred HHHHhhcCcccEEee-cCcCchHHHHHHHHHHHhhcCcceeecceEEeccCCcccCCccHHHHHHHhhhhHHHhCCChHH
Confidence 44455554 44433 4443 333333332 222 3346889981 1233567889999999999999
Q ss_pred chhhcCCC--------Ch--HHHHHHHHHcCCCCcEEEEeecCCce---EEEeeccCCCCchhhhhhhHHHHHHhhhcCC
Q 046789 170 PQVWTEAP--------SV--PSALVSMLLRLPNLRFAIVTLGEDGC---IMLERSVNESPELEEIDVDSLLEQLKQRKDD 236 (336)
Q Consensus 170 ~~~l~~~~--------~~--~~~~~~~l~~~~~~~~vvvt~G~~G~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (336)
+-.+.+.. +. -+..+..+.+. |.|.|+++.|+-.. ++.+++...
T Consensus 163 a~~Ll~~~~~~~~~i~~v~di~~~~~~ihk~-gpk~VlvkGghiP~~~~~~~s~d~~~---------------------- 219 (523)
T KOG2598|consen 163 AFILLKKEKREISKIQSVFDIAKDAAKIHKL-GPKNVLVKGGHIPFNKNMMTSKDDSD---------------------- 219 (523)
T ss_pred HHHHHhhcccCCcccccHHHHHHHHHHHHhc-CcceEEEeCCCcCccccccccCcccC----------------------
Confidence 98777631 11 23344555554 99999999876432 122222211
Q ss_pred CCCCccccchhhhhhhccCcccccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHHHHhhcc
Q 046789 237 RAAVPTCISSLETRLRAEGIGTVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQVAAAGCR 316 (336)
Q Consensus 237 ~~~vp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~Aa~~~~ 316 (336)
.++ -..++-+.+||. ++-+-..-..+.|.|-+..++.+.-|+.|.|+-+|+..|...-=..++
T Consensus 220 -~~~-------------~DvlydG~~F~~---f~~~~~~t~~tHGtgCtLaSAIASnLA~g~sl~qAv~~ai~yvq~Ai~ 282 (523)
T KOG2598|consen 220 -KYT-------------VDVLYDGKEFYI---FKSPYLATKHTHGTGCTLASAIASNLARGYSLLQAVQGAIEYVQNAIA 282 (523)
T ss_pred -Cce-------------EEEEEecceEEE---ecccccccccccCccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 010 111223345553 333666777899999999999999999999999999988765544444
Q ss_pred c
Q 046789 317 A 317 (336)
Q Consensus 317 ~ 317 (336)
.
T Consensus 283 ~ 283 (523)
T KOG2598|consen 283 I 283 (523)
T ss_pred h
Confidence 3
No 82
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=97.03 E-value=0.0073 Score=53.52 Aligned_cols=89 Identities=15% Similarity=0.134 Sum_probs=57.2
Q ss_pred cCCcEEEEcCCcH-----HHHHHHHHHHHhCC--CcEEEeCC-----------cchHhHHHhh-hcCcEEecCcccchhh
Q 046789 113 DGARILYLDGRLP-----DTAIIVAQEAARKN--IPILIDTE-----------RQRERIDEFL-KLASYAVCSAKFPQVW 173 (336)
Q Consensus 113 ~~~~~i~~~~~~~-----~~~~~~~~~a~~~~--~~v~~d~~-----------~~~~~~~~~l-~~~dil~~n~~e~~~l 173 (336)
...+.+ ++|+.| ..+..+++..++.+ ..-++||. +.-+..++++ +.+|++.+|.-|++.|
T Consensus 80 ~~Y~~v-LTGY~~n~~~l~~i~~iv~~lk~~np~~~wv~DPVmGDnG~lYV~eelipvYr~~i~~ladiiTPNqFE~EiL 158 (308)
T KOG2599|consen 80 NKYDAV-LTGYLPNVSFLQKIADIVKKLKKKNPNLTWVCDPVMGDNGRLYVPEELIPVYRDLIIPLADIITPNQFEAEIL 158 (308)
T ss_pred ccccee-eeeccCChhHHHHHHHHHHHHHhcCCCeEEEeCccccCCccEeccHHHHHHHHHhhcchhhhcCCcchhhhhh
Confidence 344443 456665 34445666666544 45678981 2334455555 5599999999999999
Q ss_pred cCCCC----hHHHHHHHHHcCCCCcEEEEeecCC
Q 046789 174 TEAPS----VPSALVSMLLRLPNLRFAIVTLGED 203 (336)
Q Consensus 174 ~~~~~----~~~~~~~~l~~~~~~~~vvvt~G~~ 203 (336)
+|.+- +..++...++++ +++.+|||...-
T Consensus 159 tg~~I~t~eda~~a~~~lhq~-~v~~vVITS~~~ 191 (308)
T KOG2599|consen 159 TGMEIRTEEDAKRAVEKLHQK-GVKTVVITSFDL 191 (308)
T ss_pred cCCeeccHHHHHHHHHHHHHh-CCCEEEEEeeee
Confidence 98642 334455666665 799999996543
No 83
>PRK10565 putative carbohydrate kinase; Provisional
Probab=96.54 E-value=0.054 Score=53.67 Aligned_cols=146 Identities=12% Similarity=0.056 Sum_probs=84.9
Q ss_pred HhhhccCCcEEEEcCCcH--HHHHHHHHHHHhCCCcEEEeCCcchHhHHHh--hhcCcEEecCcccchhhcCCCC-----
Q 046789 108 IFSALDGARILYLDGRLP--DTAIIVAQEAARKNIPILIDTERQRERIDEF--LKLASYAVCSAKFPQVWTEAPS----- 178 (336)
Q Consensus 108 ~~~~l~~~~~i~~~~~~~--~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~--l~~~dil~~n~~e~~~l~~~~~----- 178 (336)
+.+.++.++.+++.+-+. +....+++.+++.++|+++|+... ..+... .....++.+|..|+..|++...
T Consensus 314 ~~~~~~~~~a~viGpGlg~~~~~~~~~~~~~~~~~P~VLDAdaL-~ll~~~~~~~~~~VLTPh~gE~~rL~~~~~~~v~~ 392 (508)
T PRK10565 314 LEESLEWADVVVIGPGLGQQEWGKKALQKVENFRKPMLWDADAL-NLLAINPDKRHNRVITPHPGEAARLLGCSVAEIES 392 (508)
T ss_pred HHHHhhcCCEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEchHH-HHHhhCccccCCeEECCCHHHHHHHhCCChhhhhh
Confidence 334457789999976553 344555677777889999999532 111100 1124689999999999987431
Q ss_pred hHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhhhcCCCCCCccccchhhhhhhccCccc
Q 046789 179 VPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVPTCISSLETRLRAEGIGT 258 (336)
Q Consensus 179 ~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~ 258 (336)
.....++.+.+..+ ..+|+ -|.. .++.+.+... ++.
T Consensus 393 ~~~~~a~~~a~~~~-~~vvl-KG~~-~iI~~~~~~~------------------------~~~----------------- 428 (508)
T PRK10565 393 DRLLSARRLVKRYG-GVVVL-KGAG-TVIAAEPDAL------------------------AII----------------- 428 (508)
T ss_pred hHHHHHHHHHHHhC-CEEEE-eCCC-cEEEcCCceE------------------------EEE-----------------
Confidence 12223344444323 23444 3332 2333321111 110
Q ss_pred ccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHH
Q 046789 259 VSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQV 310 (336)
Q Consensus 259 ~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~ 310 (336)
. .-..-.-++|.||.+.|.+.+-++++.++.+|+..|...
T Consensus 429 ---------~---~G~~~ma~~GsGDvLaGiIaalla~g~~~~~Aa~~a~~l 468 (508)
T PRK10565 429 ---------D---VGNAGMASGGMGDVLSGIIGALLGQKLSPYDAACAGCVA 468 (508)
T ss_pred ---------C---CCCCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1 112234569999999888887788899998888777643
No 84
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=96.50 E-value=0.026 Score=50.24 Aligned_cols=97 Identities=19% Similarity=0.086 Sum_probs=59.0
Q ss_pred HhhhccCCcEEEEcCCc--H---HHHHHHHHHHHhCCCcEEEeCC------cchHhHHHhh--hcCcEEecCcccchhhc
Q 046789 108 IFSALDGARILYLDGRL--P---DTAIIVAQEAARKNIPILIDTE------RQRERIDEFL--KLASYAVCSAKFPQVWT 174 (336)
Q Consensus 108 ~~~~l~~~~~i~~~~~~--~---~~~~~~~~~a~~~~~~v~~d~~------~~~~~~~~~l--~~~dil~~n~~e~~~l~ 174 (336)
..+..+.++.+++.--. + +.....++.+++.++|+++||. ...+...++| ..+++++.|..|...|.
T Consensus 43 ~~e~~~~a~al~iNiGTl~~~~~~~m~~A~~~A~~~~~PvVLDPVgvGas~~R~~~~~~LL~~~~~~vIrGN~sEI~aLa 122 (246)
T PF02110_consen 43 VEEFASIADALVINIGTLTDERIEAMKKAAKAANELGIPVVLDPVGVGASKFRTEFALELLNNYKPTVIRGNASEIAALA 122 (246)
T ss_dssp HHHHHHCTSEEEEESTTSSHHHHHHHHHHHHHHHHTT--EEEE-TTBTTBHHHHHHHHHHHCHS--SEEEEEHHHHHHHH
T ss_pred HHHHHHHcCEEEEECCCCCHhHHHHHHHHHHHHHHcCCCEEEeCcccCCcHHHHHHHHHHHHhCCCcEEEeCHHHHHHHh
Confidence 34556677778775332 2 4556778889999999999993 2345667777 57899999999998887
Q ss_pred CCCC-----------h-HHHHHHHHHcCCCCcEEEEeecCCceE
Q 046789 175 EAPS-----------V-PSALVSMLLRLPNLRFAIVTLGEDGCI 206 (336)
Q Consensus 175 ~~~~-----------~-~~~~~~~l~~~~~~~~vvvt~G~~G~~ 206 (336)
+... . ....++.+.++.+ .+|+-.|+.-.+
T Consensus 123 g~~~~~kGVDs~~~~~~~~~~a~~lA~k~~--~vVvvTG~~D~I 164 (246)
T PF02110_consen 123 GEDSKAKGVDSGDSDEDAIEAAKQLAQKYN--CVVVVTGEVDYI 164 (246)
T ss_dssp TCCCCSCSSSSSCGSHHHHHHHHHHHHHTT--SEEEEESSSEEE
T ss_pred CcCCCCCCcCcCCcchHHHHHHHHHHHhcC--CEEEEecCCcEE
Confidence 6421 1 2345566666433 354545555443
No 85
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=96.42 E-value=0.022 Score=50.81 Aligned_cols=146 Identities=13% Similarity=0.113 Sum_probs=87.1
Q ss_pred HhhhccCCcEEEEcCCcH--HHHHHHHHHHHhCCCcEEEeCCcchHhHH---HhhhcCcEEecCcccchhhcCCCC----
Q 046789 108 IFSALDGARILYLDGRLP--DTAIIVAQEAARKNIPILIDTERQRERID---EFLKLASYAVCSAKFPQVWTEAPS---- 178 (336)
Q Consensus 108 ~~~~l~~~~~i~~~~~~~--~~~~~~~~~a~~~~~~v~~d~~~~~~~~~---~~l~~~dil~~n~~e~~~l~~~~~---- 178 (336)
+.+.++.+|.+.+.+-+. +...++++...+...|+++|..... .+. ...+..-|+.++..|+..|++...
T Consensus 61 ~~~~~~~~~av~iGPGlg~~~~~~~~~~~~~~~~~p~VlDADaL~-~l~~~~~~~~~~~IlTPH~gE~~rL~~~~~~~~~ 139 (242)
T PF01256_consen 61 ILELLEKADAVVIGPGLGRDEETEELLEELLESDKPLVLDADALN-LLAENPKKRNAPVILTPHPGEFARLLGKSVEIQE 139 (242)
T ss_dssp HHHHHCH-SEEEE-TT-SSSHHHHHHHHHHHHHCSTEEEECHHHH-CHHHCCCCSSSCEEEE-BHHHHHHHHTTTCHHCC
T ss_pred hHhhhccCCEEEeecCCCCchhhHHHHHHHHhhcceEEEehHHHH-HHHhccccCCCCEEECCCHHHHHHHhCCcccchh
Confidence 345678999999987652 4445577777777889999994321 122 233455678899999999988654
Q ss_pred hHHHHHHHHHcCCCCcEEEEeecCCceEEEeeccCCCCchhhhhhhHHHHHHhhhcCCCCCCccccchhhhhhhccCccc
Q 046789 179 VPSALVSMLLRLPNLRFAIVTLGEDGCIMLERSVNESPELEEIDVDSLLEQLKQRKDDRAAVPTCISSLETRLRAEGIGT 258 (336)
Q Consensus 179 ~~~~~~~~l~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~g~~~ 258 (336)
.....++.+.+..+. +|+--|..- ++.+.++..
T Consensus 140 ~~~~~a~~~a~~~~~--~vvLKG~~t-~I~~p~~~~-------------------------------------------- 172 (242)
T PF01256_consen 140 DRIEAAREFAKEYGA--VVVLKGAVT-IIASPGGRV-------------------------------------------- 172 (242)
T ss_dssp SHHHHHHHHHHHHTS--EEEEESTSS-EEEEETSEE--------------------------------------------
T ss_pred hHHHHHHHHHhhcCc--EEEEeCCCc-EEEecCcce--------------------------------------------
Confidence 233444444443333 333334433 333322221
Q ss_pred ccceeeecccccCCCCCccccCCchhhhHHHHHHHHHhCCChhhHHHHHHHH
Q 046789 259 VSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYALCANMSPEKMLPFAAQV 310 (336)
Q Consensus 259 ~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l~~g~~l~~al~~a~~~ 310 (336)
|.-+ ....-.-+-|.||.+.|-+..-++++.++.+++..|...
T Consensus 173 -----~~n~----~gn~~la~gGsGDvLaGii~~llaq~~~~~~Aa~~av~l 215 (242)
T PF01256_consen 173 -----YVNP----TGNPGLATGGSGDVLAGIIAGLLAQGYDPFEAACLAVYL 215 (242)
T ss_dssp -----EEE--------GGGSSTTHHHHHHHHHHHHHHHTSSHHHHHHHHHHH
T ss_pred -----eEeC----CCCCCCCCCCcccHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 1111 122345678999999888888888999999998887654
No 86
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=96.31 E-value=0.076 Score=47.11 Aligned_cols=67 Identities=15% Similarity=0.064 Sum_probs=47.6
Q ss_pred hhhccCCcEEEEc-CCc----HHHHHHHHHHHHhCCCcEEEeCC------cchHhHHHhhhc--CcEEecCcccchhhcC
Q 046789 109 FSALDGARILYLD-GRL----PDTAIIVAQEAARKNIPILIDTE------RQRERIDEFLKL--ASYAVCSAKFPQVWTE 175 (336)
Q Consensus 109 ~~~l~~~~~i~~~-~~~----~~~~~~~~~~a~~~~~~v~~d~~------~~~~~~~~~l~~--~dil~~n~~e~~~l~~ 175 (336)
.+..+-++.+++. |.+ -+..+..++.+++.+.|+++||. ...+...++|++ .+++..|..|...+.+
T Consensus 50 ~e~~kia~AL~INIGTL~~~~~~~m~~A~~~An~~~~PvvLDPVgvgAt~~R~~~~~~LL~~~~~~~IrGN~sEI~~Lag 129 (265)
T COG2145 50 EEFAKIADALLINIGTLSAERIQAMRAAIKAANESGKPVVLDPVGVGATKFRTKFALELLAEVKPAAIRGNASEIAALAG 129 (265)
T ss_pred HHHHHhccceEEeeccCChHHHHHHHHHHHHHHhcCCCEEecCccCCchHHHHHHHHHHHHhcCCcEEeccHHHHHHHhc
Confidence 3445555656553 332 35666788899999999999993 244566778854 5899999999887764
No 87
>PF04587 ADP_PFK_GK: ADP-specific Phosphofructokinase/Glucokinase conserved region; InterPro: IPR007666 Although ATP is the most common phosphoryl group donor for kinases, certain hyperthermophilic archaea, such as Thermococcus litoralis and Pyrococcus furiosus, utilise unusual ADP-dependent glucokinases (ADPGKs) and phosphofructokinases (ADPPKKs) in their glycolytic pathways [, , ]. ADPGKs and ADPPFKs exhibit significant similarity, and form an ADP-dependent kinase (ADPK) family, which was tentatively named the PFKC family []. A ~460-residue ADPK domain is also found in a bifunctional ADP-dependent gluco/phosphofructo- kinase (ADP-GK/PFK) from Methanocaldococcus jannaschii (Methanococcus jannaschii) as well as in homologous hypothetical proteins present in several eukaryotes []. The whole structure of the ADPK domain can be divided into large and small alpha/beta subdomains. The larger subdomain, which carries the ADP binding site, consists of a twisted 12-stranded beta sheet flanked on both faces by 13 alpha helices and three 3(10) helices, forming an alpha/beta 3-layer sandwich. The smaller subdomain, which covers the active site, forms an alpha/beta two-layer structure containing 5 beta strands and four alpha helices. The ADP molecule is buried in a shallow pocket in the large subdomain. The binding of substrate sugar induces a structural change, the small domain closing to form a complete substrate sugar binding site [, , ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 1GC5_A 1L2L_A 3DRW_B 1U2X_A 1UA4_A.
Probab=95.91 E-value=0.11 Score=50.59 Aligned_cols=152 Identities=14% Similarity=0.119 Sum_probs=75.2
Q ss_pred ecCCchHHHHHHHHHcCCCce-EEEeecCChhhHHHHHHHHHcCCcccce--------EE----eCCCCccEEEEEEcCC
Q 046789 17 QGGGNAGNALTCAARLGLNPR-IISKIADDPQGKGIREEFEADGVDTSFL--------VV----SKEGNSPFTYVIVDNQ 83 (336)
Q Consensus 17 ~~GG~a~n~a~~l~~LG~~v~-~i~~vG~D~~g~~i~~~l~~~gv~~~~i--------~~----~~~~~t~~~~~~~~~~ 83 (336)
..||.|.-+|..|+.++...+ +.+.++. +.+.+.| ..++-+-.+ .. ..+...-..+++=-..
T Consensus 93 r~GGnA~imAn~la~l~~~~Vil~~p~~s----k~~~~l~-~~~i~~P~v~~~~~~l~~~~~a~~~~~~~~iH~IlEy~~ 167 (444)
T PF04587_consen 93 RMGGNAGIMANRLANLEGCPVILYAPILS----KEQAELF-NDNIYVPVVENGELKLIHPREAFKEDDEDDIHLILEYKK 167 (444)
T ss_dssp EEESHHHHHHHHHCCTT-SEEEEE-SS------HHHHTTS-SSSEEEEEEETTEEEEEEGGGS-STT----EEEEEEE-T
T ss_pred ccCchHHHHHHHHHhCCCCEEEEecCcCC----HHHHHhc-ccCcccccccCCcccccCchhccccCCccceEEEEEcCC
Confidence 499999999999998865544 4443543 3455555 222211100 00 0001122222221112
Q ss_pred C----------CeeEEEecCCCC-CCC-CcccchhhHhhhccCCcEEEEcCCcH---------------HHHHHHHHHHH
Q 046789 84 M----------KTRTCIHTPGDP-PMI-PDDLSESTIFSALDGARILYLDGRLP---------------DTAIIVAQEAA 136 (336)
Q Consensus 84 g----------~~~~~~~~~~~~-~~~-~e~~~~~~~~~~l~~~~~i~~~~~~~---------------~~~~~~~~~a~ 136 (336)
| .+|+.+.....+ .+. .+++. +.+.+.....|.++++|.-. +...+.++..+
T Consensus 168 G~~~~~~~aPraNRfI~s~D~~N~~l~~~e~f~-~~l~~~~~~~d~~vlSGlq~l~~~~~d~~~~~~~l~~~~~~i~~l~ 246 (444)
T PF04587_consen 168 GEKWGDITAPRANRFIVSSDPYNPRLSILEEFF-EALEEIAFKPDLAVLSGLQMLDEFYFDGETYEERLKRLKEQIKLLK 246 (444)
T ss_dssp TEEETTEE-SS-EEEEEEE-SSGGGTS--HHHH-HSHHHHHTT-SEEEEE-GGG--TB-TTSTCHHHHHHHHHHHHHHHH
T ss_pred CCeecceecCcCceEEEecCCCCccccchHHHH-HHHHhhccCCCEEEEeccccchhhccchhHHHHHHHHHHHHHHhcc
Confidence 2 255555432212 222 22222 23455566799999988621 12223344444
Q ss_pred -hCCCcEEEeCC-----c-chHhHHHhhhcCcEEecCcccchhhc
Q 046789 137 -RKNIPILIDTE-----R-QRERIDEFLKLASYAVCSAKFPQVWT 174 (336)
Q Consensus 137 -~~~~~v~~d~~-----~-~~~~~~~~l~~~dil~~n~~e~~~l~ 174 (336)
..+.+|-++.. . ....+..+++++|.+.+|++|+..++
T Consensus 247 ~~~~~~iH~E~As~~d~~l~~~i~~~ilp~vDSlGmNEqEL~~l~ 291 (444)
T PF04587_consen 247 SNPDIPIHLELASFADEELRKEILEKILPHVDSLGMNEQELANLL 291 (444)
T ss_dssp -HTT-EEEEE----SSHHHHHHHHHHHGGGSSEEEEEHHHHHHHH
T ss_pred CCCCCceEEEeccccCHHHHHHHHHHhhccccccccCHHHHHHHH
Confidence 68899999982 2 33445578899999999999998653
No 88
>PRK14038 ADP-dependent glucokinase; Provisional
Probab=94.67 E-value=0.6 Score=45.19 Aligned_cols=99 Identities=13% Similarity=0.033 Sum_probs=61.6
Q ss_pred HhhhccCCcEEEEcCCcH----------HHHHHHHHHHHhCCCcEEEeCC-----cchHhHHHhhhcCcEEecCcccchh
Q 046789 108 IFSALDGARILYLDGRLP----------DTAIIVAQEAARKNIPILIDTE-----RQRERIDEFLKLASYAVCSAKFPQV 172 (336)
Q Consensus 108 ~~~~l~~~~~i~~~~~~~----------~~~~~~~~~a~~~~~~v~~d~~-----~~~~~~~~~l~~~dil~~n~~e~~~ 172 (336)
+.+.....|.++++|.-. +.+.+.++..++.++++-++.. ..+..+..+++++|.+.+|+.|...
T Consensus 218 l~ei~~~~Dl~vlSG~q~l~~~~~~~~l~~~~~~l~~l~~~~i~iH~EfAs~~d~~~r~~i~~ilp~vDSlGmNE~ELa~ 297 (453)
T PRK14038 218 FEEIAKKAELAIISGLQALTEENYREPFETVREHLKVLNERGIPAHLEFAFTPDETVREEILGLLGKFYSVGLNEVELAS 297 (453)
T ss_pred HHhhccCCCEEEEEchhhhccccHHHHHHHHHHHHHhcCcCCceEEEEeeccchHHHHHHHHhhCccccccccCHHHHHH
Confidence 446667899999998731 2233444444556788888873 2334445688999999999999975
Q ss_pred hcC---C---------CC--hHH---HHHHHHHcCCCCcEEEEeecCCceEEE
Q 046789 173 WTE---A---------PS--VPS---ALVSMLLRLPNLRFAIVTLGEDGCIML 208 (336)
Q Consensus 173 l~~---~---------~~--~~~---~~~~~l~~~~~~~~vvvt~G~~G~~~~ 208 (336)
+.. . .+ ..+ ..+..+....|++.+.++. .+.+++
T Consensus 298 ll~~lg~~~l~~~i~~~~~~~~~~v~e~~~~L~~~~gleri~vHT--~~y~l~ 348 (453)
T PRK14038 298 IMEVMGEKTLAEKLLAKDPVDPIAVTEAMLKLAEKTGVKRIHFHT--YGYYLA 348 (453)
T ss_pred HHHHhccchhhhhhhhcCccCHHHHHHHHHHHHHHcCCCEEEEEe--cceeEE
Confidence 543 2 11 111 2333444545888887764 354444
No 89
>cd01938 ADPGK_ADPPFK ADP-dependent glucokinase (ADPGK) and phosphofructokinase (ADPPFK). ADPGK and ADPPFK are proteins that rely on ADP rather than ATP to donate a phosphoryl group. They are found in certain hyperthermophilic archaea and in higher eukaryotes. A functional ADPGK has been characterized in mouse and is assumed to be desirable during ischemia/hypoxia. ADPGK and ADPPFK contain a large and a small domain with the binding site located in a groove between the domains. Partial domain closing is seen when ADP is bound, and further domain closing is observed when glucose is also bound. The oligomerization state apparently varies depending on the species, with some existing as monomers, some as dimers, and some as tetramers.
Probab=91.65 E-value=0.88 Score=44.21 Aligned_cols=152 Identities=15% Similarity=0.088 Sum_probs=80.1
Q ss_pred eEEecCCchHHHHHHHHHcCC-CceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCC--------
Q 046789 14 IVVQGGGNAGNALTCAARLGL-NPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQM-------- 84 (336)
Q Consensus 14 ~~~~~GG~a~n~a~~l~~LG~-~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g-------- 84 (336)
.++..||.|..+|..++.+|. +|.+.+.+... ...+.+...++-.-.... .....-..+++=-..|
T Consensus 101 ~~~~mGGnAgimAn~la~~g~~~Vil~~p~~~k----~~~~L~~d~~i~~p~~e~-~~~~d~IHlIlEy~~G~~~~~~~a 175 (445)
T cd01938 101 DELRMGGNAGLMANRLAGEGDLKVLLGVPQSSK----LQAELFLDGPIVVPTFEN-LIEEDEIHLILEYPRGESWGDFVA 175 (445)
T ss_pred ceEEeCChHHHHHHHHHhcCCceEEEecCCCcH----HHHHhCCCCCeeeccccc-CCCCCccEEEEEcCCCCEecceEc
Confidence 348999999999999999998 77777775432 223333321221111100 0111222222212222
Q ss_pred --CeeEEEecCCCCCC-CCcccchhhHhhhccC-CcEEEEcCCc--------HHHHHHHHHHHH------hCCCcEEEeC
Q 046789 85 --KTRTCIHTPGDPPM-IPDDLSESTIFSALDG-ARILYLDGRL--------PDTAIIVAQEAA------RKNIPILIDT 146 (336)
Q Consensus 85 --~~~~~~~~~~~~~~-~~e~~~~~~~~~~l~~-~~~i~~~~~~--------~~~~~~~~~~a~------~~~~~v~~d~ 146 (336)
.+|+.++....+.+ ..+++ +.+..+. .|.++++|.- .....+.++.++ ...+++-++.
T Consensus 176 PraNRfI~~~d~~n~l~~~ee~----~~~i~~~~pDl~vlSGlqmm~~~~~~~~~~~~~l~~~~~~l~~l~~~i~iH~E~ 251 (445)
T cd01938 176 PRANRFIFHDDDNNPMLMREEF----FSSILEFQPDLAVLSGLQMMEGQSFDEGTRKELLERVKSILEILPPLIPIHLEL 251 (445)
T ss_pred CCCCeEEEecCCcchhhhhHHH----HHHHhhcCCCEEEEechhhhcccCCChhhHHHHHHHHHHHHHhccccCcEEEEe
Confidence 24444433221221 11111 2233444 8999998873 122333333322 2347787877
Q ss_pred C------cchHhHHHhhhcCcEEecCcccchhhc
Q 046789 147 E------RQRERIDEFLKLASYAVCSAKFPQVWT 174 (336)
Q Consensus 147 ~------~~~~~~~~~l~~~dil~~n~~e~~~l~ 174 (336)
. -....+..+++++|.+-+|+.|...+.
T Consensus 252 As~~d~~l~~~i~~~ilp~VDSlGmNEqEL~~l~ 285 (445)
T cd01938 252 ASTVDEELREEILHEVVPYVDSLGLNEQELANLL 285 (445)
T ss_pred cccccHHHHHHHHHHhcccccccccCHHHHHHHH
Confidence 2 123445578899999999999997554
No 90
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=90.36 E-value=3.9 Score=36.51 Aligned_cols=70 Identities=13% Similarity=0.144 Sum_probs=47.7
Q ss_pred hHhhhccCCcEEEEcCCc---H---HHHHHHHHHHHhCCCcEEEeCCcch---HhHHHhh-hcC-cEEecCcccchhhcC
Q 046789 107 TIFSALDGARILYLDGRL---P---DTAIIVAQEAARKNIPILIDTERQR---ERIDEFL-KLA-SYAVCSAKFPQVWTE 175 (336)
Q Consensus 107 ~~~~~l~~~~~i~~~~~~---~---~~~~~~~~~a~~~~~~v~~d~~~~~---~~~~~~l-~~~-dil~~n~~e~~~l~~ 175 (336)
.+.+.++.-..+++.+-+ | .....++++++.+++|+++|....+ +....++ .+. -|+.+|--|+..+++
T Consensus 94 ~i~k~L~RlhavVIGPGLGRdp~~~k~i~~iley~~~~dvP~VIDaDGL~Lv~q~~e~l~~~~~~viLTPNvvEFkRLcd 173 (306)
T KOG3974|consen 94 IIEKLLQRLHAVVIGPGLGRDPAILKEIAKILEYLRGKDVPLVIDADGLWLVEQLPERLIGGYPKVILTPNVVEFKRLCD 173 (306)
T ss_pred HHHHHHhheeEEEECCCCCCCHHHHHHHHHHHHHHhcCCCcEEEcCCceEehhhchhhhhccCceeeeCCcHHHHHHHHH
Confidence 344568888899997654 2 5666899999999999999993211 1111133 233 467799999988876
Q ss_pred C
Q 046789 176 A 176 (336)
Q Consensus 176 ~ 176 (336)
.
T Consensus 174 ~ 174 (306)
T KOG3974|consen 174 A 174 (306)
T ss_pred H
Confidence 5
No 91
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=88.59 E-value=4.4 Score=37.01 Aligned_cols=65 Identities=9% Similarity=0.077 Sum_probs=40.8
Q ss_pred hccCCcEEEEcCCc--HHHHHHHHHHHHhCC-CcEEEeCCcch--HhHHHhhhc-CcEEecCcccchhhcC
Q 046789 111 ALDGARILYLDGRL--PDTAIIVAQEAARKN-IPILIDTERQR--ERIDEFLKL-ASYAVCSAKFPQVWTE 175 (336)
Q Consensus 111 ~l~~~~~i~~~~~~--~~~~~~~~~~a~~~~-~~v~~d~~~~~--~~~~~~l~~-~dil~~n~~e~~~l~~ 175 (336)
..+.+|.+++.+-+ .+...++++..-+.. +|+++|..... ......+.. .-|+.+...|+..+++
T Consensus 98 ~~~~~~avviGpGlG~~~~~~~~~~~~l~~~~~p~ViDADaL~~la~~~~~~~~~~~VlTPH~gEf~rL~g 168 (284)
T COG0063 98 LVERADAVVIGPGLGRDAEGQEALKELLSSDLKPLVLDADALNLLAELPDLLDERKVVLTPHPGEFARLLG 168 (284)
T ss_pred hhccCCEEEECCCCCCCHHHHHHHHHHHhccCCCEEEeCcHHHHHHhCcccccCCcEEECCCHHHHHHhcC
Confidence 35778999998554 244455555555555 89999995321 111222222 2567799999999987
No 92
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=69.04 E-value=19 Score=34.49 Aligned_cols=52 Identities=13% Similarity=0.080 Sum_probs=31.5
Q ss_pred ceEEecCCchHHHHHHHHHcC--CCceEEEeecCChhhHHHHHHHHHcCCcccce
Q 046789 13 RIVVQGGGNAGNALTCAARLG--LNPRIISKIADDPQGKGIREEFEADGVDTSFL 65 (336)
Q Consensus 13 ~~~~~~GG~a~n~a~~l~~LG--~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i 65 (336)
.....+.|-+.-.+..++.+. ..+.....+=. ..=+.+...++++||+++++
T Consensus 80 ~~~afsSGmaAI~~~~l~ll~~GD~vl~~~~~YG-~t~~~~~~~l~~~gi~~~~~ 133 (396)
T COG0626 80 DAFAFSSGMAAISTALLALLKAGDHVLLPDDLYG-GTYRLFEKILQKFGVEVTFV 133 (396)
T ss_pred cEEEecCcHHHHHHHHHHhcCCCCEEEecCCccc-hHHHHHHHHHHhcCeEEEEE
Confidence 344677787777776666664 44433333211 12256777788899998876
No 93
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=68.03 E-value=32 Score=29.85 Aligned_cols=97 Identities=16% Similarity=0.168 Sum_probs=60.5
Q ss_pred CCCCCceEEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCee
Q 046789 8 PLPENRIVVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTR 87 (336)
Q Consensus 8 p~~~~~~~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~ 87 (336)
|.++.++-....|+|+++| .|++|..+|+-+=.+. ...+.-++.|+..|++-..+.. .+...+
T Consensus 70 ~~~g~~VLEIGtGsGY~aA-vla~l~~~V~siEr~~--~L~~~A~~~L~~lg~~nV~v~~-gDG~~G------------- 132 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAA-VLARLVGRVVSIERIE--ELAEQARRNLETLGYENVTVRH-GDGSKG------------- 132 (209)
T ss_pred CCCCCeEEEECCCchHHHH-HHHHHhCeEEEEEEcH--HHHHHHHHHHHHcCCCceEEEE-CCcccC-------------
Confidence 4566667788889999888 5577766666555543 4566677778888874321111 121111
Q ss_pred EEEecCCCCCCCCcccchhhHhhhccCCcEEEEcCCcHHHHHHHHHHHHhCCCcE
Q 046789 88 TCIHTPGDPPMIPDDLSESTIFSALDGARILYLDGRLPDTAIIVAQEAARKNIPI 142 (336)
Q Consensus 88 ~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~a~~~~~~v 142 (336)
++. -..+|.|++++..++.-..+++..+..|.-|
T Consensus 133 ---------------~~~------~aPyD~I~Vtaaa~~vP~~Ll~QL~~gGrlv 166 (209)
T COG2518 133 ---------------WPE------EAPYDRIIVTAAAPEVPEALLDQLKPGGRLV 166 (209)
T ss_pred ---------------CCC------CCCcCEEEEeeccCCCCHHHHHhcccCCEEE
Confidence 111 3466888888777766667777777777544
No 94
>KOG4184 consensus Predicted sugar kinase [Carbohydrate transport and metabolism; General function prediction only]
Probab=63.99 E-value=19 Score=33.71 Aligned_cols=150 Identities=12% Similarity=0.055 Sum_probs=77.1
Q ss_pred CceEEecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCC-------
Q 046789 12 NRIVVQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQM------- 84 (336)
Q Consensus 12 ~~~~~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g------- 84 (336)
+++.++.||.+.-+|.-+..-| .+.++|..+.-.....+=+. +++..-.+ ++... .++.-.+.|
T Consensus 136 ~R~~~~mGGNA~LMA~R~~~~~-~~~LlG~~~~R~~~~L~P~~-----~R~~~~~I-~~Ddi--HlILEYK~Gd~~G~~V 206 (478)
T KOG4184|consen 136 ERINWYMGGNAPLMAVRFFMEG-AQVLLGAHMSRKLRPLLPKE-----IRLAGDEI-PNDDI--HLILEYKAGDKWGPYV 206 (478)
T ss_pred hhhhhhccCCchHHHHHHHhcc-ceeeecccccchhccccchh-----hhcccCcC-cCCce--EEEEEeccCCcccccc
Confidence 3455999999999998877776 78899988763322222122 22222222 12112 122222222
Q ss_pred ---CeeEEEecCCCCCCCCcccchhhHhhhccCC--cEEEEcCCcH------HHHH----HHHHHHH--hCCCcEEEeCC
Q 046789 85 ---KTRTCIHTPGDPPMIPDDLSESTIFSALDGA--RILYLDGRLP------DTAI----IVAQEAA--RKNIPILIDTE 147 (336)
Q Consensus 85 ---~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~--~~i~~~~~~~------~~~~----~~~~~a~--~~~~~v~~d~~ 147 (336)
..|+..+.. ..++...-.+.+.+.++.+ |+++++|.-. +... ++.+... ..++|+=+++.
T Consensus 207 AP~anR~I~~~D---~~n~~m~~~E~f~~Al~~fqPdLvVvsGlhmme~qske~r~~rl~~V~r~L~~iP~gip~HlEla 283 (478)
T KOG4184|consen 207 APRANRYILHND---RNNPHMRAVEQFTDALKMFQPDLVVVSGLHMMEMQSKEEREARLQQVVRSLSDIPTGIPVHLELA 283 (478)
T ss_pred cccccceeeecC---CCChHHHHHHHHHHHHHHhCCCEEEEechhHHhhhhHHHHHHHHHHHHHHHhcCCCCCchhhhHh
Confidence 123333221 1122211124455666554 8999988621 2111 1111111 14566666662
Q ss_pred c------chHhHHHhhhcCcEEecCcccchhh
Q 046789 148 R------QRERIDEFLKLASYAVCSAKFPQVW 173 (336)
Q Consensus 148 ~------~~~~~~~~l~~~dil~~n~~e~~~l 173 (336)
. ..+.+-.+|+++|-+-+|+.|...|
T Consensus 284 S~~~~~l~~~i~h~VlPyVdSLGlNEQEL~fL 315 (478)
T KOG4184|consen 284 SMTNRELMSSIVHQVLPYVDSLGLNEQELLFL 315 (478)
T ss_pred HHHHHHHHHHHHHHhhhhccccCCCHHHHHHH
Confidence 1 2234456789999999999998644
No 95
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=59.67 E-value=1.2e+02 Score=26.48 Aligned_cols=36 Identities=8% Similarity=0.078 Sum_probs=25.9
Q ss_pred hhhccCCcEEEEcCCcHHHHHHHHHHHHhCCCcEEE
Q 046789 109 FSALDGARILYLDGRLPDTAIIVAQEAARKNIPILI 144 (336)
Q Consensus 109 ~~~l~~~~~i~~~~~~~~~~~~~~~~a~~~~~~v~~ 144 (336)
.+.++++|+++.+...++....+-+.++++++|++.
T Consensus 106 ~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~ 141 (228)
T cd00757 106 EELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVS 141 (228)
T ss_pred HHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEE
Confidence 355778999888777676656666777888887653
No 96
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=53.24 E-value=1.1e+02 Score=24.20 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=27.7
Q ss_pred hhccCCcEEEEcCCcHHHHHHHHHHHHhCCCcEEE
Q 046789 110 SALDGARILYLDGRLPDTAIIVAQEAARKNIPILI 144 (336)
Q Consensus 110 ~~l~~~~~i~~~~~~~~~~~~~~~~a~~~~~~v~~ 144 (336)
+.++.+|+++.+.........+.+.+++.++|++.
T Consensus 85 ~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~ 119 (143)
T cd01483 85 DFLDGVDLVIDAIDNIAVRRALNRACKELGIPVID 119 (143)
T ss_pred HHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence 55788999998877777777788888998888653
No 97
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=52.54 E-value=30 Score=33.21 Aligned_cols=38 Identities=21% Similarity=0.149 Sum_probs=24.3
Q ss_pred HHHHHHHHhCCCcEEEeCCcchHhHHHhhhc-CcEEecC
Q 046789 129 IIVAQEAARKNIPILIDTERQRERIDEFLKL-ASYAVCS 166 (336)
Q Consensus 129 ~~~~~~a~~~~~~v~~d~~~~~~~~~~~l~~-~dil~~n 166 (336)
..+.+.|+++++++++|---......+-|++ +||+.-+
T Consensus 182 ~~l~~la~~~g~~vvVDnTf~~p~~~~pL~lGADIV~hS 220 (409)
T KOG0053|consen 182 EKLARLAHKYGFLVVVDNTFGSPYNQDPLPLGADIVVHS 220 (409)
T ss_pred HHHHHHHhhCCCEEEEeCCcCcccccChhhcCCCEEEEe
Confidence 3577778888888888873222334455565 7776533
No 98
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=51.14 E-value=43 Score=31.82 Aligned_cols=109 Identities=19% Similarity=0.218 Sum_probs=61.6
Q ss_pred HHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCeeEEEec-CCCCCCCCcccch
Q 046789 27 TCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHT-PGDPPMIPDDLSE 105 (336)
Q Consensus 27 ~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~~~~~-~~~~~~~~e~~~~ 105 (336)
..+++-|..+.--+.+=...+ ..+...|++.||+++++..++ +-.+. .-+++ +.+.++.. -+++.+..-|++
T Consensus 95 ~~la~aGD~iVss~~LYGGT~-~lf~~tl~~~Gi~v~fvd~~d--~~~~~-~aI~~--nTkavf~EtigNP~~~v~Die- 167 (426)
T COG2873 95 LNLAGAGDNIVSSSKLYGGTY-NLFSHTLKRLGIEVRFVDPDD--PENFE-AAIDE--NTKAVFAETIGNPGLDVLDIE- 167 (426)
T ss_pred HHhccCCCeeEeeccccCchH-HHHHHHHHhcCcEEEEeCCCC--HHHHH-HHhCc--ccceEEEEeccCCCccccCHH-
Confidence 344455777766666544344 466777899999998874321 11111 11222 23333322 232344444444
Q ss_pred hhHhhhccCCcEEEEcCCcHHHHHHHHHHHHhCCCcEEEeCCc-chHhHHHhhhcCcEEecC
Q 046789 106 STIFSALDGARILYLDGRLPDTAIIVAQEAARKNIPILIDTER-QRERIDEFLKLASYAVCS 166 (336)
Q Consensus 106 ~~~~~~l~~~~~i~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~-~~~~~~~~l~~~dil~~n 166 (336)
.+.+.|+++++|+++|--- ..-.++.+-.-+||++=+
T Consensus 168 ------------------------~ia~iAh~~gvpliVDNT~atpyl~rP~~hGADIVvHS 205 (426)
T COG2873 168 ------------------------AIAEIAHRHGVPLIVDNTFATPYLCRPIEHGADIVVHS 205 (426)
T ss_pred ------------------------HHHHHHHHcCCcEEEecCCCcceecchhhcCCCEEEEe
Confidence 4788899999999999731 113445555778888644
No 99
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=49.90 E-value=1.8e+02 Score=25.66 Aligned_cols=38 Identities=5% Similarity=0.055 Sum_probs=28.6
Q ss_pred HhhhccCCcEEEEcCCcHHHHHHHHHHHHhCCCcEEEe
Q 046789 108 IFSALDGARILYLDGRLPDTAIIVAQEAARKNIPILID 145 (336)
Q Consensus 108 ~~~~l~~~~~i~~~~~~~~~~~~~~~~a~~~~~~v~~d 145 (336)
..+.++++|+++.+...++....+-+.+++.++|++.-
T Consensus 108 ~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~ 145 (240)
T TIGR02355 108 LAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSG 145 (240)
T ss_pred HHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 34567889998887777776666777888899988754
No 100
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=49.87 E-value=80 Score=30.75 Aligned_cols=39 Identities=15% Similarity=0.150 Sum_probs=25.7
Q ss_pred HHHHHHHHHhCCCcEEEeCCcchHhHHHhh-hcCcEEecC
Q 046789 128 AIIVAQEAARKNIPILIDTERQRERIDEFL-KLASYAVCS 166 (336)
Q Consensus 128 ~~~~~~~a~~~~~~v~~d~~~~~~~~~~~l-~~~dil~~n 166 (336)
+.++.+.|+++++++++|---..+.+...+ ..+||+.-+
T Consensus 166 i~~I~~iA~~~gi~livD~T~~tP~~~~pl~~GADIvv~S 205 (432)
T PRK06702 166 FKEFSDAAKELEVPFIVDNTLATPYLCQAFEHGANIIVHS 205 (432)
T ss_pred HHHHHHHHHHcCCEEEEECCCCchhhCChhhcCCCEEEEc
Confidence 457888899999999999843333333334 446766544
No 101
>COG4809 Archaeal ADP-dependent phosphofructokinase/glucokinase [Carbohydrate transport and metabolism]
Probab=49.79 E-value=1.1e+02 Score=29.17 Aligned_cols=68 Identities=7% Similarity=-0.022 Sum_probs=45.0
Q ss_pred HhhhccCCcEEEEcCCcH---------------HHHHHHHHHHHh-CCCcEEEeCC------cchHhHHHhhhcCcEEec
Q 046789 108 IFSALDGARILYLDGRLP---------------DTAIIVAQEAAR-KNIPILIDTE------RQRERIDEFLKLASYAVC 165 (336)
Q Consensus 108 ~~~~l~~~~~i~~~~~~~---------------~~~~~~~~~a~~-~~~~v~~d~~------~~~~~~~~~l~~~dil~~ 165 (336)
+.++....|..+++|+-+ +...+-++..++ .++++=++.. -....+..+++.++-+-+
T Consensus 219 l~~i~~~vDgaiiSGyq~l~eey~dg~t~~~yle~s~e~i~~lk~~~~irvHlEfas~~d~~irk~i~~~il~~v~SvGl 298 (466)
T COG4809 219 LDEIAKEVDGAIISGYQGLKEEYSDGSTYKYYLERSREDIKALKDRENIRVHLEFASIQDRKIRKEILTNILSIVYSVGL 298 (466)
T ss_pred HHHHhhhcceeeeechhhhhhhcCCCCcHHHHHHHHHHHHHHHhccccceEEEEecccccHHHHHHHHHHHHhhhhhcCC
Confidence 556677899999998732 222334444444 6777777762 133455668899999999
Q ss_pred CcccchhhcC
Q 046789 166 SAKFPQVWTE 175 (336)
Q Consensus 166 n~~e~~~l~~ 175 (336)
|+.|...+..
T Consensus 299 dE~ElA~vl~ 308 (466)
T COG4809 299 DEVELANVLN 308 (466)
T ss_pred CHHHHHHHHH
Confidence 9998875543
No 102
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=49.04 E-value=85 Score=23.29 Aligned_cols=49 Identities=20% Similarity=0.251 Sum_probs=34.2
Q ss_pred hhhccCCcEEEE--cCCcHHHHHHHHHHHHhCCCcEEEeCCcchHhHHHhh
Q 046789 109 FSALDGARILYL--DGRLPDTAIIVAQEAARKNIPILIDTERQRERIDEFL 157 (336)
Q Consensus 109 ~~~l~~~~~i~~--~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~l 157 (336)
...++.+|++++ +.........+-+.|++.++|+++--......+...+
T Consensus 43 ~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~~l~~~l 93 (97)
T PF10087_consen 43 PSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVSSLERAL 93 (97)
T ss_pred HHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHHHHHHHH
Confidence 456889998865 4445678888889999999998876643334444433
No 103
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=48.94 E-value=97 Score=25.80 Aligned_cols=71 Identities=10% Similarity=0.045 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhCCCcEEEeCC------cchHhHHHhhhcCcEEecCcccchhhcCCCChHHHHHHHHHcCCCCcEEEEe
Q 046789 126 DTAIIVAQEAARKNIPILIDTE------RQRERIDEFLKLASYAVCSAKFPQVWTEAPSVPSALVSMLLRLPNLRFAIVT 199 (336)
Q Consensus 126 ~~~~~~~~~a~~~~~~v~~d~~------~~~~~~~~~l~~~dil~~n~~e~~~l~~~~~~~~~~~~~l~~~~~~~~vvvt 199 (336)
+....+++.+.+.+.++++=-. .....+....+..+++-...-.. .+...+.+...+... +++.|++-
T Consensus 35 dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f-----~~~~~~~i~~~I~~~-~pdiv~vg 108 (172)
T PF03808_consen 35 DLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYF-----DEEEEEAIINRINAS-GPDIVFVG 108 (172)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCC-----ChhhHHHHHHHHHHc-CCCEEEEE
Confidence 4555677777777666554331 12223344444555553332211 222334445555443 67777776
Q ss_pred ecC
Q 046789 200 LGE 202 (336)
Q Consensus 200 ~G~ 202 (336)
+|.
T Consensus 109 lG~ 111 (172)
T PF03808_consen 109 LGA 111 (172)
T ss_pred CCC
Confidence 653
No 104
>PHA00438 hypothetical protein
Probab=44.93 E-value=17 Score=25.96 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=16.6
Q ss_pred ccccCCchhhhHHHHHHHHH
Q 046789 276 LVDTTGAGDAFIGAVLYALC 295 (336)
Q Consensus 276 vvd~tGAGDaF~ag~i~~l~ 295 (336)
...-.|..++|.+||++|+-
T Consensus 43 ~lR~~G~SE~~IaGfl~Gl~ 62 (81)
T PHA00438 43 LLRQAGYSEAFIAGFLAGLQ 62 (81)
T ss_pred HHHHcCCcHHHHHHHHHHHH
Confidence 33458999999999999984
No 105
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=43.56 E-value=66 Score=28.41 Aligned_cols=60 Identities=12% Similarity=0.158 Sum_probs=41.5
Q ss_pred ccCCcEEEEcCCcH---HHHHHHHHHHH-hCCCcEEEeCCcchHhHHHhhhcCcEEe----cCcccchhhcC
Q 046789 112 LDGARILYLDGRLP---DTAIIVAQEAA-RKNIPILIDTERQRERIDEFLKLASYAV----CSAKFPQVWTE 175 (336)
Q Consensus 112 l~~~~~i~~~~~~~---~~~~~~~~~a~-~~~~~v~~d~~~~~~~~~~~l~~~dil~----~n~~e~~~l~~ 175 (336)
-.++|.+.+.|... +...++++..+ +.++|+++.|... ..+.+++|.++ +|......+.+
T Consensus 39 ~~GTDaImIGGS~gvt~~~~~~~v~~ik~~~~lPvilfP~~~----~~is~~aDavff~svLNS~n~~~i~g 106 (240)
T COG1646 39 EAGTDAIMIGGSDGVTEENVDNVVEAIKERTDLPVILFPGSP----SGISPYADAVFFPSVLNSDNPYWIVG 106 (240)
T ss_pred HcCCCEEEECCcccccHHHHHHHHHHHHhhcCCCEEEecCCh----hccCccCCeEEEEEEecCCCcccccc
Confidence 36789999988863 56778888888 8899999999643 33445666443 56555554444
No 106
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=42.81 E-value=92 Score=27.10 Aligned_cols=64 Identities=14% Similarity=0.058 Sum_probs=46.8
Q ss_pred CCcEEEEcCCc----HHHHHHHHHHHHhCCCcEEEeCCc--chHhHHHhhhcCcEEecCcc-----cchhhcCCC
Q 046789 114 GARILYLDGRL----PDTAIIVAQEAARKNIPILIDTER--QRERIDEFLKLASYAVCSAK-----FPQVWTEAP 177 (336)
Q Consensus 114 ~~~~i~~~~~~----~~~~~~~~~~a~~~~~~v~~d~~~--~~~~~~~~l~~~dil~~n~~-----e~~~l~~~~ 177 (336)
....+.++|.- ++.+.++++.+++.|+.+.+|.+. ..+.+..+++++|.+.++.. .-..++|..
T Consensus 38 sggGVt~SGGEPllq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~ 112 (213)
T PRK10076 38 SGGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMN 112 (213)
T ss_pred CCCEEEEeCchHHcCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCC
Confidence 44678888764 467789999999999999999953 44677788889988766533 334666643
No 107
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=42.80 E-value=1.4e+02 Score=25.07 Aligned_cols=69 Identities=17% Similarity=0.220 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhCCCcEEEeCC------cchHhHHHhhhcCcEEecCcccchhhcCCCChHHHHHHHHHcCCCCcEEEEe
Q 046789 126 DTAIIVAQEAARKNIPILIDTE------RQRERIDEFLKLASYAVCSAKFPQVWTEAPSVPSALVSMLLRLPNLRFAIVT 199 (336)
Q Consensus 126 ~~~~~~~~~a~~~~~~v~~d~~------~~~~~~~~~l~~~dil~~n~~e~~~l~~~~~~~~~~~~~l~~~~~~~~vvvt 199 (336)
+....+++.+.+++.++++=-. ...+.+..-.+..+++-.+... . +...+.+.+.+... +.+.++|-
T Consensus 35 dl~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f-----~-~~~~~~i~~~I~~s-~~dil~Vg 107 (177)
T TIGR00696 35 DLMEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPL-----E-PEERKAALAKIARS-GAGIVFVG 107 (177)
T ss_pred HHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCC-----C-hHHHHHHHHHHHHc-CCCEEEEE
Confidence 4555777777777766554331 1223333334455555432111 1 11223445555553 67777776
Q ss_pred ec
Q 046789 200 LG 201 (336)
Q Consensus 200 ~G 201 (336)
+|
T Consensus 108 lG 109 (177)
T TIGR00696 108 LG 109 (177)
T ss_pred cC
Confidence 65
No 108
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=42.05 E-value=1.9e+02 Score=26.14 Aligned_cols=34 Identities=12% Similarity=0.079 Sum_probs=25.2
Q ss_pred cCCcEEEEcCCcHHHHHHHHHHHHhCCCcEEEeC
Q 046789 113 DGARILYLDGRLPDTAIIVAQEAARKNIPILIDT 146 (336)
Q Consensus 113 ~~~~~i~~~~~~~~~~~~~~~~a~~~~~~v~~d~ 146 (336)
.++|+++.+-.....-..+.+.++++++|++.-.
T Consensus 120 ~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~g 153 (268)
T PRK15116 120 AGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTG 153 (268)
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 4689887765555666678889999999987544
No 109
>PF10911 DUF2717: Protein of unknown function (DUF2717); InterPro: IPR020121 The proteins in this entry are uncharacterised.
Probab=41.34 E-value=20 Score=25.51 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=15.7
Q ss_pred ccCCchhhhHHHHHHHHH
Q 046789 278 DTTGAGDAFIGAVLYALC 295 (336)
Q Consensus 278 d~tGAGDaF~ag~i~~l~ 295 (336)
...|+.|+|++||+.|+.
T Consensus 45 r~~G~SE~~I~Gfl~Gl~ 62 (77)
T PF10911_consen 45 RKQGWSESYILGFLAGLQ 62 (77)
T ss_pred HHccccHHHHHHHHHHHH
Confidence 456999999999999984
No 110
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=37.20 E-value=1.5e+02 Score=20.81 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=32.6
Q ss_pred chHHHHHHHHHcCCCceEEEeecC------ChhhHHHHHHHHHcCCcccc
Q 046789 21 NAGNALTCAARLGLNPRIISKIAD------DPQGKGIREEFEADGVDTSF 64 (336)
Q Consensus 21 ~a~n~a~~l~~LG~~v~~i~~vG~------D~~g~~i~~~l~~~gv~~~~ 64 (336)
.|.=.|..++.+|.+++++..-.. ....+.+.+.|++.||++..
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 355678888999999999876332 23477788899999887654
No 111
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=36.42 E-value=2.9e+02 Score=24.13 Aligned_cols=56 Identities=20% Similarity=0.116 Sum_probs=39.5
Q ss_pred ccCCcEEEEcCCcHH-HHHHHHHHHHhCCCcEEEeCC--cchHhHHHhhh--cCcEEecCc
Q 046789 112 LDGARILYLDGRLPD-TAIIVAQEAARKNIPILIDTE--RQRERIDEFLK--LASYAVCSA 167 (336)
Q Consensus 112 l~~~~~i~~~~~~~~-~~~~~~~~a~~~~~~v~~d~~--~~~~~~~~~l~--~~dil~~n~ 167 (336)
-.++||+.+.+..+. +....++.|++.++.+.+|+- ..++....+++ .+|++..-.
T Consensus 78 ~aGAd~~tV~g~A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~H~ 138 (217)
T COG0269 78 EAGADWVTVLGAADDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVILHR 138 (217)
T ss_pred HcCCCEEEEEecCCHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEEEe
Confidence 378899999888774 555889999999999999993 22233344443 667666443
No 112
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=35.56 E-value=46 Score=26.21 Aligned_cols=43 Identities=16% Similarity=0.194 Sum_probs=36.0
Q ss_pred ecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccc
Q 046789 17 QGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSF 64 (336)
Q Consensus 17 ~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~ 64 (336)
...|.|.-++..|...|+++.+++.+|... .+.|++.||++-.
T Consensus 49 ~~~g~G~~~a~~l~~~gvdvvi~~~iG~~a-----~~~l~~~GIkv~~ 91 (121)
T COG1433 49 AEKGAGIRIAELLVDEGVDVVIASNIGPNA-----YNALKAAGIKVYV 91 (121)
T ss_pred ccCcchHHHHHHHHHcCCCEEEECccCHHH-----HHHHHHcCcEEEe
Confidence 457888889999999999999999988754 5799999998653
No 113
>PRK13018 cell division protein FtsZ; Provisional
Probab=35.07 E-value=2.3e+02 Score=27.07 Aligned_cols=130 Identities=18% Similarity=0.308 Sum_probs=70.1
Q ss_pred EecCCchHHHHHHHHHcCCC-ceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCeeEEEecCC
Q 046789 16 VQGGGNAGNALTCAARLGLN-PRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHTPG 94 (336)
Q Consensus 16 ~~~GG~a~n~a~~l~~LG~~-v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~~~~~~~ 94 (336)
.-.||+|.|+.-.+.+.|.. +.++. +-.|. +.|.....+.. +.+ ....| ...| ..+
T Consensus 34 iGvGGaG~N~v~~m~~~~~~~v~~ia-iNTD~------q~L~~~~a~~k-i~i-G~~~t-------~G~G-------aG~ 90 (378)
T PRK13018 34 VGCGGAGNNTINRLYEIGIEGAETIA-INTDA------QHLAMIKADKK-ILI-GKSLT-------RGLG-------AGG 90 (378)
T ss_pred EEeCCcHHHHHHHHHHcCCCCceEEE-EECCH------HHHhcCCCCcE-Eec-CCccC-------CCCC-------CCC
Confidence 67899999999999999865 55544 55664 45665554432 222 11111 0000 000
Q ss_pred CCCCCCcccch--hhHhhhccCCcEEEEcCCc-----HHHHHHHHHHHHhCCCcE---EEeCCc---------chHhHHH
Q 046789 95 DPPMIPDDLSE--STIFSALDGARILYLDGRL-----PDTAIIVAQEAARKNIPI---LIDTER---------QRERIDE 155 (336)
Q Consensus 95 ~~~~~~e~~~~--~~~~~~l~~~~~i~~~~~~-----~~~~~~~~~~a~~~~~~v---~~d~~~---------~~~~~~~ 155 (336)
++..-.+..++ +.+.+.++++|.|.+...+ .....-+++.+++.+.++ +.-|-. ....+..
T Consensus 91 dp~~G~~aaee~~d~I~~~le~~D~vfI~aGLGGGTGSGaapvIa~iake~g~ltv~vVt~Pf~~EG~~r~~nA~~gL~~ 170 (378)
T PRK13018 91 DPEVGRKAAEESRDEIKEVLKGADLVFVTAGMGGGTGTGAAPVVAEIAKEQGALVVGVVTKPFKFEGRARMQKAEEGIER 170 (378)
T ss_pred ChHHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCcchhhHHHHHHHHHHHcCCCeEEEEEcCcccccHhHHHHHHHHHHH
Confidence 11111111111 3467788999998874332 234444556667766543 233311 2257778
Q ss_pred hhhcCcEEecCcc
Q 046789 156 FLKLASYAVCSAK 168 (336)
Q Consensus 156 ~l~~~dil~~n~~ 168 (336)
+.+++|.+++-.+
T Consensus 171 L~e~~D~vividN 183 (378)
T PRK13018 171 LREAADTVIVIDN 183 (378)
T ss_pred HHHhCCEEEEEec
Confidence 8888997664333
No 114
>PRK08114 cystathionine beta-lyase; Provisional
Probab=35.04 E-value=1.3e+02 Score=29.00 Aligned_cols=50 Identities=18% Similarity=0.154 Sum_probs=25.8
Q ss_pred EecCCchHHHHHHHHHcCC-CceEEEeecCChhhHHHHHHHHHcCCcccce
Q 046789 16 VQGGGNAGNALTCAARLGL-NPRIISKIADDPQGKGIREEFEADGVDTSFL 65 (336)
Q Consensus 16 ~~~GG~a~n~a~~l~~LG~-~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i 65 (336)
....|.+...+..++.|.. +..+++.-.-...-..+.+.+++.||++.++
T Consensus 82 ~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~v 132 (395)
T PRK08114 82 LYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWF 132 (395)
T ss_pred EEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEE
Confidence 4556666666655555542 2233332111112234446678888877664
No 115
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=34.27 E-value=3.4e+02 Score=24.27 Aligned_cols=62 Identities=11% Similarity=0.031 Sum_probs=45.4
Q ss_pred hhccCCcEEEEcCCc--HHHHHHHHHHHHhCCCcEEEeCCcchHhHHHhhhcCcEEecCcccch
Q 046789 110 SALDGARILYLDGRL--PDTAIIVAQEAARKNIPILIDTERQRERIDEFLKLASYAVCSAKFPQ 171 (336)
Q Consensus 110 ~~l~~~~~i~~~~~~--~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~l~~~dil~~n~~e~~ 171 (336)
..-.++|++++.... ++.+.++++.+++.|..+++|+....+.....-..+|++.+|.....
T Consensus 129 a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~gadiIgin~rdl~ 192 (260)
T PRK00278 129 ARAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALKLGAPLIGINNRNLK 192 (260)
T ss_pred HHHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEECCCCcc
Confidence 345788999987765 45777899999999999999996544333333347899998865443
No 116
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=33.57 E-value=1.4e+02 Score=26.37 Aligned_cols=83 Identities=10% Similarity=0.113 Sum_probs=49.2
Q ss_pred CCeeEEEecCCCCCCCCcccchhhHhhhccCCcEEEEcCCc---HHHHHHHHHHHHhCCCcEEEeCCcchHhHHHhhhcC
Q 046789 84 MKTRTCIHTPGDPPMIPDDLSESTIFSALDGARILYLDGRL---PDTAIIVAQEAARKNIPILIDTERQRERIDEFLKLA 160 (336)
Q Consensus 84 g~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~i~~~~~~---~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~l~~~ 160 (336)
+..+.+..+|. .....+.+. .-.-..+|.+.+.|.. .+.+.++++..++..+|+++.|... ..+-+.+
T Consensus 7 ~~~h~~liDP~-k~~~~~~~~----~~~~~gtdai~vGGS~~vt~~~~~~~v~~ik~~~lPvilfp~~~----~~i~~~a 77 (232)
T PRK04169 7 GWLHVTLLDPD-KPLPDEALE----AICESGTDAIIVGGSDGVTEENVDELVKAIKEYDLPVILFPGNI----EGISPGA 77 (232)
T ss_pred CceEEEEECCC-CCCCHHHHH----HHHhcCCCEEEEcCCCccchHHHHHHHHHHhcCCCCEEEeCCCc----cccCcCC
Confidence 34455555554 233333231 2334778999998876 4667788888888889999988532 3344556
Q ss_pred cEEe----cCcccchhhcC
Q 046789 161 SYAV----CSAKFPQVWTE 175 (336)
Q Consensus 161 dil~----~n~~e~~~l~~ 175 (336)
|.+. +|......+.+
T Consensus 78 Da~l~~svlNs~~~~~iig 96 (232)
T PRK04169 78 DAYLFPSVLNSRNPYWIIG 96 (232)
T ss_pred CEEEEEEEecCCCcchHhh
Confidence 6432 44444443433
No 117
>PRK05967 cystathionine beta-lyase; Provisional
Probab=33.33 E-value=1e+02 Score=29.55 Aligned_cols=33 Identities=12% Similarity=0.246 Sum_probs=23.5
Q ss_pred CCcEEEEcC-Cc----HHHHHHHHHHHHhCCCcEEEeC
Q 046789 114 GARILYLDG-RL----PDTAIIVAQEAARKNIPILIDT 146 (336)
Q Consensus 114 ~~~~i~~~~-~~----~~~~~~~~~~a~~~~~~v~~d~ 146 (336)
+.++++++. .. ...+.++.+.|+++++.+++|-
T Consensus 149 ~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~ 186 (395)
T PRK05967 149 NTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDN 186 (395)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEEC
Confidence 466777753 22 2455678888999999999997
No 118
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=32.65 E-value=3.3e+02 Score=23.95 Aligned_cols=34 Identities=6% Similarity=0.101 Sum_probs=26.4
Q ss_pred cCCcEEEEcCCcHHHHHHHHHHHHhCCCcEEEeC
Q 046789 113 DGARILYLDGRLPDTAIIVAQEAARKNIPILIDT 146 (336)
Q Consensus 113 ~~~~~i~~~~~~~~~~~~~~~~a~~~~~~v~~d~ 146 (336)
.++|+++.+-.....-..+.+.|+++++|++.-.
T Consensus 101 ~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~ 134 (231)
T cd00755 101 GDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSM 134 (231)
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 4689888776666666778899999999987655
No 119
>PF11469 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR021568 This archaeal family of proteins has no known function. ; PDB: 1ZTD_A.
Probab=32.64 E-value=60 Score=24.73 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=25.2
Q ss_pred cccCCchhhhHHHHHHHHHhC-CChhhHHHH
Q 046789 277 VDTTGAGDAFIGAVLYALCAN-MSPEKMLPF 306 (336)
Q Consensus 277 vd~tGAGDaF~ag~i~~l~~g-~~l~~al~~ 306 (336)
.|-.|-||..=|-+.|+|++| .+.+|++..
T Consensus 53 ~dkh~kGd~aEA~iAyAWLeg~it~eEavei 83 (120)
T PF11469_consen 53 TDKHGKGDIAEALIAYAWLEGKITIEEAVEI 83 (120)
T ss_dssp GGCCGHHHHHHHHHHHHHHTTSS-HHHHHHH
T ss_pred ccccCccHHHHHHHHHHHHhccccHHHHHHH
Confidence 489999999999999999998 577887654
No 120
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=32.36 E-value=3.6e+02 Score=23.88 Aligned_cols=36 Identities=8% Similarity=0.030 Sum_probs=26.3
Q ss_pred hhhccCCcEEEEcCCcHHHHHHHHHHHHhCCCcEEE
Q 046789 109 FSALDGARILYLDGRLPDTAIIVAQEAARKNIPILI 144 (336)
Q Consensus 109 ~~~l~~~~~i~~~~~~~~~~~~~~~~a~~~~~~v~~ 144 (336)
.+.++++|+++.+...++....+-+.++++++|++.
T Consensus 117 ~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~ 152 (245)
T PRK05690 117 AALIAGHDLVLDCTDNVATRNQLNRACFAAKKPLVS 152 (245)
T ss_pred HHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEEEE
Confidence 456788999888776666655566777888888764
No 121
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=31.70 E-value=1e+02 Score=26.96 Aligned_cols=58 Identities=12% Similarity=0.205 Sum_probs=42.8
Q ss_pred cCCcEEEEcCCcHHHHHHHHHHHHhCCCc--EEEeCCcchHhHHHhhhcCcEEe---cCcccc
Q 046789 113 DGARILYLDGRLPDTAIIVAQEAARKNIP--ILIDTERQRERIDEFLKLASYAV---CSAKFP 170 (336)
Q Consensus 113 ~~~~~i~~~~~~~~~~~~~~~~a~~~~~~--v~~d~~~~~~~~~~~l~~~dil~---~n~~e~ 170 (336)
.++|++.+.........+++++.++.|++ ++++|....+.+..+++.+|++. +|-...
T Consensus 83 agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGfg 145 (220)
T COG0036 83 AGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGFG 145 (220)
T ss_pred hCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECCCCc
Confidence 45788888776656667788888888876 57888777788888898888654 554433
No 122
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=31.27 E-value=82 Score=23.15 Aligned_cols=39 Identities=21% Similarity=0.270 Sum_probs=32.3
Q ss_pred CchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCccc
Q 046789 20 GNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTS 63 (336)
Q Consensus 20 G~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~ 63 (336)
|.+...+..+...|.++.+.+.+|... +..|++.||.+-
T Consensus 48 ~~~~~~~~~l~~~~v~~vi~~~iG~~a-----~~~l~~~gI~v~ 86 (102)
T cd00562 48 GEGKLAARLLALEGCDAVLVGGIGGPA-----AAKLEAAGIKPI 86 (102)
T ss_pred ccchHHHHHHHHCCCcEEEEcccCccH-----HHHHHHcCCEEE
Confidence 667888999999999999999988754 468888899864
No 123
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=30.75 E-value=61 Score=31.04 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=34.3
Q ss_pred HHHHHHHHhCCCcEEEeCCc-----chHhHHHhhhc-CcEEecCcccc
Q 046789 129 IIVAQEAARKNIPILIDTER-----QRERIDEFLKL-ASYAVCSAKFP 170 (336)
Q Consensus 129 ~~~~~~a~~~~~~v~~d~~~-----~~~~~~~~l~~-~dil~~n~~e~ 170 (336)
.++++.|+++++|+++|... .+..+..+++. +|+++.+.+-+
T Consensus 177 ~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la~GaDLV~~SgdKl 224 (395)
T COG1921 177 EELVEIAHEKGLPVIVDLASGALVDKEPDLREALALGADLVSFSGDKL 224 (395)
T ss_pred HHHHHHHHHcCCCEEEecCCccccccccchhHHHhcCCCEEEEecchh
Confidence 36899999999999999954 56788888865 99999887643
No 124
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=30.70 E-value=3.2e+02 Score=24.54 Aligned_cols=88 Identities=13% Similarity=0.107 Sum_probs=54.4
Q ss_pred HhhhccCCcEEEEcCCc-------------------HHHHHHHHHHHHhCCCcEEEeCC------cchHhHHHhhhcCcE
Q 046789 108 IFSALDGARILYLDGRL-------------------PDTAIIVAQEAARKNIPILIDTE------RQRERIDEFLKLASY 162 (336)
Q Consensus 108 ~~~~l~~~~~i~~~~~~-------------------~~~~~~~~~~a~~~~~~v~~d~~------~~~~~~~~~l~~~di 162 (336)
+.+.++++++++.||.. .+....+++.+.+++.+|++=-. .....+..-.+..++
T Consensus 58 ~~~~i~~A~li~pDG~gvV~~ar~~~g~~~~~rv~G~Dl~~~Ll~~a~~~~~~vfllGgkp~V~~~a~~~l~~~~p~l~i 137 (253)
T COG1922 58 FREILNQADLILPDGIGVVRAARRLLGQPLPERVAGTDLVEALLKRAAEEGKRVFLLGGKPGVAEQAAAKLRAKYPGLKI 137 (253)
T ss_pred HHHHHhhcCEEccCchhHHHHHHHHhCccCcccCChHHHHHHHHHHhCccCceEEEecCCHHHHHHHHHHHHHHCCCceE
Confidence 56789999999999873 14556788888888887766441 233344555555667
Q ss_pred EecCcccchhhcCCCChHHHHHHHHHcCCCCcEEEEeec
Q 046789 163 AVCSAKFPQVWTEAPSVPSALVSMLLRLPNLRFAIVTLG 201 (336)
Q Consensus 163 l~~n~~e~~~l~~~~~~~~~~~~~l~~~~~~~~vvvt~G 201 (336)
+......... . .++.+.+.+... +++.++|-+|
T Consensus 138 vg~h~GYf~~----~-e~~~i~~~I~~s-~pdil~VgmG 170 (253)
T COG1922 138 VGSHDGYFDP----E-EEEAIVERIAAS-GPDILLVGMG 170 (253)
T ss_pred EEecCCCCCh----h-hHHHHHHHHHhc-CCCEEEEeCC
Confidence 6665443321 1 123455555553 7777777665
No 125
>PRK07582 cystathionine gamma-lyase; Validated
Probab=30.23 E-value=2.6e+02 Score=26.35 Aligned_cols=18 Identities=17% Similarity=0.246 Sum_probs=11.8
Q ss_pred HHHHHHHHhCCCcEEEeC
Q 046789 129 IIVAQEAARKNIPILIDT 146 (336)
Q Consensus 129 ~~~~~~a~~~~~~v~~d~ 146 (336)
.++.+.++++++.+++|-
T Consensus 152 ~~I~~~a~~~g~~lvVD~ 169 (366)
T PRK07582 152 AALAAAAHAAGALLVVDN 169 (366)
T ss_pred HHHHHHHHHcCCEEEEEC
Confidence 346666666677777776
No 126
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=30.21 E-value=50 Score=31.65 Aligned_cols=36 Identities=19% Similarity=0.138 Sum_probs=19.6
Q ss_pred HHHHHHHHhCC-CcEEEeCCcchHhHHHhhh-cCcEEe
Q 046789 129 IIVAQEAARKN-IPILIDTERQRERIDEFLK-LASYAV 164 (336)
Q Consensus 129 ~~~~~~a~~~~-~~v~~d~~~~~~~~~~~l~-~~dil~ 164 (336)
..+.+.|+++| +++++|---..+...+-|+ .+|++.
T Consensus 160 ~~i~~~a~~~g~~~~vVDnT~atp~~~~pL~~GaDivv 197 (386)
T PF01053_consen 160 EAIAKLAKEHGDILVVVDNTFATPYNQNPLELGADIVV 197 (386)
T ss_dssp HHHHHHHHHTTT-EEEEECTTTHTTTC-GGGGT-SEEE
T ss_pred HHHHHHHHHhCCceEEeeccccceeeeccCcCCceEEE
Confidence 45788888888 9999997322222222233 366655
No 127
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=29.78 E-value=4.6e+02 Score=25.11 Aligned_cols=102 Identities=14% Similarity=0.180 Sum_probs=59.8
Q ss_pred EecCCchHHHHHHHHHcC-CCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCeeEEEecCC
Q 046789 16 VQGGGNAGNALTCAARLG-LNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHTPG 94 (336)
Q Consensus 16 ~~~GG~a~n~a~~l~~LG-~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~~~~~~~ 94 (336)
....|.+.--|...+.+. .+-.++..-| .||+.+.+.++.+|.++..+.....
T Consensus 61 l~gsGt~amEAav~sl~~pgdkVLv~~nG--~FG~R~~~ia~~~g~~v~~~~~~wg------------------------ 114 (383)
T COG0075 61 LSGSGTLAMEAAVASLVEPGDKVLVVVNG--KFGERFAEIAERYGAEVVVLEVEWG------------------------ 114 (383)
T ss_pred EcCCcHHHHHHHHHhccCCCCeEEEEeCC--hHHHHHHHHHHHhCCceEEEeCCCC------------------------
Confidence 444555554554444443 2334444444 6999999999999998776532111
Q ss_pred CCCCCCcccchhhHhhhccCCcEEEE---cCCc--HHHHHHHHHHHHhCCCcEEEeC
Q 046789 95 DPPMIPDDLSESTIFSALDGARILYL---DGRL--PDTAIIVAQEAARKNIPILIDT 146 (336)
Q Consensus 95 ~~~~~~e~~~~~~~~~~l~~~~~i~~---~~~~--~~~~~~~~~~a~~~~~~v~~d~ 146 (336)
..++++++.. ..+.-.+.+++.+ +... ...+.++.+.+++++..+++|.
T Consensus 115 -~~v~p~~v~~--~L~~~~~~~~V~~vH~ETSTGvlnpl~~I~~~~k~~g~l~iVDa 168 (383)
T COG0075 115 -EAVDPEEVEE--ALDKDPDIKAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDA 168 (383)
T ss_pred -CCCCHHHHHH--HHhcCCCccEEEEEeccCcccccCcHHHHHHHHHHcCCEEEEEe
Confidence 2455565554 1111223444433 2221 2455678888999999999998
No 128
>PRK09330 cell division protein FtsZ; Validated
Probab=29.69 E-value=4.8e+02 Score=25.00 Aligned_cols=127 Identities=20% Similarity=0.282 Sum_probs=68.3
Q ss_pred EecCCchHHHHHHHHHcCCC-ceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCeeEEEecCC
Q 046789 16 VQGGGNAGNALTCAARLGLN-PRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHTPG 94 (336)
Q Consensus 16 ~~~GG~a~n~a~~l~~LG~~-v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~~~~~~~ 94 (336)
.-.||+|.|+.-.+.+.|.+ |.++. +-.|. +.|.....+... ++ ....| ...| ..+
T Consensus 19 iGvGG~G~Nav~~m~~~~~~~v~fia-~NTD~------q~L~~~~a~~ki-~l-G~~~t-------~GlG-------aG~ 75 (384)
T PRK09330 19 IGVGGGGGNAVNRMIEEGIQGVEFIA-ANTDA------QALLKSKAPVKI-QL-GEKLT-------RGLG-------AGA 75 (384)
T ss_pred EEECCcHHHHHHHHHHcCCCCceEEE-EeCcH------HHHhcCCCCeEE-Ec-CCccc-------ccCC-------CCC
Confidence 77899999999999999854 55444 55554 356655555332 22 11111 0001 001
Q ss_pred CCCCCCcccch--hhHhhhccCCcEEEEcCCc-----HHHHHHHHHHHHhCCCcEE---EeC---------CcchHhHHH
Q 046789 95 DPPMIPDDLSE--STIFSALDGARILYLDGRL-----PDTAIIVAQEAARKNIPIL---IDT---------ERQRERIDE 155 (336)
Q Consensus 95 ~~~~~~e~~~~--~~~~~~l~~~~~i~~~~~~-----~~~~~~~~~~a~~~~~~v~---~d~---------~~~~~~~~~ 155 (336)
.+.+-.+-..+ +.+.+.++++|.+.+...+ ....--+.+.+++.+++++ .-| ......+.+
T Consensus 76 ~pe~G~~aaee~~e~I~~~l~~~D~vfI~AGmGGGTGTGaapvIA~iake~g~ltvaVvt~PF~fEG~~r~~nA~~gL~~ 155 (384)
T PRK09330 76 NPEVGRKAAEESREEIREALEGADMVFITAGMGGGTGTGAAPVVAEIAKELGILTVAVVTKPFSFEGKKRMKQAEEGIEE 155 (384)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCEEEEEecCCCcccHHHHHHHHHHHHHcCCcEEEEEecCccccchhHHHHHHHHHHH
Confidence 11221111111 4467889999998774332 2233235566777776532 112 123346777
Q ss_pred hhhcCcEEec
Q 046789 156 FLKLASYAVC 165 (336)
Q Consensus 156 ~l~~~dil~~ 165 (336)
+.+++|.+++
T Consensus 156 L~~~~D~vIv 165 (384)
T PRK09330 156 LRKHVDTLIV 165 (384)
T ss_pred HHHHCCEEEE
Confidence 8889997663
No 129
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=28.77 E-value=1.1e+02 Score=23.90 Aligned_cols=55 Identities=22% Similarity=0.321 Sum_probs=33.0
Q ss_pred HhhhccCCcEEEEcCCcHHHHHHHHHHHHhCCCcEEEeCC----cchHhHHHhhhcCcEE
Q 046789 108 IFSALDGARILYLDGRLPDTAIIVAQEAARKNIPILIDTE----RQRERIDEFLKLASYA 163 (336)
Q Consensus 108 ~~~~l~~~~~i~~~~~~~~~~~~~~~~a~~~~~~v~~d~~----~~~~~~~~~l~~~dil 163 (336)
+.+.+..+|++ ++-..|+.....++.+.++++++++-.- ...+.+.++.+.+-++
T Consensus 61 l~~~~~~~DVv-IDfT~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~~~vl 119 (124)
T PF01113_consen 61 LEELLEEADVV-IDFTNPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEELAKKIPVL 119 (124)
T ss_dssp HHHHTTH-SEE-EEES-HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHHTTTSEEE
T ss_pred HHHhcccCCEE-EEcCChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHHhccCCEE
Confidence 34556668855 4444899999999999999999988772 2224444444444444
No 130
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=28.43 E-value=4.3e+02 Score=23.64 Aligned_cols=65 Identities=18% Similarity=0.228 Sum_probs=46.5
Q ss_pred CCcEEEEcCCcH----HHHHHHHHHHHhCCCcEEEeCC--cchHhHHHhhhcCcEEecCc----cc-chhhcCCCC
Q 046789 114 GARILYLDGRLP----DTAIIVAQEAARKNIPILIDTE--RQRERIDEFLKLASYAVCSA----KF-PQVWTEAPS 178 (336)
Q Consensus 114 ~~~~i~~~~~~~----~~~~~~~~~a~~~~~~v~~d~~--~~~~~~~~~l~~~dil~~n~----~e-~~~l~~~~~ 178 (336)
..+.+.++|.-| +.+.++++.+++.|.++.+|.+ -.+.....+++..|.+.++- ++ ...+++...
T Consensus 83 ~~~gvt~SGGEP~~q~e~~~~~~~~ake~Gl~~~l~TnG~~~~~~~~~l~~~~D~v~~DlK~~~~~~y~~~tg~~~ 158 (260)
T COG1180 83 SGGGVTFSGGEPTLQAEFALDLLRAAKERGLHVALDTNGFLPPEALEELLPLLDAVLLDLKAFDDELYRKLTGADN 158 (260)
T ss_pred CCCEEEEECCcchhhHHHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHhhcCeEEEeeccCChHHHHHHhCCCc
Confidence 668888887754 7888999999999999999995 23344466777788766542 23 456666554
No 131
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=28.31 E-value=3.7e+02 Score=22.86 Aligned_cols=35 Identities=6% Similarity=0.055 Sum_probs=23.4
Q ss_pred hhhccCCcEEEEcCCcHHHHHHHHHHHHhCCCcEE
Q 046789 109 FSALDGARILYLDGRLPDTAIIVAQEAARKNIPIL 143 (336)
Q Consensus 109 ~~~l~~~~~i~~~~~~~~~~~~~~~~a~~~~~~v~ 143 (336)
.+.++++|+++.+...++....+-+.++++++|++
T Consensus 106 ~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i 140 (202)
T TIGR02356 106 ELLINNVDLVLDCTDNFATRYLINDACVALGTPLI 140 (202)
T ss_pred HHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 34577888887766555555556666777777754
No 132
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=26.36 E-value=1.7e+02 Score=25.73 Aligned_cols=52 Identities=10% Similarity=0.093 Sum_probs=38.0
Q ss_pred cCCcEEEEcCCcHHHHHHHHHHHHhCCCc--EEEeCCcchHhHHHhhhcCcEEe
Q 046789 113 DGARILYLDGRLPDTAIIVAQEAARKNIP--ILIDTERQRERIDEFLKLASYAV 164 (336)
Q Consensus 113 ~~~~~i~~~~~~~~~~~~~~~~a~~~~~~--v~~d~~~~~~~~~~~l~~~dil~ 164 (336)
.++|++.+.........++++..++.|++ +.++|....+.+..+++.+|.+.
T Consensus 84 ~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~Vl 137 (223)
T PRK08745 84 AGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVL 137 (223)
T ss_pred hCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEE
Confidence 47898888766544556788888888876 56777766777888888888543
No 133
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=26.08 E-value=3.7e+02 Score=23.83 Aligned_cols=99 Identities=14% Similarity=0.186 Sum_probs=54.6
Q ss_pred HHHHHHHcCCC-ceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCeeEEEecCCCCCCCCccc
Q 046789 25 ALTCAARLGLN-PRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHTPGDPPMIPDDL 103 (336)
Q Consensus 25 ~a~~l~~LG~~-v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~e~~ 103 (336)
+..+|+.||.+ +.+++.. .+...+.+.++|++.|+++....-. +... ...+ ..++++.+
T Consensus 111 ~~~AL~alg~~RIalvTPY-~~~v~~~~~~~l~~~G~eV~~~~~~-~~~~-----------~~~i-------a~i~p~~i 170 (239)
T TIGR02990 111 AVDGLAALGVRRISLLTPY-TPETSRPMAQYFAVRGFEIVNFTCL-GLTD-----------DREM-------ARISPDCI 170 (239)
T ss_pred HHHHHHHcCCCEEEEECCC-cHHHHHHHHHHHHhCCcEEeeeecc-CCCC-----------Ccee-------eecCHHHH
Confidence 44567788864 6777776 4467789999999999987655211 1101 1111 13444444
Q ss_pred chhhHhhhccCCcEEEEcCCcHHHHHHHHHHHHhCCCcEE
Q 046789 104 SESTIFSALDGARILYLDGRLPDTAIIVAQEAARKNIPIL 143 (336)
Q Consensus 104 ~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~a~~~~~~v~ 143 (336)
......-.-.++|.+++++.......-+-+.-++-|+||+
T Consensus 171 ~~~~~~~~~~~aDAifisCTnLrt~~vi~~lE~~lGkPVl 210 (239)
T TIGR02990 171 VEAALAAFDPDADALFLSCTALRAATCAQRIEQAIGKPVV 210 (239)
T ss_pred HHHHHHhcCCCCCEEEEeCCCchhHHHHHHHHHHHCCCEE
Confidence 4311111235788888876644332222222235677763
No 134
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=26.05 E-value=45 Score=28.47 Aligned_cols=68 Identities=19% Similarity=0.211 Sum_probs=47.0
Q ss_pred Ccc-cccceeeecccccCCCCCccccCCchhhhHHHHHHHH-HhCCChhhHHHHHHHHHHhhccccCCcc
Q 046789 255 GIG-TVSGRLYIGTAEKIPPSELVDTTGAGDAFIGAVLYAL-CANMSPEKMLPFAAQVAAAGCRALGART 322 (336)
Q Consensus 255 g~~-~~~~~~~~~~~~~~~~~~vvd~tGAGDaF~ag~i~~l-~~g~~l~~al~~a~~~Aa~~~~~~g~~~ 322 (336)
||. ...|.+|..|.--....+.----|.|-+|.=||+-.- -.++++|||+++---+-++.+.+.|..-
T Consensus 121 GwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~r~nMt~EE~~~fvk~Av~lAi~rDGsSG 190 (224)
T KOG0174|consen 121 GWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANWRPNMTLEECVRFVKNAVSLAIERDGSSG 190 (224)
T ss_pred ecccccCceEEEeecCceEeecceeeccCCceeeeeeehhhcCCCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence 554 3457788655321122233334588999888777554 5689999999999888888888888653
No 135
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=25.62 E-value=5.5e+02 Score=26.09 Aligned_cols=106 Identities=18% Similarity=0.254 Sum_probs=60.7
Q ss_pred cCCCceEEEeecCChhhH-HHHHHHHHcCCcccce-EEeCCCCccEEEEEEcCCCCeeEEEecCCCCCCCCcccchhhHh
Q 046789 32 LGLNPRIISKIADDPQGK-GIREEFEADGVDTSFL-VVSKEGNSPFTYVIVDNQMKTRTCIHTPGDPPMIPDDLSESTIF 109 (336)
Q Consensus 32 LG~~v~~i~~vG~D~~g~-~i~~~l~~~gv~~~~i-~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~e~~~~~~~~ 109 (336)
|--++=.++.+|.=+.|+ .++++|++.-|-..-- -+. +..+-..+... +|...+++-+||-. .|. .+..
T Consensus 149 l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGIT--QhIGAF~V~~p-~G~~iTFLDTPGHa-----AF~-aMRa 219 (683)
T KOG1145|consen 149 LEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGIT--QHIGAFTVTLP-SGKSITFLDTPGHA-----AFS-AMRA 219 (683)
T ss_pred cCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCcc--ceeceEEEecC-CCCEEEEecCCcHH-----HHH-HHHh
Confidence 333444444444434555 4999998876644321 121 22444444444 66666676667621 121 2233
Q ss_pred hhccCCcEEEE----cCCcHHHHHHHHHHHHhCCCcEEEeC
Q 046789 110 SALDGARILYL----DGRLPDTAIIVAQEAARKNIPILIDT 146 (336)
Q Consensus 110 ~~l~~~~~i~~----~~~~~~~~~~~~~~a~~~~~~v~~d~ 146 (336)
.-.+-+|++++ +-.....+++.++.|+..++|+++-+
T Consensus 220 RGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAi 260 (683)
T KOG1145|consen 220 RGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAI 260 (683)
T ss_pred ccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEE
Confidence 44566677765 22234556789999999999999877
No 136
>PRK08005 epimerase; Validated
Probab=25.55 E-value=1.8e+02 Score=25.30 Aligned_cols=51 Identities=0% Similarity=-0.082 Sum_probs=36.8
Q ss_pred cCCcEEEEcCCcHHHHHHHHHHHHhCCCc--EEEeCCcchHhHHHhhhcCcEE
Q 046789 113 DGARILYLDGRLPDTAIIVAQEAARKNIP--ILIDTERQRERIDEFLKLASYA 163 (336)
Q Consensus 113 ~~~~~i~~~~~~~~~~~~~~~~a~~~~~~--v~~d~~~~~~~~~~~l~~~dil 163 (336)
.++|++.+.-.......++++..++.|.+ +.++|....+.+..+++.+|.+
T Consensus 80 ~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~V 132 (210)
T PRK08005 80 IRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDAL 132 (210)
T ss_pred hCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEE
Confidence 46788887666544456788888888876 4677776667778888888854
No 137
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=25.37 E-value=1.9e+02 Score=25.30 Aligned_cols=52 Identities=6% Similarity=0.127 Sum_probs=38.8
Q ss_pred cCCcEEEEcCCcHHHHHHHHHHHHhCCCc--EEEeCCcchHhHHHhhhcCcEEe
Q 046789 113 DGARILYLDGRLPDTAIIVAQEAARKNIP--ILIDTERQRERIDEFLKLASYAV 164 (336)
Q Consensus 113 ~~~~~i~~~~~~~~~~~~~~~~a~~~~~~--v~~d~~~~~~~~~~~l~~~dil~ 164 (336)
.++|++.+.........++++..++.|.. +.++|....+.+..+++.+|.+.
T Consensus 80 ~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vl 133 (220)
T PRK08883 80 AGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLIL 133 (220)
T ss_pred hCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEE
Confidence 46788888766555566788888888876 46777767778888888888544
No 138
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=25.21 E-value=4.2e+02 Score=22.33 Aligned_cols=123 Identities=16% Similarity=0.229 Sum_probs=69.4
Q ss_pred ecCChhhHHHHHHHHHcCCcccceEEeCC--CCccEEEEEEcCCCCeeEEE-ecCCC-CC-----CCCcccch---hhHh
Q 046789 42 IADDPQGKGIREEFEADGVDTSFLVVSKE--GNSPFTYVIVDNQMKTRTCI-HTPGD-PP-----MIPDDLSE---STIF 109 (336)
Q Consensus 42 vG~D~~g~~i~~~l~~~gv~~~~i~~~~~--~~t~~~~~~~~~~g~~~~~~-~~~~~-~~-----~~~e~~~~---~~~~ 109 (336)
+|+-..-..+.+.|++.|.++-++....- ....+-|.++|-..+.+..+ +.... +. ...+.++. ..+.
T Consensus 16 vGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~~le~i~~~al~ 95 (179)
T COG1618 16 VGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVEGLEEIAIPALR 95 (179)
T ss_pred ccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHHHHHHHhHHHHH
Confidence 44556677888999999888877633211 11233344555443333333 22211 11 11222222 3355
Q ss_pred hhccCCcEEEEcCCcH-----HHHHHHHHHHHhCCCcEEEeCC--cchHhHHHhhhcCcEEe
Q 046789 110 SALDGARILYLDGRLP-----DTAIIVAQEAARKNIPILIDTE--RQRERIDEFLKLASYAV 164 (336)
Q Consensus 110 ~~l~~~~~i~~~~~~~-----~~~~~~~~~a~~~~~~v~~d~~--~~~~~~~~~l~~~dil~ 164 (336)
.+++.+|++++|-.-| ....+.++...+.+.|+++-+. ...+.++.+-+...+..
T Consensus 96 rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~P~v~~ik~~~~v~v 157 (179)
T COG1618 96 RALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRHPLVQRIKKLGGVYV 157 (179)
T ss_pred HHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccCChHHHHhhhcCCEEE
Confidence 6677889999987754 4556777777778888777662 22345566655555544
No 139
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=24.59 E-value=1.6e+02 Score=20.07 Aligned_cols=13 Identities=38% Similarity=0.567 Sum_probs=11.9
Q ss_pred hhhHHHHHHHHHh
Q 046789 284 DAFIGAVLYALCA 296 (336)
Q Consensus 284 DaF~ag~i~~l~~ 296 (336)
|+|.+|+.+++.+
T Consensus 4 Daf~vg~~~g~~~ 16 (67)
T PF02659_consen 4 DAFAVGISYGLRG 16 (67)
T ss_pred HHHHHHHHHHHHc
Confidence 9999999999984
No 140
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=24.52 E-value=3.2e+02 Score=25.74 Aligned_cols=133 Identities=14% Similarity=0.216 Sum_probs=67.6
Q ss_pred EecCCchHHHHHHHHHcCCCceEEEeecCChhhHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCeeEEEecCCC
Q 046789 16 VQGGGNAGNALTCAARLGLNPRIISKIADDPQGKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHTPGD 95 (336)
Q Consensus 16 ~~~GG~a~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~ 95 (336)
.-.||+|.|+.-.+.+.+..-.-+-.+-.|. +.|.....+.... + ....|. -.. .|.+.. .+
T Consensus 23 iGvGg~G~n~v~~l~~~~~~~~~~iainTD~------~~L~~~~a~~ki~-i-G~~~t~----G~G-aG~~~~----~G- 84 (349)
T TIGR00065 23 IGVGGGGNNTVNRMLEEGVEGVEFIAINTDA------QHLKTTKADKKIL-I-GKKLTR----GLG-AGGNPE----IG- 84 (349)
T ss_pred EEeCCcHHHHHHHHHHcCCCceEEEEEECCH------HHHhcCCCCeEEE-c-CCCCCC----CCC-CCCCHH----HH-
Confidence 6789999999999999986543333455554 3566555443322 2 111111 000 010000 01
Q ss_pred CCCCCcccchhhHhhhccCCcEEEEcCCc-----HHHHHHHHHHHHhCCCcEE-E--eC---------CcchHhHHHhhh
Q 046789 96 PPMIPDDLSESTIFSALDGARILYLDGRL-----PDTAIIVAQEAARKNIPIL-I--DT---------ERQRERIDEFLK 158 (336)
Q Consensus 96 ~~~~~e~~~~~~~~~~l~~~~~i~~~~~~-----~~~~~~~~~~a~~~~~~v~-~--d~---------~~~~~~~~~~l~ 158 (336)
.....+.. +.+.+.++++|.+.+...+ .....-+.+.+++.+++++ + -| ......+..+.+
T Consensus 85 ~~~aee~~--d~Ir~~le~~D~vfI~aglGGGTGSG~apvia~~ake~~~l~vaivt~Pf~~Eg~~r~~nA~~~l~~L~~ 162 (349)
T TIGR00065 85 RKAAEESR--DEIRKLLEGADMVFITAGMGGGTGTGAAPVVAKIAKELGALTVAVVTKPFKFEGLKRRKKAEEGLERLKQ 162 (349)
T ss_pred HHHHHHHH--HHHHHHHhCCCEEEEEEeccCccchhHHHHHHHHHHHcCCCEEEEEeCCccccchhhHHHHHHHHHHHHH
Confidence 11111211 3467788999988774222 2333344555666665432 2 12 113346677778
Q ss_pred cCcEEecCcc
Q 046789 159 LASYAVCSAK 168 (336)
Q Consensus 159 ~~dil~~n~~ 168 (336)
.+|.+++-.+
T Consensus 163 ~~D~vividN 172 (349)
T TIGR00065 163 AVDTLIVIPN 172 (349)
T ss_pred hCCEEEEEeC
Confidence 8887664433
No 141
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=24.43 E-value=5.3e+02 Score=23.30 Aligned_cols=109 Identities=14% Similarity=0.061 Sum_probs=58.7
Q ss_pred HHHHHHHcC-----CCceEEEeecCChh--hHHHHHHHHHcCCcccceEEeCCCCccEEEEEEcCCCCeeEEEecCCCCC
Q 046789 25 ALTCAARLG-----LNPRIISKIADDPQ--GKGIREEFEADGVDTSFLVVSKEGNSPFTYVIVDNQMKTRTCIHTPGDPP 97 (336)
Q Consensus 25 ~a~~l~~LG-----~~v~~i~~vG~D~~--g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~ 97 (336)
.|.+.+..+ .+...+...|+-.+ -..+.+.|.-..+ +..+|+-.+.++.+ +++.+..+....
T Consensus 125 ~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~~~EalNlA~l--------~~lp~gg~ifvveN---Nq~g~sT~~~~~ 193 (265)
T cd02016 125 KTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSNL--------PGYTTGGTIHIVVN---NQIGFTTDPRDS 193 (265)
T ss_pred HHHHHHHhcCCccCCCeEEEEEecCccccCCChHHHHHHHHHh--------cCCCCCCEEEEEEe---CCEEEEecHHHh
Confidence 445555555 36777888887652 2345555553322 34444323333332 334444432122
Q ss_pred CCCcccchhhHhhhccCCcEEEEcCCcHHHHHH----HHHHHHhCCCcEEEeCC
Q 046789 98 MIPDDLSESTIFSALDGARILYLDGRLPDTAII----VAQEAARKNIPILIDTE 147 (336)
Q Consensus 98 ~~~e~~~~~~~~~~l~~~~~i~~~~~~~~~~~~----~~~~a~~~~~~v~~d~~ 147 (336)
....++.. ..+ .-+...++++|..++.+.+ +++.+++.+.|+++|+.
T Consensus 194 ~~~~~~~~--~a~-~~gip~~~VdG~D~~aV~~a~~~A~~~~r~g~gp~lIe~~ 244 (265)
T cd02016 194 RSSPYCTD--VAK-MIGAPIFHVNGDDPEAVVRATRLALEYRQKFKKDVVIDLV 244 (265)
T ss_pred cccccHHH--HHe-ecCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEE
Confidence 22222332 111 2367899999998866554 55566777889999983
No 142
>PRK09028 cystathionine beta-lyase; Provisional
Probab=23.72 E-value=2.4e+02 Score=27.07 Aligned_cols=34 Identities=15% Similarity=0.350 Sum_probs=23.6
Q ss_pred cCCcEEEEcCCc-----HHHHHHHHHHHHhCCCcEEEeC
Q 046789 113 DGARILYLDGRL-----PDTAIIVAQEAARKNIPILIDT 146 (336)
Q Consensus 113 ~~~~~i~~~~~~-----~~~~~~~~~~a~~~~~~v~~d~ 146 (336)
.+.++++++.-. ...+.++++.|+++++.+++|-
T Consensus 145 ~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~ 183 (394)
T PRK09028 145 PNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDN 183 (394)
T ss_pred cCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEEC
Confidence 346777765321 2445678888899999999997
No 143
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=22.14 E-value=4.4e+02 Score=22.37 Aligned_cols=33 Identities=9% Similarity=0.067 Sum_probs=26.7
Q ss_pred CCcEEEEcCCc-HHHHHHHHHHHHhCCCcEEEeC
Q 046789 114 GARILYLDGRL-PDTAIIVAQEAARKNIPILIDT 146 (336)
Q Consensus 114 ~~~~i~~~~~~-~~~~~~~~~~a~~~~~~v~~d~ 146 (336)
..|++++-+.. +.....+.+..+..|.++++++
T Consensus 92 ~~~ii~ilg~~~g~~~~~~~r~~~~~g~~v~vN~ 125 (185)
T PF09314_consen 92 KYDIILILGYGIGPFFLPFLRKLRKKGGKVVVNM 125 (185)
T ss_pred cCCEEEEEcCCccHHHHHHHHhhhhcCCcEEECC
Confidence 35688887776 5677788888888999999999
No 144
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=21.48 E-value=2.2e+02 Score=24.19 Aligned_cols=51 Identities=14% Similarity=0.112 Sum_probs=39.5
Q ss_pred HHHHHHHHHcCCCceEEEe---ecCChh--------hHHHHHHHHHcCCcccceEEeCCCCc
Q 046789 23 GNALTCAARLGLNPRIISK---IADDPQ--------GKGIREEFEADGVDTSFLVVSKEGNS 73 (336)
Q Consensus 23 ~n~a~~l~~LG~~v~~i~~---vG~D~~--------g~~i~~~l~~~gv~~~~i~~~~~~~t 73 (336)
.=+...+.+.|..+.++|. +|...+ -..+.+.|++.|+..+.+..+++.+.
T Consensus 37 i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~gv~id~i~~Cph~p~ 98 (181)
T COG0241 37 IPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQGVKIDGILYCPHHPE 98 (181)
T ss_pred HHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcCCccceEEECCCCCC
Confidence 3455667788999999998 666443 44588889999999999988888665
No 145
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=21.27 E-value=3.1e+02 Score=25.06 Aligned_cols=45 Identities=16% Similarity=0.332 Sum_probs=33.6
Q ss_pred eEEecCCchHHHHHHHHHcCCC-ceEEEeecCChhhHHHHHHHHHcCC
Q 046789 14 IVVQGGGNAGNALTCAARLGLN-PRIISKIADDPQGKGIREEFEADGV 60 (336)
Q Consensus 14 ~~~~~GG~a~n~a~~l~~LG~~-v~~i~~vG~D~~g~~i~~~l~~~gv 60 (336)
+-.-+||.+.-++.+|+++|.. ++++-. +.+.++.+.+.+.+.+.
T Consensus 130 lilGAGGAarAv~~aL~~~g~~~i~V~NR--t~~ra~~La~~~~~~~~ 175 (283)
T COG0169 130 LILGAGGAARAVAFALAEAGAKRITVVNR--TRERAEELADLFGELGA 175 (283)
T ss_pred EEECCcHHHHHHHHHHHHcCCCEEEEEeC--CHHHHHHHHHHhhhccc
Confidence 3478999999999999999964 444443 23557788888887765
No 146
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=21.16 E-value=2.1e+02 Score=24.08 Aligned_cols=58 Identities=17% Similarity=0.334 Sum_probs=40.1
Q ss_pred CCcEEEEcCCc-HHHHHHHHHHH-HhCCCcEEEeCC----cchHhHHHhhhcCcEEecCcccch
Q 046789 114 GARILYLDGRL-PDTAIIVAQEA-ARKNIPILIDTE----RQRERIDEFLKLASYAVCSAKFPQ 171 (336)
Q Consensus 114 ~~~~i~~~~~~-~~~~~~~~~~a-~~~~~~v~~d~~----~~~~~~~~~l~~~dil~~n~~e~~ 171 (336)
+++.+...|.. ++..++.++.+ ..+++.|+.||. ..+..+...++.+--.++...++.
T Consensus 22 d~~~I~T~Gs~i~~~~i~~i~~~~~~rgVIIfTDpD~~GekIRk~i~~~vp~~khafi~~~~a~ 85 (174)
T TIGR00334 22 DVDVIETNGSALKDETINLIKKAQKKQGVIILTDPDFPGEKIRKKIEQHLPGYENCFIPKHLAK 85 (174)
T ss_pred CceEEEECCCccCHHHHHHHHHHhhcCCEEEEeCCCCchHHHHHHHHHHCCCCeEEeeeHHhcC
Confidence 57888888874 66666666554 558899999994 344556666666666777766654
No 147
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=21.13 E-value=3e+02 Score=25.69 Aligned_cols=80 Identities=9% Similarity=0.018 Sum_probs=48.4
Q ss_pred hhhHHHHHHHHHcCCcccceEEeCCC--CccEEEEEEcCCCCeeEEEecCCCCCCCCcccchhhHhhhccCCcEEEEcCC
Q 046789 46 PQGKGIREEFEADGVDTSFLVVSKEG--NSPFTYVIVDNQMKTRTCIHTPGDPPMIPDDLSESTIFSALDGARILYLDGR 123 (336)
Q Consensus 46 ~~g~~i~~~l~~~gv~~~~i~~~~~~--~t~~~~~~~~~~g~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~i~~~~~ 123 (336)
..|+.+++.|++.+.....+...... ..+..+.+ . | .++..+++.. ..+++.|+..| .
T Consensus 13 ~VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i~f-~--g-----------~~~~V~~l~~----~~f~~vDia~f--a 72 (322)
T PRK06901 13 ELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGIRF-N--N-----------KAVEQIAPEE----VEWADFNYVFF--A 72 (322)
T ss_pred HHHHHHHHHHHhcCCchhheeecccccccCCCEEEE-C--C-----------EEEEEEECCc----cCcccCCEEEE--c
Confidence 58999999999999887754332221 11211111 1 1 2333334443 34568899888 4
Q ss_pred cHHHHHHHHHHHHhCCCcEEEeC
Q 046789 124 LPDTAIIVAQEAARKNIPILIDT 146 (336)
Q Consensus 124 ~~~~~~~~~~~a~~~~~~v~~d~ 146 (336)
..+...++...+.+.|+. ++|-
T Consensus 73 g~~~s~~~ap~a~~aG~~-VIDn 94 (322)
T PRK06901 73 GKMAQAEHLAQAAEAGCI-VIDL 94 (322)
T ss_pred CHHHHHHHHHHHHHCCCE-EEEC
Confidence 445777888888888875 4566
No 148
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=20.69 E-value=1.8e+02 Score=22.72 Aligned_cols=36 Identities=14% Similarity=0.103 Sum_probs=26.1
Q ss_pred HhhhccCCcEEEEcCCcHHHHHHHHHHHHhCCCcEE
Q 046789 108 IFSALDGARILYLDGRLPDTAIIVAQEAARKNIPIL 143 (336)
Q Consensus 108 ~~~~l~~~~~i~~~~~~~~~~~~~~~~a~~~~~~v~ 143 (336)
..+.++++|+++.+....+....+.+.++++++|++
T Consensus 86 ~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i 121 (135)
T PF00899_consen 86 IEELLKDYDIVIDCVDSLAARLLLNEICREYGIPFI 121 (135)
T ss_dssp HHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEE
T ss_pred ccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEE
Confidence 345568889888776666766677788888888765
Done!